diff options
1599 files changed, 62335 insertions, 22682 deletions
diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md index 5f21df834d56c..4fb4c0f68f9b4 100644 --- a/.github/PULL_REQUEST_TEMPLATE.md +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -22,7 +22,7 @@ For new packages please briefly describe the package or provide a link to its ho - made sure NixOS tests are [linked](https://nixos.org/manual/nixpkgs/unstable/#ssec-nixos-tests-linking) to the relevant packages - [ ] Tested compilation of all packages that depend on this change using `nix-shell -p nixpkgs-review --run "nixpkgs-review rev HEAD"`. Note: all changes have to be committed, also see [nixpkgs-review usage](https://github.com/Mic92/nixpkgs-review#usage) - [ ] Tested basic functionality of all binary files (usually in `./result/bin/`) -- [23.05 Release Notes (or backporting 22.11 Release notes)](https://github.com/NixOS/nixpkgs/blob/master/CONTRIBUTING.md#generating-2305-release-notes) +- [23.11 Release Notes (or backporting 23.05 Release notes)](https://github.com/NixOS/nixpkgs/blob/master/CONTRIBUTING.md#generating-2305-release-notes) - [ ] (Package updates) Added a release notes entry if the change is major or breaking - [ ] (Module updates) Added a release notes entry if the change is significant - [ ] (Module addition) Added a release notes entry if adding a new NixOS module diff --git a/.github/workflows/basic-eval.yml b/.github/workflows/basic-eval.yml index 605d6a30a383f..3af716e889766 100644 --- a/.github/workflows/basic-eval.yml +++ b/.github/workflows/basic-eval.yml @@ -19,7 +19,7 @@ jobs: # we don't limit this action to only NixOS repo since the checks are cheap and useful developer feedback steps: - uses: actions/checkout@v3 - - uses: cachix/install-nix-action@v20 + - uses: cachix/install-nix-action@v21 - uses: cachix/cachix-action@v12 with: # This cache is for the nixpkgs repo checks and should not be trusted or used elsewhere. diff --git a/.github/workflows/check-maintainers-sorted.yaml b/.github/workflows/check-maintainers-sorted.yaml index fc03988b068d3..c72679af4a9ed 100644 --- a/.github/workflows/check-maintainers-sorted.yaml +++ b/.github/workflows/check-maintainers-sorted.yaml @@ -16,7 +16,7 @@ jobs: with: # pull_request_target checks out the base branch by default ref: refs/pull/${{ github.event.pull_request.number }}/merge - - uses: cachix/install-nix-action@v20 + - uses: cachix/install-nix-action@v21 with: # explicitly enable sandbox extra_nix_config: sandbox = true diff --git a/.github/workflows/editorconfig.yml b/.github/workflows/editorconfig.yml index 5dd85ca26f9d0..f62ab05da4526 100644 --- a/.github/workflows/editorconfig.yml +++ b/.github/workflows/editorconfig.yml @@ -28,7 +28,7 @@ jobs: with: # pull_request_target checks out the base branch by default ref: refs/pull/${{ github.event.pull_request.number }}/merge - - uses: cachix/install-nix-action@v20 + - uses: cachix/install-nix-action@v21 with: # nixpkgs commit is pinned so that it doesn't break # editorconfig-checker 2.4.0 diff --git a/.github/workflows/manual-nixos.yml b/.github/workflows/manual-nixos.yml index 85c7ac2d69290..30cecf607d17d 100644 --- a/.github/workflows/manual-nixos.yml +++ b/.github/workflows/manual-nixos.yml @@ -18,7 +18,7 @@ jobs: with: # pull_request_target checks out the base branch by default ref: refs/pull/${{ github.event.pull_request.number }}/merge - - uses: cachix/install-nix-action@v20 + - uses: cachix/install-nix-action@v21 with: # explicitly enable sandbox extra_nix_config: sandbox = true diff --git a/.github/workflows/manual-nixpkgs.yml b/.github/workflows/manual-nixpkgs.yml index 4f76a0d732c8e..43ee63af127dd 100644 --- a/.github/workflows/manual-nixpkgs.yml +++ b/.github/workflows/manual-nixpkgs.yml @@ -19,7 +19,7 @@ jobs: with: # pull_request_target checks out the base branch by default ref: refs/pull/${{ github.event.pull_request.number }}/merge - - uses: cachix/install-nix-action@v20 + - uses: cachix/install-nix-action@v21 with: # explicitly enable sandbox extra_nix_config: sandbox = true diff --git a/.github/workflows/manual-rendering.yml b/.github/workflows/manual-rendering.yml index ad47776086225..dbaea583ef7de 100644 --- a/.github/workflows/manual-rendering.yml +++ b/.github/workflows/manual-rendering.yml @@ -18,7 +18,7 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v3 - - uses: cachix/install-nix-action@v20 + - uses: cachix/install-nix-action@v21 with: # explicitly enable sandbox extra_nix_config: sandbox = true diff --git a/.github/workflows/update-terraform-providers.yml b/.github/workflows/update-terraform-providers.yml index e0e68b4bf14aa..1276a0867aac0 100644 --- a/.github/workflows/update-terraform-providers.yml +++ b/.github/workflows/update-terraform-providers.yml @@ -17,7 +17,7 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v3 - - uses: cachix/install-nix-action@v20 + - uses: cachix/install-nix-action@v21 with: nix_path: nixpkgs=channel:nixpkgs-unstable - name: setup diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 82f8d022a92d7..1ba2ae48da4e5 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -106,17 +106,17 @@ git push origin feature --force-with-lease Follow these steps to backport a change into a release branch in compliance with the [commit policy](https://nixos.org/nixpkgs/manual/#submitting-changes-stable-release-branches). -You can add a label such as `backport release-22.11` to a PR, so that merging it will +You can add a label such as `backport release-23.05` to a PR, so that merging it will automatically create a backport (via [a GitHub Action](.github/workflows/backport.yml)). -This also works for PR's that have already been merged, and might take a couple of minutes to trigger. +This also works for pull requests that have already been merged, and might take a couple of minutes to trigger. You can also create the backport manually: 1. Take note of the commits in which the change was introduced into `master` branch. -2. Check out the target _release branch_, e.g. `release-22.11`. Do not use a _channel branch_ like `nixos-22.11` or `nixpkgs-22.11-darwin`. +2. Check out the target _release branch_, e.g. `release-23.05`. Do not use a _channel branch_ like `nixos-23.05` or `nixpkgs-23.05-darwin`. 3. Create a branch for your change, e.g. `git checkout -b backport`. 4. When the reason to backport is not obvious from the original commit message, use `git cherry-pick -xe <original commit>` and add a reason. Otherwise use `git cherry-pick -x <original commit>`. That's fine for minor version updates that only include security and bug fixes, commits that fixes an otherwise broken package or similar. Please also ensure the commits exists on the master branch; in the case of squashed or rebased merges, the commit hash will change and the new commits can be found in the merge message at the bottom of the master pull request. -5. Push to GitHub and open a backport pull request. Make sure to select the release branch (e.g. `release-22.11`) as the target branch of the pull request, and link to the pull request in which the original change was committed to `master`. The pull request title should be the commit title with the release version as prefix, e.g. `[22.11]`. +5. Push to GitHub and open a backport pull request. Make sure to select the release branch (e.g. `release-23.05`) as the target branch of the pull request, and link to the pull request in which the original change was committed to `master`. The pull request title should be the commit title with the release version as prefix, e.g. `[23.05]`. 6. When the backport pull request is merged and you have the necessary privileges you can also replace the label `9.needs: port to stable` with `8.has: port to stable` on the original pull request. This way maintainers can keep track of missing backports easier. ## Criteria for Backporting changes @@ -128,7 +128,7 @@ Anything that does not cause user or downstream dependency regressions can be ba - Services which require a client to be up-to-date regardless. (E.g. `spotify`, `steam`, or `discord`) - Security critical applications (E.g. `firefox`) -## Generating 23.05 Release Notes +## Generating 23.11 Release Notes <!-- note: title unchanged even though we don't need regeneration because extant PRs will link here. definitely change the title for 23.11 though. @@ -136,10 +136,10 @@ PRs will link here. definitely change the title for 23.11 though. Documentation in nixpkgs is transitioning to a markdown-centric workflow. In the past release notes required a translation step to convert from markdown to a compatible docbook document, but this is no longer necessary. -Steps for updating 23.05 Release notes: +Steps for updating 23.11 Release notes: -1. Edit `nixos/doc/manual/release-notes/rl-2305.section.md` with the desired changes -2. Commit changes to `rl-2305.section.md`. +1. Edit `nixos/doc/manual/release-notes/rl-2311.section.md` with the desired changes +2. Commit changes to `rl-2311.section.md`. ## Reviewing contributions diff --git a/README.md b/README.md index 4c6ad635164b2..d840e2a8c5031 100644 --- a/README.md +++ b/README.md @@ -51,9 +51,9 @@ Nixpkgs and NixOS are built and tested by our continuous integration system, [Hydra](https://hydra.nixos.org/). * [Continuous package builds for unstable/master](https://hydra.nixos.org/jobset/nixos/trunk-combined) -* [Continuous package builds for the NixOS 22.11 release](https://hydra.nixos.org/jobset/nixos/release-22.11) +* [Continuous package builds for the NixOS 23.05 release](https://hydra.nixos.org/jobset/nixos/release-23.05) * [Tests for unstable/master](https://hydra.nixos.org/job/nixos/trunk-combined/tested#tabs-constituents) -* [Tests for the NixOS 22.11 release](https://hydra.nixos.org/job/nixos/release-22.11/tested#tabs-constituents) +* [Tests for the NixOS 23.05 release](https://hydra.nixos.org/job/nixos/release-23.05/tested#tabs-constituents) Artifacts successfully built with Hydra are published to cache at https://cache.nixos.org/. When successful build and test criteria are diff --git a/doc/builders/fetchers.chapter.md b/doc/builders/fetchers.chapter.md index b86fffa460423..4d4f3f427cd49 100644 --- a/doc/builders/fetchers.chapter.md +++ b/doc/builders/fetchers.chapter.md @@ -132,11 +132,16 @@ A number of fetcher functions wrap part of `fetchurl` and `fetchzip`. They are m `fetchFromGitHub` expects four arguments. `owner` is a string corresponding to the GitHub user or organization that controls this repository. `repo` corresponds to the name of the software repository. These are located at the top of every GitHub HTML page as `owner`/`repo`. `rev` corresponds to the Git commit hash or tag (e.g `v1.0`) that will be downloaded from Git. Finally, `hash` corresponds to the hash of the extracted directory. Again, other hash algorithms are also available, but `hash` is currently preferred. +To use a different GitHub instance, use `githubBase` (defaults to `"github.com"`). + `fetchFromGitHub` uses `fetchzip` to download the source archive generated by GitHub for the specified revision. If `leaveDotGit`, `deepClone` or `fetchSubmodules` are set to `true`, `fetchFromGitHub` will use `fetchgit` instead. Refer to its section for documentation of these options. ## `fetchFromGitLab` {#fetchfromgitlab} -This is used with GitLab repositories. The arguments expected are very similar to `fetchFromGitHub` above. +This is used with GitLab repositories. It behaves similarly to `fetchFromGitHub`, and expects `owner`, `repo`, `rev`, and `hash`. + +To use a specific GitLab instance, use `domain` (defaults to `"gitlab.com"`). + ## `fetchFromGitiles` {#fetchfromgitiles} @@ -144,7 +149,7 @@ This is used with Gitiles repositories. The arguments expected are similar to `f ## `fetchFromBitbucket` {#fetchfrombitbucket} -This is used with BitBucket repositories. The arguments expected are very similar to fetchFromGitHub above. +This is used with BitBucket repositories. The arguments expected are very similar to `fetchFromGitHub` above. ## `fetchFromSavannah` {#fetchfromsavannah} diff --git a/doc/languages-frameworks/dhall.section.md b/doc/languages-frameworks/dhall.section.md index 83fe2e9ae0c42..846b8cfd3163b 100644 --- a/doc/languages-frameworks/dhall.section.md +++ b/doc/languages-frameworks/dhall.section.md @@ -307,12 +307,12 @@ $ nix-env --install --attr haskellPackages.dhall-nixpkgs $ nix-env --install --attr nix-prefetch-git # Used by dhall-to-nixpkgs -$ dhall-to-nixpkgs github https://github.com/Gabriel439/dhall-semver.git +$ dhall-to-nixpkgs github https://github.com/Gabriella439/dhall-semver.git { buildDhallGitHubPackage, Prelude }: buildDhallGitHubPackage { name = "dhall-semver"; githubBase = "github.com"; - owner = "Gabriel439"; + owner = "Gabriella439"; repo = "dhall-semver"; rev = "2d44ae605302ce5dc6c657a1216887fbb96392a4"; fetchSubmodules = false; diff --git a/doc/languages-frameworks/haskell.section.md b/doc/languages-frameworks/haskell.section.md index a36843c97c61e..87da2e63663a1 100644 --- a/doc/languages-frameworks/haskell.section.md +++ b/doc/languages-frameworks/haskell.section.md @@ -276,6 +276,15 @@ Defaults to `true`. : Whether to generate an index for interactive navigation of the HTML documentation. Defaults to `true` if supported. +`doInstallIntermediates` +: Whether to install intermediate build products (files written to `dist/build` +by GHC during the build process). With `enableSeparateIntermediatesOutput`, +these files are instead installed to [a separate `intermediates` +output.][multiple-outputs] The output can then be passed into a future build of +the same package with the `previousIntermediates` argument to support +incremental builds. See [“Incremental builds”](#haskell-incremental-builds) for +more information. Defaults to `false`. + `enableLibraryProfiling` : Whether to enable [profiling][profiling] for libraries contained in the package. Enabled by default if supported. @@ -371,6 +380,12 @@ Defaults to `false`. : Whether to install documentation to a separate `doc` output. Is automatically enabled if `doHaddock` is `true`. +`enableSeparateIntermediatesOutput` +: When `doInstallIntermediates` is true, whether to install intermediate build +products to a separate `intermediates` output. See [“Incremental +builds”](#haskell-incremental-builds) for more information. Defaults to +`false`. + `allowInconsistentDependencies` : If enabled, allow multiple versions of the same Haskell package in the dependency tree at configure time. Often in such a situation compilation would @@ -381,6 +396,11 @@ later fail because of type mismatches. Defaults to `false`. when loading the library in the REPL, but requires extra build time and disk space. Defaults to `false`. +`previousIntermediates` +: If non-null, intermediate build artifacts are copied from this input to +`dist/build` before performing compiling. See [“Incremental +builds”](#haskell-incremental-builds) for more information. Defaults to `null`. + `buildTarget` : Name of the executable or library to build and install. If unset, all available targets are built and installed. @@ -496,6 +516,54 @@ the [Meta-attributes section](#chap-meta) for their documentation. * `broken` * `hydraPlatforms` +### Incremental builds {#haskell-incremental-builds} + +`haskellPackages.mkDerivation` supports incremental builds for GHC 9.4 and +newer with the `doInstallIntermediates`, `enableSeparateIntermediatesOutput`, +and `previousIntermediates` arguments. + +The basic idea is to first perform a full build of the package in question, +save its intermediate build products for later, and then copy those build +products into the build directory of an incremental build performed later. +Then, GHC will use those build artifacts to avoid recompiling unchanged +modules. + +For more detail on how to store and use incremental build products, see +[Gabriella Gonzalez’ blog post “Nixpkgs support for incremental Haskell +builds”.][incremental-builds] motivation behind this feature. + +An incremental build for [the `turtle` package][turtle] can be performed like +so: + +```nix +let + pkgs = import <nixpkgs> {}; + inherit (pkgs) haskell; + inherit (haskell.lib.compose) overrideCabal; + + # Incremental builds work with GHC >=9.4. + turtle = haskell.packages.ghc944.turtle; + + # This will do a full build of `turtle`, while writing the intermediate build products + # (compiled modules, etc.) to the `intermediates` output. + turtle-full-build-with-incremental-output = overrideCabal (drv: { + doInstallIntermediates = true; + enableSeparateIntermediatesOutput = true; + }) turtle; + + # This will do an incremental build of `turtle` by copying the previously + # compiled modules and intermediate build products into the source tree + # before running the build. + # + # GHC will then naturally pick up and reuse these products, making this build + # complete much more quickly than the previous one. + turtle-incremental-build = overrideCabal (drv: { + previousIntermediates = turtle-full-build-with-incremental-output.intermediates; + }) turtle; +in + turtle-incremental-build +``` + ## Development environments {#haskell-development-environments} In addition to building and installing Haskell software, nixpkgs can also @@ -989,7 +1057,7 @@ benchmark component. `dontBenchmark drv` : Set `doBenchmark` to `false` for `drv`. -`setBuildTargets list drv` +`setBuildTargets drv list` : Sets the `buildTarget` argument for `drv` so that the targets specified in `list` are built. `doCoverage drv` @@ -1083,8 +1151,11 @@ on the issue linked above. [haskell.nix]: https://input-output-hk.github.io/haskell.nix/index.html [HLS user guide]: https://haskell-language-server.readthedocs.io/en/latest/configuration.html#configuring-your-editor [hoogle]: https://wiki.haskell.org/Hoogle +[incremental-builds]: https://www.haskellforall.com/2022/12/nixpkgs-support-for-incremental-haskell.html [jailbreak-cabal]: https://github.com/NixOS/jailbreak-cabal/ +[multiple-outputs]: https://nixos.org/manual/nixpkgs/stable/#chap-multiple-output [optparse-applicative-completions]: https://github.com/pcapriotti/optparse-applicative/blob/7726b63796aa5d0df82e926d467f039b78ca09e2/README.md#bash-zsh-and-fish-completions [profiling-detail]: https://cabal.readthedocs.io/en/latest/cabal-project.html#cfg-field-profiling-detail [profiling]: https://downloads.haskell.org/~ghc/latest/docs/html/users_guide/profiling.html [search.nixos.org]: https://search.nixos.org +[turtle]: https://hackage.haskell.org/package/turtle diff --git a/doc/languages-frameworks/python.section.md b/doc/languages-frameworks/python.section.md index 9cd80b9385428..10f5e3938ce49 100644 --- a/doc/languages-frameworks/python.section.md +++ b/doc/languages-frameworks/python.section.md @@ -1514,10 +1514,6 @@ Note: There is a boolean value `lib.inNixShell` set to `true` if nix-shell is in Packages inside nixpkgs are written by hand. However many tools exist in community to help save time. No tool is preferred at the moment. -- [pypi2nix](https://github.com/nix-community/pypi2nix): Generate Nix - expressions for your Python project. Note that [sharing derivations from - pypi2nix with nixpkgs is possible but not - encouraged](https://github.com/nix-community/pypi2nix/issues/222#issuecomment-443497376). - [nixpkgs-pytools](https://github.com/nix-community/nixpkgs-pytools) - [poetry2nix](https://github.com/nix-community/poetry2nix) diff --git a/doc/stdenv/meta.chapter.md b/doc/stdenv/meta.chapter.md index 2e0cae67d50d5..a21dfd0821af5 100644 --- a/doc/stdenv/meta.chapter.md +++ b/doc/stdenv/meta.chapter.md @@ -182,7 +182,7 @@ runCommand "my-package-test" { ### `timeout` {#var-meta-timeout} -A timeout (in seconds) for building the derivation. If the derivation takes longer than this time to build, it can fail due to breaking the timeout. However, all computers do not have the same computing power, hence some builders may decide to apply a multiplicative factor to this value. When filling this value in, try to keep it approximately consistent with other values already present in `nixpkgs`. +A timeout (in seconds) for building the derivation. If the derivation takes longer than this time to build, Hydra will fail it due to breaking the timeout. However, all computers do not have the same computing power, hence some builders may decide to apply a multiplicative factor to this value. When filling this value in, try to keep it approximately consistent with other values already present in `nixpkgs`. `meta` attributes are not stored in the instantiated derivation. Therefore, this setting may be lost when the package is used as a dependency. diff --git a/lib/attrsets.nix b/lib/attrsets.nix index 1f11eaaa823d9..73b71f68db799 100644 --- a/lib/attrsets.nix +++ b/lib/attrsets.nix @@ -123,7 +123,11 @@ rec { { x = "a"; y = "b"; } => { x = "a"; xa = "a"; y = "b"; yb = "b"; } */ - concatMapAttrs = f: flip pipe [ (mapAttrs f) attrValues (foldl' mergeAttrs { }) ]; + concatMapAttrs = f: v: + foldl' mergeAttrs { } + (attrValues + (mapAttrs f v) + ); /* Update or set specific paths of an attribute set. diff --git a/lib/derivations.nix b/lib/derivations.nix index dce98b46ddb98..5b7ed1868e866 100644 --- a/lib/derivations.nix +++ b/lib/derivations.nix @@ -31,7 +31,7 @@ in (lazyDerivation { inherit derivation; meta.foo = true; }).meta - In these expressions, it `derivation` _will_ be evaluated: + In these expressions, `derivation` _will_ be evaluated: "${lazyDerivation { inherit derivation }}" diff --git a/lib/lists.nix b/lib/lists.nix index 2186cd4a79f60..5d9af0cf7114e 100644 --- a/lib/lists.nix +++ b/lib/lists.nix @@ -198,8 +198,38 @@ rec { default: # Input list list: - let found = filter pred list; - in if found == [] then default else head found; + let + # A naive recursive implementation would be much simpler, but + # would also overflow the evaluator stack. We use `foldl'` as a workaround + # because it reuses the same stack space, evaluating the function for one + # element after another. We can't return early, so this means that we + # sacrifice early cutoff, but that appears to be an acceptable cost. A + # clever scheme with "exponential search" is possible, but appears over- + # engineered for now. See https://github.com/NixOS/nixpkgs/pull/235267 + + # Invariant: + # - if index < 0 then el == elemAt list (- index - 1) and all elements before el didn't satisfy pred + # - if index >= 0 then pred (elemAt list index) and all elements before (elemAt list index) didn't satisfy pred + # + # We start with index -1 and the 0'th element of the list, which satisfies the invariant + resultIndex = foldl' (index: el: + if index < 0 then + # No match yet before the current index, we need to check the element + if pred el then + # We have a match! Turn it into the actual index to prevent future iterations from modifying it + - index - 1 + else + # Still no match, update the index to the next element (we're counting down, so minus one) + index - 1 + else + # There's already a match, propagate the index without evaluating anything + index + ) (-1) list; + in + if resultIndex < 0 then + default + else + elemAt list resultIndex; /* Return true if function `pred` returns true for at least one element of `list`. diff --git a/lib/systems/doubles.nix b/lib/systems/doubles.nix index 6d2f015674e04..66bf3d872bee9 100644 --- a/lib/systems/doubles.nix +++ b/lib/systems/doubles.nix @@ -27,9 +27,9 @@ let # Linux "aarch64-linux" "armv5tel-linux" "armv6l-linux" "armv7a-linux" "armv7l-linux" "i686-linux" "loongarch64-linux" "m68k-linux" "microblaze-linux" - "microblazeel-linux" "mipsel-linux" "mips64el-linux" "powerpc64-linux" - "powerpc64le-linux" "riscv32-linux" "riscv64-linux" "s390-linux" - "s390x-linux" "x86_64-linux" + "microblazeel-linux" "mips-linux" "mips64-linux" "mips64el-linux" + "mipsel-linux" "powerpc64-linux" "powerpc64le-linux" "riscv32-linux" + "riscv64-linux" "s390-linux" "s390x-linux" "x86_64-linux" # MMIXware "mmix-mmixware" diff --git a/lib/systems/examples.nix b/lib/systems/examples.nix index 4edbf4df4b611..45b95c150fce1 100644 --- a/lib/systems/examples.nix +++ b/lib/systems/examples.nix @@ -91,22 +91,16 @@ rec { } // platforms.fuloong2f_n32; # can execute on 32bit chip - mips-linux-gnu = { config = "mips-unknown-linux-gnu"; } // platforms.gcc_mips32r2_o32; - mipsel-linux-gnu = { config = "mipsel-unknown-linux-gnu"; } // platforms.gcc_mips32r2_o32; - mipsisa32r6-linux-gnu = { config = "mipsisa32r6-unknown-linux-gnu"; } // platforms.gcc_mips32r6_o32; - mipsisa32r6el-linux-gnu = { config = "mipsisa32r6el-unknown-linux-gnu"; } // platforms.gcc_mips32r6_o32; + mips-linux-gnu = { config = "mips-unknown-linux-gnu"; } // platforms.gcc_mips32r2_o32; + mipsel-linux-gnu = { config = "mipsel-unknown-linux-gnu"; } // platforms.gcc_mips32r2_o32; # require 64bit chip (for more registers, 64-bit floating point, 64-bit "long long") but use 32bit pointers - mips64-linux-gnuabin32 = { config = "mips64-unknown-linux-gnuabin32"; } // platforms.gcc_mips64r2_n32; - mips64el-linux-gnuabin32 = { config = "mips64el-unknown-linux-gnuabin32"; } // platforms.gcc_mips64r2_n32; - mipsisa64r6-linux-gnuabin32 = { config = "mipsisa64r6-unknown-linux-gnuabin32"; } // platforms.gcc_mips64r6_n32; - mipsisa64r6el-linux-gnuabin32 = { config = "mipsisa64r6el-unknown-linux-gnuabin32"; } // platforms.gcc_mips64r6_n32; + mips64-linux-gnuabin32 = { config = "mips64-unknown-linux-gnuabin32"; } // platforms.gcc_mips64r2_n32; + mips64el-linux-gnuabin32 = { config = "mips64el-unknown-linux-gnuabin32"; } // platforms.gcc_mips64r2_n32; # 64bit pointers - mips64-linux-gnuabi64 = { config = "mips64-unknown-linux-gnuabi64"; } // platforms.gcc_mips64r2_64; - mips64el-linux-gnuabi64 = { config = "mips64el-unknown-linux-gnuabi64"; } // platforms.gcc_mips64r2_64; - mipsisa64r6-linux-gnuabi64 = { config = "mipsisa64r6-unknown-linux-gnuabi64"; } // platforms.gcc_mips64r6_64; - mipsisa64r6el-linux-gnuabi64 = { config = "mipsisa64r6el-unknown-linux-gnuabi64"; } // platforms.gcc_mips64r6_64; + mips64-linux-gnuabi64 = { config = "mips64-unknown-linux-gnuabi64"; } // platforms.gcc_mips64r2_64; + mips64el-linux-gnuabi64 = { config = "mips64el-unknown-linux-gnuabi64"; } // platforms.gcc_mips64r2_64; muslpi = raspberryPi // { config = "armv6l-unknown-linux-musleabihf"; diff --git a/lib/systems/parse.nix b/lib/systems/parse.nix index ea8e1ff8fcf07..6eb4f27cc5194 100644 --- a/lib/systems/parse.nix +++ b/lib/systems/parse.nix @@ -91,14 +91,10 @@ rec { microblaze = { bits = 32; significantByte = bigEndian; family = "microblaze"; }; microblazeel = { bits = 32; significantByte = littleEndian; family = "microblaze"; }; - mips = { bits = 32; significantByte = bigEndian; family = "mips"; }; - mipsel = { bits = 32; significantByte = littleEndian; family = "mips"; }; - mipsisa32r6 = { bits = 32; significantByte = bigEndian; family = "mips"; }; - mipsisa32r6el = { bits = 32; significantByte = littleEndian; family = "mips"; }; - mips64 = { bits = 64; significantByte = bigEndian; family = "mips"; }; - mips64el = { bits = 64; significantByte = littleEndian; family = "mips"; }; - mipsisa64r6 = { bits = 64; significantByte = bigEndian; family = "mips"; }; - mipsisa64r6el = { bits = 64; significantByte = littleEndian; family = "mips"; }; + mips = { bits = 32; significantByte = bigEndian; family = "mips"; }; + mipsel = { bits = 32; significantByte = littleEndian; family = "mips"; }; + mips64 = { bits = 64; significantByte = bigEndian; family = "mips"; }; + mips64el = { bits = 64; significantByte = littleEndian; family = "mips"; }; mmix = { bits = 64; significantByte = bigEndian; family = "mmix"; }; diff --git a/lib/tests/filesystem.sh b/lib/tests/filesystem.sh index 4a5ffeb124312..cfd333d0001b8 100755 --- a/lib/tests/filesystem.sh +++ b/lib/tests/filesystem.sh @@ -35,58 +35,50 @@ touch regular ln -s target symlink mkfifo fifo -checkPathType() { - local path=$1 - local expectedPathType=$2 - local actualPathType=$(nix-instantiate --eval --strict --json 2>&1 \ - -E '{ path }: let lib = import <nixpkgs/lib>; in lib.filesystem.pathType path' \ - --argstr path "$path") - if [[ "$actualPathType" != "$expectedPathType" ]]; then - die "lib.filesystem.pathType \"$path\" == $actualPathType, but $expectedPathType was expected" +expectSuccess() { + local expr=$1 + local expectedResultRegex=$2 + if ! result=$(nix-instantiate --eval --strict --json \ + --expr "with (import <nixpkgs/lib>).filesystem; $expr"); then + die "$expr failed to evaluate, but it was expected to succeed" + fi + if [[ ! "$result" =~ $expectedResultRegex ]]; then + die "$expr == $result, but $expectedResultRegex was expected" fi } -checkPathType "/" '"directory"' -checkPathType "$PWD/directory" '"directory"' -checkPathType "$PWD/regular" '"regular"' -checkPathType "$PWD/symlink" '"symlink"' -checkPathType "$PWD/fifo" '"unknown"' -checkPathType "$PWD/non-existent" "error: evaluation aborted with the following error message: 'lib.filesystem.pathType: Path $PWD/non-existent does not exist.'" - -checkPathIsDirectory() { - local path=$1 - local expectedIsDirectory=$2 - local actualIsDirectory=$(nix-instantiate --eval --strict --json 2>&1 \ - -E '{ path }: let lib = import <nixpkgs/lib>; in lib.filesystem.pathIsDirectory path' \ - --argstr path "$path") - if [[ "$actualIsDirectory" != "$expectedIsDirectory" ]]; then - die "lib.filesystem.pathIsDirectory \"$path\" == $actualIsDirectory, but $expectedIsDirectory was expected" +expectFailure() { + local expr=$1 + local expectedErrorRegex=$2 + if result=$(nix-instantiate --eval --strict --json 2>"$work/stderr" \ + --expr "with (import <nixpkgs/lib>).filesystem; $expr"); then + die "$expr evaluated successfully to $result, but it was expected to fail" + fi + if [[ ! "$(<"$work/stderr")" =~ $expectedErrorRegex ]]; then + die "Error was $(<"$work/stderr"), but $expectedErrorRegex was expected" fi } -checkPathIsDirectory "/" "true" -checkPathIsDirectory "$PWD/directory" "true" -checkPathIsDirectory "$PWD/regular" "false" -checkPathIsDirectory "$PWD/symlink" "false" -checkPathIsDirectory "$PWD/fifo" "false" -checkPathIsDirectory "$PWD/non-existent" "false" +expectSuccess "pathType /." '"directory"' +expectSuccess "pathType $PWD/directory" '"directory"' +expectSuccess "pathType $PWD/regular" '"regular"' +expectSuccess "pathType $PWD/symlink" '"symlink"' +expectSuccess "pathType $PWD/fifo" '"unknown"' +# Different errors depending on whether the builtins.readFilePath primop is available or not +expectFailure "pathType $PWD/non-existent" "error: (evaluation aborted with the following error message: 'lib.filesystem.pathType: Path $PWD/non-existent does not exist.'|getting status of '$PWD/non-existent': No such file or directory)" -checkPathIsRegularFile() { - local path=$1 - local expectedIsRegularFile=$2 - local actualIsRegularFile=$(nix-instantiate --eval --strict --json 2>&1 \ - -E '{ path }: let lib = import <nixpkgs/lib>; in lib.filesystem.pathIsRegularFile path' \ - --argstr path "$path") - if [[ "$actualIsRegularFile" != "$expectedIsRegularFile" ]]; then - die "lib.filesystem.pathIsRegularFile \"$path\" == $actualIsRegularFile, but $expectedIsRegularFile was expected" - fi -} +expectSuccess "pathIsDirectory /." "true" +expectSuccess "pathIsDirectory $PWD/directory" "true" +expectSuccess "pathIsDirectory $PWD/regular" "false" +expectSuccess "pathIsDirectory $PWD/symlink" "false" +expectSuccess "pathIsDirectory $PWD/fifo" "false" +expectSuccess "pathIsDirectory $PWD/non-existent" "false" -checkPathIsRegularFile "/" "false" -checkPathIsRegularFile "$PWD/directory" "false" -checkPathIsRegularFile "$PWD/regular" "true" -checkPathIsRegularFile "$PWD/symlink" "false" -checkPathIsRegularFile "$PWD/fifo" "false" -checkPathIsRegularFile "$PWD/non-existent" "false" +expectSuccess "pathIsRegularFile /." "false" +expectSuccess "pathIsRegularFile $PWD/directory" "false" +expectSuccess "pathIsRegularFile $PWD/regular" "true" +expectSuccess "pathIsRegularFile $PWD/symlink" "false" +expectSuccess "pathIsRegularFile $PWD/fifo" "false" +expectSuccess "pathIsRegularFile $PWD/non-existent" "false" echo >&2 tests ok diff --git a/lib/tests/misc.nix b/lib/tests/misc.nix index 231f19c513eb2..ce980436c1bcb 100644 --- a/lib/tests/misc.nix +++ b/lib/tests/misc.nix @@ -518,6 +518,46 @@ runTests { expected = false; }; + testFindFirstExample1 = { + expr = findFirst (x: x > 3) 7 [ 1 6 4 ]; + expected = 6; + }; + + testFindFirstExample2 = { + expr = findFirst (x: x > 9) 7 [ 1 6 4 ]; + expected = 7; + }; + + testFindFirstEmpty = { + expr = findFirst (abort "when the list is empty, the predicate is not needed") null []; + expected = null; + }; + + testFindFirstSingleMatch = { + expr = findFirst (x: x == 5) null [ 5 ]; + expected = 5; + }; + + testFindFirstSingleDefault = { + expr = findFirst (x: false) null [ (abort "if the predicate doesn't access the value, it must not be evaluated") ]; + expected = null; + }; + + testFindFirstNone = { + expr = builtins.tryEval (findFirst (x: x == 2) null [ 1 (throw "the last element must be evaluated when there's no match") ]); + expected = { success = false; value = false; }; + }; + + # Makes sure that the implementation doesn't cause a stack overflow + testFindFirstBig = { + expr = findFirst (x: x == 1000000) null (range 0 1000000); + expected = 1000000; + }; + + testFindFirstLazy = { + expr = findFirst (x: x == 1) 7 [ 1 (abort "list elements after the match must not be evaluated") ]; + expected = 1; + }; # ATTRSETS diff --git a/lib/tests/modules.sh b/lib/tests/modules.sh index 7fdc3d3d81aaf..7aebba6b589eb 100755 --- a/lib/tests/modules.sh +++ b/lib/tests/modules.sh @@ -378,7 +378,7 @@ checkConfigOutput '^{ }$' config.sub.nixosOk ./class-check.nix checkConfigError 'The module .*/module-class-is-darwin.nix was imported into nixos instead of darwin.' config.sub.nixosFail.config ./class-check.nix # submoduleWith type merge with different class -checkConfigError 'error: A submoduleWith option is declared multiple times with conflicting class values "darwin" and "nixos".' config.sub.mergeFail.config ./class-check.nix +checkConfigError 'A submoduleWith option is declared multiple times with conflicting class values "darwin" and "nixos".' config.sub.mergeFail.config ./class-check.nix # _type check checkConfigError 'Could not load a value as a module, because it is of type "flake", in file .*/module-imports-_type-check.nix' config.ok.config ./module-imports-_type-check.nix diff --git a/lib/tests/release.nix b/lib/tests/release.nix index f5c6e81030caf..c3bf58db241f8 100644 --- a/lib/tests/release.nix +++ b/lib/tests/release.nix @@ -2,53 +2,63 @@ # Don't test properties of pkgs.lib, but rather the lib in the parent directory pkgs ? import ../.. {} // { lib = throw "pkgs.lib accessed, but the lib tests should use nixpkgs' lib path directly!"; }, nix ? pkgs.nix, + nixVersions ? [ pkgs.nixVersions.minimum nix pkgs.nixVersions.unstable ], }: -pkgs.runCommand "nixpkgs-lib-tests" { - buildInputs = [ - (import ./check-eval.nix) - (import ./maintainers.nix { - inherit pkgs; - lib = import ../.; - }) - (import ./teams.nix { - inherit pkgs; - lib = import ../.; - }) - (import ../path/tests { - inherit pkgs; - }) - ]; - nativeBuildInputs = [ - nix - ]; - strictDeps = true; -} '' - datadir="${nix}/share" - export TEST_ROOT=$(pwd)/test-tmp - export NIX_BUILD_HOOK= - export NIX_CONF_DIR=$TEST_ROOT/etc - export NIX_LOCALSTATE_DIR=$TEST_ROOT/var - export NIX_LOG_DIR=$TEST_ROOT/var/log/nix - export NIX_STATE_DIR=$TEST_ROOT/var/nix - export NIX_STORE_DIR=$TEST_ROOT/store - export PAGER=cat - cacheDir=$TEST_ROOT/binary-cache - - mkdir -p $NIX_CONF_DIR - echo "experimental-features = nix-command" >> $NIX_CONF_DIR/nix.conf - - nix-store --init - - cp -r ${../.} lib - echo "Running lib/tests/modules.sh" - bash lib/tests/modules.sh - - echo "Running lib/tests/filesystem.sh" - TEST_LIB=$PWD/lib bash lib/tests/filesystem.sh - - echo "Running lib/tests/sources.sh" - TEST_LIB=$PWD/lib bash lib/tests/sources.sh - - touch $out -'' +let + testWithNix = nix: + pkgs.runCommand "nixpkgs-lib-tests-nix-${nix.version}" { + buildInputs = [ + (import ./check-eval.nix) + (import ./maintainers.nix { + inherit pkgs; + lib = import ../.; + }) + (import ./teams.nix { + inherit pkgs; + lib = import ../.; + }) + (import ../path/tests { + inherit pkgs; + }) + ]; + nativeBuildInputs = [ + nix + ]; + strictDeps = true; + } '' + datadir="${nix}/share" + export TEST_ROOT=$(pwd)/test-tmp + export NIX_BUILD_HOOK= + export NIX_CONF_DIR=$TEST_ROOT/etc + export NIX_LOCALSTATE_DIR=$TEST_ROOT/var + export NIX_LOG_DIR=$TEST_ROOT/var/log/nix + export NIX_STATE_DIR=$TEST_ROOT/var/nix + export NIX_STORE_DIR=$TEST_ROOT/store + export PAGER=cat + cacheDir=$TEST_ROOT/binary-cache + + mkdir -p $NIX_CONF_DIR + echo "experimental-features = nix-command" >> $NIX_CONF_DIR/nix.conf + + nix-store --init + + cp -r ${../.} lib + echo "Running lib/tests/modules.sh" + bash lib/tests/modules.sh + + echo "Running lib/tests/filesystem.sh" + TEST_LIB=$PWD/lib bash lib/tests/filesystem.sh + + echo "Running lib/tests/sources.sh" + TEST_LIB=$PWD/lib bash lib/tests/sources.sh + + mkdir $out + echo success > $out/${nix.version} + ''; + +in + pkgs.symlinkJoin { + name = "nixpkgs-lib-tests"; + paths = map testWithNix nixVersions; + } diff --git a/lib/tests/sources.sh b/lib/tests/sources.sh index a7f490a79d744..cda77aa96b288 100755 --- a/lib/tests/sources.sh +++ b/lib/tests/sources.sh @@ -23,14 +23,19 @@ clean_up() { trap clean_up EXIT cd "$work" -touch {README.md,module.o,foo.bar} +# Crudely unquotes a JSON string by just taking everything between the first and the second quote. +# We're only using this for resulting /nix/store paths, which can't contain " anyways, +# nor can they contain any other characters that would need to be escaped specially in JSON +# This way we don't need to add a dependency on e.g. jq +crudeUnquoteJSON() { + cut -d \" -f2 +} -# nix-instantiate doesn't write out the source, only computing the hash, so -# this uses the experimental nix command instead. +touch {README.md,module.o,foo.bar} -dir="$(nix eval --impure --raw --expr '(with import <nixpkgs/lib>; "${ +dir="$(nix-instantiate --eval --strict --read-write-mode --json --expr '(with import <nixpkgs/lib>; "${ cleanSource ./. -}")')" +}")' | crudeUnquoteJSON)" (cd "$dir"; find) | sort -f | diff -U10 - <(cat <<EOF . ./foo.bar @@ -39,9 +44,9 @@ EOF ) || die "cleanSource 1" -dir="$(nix eval --impure --raw --expr '(with import <nixpkgs/lib>; "${ +dir="$(nix-instantiate --eval --strict --read-write-mode --json --expr '(with import <nixpkgs/lib>; "${ cleanSourceWith { src = '"$work"'; filter = path: type: ! hasSuffix ".bar" path; } -}")')" +}")' | crudeUnquoteJSON)" (cd "$dir"; find) | sort -f | diff -U10 - <(cat <<EOF . ./module.o @@ -49,9 +54,9 @@ dir="$(nix eval --impure --raw --expr '(with import <nixpkgs/lib>; "${ EOF ) || die "cleanSourceWith 1" -dir="$(nix eval --impure --raw --expr '(with import <nixpkgs/lib>; "${ +dir="$(nix-instantiate --eval --strict --read-write-mode --json --expr '(with import <nixpkgs/lib>; "${ cleanSourceWith { src = cleanSource '"$work"'; filter = path: type: ! hasSuffix ".bar" path; } -}")')" +}")' | crudeUnquoteJSON)" (cd "$dir"; find) | sort -f | diff -U10 - <(cat <<EOF . ./README.md diff --git a/lib/tests/systems.nix b/lib/tests/systems.nix index 792aa94f3356e..2afe128c4208a 100644 --- a/lib/tests/systems.nix +++ b/lib/tests/systems.nix @@ -18,7 +18,7 @@ with lib.systems.doubles; lib.runTests { testarm = mseteq arm [ "armv5tel-linux" "armv6l-linux" "armv6l-netbsd" "armv6l-none" "armv7a-linux" "armv7a-netbsd" "armv7l-linux" "armv7l-netbsd" "arm-none" "armv7a-darwin" ]; testarmv7 = mseteq armv7 [ "armv7a-darwin" "armv7a-linux" "armv7l-linux" "armv7a-netbsd" "armv7l-netbsd" ]; testi686 = mseteq i686 [ "i686-linux" "i686-freebsd13" "i686-genode" "i686-netbsd" "i686-openbsd" "i686-cygwin" "i686-windows" "i686-none" "i686-darwin" ]; - testmips = mseteq mips [ "mips64el-linux" "mipsel-linux" "mipsel-netbsd" ]; + testmips = mseteq mips [ "mips-linux" "mips64-linux" "mips64el-linux" "mipsel-linux" "mipsel-netbsd" ]; testmmix = mseteq mmix [ "mmix-mmixware" ]; testpower = mseteq power [ "powerpc-netbsd" "powerpc-none" "powerpc64-linux" "powerpc64le-linux" "powerpcle-none" ]; testriscv = mseteq riscv [ "riscv32-linux" "riscv64-linux" "riscv32-netbsd" "riscv64-netbsd" "riscv32-none" "riscv64-none" ]; @@ -34,7 +34,7 @@ with lib.systems.doubles; lib.runTests { testredox = mseteq redox [ "x86_64-redox" ]; testgnu = mseteq gnu (linux /* ++ kfreebsd ++ ... */); testillumos = mseteq illumos [ "x86_64-solaris" ]; - testlinux = mseteq linux [ "aarch64-linux" "armv5tel-linux" "armv6l-linux" "armv7a-linux" "armv7l-linux" "i686-linux" "mips64el-linux" "mipsel-linux" "riscv32-linux" "riscv64-linux" "x86_64-linux" "powerpc64-linux" "powerpc64le-linux" "m68k-linux" "s390-linux" "s390x-linux" "microblaze-linux" "microblazeel-linux" "loongarch64-linux" ]; + testlinux = mseteq linux [ "aarch64-linux" "armv5tel-linux" "armv6l-linux" "armv7a-linux" "armv7l-linux" "i686-linux" "loongarch64-linux" "m68k-linux" "microblaze-linux" "microblazeel-linux" "mips-linux" "mips64-linux" "mips64el-linux" "mipsel-linux" "powerpc64-linux" "powerpc64le-linux" "riscv32-linux" "riscv64-linux" "s390-linux" "s390x-linux" "x86_64-linux" ]; testnetbsd = mseteq netbsd [ "aarch64-netbsd" "armv6l-netbsd" "armv7a-netbsd" "armv7l-netbsd" "i686-netbsd" "m68k-netbsd" "mipsel-netbsd" "powerpc-netbsd" "riscv32-netbsd" "riscv64-netbsd" "x86_64-netbsd" ]; testopenbsd = mseteq openbsd [ "i686-openbsd" "x86_64-openbsd" ]; testwindows = mseteq windows [ "i686-cygwin" "x86_64-cygwin" "i686-windows" "x86_64-windows" ]; diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix index aae3ad24214fe..7586a34a64f6d 100644 --- a/maintainers/maintainer-list.nix +++ b/maintainers/maintainer-list.nix @@ -177,6 +177,12 @@ githubId = 12578560; name = "Quinn Bohner"; }; + _8-bit-fox = { + email = "sebastian@markwaerter.de"; + github = "8-bit-fox"; + githubId = 43320117; + name = "Sebastian Marquardt"; + }; _9999years = { email = "rbt@fastmail.com"; github = "9999years"; @@ -303,6 +309,12 @@ githubId = 2321000; name = "Ruslan Babayev"; }; + abustany = { + email = "adrien@bustany.org"; + github = "abustany"; + githubId = 2526296; + name = "Adrien Bustany"; + }; acairncross = { email = "acairncross@gmail.com"; github = "acairncross"; @@ -1633,6 +1645,12 @@ fingerprint = "2688 0377 C31D 9E81 9BDF 83A8 C8C6 BDDB 3847 F72B"; }]; }; + azd325 = { + email = "tim.kleinschmidt@gmail.com"; + github = "Azd325"; + githubId = 426541; + name = "Tim Kleinschmidt"; + }; azuwis = { email = "azuwis@gmail.com"; github = "azuwis"; @@ -2931,7 +2949,7 @@ }; citadelcore = { email = "alex@arctarus.co.uk"; - github = "CitadelCore"; + github = "VertexA115"; githubId = 5567402; name = "Alex Zero"; keys = [{ @@ -4940,6 +4958,12 @@ githubId = 2512008; name = "Even Brenden"; }; + evilmav = { + email = "elenskiy.ilya@gmail.com"; + github = "evilmav"; + githubId = 6803717; + name = "Ilya Elenskiy"; + }; evils = { email = "evils.devils@protonmail.com"; matrix = "@evils:nixos.dev"; @@ -5253,6 +5277,12 @@ githubId = 2489598; name = "Felix Breidenstein"; }; + flemzord = { + email = "maxence@maireaux.fr"; + github = "flemzord"; + githubId = 1952914; + name = "Maxence Maireaux"; + }; flexagoon = { email = "flexagoon@pm.me"; github = "flexagoon"; @@ -5404,6 +5434,12 @@ githubId = 7551358; name = "Frede Emil"; }; + Freed-Wu = { + email = "wuzhenyu@ustc.edu"; + github = "Freed-Wu"; + githubId = 32936898; + name = "Wu Zhenyu"; + }; freezeboy = { github = "freezeboy"; githubId = 13279982; @@ -5507,7 +5543,7 @@ }; fuzen = { email = "me@fuzen.cafe"; - github = "Fuzen-py"; + github = "LovingMelody"; githubId = 17859309; name = "Fuzen"; }; @@ -5536,18 +5572,18 @@ githubId = 606000; name = "Gabriel Adomnicai"; }; - Gabriel439 = { - email = "Gabriel439@gmail.com"; - github = "Gabriella439"; - githubId = 1313787; - name = "Gabriel Gonzalez"; - }; GabrielDougherty = { email = "contact@gabrieldougherty.com"; github = "GabrielDougherty"; githubId = 10541219; name = "Gabriel Dougherty"; }; + Gabriella439 = { + email = "GenuineGabriella@gmail.com"; + github = "Gabriella439"; + githubId = 1313787; + name = "Gabriella Gonzalez"; + }; gador = { email = "florian.brandes@posteo.de"; github = "gador"; @@ -5861,15 +5897,6 @@ githubId = 1621335; name = "Andrew Trachenko"; }; - gordias = { - name = "Gordias"; - email = "gordias@disroot.org"; - github = "gordiasdot"; - githubId = 94724133; - keys = [{ - fingerprint = "C006 B8A0 0618 F3B6 E0E4 2ECD 5D47 2848 30FA A4FA"; - }]; - }; gotcha = { email = "gotcha@bubblenet.be"; github = "gotcha"; @@ -6370,6 +6397,12 @@ fingerprint = "45A9 9917 578C D629 9F5F B5B4 C22D 4DE4 D7B3 2D19"; }]; }; + hitsmaxft = { + name = "Bhe Hongtyu"; + email = "mfthits@gmail.com"; + github = "hitsmaxft"; + githubId = 352727; + }; hjones2199 = { email = "hjones2199@gmail.com"; github = "hjones2199"; @@ -6403,6 +6436,15 @@ githubId = 6074754; name = "Hlodver Sigurdsson"; }; + hmajid2301 = { + name = "Haseeb Majid"; + email = "hello@haseebmajid.dev"; + github = "hmajid2301"; + githubId = 998807; + keys = [{ + fingerprint = "A236 785D 59F1 9076 1E9C E8EC 7828 3DB3 D233 E1F9"; + }]; + }; hmenke = { name = "Henri Menke"; email = "henri@henrimenke.de"; @@ -6729,7 +6771,7 @@ }; ilya-kolpakov = { email = "ilya.kolpakov@gmail.com"; - github = "ilya-kolpakov"; + github = "1pakch"; githubId = 592849; name = "Ilya Kolpakov"; }; @@ -6886,6 +6928,12 @@ githubId = 137306; name = "Michele Catalano"; }; + isaozler = { + email = "isaozler@gmail.com"; + github = "isaozler"; + githubId = 1378630; + name = "Isa Ozler"; + }; isgy = { name = "isgy"; email = "isgy@teiyg.com"; @@ -7125,7 +7173,7 @@ jayesh-bhoot = { name = "Jayesh Bhoot"; email = "jb@jayeshbhoot.com"; - github = "jayeshbhoot"; + github = "bhootjb"; githubId = 1915507; }; jayman2000 = { @@ -7610,10 +7658,10 @@ name = "Jocelyn Thode"; }; joedevivo = { - github = "joedevivo"; - githubId = 55951; - name = "Joe DeVivo"; - }; + github = "joedevivo"; + githubId = 55951; + name = "Joe DeVivo"; + }; joelancaster = { email = "joe.a.lancas@gmail.com"; github = "JoeLancaster"; @@ -7943,7 +7991,7 @@ }; juaningan = { email = "juaningan@gmail.com"; - github = "uningan"; + github = "oneingan"; githubId = 810075; name = "Juan Rodal"; }; @@ -8906,7 +8954,7 @@ github = "leifhelm"; githubId = 31693262; name = "Jakob Leifhelm"; - keys =[{ + keys = [{ fingerprint = "4A82 F68D AC07 9FFD 8BF0 89C4 6817 AA02 3810 0822"; }]; }; @@ -9963,7 +10011,7 @@ githubId = 95194; name = "Mauricio Scheffer"; }; - maxbrunet = { + maxbrunet = { email = "max@brnt.mx"; github = "maxbrunet"; githubId = 32458727; @@ -10335,7 +10383,7 @@ name = "Michael Pacheco"; github = "MichaelPachec0"; githubId = 48970112; - keys = [ { + keys = [{ fingerprint = "8D12 991F 5558 C501 70B2 779C 7811 46B0 B5F9 5F64"; }]; }; @@ -10647,6 +10695,12 @@ githubId = 708570; name = "Manuel Mendez"; }; + mmusnjak = { + email = "marko.musnjak@gmail.com"; + github = "mmusnjak"; + githubId = 668956; + name = "Marko Mušnjak"; + }; mnacamura = { email = "m.nacamura@gmail.com"; github = "mnacamura"; @@ -11410,6 +11464,12 @@ fingerprint = "E576 BFB2 CF6E B13D F571 33B9 E315 A758 4613 1564"; }]; }; + nielsegberts = { + email = "nix@nielsegberts.nl"; + github = "nielsegberts"; + githubId = 368712; + name = "Niels Egberts"; + }; nigelgbanks = { name = "Nigel Banks"; email = "nigel.g.banks@gmail.com"; @@ -11452,6 +11512,16 @@ githubId = 26231126; name = "Nils ANDRÉ-CHANG"; }; + nim65s = { + email = "guilhem.saurel@laas.fr"; + matrix = "@gsaurel:laas.fr"; + github = "nim65s"; + githubId = 131929; + name = "Guilhem Saurel"; + keys = [{ + fingerprint = "9B1A 7906 5D2F 2B80 6C8A 5A1C 7D2A CDAF 4653 CF28"; + }]; + }; ninjatrappeur = { email = "felix@alternativebit.fr"; matrix = "@ninjatrappeur:matrix.org"; @@ -11752,6 +11822,12 @@ githubId = 30825096; name = "Ning Zhang"; }; + oaksoaj = { + email = "oaksoaj@riseup.net"; + name = "Oaksoaj"; + github = "oaksoaj"; + githubId = 103952141; + }; obadz = { email = "obadz-nixos@obadz.com"; github = "obadz"; @@ -11910,6 +11986,15 @@ github = "ony"; githubId = 11265; }; + ooliver1 = { + name = "Oliver Wilkes"; + email = "oliverwilkes2006@icloud.com"; + github = "ooliver1"; + githubId = 34910574; + keys = [{ + fingerprint = "D055 8A23 3947 B7A0 F966 B07F 0B41 0348 9833 7273"; + }]; + }; opeik = { email = "sandro@stikic.com"; github = "opeik"; @@ -15177,6 +15262,12 @@ githubId = 38893265; name = "StrikerLulu"; }; + stteague = { + email = "stteague505@yahoo.com"; + github = "stteague"; + githubId = 77596767; + name = "Scott Teague"; + }; stumoss = { email = "samoss@gmail.com"; github = "stumoss"; @@ -15944,6 +16035,12 @@ github = "TilCreator"; githubId = 18621411; }; + tillkruss = { + name = "Till Krüss"; + email = "till@kruss.io"; + github = "tillkruss"; + githubId = 665029; + }; tilpner = { name = "Till Höppner"; email = "nixpkgs@tilpner.com"; @@ -16042,6 +16139,12 @@ githubId = 3159881; name = "Tobias Markus"; }; + tm-drtina = { + email = "tm.drtina@gmail.com"; + github = "tm-drtina"; + githubId = 26902865; + name = "Tomas Drtina"; + }; tmountain = { email = "tinymountain@gmail.com"; github = "tmountain"; @@ -16921,16 +17024,6 @@ github = "wdavidw"; githubId = 46896; }; - WeebSorceress = { - name = "WeebSorceress"; - email = "hello@weebsorceress.anonaddy.me"; - matrix = "@weebsorceress:matrix.org"; - github = "WeebSorceress"; - githubId = 106774777; - keys = [{ - fingerprint = "659A 9BC3 F904 EC24 1461 2EFE 7F57 3443 17F0 FA43"; - }]; - }; wegank = { name = "Weijia Wang"; email = "contact@weijia.wang"; diff --git a/maintainers/scripts/fix-maintainers.pl b/maintainers/scripts/fix-maintainers.pl index 81f6450c5faf0..a83df9ec0cf0f 100755 --- a/maintainers/scripts/fix-maintainers.pl +++ b/maintainers/scripts/fix-maintainers.pl @@ -42,7 +42,7 @@ while(my($k, $v) = each %$maintainers_json) { } my $resp_json = from_json($resp->content); my $api_user = %$resp_json{"login"}; - if ($current_user ne $api_user) { + if (lc($current_user) ne lc($api_user)) { print $current_user . " is now known on github as " . $api_user . ". Editing maintainer-list.nix…\n"; my $file = path($maintainers_list_nix); my $data = $file->slurp_utf8; diff --git a/maintainers/team-list.nix b/maintainers/team-list.nix index 294b7e51717be..5abb62d85325c 100644 --- a/maintainers/team-list.nix +++ b/maintainers/team-list.nix @@ -213,7 +213,7 @@ with lib.maintainers; { dhall = { members = [ - Gabriel439 + Gabriella439 ehmry ]; scope = "Maintain Dhall and related packages."; @@ -292,6 +292,8 @@ with lib.maintainers; { members = [ imincik sikmir + nh2 + willcohen ]; scope = "Maintain geospatial packages."; shortName = "Geospatial"; @@ -536,7 +538,6 @@ with lib.maintainers; { ma27 fadenb mguentner - ekleog ralith dandellion sumnerevans @@ -556,6 +557,15 @@ with lib.maintainers; { shortName = "Minimal Bootstrap"; }; + mercury = { + members = [ + _9999years + Gabriella439 + ]; + scope = "Group registry for packages maintained by Mercury"; + shortName = "Mercury Employees"; + }; + mobile = { members = [ samueldr diff --git a/nixos/doc/manual/configuration/customizing-packages.section.md b/nixos/doc/manual/configuration/customizing-packages.section.md index bceeeb2d7a16a..709a07b09cead 100644 --- a/nixos/doc/manual/configuration/customizing-packages.section.md +++ b/nixos/doc/manual/configuration/customizing-packages.section.md @@ -12,6 +12,29 @@ Unfortunately, Nixpkgs currently lacks a way to query available configuration options. ::: +::: {.note} +Alternatively, many packages come with extensions one might add. +Examples include: +- [`passExtensions.pass-otp`](https://search.nixos.org/packages/query=passExtensions.pass-otp) +- [`python310Packages.requests`](https://search.nixos.org/packages/query=python310Packages.requests) + +You can use them like this: +```nix +environment.systemPackages = with pkgs; [ + sl + (pass.withExtensions (subpkgs: with subpkgs; [ + pass-audit + pass-otp + pass-genphrase + ])) + (python3.withPackages (subpkgs: with subpkgs; [ + requests + ])) + cowsay +]; +``` +::: + Apart from high-level options, it's possible to tweak a package in almost arbitrary ways, such as changing or disabling dependencies of a package. For instance, the Emacs package in Nixpkgs by default has a diff --git a/nixos/doc/manual/installation/upgrading.chapter.md b/nixos/doc/manual/installation/upgrading.chapter.md index 26b6b8cc23ef1..d39e1b786d835 100644 --- a/nixos/doc/manual/installation/upgrading.chapter.md +++ b/nixos/doc/manual/installation/upgrading.chapter.md @@ -6,7 +6,7 @@ expressions and associated binaries. The NixOS channels are updated automatically from NixOS's Git repository after certain tests have passed and all packages have been built. These channels are: -- *Stable channels*, such as [`nixos-22.11`](https://nixos.org/channels/nixos-22.11). +- *Stable channels*, such as [`nixos-23.05`](https://channels.nixos.org/nixos-23.05). These only get conservative bug fixes and package upgrades. For instance, a channel update may cause the Linux kernel on your system to be upgraded from 4.19.34 to 4.19.38 (a minor bug fix), but not @@ -14,13 +14,13 @@ passed and all packages have been built. These channels are: Stable channels are generally maintained until the next stable branch is created. -- The *unstable channel*, [`nixos-unstable`](https://nixos.org/channels/nixos-unstable). +- The *unstable channel*, [`nixos-unstable`](https://channels.nixos.org/nixos-unstable). This corresponds to NixOS's main development branch, and may thus see radical changes between channel updates. It's not recommended for production systems. -- *Small channels*, such as [`nixos-22.11-small`](https://nixos.org/channels/nixos-22.11-small) - or [`nixos-unstable-small`](https://nixos.org/channels/nixos-unstable-small). +- *Small channels*, such as [`nixos-23.05-small`](https://channels.nixos.org/nixos-23.05-small) + or [`nixos-unstable-small`](https://channels.nixos.org/nixos-unstable-small). These are identical to the stable and unstable channels described above, except that they contain fewer binary packages. This means they get updated faster than the regular channels (for instance, when a critical security patch @@ -28,7 +28,7 @@ passed and all packages have been built. These channels are: built from source than usual. They're mostly intended for server environments and as such contain few GUI applications. -To see what channels are available, go to <https://nixos.org/channels>. +To see what channels are available, go to <https://channels.nixos.org>. (Note that the URIs of the various channels redirect to a directory that contains the channel's latest version and includes ISO images and VirtualBox appliances.) Please note that during the release process, @@ -38,38 +38,38 @@ newest supported stable release. When you first install NixOS, you're automatically subscribed to the NixOS channel that corresponds to your installation source. For -instance, if you installed from a 22.11 ISO, you will be subscribed to -the `nixos-22.11` channel. To see which NixOS channel you're subscribed +instance, if you installed from a 23.05 ISO, you will be subscribed to +the `nixos-23.05` channel. To see which NixOS channel you're subscribed to, run the following as root: ```ShellSession # nix-channel --list | grep nixos -nixos https://nixos.org/channels/nixos-unstable +nixos https://channels.nixos.org/nixos-unstable ``` To switch to a different NixOS channel, do ```ShellSession -# nix-channel --add https://nixos.org/channels/channel-name nixos +# nix-channel --add https://channels.nixos.org/channel-name nixos ``` (Be sure to include the `nixos` parameter at the end.) For instance, to -use the NixOS 22.11 stable channel: +use the NixOS 23.05 stable channel: ```ShellSession -# nix-channel --add https://nixos.org/channels/nixos-22.11 nixos +# nix-channel --add https://channels.nixos.org/nixos-23.05 nixos ``` If you have a server, you may want to use the "small" channel instead: ```ShellSession -# nix-channel --add https://nixos.org/channels/nixos-22.11-small nixos +# nix-channel --add https://channels.nixos.org/nixos-23.05-small nixos ``` And if you want to live on the bleeding edge: ```ShellSession -# nix-channel --add https://nixos.org/channels/nixos-unstable nixos +# nix-channel --add https://channels.nixos.org/nixos-unstable nixos ``` You can then upgrade NixOS to the latest version in your chosen channel @@ -114,5 +114,5 @@ the new generation contains a different kernel, initrd or kernel modules. You can also specify a channel explicitly, e.g. ```nix -system.autoUpgrade.channel = https://nixos.org/channels/nixos-22.11; +system.autoUpgrade.channel = "https://channels.nixos.org/nixos-23.05"; ``` diff --git a/nixos/doc/manual/release-notes/rl-2305.section.md b/nixos/doc/manual/release-notes/rl-2305.section.md index 6bf560c6017aa..259b835a810a9 100644 --- a/nixos/doc/manual/release-notes/rl-2305.section.md +++ b/nixos/doc/manual/release-notes/rl-2305.section.md @@ -1,65 +1,84 @@ -# Release 23.05 (“Stoat”, 2023.05/??) {#sec-release-23.05} +# Release 23.05 (“Stoat”, 2023.05/31) {#sec-release-23.05} -Support is planned until the end of December 2023, handing over to 23.11. +The NixOS release team is happy to announce a new version of NixOS. The release is called NixOS 23.05 ("Stoat"). + +NixOS is a Linux distribution, whose set of packages can also be used on other Linux systems and macOS. + +Support is planned until the end of December 2023, handing over to NixOS 23.11. + +To upgrade to the latest release, follow the [upgrade chapter](https://nixos.org/manual/nixos/stable/index.html#sec-upgrading). ## Highlights {#sec-release-23.05-highlights} -In addition to numerous new and upgraded packages, this release has the following highlights: +In addition to numerous new and updated packages, this release has the following highlights: -<!-- To avoid merge conflicts, consider adding your item at an arbitrary place in the list instead. --> +- The default [Nix](https://github.com/NixOS/nix) version was updated from 2.11 to 2.13. In particular, this includes a [small language alteration](https://github.com/NixOS/nix/issues/8259) in the way floats are represented in `builtins.toJSON`. See the release notes for [2.12](https://nixos.org/manual/nix/stable/release-notes/rl-2.12.html) and [2.13](https://nixos.org/manual/nix/unstable/release-notes/rl-2.13.html) for more information. -- Core version changes: +- The default [Linux Kernel](https://kernel.org/) was updated from version 5.15 to 6.1, see [Kernelnewbies](https://kernelnewbies.org/Linux_6.1) for what has changed. All Kernels currently shown on [kernel.org](https://kernel.org/) are available. - - default linux: 5.15 -\> 6.1, all supported kernels available +- [systemd](https://systemd.io) has been updated from v252 to v253, see [the release notes](https://github.com/systemd/systemd/blob/v253/NEWS#L3-L659) for more information on the changes. + - Updating with `nixos-rebuild boot` and rebooting is recommended, since in some rare cases the `nixos-rebuild switch` into the new generation on a live system might fail due to missing mount units. - - systemd has been updated to v253.1, see [the pull request](https://github.com/NixOS/nixpkgs/pull/216826) for more info. - It's recommended to use `nixos-rebuild boot` and `reboot`, rather than `nixos-rebuild switch` - since in some rare cases - the switch of a live system might fail. +- [glibc](https://www.gnu.org/software/libc/) has been updated from version 2.35 to 2.37, see [the release notes](https://sourceware.org/glibc/wiki/Release/2.37) for what was changed. - - glibc: 2.35 -\> 2.37 +- [libxcrypt](https://github.com/besser82/libxcrypt), the library providing the `crypt(3)` password hashing function, is now built without support for algorithms not flagged [`strong`](https://github.com/besser82/libxcrypt/blob/v4.4.33/lib/hashes.conf#L48). This affects the availability of password hashing algorithms used for system login (`login(1)`, `passwd(1)`), but also Apache2 Basic-Auth, Samba, OpenLDAP, Dovecot, and [many other packages](https://sourcegraph.com/search?q=context:global+repo:%5Egithub%5C.com/NixOS/nixpkgs%24+libxcrypt&patternType=standard&sm=1&groupBy=path). -- Cinnamon has been updated to 5.6, see [the pull request](https://github.com/NixOS/nixpkgs/pull/201328#issue-1449910204) for what is changed. +- NixOS now defaults to using [nsncd](https://github.com/twosigma/nsncd), a non-caching reimplementation of nscd in Rust, as its NSS lookup dispatcher. This replaces the buggy and deprecated nscd implementation provided through glibc. When you find problems, you can switch back by disabling it: + ```nix + services.nscd.enableNsncd = false; + ``` -- GNOME has been upgraded to version 44. Please see the [release notes](https://release.gnome.org/44/) for details. +- The internal option `boot.bootspec.enable` is now enabled by default because [RFC 0125](https://github.com/NixOS/rfcs/pull/125) was merged. This means you will have a bootspec document called `boot.json` generated for each system and specialisation in the top-level. This is useful to enable advanced boot use cases in NixOS, such as Secure Boot. -- KDE Plasma has been updated to v5.27, see [the release notes](https://kde.org/announcements/plasma/5/5.27.0/) for what is changed. +- Two changes to `nixos-rebuild` are important to highlight as well. + - Support for an extra `--specialisation` option was added that can be used to change specialisation for `switch` and `test` commands. + - The `--target-host` and `--build-host` options no longer treat the `localhost` value specially – to build on resp. deploy to a local machine, omit the relevant flag. -- Python implements [PEP 668](https://peps.python.org/pep-0668/), providing better feedback to users that try to run `pip install` system-wide. +- [Python](https://www.python.org) implements [PEP 668](https://peps.python.org/pep-0668/), providing better feedback to users that try to run `pip install` for system-wide or user home installations. -- `nixos-rebuild` now supports an extra `--specialisation` option that can be used to change specialisation for `switch` and `test` commands. +- [Cinnamon](https://github.com/linuxmint/Cinnamon) has been updated to version 5.6, see [the pull request](https://github.com/NixOS/nixpkgs/pull/201328#issue-1449910204) for what was changed. -- `libxcrypt`, the library providing the `crypt(3)` password hashing function, is now built without support for algorithms not flagged [`strong`](https://github.com/besser82/libxcrypt/blob/v4.4.33/lib/hashes.conf#L48). This affects the availability of password hashing algorithms used for system login (`login(1)`, `passwd(1)`), but also Apache2 Basic-Auth, Samba, OpenLDAP, Dovecot, and [many other packages](https://github.com/search?q=repo%3ANixOS%2Fnixpkgs%20libxcrypt&type=code). +- [GNOME](https://www.gnome.org) has been updated to version 44, see the [the release notes](https://release.gnome.org/44/) for details. -- `boot.bootspec.enable` (internal option) is now enabled by default because [RFC-0125](https://github.com/NixOS/rfcs/pull/125) was merged. This means you will have a bootspec document called `boot.json` generated for each system and specialisation in the top-level. This is useful to enable advanced boot usecases in NixOS such as SecureBoot. +- [KDE Plasma](https://kde.org/de/plasma-desktop/) has been updated to version 5.27, see [the release notes](https://kde.org/announcements/plasma/5/5.27.0/) for what was changed. -## New Services {#sec-release-23.05-new-services} +- `openra` was updated to `20230225`. Due to large scope of the update, currently only `openraPackages.engines.release` and `openraPackages.engines.latest` packages are available. + If you want to use the old engine versions or mods, they were moved to the `openraPackages_2019` namespace. -<!-- To avoid merge conflicts, consider adding your item at an arbitrary place in the list instead. --> +## New Services {#sec-release-23.05-new-services} - [Akkoma](https://akkoma.social), an ActivityPub microblogging server. Available as [services.akkoma](options.html#opt-services.akkoma.enable). -- [Pixelfed](https://pixelfed.org/), an Instagram-like ActivityPub server. Available as [services.pixelfed](options.html#opt-services.pixelfed.enable). +- [alertmanager-irc-relay](https://github.com/google/alertmanager-irc-relay), a Prometheus Alertmanager IRC Relay. Available as [services.prometheus.alertmanagerIrcRelay](options.html#opt-services.prometheus.alertmanagerIrcRelay.enable). -- [blesh](https://github.com/akinomyoga/ble.sh), a line editor written in pure bash. Available as [programs.bash.blesh](#opt-programs.bash.blesh.enable). +- [alice-lg](github.com/alice-lg/alice-lg), a looking-glass for BGP sessions. Available as [services.alice-lg](#opt-services.alice-lg.enable). -- [webhook](https://github.com/adnanh/webhook), a lightweight webhook server. Available as [services.webhook](#opt-services.webhook.enable). +- [atuin](https://github.com/ellie/atuin), a sync server for shell history. Available as [services.atuin](#opt-services.atuin.enable). + +- [authelia](https://www.authelia.com/), an open-source authentication and authorization server. Available as [services.authelia](options.html#opt-services.authelia.enable). + +- [birdwatcher](github.com/alice-lg/birdwatcher), a small HTTP server meant to provide an API defined by Barry O'Donovan's birds-eye to the BIRD internet routing daemon. Available as [services.birdwatcher](#opt-services.birdwatcher.enable). + +- [blesh](https://github.com/akinomyoga/ble.sh), a line editor written in pure bash. Available as [programs.bash.blesh](#opt-programs.bash.blesh.enable). -- [cups-pdf-to-pdf](https://github.com/alexivkin/CUPS-PDF-to-PDF), a pdf-generating cups backend based on [cups-pdf](https://www.cups-pdf.de/). Available as [services.printing.cups-pdf](#opt-services.printing.cups-pdf.enable). +- [Budgie Desktop](https://github.com/BuddiesOfBudgie/budgie-desktop), a familiar, modern desktop environment. Available as [services.xserver.desktopManager.budgie](options.html#opt-services.xserver.desktopManager.budgie). -- [clash-verge](https://github.com/zzzgydi/clash-verge), A Clash GUI based on tauri. Available as [programs.clash-verge](#opt-programs.clash-verge.enable). +- [clash-verge](https://github.com/zzzgydi/clash-verge), a Clash GUI based on tauri. Available as [programs.clash-verge](#opt-programs.clash-verge.enable). - [Cloudlog](https://www.magicbug.co.uk/cloudlog/), a web-based Amateur Radio logging application. Available as [services.cloudlog](#opt-services.cloudlog.enable). +- [consul-template](https://github.com/hashicorp/consul-template/), a template renderer, notifier, and supervisor for HashiCorp Consul and Vault data. Available as [services.consul-template](#opt-services.consul-template.instances). + +- [cups-pdf-to-pdf](https://github.com/alexivkin/CUPS-PDF-to-PDF), a PDF-generating CUPS backend based on [cups-pdf](https://www.cups-pdf.de/). Available as [services.printing.cups-pdf](#opt-services.printing.cups-pdf.enable). + - [Deepin Desktop Environment](https://github.com/linuxdeepin/dde), an elegant, easy to use and reliable desktop environment. Available as [services.xserver.desktopManager.deepin](options.html#opt-services.xserver.desktopManager.deepin). -- [system-repart](https://www.freedesktop.org/software/systemd/man/systemd-repart.service.html), grow and add partitions to a partition table. Available as [systemd.repart](options.html#opt-systemd.repart) and [boot.initrd.systemd.repart](options.html#opt-boot.initrd.systemd.repart) +- [esphome](https://esphome.io), a dashboard to configure ESP8266/ESP32 devices for use with Home Automation systems. Available as [services.esphome](#opt-services.esphome.enable). - [frigate](https://frigate.video), an open source NVR built around real-time AI object detection. Available as [services.frigate](#opt-services.frigate.enable). - [fzf](https://github.com/junegunn/fzf), a command line fuzzyfinder. Available as [programs.fzf](#opt-programs.fzf.fuzzyCompletion). -- [readarr](https://github.com/Readarr/Readarr), Book Manager and Automation (Sonarr for Ebooks). Available as [services.readarr](options.html#opt-services.readarr.enable). - - [gemstash](https://github.com/rubygems/gemstash), a RubyGems.org cache and private gem server. Available as [services.gemstash](#opt-services.gemstash.enable). - [gitea-actions-runner](https://gitea.com/gitea/act_runner), a CI runner for Gitea/Forgejo Actions. Available as [services.gitea-actions-runner](#opt-services.gitea-actions-runner.instances). @@ -68,131 +87,121 @@ In addition to numerous new and upgraded packages, this release has the followin - [go2rtc](https://github.com/AlexxIT/go2rtc), a camera streaming appliation with support for RTSP, WebRTC, HomeKit, FFMPEG, RTMP and other protocols. Available as [services.go2rtc](options.html#opt-services.go2rtc.enable). -- [harmonia](https://github.com/nix-community/harmonia/), Nix binary cache implemented in rust using libnix-store. Available as [services.harmonia](options.html#opt-services.harmonia.enable). +- [goeland](https://github.com/slurdge/goeland), an alternative to rss2email written in Golang with many filters. Available as [services.goeland](#opt-services.goeland.enable). -- [hyprland](https://github.com/hyprwm/hyprland), a dynamic tiling Wayland compositor that doesn't sacrifice on its looks. Available as [programs.hyprland](#opt-programs.hyprland.enable). +- [gonic](https://github.com/sentriz/gonic), a Subsonic music streaming server. Available as [services.gonic](#opt-services.gonic.enable). -- [minipro](https://gitlab.com/DavidGriffith/minipro/), an open source program for controlling the MiniPRO TL866xx series of chip programmers. Available as [programs.minipro](options.html#opt-programs.minipro.enable). +- [hardware.ipu6](#opt-hardware.ipu6.enable), drivers for IPU6 based webcams on Intel Tiger Lake and Alder Lake. -- [stevenblack-blocklist](https://github.com/StevenBlack/hosts), A unified hosts file with base extensions for blocking unwanted websites. Available as [networking.stevenblack](options.html#opt-networking.stevenblack.enable). +- [harmonia](https://github.com/nix-community/harmonia/), a Nix binary cache implemented in Rust using [libnixstore](https://docs.rs/libnixstore/latest/libnixstore/). Available as [services.harmonia](options.html#opt-services.harmonia.enable). -- [Budgie Desktop](https://github.com/BuddiesOfBudgie/budgie-desktop), a familiar, modern desktop environment. Available as [services.xserver.desktopManager.budgie](options.html#opt-services.xserver.desktopManager.budgie). +- [hyprland](https://github.com/hyprwm/hyprland), a dynamic tiling Wayland compositor that doesn't sacrifice on its looks. Available as [programs.hyprland](#opt-programs.hyprland.enable). - [imaginary](https://github.com/h2non/imaginary), a microservice for high-level image processing that Nextcloud can use to generate previews. Available as [services.imaginary](#opt-services.imaginary.enable). -- [opensearch](https://opensearch.org), a search server alternative to Elasticsearch. Available as [services.opensearch](options.html#opt-services.opensearch.enable). - -- [kavita](https://kavitareader.com), a self-hosted digital library. Available as [services.kavita](options.html#opt-services.kavita.enable). +- [ivpn](https://www.ivpn.net/), a secure, private VPN with fast WireGuard connections. Available as [services.ivpn](#opt-services.ivpn.enable). -- [monica](https://www.monicahq.com), an open source personal CRM. Available as [services.monica](options.html#opt-services.monica.enable). +- [vmalert](https://victoriametrics.com/), an alerting engine for VictoriaMetrics. Available as [services.vmalert](#opt-services.vmalert.enable). -- [authelia](https://www.authelia.com/), is an open-source authentication and authorization server. Available under [services.authelia](options.html#opt-services.authelia.enable). +- [jellyseerr](https://github.com/Fallenbagel/jellyseerr), a web-based requests manager for Jellyfin, forked from Overseerr. Available as [services.jellyseerr](#opt-services.jellyseerr.enable). -- [goeland](https://github.com/slurdge/goeland), an alternative to rss2email written in golang with many filters. Available as [services.goeland](#opt-services.goeland.enable). +- [kavita](https://kavitareader.com), a self-hosted digital library. Available as [services.kavita](options.html#opt-services.kavita.enable). -- [alertmanager-irc-relay](https://github.com/google/alertmanager-irc-relay), a Prometheus Alertmanager IRC Relay. Available as [services.prometheus.alertmanagerIrcRelay](options.html#opt-services.prometheus.alertmanagerIrcRelay.enable). +- [keyd](https://github.com/rvaiya/keyd), a key remapping daemon for Linux. Available as [services.keyd](#opt-services.keyd.enable). -- [tts](https://github.com/coqui-ai/TTS), a battle-tested deep learning toolkit for Text-to-Speech. Multiple servers may be configured below [services.tts.servers](#opt-services.tts.servers). +- [lldap](https://github.com/lldap/lldap), a lightweight authentication server that provides an opinionated, simplified LDAP interface for authentication. Available as [services.lldap](#opt-services.lldap.enable). -- [atuin](https://github.com/ellie/atuin), a sync server for shell history. Available as [services.atuin](#opt-services.atuin.enable). +- [minipro](https://gitlab.com/DavidGriffith/minipro/), an open source program for controlling the MiniPRO TL866xx series of chip programmers. Available as [programs.minipro](options.html#opt-programs.minipro.enable). -- [SFTPGo](https://github.com/drakkan/sftpgo), a fully featured and highly configurable SFTP server with optional HTTP/S, FTP/S and WebDAV support. Available as [services.sftpgo](options.html#opt-services.sftpgo.enable). +- [mmsd](https://gitlab.com/kop316/mmsd), a lower level daemon that transmits and receives MMSes. Available as [services.mmsd](#opt-services.mmsd.enable). -- [esphome](https://esphome.io), a dashboard to configure ESP8266/ESP32 devices for use with Home Automation systems. Available as [services.esphome](#opt-services.esphome.enable). +- [monica](https://www.monicahq.com), an open source personal CRM. Available as [services.monica](options.html#opt-services.monica.enable). - [networkd-dispatcher](https://gitlab.com/craftyguy/networkd-dispatcher), a dispatcher service for systemd-networkd connection status changes. Available as [services.networkd-dispatcher](#opt-services.networkd-dispatcher.enable). -- [gonic](https://github.com/sentriz/gonic), a Subsonic music streaming server. Available as [services.gonic](#opt-services.gonic.enable). - -- [mmsd](https://gitlab.com/kop316/mmsd), a lower level daemon that transmits and receives MMSes. Available as [services.mmsd](#opt-services.mmsd.enable). +- [nimdow](https://github.com/avahe-kellenberger/nimdow), a window manager written in Nim, inspired by dwm. Available as [services.xserver.windowManager.nimdow.enable](options.html#opt-services.xserver.windowManager.nimdow.enable). -- [QDMR](https://dm3mat.darc.de/qdmr/), a GUI application and command line tool for programming DMR radios [programs.qdmr](#opt-programs.qdmr.enable) +- [opensearch](https://opensearch.org), a search server alternative to Elasticsearch. Available as [services.opensearch](options.html#opt-services.opensearch.enable). -- [keyd](https://github.com/rvaiya/keyd), a key remapping daemon for linux. Available as [services.keyd](#opt-services.keyd.enable). +- [openvscode-server](https://github.com/gitpod-io/openvscode-server), run VS Code on a remote machine with access through a modern web browser from any device, anywhere. Available as [services.openvscode-server](#opt-services.openvscode-server.enable). -- [consul-template](https://github.com/hashicorp/consul-template/), a template rendering, notifier, and supervisor for HashiCorp Consul and Vault data. Available as [services.consul-template](#opt-services.consul-template.instances). +- [peroxide](https://github.com/ljanyst/peroxide), a fork of the official [ProtonMail bridge](https://github.com/ProtonMail/proton-bridge) that aims to be similar to [Hydroxide](https://github.com/emersion/hydroxide). Available as [services.peroxide](#opt-services.peroxide.enable). -- [vault-agent](https://developer.hashicorp.com/vault/docs/agent), a template rendering and API auth proxy for HashiCorp Vault, similar to `consul-template`. Available as [services.vault-agent](#opt-services.vault-agent.instances). +- [photoprism](https://photoprism.app/), a AI-powered photos app for the decentralized web. Available as [services.photoprism](options.html#opt-services.photoprism.enable). -- [trippy](https://github.com/fujiapple852/trippy), a network diagnostic tool. Available as [programs.trippy](#opt-programs.trippy.enable). +- [Pixelfed](https://pixelfed.org/), an Instagram-like ActivityPub server. Available as [services.pixelfed](options.html#opt-services.pixelfed.enable). -- [v2rayA](https://v2raya.org), a Linux web GUI client of Project V which supports V2Ray, Xray, SS, SSR, Trojan and Pingtunnel. Available as [services.v2raya](options.html#opt-services.v2raya.enable). +- [PufferPanel](https://pufferpanel.com), a game server management panel designed to be easy to use. Available as [services.pufferpanel](#opt-services.pufferpanel.enable). -- [rshim](https://github.com/Mellanox/rshim-user-space), the user-space rshim driver for the BlueField SoC. Available as [services.rshim](options.html#opt-services.rshim.enable). +- [QDMR](https://dm3mat.darc.de/qdmr/), a GUI application and command line tool for programming DMR radios [programs.qdmr](#opt-programs.qdmr.enable). -- [wstunnel](https://github.com/erebe/wstunnel), a proxy tunnelling arbitrary TCP or UDP traffic through a WebSocket connection. Instances may be configured via [services.wstunnel](options.html#opt-services.wstunnel.enable). +- [readarr](https://github.com/Readarr/Readarr), book manager and automation (Sonarr for ebooks). Available as [services.readarr](options.html#opt-services.readarr.enable). -- [ulogd](https://www.netfilter.org/projects/ulogd/index.html), a userspace logging daemon for netfilter/iptables related logging. Available as [services.ulogd](options.html#opt-services.ulogd.enable). +- [ReGreet](https://github.com/rharish101/ReGreet), a clean and customizable greeter for greetd. Available as [programs.regreet](#opt-programs.regreet.enable). -- [PufferPanel](https://pufferpanel.com), game server management panel designed to be easy to use. Available as [services.pufferpanel](#opt-services.pufferpanel.enable). +- [rshim](https://github.com/Mellanox/rshim-user-space), the user-space rshim driver for the BlueField SoC. Available as [services.rshim](options.html#opt-services.rshim.enable). -- [jellyseerr](https://github.com/Fallenbagel/jellyseerr), a web-based requests manager for Jellyfin, forked from Overseerr. Available as [services.jellyseerr](#opt-services.jellyseerr.enable). +- [SFTPGo](https://github.com/drakkan/sftpgo), a fully featured and highly configurable SFTP server with optional HTTP/S, FTP/S and WebDAV support. Available as [services.sftpgo](options.html#opt-services.sftpgo.enable). -- [stargazer](https://sr.ht/~zethra/stargazer/), a fast and easy to use Gemini server. Available as [services.stargazer](#opt-services.stargazer.enable). +- [sharing](https://github.com/parvardegr/sharing), a command-line tool to share directories and files from the CLI to iOS and Android devices without the need of an extra client app. Available as [programs.sharing](#opt-programs.sharing.enable). - [sniffnet](https://github.com/GyulyVGC/sniffnet), an application to monitor your network traffic. Available as [programs.sniffnet](#opt-programs.sniffnet.enable). -- [photoprism](https://photoprism.app/), a AI-Powered Photos App for the Decentralized Web. Available as [services.photoprism](options.html#opt-services.photoprism.enable). - -- [alice-lg](github.com/alice-lg/alice-lg), a looking-glass for BGP sessions. Available as [services.alice-lg](#opt-services.alice-lg.enable). - -- [birdwatcher](github.com/alice-lg/birdwatcher), a small HTTP server meant to provide an API defined by Barry O'Donovan's birds-eye to the BIRD internet routing daemon. Available as [services.birdwatcher](#opt-services.birdwatcher.enable). - -- [peroxide](https://github.com/ljanyst/peroxide), a fork of the official [ProtonMail bridge](https://github.com/ProtonMail/proton-bridge) that aims to be similar to [Hydroxide](https://github.com/emersion/hydroxide). Available as [services.peroxide](#opt-services.peroxide.enable). - -- [autosuspend](https://github.com/languitar/autosuspend), a python daemon that suspends a system if certain conditions are met, or not met. - -- [sharing](https://github.com/parvardegr/sharing), a command-line tool to share directories and files from the CLI to iOS and Android devices without the need of an extra client app. Available as [programs.sharing](#opt-programs.sharing.enable). +- [stargazer](https://sr.ht/~zethra/stargazer/), a fast and easy to use Gemini server. Available as [services.stargazer](#opt-services.stargazer.enable). -- [nimdow](https://github.com/avahe-kellenberger/nimdow), a window manager written in Nim, inspired by dwm. +- [stevenblack-blocklist](https://github.com/StevenBlack/hosts), a unified hosts file with base extensions for blocking unwanted websites. Available as [networking.stevenblack](options.html#opt-networking.stevenblack.enable). -- [trurl](https://github.com/curl/trurl), a command line tool for URL parsing and manipulation. +- [systemd-repart](https://www.freedesktop.org/software/systemd/man/systemd-repart.service.html), grow and add partitions to a partition table. Available as [systemd.repart](options.html#opt-systemd.repart) and [boot.initrd.systemd.repart](options.html#opt-boot.initrd.systemd.repart) -- [wgautomesh](https://git.deuxfleurs.fr/Deuxfleurs/wgautomesh), a simple utility to help connect wireguard nodes together in a full mesh topology. Available as [services.wgautomesh](options.html#opt-services.wgautomesh.enable). - -- [woodpecker-agents](https://woodpecker-ci.org/), a simple CI engine with great extensibility. Available as [services.woodpecker-agents](#opt-services.woodpecker-agents.agents._name_.enable). +- [trippy](https://github.com/fujiapple852/trippy), a network diagnostic tool. Available as [programs.trippy](#opt-programs.trippy.enable). -- [woodpecker-server](https://woodpecker-ci.org/), a simple CI engine with great extensibility. Available as [services.woodpecker-server](#opt-services.woodpecker-server.enable). +- [tts](https://github.com/coqui-ai/TTS), a battle-tested deep learning toolkit for Text-to-Speech. Multiple servers may be configured below [services.tts.servers](#opt-services.tts.servers). -- [lldap](https://github.com/lldap/lldap), a lightweight authentication server that provides an opinionated, simplified LDAP interface for authentication. Available as [services.lldap](#opt-services.lldap.enable). +- [ulogd](https://www.netfilter.org/projects/ulogd/index.html), a userspace logging daemon for netfilter/iptables related logging. Available as [services.ulogd](options.html#opt-services.ulogd.enable). -- [ReGreet](https://github.com/rharish101/ReGreet), a clean and customizable greeter for greetd. Available as [programs.regreet](#opt-programs.regreet.enable). +- [v2rayA](https://v2raya.org), a Linux web GUI client of Project V which supports V2Ray, Xray, SS, SSR, Trojan and Pingtunnel. Available as [services.v2raya](options.html#opt-services.v2raya.enable). - [v4l2-relayd](https://git.launchpad.net/v4l2-relayd), a streaming relay for v4l2loopback using gstreamer. Available as [services.v4l2-relayd](#opt-services.v4l2-relayd.instances._name_.enable). -- [hardware.ipu6](#opt-hardware.ipu6.enable) adds support for ipu6 based webcams on intel tiger lake and alder lake. +- [vault-agent](https://developer.hashicorp.com/vault/docs/agent), a template renderer and API auth proxy for HashiCorp Vault, similar to `consul-template`. Available as [services.vault-agent](#opt-services.vault-agent.instances). -- [ivpn](https://www.ivpn.net/), a secure, private VPN with fast WireGuard connections. Available as [services.ivpn](#opt-services.ivpn.enable). +- [webhook](https://github.com/adnanh/webhook), a lightweight webhook server. Available as [services.webhook](#opt-services.webhook.enable). -- [openvscode-server](https://github.com/gitpod-io/openvscode-server), run VS Code on a remote machine with access through a modern web browser from any device, anywhere. Available as [services.openvscode-server](#opt-services.openvscode-server.enable). +- [wgautomesh](https://git.deuxfleurs.fr/Deuxfleurs/wgautomesh), a simple utility to help connect wireguard nodes together in a full mesh topology. Available as [services.wgautomesh](options.html#opt-services.wgautomesh.enable). -## Backward Incompatibilities {#sec-release-23.05-incompatibilities} +- [woodpecker](https://woodpecker-ci.org/), a simple CI engine with great extensibility. Available as [services.woodpecker-server](#opt-services.woodpecker-server.enable) and [services.woodpecker-agents](#opt-services.woodpecker-agents.agents._name_.enable). -<!-- To avoid merge conflicts, consider adding your item at an arbitrary place in the list instead. --> +- [wstunnel](https://github.com/erebe/wstunnel), a proxy tunnelling arbitrary TCP or UDP traffic through a WebSocket connection. Available as [services.wstunnel](options.html#opt-services.wstunnel.enable). -- `carnix` and `cratesIO` has been removed due to being unmaintained, use alternatives such as [naersk](https://github.com/nix-community/naersk) and [crate2nix](https://github.com/kolloch/crate2nix) instead. +## Backward Incompatibilities {#sec-release-23.05-incompatibilities} - `services.asusd` configuration now uses strings instead of structured configuration, as upstream switched to the [RON](https://github.com/ron-rs/ron) configuration format. Support for structured configuration may return when [RON](https://github.com/ron-rs/ron) generation is implemented in nixpkgs. -- `checkInputs` have been renamed to `nativeCheckInputs`, because they behave the same as `nativeBuildInputs` when `doCheck` is set. `checkInputs` now denote a new type of dependencies, added to `buildInputs` when `doCheck` is set. As a rule of thumb, `nativeCheckInputs` are tools on `$PATH` used during the tests, and `checkInputs` are libraries which are linked to executables built as part of the tests. Similarly, `installCheckInputs` are renamed to `nativeInstallCheckInputs`, corresponding to `nativeBuildInputs`, and `installCheckInputs` are a new type of dependencies added to `buildInputs` when `doInstallCheck` is set. (Note that this change will not cause breakage to derivations with `strictDeps` unset, which are most packages except python, rust, ocaml and go packages). - -- `buildDunePackage` now defaults to `strictDeps = true` which means that any library should go into `buildInputs` or `checkInputs`. Any executable that is run on the building machine should go into `nativeBuildInputs` or `nativeCheckInputs` respectively. Example of executables are `ocaml`, `findlib` and `menhir`. PPXs are libraries which are built by dune and should therefore not go into `nativeBuildInputs`. - - `borgbackup` module now has an option for inhibiting system sleep while backups are running, defaulting to off (not inhibiting sleep), available as [`services.borgbackup.jobs.<name>.inhibitsSleep`](#opt-services.borgbackup.jobs._name_.inhibitsSleep). -- The `ssh` client tool now disables the `~C` escape sequence by default. This can be re-enabled by setting `EnableEscapeCommandline yes` +- The `openssh` client now comes with the `~C` escape sequence disabled by default. It can be re-enabled by setting `EnableEscapeCommandline yes` + +- The `programs.ssh` client module does not read `/etc/ssh/ssh_known_hosts2` anymore, since this location is [deprecated since 2001](https://marc.info/?l=openssh-unix-dev&m=100508718416162&w=2). -- Many `services.syncthing` options have been moved to `services.syncthing.settings`, as part of [RFC 42](https://github.com/NixOS/rfcs/pull/42)'s implementation, see [#226088](https://github.com/NixOS/nixpkgs/pull/226088). +- The `services.openssh` server module does not read `~/.ssh/authorized_keys2` anymore, since this location is [deprecated since 2001](https://marc.info/?l=openssh-unix-dev&m=100508718416162&w=2). -- The `ssh` module does not read `/etc/ssh/ssh_known_hosts2` anymore since this location is [deprecated since 2001](https://marc.info/?l=openssh-unix-dev&m=100508718416162&w=2). +- MAC-then-encrypt algorithms were removed from the default selection of `services.openssh.settings.Macs`. If you still require these [MACs](https://en.wikipedia.org/wiki/Message_authentication_code), for example when you are relying on libssh2 (e.g. VLC) or the SSH library shipped on the iPhone, you can re-add them like this: -- The openssh module does not read `~/.ssh/authorized_keys2` anymore since this location is [deprecated since 2001](https://marc.info/?l=openssh-unix-dev&m=100508718416162&w=2). + ```nix + services.openssh.settings.Macs = [ + "hmac-sha2-512" + "hmac-sha2-256" + "umac-128@openssh.com" + }; + ``` - `podman` now uses the `netavark` network stack. Users will need to delete all of their local containers, images, volumes, etc, by running `podman system reset --force` once before upgrading their systems. - `git-bug` has been updated to at least version 0.8.0, which includes backwards incompatible changes. The `git-bug-migration` package can be used to upgrade existing repositories. -- `graylog` has been updated to version 5, which can not be upgraded directly from the previously packaged version 3.3. If you had installed the previously packaged version 3.3, please follow the [upgrade path](https://go2docs.graylog.org/5-0/upgrading_graylog/upgrade_path.htm) from 3.3 to 4.0 to 4.3 to 5.0. +- `graylog` has been updated to version 5, which can not be updated directly from the previously packaged version 3.3. If you had installed the previously packaged version 3.3, please follow the [upgrade path](https://go2docs.graylog.org/5-0/upgrading_graylog/upgrade_path.htm) from 3.3 to 4.0 to 4.3 to 5.0. + +- `buildFHSUserEnv` is now called `buildFHSEnv` and uses FlatPak's Bubblewrap sandboxing tool rather than Nixpkgs' own chrootenv. The old chrootenv-based implemenation is still available via `buildFHSEnvChrootenv` but is considered deprecated and will be removed when the remaining uses inside Nixpkgs have been migrated. If your FHSEnv-wrapped application misbehaves when using the new bubblewrap implementation, please create an issue in Nixpkgs. - `nushell` has been updated to at least version 0.77.0, which includes potential breaking changes in aliases. The old aliases are now available as `old-alias` but it is recommended you migrate to the new format. See [Reworked aliases](https://www.nushell.sh/blog/2023-03-14-nushell_0_77.html#reworked-aliases-breaking-changes-kubouch). @@ -200,16 +209,16 @@ In addition to numerous new and upgraded packages, this release has the followin - `keepassx` and `keepassx2` have been removed, due to upstream [stopping development](https://www.keepassx.org/index.html%3Fp=636.html). Consider [KeePassXC](https://keepassxc.org) as a maintained alternative. -- The [services.kubo.settings](#opt-services.kubo.settings) option is now no longer stateful. If you changed any of the options in [services.kubo.settings](#opt-services.kubo.settings) in the past and then removed them from your NixOS configuration again, those changes are still in your Kubo configuration file but will now be reset to the default. If you're unsure, you may want to make a backup of your configuration file (probably /var/lib/ipfs/config) and compare after the update. +- The [services.kubo.settings](#opt-services.kubo.settings) option is now no longer stateful. If you changed any of the options in [services.kubo.settings](#opt-services.kubo.settings) in the past and then removed them from your NixOS configuration again, those changes are still in your Kubo configuration file but will now be reset to the default. If you're unsure, you may want to make a backup of your configuration file (probably `/var/lib/ipfs/config`) and compare after the update. - The Kubo HTTP API will no longer listen on localhost and will instead only listen on a Unix domain socket by default. Read the [services.kubo.settings.Addresses.API](#opt-services.kubo.settings.Addresses.API) option description for more information. - The EC2 image module no longer fetches instance metadata in stage-1. This results in a significantly smaller initramfs, since network drivers no longer need to be included, and faster boots, since metadata fetching can happen in parallel with startup of other services. This breaks services which rely on metadata being present by the time stage-2 is entered. Anything which reads EC2 metadata from `/etc/ec2-metadata` should now have an `after` dependency on `fetch-ec2-metadata.service` -- The mailman service now defaults to using a randomly generated REST API password instead of a hardcoded one. +- The mailman service now defaults to using a randomly generated REST API password instead of a hard-coded one. -- `minio` removed support for its legacy filesystem backend in [RELEASE.2022-10-29T06-21-33Z](https://github.com/minio/minio/releases/tag/RELEASE.2022-10-29T06-21-33Z). This means if your storage was created with the old format, minio will no longer start. Unfortunately minio doesn't provide a an automatic migration, they only provide [instructions how to manually convert the node](https://min.io/docs/minio/windows/operations/install-deploy-manage/migrate-fs-gateway.html). To facilitate this migration we keep around the last version that still supports the old filesystem backend as `minio_legacy_fs`. Use it via `services.minio.package = minio_legacy_fs;` to export your data before switching to the new version. See the corresponding [issue](https://github.com/NixOS/nixpkgs/issues/199318) for more details. +- `minio` removed support for its legacy filesystem backend in [RELEASE.2022-10-29T06-21-33Z](https://github.com/minio/minio/releases/tag/RELEASE.2022-10-29T06-21-33Z). This means if your storage was created with the old format, minio will no longer start. Unfortunately, minio doesn't provide an automatic migration, they only provide [instructions how to manually convert the node](https://min.io/docs/minio/windows/operations/install-deploy-manage/migrate-fs-gateway.html). To facilitate this migration, we keep around the last version that still supports the old filesystem backend as `minio_legacy_fs`. Use it via `services.minio.package = minio_legacy_fs;` to export your data before switching to the new version. See the corresponding [issue](https://github.com/NixOS/nixpkgs/issues/199318) for more details. - `services.sourcehut.dispatch` and the corresponding package (`sourcehut.dispatchsrht`) have been removed due to [upstream deprecation](https://sourcehut.org/blog/2022-08-01-dispatch-deprecation-plans/). @@ -233,15 +242,20 @@ In addition to numerous new and upgraded packages, this release has the followin }; ``` -- The [services.snapserver.openFirewall](#opt-services.snapserver.openFirewall) module option default value has been changed from `true` to `false`. You will need to explicitly set this option to `true`, or configure your firewall. +- The default module options for [services.snapserver.openFirewall](#opt-services.snapserver.openFirewall), [services.tmate-ssh-server.openFirewall](#opt-services.tmate-ssh-server.openFirewall) and [services.unifi-video.openFirewall](#opt-services.unifi-video.openFirewall) have been changed from `true` to `false`. You will need to explicitly set this option to `true`, or configure your firewall. -- The [services.tmate-ssh-server.openFirewall](#opt-services.tmate-ssh-server.openFirewall) module option default value has been changed from `true` to `false`. You will need to explicitly set this option to `true`, or configure your firewall. +- The option `i18n.inputMethod.fcitx5.enableRimeData` has been removed. Default RIME data is now included in `fcitx5-rime` by default, and can be customized using -- The [services.unifi-video.openFirewall](#opt-services.unifi-video.openFirewall) module option default value has been changed from `true` to `false`. You will need to explicitly set this option to `true`, or configure your firewall. - -- The option `i18n.inputMethod.fcitx5.enableRimeData` has been removed. Default RIME data is now included in `fcitx5-rime` by default, and can be customized using `fcitx5-rime.override { rimeDataPkgs = [ pkgs.rime-data, package2, ... ]; }` + ```nix + fcitx5-rime.override { + rimeDataPkgs = [ + pkgs.rime-data + # ... + ]; + } + ``` -- The udev hwdb.bin file is now built with systemd-hwdb rather than the [deprecated "udevadm hwdb"](https://github.com/systemd/systemd/pull/25714). This may impact mappings where the same key is defined in multiple matching entries. The updated behavior will select the latest definition in case of conflict. In general, this should be a positive change, as the hwdb source files are designed with this ordering in mind. As an example, the mapping of the HP Dev One keyboard scan code for "mute mic" is corrected by this update. This change may impact users who have worked-around previously incorrect mappings. +- The `udev` hwdb.bin file is now built with systemd-hwdb rather than the [deprecated "udevadm hwdb"](https://github.com/systemd/systemd/pull/25714). This may impact mappings where the same key is defined in multiple matching entries. The updated behavior will select the latest definition in case of conflict. In general, this should be a positive change, as the hwdb source files are designed with this ordering in mind. As an example, the mapping of the HP Dev One keyboard scan code for "mute mic" is corrected by this update. This change may impact users who have worked-around previously incorrect mappings. - Kime has been updated from 2.5.6 to 3.0.2 and the `i18n.inputMethod.kime.config` option has been removed. Users should use `daemonModules`, `iconColor`, and `extraConfig` options under `i18n.inputMethod.kime` instead. @@ -249,27 +263,25 @@ In addition to numerous new and upgraded packages, this release has the followin - `i3status-rust` has been updated from 0.22.0 to 0.30.5, and this brings many changes to its configuration format. Additional information can be found [here](https://github.com/greshake/i3status-rust/blob/v0.30.0/NEWS.md). -- The `wordpress` derivation no longer contains any builtin plugins or themes. If you need them you have to add them back to prevent your site from breaking. You can find them in `wordpressPackages.{plugins,themes}`. +- The `wordpress` derivation no longer contains any built-in plugins or themes. If you need them, you have to add them back to prevent your site from breaking. You can find them in `wordpressPackages.{plugins,themes}`. - `llvmPackages_rocm.llvm` will not contain `clang` or `compiler-rt`. `llvmPackages_rocm.clang` will not contain `llvm`. `llvmPackages_rocm.clangNoCompilerRt` has been removed in favor of using `llvmPackages_rocm.clang-unwrapped`. -- `services.xserver.desktopManager.plasma5.excludePackages` has been moved to `environment.plasma5.excludePackages`, for consistency with other Desktop Environments +- `services.xserver.desktopManager.plasma5.excludePackages` has been moved to `environment.plasma5.excludePackages`, for consistency with other Desktop Environments. -- The EC2 image module previously detected and automatically mounted ext3-formatted instance store devices and partitions in stage-1 (initramfs), storing `/tmp` on the first discovered device. This behaviour, which only catered to very specific use cases and could not be disabled, has been removed. Users relying on this should provide their own implementation, and probably use ext4 and perform the mount in stage-2. +- `teleport` has been updated from major version 10 to major version 12. Please see upstream [upgrade instructions](https://goteleport.com/docs/setup/operations/upgrading/) and release notes for versions [11](https://goteleport.com/docs/changelog/#1100) and [12](https://goteleport.com/docs/changelog/#1201). Note that Teleport does not officially support upgrades across more than one major version at a time. If you're running Teleport server components, it is recommended to first upgrade to an intermediate 11.x version by setting `services.teleport.package = pkgs.teleport_11`. Afterwards, this option can be removed to upgrade to the default version (12). -- `teleport` has been upgraded from major version 10 to major version 12. Please see upstream [upgrade instructions](https://goteleport.com/docs/setup/operations/upgrading/) and release notes for versions [11](https://goteleport.com/docs/changelog/#1100) and [12](https://goteleport.com/docs/changelog/#1201). Note that Teleport does not officially support upgrades across more than one major version at a time. If you're running Teleport server components, it is recommended to first upgrade to an intermediate 11.x version by setting `services.teleport.package = pkgs.teleport_11`. Afterwards, this option can be removed to upgrade to the default version (12). +- The EC2 image module previously detected and automatically mounted ext3-formatted instance store devices and partitions in stage-1 (initramfs), storing `/tmp` on the first discovered device. This behaviour, which only catered to very specific use cases and could not be disabled, has been removed. Users relying on this should provide their own implementation, and probably use ext4 and perform the mount in stage-2. - The EC2 image module previously detected and activated swap-formatted instance store devices and partitions in stage-1 (initramfs). This behaviour has been removed. Users relying on this should provide their own implementation. -- `fail2ban` has been updated to 1.0.2, which has a few breaking changes compared to 0.11.2 ([changelog for 1.0.1](https://github.com/fail2ban/fail2ban/blob/1.0.1/ChangeLog), [changelog for 1.0.2](https://github.com/fail2ban/fail2ban/blob/1.0.2/ChangeLog)) - -- `albert` has been updated from 0.17.6 to 0.20.13, and 0.18.0 changed the config format and many plugins ([changelog for 0.18.0](https://github.com/albertlauncher/albert/blob/v0.18.0/CHANGELOG.md)) +- `gitlab` has been upgraded from major version 15 to major version 16 and requires at least PostgreSQL 13.6. Check the [upgrade guide](#module-services-postgres-upgrading) in the NixOS manual on how to upgrade your PostgreSQL installation. -- Calling `makeSetupHook` without passing a `name` argument is deprecated. +- `gitlab` 16 deprecates the use of external container registries, in our case `pkgs.docker-distribution`. Module users who have [`services.gitlab.registry.enable`](#opt-services.gitlab.registry.enable) set to `true` are advised to back up their state and switch to gitlab's fork by setting [`services.gitlab.registry.package`](#opt-services.gitlab.registry.package) to `pkgs.gitlab-container-registry`. -- Top-level buildPlatform,hostPlatform,targetPlatform have been deprecated, use stdenv.X instead. +- `fail2ban` has been updated to 1.0.2, which has a few breaking changes compared to 0.11.2 ([changelog for 1.0.1](https://github.com/fail2ban/fail2ban/blob/1.0.1/ChangeLog), [changelog for 1.0.2](https://github.com/fail2ban/fail2ban/blob/1.0.2/ChangeLog)) -- `lib.systems.examples.ghcjs` and consequently `pkgsCross.ghcjs` now use the target triplet `javascript-unknown-ghcjs` instead of `js-unknown-ghcjs`. This has been done to match an [upstream decision](https://gitlab.haskell.org/ghc/ghc/-/commit/6636b670233522f01d002c9b97827d00289dbf5c) to follow Cabal's platform naming more closely. Nixpkgs will also reject `js` as an architecture name. +- `albert` has been updated from 0.17.6 to 0.20.13, and 0.18.0 changed the config format and many plugins ([changelog for 0.18.0](https://github.com/albertlauncher/albert/blob/v0.18.0/CHANGELOG.md)) - `dokuwiki` has been updated from 2023-07-31a (Igor) to 2023-04-04 (Jack Jackrum), which has [completely removed](https://www.dokuwiki.org/changes#release_2023-04-04_jack_jackrum) the options to embed HTML and PHP for security reasons. The [htmlok plugin](https://www.dokuwiki.org/plugin:htmlok) can be used to regain this functionality. @@ -281,10 +293,6 @@ In addition to numerous new and upgraded packages, this release has the followin - The [services.wordpress.sites.<name>.plugins](#opt-services.wordpress.sites._name_.plugins) and [services.wordpress.sites.<name>.themes](#opt-services.wordpress.sites._name_.themes) options have been converted from sets to attribute sets to allow for consumers to specify explicit install paths via attribute name. -- [`services.nextcloud.database.createLocally`](#opt-services.nextcloud.database.createLocally) now uses socket authentication and is no longer compatible with password authentication. - - If you want the module to manage the database for you, unset [`services.nextcloud.config.dbpassFile`](#opt-services.nextcloud.config.dbpassFile) (and [`services.nextcloud.config.dbhost`](#opt-services.nextcloud.config.dbhost), if it's set). - - If you want to use password authentication **and** create the database locally, you will have to use [`services.mysql`](#opt-services.mysql.enable) to set it up. - - `protonmail-bridge` package has been updated to major version 3. - Nebula now runs as a system user and group created for each nebula network, using the `CAP_NET_ADMIN` ambient capability on launch rather than starting as root. Ensure that any files each Nebula instance needs to access are owned by the correct user and group, by default `nebula-${networkName}`. @@ -293,26 +301,20 @@ In addition to numerous new and upgraded packages, this release has the followin - In `mastodon` it is now necessary to specify location of file with `PostgreSQL` database password. In `services.mastodon.database.passwordFile` parameter default value `/var/lib/mastodon/secrets/db-password` has been changed to `null`. -- The `--target-host` and `--build-host` options of `nixos-rebuild` no longer treat the `localhost` value specially – to build on/deploy to local machine, omit the relevant flag. - - The `nix.readOnlyStore` option has been renamed to `boot.readOnlyNixStore` to clarify that it configures the NixOS boot process, not the Nix daemon. -- Deprecated `xlibsWrapper` transitional package has been removed in favour of direct use of its constituents: `xorg.libX11`, `freetype` and others. - - The latest available version of Nextcloud is v26 (available as `pkgs.nextcloud26`) which uses PHP 8.2 as interpreter by default. The installation logic is as follows: - If `system.stateVersion` is >=23.05, `pkgs.nextcloud26` will be installed by default. - If `system.stateVersion` is >=22.11, `pkgs.nextcloud25` will be installed by default. - Please note that an upgrade from v24 (or older) to v26 directly is not possible. Please upgrade to `nextcloud25` (or earlier) first. Nextcloud prohibits skipping major versions while upgrading. You can upgrade by declaring [`services.nextcloud.package = pkgs.nextcloud25;`](options.html#opt-services.nextcloud.package). - It's recommended to use the latest version available (i.e. v26) and to specify that using `services.nextcloud.package`. -- .NET 5.0 and .NET 3.1 were removed due to being end-of-life, use a newer, supported .NET version - https://dotnet.microsoft.com/en-us/platform/support/policy/dotnet-core +- .NET 5.0 and .NET 3.1 were removed due to being end-of-life, use a newer, supported .NET version. Visit the [Support Policy](https://dotnet.microsoft.com/en-us/platform/support/policy/dotnet-core) for more information. - The iputils package, which is installed by default, no longer provides the - `ninfod`, `rarpd` and `rdisc` tools. See - [upstream's release notes](https://github.com/iputils/iputils/releases/tag/20221126) - for more details and available replacements. + `ninfod`, `rarpd` and `rdisc` tools. See [upstream's release notes](https://github.com/iputils/iputils/releases/tag/20221126) for more details and available replacements. -- The ppp plugin `rp-pppoe.so` has been renamed to `pppoe.so` in ppp 2.4.9. Starting from ppp 2.5.0, there is no longer a alias for backwards compatibility. Configurations that use this plugin must be updated accordingly from `plugin rp-pppoe.so` to `plugin pppoe.so`. See [upstream change](https://github.com/ppp-project/ppp/commit/610a7bd76eb1f99f22317541b35001b1e24877ed). +- The ppp plugin `rp-pppoe.so` has been renamed to `pppoe.so` in ppp 2.4.9. Starting from ppp 2.5.0, there is no longer an alias for backwards compatibility. Configurations that use this plugin must be updated accordingly from `plugin rp-pppoe.so` to `plugin pppoe.so`. See [upstream change](https://github.com/ppp-project/ppp/commit/610a7bd76eb1f99f22317541b35001b1e24877ed). - [services.xserver.videoDrivers](options.html#opt-services.xserver.videoDrivers) now defaults to the `modesetting` driver over device-specific ones. The `radeon`, `amdgpu` and `nouveau` drivers are still available, but effectively unmaintained and not recommended for use. @@ -322,7 +324,7 @@ In addition to numerous new and upgraded packages, this release has the followin - In `services.fail2ban`, `bantime-increment.<name>` options now default to `null` (except `bantime-increment.enable`) and are used to set the corresponding option in `jail.local` only if not `null`. Also, enforce that `bantime-increment.formula` and `bantime-increment.multipliers` are not both specified. -- The default Asterisk package was changed to v20 from v19. Asterisk versions 16 and 19 have been dropped due to being EOL. You may need to update /var/lib/asterisk to match the template files in `${asterisk-20}/var/lib/asterisk`. +- The default `asterisk` package was changed to v20 from v19. Asterisk versions 16 and 19 have been dropped due to being EOL. You may need to update /var/lib/asterisk to match the template files in `${asterisk-20}/var/lib/asterisk`. - conntrack helper autodetection has been removed from kernels 6.0 and up upstream, and an assertion was added to ensure things don't silently stop working. Migrate your configuration to assign helpers explicitly or use an older LTS kernel branch as a temporary workaround. @@ -340,7 +342,7 @@ In addition to numerous new and upgraded packages, this release has the followin - The `qlandkartegt` and `garmindev` packages were removed due to being unmaintained and insecure. -- `go-ethereum` package has been updated to v1.11.5 and the `puppeth` command is no longer available as of v1.11.0. +- The `go-ethereum` package has been updated to v1.11.5 and the `puppeth` command is no longer available as of v1.11.0. - The `pnpm` package has be updated to from version 7.29.1 to version 8.1.1 and Node.js 14 support has been discontinued (though, there are workarounds if Node.js 14 is still required) - Migration instructions: ["Before updating pnpm to v8 in your CI, regenerate your pnpm-lock.yaml. To upgrade your lockfile, run pnpm install and commit the changes. Existing dependencies will not be updated; however, due to configuration changes in pnpm v8, some missing peer dependencies may be added to the lockfile and some packages may get deduplicated. You can commit the new lockfile even before upgrading Node.js in the CI, as pnpm v7 already supports the new lockfile format."](https://github.com/pnpm/pnpm/releases/tag/v8.0.0) @@ -349,21 +351,21 @@ In addition to numerous new and upgraded packages, this release has the followin - The `pict-rs` package was updated from an 0.3 alpha release to 0.3 stable, and related environment variables now require two underscores instead of one. -- `espanso` has been updated to major version 2. Therefore, migration steps may need to be performed. See [the official migration instructions](https://espanso.org/docs/migration/overview/) for how to perform these migrations. Further, `espanso-wayland` can now be used for Wayland support. - -## Other Notable Changes {#sec-release-23.05-notable-changes} +- The `shattered-pixel-dungeon` game was updated from 1.1.2 to 2.0.2. + - The location of game data has changed. To migrate it, run `mv ~/.shatteredpixel ~/.local/share/.shatteredpixel` + - The update will delete all your in-progress games. -<!-- To avoid merge conflicts, consider adding your item at an arbitrary place in the list instead. --> +- `espanso` has been updated to major version 2. Therefore, migration steps may need to be performed. See [the official migration instructions](https://espanso.org/docs/migration/overview/) for how to perform these migrations. Further, `espanso-wayland` can now be used for Wayland support. -- `vim_configurable` has been renamed to `vim-full` to avoid confusion: `vim-full`'s build-time features are configurable, but both `vim` and `vim-full` are _customizable_ (in the sense of user configuration, like vimrc). +- Only `k3s` version 1.26 is included. Users of the `k3s_1_24` or `k3s_1_25` packages should upgrade to use the `1.26` version of the package. -- Pantheon now defaults to Mutter 43 and GNOME settings daemon 43, all Pantheon packages are now tracking elementary OS 7 updates. +- The `nerdfonts` package has been updated to major version 3, which includes potential [breaking changes](https://github.com/ryanoasis/nerd-fonts/releases/tag/v3.0.0). -- The module for the application firewall `opensnitch` got the ability to configure rules. Available as [services.opensnitch.rules](#opt-services.opensnitch.rules) +## Other Notable Changes {#sec-release-23.05-notable-changes} -- The module `usbmuxd` now has the ability to change the package used by the daemon. In case you're experiencing issues with `usbmuxd` you can try an alternative program like `usbmuxd2`. Available as [services.usbmuxd.package](#opt-services.usbmuxd.package) +<!-- To avoid merge conflicts, consider adding your item at an arbitrary place in the list instead. --> -- A few openssh options have been moved from extraConfig to the new freeform option `settings` and renamed as follows: +- To follow [RFC 0042](https://github.com/NixOS/rfcs/blob/master/rfcs/0042-config-option.md) a few options of `openssh` have been moved from `extraConfig` to the new freeform option `settings` and renamed, e.g.: - `services.openssh.forwardX11` to `services.openssh.settings.X11Forwarding` - `services.openssh.kbdInteractiveAuthentication` -> `services.openssh.settings.KbdInteractiveAuthentication` - `services.openssh.passwordAuthentication` to `services.openssh.settings.PasswordAuthentication` @@ -375,17 +377,20 @@ In addition to numerous new and upgraded packages, this release has the followin - `services.openssh.ciphers` to `services.openssh.settings.Ciphers` - `services.openssh.gatewayPorts` to `services.openssh.settings.GatewayPorts` -- `netbox` was updated to 3.5. NixOS' `services.netbox.package` still defaults to 3.3 if `stateVersion` is earlier than 23.05. Please review upstream's breaking changes [for 3.4.0](https://github.com/netbox-community/netbox/releases/tag/v3.4.0) and [for 3.5.0](https://github.com/netbox-community/netbox/releases/tag/v3.5.0), and upgrade NetBox by changing `services.netbox.package`. Database migrations will be run automatically. -- `services.netbox` now support RFC42-style options, through `services.netbox.settings`. +- `vim_configurable` has been renamed to `vim-full` to avoid confusion: `vim-full`'s build-time features are configurable, but both `vim` and `vim-full` are _customizable_ (in the sense of user configuration, like vimrc). -- `services.mastodon` gained a tootctl wrapped named `mastodon-tootctl` similar to `nextcloud-occ` which can be executed from any user and switches to the configured mastodon user with sudo and sources the environment variables. +- Pantheon now defaults to Mutter 43 and GNOME settings daemon 43, all Pantheon packages are now tracking elementary OS 7 updates. -- DocBook option documentation, which has been deprecated since 22.11, will now cause a warning when documentation is built. Out-of-tree modules should migrate to using CommonMark documentation as outlined in [](#sec-option-declarations) to silence this warning. +- The module for the application firewall `opensnitch` got the ability to configure rules. Available as [services.opensnitch.rules](#opt-services.opensnitch.rules) - DocBook option documentation support will be removed in the next release and CommonMark will become the default. DocBook option documentation that has not been migrated until then will no longer render properly or cause errors. +- The module `usbmuxd` now has the ability to change the package used by the daemon. In case you're experiencing issues with `usbmuxd` you can try an alternative program like `usbmuxd2`. Available as [services.usbmuxd.package](#opt-services.usbmuxd.package) + +- `netbox` was updated to 3.5. NixOS' `services.netbox.package` still defaults to 3.3 if `stateVersion` is earlier than 23.05. Please review upstream's breaking changes [for 3.4.0](https://github.com/netbox-community/netbox/releases/tag/v3.4.0) and [for 3.5.0](https://github.com/netbox-community/netbox/releases/tag/v3.5.0), and upgrade NetBox by changing `services.netbox.package`. Database migrations will be run automatically. -- NixOS now defaults to using nsncd (a non-caching reimplementation in Rust) as NSS lookup dispatcher, instead of the buggy and deprecated glibc-provided nscd. If you need to switch back, set `services.nscd.enableNsncd = false`, but please open an issue in nixpkgs so your issue can be fixed. +- `services.netbox` now support RFC42-style options, through `services.netbox.settings`. + +- `services.mastodon` gained a tootctl wrapped named `mastodon-tootctl` similar to `nextcloud-occ` which can be executed from any user and switches to the configured mastodon user with sudo and sources the environment variables. - `services.borgmatic` now allows for multiple configurations, placed in `/etc/borgmatic.d/`, you can define them with `services.borgmatic.configurations`. @@ -404,8 +409,6 @@ In addition to numerous new and upgraded packages, this release has the followin `services.dnsmasq.extraConfig` will be deprecated when NixOS 22.11 reaches end of life. -- `kube3d` has now been renamed to `k3d` since the 3d editor that originally took that name has been dropped from nixpkgs. `kube3d` will continue to work as an alias for now. - - The `dokuwiki` service is now configured via `services.dokuwiki.sites.<name>.settings` attribute set; `extraConfig` has been removed. The `{aclUse,superUser,disableActions}` attributes have been renamed accordingly. `pluginsConfig` now only accepts an attribute set of booleans. Passing plain PHP is no longer possible. @@ -428,106 +431,84 @@ In addition to numerous new and upgraded packages, this release has the followin If undesired, the old behavior can be restored by overriding the builders with `{ installDocumentation = false; }`. -- The new option `networking.nftables.checkRuleset` controls whether the ruleset is checked for syntax or not during build. It is `true` by default. The check might fail because it is in a sandbox environment. To circumvent this, the ruleset file can be edited using the `networking.nftables.preCheckRuleset` option. +- The nftables module now validates its ruleset at build time. The new `networking.nftables.checkRuleset` option allows disabling this check, which may fail when rules have very specific requirements, that the sandbox environment, by default, will not cover. The `networking.nftables.preCheckRuleset` option can be used to prepare the environment before the checks are run. + +- The `services.mastodon` module now supports connection to a remote `PostgreSQL` database. -- `mastodon` now supports connection to a remote `PostgreSQL` database. +- [`services.nextcloud.database.createLocally`](#opt-services.nextcloud.database.createLocally) now uses socket authentication and is no longer compatible with password authentication. + - If you want the module to manage the database for you, unset [`services.nextcloud.config.dbpassFile`](#opt-services.nextcloud.config.dbpassFile) (and [`services.nextcloud.config.dbhost`](#opt-services.nextcloud.config.dbhost), if it's set). + - If you want to use password authentication **and** create the database locally, you will have to use [`services.mysql`](#opt-services.mysql.enable) to set it up. -- `nextcloud` has an option to enable SSE-C in S3. +- [`services.nextcloud.config.objectstore.s3.sseCKeyFile`](#opt-services.nextcloud.config.objectstore.s3.sseCKeyFile) is a new option to enable server-side encryption with customer provided keys (SSE-C) for your S3 in Nextcloud. -- NixOS swap partitions with random encryption can now control the sector size, cipher, and key size used to setup the plain encryption device over the - underlying block device rather than allowing them to be determined by `cryptsetup(8)`. One can use these features like so: +- NixOS swap partitions with random encryption can now control the sector size, cipher, and key size used to set up the plain encryption device over the underlying block device rather than allowing them to be determined by `cryptsetup(8)`. One can use these features like so: ```nix - { - swapDevices = [ - { - device = "/dev/disk/by-partlabel/swapspace"; - - randomEncryption = { - enable = true; - cipher = "aes-xts-plain64"; - keySize = 512; - sectorSize = 4096; - }; - } - ]; - } + swapDevices = [ { + device = "/dev/disk/by-partlabel/swapspace"; + randomEncryption = { + enable = true; + cipher = "aes-xts-plain64"; + keySize = 512; + sectorSize = 4096; + }; + } ]; ``` - New option `security.pam.zfs` to enable unlocking and mounting of encrypted ZFS home dataset at login. -- `services.peertube` now requires you to specify the secret file `secrets.secretsFile`. It can be generated by running `openssl rand -hex 32`. - Before upgrading, read the release notes for PeerTube: - - [Release v5.0.0](https://github.com/Chocobozzz/PeerTube/releases/tag/v5.0.0) - - And backup your data. +- `services.peertube` now requires you to specify the secret file `secrets.secretsFile`. It can be generated by running `openssl rand -hex 32`. Before upgrading, check the release notes for [PeerTube v5.0.0](https://github.com/Chocobozzz/PeerTube/releases/tag/v5.0.0).And backup your data. - `services.chronyd` is now started with additional systemd sandbox/hardening options for better security. -- PostgreSQL has opt-in support for [JIT compilation](https://www.postgresql.org/docs/current/jit-reason.html). It can be enabled like this: +- PostgreSQL has added opt-in support for [JIT compilation](https://www.postgresql.org/docs/current/jit-reason.html). It can be enabled like this: ```nix - { - services.postgresql = { - enable = true; - enableJIT = true; - }; - } + services.postgresql.enableJIT = true; ``` -- `services.netdata` offers a `deadlineBeforeStopSec` option which enable users who have netdata instance that takes time to initialize to not have systemd kill them for no reason. +- `services.netdata` offers a [`services.netdata.deadlineBeforeStopSec`](#opt-services.netdata.deadlineBeforeStopSec) option which will control the deadline (in seconds) after which systemd will consider your netdata instance as dead if it didn't start in the elapsed time. It is helpful when your netdata instance takes longer to start because of a large amount of state or upgrades. -- `services.dhcpcd` service now don't solicit or accept IPv6 Router Advertisements on interfaces that use static IPv6 addresses. - If network uses both IPv6 Unique local addresses (ULA) and global IPv6 address auto-configuration with SLAAC, must add the parameter `networking.dhcpcd.IPv6rs = true;`. +- `services.dhcpcd` service stopped soliciting or accepting IPv6 Router Advertisements on interfaces that use static IPv6 addresses. + If your network provides both IPv6 unique local addresses (ULA) and globally unique addresses (GUA) through autoconfiguration with SLAAC, you must add the parameter `networking.dhcpcd.IPv6rs = true;`. - The module `services.headscale` was refactored to be compliant with [RFC 0042](https://github.com/NixOS/rfcs/blob/master/rfcs/0042-config-option.md). To be precise, this means that the following things have changed: - - Most settings has been migrated under [services.headscale.settings](#opt-services.headscale.settings) which is an attribute-set that - will be converted into headscale's YAML config format. This means that the configuration from - [headscale's example configuration](https://github.com/juanfont/headscale/blob/main/config-example.yaml) - can be directly written as attribute-set in Nix within this option. + - Most settings have been migrated below [services.headscale.settings](#opt-services.headscale.settings) which is a freeform attribute-set that will be converted into headscale's YAML config format. This means that the configuration from [headscale's example configuration](https://github.com/juanfont/headscale/blob/main/config-example.yaml) can be directly written as attribute-set in Nix within this option. - `services.kubo` now unmounts `ipfsMountDir` and `ipnsMountDir` even if it is killed unexpectedly when `autoMount` is enabled. -- `nixos/lib/make-disk-image.nix` can now mutate EFI variables, run user-provided EFI firmware or variable templates. This is now extensively documented in the NixOS manual. - -- `services.grafana` listens only on localhost by default again. This was changed to upstreams default of `0.0.0.0` by accident in the freeform setting conversion. +- `services.grafana` listens only on localhost by default again. This was changed to the upstream default of `0.0.0.0` by accident in the freeform setting conversion. - Grafana Tempo has been updated to version 2.0. See the [upstream upgrade guide](https://grafana.com/docs/tempo/latest/release-notes/v2-0/#upgrade-considerations) for migration instructions. -- A new `virtualisation.rosetta` module was added to allow running `x86_64` binaries through [Rosetta](https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment) inside virtualised NixOS guests on Apple silicon. This feature works by default with the [UTM](https://docs.getutm.app/) virtualisation [package](https://search.nixos.org/packages?channel=unstable&show=utm&from=0&size=1&sort=relevance&type=packages&query=utm). +- A new `virtualisation.rosetta` module was added to allow running `x86_64` binaries through [Rosetta](https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment) inside virtualised NixOS guests on Apple Silicon. This feature works by default with the [UTM](https://docs.getutm.app/) virtualisation [package](https://search.nixos.org/packages?channel=23.05&show=utm&from=0&size=1&sort=relevance&type=packages&query=utm). - The new option `users.motdFile` allows configuring a Message Of The Day that can be updated dynamically. - The `root` package is now built with the `"-Dgnuinstall=ON"` CMake flag, making the output conform the `bin` `lib` `share` layout. In this layout, `tutorials` is under `share/doc/ROOT/`; `cmake`, `font`, `icons`, `js` and `macro` under `share/root`; `Makefile.comp` and `Makefile.config` under `etc/root`. -- Enabling global redirect in `services.nginx.virtualHosts` now allows one to add exceptions with the `locations` option. +- There are various new options in the `services.nginx` module: + - Enabling global redirect in `services.nginx.virtualHosts` now allows one to add exceptions with the `locations` option. + - The `proxyCachePath` option has been added to `services.nginx`. It allows configuring the [`proxy_cache_path`](https://nginx.org/en/docs/http/ngx_http_proxy_module.html#proxy_cache_path), that configures the storage path and various other settings for the cache. + - A new option `recommendedBrotliSettings` has been added to `services.nginx`. Learn more about compression in Brotli format [here](https://github.com/google/ngx_brotli/blob/master/README.md). + - `services.nginx.recommendedProxySettings` now removes the `Connection` header preventing clients from closing backend connections. -- A new option `proxyCachePath` has been added to `services.nginx`. Learn more about proxy_cache_path: <https://nginx.org/en/docs/http/ngx_http_proxy_module.html#proxy_cache_path>. - -- A new option `recommendedBrotliSettings` has been added to `services.nginx`. Learn more about compression in Brotli format [here](https://github.com/google/ngx_brotli/blob/master/README.md). - -- Updated recommended settings in `services.nginx.recommendedGzipSettings`: +- The nginx module also received an update to `services.nginx.recommendedGzipSettings`: - Enables gzip compression for only certain proxied requests. - Allow checking and loading of precompressed files. - Updated gzip mime-types. - Increased the minimum length of a response that will be gzipped. -- [Garage](https://garagehq.deuxfleurs.fr/) version is based on [system.stateVersion](options.html#opt-system.stateVersion), existing installations will keep using version 0.7. New installations will use version 0.8. In order to upgrade a Garage cluster, please follow [upstream instructions](https://garagehq.deuxfleurs.fr/documentation/cookbook/upgrading/) and force [services.garage.package](options.html#opt-services.garage.package) or upgrade accordingly [system.stateVersion](options.html#opt-system.stateVersion). +- [Garage](https://garagehq.deuxfleurs.fr/) version is based on [system.stateVersion](options.html#opt-system.stateVersion), existing installations will keep using version 0.7. New installations will use version 0.8. In order to upgrade a Garage cluster, please follow [upstream instructions](https://garagehq.deuxfleurs.fr/documentation/cookbook/upgrading/) and configure [services.garage.package](options.html#opt-services.garage.package). - Nebula now supports the `services.nebula.networks.<name>.isRelay` and `services.nebula.networks.<name>.relays` configuration options for setting up or allowing traffic relaying. See the [announcement](https://www.defined.net/blog/announcing-relay-support-in-nebula/) for more details about relays. -- `hip` has been separated into `hip`, `hip-common` and `hipcc`. - -- `services.nginx.recommendedProxySettings` now removes the `Connection` header preventing clients from closing backend connections. - - Resilio sync secret keys can now be provided using a secrets file at runtime, preventing these secrets from ending up in the Nix store. -- The `firewall` and `nat` module now has a nftables based implementation. Enable `networking.nftables` to use it. +- The `firewall` and `nat` modules can now optionally rely on an nftables based implementation. Enable `networking.nftables` to use it. - The `services.fwupd` module now allows arbitrary daemon settings to be configured in a structured manner ([`services.fwupd.daemonSettings`](#opt-services.fwupd.daemonSettings)). -- Nixpkgs now uses [IEEE-standard floating point arithmetic](https://github.com/NixOS/nixpkgs/pull/170215) on `powerpc64le-linux`. - - `services.xserver.desktopManager.plasma5.phononBackend` now defaults to vlc according to [upstrean recommendation](https://community.kde.org/Distributions/Packaging_Recommendations#Non-Plasma_packages) - The `zramSwap` is now implemented with `zram-generator`, and the option `zramSwap.numDevices` for using ZRAM devices as general purpose ephemeral block devices has been removed. @@ -538,19 +519,13 @@ In addition to numerous new and upgraded packages, this release has the followin * `apptainer`: From `github.com/apptainer/apptainer`, which is the new repo after renaming. * `singularity`: From `github.com/sylabs/singularity`, which is the fork by Sylabs Inc.. - `programs.singularity` got a new `package` option to specify which package to use. - `singularity-tools.buildImage` got a new input argument `singularity` to specify which package to use. - The new option `programs.singularity.enableFakeroot`, if set to `true`, provides `--fakeroot` support for `apptainer` and `singularity`. -- The `unifi-poller` package and corresponding NixOS module have been renamed to `unpoller` to match upstream. - -- The `rtsp-simple-server` package and corresponding NixOS module have been renamed to `mediamtx` to match upstream. - - The new option `services.tailscale.useRoutingFeatures` controls various settings for using Tailscale features like exit nodes and subnet routers. If you wish to use your machine as an exit node, you can set this setting to `server`, otherwise if you wish to use an exit node you can set this setting to `client`. The strict RPF warning has been removed as the RPF will be loosened automatically based on the value of this setting. -- `openjdk` from version 11 and above is not build with `openjfx` (i.e.: JavaFX) support by default anymore. You can re-enable it by overriding, e.g.: `openjdk11.override { enableJavaFX = true; };`. +- `openjdk` from versioggn 11 and above is not build with `openjfx` (i.e.: JavaFX) support by default anymore. You can re-enable it by overriding, e.g.: `openjdk11.override { enableJavaFX = true; };`. - [Xastir](https://xastir.org/index.php/Main_Page) can now access AX.25 interfaces via the `libax25` package. @@ -560,24 +535,49 @@ In addition to numerous new and upgraded packages, this release has the followin - The option `services.prometheus.exporters.pihole.interval` does not exist anymore and has been removed. -- The option `services.gpsd.device` has been replaced with - `services.gpsd.devices`, which supports multiple devices. +- The option `services.gpsd.device` has been replaced with `services.gpsd.devices`, which supports multiple devices. -- `k3s` can now be configured with an EnvironmentFile for its systemd service, allowing secrets to be provided without ending up in the Nix Store. +- `k3s` can now be configured with an `EnvironmentFile` for its systemd service, allowing secrets to be provided without ending up in the Nix Store. -- `gitea` module options have been changed to be RFC042 conforming (i.e. some options were moved to be located under `services.gitea.settings`) +- The `gitea` module options have been moved into a freeform attribute set below `services.gitea.settings`. -- `boot.initrd.luks.device.<name>` has a new `tryEmptyPassphrase` option, this is useful for OEM's who need to install an encrypted disk with a future settable passphrase +- `boot.initrd.luks.device.<name>` has a new `tryEmptyPassphrase` option, this is useful for OEMs who need to install an encrypted disk with a future settable passphrase -- there is a new `boot/stratisroot.nix` module that enables booting from a volume managed by the Stratis storage management daemon. Use `fileSystems.<name>.stratis.poolUuid` to configure the pool containing the fs. +- The `bind` module now allows the per-zone `allow-query` setting to be configured (previously it was hard-coded to `any`; it still defaults to `any` to retain compatibility). + +- The option `services.jitsi-videobridge.apis` has been renamed to `colibriRestApi` and turned into a boolean. Setting it to `true` will enable the private rest API, useful for monitoring using `services.prometheus.exporters.jitsi.enable`. Learn more about the API: "[The COLIBRI control interface (/colibri/)](https://github.com/jitsi/jitsi-videobridge/blob/v2.3/doc/rest.md)". + +- Booting from a volume managed by the Stratis storage management daemon is now supported. Use `fileSystems.<name>.stratis.poolUuid` to configure the pool containing the fs. + +## Nixpkgs internals {#sec-release-23.05-nixpkgs-internals} + +- `buildDunePackage` now defaults to `strictDeps = true` which means that any library should go into `buildInputs` or `checkInputs`. Any executable that is run on the building machine should go into `nativeBuildInputs` or `nativeCheckInputs` respectively. Example of executables are `ocaml`, `findlib` and `menhir`. PPXs are libraries which are built by dune and should therefore not go into `nativeBuildInputs`. + +- `buildFHSUserEnv` is now called `buildFHSEnv` and uses FlatPak's Bubblewrap sandboxing tool rather than Nixpkgs' own chrootenv. The old chrootenv-based implemenation is still available via `buildFHSEnvChrootenv` but is considered deprecated and will be removed when the remaining uses inside Nixpkgs have been migrated. If your FHSEnv-wrapped application misbehaves when using the new bubblewrap implementation, please create an issue in Nixpkgs. + +- Top-level `buildPlatform`, `hostPlatform`, `targetPlatform` have been deprecated, use `stdenv.X` instead. + +- `carnix` and `cratesIO` has been removed due to being unmaintained, use alternatives such as [naersk](https://github.com/nix-community/naersk) and [crate2nix](https://github.com/kolloch/crate2nix) instead. + +- `checkInputs` have been renamed to `nativeCheckInputs`, because they behave the same as `nativeBuildInputs` when `doCheck` is set. `checkInputs` now denote a new type of dependencies, added to `buildInputs` when `doCheck` is set. As a rule of thumb, `nativeCheckInputs` are tools on `$PATH` used during the tests, and `checkInputs` are libraries which are linked to executables built as part of the tests. Similarly, `installCheckInputs` are renamed to `nativeInstallCheckInputs`, corresponding to `nativeBuildInputs`, and `installCheckInputs` are a new type of dependencies added to `buildInputs` when `doInstallCheck` is set. (Note that this change will not cause breakage to derivations with `strictDeps` unset, which are most packages except python, rust, ocaml and go packages). + +- DocBook option documentation, which has been deprecated since 22.11, will now cause a warning when documentation is built. Out-of-tree modules should migrate to using CommonMark documentation as outlined in [](#sec-option-declarations) to silence this warning. + + DocBook option documentation support will be removed in the next release and CommonMark will become the default. DocBook option documentation that has not been migrated until then will no longer render properly or cause errors. + +- `lib.systems.examples.ghcjs` and consequently `pkgsCross.ghcjs` now use the target triplet `javascript-unknown-ghcjs` instead of `js-unknown-ghcjs`. This has been done to match an [upstream decision](https://gitlab.haskell.org/ghc/ghc/-/commit/6636b670233522f01d002c9b97827d00289dbf5c) to follow Cabal's platform naming more closely. Nixpkgs will also reject `js` as an architecture name. - Lisp gained a [manual section](https://nixos.org/manual/nixpkgs/stable/#lisp), documenting a new and backwards incompatible interface. The previous interface will be removed in a future release. -- The `bind` module now allows the per-zone `allow-query` setting to be configured (previously it was hard-coded to `any`; it still defaults to `any` to retain compatibility). +- Calling `makeSetupHook` without passing a `name` argument is deprecated. -- `make-disk-image` handles `contents` arguments that are directories better, fixing a bug where it used to put them in a subdirectory of the intended `target`. +- `nixos/lib/make-disk-image.nix` handles `contents` arguments that are directories better, fixing a bug where it used to put them in a subdirectory of the intended `target`. -- The option `services.jitsi-videobridge.apis` has been renamed to `colibriRestApi` and turned into a boolean. Setting it to `true` will enable the private rest API, useful for monitoring using `services.prometheus.exporters.jitsi.enable`. Learn more about the API: "[The COLIBRI control interface (/colibri/)](https://github.com/jitsi/jitsi-videobridge/blob/v2.3/doc/rest.md)". +- `nixos/lib/make-disk-image.nix` can now mutate EFI variables, run user-provided EFI firmware or variable templates. This is now extensively documented in the NixOS manual. + +- Nixpkgs now uses [IEEE-standard floating point arithmetic](https://github.com/NixOS/nixpkgs/pull/170215) on `powerpc64le-linux`. + +- Deprecated `xlibsWrapper` transitional package has been removed in favour of direct use of its constituents: `xorg.libX11`, `freetype` and others. ## Detailed migration information {#sec-release-23.05-migration} diff --git a/nixos/doc/manual/release-notes/rl-2311.section.md b/nixos/doc/manual/release-notes/rl-2311.section.md index ef4465d9ddfd4..bf210c719bbee 100644 --- a/nixos/doc/manual/release-notes/rl-2311.section.md +++ b/nixos/doc/manual/release-notes/rl-2311.section.md @@ -8,20 +8,36 @@ - Create the first release note entry in this section! +- [acme-dns](https://github.com/joohoi/acme-dns), a limited DNS server to handle ACME DNS challenges easily and securely. Available as [services.acme-dns](#opt-services.acme-dns.enable). + <!-- To avoid merge conflicts, consider adding your item at an arbitrary place in the list instead. --> - [river](https://github.com/riverwm/river), A dynamic tiling wayland compositor. Available as [programs.river](#opt-programs.river.enable). +- [sitespeed-io](https://sitespeed.io), a tool that can generate metrics (timings, diagnostics) for websites. Available as [services.sitespeed-io](#opt-services.sitespeed-io.enable). + ## Backward Incompatibilities {#sec-release-23.11-incompatibilities} +- `writeTextFile` now requires `executable` to be boolean, values like `null` or `""` will now fail to evaluate. + - The latest version of `clonehero` now stores custom content in `~/.clonehero`. See the [migration instructions](https://clonehero.net/2022/11/29/v23-to-v1-migration-instructions.html). Typically, these content files would exist along side the binary, but the previous build used a wrapper script that would store them in `~/.config/unity3d/srylain Inc_/Clone Hero`. +- `python3.pkgs.fetchPypi` (and `python3Packages.fetchPypi`) has been deprecated in favor of top-level `fetchPypi`. + - `etcd` has been updated to 3.5, you will want to read the [3.3 to 3.4](https://etcd.io/docs/v3.5/upgrades/upgrade_3_4/) and [3.4 to 3.5](https://etcd.io/docs/v3.5/upgrades/upgrade_3_5/) upgrade guides +- `util-linux` is now supported on Darwin and is no longer an alias to `unixtools`. Use the `unixtools.util-linux` package for access to the Apple variants of the utilities. + +- `fileSystems.<name>.autoFormat` now uses `systemd-makefs`, which does not accept formatting options. Therefore, `fileSystems.<name>.formatOptions` has been removed. + +- `fileSystems.<name>.autoResize` now uses `systemd-growfs` to resize the file system online in stage 2. This means that `f2fs` and `ext2` can no longer be auto resized, while `xfs` and `btrfs` now can be. + ## Other Notable Changes {#sec-release-23.11-notable-changes} - The Cinnamon module now enables XDG desktop integration by default. If you are experiencing collisions related to xdg-desktop-portal-gtk you can safely remove `xdg.portal.extraPortals = [ pkgs.xdg-desktop-portal-gtk ];` from your NixOS configuration. +- `fontconfig` now defaults to using greyscale antialiasing instead of subpixel antialiasing because of a [recommendation from one of the downstreams](https://gitlab.freedesktop.org/fontconfig/fontconfig/-/issues/337). You can change this value by configuring [](#opt-fonts.fontconfig.subpixel.rgba) accordingly. + - A new option was added to the virtualisation module that enables specifying explicitly named network interfaces in QEMU VMs. The existing `virtualisation.vlans` is still supported for cases where the name of the network interface is irrelevant. - `services.nginx` gained a `defaultListen` option at server-level with support for PROXY protocol listeners, also `proxyProtocol` is now exposed in `services.nginx.virtualHosts.<name>.listen` option. It is now possible to run PROXY listeners and non-PROXY listeners at a server-level, see [#213510](https://github.com/NixOS/nixpkgs/pull/213510/) for more details. diff --git a/nixos/maintainers/scripts/ec2/amazon-image.nix b/nixos/maintainers/scripts/ec2/amazon-image.nix index 490a79e0b66c1..d12339bca1f8f 100644 --- a/nixos/maintainers/scripts/ec2/amazon-image.nix +++ b/nixos/maintainers/scripts/ec2/amazon-image.nix @@ -43,7 +43,7 @@ in { sizeMB = mkOption { type = with types; either (enum [ "auto" ]) int; - default = 2048; + default = 3072; example = 8192; description = lib.mdDoc "The size in MB of the image"; }; diff --git a/nixos/modules/config/fonts/fontconfig.nix b/nixos/modules/config/fonts/fontconfig.nix index 5781679241eff..2eee5cd34d063 100644 --- a/nixos/modules/config/fonts/fontconfig.nix +++ b/nixos/modules/config/fonts/fontconfig.nix @@ -77,18 +77,6 @@ let <edit mode="append" name="autohint"> ${fcBool cfg.hinting.autohint} </edit> - <edit mode="append" name="hintstyle"> - <const>${cfg.hinting.style}</const> - </edit> - <edit mode="append" name="antialias"> - ${fcBool cfg.antialias} - </edit> - <edit mode="append" name="rgba"> - <const>${cfg.subpixel.rgba}</const> - </edit> - <edit mode="append" name="lcdfilter"> - <const>lcd${cfg.subpixel.lcdfilter}</const> - </edit> </match> </fontconfig> @@ -177,6 +165,13 @@ let </fontconfig> ''; + # Replace default linked config with a different variant + replaceDefaultConfig = defaultConfig: newConfig: '' + rm $dst/${defaultConfig} + ln -s ${pkg.out}/share/fontconfig/conf.avail/${newConfig} \ + $dst/ + ''; + # fontconfig configuration package confPkg = pkgs.runCommand "fontconfig-conf" { preferLocalBuild = true; @@ -196,6 +191,26 @@ let ln -s ${pkg.out}/etc/fonts/conf.d/*.conf \ $dst/ + ${optionalString (!cfg.antialias) + (replaceDefaultConfig "10-yes-antialias.conf" + "10-no-antialias.conf") + } + + ${optionalString (cfg.hinting.style != "slight") + (replaceDefaultConfig "10-hinting-slight.conf" + "10-hinting-${cfg.hinting.style}.conf") + } + + ${optionalString (cfg.subpixel.rgba != "none") + (replaceDefaultConfig "10-sub-pixel-none.conf" + "10-sub-pixel-${cfg.subpixel.rgba}.conf") + } + + ${optionalString (cfg.subpixel.lcdfilter != "default") + (replaceDefaultConfig "11-lcdfilter-default.conf" + "11-lcdfilter-${cfg.subpixel.lcdfilter}.conf") + } + # 00-nixos-cache.conf ln -s ${cacheConf} $dst/00-nixos-cache.conf @@ -367,17 +382,25 @@ in }; style = mkOption { - type = types.enum [ "hintnone" "hintslight" "hintmedium" "hintfull" ]; - default = "hintslight"; + type = types.enum ["none" "slight" "medium" "full"]; + default = "slight"; description = lib.mdDoc '' Hintstyle is the amount of font reshaping done to line up to the grid. - hintslight will make the font more fuzzy to line up to the grid - but will be better in retaining font shape, while hintfull will - be a crisp font that aligns well to the pixel grid but will lose - a greater amount of font shape. + slight will make the font more fuzzy to line up to the grid but + will be better in retaining font shape, while full will be a + crisp font that aligns well to the pixel grid but will lose a + greater amount of font shape. ''; + apply = + val: + let + from = "fonts.fontconfig.hinting.style"; + val' = lib.removePrefix "hint" val; + warning = "The option `${from}` contains a deprecated value `${val}`. Use `${val'}` instead."; + in + lib.warnIf (lib.hasPrefix "hint" val) warning val'; }; }; @@ -394,7 +417,7 @@ in subpixel = { rgba = mkOption { - default = "rgb"; + default = "none"; type = types.enum ["rgb" "bgr" "vrgb" "vbgr" "none"]; description = lib.mdDoc '' Subpixel order. The overwhelming majority of displays are diff --git a/nixos/modules/config/no-x-libs.nix b/nixos/modules/config/no-x-libs.nix index dac09bdf468a9..0dce3b918458a 100644 --- a/nixos/modules/config/no-x-libs.nix +++ b/nixos/modules/config/no-x-libs.nix @@ -38,6 +38,7 @@ with lib; gpsd = super.gpsd.override { guiSupport = false; }; graphviz = super.graphviz-nox; gst_all_1 = super.gst_all_1 // { + gst-plugins-bad = super.gst_all_1.gst-plugins-bad.override { guiSupport = false; }; gst-plugins-base = super.gst_all_1.gst-plugins-base.override { enableX11 = false; }; }; imagemagick = super.imagemagick.override { libX11Support = false; libXtSupport = false; }; diff --git a/nixos/modules/config/qt.nix b/nixos/modules/config/qt.nix index 6405166920e02..cf4e9621d70dd 100644 --- a/nixos/modules/config/qt.nix +++ b/nixos/modules/config/qt.nix @@ -20,7 +20,7 @@ let pkgs.adwaita-qt6 ] else if isQtStyle then [ pkgs.libsForQt5.qtstyleplugins ] - else if isQt5ct then [ pkgs.libsForQt5.qt5ct ] + else if isQt5ct then [ pkgs.libsForQt5.qt5ct pkgs.qt6Packages.qt6ct ] else if isLxqt then [ pkgs.lxqt.lxqt-qtplugin pkgs.lxqt.lxqt-config ] else if isKde then [ pkgs.libsForQt5.plasma-integration pkgs.libsForQt5.systemsettings ] else throw "`qt.platformTheme` ${cfg.platformTheme} and `qt.style` ${cfg.style} are not compatible."; diff --git a/nixos/modules/hardware/i2c.nix b/nixos/modules/hardware/i2c.nix index c0423cc5d997b..9a5a2e44813ed 100644 --- a/nixos/modules/hardware/i2c.nix +++ b/nixos/modules/hardware/i2c.nix @@ -1,4 +1,4 @@ -{ config, lib, ... }: +{ config, lib, pkgs, ... }: with lib; @@ -31,10 +31,14 @@ in i2c = { }; }; - services.udev.extraRules = '' - # allow group ${cfg.group} and users with a seat use of i2c devices - ACTION=="add", KERNEL=="i2c-[0-9]*", TAG+="uaccess", GROUP="${cfg.group}", MODE="660" - ''; + services.udev.packages = lib.singleton (pkgs.writeTextFile + { name = "i2c-udev-rules"; + text = '' + # allow group ${cfg.group} and users with a seat use of i2c devices + ACTION=="add", KERNEL=="i2c-[0-9]*", TAG+="uaccess", GROUP="${cfg.group}", MODE="660" + ''; + destination = "/etc/udev/rules.d/70-i2c.rules"; + }); }; diff --git a/nixos/modules/installer/tools/nix-fallback-paths.nix b/nixos/modules/installer/tools/nix-fallback-paths.nix index 1058a34133b14..582334a5aeaf5 100644 --- a/nixos/modules/installer/tools/nix-fallback-paths.nix +++ b/nixos/modules/installer/tools/nix-fallback-paths.nix @@ -1,7 +1,7 @@ { - x86_64-linux = "/nix/store/mc43d38fibi94pp5crfwacl5gbslccd0-nix-2.13.3"; - i686-linux = "/nix/store/09m966pj26cgd4ihlg8ihl1106j3vih8-nix-2.13.3"; - aarch64-linux = "/nix/store/7f191d125akld27gc6jl0r13l8pl7x0h-nix-2.13.3"; - x86_64-darwin = "/nix/store/1wn9jkvi2zqfjnjgg7lnp30r2q2y8whd-nix-2.13.3"; - aarch64-darwin = "/nix/store/8w0v2mffa10chrf1h66cbvbpw86qmh85-nix-2.13.3"; + x86_64-linux = "/nix/store/ny9r65799s7xhp605bc2753sjvzkxrrs-nix-2.15.1"; + i686-linux = "/nix/store/ck55dz5klc7szi8rx9ghhm8gi2b5q5bw-nix-2.15.1"; + aarch64-linux = "/nix/store/cl0a02vr28913dgw98hrm45a4baqr3z1-nix-2.15.1"; + x86_64-darwin = "/nix/store/wq228jdbz16pp2lnxf32n8dv27pw53p8-nix-2.15.1"; + aarch64-darwin = "/nix/store/x11cpsjg4q236msfz5scc325pfp9xy64-nix-2.15.1"; } diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix index 10d5edce31516..83b2a45dbd3b1 100644 --- a/nixos/modules/module-list.nix +++ b/nixos/modules/module-list.nix @@ -777,6 +777,7 @@ ./services/monitoring/uptime-kuma.nix ./services/monitoring/uptime.nix ./services/monitoring/vmagent.nix + ./services/monitoring/vmalert.nix ./services/monitoring/vnstat.nix ./services/monitoring/zabbix-agent.nix ./services/monitoring/zabbix-proxy.nix @@ -807,6 +808,7 @@ ./services/network-filesystems/xtreemfs.nix ./services/network-filesystems/yandex-disk.nix ./services/networking/3proxy.nix + ./services/networking/acme-dns.nix ./services/networking/adguardhome.nix ./services/networking/alice-lg.nix ./services/networking/amuled.nix @@ -1008,6 +1010,7 @@ ./services/networking/shorewall.nix ./services/networking/shorewall6.nix ./services/networking/shout.nix + ./services/networking/sitespeed-io.nix ./services/networking/skydns.nix ./services/networking/smartdns.nix ./services/networking/smokeping.nix diff --git a/nixos/modules/programs/nano.nix b/nixos/modules/programs/nano.nix index 16bab620d6e2a..7705bf0ddc72c 100644 --- a/nixos/modules/programs/nano.nix +++ b/nixos/modules/programs/nano.nix @@ -35,8 +35,17 @@ in ###### implementation config = lib.mkIf (cfg.nanorc != "" || cfg.syntaxHighlight) { - environment.etc.nanorc.text = lib.concatStrings [ cfg.nanorc - (lib.optionalString cfg.syntaxHighlight ''${LF}include "${pkgs.nano}/share/nano/*.nanorc"'') ]; + environment.etc.nanorc.text = lib.concatStringsSep LF ( + ( lib.optionals cfg.syntaxHighlight [ + "# The line below is added because value of programs.nano.syntaxHighlight is set to true" + ''include "${pkgs.nano}/share/nano/*.nanorc"'' + "" + ]) + ++ ( lib.optionals (cfg.nanorc != "") [ + "# The lines below have been set from value of programs.nano.nanorc" + cfg.nanorc + ]) + ); }; } diff --git a/nixos/modules/programs/wayland/river.nix b/nixos/modules/programs/wayland/river.nix index 20a786ba3c678..71232a7d2618c 100644 --- a/nixos/modules/programs/wayland/river.nix +++ b/nixos/modules/programs/wayland/river.nix @@ -50,7 +50,7 @@ in { environment.systemPackages = optional (cfg.package != null) cfg.package ++ cfg.extraPackages; # To make a river session available if a display manager like SDDM is enabled: - programs.xwayland.enable = mkDefault true; + services.xserver.displayManager.sessionPackages = optionals (cfg.package != null) [ cfg.package ]; } (import ./wayland-session.nix { inherit lib pkgs; }) ]); diff --git a/nixos/modules/programs/wayland/sway.nix b/nixos/modules/programs/wayland/sway.nix index c699c21bd10b3..698d9c2b46c46 100644 --- a/nixos/modules/programs/wayland/sway.nix +++ b/nixos/modules/programs/wayland/sway.nix @@ -49,7 +49,7 @@ in { description = lib.mdDoc '' Sway package to use. Will override the options 'wrapperFeatures', 'extraSessionCommands', and 'extraOptions'. - Set to <code>null</code> to not add any Sway package to your + Set to `null` to not add any Sway package to your path. This should be done if you want to use the Home Manager Sway module to install Sway. ''; diff --git a/nixos/modules/services/mail/exim.nix b/nixos/modules/services/mail/exim.nix index a9504acee3511..1d1258913b674 100644 --- a/nixos/modules/services/mail/exim.nix +++ b/nixos/modules/services/mail/exim.nix @@ -116,8 +116,8 @@ in wantedBy = [ "multi-user.target" ]; restartTriggers = [ config.environment.etc."exim.conf".source ]; serviceConfig = { - ExecStart = "+${cfg.package}/bin/exim -bdf -q${cfg.queueRunnerInterval}"; - ExecReload = "+${coreutils}/bin/kill -HUP $MAINPID"; + ExecStart = "!${cfg.package}/bin/exim -bdf -q${cfg.queueRunnerInterval}"; + ExecReload = "!${coreutils}/bin/kill -HUP $MAINPID"; User = cfg.user; }; preStart = '' diff --git a/nixos/modules/services/mail/maddy.nix b/nixos/modules/services/mail/maddy.nix index 701d57f18e0c8..3b4a517fb8596 100644 --- a/nixos/modules/services/mail/maddy.nix +++ b/nixos/modules/services/mail/maddy.nix @@ -335,12 +335,13 @@ in { }; secrets = lib.mkOption { - type = lib.types.path; + type = with types; listOf path; description = lib.mdDoc '' - A file containing the various secrets. Should be in the format + A list of files containing the various secrets. Should be in the format expected by systemd's `EnvironmentFile` directory. Secrets can be referenced in the format `{env:VAR}`. ''; + default = [ ]; }; }; @@ -379,7 +380,7 @@ in { User = cfg.user; Group = cfg.group; StateDirectory = [ "maddy" ]; - EnvironmentFile = lib.mkIf (cfg.secrets != null) "${cfg.secrets}"; + EnvironmentFile = cfg.secrets; }; restartTriggers = [ config.environment.etc."maddy/maddy.conf".source ]; wantedBy = [ "multi-user.target" ]; diff --git a/nixos/modules/services/mail/public-inbox.nix b/nixos/modules/services/mail/public-inbox.nix index 9cd6726e6cb2d..099997fa9fe9b 100644 --- a/nixos/modules/services/mail/public-inbox.nix +++ b/nixos/modules/services/mail/public-inbox.nix @@ -275,9 +275,8 @@ in default = {}; description = lib.mdDoc "public inboxes"; type = types.submodule { - # Keeping in line with the tradition of unnecessarily specific types, allow users to set - # freeform settings either globally under the `publicinbox` section, or for specific - # inboxes through additional nesting. + # Support both global options like `services.public-inbox.settings.publicinbox.imapserver` + # and inbox specific options like `services.public-inbox.settings.publicinbox.foo.address`. freeformType = with types; attrsOf (oneOf [ iniAtom (attrsOf iniAtom) ]); options.css = mkOption { @@ -285,12 +284,24 @@ in default = []; description = lib.mdDoc "The local path name of a CSS file for the PSGI web interface."; }; + options.imapserver = mkOption { + type = with types; listOf str; + default = []; + example = [ "imap.public-inbox.org" ]; + description = lib.mdDoc "IMAP URLs to this public-inbox instance"; + }; options.nntpserver = mkOption { type = with types; listOf str; default = []; example = [ "nntp://news.public-inbox.org" "nntps://news.public-inbox.org" ]; description = lib.mdDoc "NNTP URLs to this public-inbox instance"; }; + options.pop3server = mkOption { + type = with types; listOf str; + default = []; + example = [ "pop.public-inbox.org" ]; + description = lib.mdDoc "POP3 URLs to this public-inbox instance"; + }; options.wwwlisting = mkOption { type = with types; enum [ "all" "404" "match=domain" ]; default = "404"; diff --git a/nixos/modules/services/misc/atuin.nix b/nixos/modules/services/misc/atuin.nix index c603042fb306f..202bd4dfca11e 100644 --- a/nixos/modules/services/misc/atuin.nix +++ b/nixos/modules/services/misc/atuin.nix @@ -46,6 +46,13 @@ in description = mdDoc "Open ports in the firewall for the atuin server."; }; + database = { + createLocally = mkOption { + type = types.bool; + default = true; + description = lib.mdDoc "Create the database and database user locally."; + }; + }; }; }; @@ -65,7 +72,8 @@ in systemd.services.atuin = { description = "atuin server"; - after = [ "network.target" "postgresql.service" ]; + requires = lib.optionals cfg.database.createLocally [ "postgresql.service" ]; + after = [ "network.target" ] ++ lib.optionals cfg.database.createLocally [ "postgresql.service" ] ; wantedBy = [ "multi-user.target" ]; serviceConfig = { @@ -80,7 +88,7 @@ in ATUIN_PORT = toString cfg.port; ATUIN_MAX_HISTORY_LENGTH = toString cfg.maxHistoryLength; ATUIN_OPEN_REGISTRATION = boolToString cfg.openRegistration; - ATUIN_DB_URI = "postgresql:///atuin"; + ATUIN_DB_URI = mkIf cfg.database.createLocally "postgresql:///atuin"; ATUIN_PATH = cfg.path; ATUIN_CONFIG_DIR = "/run/atuin"; # required to start, but not used as configuration is via environment variables }; diff --git a/nixos/modules/services/misc/docker-registry.nix b/nixos/modules/services/misc/docker-registry.nix index 98edb413f3c40..8ea81f9a7ee22 100644 --- a/nixos/modules/services/misc/docker-registry.nix +++ b/nixos/modules/services/misc/docker-registry.nix @@ -49,6 +49,14 @@ in { options.services.dockerRegistry = { enable = mkEnableOption (lib.mdDoc "Docker Registry"); + package = mkOption { + type = types.package; + description = mdDoc "Which Docker registry package to use."; + default = pkgs.docker-distribution; + defaultText = literalExpression "pkgs.docker-distribution"; + example = literalExpression "pkgs.gitlab-container-registry"; + }; + listenAddress = mkOption { description = lib.mdDoc "Docker registry host or ip to bind to."; default = "127.0.0.1"; @@ -117,7 +125,7 @@ in { wantedBy = [ "multi-user.target" ]; after = [ "network.target" ]; script = '' - ${pkgs.docker-distribution}/bin/registry serve ${configFile} + ${cfg.package}/bin/registry serve ${configFile} ''; serviceConfig = { @@ -136,7 +144,7 @@ in { serviceConfig.Type = "oneshot"; script = '' - ${pkgs.docker-distribution}/bin/registry garbage-collect ${configFile} + ${cfg.package}/bin/registry garbage-collect ${configFile} /run/current-system/systemd/bin/systemctl restart docker-registry.service ''; diff --git a/nixos/modules/services/misc/gitea.nix b/nixos/modules/services/misc/gitea.nix index 0c414c2466bf4..5c35cfa177a2e 100644 --- a/nixos/modules/services/misc/gitea.nix +++ b/nixos/modules/services/misc/gitea.nix @@ -498,7 +498,8 @@ in systemd.services.gitea = { description = "gitea"; - after = [ "network.target" ] ++ lib.optional usePostgresql "postgresql.service" ++ lib.optional useMysql "mysql.service"; + after = [ "network.target" ] ++ optional usePostgresql "postgresql.service" ++ optional useMysql "mysql.service"; + requires = optional usePostgresql "postgresql.service" ++ optional useMysql "mysql.service"; wantedBy = [ "multi-user.target" ]; path = [ cfg.package pkgs.git pkgs.gnupg ]; diff --git a/nixos/modules/services/misc/gitlab.nix b/nixos/modules/services/misc/gitlab.nix index 12c67c5f5a1e7..9c18a2eed1c69 100644 --- a/nixos/modules/services/misc/gitlab.nix +++ b/nixos/modules/services/misc/gitlab.nix @@ -9,12 +9,10 @@ let toml = pkgs.formats.toml {}; yaml = pkgs.formats.yaml {}; - ruby = cfg.packages.gitlab.ruby; - postgresqlPackage = if config.services.postgresql.enable then config.services.postgresql.package else - pkgs.postgresql_12; + pkgs.postgresql_13; gitlabSocket = "${cfg.statePath}/tmp/sockets/gitlab.socket"; gitalySocket = "${cfg.statePath}/tmp/sockets/gitaly.socket"; @@ -47,9 +45,6 @@ let [git] bin_path = "${pkgs.git}/bin/git" - [gitaly-ruby] - dir = "${cfg.packages.gitaly.ruby}" - [gitlab-shell] dir = "${cfg.packages.gitlab-shell}" @@ -89,6 +84,9 @@ let }; }; + # Redis configuration file + resqueYml = pkgs.writeText "resque.yml" (builtins.toJSON redisConfig); + gitlabConfig = { # These are the default settings from config/gitlab.example.yml production = flip recursiveUpdate cfg.extraConfig { @@ -172,7 +170,6 @@ let SCHEMA = "${cfg.statePath}/db/structure.sql"; GITLAB_UPLOADS_PATH = "${cfg.statePath}/uploads"; GITLAB_LOG_PATH = "${cfg.statePath}/log"; - GITLAB_REDIS_CONFIG_FILE = pkgs.writeText "redis.yml" (builtins.toJSON redisConfig); prometheus_multiproc_dir = "/run/gitlab"; RAILS_ENV = "production"; MALLOC_ARENA_MAX = "2"; @@ -556,6 +553,20 @@ in { default = false; description = lib.mdDoc "Enable GitLab container registry."; }; + package = mkOption { + type = types.package; + default = + if versionAtLeast config.system.stateVersion "23.11" + then pkgs.gitlab-container-registry + else pkgs.docker-distribution; + defaultText = literalExpression "pkgs.docker-distribution"; + description = lib.mdDoc '' + Container registry package to use. + + External container registries such as `pkgs.docker-distribution` are not supported + anymore since GitLab 16.0.0. + ''; + }; host = mkOption { type = types.str; default = config.services.gitlab.host; @@ -1070,6 +1081,13 @@ in { }; config = mkIf cfg.enable { + warnings = [ + (mkIf + (cfg.registry.enable && versionAtLeast (getVersion cfg.packages.gitlab) "16.0.0" && cfg.registry.package == pkgs.docker-distribution) + ''Support for container registries other than gitlab-container-registry has ended since GitLab 16.0.0 and is scheduled for removal in a future release. + Please back up your data and migrate to the gitlab-container-registry package.'' + ) + ]; assertions = [ { @@ -1101,8 +1119,8 @@ in { message = "services.gitlab.secrets.jwsFile must be set!"; } { - assertion = versionAtLeast postgresqlPackage.version "12.0.0"; - message = "PostgreSQL >=12 is required to run GitLab 14. Follow the instructions in the manual section for upgrading PostgreSQL here: https://nixos.org/manual/nixos/stable/index.html#module-services-postgres-upgrading"; + assertion = versionAtLeast postgresqlPackage.version "13.6.0"; + message = "PostgreSQL >=13.6 is required to run GitLab 16. Follow the instructions in the manual section for upgrading PostgreSQL here: https://nixos.org/manual/nixos/stable/index.html#module-services-postgres-upgrading"; } ]; @@ -1213,6 +1231,7 @@ in { services.dockerRegistry = optionalAttrs cfg.registry.enable { enable = true; enableDelete = true; # This must be true, otherwise GitLab won't manage it correctly + package = cfg.registry.package; extraConfig = { auth.token = { realm = "http${optionalString (cfg.https == true) "s"}://${cfg.host}/jwt/auth"; @@ -1315,6 +1334,7 @@ in { cp -rf --no-preserve=mode ${cfg.packages.gitlab}/share/gitlab/db/* ${cfg.statePath}/db ln -sf ${extraGitlabRb} ${cfg.statePath}/config/initializers/extra-gitlab.rb ln -sf ${cableYml} ${cfg.statePath}/config/cable.yml + ln -sf ${resqueYml} ${cfg.statePath}/config/resque.yml ${cfg.packages.gitlab-shell}/bin/install @@ -1462,10 +1482,7 @@ in { partOf = [ "gitlab.target" ]; path = with pkgs; [ openssh - procps # See https://gitlab.com/gitlab-org/gitaly/issues/1562 git - cfg.packages.gitaly.rubyEnv - cfg.packages.gitaly.rubyEnv.wrappedRuby gzip bzip2 ]; diff --git a/nixos/modules/services/misc/nitter.nix b/nixos/modules/services/misc/nitter.nix index d00efe3dd485a..9336dbe38f348 100644 --- a/nixos/modules/services/misc/nitter.nix +++ b/nixos/modules/services/misc/nitter.nix @@ -165,14 +165,14 @@ in enableDebug = mkEnableOption (lib.mdDoc "request logs and debug endpoints"); proxy = mkOption { - type = types.nullOr types.str; - default = null; + type = types.str; + default = ""; description = lib.mdDoc "URL to a HTTP/HTTPS proxy."; }; proxyAuth = mkOption { - type = types.nullOr types.str; - default = null; + type = types.str; + default = ""; description = lib.mdDoc "Credentials for proxy."; }; diff --git a/nixos/modules/services/misc/nix-daemon.nix b/nixos/modules/services/misc/nix-daemon.nix index f37d197f1621d..26dbae344164c 100644 --- a/nixos/modules/services/misc/nix-daemon.nix +++ b/nixos/modules/services/misc/nix-daemon.nix @@ -520,10 +520,17 @@ in will set up automatically for each build. This prevents impurities in builds by disallowing access to dependencies outside of the Nix store by using network and mount namespaces in a chroot environment. + This is enabled by default even though it has a possible performance impact due to the initial setup time of a sandbox for each build. It doesn't affect derivation hashes, so changing this option will not trigger a rebuild of packages. + + When set to "relaxed", this option permits derivations that set + `__noChroot = true;` to run outside of the sandboxed environment. + Exercise caution when using this mode of operation! It is intended to + be a quick hack when building with packages that are not easily setup + to be built reproducibly. ''; }; diff --git a/nixos/modules/services/misc/ntfy-sh.nix b/nixos/modules/services/misc/ntfy-sh.nix index d66b47a2d68ad..3258f91f70440 100644 --- a/nixos/modules/services/misc/ntfy-sh.nix +++ b/nixos/modules/services/misc/ntfy-sh.nix @@ -61,8 +61,17 @@ in services.ntfy-sh.settings = { auth-file = mkDefault "/var/lib/ntfy-sh/user.db"; + listen-http = mkDefault "127.0.0.1:2586"; + attachment-cache-dir = mkDefault "/var/lib/ntfy-sh/attachments"; + cache-file = mkDefault "/var/lib/ntfy-sh/cache-file.db"; }; + systemd.tmpfiles.rules = [ + "f ${cfg.settings.auth-file} 0600 ${cfg.user} ${cfg.group} - -" + "d ${cfg.settings.attachment-cache-dir} 0700 ${cfg.user} ${cfg.group} - -" + "f ${cfg.settings.cache-file} 0600 ${cfg.user} ${cfg.group} - -" + ]; + systemd.services.ntfy-sh = { description = "Push notifications server"; @@ -74,6 +83,7 @@ in User = cfg.user; StateDirectory = "ntfy-sh"; + DynamicUser = true; AmbientCapabilities = "CAP_NET_BIND_SERVICE"; PrivateTmp = true; NoNewPrivileges = true; @@ -88,6 +98,8 @@ in RestrictNamespaces = true; RestrictRealtime = true; MemoryDenyWriteExecute = true; + # Upstream Recommandation + LimitNOFILE = 20500; }; }; diff --git a/nixos/modules/services/monitoring/grafana.nix b/nixos/modules/services/monitoring/grafana.nix index e74ee641db386..adffadf3fc471 100644 --- a/nixos/modules/services/monitoring/grafana.nix +++ b/nixos/modules/services/monitoring/grafana.nix @@ -121,6 +121,11 @@ let default = false; description = lib.mdDoc "Allow users to edit datasources from the UI."; }; + jsonData = mkOption { + type = types.nullOr types.attrs; + default = null; + description = lib.mdDoc "Extra data for datasource plugins."; + }; secureJsonData = mkOption { type = types.nullOr types.attrs; default = null; diff --git a/nixos/modules/services/monitoring/prometheus/exporters.nix b/nixos/modules/services/monitoring/prometheus/exporters.nix index fd40dce1410c1..2352961689343 100644 --- a/nixos/modules/services/monitoring/prometheus/exporters.nix +++ b/nixos/modules/services/monitoring/prometheus/exporters.nix @@ -35,6 +35,7 @@ let "dovecot" "fastly" "fritzbox" + "graphite" "influxdb" "ipmi" "json" diff --git a/nixos/modules/services/monitoring/prometheus/exporters/graphite.nix b/nixos/modules/services/monitoring/prometheus/exporters/graphite.nix new file mode 100644 index 0000000000000..34a8871042126 --- /dev/null +++ b/nixos/modules/services/monitoring/prometheus/exporters/graphite.nix @@ -0,0 +1,41 @@ +{ config, lib, pkgs, options }: + +let + cfg = config.services.prometheus.exporters.graphite; + format = pkgs.formats.yaml { }; +in +{ + port = 9108; + extraOpts = { + graphitePort = lib.mkOption { + type = lib.types.port; + default = 9109; + description = lib.mdDoc '' + Port to use for the graphite server. + ''; + }; + mappingSettings = lib.mkOption { + type = lib.types.submodule { + freeformType = format.type; + options = { }; + }; + default = { }; + description = lib.mdDoc '' + Mapping configuration for the exporter, see + <https://github.com/prometheus/graphite_exporter#yaml-config> for + available options. + ''; + }; + }; + serviceOpts = { + serviceConfig = { + ExecStart = '' + ${pkgs.prometheus-graphite-exporter}/bin/graphite_exporter \ + --web.listen-address ${cfg.listenAddress}:${toString cfg.port} \ + --graphite.listen-address ${cfg.listenAddress}:${toString cfg.graphitePort} \ + --graphite.mapping-config ${format.generate "mapping.yml" cfg.mappingSettings} \ + ${lib.concatStringsSep " \\\n " cfg.extraFlags} + ''; + }; + }; +} diff --git a/nixos/modules/services/monitoring/vmalert.nix b/nixos/modules/services/monitoring/vmalert.nix new file mode 100644 index 0000000000000..27fb34e199b54 --- /dev/null +++ b/nixos/modules/services/monitoring/vmalert.nix @@ -0,0 +1,136 @@ +{ config, pkgs, lib, ... }: with lib; +let + cfg = config.services.vmalert; + + format = pkgs.formats.yaml {}; + + confOpts = concatStringsSep " \\\n" (mapAttrsToList mkLine (filterAttrs (_: v: v != false) cfg.settings)); + confType = with types; + let + valueType = oneOf [ bool int path str ]; + in + attrsOf (either valueType (listOf valueType)); + + mkLine = key: value: + if value == true then "-${key}" + else if isList value then concatMapStringsSep " " (v: "-${key}=${escapeShellArg (toString v)}") value + else "-${key}=${escapeShellArg (toString value)}" + ; +in +{ + # interface + options.services.vmalert = { + enable = mkEnableOption (mdDoc "vmalert"); + + package = mkOption { + type = types.package; + default = pkgs.victoriametrics; + defaultText = "pkgs.victoriametrics"; + description = mdDoc '' + The VictoriaMetrics derivation to use. + ''; + }; + + settings = mkOption { + type = types.submodule { + freeformType = confType; + options = { + + "datasource.url" = mkOption { + type = types.nonEmptyStr; + example = "http://localhost:8428"; + description = mdDoc '' + Datasource compatible with Prometheus HTTP API. + ''; + }; + + "notifier.url" = mkOption { + type = with types; listOf nonEmptyStr; + default = []; + example = [ "http://127.0.0.1:9093" ]; + description = mdDoc '' + Prometheus Alertmanager URL. List all Alertmanager URLs if it runs in the cluster mode to ensure high availability. + ''; + }; + + "rule" = mkOption { + type = with types; listOf path; + description = mdDoc '' + Path to the files with alerting and/or recording rules. + + ::: {.note} + Consider using the {option}`services.vmalert.rules` option as a convenient alternative for declaring rules + directly in the `nix` language. + ::: + ''; + }; + + }; + }; + default = { }; + example = { + "datasource.url" = "http://localhost:8428"; + "datasource.disableKeepAlive" = true; + "datasource.showURL" = false; + "rule" = [ + "http://<some-server-addr>/path/to/rules" + "dir/*.yaml" + ]; + }; + description = mdDoc '' + `vmalert` configuration, passed via command line flags. Refer to + <https://github.com/VictoriaMetrics/VictoriaMetrics/blob/master/app/vmalert/README.md#configuration> + for details on supported values. + ''; + }; + + rules = mkOption { + type = format.type; + default = {}; + example = { + group = [ + { name = "TestGroup"; + rules = [ + { alert = "ExampleAlertAlwaysFiring"; + expr = '' + sum by(job) + (up == 1) + ''; + } + ]; + } + ]; + }; + description = mdDoc '' + A list of the given alerting or recording rules against configured `"datasource.url"` compatible with + Prometheus HTTP API for `vmalert` to execute. Refer to + <https://github.com/VictoriaMetrics/VictoriaMetrics/blob/master/app/vmalert/README.md#rules> + for details on supported values. + ''; + }; + }; + + # implementation + config = mkIf cfg.enable { + + environment.etc."vmalert/rules.yml".source = format.generate "rules.yml" cfg.rules; + + services.vmalert.settings.rule = [ + "/etc/vmalert/rules.yml" + ]; + + systemd.services.vmalert = { + description = "vmalert service"; + wantedBy = [ "multi-user.target" ]; + after = [ "network.target" ]; + reloadTriggers = [ config.environment.etc."vmalert/rules.yml".source ]; + + serviceConfig = { + DynamicUser = true; + Restart = "on-failure"; + ExecStart = "${cfg.package}/bin/vmalert ${confOpts}"; + ExecReload = ''${pkgs.coreutils}/bin/kill -SIGHUP "$MAINPID"''; + }; + }; + }; +} diff --git a/nixos/modules/services/networking/acme-dns.nix b/nixos/modules/services/networking/acme-dns.nix new file mode 100644 index 0000000000000..5c53fa2cc4f15 --- /dev/null +++ b/nixos/modules/services/networking/acme-dns.nix @@ -0,0 +1,154 @@ +{ lib +, config +, pkgs +, ... +}: + +let + cfg = config.services.acme-dns; + format = pkgs.formats.toml { }; + inherit (lib) + literalExpression + mdDoc + mkEnableOption + mkOption + mkPackageOptionMD + types + ; + domain = "acme-dns.example.com"; +in +{ + options.services.acme-dns = { + enable = mkEnableOption (mdDoc "acme-dns"); + + package = mkPackageOptionMD pkgs "acme-dns" { }; + + settings = mkOption { + description = mdDoc '' + Free-form settings written directly to the `acme-dns.cfg` file. + Refer to <https://github.com/joohoi/acme-dns/blob/master/README.md#configuration> for supported values. + ''; + + default = { }; + + type = types.submodule { + freeformType = format.type; + options = { + general = { + listen = mkOption { + type = types.str; + description = mdDoc "IP+port combination to bind and serve the DNS server on."; + default = "[::]:53"; + example = "127.0.0.1:53"; + }; + + protocol = mkOption { + type = types.enum [ "both" "both4" "both6" "udp" "udp4" "udp6" "tcp" "tcp4" "tcp6" ]; + description = mdDoc "Protocols to serve DNS responses on."; + default = "both"; + }; + + domain = mkOption { + type = types.str; + description = mdDoc "Domain name to serve the requests off of."; + example = domain; + }; + + nsname = mkOption { + type = types.str; + description = mdDoc "Zone name server."; + example = domain; + }; + + nsadmin = mkOption { + type = types.str; + description = mdDoc "Zone admin email address for `SOA`."; + example = "admin.example.com"; + }; + + records = mkOption { + type = types.listOf types.str; + description = mdDoc "Predefined DNS records served in addition to the `_acme-challenge` TXT records."; + example = literalExpression '' + [ + # replace with your acme-dns server's public IPv4 + "${domain}. A 198.51.100.1" + # replace with your acme-dns server's public IPv6 + "${domain}. AAAA 2001:db8::1" + # ${domain} should resolve any *.${domain} records + "${domain}. NS ${domain}." + ] + ''; + }; + }; + + database = { + engine = mkOption { + type = types.enum [ "sqlite3" "postgres" ]; + description = mdDoc "Database engine to use."; + default = "sqlite3"; + }; + connection = mkOption { + type = types.str; + description = mdDoc "Database connection string."; + example = "postgres://user:password@localhost/acmedns"; + default = "/var/lib/acme-dns/acme-dns.db"; + }; + }; + + api = { + ip = mkOption { + type = types.str; + description = mdDoc "IP to bind the HTTP API on."; + default = "[::]"; + example = "127.0.0.1"; + }; + + port = mkOption { + type = types.port; + description = mdDoc "Listen port for the HTTP API."; + default = 8080; + # acme-dns expects this value to be a string + apply = toString; + }; + + disable_registration = mkOption { + type = types.bool; + description = mdDoc "Whether to disable the HTTP registration endpoint."; + default = false; + example = true; + }; + + tls = mkOption { + type = types.enum [ "letsencrypt" "letsencryptstaging" "cert" "none" ]; + description = mdDoc "TLS backend to use."; + default = "none"; + }; + }; + + + logconfig = { + loglevel = mkOption { + type = types.enum [ "error" "warning" "info" "debug" ]; + description = mdDoc "Level to log on."; + default = "info"; + }; + }; + }; + }; + }; + }; + + config = lib.mkIf cfg.enable { + systemd.packages = [ cfg.package ]; + systemd.services.acme-dns = { + wantedBy = [ "multi-user.target" ]; + serviceConfig = { + ExecStart = [ "" "${lib.getExe cfg.package} -c ${format.generate "acme-dns.toml" cfg.settings}" ]; + StateDirectory = "acme-dns"; + WorkingDirectory = "%S/acme-dns"; + DynamicUser = true; + }; + }; + }; +} diff --git a/nixos/modules/services/networking/murmur.nix b/nixos/modules/services/networking/murmur.nix index 9ec4f57ca43ed..ebade7aa8e403 100644 --- a/nixos/modules/services/networking/murmur.nix +++ b/nixos/modules/services/networking/murmur.nix @@ -313,7 +313,7 @@ in systemd.services.murmur = { description = "Murmur Chat Service"; wantedBy = [ "multi-user.target" ]; - after = [ "network-online.target" ]; + after = [ "network.target" ]; preStart = '' ${pkgs.envsubst}/bin/envsubst \ -o /run/murmur/murmurd.ini \ diff --git a/nixos/modules/services/networking/sitespeed-io.nix b/nixos/modules/services/networking/sitespeed-io.nix new file mode 100644 index 0000000000000..f7eab0bb19d77 --- /dev/null +++ b/nixos/modules/services/networking/sitespeed-io.nix @@ -0,0 +1,122 @@ +{ lib, config, pkgs, ... }: +let + cfg = config.services.sitespeed-io; + format = pkgs.formats.json { }; +in +{ + options.services.sitespeed-io = { + enable = lib.mkEnableOption (lib.mdDoc "Sitespeed.io"); + + user = lib.mkOption { + type = lib.types.str; + default = "sitespeed-io"; + description = lib.mdDoc "User account under which sitespeed-io runs."; + }; + + package = lib.mkOption { + type = lib.types.package; + default = pkgs.sitespeed-io; + defaultText = "pkgs.sitespeed-io"; + description = lib.mdDoc "Sitespeed.io package to use."; + }; + + dataDir = lib.mkOption { + default = "/var/lib/sitespeed-io"; + type = lib.types.str; + description = lib.mdDoc "The base sitespeed-io data directory."; + }; + + period = lib.mkOption { + type = lib.types.str; + default = "hourly"; + description = lib.mdDoc '' + Systemd calendar expression when to run. See {manpage}`systemd.time(7)`. + ''; + }; + + runs = lib.mkOption { + default = [ ]; + description = lib.mdDoc '' + A list of run configurations. The service will call sitespeed-io once + for every run listed here. This lets you examine different websites + with different sitespeed-io settings. + ''; + type = lib.types.listOf (lib.types.submodule { + options = { + urls = lib.mkOption { + type = with lib.types; listOf str; + default = []; + description = lib.mdDoc '' + URLs the service should monitor. + ''; + }; + + settings = lib.mkOption { + type = lib.types.submodule { + freeformType = format.type; + options = { }; + }; + default = { }; + description = lib.mdDoc '' + Configuration for sitespeed-io, see + <https://www.sitespeed.io/documentation/sitespeed.io/configuration/> + for available options. The value here will be directly transformed to + JSON and passed as `--config` to the program. + ''; + }; + + extraArgs = lib.mkOption { + type = with lib.types; listOf str; + default = []; + description = lib.mdDoc '' + Extra command line arguments to pass to the program. + ''; + }; + }; + }); + }; + }; + + config = lib.mkIf cfg.enable { + assertions = [ + { + assertion = cfg.runs != []; + message = "At least one run must be configured."; + } + { + assertion = lib.all (run: run.urls != []) cfg.runs; + message = "All runs must have at least one url configured."; + } + ]; + + systemd.services.sitespeed-io = { + description = "Check website status"; + startAt = cfg.period; + serviceConfig = { + WorkingDirectory = cfg.dataDir; + User = cfg.user; + }; + preStart = "chmod u+w -R ${cfg.dataDir}"; # Make sure things are writable + script = (lib.concatMapStrings (run: '' + ${lib.getExe cfg.package} \ + --config ${format.generate "sitespeed.json" run.settings} \ + ${lib.escapeShellArgs run.extraArgs} \ + ${builtins.toFile "urls.txt" (lib.concatLines run.urls)} & + '') cfg.runs) + + '' + wait + ''; + }; + + users = { + extraUsers.${cfg.user} = { + isSystemUser = true; + group = cfg.user; + home = cfg.dataDir; + createHome = true; + homeMode = "755"; + }; + extraGroups.${cfg.user} = { }; + }; + }; +} diff --git a/nixos/modules/services/networking/smokeping.nix b/nixos/modules/services/networking/smokeping.nix index 19ab3f1aa48c0..c7aec7d9489f9 100644 --- a/nixos/modules/services/networking/smokeping.nix +++ b/nixos/modules/services/networking/smokeping.nix @@ -8,36 +8,36 @@ let smokepingPidDir = "/run"; configFile = if cfg.config == null - then - '' - *** General *** - cgiurl = ${cfg.cgiUrl} - contact = ${cfg.ownerEmail} - datadir = ${smokepingHome}/data - imgcache = ${smokepingHome}/cache - imgurl = ${cfg.imgUrl} - linkstyle = ${cfg.linkStyle} - ${lib.optionalString (cfg.mailHost != "") "mailhost = ${cfg.mailHost}"} - owner = ${cfg.owner} - pagedir = ${smokepingHome}/cache - piddir = ${smokepingPidDir} - ${lib.optionalString (cfg.sendmail != null) "sendmail = ${cfg.sendmail}"} - smokemail = ${cfg.smokeMailTemplate} - *** Presentation *** - template = ${cfg.presentationTemplate} - ${cfg.presentationConfig} - *** Alerts *** - ${cfg.alertConfig} - *** Database *** - ${cfg.databaseConfig} - *** Probes *** - ${cfg.probeConfig} - *** Targets *** - ${cfg.targetConfig} - ${cfg.extraConfig} - '' - else - cfg.config; + then + '' + *** General *** + cgiurl = ${cfg.cgiUrl} + contact = ${cfg.ownerEmail} + datadir = ${smokepingHome}/data + imgcache = ${smokepingHome}/cache + imgurl = ${cfg.imgUrl} + linkstyle = ${cfg.linkStyle} + ${lib.optionalString (cfg.mailHost != "") "mailhost = ${cfg.mailHost}"} + owner = ${cfg.owner} + pagedir = ${smokepingHome}/cache + piddir = ${smokepingPidDir} + ${lib.optionalString (cfg.sendmail != null) "sendmail = ${cfg.sendmail}"} + smokemail = ${cfg.smokeMailTemplate} + *** Presentation *** + template = ${cfg.presentationTemplate} + ${cfg.presentationConfig} + *** Alerts *** + ${cfg.alertConfig} + *** Database *** + ${cfg.databaseConfig} + *** Probes *** + ${cfg.probeConfig} + *** Targets *** + ${cfg.targetConfig} + ${cfg.extraConfig} + '' + else + cfg.config; configPath = pkgs.writeText "smokeping.conf" configFile; cgiHome = pkgs.writeScript "smokeping.fcgi" '' @@ -141,7 +141,7 @@ in ''; }; linkStyle = mkOption { - type = types.enum ["original" "absolute" "relative"]; + type = types.enum [ "original" "absolute" "relative" ]; default = "relative"; example = "absolute"; description = lib.mdDoc "DNS name for the urls generated in the cgi."; @@ -301,7 +301,8 @@ in ]; security.wrappers = { fping = - { setuid = true; + { + setuid = true; owner = "root"; group = "root"; source = "${pkgs.fping}/bin/fping"; @@ -339,16 +340,16 @@ in }; preStart = '' mkdir -m 0755 -p ${smokepingHome}/cache ${smokepingHome}/data - ln -sf ${cfg.package}/htdocs/css ${smokepingHome}/css - ln -sf ${cfg.package}/htdocs/js ${smokepingHome}/js - ln -sf ${cgiHome} ${smokepingHome}/smokeping.fcgi + ln -snf ${cfg.package}/htdocs/css ${smokepingHome}/css + ln -snf ${cfg.package}/htdocs/js ${smokepingHome}/js + ln -snf ${cgiHome} ${smokepingHome}/smokeping.fcgi ${cfg.package}/bin/smokeping --check --config=${configPath} ${cfg.package}/bin/smokeping --static --config=${configPath} ''; }; systemd.services.thttpd = mkIf cfg.webService { - requiredBy = [ "multi-user.target"]; - requires = [ "smokeping.service"]; + requiredBy = [ "multi-user.target" ]; + requires = [ "smokeping.service" ]; path = with pkgs; [ bash rrdtool smokeping thttpd ]; serviceConfig = { Restart = "always"; diff --git a/nixos/modules/services/networking/ssh/sshd.nix b/nixos/modules/services/networking/ssh/sshd.nix index a0904f59a72e5..70dde79a198d0 100644 --- a/nixos/modules/services/networking/ssh/sshd.nix +++ b/nixos/modules/services/networking/ssh/sshd.nix @@ -570,14 +570,26 @@ in assertions = [{ assertion = if cfg.settings.X11Forwarding then cfgc.setXAuthLocation else true; message = "cannot enable X11 forwarding without setting xauth location";} - { assertion = lib.lists.unique (map (x: lib.strings.toLower x) (attrNames cfg.settings)) - == (map (x: lib.strings.toLower x) (attrNames cfg.settings)); - message = "Duplicate sshd config key; does your capitalization match the option's?"; } ] + (let + duplicates = + # Filter out the groups with more than 1 element + lib.filter (l: lib.length l > 1) ( + # Grab the groups, we don't care about the group identifiers + lib.attrValues ( + # Group the settings that are the same in lower case + lib.groupBy lib.strings.toLower (attrNames cfg.settings) + ) + ); + formattedDuplicates = lib.concatMapStringsSep ", " (dupl: "(${lib.concatStringsSep ", " dupl})") duplicates; + in + { + assertion = lib.length duplicates == 0; + message = ''Duplicate sshd config key; does your capitalization match the option's? Duplicate keys: ${formattedDuplicates}''; + })] ++ forEach cfg.listenAddresses ({ addr, ... }: { assertion = addr != null; message = "addr must be specified in each listenAddresses entry"; }); - }; } diff --git a/nixos/modules/services/system/self-deploy.nix b/nixos/modules/services/system/self-deploy.nix index 5f9ee06124cb4..b5d8ea3f56e79 100644 --- a/nixos/modules/services/system/self-deploy.nix +++ b/nixos/modules/services/system/self-deploy.nix @@ -125,13 +125,15 @@ in }; config = lib.mkIf cfg.enable { - systemd.services.self-deploy = { + systemd.services.self-deploy = rec { inherit (cfg) startAt; - wantedBy = [ "multi-user.target" ]; + serviceConfig.Type = "oneshot"; requires = lib.mkIf (!(isPathType cfg.repository)) [ "network-online.target" ]; + after = requires; + environment.GIT_SSH_COMMAND = lib.mkIf (cfg.sshKeyFile != null) "${pkgs.openssh}/bin/ssh -i ${lib.escapeShellArg cfg.sshKeyFile}"; diff --git a/nixos/modules/services/web-apps/code-server.nix b/nixos/modules/services/web-apps/code-server.nix index 24e34e0c58338..fa7d4a348c232 100644 --- a/nixos/modules/services/web-apps/code-server.nix +++ b/nixos/modules/services/web-apps/code-server.nix @@ -1,107 +1,199 @@ { config, lib, pkgs, ... }: -with lib; let - cfg = config.services.code-server; defaultUser = "code-server"; defaultGroup = defaultUser; - in { - ###### interface options = { services.code-server = { - enable = mkEnableOption (lib.mdDoc "code-server"); + enable = lib.mkEnableOption (lib.mdDoc "code-server"); - package = mkOption { - default = pkgs.code-server; - defaultText = lib.literalExpression "pkgs.code-server"; - description = lib.mdDoc "Which code-server derivation to use."; - type = types.package; - }; + package = lib.mkPackageOptionMD pkgs "code-server" { }; - extraPackages = mkOption { + extraPackages = lib.mkOption { default = [ ]; - description = lib.mdDoc "Packages that are available in the PATH of code-server."; - example = "[ pkgs.go ]"; - type = types.listOf types.package; + description = lib.mdDoc '' + Additional packages to add to the code-server {env}`PATH`. + ''; + example = lib.literalExpression "[ pkgs.go ]"; + type = lib.types.listOf lib.types.package; }; - extraEnvironment = mkOption { - type = types.attrsOf types.str; - description = - lib.mdDoc "Additional environment variables to passed to code-server."; + extraEnvironment = lib.mkOption { + type = lib.types.attrsOf lib.types.str; + description = lib.mdDoc '' + Additional environment variables to pass to code-server. + ''; default = { }; example = { PKG_CONFIG_PATH = "/run/current-system/sw/lib/pkgconfig"; }; }; - extraArguments = mkOption { - default = [ "--disable-telemetry" ]; - description = lib.mdDoc "Additional arguments that passed to code-server"; - example = ''[ "--verbose" ]''; - type = types.listOf types.str; + extraArguments = lib.mkOption { + default = [ ]; + description = lib.mdDoc '' + Additional arguments to pass to code-server. + ''; + example = lib.literalExpression ''[ "--log=info" ]''; + type = lib.types.listOf lib.types.str; }; - host = mkOption { - default = "127.0.0.1"; - description = lib.mdDoc "The host-ip to bind to."; - type = types.str; + host = lib.mkOption { + default = "localhost"; + description = lib.mdDoc '' + The host name or IP address the server should listen to. + ''; + type = lib.types.str; }; - port = mkOption { + port = lib.mkOption { default = 4444; - description = lib.mdDoc "The port where code-server runs."; - type = types.port; + description = lib.mdDoc '' + The port the server should listen to. + ''; + type = lib.types.port; }; - auth = mkOption { + auth = lib.mkOption { default = "password"; - description = lib.mdDoc "The type of authentication to use."; - type = types.enum [ "none" "password" ]; + description = lib.mdDoc '' + The type of authentication to use. + ''; + type = lib.types.enum [ "none" "password" ]; }; - hashedPassword = mkOption { + hashedPassword = lib.mkOption { default = ""; - description = - lib.mdDoc "Create the password with: `echo -n 'thisismypassword' | npx argon2-cli -e`."; - type = types.str; + description = lib.mdDoc '' + Create the password with: `echo -n 'thisismypassword' | npx argon2-cli -e`. + ''; + type = lib.types.str; }; - user = mkOption { + user = lib.mkOption { default = defaultUser; example = "yourUser"; description = lib.mdDoc '' The user to run code-server as. By default, a user named `${defaultUser}` will be created. ''; - type = types.str; + type = lib.types.str; }; - group = mkOption { + group = lib.mkOption { default = defaultGroup; example = "yourGroup"; description = lib.mdDoc '' The group to run code-server under. By default, a group named `${defaultGroup}` will be created. ''; - type = types.str; + type = lib.types.str; }; - extraGroups = mkOption { + extraGroups = lib.mkOption { default = [ ]; - description = - lib.mdDoc "An array of additional groups for the `${defaultUser}` user."; + description = lib.mdDoc '' + An array of additional groups for the `${defaultUser}` user. + ''; example = [ "docker" ]; - type = types.listOf types.str; + type = lib.types.listOf lib.types.str; + }; + + socket = lib.mkOption { + default = null; + example = "/run/code-server/socket"; + description = lib.mdDoc '' + Path to a socket (bind-addr will be ignored). + ''; + type = lib.types.nullOr lib.types.str; + }; + + socketMode = lib.mkOption { + default = null; + description = lib.mdDoc '' + File mode of the socket. + ''; + type = lib.types.nullOr lib.types.str; + }; + + userDataDir = lib.mkOption { + default = null; + description = lib.mdDoc '' + Path to the user data directory. + ''; + type = lib.types.nullOr lib.types.str; + }; + + extensionsDir = lib.mkOption { + default = null; + description = lib.mdDoc '' + Path to the extensions directory. + ''; + type = lib.types.nullOr lib.types.str; + }; + + proxyDomain = lib.mkOption { + default = null; + example = "code-server.lan"; + description = lib.mdDoc '' + Domain used for proxying ports. + ''; + type = lib.types.nullOr lib.types.str; + }; + + disableTelemetry = lib.mkOption { + default = false; + example = true; + description = lib.mdDoc '' + Disable telemetry. + ''; + type = lib.types.bool; + }; + + disableUpdateCheck = lib.mkOption { + default = false; + example = true; + description = lib.mdDoc '' + Disable update check. + Without this flag, code-server checks every 6 hours against the latest github release and + then notifies you once every week that a new release is available. + ''; + type = lib.types.bool; + }; + + disableFileDownloads = lib.mkOption { + default = false; + example = true; + description = lib.mdDoc '' + Disable file downloads from Code. + ''; + type = lib.types.bool; + }; + + disableWorkspaceTrust = lib.mkOption { + default = false; + example = true; + description = lib.mdDoc '' + Disable Workspace Trust feature. + ''; + type = lib.types.bool; + }; + + disableGettingStartedOverride = lib.mkOption { + default = false; + example = true; + description = lib.mdDoc '' + Disable the coder/coder override in the Help: Getting Started page. + ''; + type = lib.types.bool; }; }; }; - ###### implementation - config = mkIf cfg.enable { + config = lib.mkIf cfg.enable { systemd.services.code-server = { - description = "VSCode server"; + description = "Code server"; wantedBy = [ "multi-user.target" ]; after = [ "network-online.target" ]; path = cfg.extraPackages; @@ -109,18 +201,37 @@ in { HASHED_PASSWORD = cfg.hashedPassword; } // cfg.extraEnvironment; serviceConfig = { - ExecStart = "${cfg.package}/bin/code-server --bind-addr ${cfg.host}:${toString cfg.port} --auth ${cfg.auth} " + lib.escapeShellArgs cfg.extraArguments; + ExecStart = '' + ${lib.getExe cfg.package} \ + --auth=${cfg.auth} \ + --bind-addr=${cfg.host}:${toString cfg.port} \ + '' + lib.optionalString (cfg.socket != null) '' + --socket=${cfg.socket} \ + '' + lib.optionalString (cfg.userDataDir != null) '' + --user-data-dir=${cfg.userDataDir} \ + '' + lib.optionalString (cfg.extensionsDir != null) '' + --extensions-dir=${cfg.extensionsDir} \ + '' + lib.optionalString (cfg.disableTelemetry == true) '' + --disable-telemetry \ + '' + lib.optionalString (cfg.disableUpdateCheck == true) '' + --disable-update-check \ + '' + lib.optionalString (cfg.disableFileDownloads == true) '' + --disable-file-downloads \ + '' + lib.optionalString (cfg.disableWorkspaceTrust == true) '' + --disable-workspace-trust \ + '' + lib.optionalString (cfg.disableGettingStartedOverride == true) '' + --disable-getting-started-override \ + '' + lib.escapeShellArgs cfg.extraArguments; ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID"; RuntimeDirectory = cfg.user; User = cfg.user; Group = cfg.group; Restart = "on-failure"; }; - }; - users.users."${cfg.user}" = mkMerge [ - (mkIf (cfg.user == defaultUser) { + users.users."${cfg.user}" = lib.mkMerge [ + (lib.mkIf (cfg.user == defaultUser) { isNormalUser = true; description = "code-server user"; inherit (cfg) group; @@ -131,9 +242,8 @@ in { } ]; - users.groups."${defaultGroup}" = mkIf (cfg.group == defaultGroup) { }; - + users.groups."${defaultGroup}" = lib.mkIf (cfg.group == defaultGroup) { }; }; - meta.maintainers = with maintainers; [ stackshadow ]; + meta.maintainers = [ lib.maintainers.stackshadow ]; } diff --git a/nixos/modules/services/web-apps/hedgedoc.nix b/nixos/modules/services/web-apps/hedgedoc.nix index a7823354ce889..e2014a9b7e351 100644 --- a/nixos/modules/services/web-apps/hedgedoc.nix +++ b/nixos/modules/services/web-apps/hedgedoc.nix @@ -624,7 +624,8 @@ in ''; }; clientSecret = mkOption { - type = types.str; + type = with types; nullOr str; + default = null; description = lib.mdDoc '' Specify the OAuth client secret. ''; diff --git a/nixos/modules/services/web-apps/pixelfed.nix b/nixos/modules/services/web-apps/pixelfed.nix index 58ac307fd1ed1..430a368650ec1 100644 --- a/nixos/modules/services/web-apps/pixelfed.nix +++ b/nixos/modules/services/web-apps/pixelfed.nix @@ -448,7 +448,7 @@ in { cfg.nginx { root = lib.mkForce "${pixelfed}/public/"; - locations."/".tryFiles = "$uri $uri/ /index.php?query_string"; + locations."/".tryFiles = "$uri $uri/ /index.php?$query_string"; locations."/favicon.ico".extraConfig = '' access_log off; log_not_found off; ''; diff --git a/nixos/modules/services/web-servers/garage.nix b/nixos/modules/services/web-servers/garage.nix index ebd41473939a5..8b5734b5a2ced 100644 --- a/nixos/modules/services/web-servers/garage.nix +++ b/nixos/modules/services/web-servers/garage.nix @@ -49,7 +49,7 @@ in replication_mode = mkOption { default = "none"; - type = types.enum ([ "none" "1" "2" "3" 1 2 3 ]); + type = types.enum ([ "none" "1" "2" "3" "2-dangerous" "3-dangerous" "3-degraded" 1 2 3 ]); apply = v: toString v; description = lib.mdDoc "Garage replication mode, defaults to none, see: <https://garagehq.deuxfleurs.fr/documentation/reference-manual/configuration/#replication-mode> for reference."; }; @@ -80,6 +80,7 @@ in after = [ "network.target" "network-online.target" ]; wants = [ "network.target" "network-online.target" ]; wantedBy = [ "multi-user.target" ]; + restartTriggers = [ configFile ]; serviceConfig = { ExecStart = "${cfg.package}/bin/garage server"; diff --git a/nixos/modules/services/web-servers/nginx/default.nix b/nixos/modules/services/web-servers/nginx/default.nix index 12ccba1647382..e87159ba99c77 100644 --- a/nixos/modules/services/web-servers/nginx/default.nix +++ b/nixos/modules/services/web-servers/nginx/default.nix @@ -713,7 +713,7 @@ in Configuration lines appended to the generated Nginx configuration file. Commonly used by different modules providing http snippets. {option}`appendConfig` - can be specified more than once and it's value will be + can be specified more than once and its value will be concatenated (contrary to {option}`config` which can be set only once). ''; diff --git a/nixos/modules/services/web-servers/traefik.nix b/nixos/modules/services/web-servers/traefik.nix index 9e5603e0edc33..42fb95a52200d 100644 --- a/nixos/modules/services/web-servers/traefik.nix +++ b/nixos/modules/services/web-servers/traefik.nix @@ -48,6 +48,11 @@ let '' else cfg.staticConfigFile; + + finalStaticConfigFile = + if cfg.environmentFiles == [] + then staticConfigFile + else "/run/traefik/config.toml"; in { options.services.traefik = { enable = mkEnableOption (lib.mdDoc "Traefik web server"); @@ -127,6 +132,16 @@ in { type = types.package; description = lib.mdDoc "Traefik package to use."; }; + + environmentFiles = mkOption { + default = []; + type = types.listOf types.path; + example = [ "/run/secrets/traefik.env" ]; + description = lib.mdDoc '' + Files to load as environment file. Environment variables from this file + will be substituted into the static configuration file using envsubst. + ''; + }; }; config = mkIf cfg.enable { @@ -139,8 +154,13 @@ in { startLimitIntervalSec = 86400; startLimitBurst = 5; serviceConfig = { - ExecStart = - "${cfg.package}/bin/traefik --configfile=${staticConfigFile}"; + EnvironmentFile = cfg.environmentFiles; + ExecStartPre = lib.optional (cfg.environmentFiles != []) + (pkgs.writeShellScript "pre-start" '' + umask 077 + ${pkgs.envsubst}/bin/envsubst -i "${staticConfigFile}" > "${finalStaticConfigFile}" + ''); + ExecStart = "${cfg.package}/bin/traefik --configfile=${finalStaticConfigFile}"; Type = "simple"; User = "traefik"; Group = cfg.group; @@ -155,6 +175,7 @@ in { ProtectHome = true; ProtectSystem = "full"; ReadWriteDirectories = cfg.dataDir; + RuntimeDirectory = "traefik"; }; }; diff --git a/nixos/modules/services/x11/desktop-managers/cinnamon.nix b/nixos/modules/services/x11/desktop-managers/cinnamon.nix index 9adbcec7f2f06..7ced5b63c839e 100644 --- a/nixos/modules/services/x11/desktop-managers/cinnamon.nix +++ b/nixos/modules/services/x11/desktop-managers/cinnamon.nix @@ -70,9 +70,9 @@ in name = mkDefault "Mint-Y-Aqua"; package = mkDefault pkgs.cinnamon.mint-themes; }; - iconTheme = mkIf (notExcluded pkgs.cinnamon.mint-x-icons) { + iconTheme = mkIf (notExcluded pkgs.cinnamon.mint-y-icons) { name = mkDefault "Mint-Y-Aqua"; - package = mkDefault pkgs.cinnamon.mint-x-icons; + package = mkDefault pkgs.cinnamon.mint-y-icons; }; cursorTheme = mkIf (notExcluded pkgs.cinnamon.mint-cursor-themes) { name = mkDefault "Bibata-Modern-Classic"; diff --git a/nixos/modules/services/x11/desktop-managers/pantheon.nix b/nixos/modules/services/x11/desktop-managers/pantheon.nix index ab4d75b10134c..c61c53642f4b0 100644 --- a/nixos/modules/services/x11/desktop-managers/pantheon.nix +++ b/nixos/modules/services/x11/desktop-managers/pantheon.nix @@ -227,11 +227,16 @@ in xdg.icons.enable = true; xdg.portal.enable = true; - xdg.portal.extraPortals = with pkgs.pantheon; [ + xdg.portal.extraPortals = [ + # Some Pantheon apps enforce portal usage, we need this for e.g. notifications. + # Currently we have buildPortalsInGnome enabled, if you run into issues related + # to https://github.com/flatpak/xdg-desktop-portal/issues/656 please report to us. + pkgs.xdg-desktop-portal-gtk + ] ++ (with pkgs.pantheon; [ elementary-files elementary-settings-daemon xdg-desktop-portal-pantheon - ]; + ]); # Override GSettings schemas environment.sessionVariables.NIX_GSETTINGS_OVERRIDES_DIR = "${nixos-gsettings-desktop-schemas}/share/gsettings-schemas/nixos-gsettings-overrides/glib-2.0/schemas"; diff --git a/nixos/modules/services/x11/display-managers/account-service-util.nix b/nixos/modules/services/x11/display-managers/account-service-util.nix index 861976d1186f7..00ffd91cb2f6d 100644 --- a/nixos/modules/services/x11/display-managers/account-service-util.nix +++ b/nixos/modules/services/x11/display-managers/account-service-util.nix @@ -2,7 +2,7 @@ , glib , gobject-introspection , python3 -, wrapGAppsHook +, wrapGAppsNoGuiHook , lib }: @@ -18,7 +18,7 @@ python3.pkgs.buildPythonApplication { strictDeps = false; nativeBuildInputs = [ - wrapGAppsHook + wrapGAppsNoGuiHook gobject-introspection ]; diff --git a/nixos/modules/services/x11/window-managers/default.nix b/nixos/modules/services/x11/window-managers/default.nix index 48b413beaa865..ce1d4115f225a 100644 --- a/nixos/modules/services/x11/window-managers/default.nix +++ b/nixos/modules/services/x11/window-managers/default.nix @@ -14,6 +14,7 @@ in ./bspwm.nix ./cwm.nix ./clfswm.nix + ./dk.nix ./dwm.nix ./e16.nix ./evilwm.nix diff --git a/nixos/modules/services/x11/window-managers/dk.nix b/nixos/modules/services/x11/window-managers/dk.nix new file mode 100644 index 0000000000000..152c7bc8117bf --- /dev/null +++ b/nixos/modules/services/x11/window-managers/dk.nix @@ -0,0 +1,27 @@ +{ config, lib, pkgs, ... }: + +let + cfg = config.services.xserver.windowManager.dk; +in + +{ + options = { + services.xserver.windowManager.dk = { + enable = lib.mkEnableOption (lib.mdDoc "dk"); + + package = lib.mkPackageOptionMD pkgs "dk" { }; + }; + }; + + config = lib.mkIf cfg.enable { + services.xserver.windowManager.session = lib.singleton { + name = "dk"; + start = '' + export _JAVA_AWT_WM_NONREPARENTING=1 + ${cfg.package}/bin/dk & + waitPID=$! + ''; + }; + environment.systemPackages = [ cfg.package ]; + }; +} diff --git a/nixos/modules/system/boot/stage-1-init.sh b/nixos/modules/system/boot/stage-1-init.sh index f72342429a6d9..bad045ec101f1 100644 --- a/nixos/modules/system/boot/stage-1-init.sh +++ b/nixos/modules/system/boot/stage-1-init.sh @@ -374,22 +374,6 @@ mountFS() { checkFS "$device" "$fsType" - # Optionally resize the filesystem. - case $options in - *x-nixos.autoresize*) - if [ "$fsType" = ext2 -o "$fsType" = ext3 -o "$fsType" = ext4 ]; then - modprobe "$fsType" - echo "resizing $device..." - e2fsck -fp "$device" - resize2fs "$device" - elif [ "$fsType" = f2fs ]; then - echo "resizing $device..." - fsck.f2fs -fp "$device" - resize.f2fs "$device" - fi - ;; - esac - # Create backing directories for overlayfs if [ "$fsType" = overlay ]; then for i in upper work; do diff --git a/nixos/modules/system/boot/stage-1.nix b/nixos/modules/system/boot/stage-1.nix index 1229f6357523f..dcb15cf7d42b7 100644 --- a/nixos/modules/system/boot/stage-1.nix +++ b/nixos/modules/system/boot/stage-1.nix @@ -150,12 +150,6 @@ let copy_bin_and_libs ${pkgs.kmod}/bin/kmod ln -sf kmod $out/bin/modprobe - # Copy resize2fs if any ext* filesystems are to be resized - ${optionalString (any (fs: fs.autoResize && (lib.hasPrefix "ext" fs.fsType)) fileSystems) '' - # We need mke2fs in the initrd. - copy_bin_and_libs ${pkgs.e2fsprogs}/sbin/resize2fs - ''} - # Copy multipath. ${optionalString config.services.multipath.enable '' copy_bin_and_libs ${config.services.multipath.package}/bin/multipath diff --git a/nixos/modules/system/boot/systemd.nix b/nixos/modules/system/boot/systemd.nix index 5ff99b14dee67..d2af86fef57ce 100644 --- a/nixos/modules/system/boot/systemd.nix +++ b/nixos/modules/system/boot/systemd.nix @@ -588,6 +588,15 @@ in systemd.services."systemd-backlight@".restartIfChanged = false; systemd.services."systemd-fsck@".restartIfChanged = false; systemd.services."systemd-fsck@".path = [ config.system.path ]; + systemd.services."systemd-makefs@" = { + restartIfChanged = false; + path = [ pkgs.util-linux ] ++ config.system.fsPackages; + # Since there is no /etc/systemd/system/systemd-makefs@.service + # file, the units generated in /run/systemd/generator would + # override anything we put here. But by forcing the use of a + # drop-in in /etc, it does apply. + overrideStrategy = "asDropin"; + }; systemd.services.systemd-random-seed.restartIfChanged = false; systemd.services.systemd-remount-fs.restartIfChanged = false; systemd.services.systemd-update-utmp.restartIfChanged = false; diff --git a/nixos/modules/system/boot/systemd/initrd.nix b/nixos/modules/system/boot/systemd/initrd.nix index c9c219d0a0a59..3f40a5b2dfa0c 100644 --- a/nixos/modules/system/boot/systemd/initrd.nix +++ b/nixos/modules/system/boot/systemd/initrd.nix @@ -56,7 +56,6 @@ let "systemd-ask-password-console.path" "systemd-ask-password-console.service" "systemd-fsck@.service" - "systemd-growfs@.service" "systemd-halt.service" "systemd-hibernate-resume@.service" "systemd-journald-audit.socket" @@ -93,7 +92,6 @@ let fileSystems = filter utils.fsNeededForBoot config.system.build.fileSystems; needMakefs = lib.any (fs: fs.autoFormat) fileSystems; - needGrowfs = lib.any (fs: fs.autoResize) fileSystems; kernel-name = config.boot.kernelPackages.kernel.name or "kernel"; modulesTree = config.system.modulesTree.override { name = kernel-name + "-modules"; }; @@ -400,7 +398,6 @@ in { storePaths = [ # systemd tooling "${cfg.package}/lib/systemd/systemd-fsck" - (lib.mkIf needGrowfs "${cfg.package}/lib/systemd/systemd-growfs") "${cfg.package}/lib/systemd/systemd-hibernate-resume" "${cfg.package}/lib/systemd/systemd-journald" (lib.mkIf needMakefs "${cfg.package}/lib/systemd/systemd-makefs") diff --git a/nixos/modules/system/boot/systemd/logind.nix b/nixos/modules/system/boot/systemd/logind.nix index b0c927f19f9d7..cf01c18828573 100644 --- a/nixos/modules/system/boot/systemd/logind.nix +++ b/nixos/modules/system/boot/systemd/logind.nix @@ -11,64 +11,145 @@ let ]; in { - options = { - services.logind.extraConfig = mkOption { + options.services.logind = { + extraConfig = mkOption { default = ""; type = types.lines; example = "IdleAction=lock"; description = lib.mdDoc '' - Extra config options for systemd-logind. See - [ - logind.conf(5)](https://www.freedesktop.org/software/systemd/man/logind.conf.html) for available options. + Extra config options for systemd-logind. + See [logind.conf(5)](https://www.freedesktop.org/software/systemd/man/logind.conf.html) + for available options. ''; }; - services.logind.killUserProcesses = mkOption { + killUserProcesses = mkOption { default = false; type = types.bool; description = lib.mdDoc '' Specifies whether the processes of a user should be killed when the user logs out. If true, the scope unit corresponding to the session and all processes inside that scope will be - terminated. If false, the scope is "abandoned" (see - [systemd.scope(5)](https://www.freedesktop.org/software/systemd/man/systemd.scope.html#)), and processes are not killed. + terminated. If false, the scope is "abandoned" + (see [systemd.scope(5)](https://www.freedesktop.org/software/systemd/man/systemd.scope.html#)), + and processes are not killed. See [logind.conf(5)](https://www.freedesktop.org/software/systemd/man/logind.conf.html#KillUserProcesses=) for more details. ''; }; - services.logind.lidSwitch = mkOption { + powerKey = mkOption { + default = "poweroff"; + example = "ignore"; + type = logindHandlerType; + + description = lib.mdDoc '' + Specifies what to do when the power key is pressed. + ''; + }; + + powerKeyLongPress = mkOption { + default = "ignore"; + example = "reboot"; + type = logindHandlerType; + + description = lib.mdDoc '' + Specifies what to do when the power key is long-pressed. + ''; + }; + + rebootKey = mkOption { + default = "reboot"; + example = "ignore"; + type = logindHandlerType; + + description = lib.mdDoc '' + Specifies what to do when the reboot key is pressed. + ''; + }; + + rebootKeyLongPress = mkOption { + default = "poweroff"; + example = "ignore"; + type = logindHandlerType; + + description = lib.mdDoc '' + Specifies what to do when the reboot key is long-pressed. + ''; + }; + + suspendKey = mkOption { default = "suspend"; example = "ignore"; type = logindHandlerType; description = lib.mdDoc '' - Specifies what to be done when the laptop lid is closed. + Specifies what to do when the suspend key is pressed. + ''; + }; + + suspendKeyLongPress = mkOption { + default = "hibernate"; + example = "ignore"; + type = logindHandlerType; + + description = lib.mdDoc '' + Specifies what to do when the suspend key is long-pressed. + ''; + }; + + hibernateKey = mkOption { + default = "hibernate"; + example = "ignore"; + type = logindHandlerType; + + description = lib.mdDoc '' + Specifies what to do when the hibernate key is pressed. ''; }; - services.logind.lidSwitchDocked = mkOption { + hibernateKeyLongPress = mkOption { default = "ignore"; example = "suspend"; type = logindHandlerType; description = lib.mdDoc '' - Specifies what to be done when the laptop lid is closed - and another screen is added. + Specifies what to do when the hibernate key is long-pressed. ''; }; - services.logind.lidSwitchExternalPower = mkOption { + lidSwitch = mkOption { + default = "suspend"; + example = "ignore"; + type = logindHandlerType; + + description = lib.mdDoc '' + Specifies what to do when the laptop lid is closed. + ''; + }; + + lidSwitchExternalPower = mkOption { default = cfg.lidSwitch; defaultText = literalExpression "services.logind.lidSwitch"; example = "ignore"; type = logindHandlerType; description = lib.mdDoc '' - Specifies what to do when the laptop lid is closed and the system is - on external power. By default use the same action as specified in - services.logind.lidSwitch. + Specifies what to do when the laptop lid is closed + and the system is on external power. By default use + the same action as specified in services.logind.lidSwitch. + ''; + }; + + lidSwitchDocked = mkOption { + default = "ignore"; + example = "suspend"; + type = logindHandlerType; + + description = lib.mdDoc '' + Specifies what to do when the laptop lid is closed + and another screen is added. ''; }; }; @@ -94,9 +175,17 @@ in "systemd/logind.conf".text = '' [Login] KillUserProcesses=${if cfg.killUserProcesses then "yes" else "no"} + HandlePowerKey=${cfg.powerKey} + HandlePowerKeyLongPress=${cfg.powerKeyLongPress} + HandleRebootKey=${cfg.rebootKey} + HandleRebootKeyLongPress=${cfg.rebootKeyLongPress} + HandleSuspendKey=${cfg.suspendKey} + HandleSuspendKeyLongPress=${cfg.suspendKeyLongPress} + HandleHibernateKey=${cfg.hibernateKey} + HandleHibernateKeyLongPress=${cfg.hibernateKeyLongPress} HandleLidSwitch=${cfg.lidSwitch} - HandleLidSwitchDocked=${cfg.lidSwitchDocked} HandleLidSwitchExternalPower=${cfg.lidSwitchExternalPower} + HandleLidSwitchDocked=${cfg.lidSwitchDocked} ${cfg.extraConfig} ''; }; diff --git a/nixos/modules/tasks/filesystems.nix b/nixos/modules/tasks/filesystems.nix index 2f032c3faf5c9..7cb2ca23fa417 100644 --- a/nixos/modules/tasks/filesystems.nix +++ b/nixos/modules/tasks/filesystems.nix @@ -112,12 +112,9 @@ let }; formatOptions = mkOption { - default = ""; - type = types.str; - description = lib.mdDoc '' - If {option}`autoFormat` option is set specifies - extra options passed to mkfs. - ''; + visible = false; + type = types.unspecified; + default = null; }; autoResize = mkOption { @@ -139,22 +136,11 @@ let }; - config = let - defaultFormatOptions = - # -F needed to allow bare block device without partitions - if (builtins.substring 0 3 config.fsType) == "ext" then "-F" - # -q needed for non-interactive operations - else if config.fsType == "jfs" then "-q" - # (same here) - else if config.fsType == "reiserfs" then "-q" - else null; - in { - options = mkMerge [ - (mkIf config.autoResize [ "x-nixos.autoresize" ]) - (mkIf (utils.fsNeededForBoot config) [ "x-initrd.mount" ]) - ]; - formatOptions = mkIf (defaultFormatOptions != null) (mkDefault defaultFormatOptions); - }; + config.options = mkMerge [ + (mkIf config.autoResize [ "x-systemd.growfs" ]) + (mkIf config.autoFormat [ "x-systemd.makefs" ]) + (mkIf (utils.fsNeededForBoot config) [ "x-initrd.mount" ]) + ]; }; @@ -201,23 +187,20 @@ let skipCheck = fs: fs.noCheck || fs.device == "none" || builtins.elem fs.fsType fsToSkipCheck || isBindMount fs; # https://wiki.archlinux.org/index.php/fstab#Filepath_spaces escape = string: builtins.replaceStrings [ " " "\t" ] [ "\\040" "\\011" ] string; - in fstabFileSystems: { rootPrefix ? "", extraOpts ? (fs: []) }: concatMapStrings (fs: + in fstabFileSystems: { rootPrefix ? "" }: concatMapStrings (fs: (optionalString (isBindMount fs) (escape rootPrefix)) + (if fs.device != null then escape fs.device else if fs.label != null then "/dev/disk/by-label/${escape fs.label}" else throw "No device specified for mount point ‘${fs.mountPoint}’.") + " " + escape fs.mountPoint + " " + fs.fsType - + " " + escape (builtins.concatStringsSep "," (fs.options ++ (extraOpts fs))) + + " " + escape (builtins.concatStringsSep "," fs.options) + " 0 " + (if skipCheck fs then "0" else if fs.mountPoint == "/" then "1" else "2") + "\n" ) fstabFileSystems; initrdFstab = pkgs.writeText "initrd-fstab" (makeFstabEntries (filter utils.fsNeededForBoot fileSystems) { rootPrefix = "/sysroot"; - extraOpts = fs: - (optional fs.autoResize "x-systemd.growfs") - ++ (optional fs.autoFormat "x-systemd.makefs"); }); in @@ -319,7 +302,13 @@ in assertions = let ls = sep: concatMapStringsSep sep (x: x.mountPoint); - notAutoResizable = fs: fs.autoResize && !(hasPrefix "ext" fs.fsType || fs.fsType == "f2fs"); + resizableFSes = [ + "ext3" + "ext4" + "btrfs" + "xfs" + ]; + notAutoResizable = fs: fs.autoResize && !(builtins.elem fs.fsType resizableFSes); in [ { assertion = ! (fileSystems' ? cycle); message = "The ‘fileSystems’ option can't be topologically sorted: mountpoint dependency path ${ls " -> " fileSystems'.cycle} loops to ${ls ", " fileSystems'.loops}"; @@ -327,8 +316,21 @@ in { assertion = ! (any notAutoResizable fileSystems); message = let fs = head (filter notAutoResizable fileSystems); - in - "Mountpoint '${fs.mountPoint}': 'autoResize = true' is not supported for 'fsType = \"${fs.fsType}\"':${optionalString (fs.fsType == "auto") " fsType has to be explicitly set and"} only the ext filesystems and f2fs support it."; + in '' + Mountpoint '${fs.mountPoint}': 'autoResize = true' is not supported for 'fsType = "${fs.fsType}"' + ${optionalString (fs.fsType == "auto") "fsType has to be explicitly set and"} + only the following support it: ${lib.concatStringsSep ", " resizableFSes}. + ''; + } + { + assertion = ! (any (fs: fs.formatOptions != null) fileSystems); + message = let + fs = head (filter (fs: fs.formatOptions != null) fileSystems); + in '' + 'fileSystems.<name>.formatOptions' has been removed, since + systemd-makefs does not support any way to provide formatting + options. + ''; } ]; @@ -377,37 +379,7 @@ in wants = [ "local-fs.target" "remote-fs.target" ]; }; - systemd.services = - - # Emit systemd services to format requested filesystems. - let - formatDevice = fs: - let - mountPoint' = "${escapeSystemdPath fs.mountPoint}.mount"; - device' = escapeSystemdPath fs.device; - device'' = "${device'}.device"; - in nameValuePair "mkfs-${device'}" - { description = "Initialisation of Filesystem ${fs.device}"; - wantedBy = [ mountPoint' ]; - before = [ mountPoint' "systemd-fsck@${device'}.service" ]; - requires = [ device'' ]; - after = [ device'' ]; - path = [ pkgs.util-linux ] ++ config.system.fsPackages; - script = - '' - if ! [ -e "${fs.device}" ]; then exit 1; fi - # FIXME: this is scary. The test could be more robust. - type=$(blkid -p -s TYPE -o value "${fs.device}" || true) - if [ -z "$type" ]; then - echo "creating ${fs.fsType} filesystem on ${fs.device}..." - mkfs.${fs.fsType} ${fs.formatOptions} "${fs.device}" - fi - ''; - unitConfig.RequiresMountsFor = [ "${dirOf fs.device}" ]; - unitConfig.DefaultDependencies = false; # needed to prevent a cycle - serviceConfig.Type = "oneshot"; - }; - in listToAttrs (map formatDevice (filter (fs: fs.autoFormat && !(utils.fsNeededForBoot fs)) fileSystems)) // { + systemd.services = { # Mount /sys/fs/pstore for evacuating panic logs and crashdumps from persistent storage onto the disk using systemd-pstore. # This cannot be done with the other special filesystems because the pstore module (which creates the mount point) is not loaded then. "mount-pstore" = { diff --git a/nixos/modules/tasks/filesystems/f2fs.nix b/nixos/modules/tasks/filesystems/f2fs.nix index 1d52861aa39d1..035784f43df83 100644 --- a/nixos/modules/tasks/filesystems/f2fs.nix +++ b/nixos/modules/tasks/filesystems/f2fs.nix @@ -15,11 +15,6 @@ in boot.initrd.extraUtilsCommands = mkIf (inInitrd && !config.boot.initrd.systemd.enable) '' copy_bin_and_libs ${pkgs.f2fs-tools}/sbin/fsck.f2fs - ${optionalString (any (fs: fs.autoResize) fileSystems) '' - # We need f2fs-tools' tools to resize filesystems - copy_bin_and_libs ${pkgs.f2fs-tools}/sbin/resize.f2fs - ''} - ''; }; } diff --git a/nixos/modules/virtualisation/amazon-ec2-amis.nix b/nixos/modules/virtualisation/amazon-ec2-amis.nix index 446a1b0ecaab2..ff88f02e5d334 100644 --- a/nixos/modules/virtualisation/amazon-ec2-amis.nix +++ b/nixos/modules/virtualisation/amazon-ec2-amis.nix @@ -536,5 +536,53 @@ let self = { "22.11".us-west-1.aarch64-linux.hvm-ebs = "ami-052d52b9e30a18562"; "22.11".us-west-2.aarch64-linux.hvm-ebs = "ami-07418b6a4782c9521"; - latest = self."22.11"; + # 23.05.426.afc48694f2a + + "23.05".eu-west-1.x86_64-linux.hvm-ebs = "ami-0fc7825fe890f87d1"; + "23.05".af-south-1.x86_64-linux.hvm-ebs = "ami-0df2f7b42bfbd53e5"; + "23.05".ap-east-1.x86_64-linux.hvm-ebs = "ami-07ba84d7321f6f4bb"; + "23.05".ap-northeast-1.x86_64-linux.hvm-ebs = "ami-0e37827874573dbbf"; + "23.05".ap-northeast-2.x86_64-linux.hvm-ebs = "ami-0ff5b3b7738651895"; + "23.05".ap-northeast-3.x86_64-linux.hvm-ebs = "ami-0a7861571eb44c70c"; + "23.05".ap-south-1.x86_64-linux.hvm-ebs = "ami-05c4802ca81d7c95b"; + "23.05".ap-southeast-1.x86_64-linux.hvm-ebs = "ami-0aee8193da16bd2db"; + "23.05".ap-southeast-2.x86_64-linux.hvm-ebs = "ami-008be032289f60d16"; + "23.05".ap-southeast-3.x86_64-linux.hvm-ebs = "ami-033debde7c1659c96"; + "23.05".ca-central-1.x86_64-linux.hvm-ebs = "ami-031821b5f83896474"; + "23.05".eu-central-1.x86_64-linux.hvm-ebs = "ami-0d6ee9d5e1c985df6"; + "23.05".eu-north-1.x86_64-linux.hvm-ebs = "ami-0cecb1f67b2a837f6"; + "23.05".eu-south-1.x86_64-linux.hvm-ebs = "ami-0f9fee15eb5a64ac4"; + "23.05".eu-west-2.x86_64-linux.hvm-ebs = "ami-0e62fef78d2c4f031"; + "23.05".eu-west-3.x86_64-linux.hvm-ebs = "ami-01a6e4c1659b08390"; + "23.05".me-south-1.x86_64-linux.hvm-ebs = "ami-0a01a7eeffa8f0fd5"; + "23.05".sa-east-1.x86_64-linux.hvm-ebs = "ami-09a1760227f929ccf"; + "23.05".us-east-1.x86_64-linux.hvm-ebs = "ami-07df5833f04703a2a"; + "23.05".us-east-2.x86_64-linux.hvm-ebs = "ami-04dd2f100d9665df5"; + "23.05".us-west-1.x86_64-linux.hvm-ebs = "ami-0fe502361fea4216c"; + "23.05".us-west-2.x86_64-linux.hvm-ebs = "ami-0749963dd978a57c7"; + + "23.05".eu-west-1.aarch64-linux.hvm-ebs = "ami-0a0609421e5638005"; + "23.05".af-south-1.aarch64-linux.hvm-ebs = "ami-05d95a055aba9373e"; + "23.05".ap-east-1.aarch64-linux.hvm-ebs = "ami-08ae0190b1357465b"; + "23.05".ap-northeast-1.aarch64-linux.hvm-ebs = "ami-09418b2049c3c9533"; + "23.05".ap-northeast-2.aarch64-linux.hvm-ebs = "ami-040713ad23b404271"; + "23.05".ap-northeast-3.aarch64-linux.hvm-ebs = "ami-0c888d6c1d989db68"; + "23.05".ap-south-1.aarch64-linux.hvm-ebs = "ami-02da38deb21545675"; + "23.05".ap-southeast-1.aarch64-linux.hvm-ebs = "ami-06df0713468bea276"; + "23.05".ap-southeast-2.aarch64-linux.hvm-ebs = "ami-0171ee37ae5104c06"; + "23.05".ap-southeast-3.aarch64-linux.hvm-ebs = "ami-075da61f5fef1fe80"; + "23.05".ca-central-1.aarch64-linux.hvm-ebs = "ami-0ba8bd0a3d0a596f8"; + "23.05".eu-central-1.aarch64-linux.hvm-ebs = "ami-0891608ae66031439"; + "23.05".eu-north-1.aarch64-linux.hvm-ebs = "ami-0a3ad7ef18d595c68"; + "23.05".eu-south-1.aarch64-linux.hvm-ebs = "ami-0fa86b680aa9a0444"; + "23.05".eu-west-2.aarch64-linux.hvm-ebs = "ami-0a415791078f05970"; + "23.05".eu-west-3.aarch64-linux.hvm-ebs = "ami-05d9b146317962e3b"; + "23.05".me-south-1.aarch64-linux.hvm-ebs = "ami-0019b591acf30aa66"; + "23.05".sa-east-1.aarch64-linux.hvm-ebs = "ami-030d6c30d91f06cc7"; + "23.05".us-east-1.aarch64-linux.hvm-ebs = "ami-0a061ca437b63df33"; + "23.05".us-east-2.aarch64-linux.hvm-ebs = "ami-0bf0b2b8fdfda30e8"; + "23.05".us-west-1.aarch64-linux.hvm-ebs = "ami-0e75c8f3deb1f842b"; + "23.05".us-west-2.aarch64-linux.hvm-ebs = "ami-0d0979d889078d036"; + + latest = self."23.05"; }; in self diff --git a/nixos/modules/virtualisation/libvirtd.nix b/nixos/modules/virtualisation/libvirtd.nix index 537db537279a1..8dfe04cea5427 100644 --- a/nixos/modules/virtualisation/libvirtd.nix +++ b/nixos/modules/virtualisation/libvirtd.nix @@ -308,7 +308,9 @@ in libvirt/nwfilter/*.xml ); do mkdir -p /var/lib/$(dirname $i) -m 755 - cp -npd ${cfg.package}/var/lib/$i /var/lib/$i + if [ ! -e /var/lib/$i ]; then + cp -pd ${cfg.package}/var/lib/$i /var/lib/$i + fi done # Copy generated qemu config to libvirt directory diff --git a/nixos/modules/virtualisation/qemu-vm.nix b/nixos/modules/virtualisation/qemu-vm.nix index 388ba81684566..7d8c83ed78db9 100644 --- a/nixos/modules/virtualisation/qemu-vm.nix +++ b/nixos/modules/virtualisation/qemu-vm.nix @@ -1,11 +1,8 @@ # This module creates a virtual machine from the NixOS configuration. # Building the `config.system.build.vm' attribute gives you a command # that starts a KVM/QEMU VM running the NixOS configuration defined in -# `config'. The Nix store is shared read-only with the host, which -# makes (re)building VMs very efficient. However, it also means you -# can't reconfigure the guest inside the guest - you need to rebuild -# the VM in the host. On the other hand, the root filesystem is a -# read/writable disk image persistent across VM reboots. +# `config'. By default, the Nix store is shared read-only with the +# host, which makes (re)building VMs very efficient. { config, lib, pkgs, options, ... }: @@ -778,12 +775,11 @@ in default = false; description = lib.mdDoc '' - If enabled, the virtual machine will be booted using the - regular boot loader (i.e., GRUB 1 or 2). This allows - testing of the boot loader. If - disabled (the default), the VM directly boots the NixOS - kernel and initial ramdisk, bypassing the boot loader - altogether. + Use a boot loader to boot the system. + This allows, among other things, testing the boot loader. + + If disabled, the kernel and initrd are directly booted, + forgoing any bootloader. ''; }; @@ -1026,7 +1022,6 @@ in "-netdev user,id=user.0,${forwardingOptions}${restrictNetworkOption}\"$QEMU_NET_OPTS\"" ]; - # FIXME: Consolidate this one day. virtualisation.qemu.options = mkMerge [ (mkIf cfg.qemu.virtioKeyboard [ "-device virtio-keyboard" @@ -1078,14 +1073,12 @@ in }) cfg.emptyDiskImages) ]; + # Use mkVMOverride to enable building test VMs (e.g. via `nixos-rebuild + # build-vm`) of a system configuration, where the regular value for the + # `fileSystems' attribute should be disregarded (since those filesystems + # don't necessarily exist in the VM). fileSystems = mkVMOverride cfg.fileSystems; - # Mount the host filesystem via 9P, and bind-mount the Nix store - # of the host into our own filesystem. We use mkVMOverride to - # allow this module to be applied to "normal" NixOS system - # configuration, where the regular value for the `fileSystems' - # attribute should be disregarded for the purpose of building a VM - # test image (since those filesystems don't exist in the VM). virtualisation.fileSystems = let mkSharedDir = tag: share: { diff --git a/nixos/tests/aaaaxy.nix b/nixos/tests/aaaaxy.nix index 90b3c85e0c5f2..19861198c3697 100644 --- a/nixos/tests/aaaaxy.nix +++ b/nixos/tests/aaaaxy.nix @@ -21,7 +21,7 @@ "ln -s '${pkgs.aaaaxy.testing_infra}/assets/demos/benchmark.dem' '/tmp/aaaaxy/assets/demos/'", """ '${pkgs.aaaaxy.testing_infra}/scripts/regression-test-demo.sh' \ - 'aaaaxy' 'on track for Any%, All Paths and No Teleports' \ + 'aaaaxy' 'on track for Any%, All Paths, No Teleports and No Coil' \ '${pkgs.aaaaxy}/bin/aaaaxy' '/tmp/aaaaxy/assets/demos/benchmark.dem' """, ) diff --git a/nixos/tests/acme-dns.nix b/nixos/tests/acme-dns.nix new file mode 100644 index 0000000000000..92d9498fe714e --- /dev/null +++ b/nixos/tests/acme-dns.nix @@ -0,0 +1,50 @@ +import ./make-test-python.nix ({ ... }: { + name = "acme-dns"; + + nodes.machine = { pkgs, ... }: { + services.acme-dns = { + enable = true; + settings = { + general = rec { + domain = "acme-dns.home.arpa"; + nsname = domain; + nsadmin = "admin.home.arpa"; + records = [ + "${domain}. A 127.0.0.1" + "${domain}. AAAA ::1" + "${domain}. NS ${domain}." + ]; + }; + logconfig.loglevel = "debug"; + }; + }; + environment.systemPackages = with pkgs; [ curl bind ]; + }; + + testScript = '' + import json + + machine.wait_for_unit("acme-dns.service") + machine.wait_for_open_port(53) # dns + machine.wait_for_open_port(8080) # http api + + result = machine.succeed("curl --fail -X POST http://localhost:8080/register") + print(result) + + registration = json.loads(result) + + machine.succeed(f'dig -t TXT @localhost {registration["fulldomain"]} | grep "SOA" | grep "admin.home.arpa"') + + # acme-dns exspects a TXT value string length of exactly 43 chars + txt = "___dummy_validation_token_for_txt_record___" + + machine.succeed( + "curl --fail -X POST http://localhost:8080/update " + + f' -H "X-Api-User: {registration["username"]}"' + + f' -H "X-Api-Key: {registration["password"]}"' + + f' -d \'{{"subdomain":"{registration["subdomain"]}", "txt":"{txt}"}}\''' + ) + + assert txt in machine.succeed(f'dig -t TXT +short @localhost {registration["fulldomain"]}') + ''; +}) diff --git a/nixos/tests/all-tests.nix b/nixos/tests/all-tests.nix index abe281a204b4f..e597a26f31bbf 100644 --- a/nixos/tests/all-tests.nix +++ b/nixos/tests/all-tests.nix @@ -95,6 +95,7 @@ in { _3proxy = runTest ./3proxy.nix; aaaaxy = runTest ./aaaaxy.nix; acme = runTest ./acme.nix; + acme-dns = handleTest ./acme-dns.nix {}; adguardhome = runTest ./adguardhome.nix; aesmd = runTestOn ["x86_64-linux"] ./aesmd.nix; agate = runTest ./web-servers/agate.nix; @@ -170,6 +171,7 @@ in { cntr = handleTestOn ["aarch64-linux" "x86_64-linux"] ./cntr.nix {}; cockpit = handleTest ./cockpit.nix {}; cockroachdb = handleTestOn ["x86_64-linux"] ./cockroachdb.nix {}; + code-server = handleTest ./code-server.nix {}; coder = handleTest ./coder.nix {}; collectd = handleTest ./collectd.nix {}; connman = handleTest ./connman.nix {}; @@ -612,6 +614,7 @@ in { postfix-raise-smtpd-tls-security-level = handleTest ./postfix-raise-smtpd-tls-security-level.nix {}; postfixadmin = handleTest ./postfixadmin.nix {}; postgis = handleTest ./postgis.nix {}; + apache_datasketches = handleTest ./apache_datasketches.nix {}; postgresql = handleTest ./postgresql.nix {}; postgresql-jit = handleTest ./postgresql-jit.nix {}; postgresql-wal-receiver = handleTest ./postgresql-wal-receiver.nix {}; diff --git a/nixos/tests/apache_datasketches.nix b/nixos/tests/apache_datasketches.nix new file mode 100644 index 0000000000000..2bf099ac7991b --- /dev/null +++ b/nixos/tests/apache_datasketches.nix @@ -0,0 +1,29 @@ +import ./make-test-python.nix ({ pkgs, ...} : { + name = "postgis"; + meta = with pkgs.lib.maintainers; { + maintainers = [ lsix ]; # TODO: Who's the maintener now? + }; + + nodes = { + master = + { pkgs, ... }: + + { + services.postgresql = let mypg = pkgs.postgresql_15; in { + enable = true; + package = mypg; + extraPlugins = with mypg.pkgs; [ + apache_datasketches + ]; + }; + }; + }; + + testScript = '' + start_all() + master.wait_for_unit("postgresql") + master.sleep(10) # Hopefully this is long enough!! + master.succeed("sudo -u postgres psql -c 'CREATE EXTENSION datasketches;'") + master.succeed("sudo -u postgres psql -c 'SELECT hll_sketch_to_string(hll_sketch_build(1));'") + ''; +}) diff --git a/nixos/tests/apparmor.nix b/nixos/tests/apparmor.nix index 99a5cd558eb02..be91e9632849c 100644 --- a/nixos/tests/apparmor.nix +++ b/nixos/tests/apparmor.nix @@ -1,4 +1,4 @@ -import ./make-test-python.nix ({ pkgs, ... } : { +import ./make-test-python.nix ({ pkgs, lib, ... } : { name = "apparmor"; meta.maintainers = with lib.maintainers; [ julm ]; @@ -27,7 +27,7 @@ import ./make-test-python.nix ({ pkgs, ... } : { # 4. Using `diff` against the expected output. with subtest("apparmorRulesFromClosure"): machine.succeed( - "${pkgs.diffutils}/bin/diff ${pkgs.writeText "expected.rules" '' + "${pkgs.diffutils}/bin/diff -u ${pkgs.writeText "expected.rules" '' mr ${pkgs.bash}/lib/**.so*, r ${pkgs.bash}, r ${pkgs.bash}/etc/**, @@ -64,6 +64,12 @@ import ./make-test-python.nix ({ pkgs, ... } : { r ${pkgs.libunistring}/lib/**, r ${pkgs.libunistring}/share/**, x ${pkgs.libunistring}/foo/**, + mr ${pkgs.glibc.libgcc}/lib/**.so*, + r ${pkgs.glibc.libgcc}, + r ${pkgs.glibc.libgcc}/etc/**, + r ${pkgs.glibc.libgcc}/lib/**, + r ${pkgs.glibc.libgcc}/share/**, + x ${pkgs.glibc.libgcc}/foo/**, ''} ${pkgs.runCommand "actual.rules" { preferLocalBuild = true; } '' ${pkgs.gnused}/bin/sed -e 's:^[^ ]* ${builtins.storeDir}/[^,/-]*-\([^/,]*\):\1 \0:' ${ pkgs.apparmorRulesFromClosure { diff --git a/nixos/tests/cinnamon.nix b/nixos/tests/cinnamon.nix index e455d96c4fb09..2a1389231904c 100644 --- a/nixos/tests/cinnamon.nix +++ b/nixos/tests/cinnamon.nix @@ -3,7 +3,7 @@ import ./make-test-python.nix ({ pkgs, lib, ... }: { meta.maintainers = lib.teams.cinnamon.members; - nodes.machine = { nodes, ... }: { + nodes.machine = { ... }: { imports = [ ./common/user-account.nix ]; services.xserver.enable = true; services.xserver.desktopManager.cinnamon.enable = true; @@ -13,7 +13,7 @@ import ./make-test-python.nix ({ pkgs, lib, ... }: { testScript = { nodes, ... }: let - user = nodes.machine.config.users.users.alice; + user = nodes.machine.users.users.alice; uid = toString user.uid; bus = "DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/${uid}/bus"; display = "DISPLAY=:0.0"; diff --git a/nixos/tests/code-server.nix b/nixos/tests/code-server.nix new file mode 100644 index 0000000000000..7d523dfc617e3 --- /dev/null +++ b/nixos/tests/code-server.nix @@ -0,0 +1,22 @@ +import ./make-test-python.nix ({pkgs, lib, ...}: +{ + name = "code-server"; + + nodes = { + machine = {pkgs, ...}: { + services.code-server = { + enable = true; + auth = "none"; + }; + }; + }; + + testScript = '' + start_all() + machine.wait_for_unit("code-server.service") + machine.wait_for_open_port(4444) + machine.succeed("curl -k --fail http://localhost:4444", timeout=10) + ''; + + meta.maintainers = [ lib.maintainers.drupol ]; +}) diff --git a/nixos/tests/fsck.nix b/nixos/tests/fsck.nix index ccb664be080c6..ec6bfa69ae844 100644 --- a/nixos/tests/fsck.nix +++ b/nixos/tests/fsck.nix @@ -30,7 +30,7 @@ import ./make-test-python.nix { else "fsck.ext4.*/dev/vda"}'") with subtest("mnt fs is fsckd"): - machine.succeed("journalctl -b | grep 'fsck.*/dev/vdb.*clean'") + machine.succeed("journalctl -b | grep 'fsck.*vdb.*clean'") machine.succeed( "grep 'Requires=systemd-fsck@dev-vdb.service' /run/systemd/generator/mnt.mount" ) diff --git a/nixos/tests/gitlab.nix b/nixos/tests/gitlab.nix index d4e7603c20caa..88cd774f815a5 100644 --- a/nixos/tests/gitlab.nix +++ b/nixos/tests/gitlab.nix @@ -19,13 +19,13 @@ let aliceUsername = "alice"; aliceUserId = "2"; alicePassword = "R5twyCgU0uXC71wT9BBTCqLs6HFZ7h3L"; - aliceProjectId = "2"; + aliceProjectId = "1"; aliceProjectName = "test-alice"; bobUsername = "bob"; bobUserId = "3"; bobPassword = "XwkkBbl2SiIwabQzgcoaTbhsotijEEtF"; - bobProjectId = "3"; + bobProjectId = "2"; in { name = "gitlab"; meta.maintainers = with lib.maintainers; [ globin yayayayaka ]; diff --git a/nixos/tests/kanidm.nix b/nixos/tests/kanidm.nix index d9c0542c4c2e0..7e174590cb5f2 100644 --- a/nixos/tests/kanidm.nix +++ b/nixos/tests/kanidm.nix @@ -63,12 +63,27 @@ import ./make-test-python.nix ({ pkgs, ... }: '' start_all() server.wait_for_unit("kanidm.service") - server.wait_until_succeeds("curl -sf https://${serverDomain} | grep Kanidm") - server.succeed("ldapsearch -H ldaps://${serverDomain}:636 -b '${ldapBaseDN}' -x '(name=test)'") - client.succeed("kanidm login -D anonymous && kanidm self whoami | grep anonymous@${serverDomain}") - rv, result = server.execute("kanidmd recover_account -c ${serverConfigFile} idm_admin 2>&1 | rg -o '[A-Za-z0-9]{48}'") - assert rv == 0 - client.wait_for_unit("kanidm-unixd.service") - client.succeed("kanidm_unixd_status | grep working!") + + with subtest("Test HTTP interface"): + server.wait_until_succeeds("curl -sf https://${serverDomain} | grep Kanidm") + + with subtest("Test LDAP interface"): + server.succeed("ldapsearch -H ldaps://${serverDomain}:636 -b '${ldapBaseDN}' -x '(name=test)'") + + with subtest("Test CLI login"): + client.succeed("kanidm login -D anonymous") + client.succeed("kanidm self whoami | grep anonymous@${serverDomain}") + + with subtest("Recover idm_admin account"): + # Must stop the server for account recovery or else kanidmd fails with + # "unable to lock kanidm exclusive lock at /var/lib/kanidm/kanidm.db.klock". + server.succeed("systemctl stop kanidm") + server.succeed("su - kanidm -c 'kanidmd recover-account -c ${serverConfigFile} idm_admin 2>&1 | rg -o \'[A-Za-z0-9]{48}\' '") + server.succeed("systemctl start kanidm") + + with subtest("Test unixd connection"): + client.wait_for_unit("kanidm-unixd.service") + # TODO: client.wait_for_file("/run/kanidm-unixd/sock") + client.wait_until_succeeds("kanidm-unix status | grep working!") ''; }) diff --git a/nixos/tests/nginx-http3.nix b/nixos/tests/nginx-http3.nix index f003130b46f54..fc9f31037f989 100644 --- a/nixos/tests/nginx-http3.nix +++ b/nixos/tests/nginx-http3.nix @@ -76,19 +76,19 @@ in server.wait_for_open_port(443) # Check http connections - client.succeed("curl --verbose --http3 https://acme.test | grep 'Hello World!'") + client.succeed("curl --verbose --http3-only https://acme.test | grep 'Hello World!'") # Check downloadings - client.succeed("curl --verbose --http3 https://acme.test/example.txt --output /tmp/example.txt") + client.succeed("curl --verbose --http3-only https://acme.test/example.txt --output /tmp/example.txt") client.succeed("cat /tmp/example.txt | grep 'Check http3 protocol.'") # Check header reading - client.succeed("curl --verbose --http3 --head https://acme.test | grep 'content-type'") - client.succeed("curl --verbose --http3 --head https://acme.test | grep 'HTTP/3 200'") - client.succeed("curl --verbose --http3 --head https://acme.test/error | grep 'HTTP/3 404'") + client.succeed("curl --verbose --http3-only --head https://acme.test | grep 'content-type'") + client.succeed("curl --verbose --http3-only --head https://acme.test | grep 'HTTP/3 200'") + client.succeed("curl --verbose --http3-only --head https://acme.test/error | grep 'HTTP/3 404'") # Check change User-Agent - client.succeed("curl --verbose --http3 --user-agent 'Curl test 3.0' https://acme.test") + client.succeed("curl --verbose --http3-only --user-agent 'Curl test 3.0' https://acme.test") server.succeed("cat /var/log/nginx/access.log | grep 'Curl test 3.0'") server.shutdown() diff --git a/nixos/tests/ntfy-sh.nix b/nixos/tests/ntfy-sh.nix index 4492fb44cedc2..ec2e645bacb5b 100644 --- a/nixos/tests/ntfy-sh.nix +++ b/nixos/tests/ntfy-sh.nix @@ -3,6 +3,7 @@ import ./make-test-python.nix { nodes.machine = { ... }: { services.ntfy-sh.enable = true; + services.ntfy-sh.settings.base-url = "http://localhost:2586"; }; testScript = '' @@ -12,12 +13,14 @@ import ./make-test-python.nix { machine.wait_for_unit("multi-user.target") - machine.wait_for_open_port(80) + machine.wait_for_open_port(2586) - machine.succeed(f"curl -d '{msg}' localhost:80/test") + machine.succeed(f"curl -d '{msg}' localhost:2586/test") - notif = json.loads(machine.succeed("curl -s localhost:80/test/json?poll=1")) + notif = json.loads(machine.succeed("curl -s localhost:2586/test/json?poll=1")) assert msg == notif["message"], "Wrong message" + + machine.succeed("ntfy user list") ''; } diff --git a/nixos/tests/prometheus-exporters.nix b/nixos/tests/prometheus-exporters.nix index 9e9e3b0fa14c4..a69f2347b54b1 100644 --- a/nixos/tests/prometheus-exporters.nix +++ b/nixos/tests/prometheus-exporters.nix @@ -284,6 +284,29 @@ let ''; }; + graphite = { + exporterConfig = { + enable = true; + port = 9108; + graphitePort = 9109; + mappingSettings.mappings = [{ + match = "test.*.*"; + name = "testing"; + labels = { + protocol = "$1"; + author = "$2"; + }; + }]; + }; + exporterTest = '' + wait_for_unit("prometheus-graphite-exporter.service") + wait_for_open_port(9108) + wait_for_open_port(9109) + succeed("echo test.tcp.foo-bar 1234 $(date +%s) | nc -w1 localhost 9109") + succeed("curl -sSf http://localhost:9108/metrics | grep 'testing{author=\"foo-bar\",protocol=\"tcp\"} 1234'") + ''; + }; + influxdb = { exporterConfig = { enable = true; diff --git a/nixos/tests/public-inbox.nix b/nixos/tests/public-inbox.nix index 232a688e221de..784ef9e3dc28e 100644 --- a/nixos/tests/public-inbox.nix +++ b/nixos/tests/public-inbox.nix @@ -14,7 +14,7 @@ in meta.maintainers = with pkgs.lib.maintainers; [ julm ]; - machine = { config, pkgs, nodes, ... }: let + nodes.machine = { config, pkgs, nodes, ... }: let inherit (config.services) gitolite public-inbox; # Git repositories paths in Gitolite. # Only their baseNameOf is used for configuring public-inbox. @@ -221,7 +221,7 @@ in # Delete a mail. # Note that the use of an extension not listed in the addresses # require to use --all - machine.succeed("curl -L https://machine.example.localdomain/inbox/repo1/repo1@root-1/raw | sudo -u public-inbox public-inbox-learn rm --all") - machine.fail("curl -L https://machine.example.localdomain/inbox/repo1/repo1@root-1/T/#u | grep 'This is a testing mail.'") + machine.succeed("curl -L https://machine.${domain}/inbox/repo1/repo1@root-1/raw | sudo -u public-inbox public-inbox-learn rm --all") + machine.fail("curl -L https://machine.${domain}/inbox/repo1/repo1@root-1/T/#u | grep 'This is a testing mail.'") ''; }) diff --git a/nixos/tests/systemd-boot-ovmf-broken-fat-driver.patch b/nixos/tests/systemd-boot-ovmf-broken-fat-driver.patch new file mode 100644 index 0000000000000..ef547c02f9187 --- /dev/null +++ b/nixos/tests/systemd-boot-ovmf-broken-fat-driver.patch @@ -0,0 +1,25 @@ +From d87a7513c6f2f2824203032ef27caeb84892ed7e Mon Sep 17 00:00:00 2001 +From: Will Fancher <elvishjerricco@gmail.com> +Date: Tue, 30 May 2023 16:53:20 -0400 +Subject: [PATCH] Intentionally break the fat driver + +--- + FatPkg/EnhancedFatDxe/ReadWrite.c | 5 +++++ + 1 file changed, 5 insertions(+) + +diff --git a/FatPkg/EnhancedFatDxe/ReadWrite.c b/FatPkg/EnhancedFatDxe/ReadWrite.c +index 8f525044d1f1..32c62ff7817b 100644 +--- a/FatPkg/EnhancedFatDxe/ReadWrite.c ++++ b/FatPkg/EnhancedFatDxe/ReadWrite.c +@@ -216,6 +216,11 @@ FatIFileAccess ( + Volume = OFile->Volume; + Task = NULL; + ++ if (*BufferSize > (10U * 1024U * 1024U)) { ++ IFile->Position += 10U * 1024U * 1024U; ++ return EFI_BAD_BUFFER_SIZE; ++ } ++ + // + // Write to a directory is unsupported + // diff --git a/nixos/tests/systemd-boot.nix b/nixos/tests/systemd-boot.nix index 94e269ff37bb8..1583b2f814717 100644 --- a/nixos/tests/systemd-boot.nix +++ b/nixos/tests/systemd-boot.nix @@ -251,4 +251,30 @@ in machine.succeed("test -e /boot/efi/nixos/.extra-files/efi/netbootxyz/netboot.xyz.efi") ''; }; + + # Some UEFI firmwares fail on large reads. Now that systemd-boot loads initrd + # itself, systems with such firmware won't boot without this fix + uefiLargeFileWorkaround = makeTest { + name = "uefi-large-file-workaround"; + + nodes.machine = { pkgs, ... }: { + imports = [common]; + virtualisation.efi.OVMF = pkgs.OVMF.overrideAttrs (old: { + # This patch deliberately breaks the FAT driver in EDK2 to + # exhibit (part of) the firmware bug that we are testing + # for. Files greater than 10MiB will fail to be read in a + # single Read() call, so systemd-boot will fail to load the + # initrd without a workaround. The number 10MiB was chosen + # because if it were smaller than the kernel size, even the + # LoadImage call would fail, which is not the failure mode + # we're testing for. It needs to be between the kernel size + # and the initrd size. + patches = old.patches or [] ++ [ ./systemd-boot-ovmf-broken-fat-driver.patch ]; + }); + }; + + testScript = '' + machine.wait_for_unit("multi-user.target") + ''; + }; } diff --git a/nixos/tests/taskserver.nix b/nixos/tests/taskserver.nix index b2bd421e231f0..254bc8822f89d 100644 --- a/nixos/tests/taskserver.nix +++ b/nixos/tests/taskserver.nix @@ -69,23 +69,14 @@ in { testOrganisation.users = [ "alice" "foo" ]; anotherOrganisation.users = [ "bob" ]; }; - }; - # New generation of the server with manual config - newServer = { lib, nodes, ... }: { - imports = [ server ]; - services.taskserver.pki.manual = { - ca.cert = snakeOil.cacert; - server.cert = snakeOil.cert; - server.key = snakeOil.key; - server.crl = snakeOil.crl; - }; - # This is to avoid assigning a different network address to the new - # generation. - networking = lib.mapAttrs (lib.const lib.mkForce) { - interfaces.eth1.ipv4 = nodes.server.config.networking.interfaces.eth1.ipv4; - inherit (nodes.server.config.networking) - hostName primaryIPAddress extraHosts; + specialisation.manual-config.configuration = { + services.taskserver.pki.manual = { + ca.cert = snakeOil.cacert; + server.cert = snakeOil.cert; + server.key = snakeOil.key; + server.crl = snakeOil.crl; + }; }; }; @@ -103,7 +94,8 @@ in { testScript = { nodes, ... }: let cfg = nodes.server.config.services.taskserver; portStr = toString cfg.listenPort; - newServerSystem = nodes.newServer.config.system.build.toplevel; + specialisations = "${nodes.server.system.build.toplevel}/specialisation"; + newServerSystem = "${specialisations}/manual-config"; switchToNewServer = "${newServerSystem}/bin/switch-to-configuration test"; in '' from shlex import quote diff --git a/nixos/tests/traefik.nix b/nixos/tests/traefik.nix index 989ec390c0603..ce808e6ec95a0 100644 --- a/nixos/tests/traefik.nix +++ b/nixos/tests/traefik.nix @@ -52,10 +52,13 @@ import ./make-test-python.nix ({ pkgs, ... }: { sendAnonymousUsage = false; }; - entryPoints.web.address = ":80"; + entryPoints.web.address = ":\${HTTP_PORT}"; providers.docker.exposedByDefault = false; }; + environmentFiles = [(pkgs.writeText "traefik.env" '' + HTTP_PORT=80 + '')]; }; systemd.services.simplehttp = { diff --git a/nixos/tests/virtualbox.nix b/nixos/tests/virtualbox.nix index 0be22bdcaea6f..1ebd99f5d75dc 100644 --- a/nixos/tests/virtualbox.nix +++ b/nixos/tests/virtualbox.nix @@ -386,7 +386,7 @@ let ''; meta = with pkgs.lib.maintainers; { - maintainers = [ aszlig cdepillabout ]; + maintainers = [ aszlig ]; }; }; diff --git a/pkgs/applications/audio/eartag/default.nix b/pkgs/applications/audio/eartag/default.nix index 29844df2c2af4..ee76e8ecb2821 100644 --- a/pkgs/applications/audio/eartag/default.nix +++ b/pkgs/applications/audio/eartag/default.nix @@ -18,7 +18,7 @@ python3Packages.buildPythonApplication rec { pname = "eartag"; - version = "0.3.3"; + version = "0.4.0"; format = "other"; src = fetchFromGitLab { @@ -26,7 +26,7 @@ python3Packages.buildPythonApplication rec { owner = "knuxify"; repo = pname; rev = version; - sha256 = "sha256-120voKmlEDsVSxNfqmwBvTB90dQUwnf2CtxvOKqi8+U="; + sha256 = "sha256-4Kk/+iQNRqba5W/AdPlZ17Siwyy+WQuRYCb7M68S71I="; }; postPatch = '' @@ -60,6 +60,7 @@ python3Packages.buildPythonApplication rec { mutagen pytaglib python-magic + pyacoustid ]; dontWrapGApps = true; diff --git a/pkgs/applications/audio/flacon/default.nix b/pkgs/applications/audio/flacon/default.nix index 4a3e0a9ae24eb..7bf9d7fb918f5 100644 --- a/pkgs/applications/audio/flacon/default.nix +++ b/pkgs/applications/audio/flacon/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "flacon"; - version = "11.0.0"; + version = "11.1.0"; src = fetchFromGitHub { owner = "flacon"; repo = "flacon"; rev = "v${version}"; - sha256 = "sha256-xc+pp1phFtcGDCsLzzjWjZBfRJ5ss/F1Nm8/s9sWPfs="; + sha256 = "sha256-nAJKTRkx8d53v1tPnu5ARrRoESKh4jUOCcD54bhE8TU="; }; nativeBuildInputs = [ cmake pkg-config wrapQtAppsHook ]; diff --git a/pkgs/applications/audio/furnace/default.nix b/pkgs/applications/audio/furnace/default.nix index 372a873ca5804..d916e68292e2c 100644 --- a/pkgs/applications/audio/furnace/default.nix +++ b/pkgs/applications/audio/furnace/default.nix @@ -10,6 +10,7 @@ , fftw , fmt_8 , libsndfile +, libX11 , rtmidi , SDL2 , zlib @@ -21,16 +22,23 @@ stdenv.mkDerivation rec { pname = "furnace"; - version = "0.6pre4-hotfix"; + version = "0.6pre5"; src = fetchFromGitHub { owner = "tildearrow"; repo = "furnace"; rev = "v${version}"; fetchSubmodules = true; - sha256 = "sha256-lJtV/0GnWN5mSjv2LaPEMnkuThaNeijBMjLGFPOJX4k="; + sha256 = "sha256-6KiG7nfQUdPW+EkBW3PPM141kOmolAgrrqhEGH/Azg4="; }; + postPatch = lib.optionalString stdenv.hostPlatform.isLinux '' + # To offer scaling detection on X11, furnace checks if libX11.so is available via dlopen and uses some of its functions + # But it's being linked against a versioned libX11.so.VERSION via SDL, so the unversioned one is not on the rpath + substituteInPlace src/gui/scaling.cpp \ + --replace 'libX11.so' '${lib.getLib libX11}/lib/libX11.so' + ''; + nativeBuildInputs = [ cmake pkg-config @@ -97,6 +105,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Multi-system chiptune tracker compatible with DefleMask modules"; homepage = "https://github.com/tildearrow/furnace"; + changelog = "https://github.com/tildearrow/furnace/releases/tag/v${version}"; license = with licenses; [ gpl2Plus ]; maintainers = with maintainers; [ OPNA2608 ]; platforms = platforms.all; diff --git a/pkgs/applications/audio/musikcube/default.nix b/pkgs/applications/audio/musikcube/default.nix index 92b12140c47bf..9c6c8d30f4c5e 100644 --- a/pkgs/applications/audio/musikcube/default.nix +++ b/pkgs/applications/audio/musikcube/default.nix @@ -32,13 +32,13 @@ stdenv.mkDerivation rec { pname = "musikcube"; - version = "3.0.0"; + version = "3.0.1"; src = fetchFromGitHub { owner = "clangen"; repo = pname; rev = version; - hash = "sha512-W+Zug1SiOGJ+o6FBf2jeDGHFj87vudR4drtjyXiOzdoM8fUCnCj4pp7+70eZGilg6CvBi7CYkbVn53LXJf5qWA=="; + hash = "sha512-ahKPmChHRVpOQcgt0fOYumlsMApeN4MWwywE9F0edeN0Xr3Vp830mWGzEBJvMvGI/lnU/1rd7tREaHfm1vCJaw=="; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/applications/audio/noson/default.nix b/pkgs/applications/audio/noson/default.nix new file mode 100644 index 0000000000000..f1b932013a6e2 --- /dev/null +++ b/pkgs/applications/audio/noson/default.nix @@ -0,0 +1,51 @@ +{ stdenv +, lib +, fetchFromGitHub +, cmake +, flac +, libpulseaudio +, qtbase +, qtgraphicaleffects +, qtquickcontrols2 +, wrapQtAppsHook +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "noson"; + version = "5.4.1"; + + src = fetchFromGitHub { + owner = "janbar"; + repo = "noson-app"; + rev = finalAttrs.version; + hash = "sha256-7RrBfkUCRVzUGl+OT3OuoMlu4D3Sa7RpBefFgmfX1Fs="; + }; + + nativeBuildInputs = [ + cmake + wrapQtAppsHook + ]; + + buildInputs = [ + flac + libpulseaudio + qtbase + qtgraphicaleffects + qtquickcontrols2 + ]; + + # wrapQtAppsHook doesn't automatically find noson-gui + dontWrapQtApps = true; + preFixup = '' + wrapQtApp "$out/lib/noson/noson-gui" + ''; + + meta = with lib; { + description = "SONOS controller for Linux (and macOS)"; + homepage = "https://janbar.github.io/noson-app/"; + mainProgram = "noson-app"; + platforms = platforms.linux ++ platforms.darwin; + license = [ licenses.gpl3Only ]; + maintainers = with maintainers; [ callahad ]; + }; +}) diff --git a/pkgs/applications/audio/nova-filters/default.nix b/pkgs/applications/audio/nova-filters/default.nix index 4400535a931b7..1c457c8a0e7b7 100644 --- a/pkgs/applications/audio/nova-filters/default.nix +++ b/pkgs/applications/audio/nova-filters/default.nix @@ -1,33 +1,50 @@ -{lib, stdenv, fetchurl, scons, boost, ladspaH, pkg-config }: +{ lib +, stdenv +, fetchurl +, scons +, boost +, ladspaH +, libcxxabi +}: -stdenv.mkDerivation { - version = "0.2-2"; +stdenv.mkDerivation (finalAttrs: { pname = "nova-filters"; + version = "0.2-2"; src = fetchurl { - url = "https://klingt.org/~tim/nova-filters/nova-filters_0.2-2.tar.gz"; - sha256 = "16064vvl2w5lz4xi3lyjk4xx7fphwsxc14ajykvndiz170q32s6i"; + url = "https://klingt.org/~tim/nova-filters/nova-filters_${finalAttrs.version}.tar.gz"; + hash = "sha256-0WgxMDjhx2b39FKRwLrm8LrTO5nS0xE7+bRwQfcmBpg="; }; - nativeBuildInputs = [ pkg-config scons ]; - buildInputs = [ boost ladspaH ]; - - patchPhase = '' - # remove TERM: - sed -i -e '4d' SConstruct - sed -i 's@Options@Variables@g' SConstruct - sed -i "s@-fomit-frame-pointer -ffast-math -mfpmath=sse@-I ${boost.dev}/include@g" SConstruct - sed -i "s@env.has_key('cxx')@'cxx' in env@g" SConstruct - sed -i "s@ladspa.h@${ladspaH}/include/ladspa.h@g" filters.cpp - sed -i "s@LADSPA_HINT_SAMPLE_RATE, 0, 0.5@LADSPA_HINT_SAMPLE_RATE, 0.0001, 0.5@g" filters.cpp - sed -i "s/= check/= detail::filter_base<internal_type, checked>::check/" nova/source/dsp/filter.hpp + postPatch = '' + substituteInPlace SConstruct \ + --replace "'TERM' : os.environ['TERM']," "" \ + --replace "Options" "Variables" \ + --replace "-fomit-frame-pointer -ffast-math -mfpmath=sse" "-I${boost.dev}/include -I${ladspaH}/include" \ + --replace "env.has_key('cxx')" "True" \ + --replace "env['cxx']" "'${stdenv.cc.targetPrefix}c++'" \ + --replace "-Wl,--strip-all" "${lib.optionalString stdenv.isDarwin "-L${libcxxabi}/lib"}" + + substituteInPlace filters.cpp \ + --replace "LADSPA_HINT_SAMPLE_RATE, 0, 0.5" "LADSPA_HINT_SAMPLE_RATE, 0.0001, 0.5" + + substituteInPlace nova/source/dsp/filter.hpp \ + --replace "= check" "= detail::filter_base<internal_type, checked>::check" + + substituteInPlace nova/source/primitives/float.hpp \ + --replace "boost/detail/endian.hpp" "boost/predef/other/endian.h" \ + --replace "BOOST_LITTLE_ENDIAN" "BOOST_ENDIAN_LITTLE_BYTE" ''; + nativeBuildInputs = [ + scons + ]; + meta = with lib; { description = "LADSPA plugins based on filters of nova"; homepage = "http://klingt.org/~tim/nova-filters/"; license = licenses.gpl2Plus; maintainers = [ maintainers.magnetophon ]; - platforms = platforms.linux; + platforms = platforms.unix; }; -} +}) diff --git a/pkgs/applications/audio/picard/default.nix b/pkgs/applications/audio/picard/default.nix index 4e7323b128b37..983457530ad14 100644 --- a/pkgs/applications/audio/picard/default.nix +++ b/pkgs/applications/audio/picard/default.nix @@ -1,7 +1,6 @@ { lib , python3Packages , fetchFromGitHub -, fetchpatch , gettext , chromaprint , qt5 @@ -28,16 +27,22 @@ pythonPackages.buildPythonApplication rec { sha256 = "sha256-ukqlAXGaqX89U77cM9Ux0RYquT31Ho8ri1Ue7S3+MwQ="; }; - nativeBuildInputs = [ gettext qt5.wrapQtAppsHook qt5.qtbase ] - ++ lib.optionals (pyqt5.multimediaEnabled) [ - qt5.qtmultimedia.bin + nativeBuildInputs = [ + gettext + qt5.wrapQtAppsHook + ] ++ lib.optionals (pyqt5.multimediaEnabled) [ gst_all_1.gst-libav gst_all_1.gst-plugins-base gst_all_1.gst-plugins-good gst_all_1.gst-vaapi gst_all_1.gstreamer - ] - ; + ]; + buildInputs = [ + qt5.qtbase + qt5.qtwayland + ] ++ lib.optionals (pyqt5.multimediaEnabled) [ + qt5.qtmultimedia.bin + ]; propagatedBuildInputs = with pythonPackages; [ chromaprint diff --git a/pkgs/applications/audio/qmidiarp/default.nix b/pkgs/applications/audio/qmidiarp/default.nix index b2c22a66a8590..4c2de70efc0f1 100644 --- a/pkgs/applications/audio/qmidiarp/default.nix +++ b/pkgs/applications/audio/qmidiarp/default.nix @@ -10,11 +10,11 @@ stdenv.mkDerivation rec { pname = "qmidiarp"; - version = "0.6.7"; + version = "0.7.0"; src = fetchgit { url = "https://git.code.sf.net/p/qmidiarp/code"; - sha256 = "sha256-CxElnyREXLR086xYxCQTHZumrLP52CDYvv+ougKqJz0="; + sha256 = "sha256-oUdgff2xsXTis+C2Blv0tspWNIMGSODrKxWDpMDYnEU="; rev = "qmidiarp-${version}"; }; diff --git a/pkgs/applications/audio/reaper/default.nix b/pkgs/applications/audio/reaper/default.nix index 68393ad87ad59..ef0c514bce9f4 100644 --- a/pkgs/applications/audio/reaper/default.nix +++ b/pkgs/applications/audio/reaper/default.nix @@ -25,13 +25,13 @@ let in stdenv.mkDerivation rec { pname = "reaper"; - version = "6.79"; + version = "6.80"; src = fetchurl { url = url_for_platform version stdenv.hostPlatform.qemuArch; hash = { - x86_64-linux = "sha256-Bpsc09y5R/zyVXiDAqRF6n09qKOrBTLjk84z+noeko0="; - aarch64-linux = "sha256-jbyXXeVtFmt7xoIWd4YKFu4AUM6W9LzeIiGoGyaO2lU="; + x86_64-linux = "sha256-By97OxGC9YO7yEHzSjDAZHCtVaub1wNwWMOn4F+Qzpg="; + aarch64-linux = "sha256-11DiFfqULIi4tespho+yOH+Qy4s+lithCt19kb4RfhI="; }.${stdenv.hostPlatform.system}; }; diff --git a/pkgs/applications/audio/sonic-pi/default.nix b/pkgs/applications/audio/sonic-pi/default.nix index 89ef9d848148b..1d288f049b784 100644 --- a/pkgs/applications/audio/sonic-pi/default.nix +++ b/pkgs/applications/audio/sonic-pi/default.nix @@ -53,7 +53,7 @@ stdenv.mkDerivation rec { pname = "mix-deps-${pname}"; mixEnv = "test"; src = "${src}/app/server/beam/tau"; - sha256 = "sha256-MvwUyVTS23vQKLpGxz46tEVCs/OyYk5dDaBlv+kYg1M="; + hash = "sha256-MvwUyVTS23vQKLpGxz46tEVCs/OyYk5dDaBlv+kYg1M="; }; strictDeps = true; diff --git a/pkgs/applications/audio/spotify-player/default.nix b/pkgs/applications/audio/spotify-player/default.nix index 442cbc3112430..0e75f373dc2c8 100644 --- a/pkgs/applications/audio/spotify-player/default.nix +++ b/pkgs/applications/audio/spotify-player/default.nix @@ -7,20 +7,21 @@ , alsa-lib , dbus , fontconfig +, libsixel }: rustPlatform.buildRustPackage rec { pname = "spotify-player"; - version = "0.13.1"; + version = "0.14.1"; src = fetchFromGitHub { owner = "aome510"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-c+CbIDg4WlzRStiA+yBkjfSmMJ183tLBGiK340bZgnA="; + hash = "sha256-+YPtu3hsKvk2KskVSpqcFufnWL5PxN8+xbkcz/JXW6g="; }; - cargoHash = "sha256-nhRXFxSrzkq3SdJ4ZmWlKl7SwxwOz6ZYboIsBmgdFJ8="; + cargoHash = "sha256-WgQ+v9dJyriqq7+WpXpPhjdwm2Sr0jozA1oW2inSPik="; nativeBuildInputs = [ pkg-config @@ -32,6 +33,7 @@ rustPlatform.buildRustPackage rec { alsa-lib dbus fontconfig + libsixel ]; buildNoDefaultFeatures = true; @@ -41,6 +43,10 @@ rustPlatform.buildRustPackage rec { "media-control" "image" "lyric-finder" + "daemon" + "notify" + "streaming" + "sixel" ]; meta = with lib; { diff --git a/pkgs/applications/audio/subtitlr/default.nix b/pkgs/applications/audio/subtitlr/default.nix new file mode 100644 index 0000000000000..2832a96615126 --- /dev/null +++ b/pkgs/applications/audio/subtitlr/default.nix @@ -0,0 +1,35 @@ +{ lib, buildGoModule, fetchFromGitHub, installShellFiles }: + +buildGoModule rec { + pname = "Subtitlr"; + version = "0.1.1"; + + src = fetchFromGitHub { + owner = "yoanbernabeu"; + repo = pname; + rev = version; + hash = "sha256-1EjOpWVTp7CqwqSJAhqicvY2crzw1n7Id+TIwYrSQAs="; + }; + + vendorHash = "sha256-ZgJCk9vbbQ0dcYSdKm0Cbw2AmwjpMvGb5zJkgbD+xig="; + + ldflags = [ "-s" "-w" ]; + + nativeBuildInputs = [ + installShellFiles + ]; + + postInstall = '' + installShellCompletion --cmd Subtitlr \ + --bash <($out/bin/Subtitlr completion bash) \ + --fish <($out/bin/Subtitlr completion fish) \ + --zsh <($out/bin/Subtitlr completion zsh) + ''; + + meta = with lib; { + description = "This application, a subtitle generator for YouTube, utilizes OpenAI's Whisper API."; + homepage = "https://github.com/yoanbernabeu/Subtitlr/"; + license = licenses.mit; + maintainers = with maintainers; [ qjoly ]; + }; +} diff --git a/pkgs/applications/audio/tetraproc/default.nix b/pkgs/applications/audio/tetraproc/default.nix index b5012029480e9..806f01dc12175 100644 --- a/pkgs/applications/audio/tetraproc/default.nix +++ b/pkgs/applications/audio/tetraproc/default.nix @@ -29,7 +29,7 @@ stdenv.mkDerivation rec { ''; postInstall = '' - # Make sure Jack is avalable in $PATH for tetraproc + # Make sure Jack is available in $PATH for tetraproc wrapProgram $out/bin/tetraproc --prefix PATH : "${jack2}/bin" ''; diff --git a/pkgs/applications/audio/vkeybd/default.nix b/pkgs/applications/audio/vkeybd/default.nix index ec6391562174a..642a75f71f2f5 100644 --- a/pkgs/applications/audio/vkeybd/default.nix +++ b/pkgs/applications/audio/vkeybd/default.nix @@ -19,10 +19,6 @@ stdenv.mkDerivation rec { makeFlags = [ "TKLIB=-l${tk.libPrefix}" "TCLLIB=-l${tcl.libPrefix}" ]; - postInstall = '' - wrapProgram $out/bin/vkeybd --set TK_LIBRARY "${tk}/lib/${tk.libPrefix}" - ''; - meta = with lib; { description = "Virtual MIDI keyboard"; homepage = "https://www.alsa-project.org/~tiwai/alsa.html"; diff --git a/pkgs/applications/audio/yoshimi/default.nix b/pkgs/applications/audio/yoshimi/default.nix index 52e0b7f24c3e3..bcf81c8c81eac 100644 --- a/pkgs/applications/audio/yoshimi/default.nix +++ b/pkgs/applications/audio/yoshimi/default.nix @@ -22,13 +22,13 @@ stdenv.mkDerivation rec { pname = "yoshimi"; - version = "2.2.3"; + version = "2.3.0"; src = fetchFromGitHub { owner = "Yoshimi"; repo = pname; rev = version; - hash = "sha256-zVIOHm84wx6ZFK0seS9fWZfujDz259AXTv7zljbwrUk="; + hash = "sha256-rVlwOxp8C/A56JDd6Bzi2smblJVqQWZiFqIP4oRhElM="; }; sourceRoot = "source/src"; diff --git a/pkgs/applications/blockchains/besu/default.nix b/pkgs/applications/blockchains/besu/default.nix index 183dbc9f33889..03ca6717f6ff9 100644 --- a/pkgs/applications/blockchains/besu/default.nix +++ b/pkgs/applications/blockchains/besu/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "besu"; - version = "23.1.2"; + version = "23.4.0"; src = fetchurl { url = "https://hyperledger.jfrog.io/artifactory/${pname}-binaries/${pname}/${version}/${pname}-${version}.tar.gz"; - sha256 = "sha256-PTpwmjqrmToIAbQSpHGddOMZ+ULdwT+w8ws8SlTRJTg="; + sha256 = "sha256-ghaVsyVcn2RvTVJ+N0IZyWQW9JgjFSDy7sK+vtxT9aA="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/applications/blockchains/btcpayserver/default.nix b/pkgs/applications/blockchains/btcpayserver/default.nix index ca097b1de88cd..3d63ba4858c04 100644 --- a/pkgs/applications/blockchains/btcpayserver/default.nix +++ b/pkgs/applications/blockchains/btcpayserver/default.nix @@ -6,13 +6,13 @@ buildDotnetModule rec { pname = "btcpayserver"; - version = "1.9.3"; + version = "1.10.1"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "sha256-XcpPdlDpY/RXOK8ykZ/UUVOok2Pz3vObdp4zhy9tt7w="; + sha256 = "sha256-3FbrNSwVNrxf++7C23XSWmeTfTRP56/7QeQOlggVpao="; }; projectFile = "BTCPayServer/BTCPayServer.csproj"; diff --git a/pkgs/applications/blockchains/btcpayserver/deps.nix b/pkgs/applications/blockchains/btcpayserver/deps.nix index cdd0b9ebbb00b..ac03ab8306c8c 100644 --- a/pkgs/applications/blockchains/btcpayserver/deps.nix +++ b/pkgs/applications/blockchains/btcpayserver/deps.nix @@ -8,14 +8,14 @@ (fetchNuGet { pname = "AWSSDK.S3"; version = "3.3.110.10"; sha256 = "1lf1hfbx792dpa1hxgn0a0jrrvldd16hgbxx229dk2qcz5qlnc38"; }) (fetchNuGet { pname = "BIP78.Sender"; version = "0.2.2"; sha256 = "12pm2s35c0qzc06099q2z1pxwq94rq85n74yz8fs8gwvm2ksgp4p"; }) (fetchNuGet { pname = "BTCPayServer.Hwi"; version = "2.0.2"; sha256 = "0lh3n1qncqs4kbrmx65xs271f0d9c7irrs9qnsa9q51cbbqbljh9"; }) - (fetchNuGet { pname = "BTCPayServer.Lightning.All"; version = "1.4.23"; sha256 = "11nb7ba93g51n5f5aa6sd6s3f9x82g1vbi8rcj04x5anbh2g451n"; }) + (fetchNuGet { pname = "BTCPayServer.Lightning.All"; version = "1.4.26"; sha256 = "1mssifz3jhvk3cqpb3kiqzlsyirlxzj90mlkigdnqqxfk7fyv6wv"; }) (fetchNuGet { pname = "BTCPayServer.Lightning.Charge"; version = "1.3.20"; sha256 = "0nk82hkgs67mxfxkgbav8yxxd79m0xyqaan7vay00gg33pjqdjvj"; }) - (fetchNuGet { pname = "BTCPayServer.Lightning.CLightning"; version = "1.3.26"; sha256 = "0sbcl1jdpjgjpa4cagcrppk124nkk2hxsvlj8nr6zf3fcdwllagj"; }) + (fetchNuGet { pname = "BTCPayServer.Lightning.CLightning"; version = "1.3.27"; sha256 = "14bgi3p31v8ypf1lqnc5xkpzfd2cj5a23v2wv1m38jl6ng2v6vqp"; }) (fetchNuGet { pname = "BTCPayServer.Lightning.Common"; version = "1.3.16"; sha256 = "1g37736b4k0ncpyy2qycbk4l85fqvgwac3k98nbdj0dvhfghp1dn"; }) (fetchNuGet { pname = "BTCPayServer.Lightning.Common"; version = "1.3.21"; sha256 = "042xwfsxd30zgwiz0w14ynb755w5sldkplxgw1fkw68lrz66x5s4"; }) (fetchNuGet { pname = "BTCPayServer.Lightning.Eclair"; version = "1.3.20"; sha256 = "093w82mcxxxbvx66j0sp3lsfm2bkbi3igm80iz9zdghy85845kc9"; }) - (fetchNuGet { pname = "BTCPayServer.Lightning.LNBank"; version = "1.3.24"; sha256 = "0dah7q90x29rqhngxd9226pfn1k4bbhhfgnkpjpw64529m29cdks"; }) - (fetchNuGet { pname = "BTCPayServer.Lightning.LND"; version = "1.4.15"; sha256 = "18qnpdxbz359ygygllsrf95fbalsfyjrf6j9wi7c8qd39jwcignx"; }) + (fetchNuGet { pname = "BTCPayServer.Lightning.LNBank"; version = "1.3.26"; sha256 = "1kfl88psjbsh88l98kc6dyxqjghnzyffi070v2ifkdjcdgdbawfs"; }) + (fetchNuGet { pname = "BTCPayServer.Lightning.LND"; version = "1.4.16"; sha256 = "1m3nb23f6c6ms2mm07sii4hkrv7illzfg32cjy2j3h6myynw1ik5"; }) (fetchNuGet { pname = "BTCPayServer.Lightning.LNDhub"; version = "1.0.19"; sha256 = "164c5nmsqzgz9v6fw0ml0d9m5hcp449468giakv3cihq25cd6giz"; }) (fetchNuGet { pname = "BTCPayServer.NETCore.Plugins"; version = "1.4.4"; sha256 = "0rk0prmb0539ji5fd33cqy3yvw51i5i8m5hb43admr5z8960dd6l"; }) (fetchNuGet { pname = "BTCPayServer.NETCore.Plugins.Mvc"; version = "1.4.4"; sha256 = "1kmmj5m7s41wc1akpqw1b1j7pp4c0vn6sqxb487980ibpj6hyisl"; }) @@ -158,9 +158,10 @@ (fetchNuGet { pname = "NBitcoin"; version = "6.0.8"; sha256 = "1f90zyrd35fzx0vgvd83jhd6hczd4037h2k198xiyxj04l4m3wm5"; }) (fetchNuGet { pname = "NBitcoin"; version = "7.0.1"; sha256 = "05kqpjyp3ckb2183g9vfsdv362y5xg5j21p36zls0x3b0jgrwxw7"; }) (fetchNuGet { pname = "NBitcoin"; version = "7.0.24"; sha256 = "0yc6cgwp2xr2dzjsrkawyh43whixv66nvvq6rh1pi6gi14iaqmfa"; }) - (fetchNuGet { pname = "NBitcoin.Altcoins"; version = "3.0.18"; sha256 = "054i15qan5154iy8m13jmhnz1w5rs208i1xhlfnivwiq2v1c2qby"; }) + (fetchNuGet { pname = "NBitcoin"; version = "7.0.26"; sha256 = "0m50dmx7hhbxxgwpl9cxrbihpg9l10pga58b41vb0fima2y137zs"; }) + (fetchNuGet { pname = "NBitcoin.Altcoins"; version = "3.0.19"; sha256 = "16bv3314flq6ildsjzxzw4ih2wbryvkjpkcwkvf2lh2smqhnvr11"; }) (fetchNuGet { pname = "NBitpayClient"; version = "1.0.0.39"; sha256 = "1sgwradg7jnb4n3chwqfkximj1qhgl3r23p0sifmaa0kql2hlira"; }) - (fetchNuGet { pname = "NBXplorer.Client"; version = "4.2.3"; sha256 = "0lf5qsf5yr5m1fx826mn47l237x5y2wkimv6klc3rvwwc7f10dmm"; }) + (fetchNuGet { pname = "NBXplorer.Client"; version = "4.2.5"; sha256 = "0kycvnxgqrkxig8k6mp1897sqbq2xarc8429vnjh79644nakdas4"; }) (fetchNuGet { pname = "NETStandard.Library"; version = "1.6.1"; sha256 = "1z70wvsx2d847a2cjfii7b83pjfs34q05gb037fdjikv5kbagml8"; }) (fetchNuGet { pname = "Newtonsoft.Json"; version = "13.0.1"; sha256 = "0fijg0w6iwap8gvzyjnndds0q4b8anwxxvik7y8vgq97dram4srb"; }) (fetchNuGet { pname = "Newtonsoft.Json.Bson"; version = "1.0.1"; sha256 = "1r1hvj5gjl466bya2bfl5aaj8rbwyf5x1msg710wf3k2llbci1xa"; }) diff --git a/pkgs/applications/blockchains/exodus/default.nix b/pkgs/applications/blockchains/exodus/default.nix index 22981064a1cb1..c85008cbcffc1 100644 --- a/pkgs/applications/blockchains/exodus/default.nix +++ b/pkgs/applications/blockchains/exodus/default.nix @@ -4,11 +4,11 @@ cups, vivaldi-ffmpeg-codecs, libpulseaudio, at-spi2-core, libxkbcommon, mesa }: stdenv.mkDerivation rec { pname = "exodus"; - version = "23.5.8"; + version = "23.5.22"; src = fetchzip { url = "https://downloads.exodus.com/releases/${pname}-linux-x64-${version}.zip"; - sha256 = "sha256-3mABHkxEMS985NqQBZ7HijtTiun1iSXFJmi0qOh3m7g="; + sha256 = "sha256-CZuT0nlKyF7LRGqNezm98MHcQa2Uhd8y+NiKE5mi0jk="; }; installPhase = '' diff --git a/pkgs/applications/blockchains/ledger-live-desktop/default.nix b/pkgs/applications/blockchains/ledger-live-desktop/default.nix index d2f360e97a1df..8531456a73d36 100644 --- a/pkgs/applications/blockchains/ledger-live-desktop/default.nix +++ b/pkgs/applications/blockchains/ledger-live-desktop/default.nix @@ -2,11 +2,11 @@ let pname = "ledger-live-desktop"; - version = "2.58.0"; + version = "2.60.0"; src = fetchurl { url = "https://download.live.ledger.com/${pname}-${version}-linux-x86_64.AppImage"; - hash = "sha256-y9D+RKAB/woYmnu8X0armsVaxu0CWbqZpRiEFcN7rYM="; + hash = "sha256-dR6F6elUxZW3EuH71d5P9SOSDq5f5lAsYnrfWrsj2KA="; }; appimageContents = appimageTools.extractType2 { @@ -30,7 +30,7 @@ appimageTools.wrapType2 rec { description = "App for Ledger hardware wallets"; homepage = "https://www.ledger.com/ledger-live/"; license = licenses.mit; - maintainers = with maintainers; [ andresilva thedavidmeister nyanloutre RaghavSood th0rgal WeebSorceress ]; + maintainers = with maintainers; [ andresilva thedavidmeister nyanloutre RaghavSood th0rgal ]; platforms = [ "x86_64-linux" ]; }; } diff --git a/pkgs/applications/blockchains/lightning-loop/default.nix b/pkgs/applications/blockchains/lightning-loop/default.nix index be131295f8eda..3dc1356c90cb0 100644 --- a/pkgs/applications/blockchains/lightning-loop/default.nix +++ b/pkgs/applications/blockchains/lightning-loop/default.nix @@ -5,19 +5,21 @@ buildGoModule rec { pname = "lightning-loop"; - version = "0.23.0-beta"; + version = "0.24.1-beta"; src = fetchFromGitHub { owner = "lightninglabs"; repo = "loop"; rev = "v${version}"; - sha256 = "sha256-nYDu451BS5gV4pbV9Pp+S7oKsLGzgVu1a9Df7651e4c="; + hash = "sha256-gPWiKSwXS1eSuHss+hkiqqxqonGYSGmSh3/jL+NlqEg="; }; - vendorSha256 = "sha256-6bRg6is1g/eRCr82tHMXTWVFv2S0d2h/J3w1gpentjo="; + vendorHash = "sha256-6bRg6is1g/eRCr82tHMXTWVFv2S0d2h/J3w1gpentjo="; subPackages = [ "cmd/loop" "cmd/loopd" ]; + ldflags = [ "-s" "-w" ]; + meta = with lib; { description = "Lightning Loop Client"; homepage = "https://github.com/lightninglabs/loop"; diff --git a/pkgs/applications/blockchains/litecoin/default.nix b/pkgs/applications/blockchains/litecoin/default.nix index 378ae2f2efeb5..85436f6023a6f 100644 --- a/pkgs/applications/blockchains/litecoin/default.nix +++ b/pkgs/applications/blockchains/litecoin/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, mkDerivation, fetchFromGitHub +{ lib, stdenv, mkDerivation, fetchFromGitHub, fetchpatch , pkg-config, autoreconfHook , openssl, db48, boost, zlib, miniupnpc , glib, protobuf, util-linux, qrencode @@ -20,6 +20,14 @@ mkDerivation rec { sha256 = "sha256-TuDc47TZOEQA5Lr4DQkEhnO/Szp9h71xPjaBL3jFWuM="; }; + patches = [ + (fetchpatch { + name = "boost1770.patch"; + url = "https://aur.archlinux.org/cgit/aur.git/plain/boost1770.patch?h=litecoin-qt&id=dc75ad854af123f375b5b683be64aa14573170d7"; + hash = "sha256-PTkYQRA8n5a9yR2AvpzH5natsXT2W6Xjo0ONCPJx78k="; + }) + ]; + nativeBuildInputs = [ pkg-config autoreconfHook ]; buildInputs = [ openssl db48 boost zlib zeromq fmt miniupnpc glib protobuf util-linux libevent ] diff --git a/pkgs/applications/blockchains/nbxplorer/default.nix b/pkgs/applications/blockchains/nbxplorer/default.nix index 49f8779f5115a..6bd443e428b50 100644 --- a/pkgs/applications/blockchains/nbxplorer/default.nix +++ b/pkgs/applications/blockchains/nbxplorer/default.nix @@ -6,13 +6,13 @@ buildDotnetModule rec { pname = "nbxplorer"; - version = "2.3.63"; + version = "2.3.65"; src = fetchFromGitHub { owner = "dgarage"; repo = "NBXplorer"; rev = "v${version}"; - sha256 = "sha256-K3dlXwzKNzwJstp1DW5T5s5Gs0ebPNWXtzqr3rw5294="; + sha256 = "sha256-7m9gf+enOtE5VWuBNLFf11ofLGBRAYWvmkrekUVQQaQ="; }; projectFile = "NBXplorer/NBXplorer.csproj"; diff --git a/pkgs/applications/blockchains/solana-validator/default.nix b/pkgs/applications/blockchains/solana-validator/default.nix index c0d7926129d21..897968e25063e 100644 --- a/pkgs/applications/blockchains/solana-validator/default.nix +++ b/pkgs/applications/blockchains/solana-validator/default.nix @@ -4,15 +4,10 @@ , fetchFromGitHub , lib , rustPlatform -, IOKit -, Security -, AppKit , pkg-config , udev , zlib , protobuf -, clang -, llvm , openssl , libclang , rustfmt @@ -63,7 +58,6 @@ rustPlatform.buildRustPackage rec { # partly inspired by https://github.com/obsidiansystems/solana-bridges/blob/develop/default.nix#L29 inherit cargoSha256; - verifyCargoDeps = true; cargoBuildFlags = builtins.map (n: "--bin=${n}") solanaPkgs; diff --git a/pkgs/applications/blockchains/solana/default.nix b/pkgs/applications/blockchains/solana/default.nix index b21e945b1aedf..698bc697d6975 100644 --- a/pkgs/applications/blockchains/solana/default.nix +++ b/pkgs/applications/blockchains/solana/default.nix @@ -60,7 +60,6 @@ rustPlatform.buildRustPackage rec { }; strictDeps = true; - verifyCargoDeps = true; cargoBuildFlags = builtins.map (n: "--bin=${n}") solanaPkgs; # Even tho the tests work, a shit ton of them try to connect to a local RPC diff --git a/pkgs/applications/blockchains/stellar-core/default.nix b/pkgs/applications/blockchains/stellar-core/default.nix index 001bc4a537fa8..72b1c691c5816 100644 --- a/pkgs/applications/blockchains/stellar-core/default.nix +++ b/pkgs/applications/blockchains/stellar-core/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { pname = "stellar-core"; - version = "19.10.0"; + version = "19.11.0"; src = fetchFromGitHub { owner = "stellar"; repo = pname; rev = "v${version}"; - sha256 = "sha256-BcZsj2TbeJW91aiZ2I7NbDa+rgjfs6lQUsWOnhFQXtw="; + sha256 = "sha256-48fEVbK5yswPkTwlfemXB2ieAs2+SIM6dspqOBiRKCU="; fetchSubmodules = true; }; diff --git a/pkgs/applications/editors/android-studio/default.nix b/pkgs/applications/editors/android-studio/default.nix index c7369d56178d3..38f2f63852b9a 100644 --- a/pkgs/applications/editors/android-studio/default.nix +++ b/pkgs/applications/editors/android-studio/default.nix @@ -10,8 +10,8 @@ let inherit tiling_wm; }; stableVersion = { - version = "2022.2.1.19"; # "Android Studio Flamingo (2022.2.1) Patch 1" - sha256Hash = "sha256-bAtPlJI3RwqQX6xpEi7S8T2IDc/39MONU3iFpfi8v3A="; + version = "2022.2.1.20"; # "Android Studio Flamingo (2022.2.1) Patch 2" + sha256Hash = "sha256-X+ZuH4cHKfQtfvOF0kLk+QjQ5AR3pTEparczHEUk+uY="; }; betaVersion = { version = "2022.3.1.12"; # "Android Studio Giraffe (2022.3.1) Beta 1" diff --git a/pkgs/applications/editors/cudatext/default.nix b/pkgs/applications/editors/cudatext/default.nix index 292156ef54837..ec7d4e249765e 100644 --- a/pkgs/applications/editors/cudatext/default.nix +++ b/pkgs/applications/editors/cudatext/default.nix @@ -38,13 +38,13 @@ let in stdenv.mkDerivation rec { pname = "cudatext"; - version = "1.194.4"; + version = "1.195.0"; src = fetchFromGitHub { owner = "Alexey-T"; repo = "CudaText"; rev = version; - hash = "sha256-suZROvrbi02jRnueoet2wT2+dxNuWgv8X6tIvlOPHPI="; + hash = "sha256-7KAT7rWq4jjSz/oxw8K+WrWwJWf0Dq8cR0oyHtA4R9g="; }; postPatch = '' diff --git a/pkgs/applications/editors/cudatext/deps.json b/pkgs/applications/editors/cudatext/deps.json index d2cf2fc59a1ec..763a29a503a0e 100644 --- a/pkgs/applications/editors/cudatext/deps.json +++ b/pkgs/applications/editors/cudatext/deps.json @@ -1,8 +1,8 @@ { "EncConv": { "owner": "Alexey-T", - "rev": "2023.01.02", - "hash": "sha256-4/ih4sBDel2wm+YFpNcwHoOrK8AgHe3Jbqxl+CYrQFM=" + "rev": "2023.04.16", + "hash": "sha256-6KaYv4OO6Ctk+vgow67LKGkbEEd1+lFJ9B1wSk4m3pc=" }, "ATBinHex-Lazarus": { "owner": "Alexey-T", @@ -11,33 +11,33 @@ }, "ATFlatControls": { "owner": "Alexey-T", - "rev": "2023.05.17", - "hash": "sha256-yt5i3txXqHs7MoQepY+tbzv1wxwAegm9C+rWZtxJ4zE=" + "rev": "2023.05.31", + "hash": "sha256-/CN6wa5XN5ERdFnqOXxxtT08ObtlToqe3YsLpiog40w=" }, "ATSynEdit": { "owner": "Alexey-T", - "rev": "2023.05.17", - "hash": "sha256-6hz1oOnappiXktvvEBWXsaI/hnJ9mbnS5hWnyCVN2Ys=" + "rev": "2023.05.31", + "hash": "sha256-N+ypCg9Tmg+/Y7KMXTZR4aiRqbsHZwKIUidVPthEJvI=" }, "ATSynEdit_Cmp": { "owner": "Alexey-T", - "rev": "2023.05.12", - "hash": "sha256-/BAWc5RR7hZCNjyuLqiq9OdJxvRqliMWiC7o0tCtELY=" + "rev": "2023.05.31", + "hash": "sha256-QXu/p3o0RSwMyntFYrjIQBtOBGvL9rAsINaglG3fZvo=" }, "EControl": { "owner": "Alexey-T", - "rev": "2023.05.17", - "hash": "sha256-tzQEL23k7ZhnOxN9IOD0lG/2FNOdjuS8vP+0f6IU8Ks=" + "rev": "2023.05.31", + "hash": "sha256-sejyNiPmTboP6HlXao+RaMaEf67tAv4mXDHVkkMErPE=" }, "ATSynEdit_Ex": { "owner": "Alexey-T", - "rev": "2023.05.12", - "hash": "sha256-Y+F/pdPzmXqqCqB0TCOboA4md/2QMHhzlVxR5NJF3+0=" + "rev": "2023.05.31", + "hash": "sha256-z0RGk0/oWTPpp/VSM4PBPLWIIQ5cVkQXlQyciW++SH0=" }, "Python-for-Lazarus": { "owner": "Alexey-T", - "rev": "2023.01.02", - "hash": "sha256-NnPrQAqmKg3Lh16Qp/LZVS4JRtAxXi3qRovLTbzUyYQ=" + "rev": "2023.05.15", + "hash": "sha256-8dWitKZB4nLcJ3fIN40jfNnyAGcRPLfA0iKNZ0zWFWo=" }, "Emmet-Pascal": { "owner": "Alexey-T", @@ -51,7 +51,7 @@ }, "bgrabitmap": { "owner": "bgrabitmap", - "rev": "v11.5.3", - "hash": "sha256-qjBD9TVZQy1tKWHFWkuu6vdLjASzQb3+HRy0FLdd9a8=" + "rev": "v11.5.4", + "hash": "sha256-Js7MQ1JYAl2cpnjgDOXeLcWBCrjjCnDORayRpSFoFhM=" } } diff --git a/pkgs/applications/editors/emacs/28.nix b/pkgs/applications/editors/emacs/28.nix deleted file mode 100644 index b6abb4c4cdb57..0000000000000 --- a/pkgs/applications/editors/emacs/28.nix +++ /dev/null @@ -1,4 +0,0 @@ -import ./generic.nix (rec { - version = "28.2"; - sha256 = "sha256-4oSLcUDR0MOEt53QOiZSVU8kPJ67GwugmBxdX3F15Ag="; -}) diff --git a/pkgs/applications/editors/emacs/default.nix b/pkgs/applications/editors/emacs/default.nix new file mode 100644 index 0000000000000..b2edc85970131 --- /dev/null +++ b/pkgs/applications/editors/emacs/default.nix @@ -0,0 +1,65 @@ +{ lib, pkgs }: + +lib.makeScope pkgs.newScope (self: + let + gconf = pkgs.gnome2.GConf; + inherit (self) callPackage; + in { + sources = import ./sources.nix { + inherit lib; + inherit (pkgs) + fetchFromBitbucket + fetchFromSavannah; + }; + + emacs28 = callPackage (self.sources.emacs28) { + inherit gconf; + + inherit (pkgs.darwin) sigtool; + inherit (pkgs.darwin.apple_sdk.frameworks) + AppKit Carbon Cocoa GSS ImageCaptureCore ImageIO IOKit OSAKit Quartz + QuartzCore WebKit; + }; + + emacs28-gtk2 = self.emacs28.override { + withGTK2 = true; + }; + + emacs28-gtk3 = self.emacs28.override { + withGTK3 = true; + }; + + emacs28-nox = pkgs.lowPrio (self.emacs28.override { + noGui = true; + }); + + emacs29 = callPackage (self.sources.emacs29) { + inherit gconf; + + inherit (pkgs.darwin) sigtool; + inherit (pkgs.darwin.apple_sdk.frameworks) + AppKit Carbon Cocoa GSS ImageCaptureCore ImageIO IOKit OSAKit Quartz + QuartzCore WebKit; + }; + + emacs29-gtk3 = self.emacs29.override { + withGTK3 = true; + }; + + emacs29-nox = self.emacs29.override { + noGui = true; + }; + + emacs29-pgtk = self.emacs29.override { + withPgtk = true; + }; + + emacs-macport = callPackage (self.sources.emacs-macport) { + inherit gconf; + + inherit (pkgs.darwin) sigtool; + inherit (pkgs.darwin.apple_sdk.frameworks) + AppKit Carbon Cocoa GSS ImageCaptureCore ImageIO IOKit OSAKit Quartz + QuartzCore WebKit; + }; + }) diff --git a/pkgs/applications/editors/emacs/elisp-packages/elpa-devel-generated.nix b/pkgs/applications/editors/emacs/elisp-packages/elpa-devel-generated.nix new file mode 100644 index 0000000000000..0858b5f781af6 --- /dev/null +++ b/pkgs/applications/editors/emacs/elisp-packages/elpa-devel-generated.nix @@ -0,0 +1,6775 @@ +{ callPackage }: + { + ace-window = callPackage ({ avy + , elpaBuild + , fetchurl + , lib }: + elpaBuild { + pname = "ace-window"; + ename = "ace-window"; + version = "0.10.0.0.20220911.35841"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/ace-window-0.10.0.0.20220911.35841.tar"; + sha256 = "1q506qdi55rg2c9z3555klsqy5sxqpii11mx69l8x76a33a0j1f4"; + }; + packageRequires = [ avy ]; + meta = { + homepage = "https://elpa.gnu.org/packages/ace-window.html"; + license = lib.licenses.free; + }; + }) {}; + ack = callPackage ({ elpaBuild, fetchurl, lib }: + elpaBuild { + pname = "ack"; + ename = "ack"; + version = "1.11.0.20220924.84123"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/ack-1.11.0.20220924.84123.tar"; + sha256 = "1npl618r6g25mzkibj0x4l31kqws73w9aid6ichm0ql9mi6pry5m"; + }; + packageRequires = []; + meta = { + homepage = "https://elpa.gnu.org/packages/ack.html"; + license = lib.licenses.free; + }; + }) {}; + ada-mode = callPackage ({ elpaBuild + , emacs + , fetchurl + , gnat-compiler + , lib + , uniquify-files + , wisi }: + elpaBuild { + pname = "ada-mode"; + ename = "ada-mode"; + version = "8.0.5.0.20230208.70712"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/ada-mode-8.0.5.0.20230208.70712.tar"; + sha256 = "1957w6fynk345iwhgc4iq7zlda3fi211r7vi5420g761568wp4ca"; + }; + packageRequires = [ emacs gnat-compiler uniquify-files wisi ]; + meta = { + homepage = "https://elpa.gnu.org/packages/ada-mode.html"; + license = lib.licenses.free; + }; + }) {}; + ada-ref-man = callPackage ({ elpaBuild + , fetchurl + , lib }: + elpaBuild { + pname = "ada-ref-man"; + ename = "ada-ref-man"; + version = "2020.1.0.20201129.190419"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/ada-ref-man-2020.1.0.20201129.190419.tar"; + sha256 = "0pvlfgq4b2a4d7452b3y0ns3saq8497fq9m62pi4ylqnqwjkfy61"; + }; + packageRequires = []; + meta = { + homepage = "https://elpa.gnu.org/packages/ada-ref-man.html"; + license = lib.licenses.free; + }; + }) {}; + adaptive-wrap = callPackage ({ elpaBuild + , fetchurl + , lib }: + elpaBuild { + pname = "adaptive-wrap"; + ename = "adaptive-wrap"; + version = "0.8.0.20210602.91446"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/adaptive-wrap-0.8.0.20210602.91446.tar"; + sha256 = "1fm3bx1qyv1ridj6inzr8qyw2fzj6fzcrzf57zs2lsfkvj7b5knd"; + }; + packageRequires = []; + meta = { + homepage = "https://elpa.gnu.org/packages/adaptive-wrap.html"; + license = lib.licenses.free; + }; + }) {}; + adjust-parens = callPackage ({ elpaBuild + , fetchurl + , lib }: + elpaBuild { + pname = "adjust-parens"; + ename = "adjust-parens"; + version = "3.1.0.20221221.73810"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/adjust-parens-3.1.0.20221221.73810.tar"; + sha256 = "1p56b0pkyw6csl3wy1gi3ys2jzlm867bw3ca04ssm6l1lypirhg8"; + }; + packageRequires = []; + meta = { + homepage = "https://elpa.gnu.org/packages/adjust-parens.html"; + license = lib.licenses.free; + }; + }) {}; + advice-patch = callPackage ({ elpaBuild + , emacs + , fetchurl + , lib }: + elpaBuild { + pname = "advice-patch"; + ename = "advice-patch"; + version = "0.1.0.20201220.233221"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/advice-patch-0.1.0.20201220.233221.tar"; + sha256 = "09ivqir4b5rr1h7mc5g9czr5d9iig10zxvwjnnx12qzqaqwz2yvr"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/advice-patch.html"; + license = lib.licenses.free; + }; + }) {}; + aggressive-completion = callPackage ({ elpaBuild + , emacs + , fetchurl + , lib }: + elpaBuild { + pname = "aggressive-completion"; + ename = "aggressive-completion"; + version = "1.7.0.20220417.71805"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/aggressive-completion-1.7.0.20220417.71805.tar"; + sha256 = "0kizmb64l0dbrgyj0wzbpdxpyr060myval62y5i88an74fvjli60"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/aggressive-completion.html"; + license = lib.licenses.free; + }; + }) {}; + aggressive-indent = callPackage ({ elpaBuild + , emacs + , fetchurl + , lib }: + elpaBuild { + pname = "aggressive-indent"; + ename = "aggressive-indent"; + version = "1.10.0.0.20230112.100030"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/aggressive-indent-1.10.0.0.20230112.100030.tar"; + sha256 = "0jjai48mf0j8b9dcxi9rlrpcpbz2cm2y6iqbi2f7q8012166hvgs"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/aggressive-indent.html"; + license = lib.licenses.free; + }; + }) {}; + agitate = callPackage ({ elpaBuild, emacs, fetchurl, lib }: + elpaBuild { + pname = "agitate"; + ename = "agitate"; + version = "0.0.20230101.152816"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/agitate-0.0.20230101.152816.tar"; + sha256 = "0a8xgi19b5zc585mmr23dfif2zfbwgdhybrvk5nkc8lc2ifmnf60"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/agitate.html"; + license = lib.licenses.free; + }; + }) {}; + ahungry-theme = callPackage ({ elpaBuild + , emacs + , fetchurl + , lib }: + elpaBuild { + pname = "ahungry-theme"; + ename = "ahungry-theme"; + version = "1.10.0.0.20211231.115425"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/ahungry-theme-1.10.0.0.20211231.115425.tar"; + sha256 = "0irq26pxgv31ak0wrwy1smhfazsc3nvn99ki3zq21h1d31i2xhcr"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/ahungry-theme.html"; + license = lib.licenses.free; + }; + }) {}; + aircon-theme = callPackage ({ elpaBuild + , emacs + , fetchurl + , lib }: + elpaBuild { + pname = "aircon-theme"; + ename = "aircon-theme"; + version = "0.0.6.0.20220827.93355"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/aircon-theme-0.0.6.0.20220827.93355.tar"; + sha256 = "0p2svw1db5km3ks2ywb38lsqh0y54ng8wgmh1s80mzvcflc8gia6"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/aircon-theme.html"; + license = lib.licenses.free; + }; + }) {}; + all = callPackage ({ elpaBuild, fetchurl, lib }: + elpaBuild { + pname = "all"; + ename = "all"; + version = "1.0.0.20221221.74133"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/all-1.0.0.20221221.74133.tar"; + sha256 = "0mg5fhfw8n33whx6yg969jwcxlqjgmxvfrh00mq31hzwhppjy293"; + }; + packageRequires = []; + meta = { + homepage = "https://elpa.gnu.org/packages/all.html"; + license = lib.licenses.free; + }; + }) {}; + altcaps = callPackage ({ elpaBuild + , emacs + , fetchurl + , lib }: + elpaBuild { + pname = "altcaps"; + ename = "altcaps"; + version = "1.1.0.0.20230101.152850"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/altcaps-1.1.0.0.20230101.152850.tar"; + sha256 = "112c8yv5vbz78j83qacv0d97lxmxyr7m3mk0l7hm7556424y5v3v"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/altcaps.html"; + license = lib.licenses.free; + }; + }) {}; + ampc = callPackage ({ elpaBuild, fetchurl, lib }: + elpaBuild { + pname = "ampc"; + ename = "ampc"; + version = "0.2.0.20221214.153219"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/ampc-0.2.0.20221214.153219.tar"; + sha256 = "1smb3217kz0dj495d0hy6zkin30xaba4a574d74va3hv0n5485lb"; + }; + packageRequires = []; + meta = { + homepage = "https://elpa.gnu.org/packages/ampc.html"; + license = lib.licenses.free; + }; + }) {}; + arbitools = callPackage ({ cl-lib ? null + , elpaBuild + , fetchurl + , lib }: + elpaBuild { + pname = "arbitools"; 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+ ename = "visual-filename-abbrev"; + version = "1.2.0.20221221.82606"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/visual-filename-abbrev-1.2.0.20221221.82606.tar"; + sha256 = "1jq6c1fzm6r73j6g2m7in6cly3pm9zyqldc67paqldalhg9kfda5"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/visual-filename-abbrev.html"; + license = lib.licenses.free; + }; + }) {}; + visual-fill = callPackage ({ elpaBuild + , fetchurl + , lib }: + elpaBuild { + pname = "visual-fill"; + ename = "visual-fill"; + version = "0.1.0.20201201.173845"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/visual-fill-0.1.0.20201201.173845.tar"; + sha256 = "10wf6w2mjmhj7blxh76j0k0czjv4ww307pa99vp9xgcg63pcbbp6"; + }; + packageRequires = []; + meta = { + homepage = "https://elpa.gnu.org/packages/visual-fill.html"; + license = lib.licenses.free; + }; + }) {}; + vlf = callPackage ({ elpaBuild, fetchurl, lib }: + elpaBuild { + pname = "vlf"; + ename = "vlf"; + version = "1.7.2.0.20201128.5141"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/vlf-1.7.2.0.20201128.5141.tar"; + sha256 = "12m43ykq92hfnq91z27sabzj7gbjpl624k7acpg641909hm5nq1b"; + }; + packageRequires = []; + meta = { + homepage = "https://elpa.gnu.org/packages/vlf.html"; + license = lib.licenses.free; + }; + }) {}; + vundo = callPackage ({ elpaBuild, emacs, fetchurl, lib }: + elpaBuild { + pname = "vundo"; + ename = "vundo"; + version = "2.1.0.0.20230510.170718"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/vundo-2.1.0.0.20230510.170718.tar"; + sha256 = "0q48bwaxz39w8gppsmr32rk04zh50cfz4g2rlxf5bkziqgja0yyl"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/vundo.html"; + license = lib.licenses.free; + }; + }) {}; + wcheck-mode = callPackage ({ elpaBuild + , fetchurl + , lib }: + elpaBuild { + pname = "wcheck-mode"; + ename = "wcheck-mode"; + version = "2021.0.20220101.81620"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/wcheck-mode-2021.0.20220101.81620.tar"; + sha256 = "0bk9w274k0rfmlxv5m9mxqy7ab8zdzk0sw4baqh73hvn8z3li8sp"; + }; + packageRequires = []; + meta = { + homepage = "https://elpa.gnu.org/packages/wcheck-mode.html"; + license = lib.licenses.free; + }; + }) {}; + wconf = callPackage ({ elpaBuild, emacs, fetchurl, lib }: + elpaBuild { + pname = "wconf"; + ename = "wconf"; + version = "0.2.1.0.20201202.220257"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/wconf-0.2.1.0.20201202.220257.tar"; + sha256 = "06ghn72l2fwn0ys2iakgw1xqalip31yi0449c26rad8gaz6y7vxl"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/wconf.html"; + license = lib.licenses.free; + }; + }) {}; + web-server = callPackage ({ cl-lib ? null + , elpaBuild + , emacs + , fetchurl + , lib }: + elpaBuild { + pname = "web-server"; + ename = "web-server"; + version = "0.1.2.0.20210811.22503"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/web-server-0.1.2.0.20210811.22503.tar"; + sha256 = "0pvmlv74hy7ybnl0014ml7c314an2vc2z6fkizw06zr27x22jpvl"; + }; + packageRequires = [ cl-lib emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/web-server.html"; + license = lib.licenses.free; + }; + }) {}; + webfeeder = callPackage ({ elpaBuild + , emacs + , fetchurl + , lib }: + elpaBuild { + pname = "webfeeder"; + ename = "webfeeder"; + version = "1.1.2.0.20210605.74155"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/webfeeder-1.1.2.0.20210605.74155.tar"; + sha256 = "0716x9a83wv41p3hz4qllrrv2w5jrw4xvb2fhi8kxaxrjhq989d9"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/webfeeder.html"; + license = lib.licenses.free; + }; + }) {}; + websocket = callPackage ({ cl-lib ? null + , elpaBuild + , fetchurl + , lib }: + elpaBuild { + pname = "websocket"; + ename = "websocket"; + version = "1.14.0.20230304.231043"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/websocket-1.14.0.20230304.231043.tar"; + sha256 = "03m3r7xsyhkz3zh84p4dkr6xn77ld8gdqpm6gjvcd4gfrs9i75wz"; + }; + packageRequires = [ cl-lib ]; + meta = { + homepage = "https://elpa.gnu.org/packages/websocket.html"; + license = lib.licenses.free; + }; + }) {}; + which-key = callPackage ({ elpaBuild + , emacs + , fetchurl + , lib }: + elpaBuild { + pname = "which-key"; + ename = "which-key"; + version = "3.6.0.0.20230330.172149"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/which-key-3.6.0.0.20230330.172149.tar"; + sha256 = "12sj692gskfmy2ch9h51j500c03srybx9nq4ngf5ac3n36rsbygp"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/which-key.html"; + license = lib.licenses.free; + }; + }) {}; + windower = callPackage ({ elpaBuild + , emacs + , fetchurl + , lib }: + elpaBuild { + pname = "windower"; + ename = "windower"; + version = "0.0.1.0.20200212.91532"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/windower-0.0.1.0.20200212.91532.tar"; + sha256 = "0005r5xgi7h7i0lbdxbsfs7hvdx4isan6df283xflxs0qv3hwpql"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/windower.html"; + license = lib.licenses.free; + }; + }) {}; + windresize = callPackage ({ elpaBuild + , fetchurl + , lib }: + elpaBuild { + pname = "windresize"; + ename = "windresize"; + version = "0.1.0.20221221.82616"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/windresize-0.1.0.20221221.82616.tar"; + sha256 = "16s4vxzjcjl5ahpfwzrr4z59mq0w0vb56ip3r5ky13xs3p5q2xl8"; + }; + packageRequires = []; + meta = { + homepage = "https://elpa.gnu.org/packages/windresize.html"; + license = lib.licenses.free; + }; + }) {}; + wisi = callPackage ({ elpaBuild, emacs, fetchurl, lib, seq }: + elpaBuild { + pname = "wisi"; + ename = "wisi"; + version = "4.2.2.0.20230126.2042"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/wisi-4.2.2.0.20230126.2042.tar"; + sha256 = "0b70yipm6wmz5034f5l7f78c2bgscm2c8lph75jgd5x1qwzngw47"; + }; + packageRequires = [ emacs seq ]; + meta = { + homepage = "https://elpa.gnu.org/packages/wisi.html"; + license = lib.licenses.free; + }; + }) {}; + wisitoken-grammar-mode = callPackage ({ elpaBuild + , emacs + , fetchurl + , lib + , mmm-mode + , wisi }: + elpaBuild { + pname = "wisitoken-grammar-mode"; + ename = "wisitoken-grammar-mode"; + version = "1.3.0.0.20230125.102656"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/wisitoken-grammar-mode-1.3.0.0.20230125.102656.tar"; + sha256 = "1h5pnghxg01f0hgxw7284b4rm5c43r48nbsxj19dcypxrzz3w1qw"; + }; + packageRequires = [ emacs mmm-mode wisi ]; + meta = { + homepage = "https://elpa.gnu.org/packages/wisitoken-grammar-mode.html"; + license = lib.licenses.free; + }; + }) {}; + wpuzzle = callPackage ({ elpaBuild, fetchurl, lib }: + elpaBuild { + pname = "wpuzzle"; + ename = "wpuzzle"; + version = "1.1.0.20221221.82918"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/wpuzzle-1.1.0.20221221.82918.tar"; + sha256 = "16mdd7cyzbhipr934cps8qjpgsr9wwnrd81yaca356wq0cwafhvb"; + }; + packageRequires = []; + meta = { + homepage = "https://elpa.gnu.org/packages/wpuzzle.html"; + license = lib.licenses.free; + }; + }) {}; + xclip = callPackage ({ elpaBuild, fetchurl, lib }: + elpaBuild { + pname = "xclip"; + ename = "xclip"; + version = "1.11.0.20221221.82941"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/xclip-1.11.0.20221221.82941.tar"; + sha256 = "09dkxgd3bcn8pfw441jq73k49l6m467w89l2xwzb2zb24qpd78ic"; + }; + packageRequires = []; + meta = { + homepage = "https://elpa.gnu.org/packages/xclip.html"; + license = lib.licenses.free; + }; + }) {}; + xeft = callPackage ({ elpaBuild, emacs, fetchurl, lib }: + elpaBuild { + pname = "xeft"; + ename = "xeft"; + version = "3.3.0.20230322.153950"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/xeft-3.3.0.20230322.153950.tar"; + sha256 = "0bnapb3kpyjlclysbs43003dzc7b2p80iqkxk42iqpwm2xyg9s8q"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/xeft.html"; + license = lib.licenses.free; + }; + }) {}; + xelb = callPackage ({ cl-generic, elpaBuild, emacs, fetchurl, lib }: + elpaBuild { + pname = "xelb"; + ename = "xelb"; + version = "0.18.0.20200719.0"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/xelb-0.18.0.20200719.0.tar"; + sha256 = "195zxjkrw9rmnzprvdr21pngfkwl7lcn0bnjqzywwaq19zb4c2rs"; + }; + packageRequires = [ cl-generic emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/xelb.html"; + license = lib.licenses.free; + }; + }) {}; + xpm = callPackage ({ cl-lib ? null, elpaBuild, fetchurl, lib, queue }: + elpaBuild { + pname = "xpm"; + ename = "xpm"; + version = "1.0.5.0.20221221.82958"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/xpm-1.0.5.0.20221221.82958.tar"; + sha256 = "0c1hrqb203cl44z0sasfx6d315n2cqwf3lc0l29r63lsh0sd5gfp"; + }; + packageRequires = [ cl-lib queue ]; + meta = { + homepage = "https://elpa.gnu.org/packages/xpm.html"; + license = lib.licenses.free; + }; + }) {}; + xr = callPackage ({ elpaBuild, emacs, fetchurl, lib }: + elpaBuild { + pname = "xr"; + ename = "xr"; + version = "1.23.0.20230326.142354"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/xr-1.23.0.20230326.142354.tar"; + sha256 = "0mxn1znp0f2v7xkaflska3v05sicx7ajshkvwczmcrnaizd5895z"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/xr.html"; + license = lib.licenses.free; + }; + }) {}; + xref = callPackage ({ elpaBuild, emacs, fetchurl, lib }: + elpaBuild { + pname = "xref"; + ename = "xref"; + version = "1.6.3.0.20230421.72914"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/xref-1.6.3.0.20230421.72914.tar"; + sha256 = "1wbprwfadnj6kqxh8r4kbm2lg3wvfnrywih1kgjwpail5ssbm8ix"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/xref.html"; + license = lib.licenses.free; + }; + }) {}; + xref-union = callPackage ({ elpaBuild + , emacs + , fetchurl + , lib }: + elpaBuild { + pname = "xref-union"; + ename = "xref-union"; + version = "0.1.1.0.20230325.142012"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/xref-union-0.1.1.0.20230325.142012.tar"; + sha256 = "0y879hqq9l6siiyl84k12a943j3130cdfxw34m8hhgpmxn2qccky"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/xref-union.html"; + license = lib.licenses.free; + }; + }) {}; + yasnippet = callPackage ({ cl-lib ? null + , elpaBuild + , fetchurl + , lib }: + elpaBuild { + pname = "yasnippet"; + ename = "yasnippet"; + version = "0.14.0.0.20210502.75302"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/yasnippet-0.14.0.0.20210502.75302.tar"; + sha256 = "17xaw27b7sjpb6j4jhfdr9vgd5r6gqhavwfn2zwhqnnc4qmvnj4k"; + }; + packageRequires = [ cl-lib ]; + meta = { + homepage = "https://elpa.gnu.org/packages/yasnippet.html"; + license = lib.licenses.free; + }; + }) {}; + yasnippet-classic-snippets = callPackage ({ elpaBuild + , fetchurl + , lib + , yasnippet }: + elpaBuild { + pname = "yasnippet-classic-snippets"; + ename = "yasnippet-classic-snippets"; + version = "1.0.2.0.20221221.83103"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/yasnippet-classic-snippets-1.0.2.0.20221221.83103.tar"; + sha256 = "1gy67f796pvaqckhbb9p05pn7f7d70ps7z0f1bg35156m3dfj7ff"; + }; + packageRequires = [ yasnippet ]; + meta = { + homepage = "https://elpa.gnu.org/packages/yasnippet-classic-snippets.html"; + license = lib.licenses.free; + }; + }) {}; + zones = callPackage ({ elpaBuild + , fetchurl + , lib }: + elpaBuild { + pname = "zones"; + ename = "zones"; + version = "2019.7.13.0.20221212.231608"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/zones-2019.7.13.0.20221212.231608.tar"; + sha256 = "1z7r295c2l1hxpz587szzbyxhig3b9siicwf3j1b31s8csdjzkvl"; + }; + packageRequires = []; + meta = { + homepage = "https://elpa.gnu.org/packages/zones.html"; + license = lib.licenses.free; + }; + }) {}; + ztree = callPackage ({ cl-lib ? null, elpaBuild, fetchurl, lib }: + elpaBuild { + pname = "ztree"; + ename = "ztree"; + version = "1.0.6.0.20210415.194722"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/ztree-1.0.6.0.20210415.194722.tar"; + sha256 = "1jcvzj0pwk4rwgp0xgzd2qlcgx0x3kg8843qsyr5banmphnmfma8"; + }; + packageRequires = [ cl-lib ]; + meta = { + homepage = "https://elpa.gnu.org/packages/ztree.html"; + license = lib.licenses.free; + }; + }) {}; + zuul = callPackage ({ elpaBuild, emacs, fetchurl, lib, project }: + elpaBuild { + pname = "zuul"; + ename = "zuul"; + version = "0.4.0.0.20230524.131806"; + src = fetchurl { + url = "https://elpa.gnu.org/devel/zuul-0.4.0.0.20230524.131806.tar"; + sha256 = "0yand8b9givmwr8b3y8da4qwxq2j0kjyfzigwydf0lmc96nix777"; + }; + packageRequires = [ emacs project ]; + meta = { + homepage = "https://elpa.gnu.org/packages/zuul.html"; + license = lib.licenses.free; + }; + }) {}; + } diff --git a/pkgs/applications/editors/emacs/elisp-packages/elpa-devel-packages.nix b/pkgs/applications/editors/emacs/elisp-packages/elpa-devel-packages.nix new file mode 100644 index 0000000000000..306e7192be1ac --- /dev/null +++ b/pkgs/applications/editors/emacs/elisp-packages/elpa-devel-packages.nix @@ -0,0 +1,62 @@ +/* + +# Updating + +To update the list of packages from ELPA, + +1. Run `./update-elpa-devel`. +2. Check for evaluation errors: + # "../../../../../" points to the default.nix from root of Nixpkgs tree + env NIXPKGS_ALLOW_BROKEN=1 nix-instantiate ../../../../../ -A emacs.pkgs.elpaDevelPackages +3. Run `git commit -m "elpa-devel-packages $(date -Idate)" -- elpa-devel-generated.nix` + +## Update from overlay + +Alternatively, run the following command: + +./update-from-overlay + +It will update both melpa and elpa packages using +https://github.com/nix-community/emacs-overlay. It's almost instantenous and +formats commits for you. + +*/ + +{ lib, stdenv, texinfo, writeText, gcc, pkgs, buildPackages }: + +self: let + + markBroken = pkg: pkg.override { + elpaBuild = args: self.elpaBuild (args // { + meta = (args.meta or {}) // { broken = true; }; + }); + }; + + elpaBuild = import ../../../../build-support/emacs/elpa.nix { + inherit lib stdenv texinfo writeText gcc; + inherit (self) emacs; + }; + + # Use custom elpa url fetcher with fallback/uncompress + fetchurl = buildPackages.callPackage ./fetchelpa.nix { }; + + generateElpa = lib.makeOverridable ({ + generated ? ./elpa-devel-generated.nix + }: let + + imported = import generated { + callPackage = pkgs: args: self.callPackage pkgs (args // { + inherit fetchurl; + }); + }; + + super = removeAttrs imported [ "dash" ]; + + overrides = { + }; + + elpaDevelPackages = super // overrides; + + in elpaDevelPackages // { inherit elpaBuild; }); + +in generateElpa { } diff --git a/pkgs/applications/editors/emacs/elisp-packages/emacs2nix.nix b/pkgs/applications/editors/emacs/elisp-packages/emacs2nix.nix index 2873be1787fa1..510c532e0589f 100644 --- a/pkgs/applications/editors/emacs/elisp-packages/emacs2nix.nix +++ b/pkgs/applications/editors/emacs/elisp-packages/emacs2nix.nix @@ -4,8 +4,8 @@ let src = pkgs.fetchFromGitHub { owner = "nix-community"; repo = "emacs2nix"; - rev = "2e8d2c644397be57455ad32c2849f692eeac7797"; - sha256 = "sha256-qnOYDYHAQ+r5eegKP9GqHz5R2ig96B2W7M+uYa1ti9M="; + rev = "7f07ac3c3f175630de68153d98a93b9fa24d1eb3"; + sha256 = "sha256-Mh9G8LH3n1ccg+shBoWQRk67yAA+GEYGkk8tjM7W02Y="; fetchSubmodules = true; }; in diff --git a/pkgs/applications/editors/emacs/elisp-packages/manual-packages/acm-terminal/default.nix b/pkgs/applications/editors/emacs/elisp-packages/manual-packages/acm-terminal/default.nix index 8aadb0867c321..bac7de0fea356 100644 --- a/pkgs/applications/editors/emacs/elisp-packages/manual-packages/acm-terminal/default.nix +++ b/pkgs/applications/editors/emacs/elisp-packages/manual-packages/acm-terminal/default.nix @@ -8,17 +8,17 @@ }: let - rev = "321e05fc0398a6159925b858f46608ea07ef269e"; + rev = "0dbbd7f401da1bedd1a9146df6127233d601435b"; in melpaBuild { pname = "acm-terminal"; - version = "20230215.414"; # 4:14 UTC + version = "20230601.1326"; # 13:26 UTC src = fetchFromGitHub { owner = "twlz0ne"; repo = "acm-terminal"; inherit rev; - sha256 = "sha256-Flw07EwH9z0E3tqXs4mStICJmoHfp60ALrP1GmUmeuU="; + sha256 = "sha256-Opouy9A6z0YUT1zxZq1yHx+r/hwNE93JDwfa1fMWNgc="; }; commit = rev; diff --git a/pkgs/applications/editors/emacs/elisp-packages/manual-packages/lsp-bridge/default.nix b/pkgs/applications/editors/emacs/elisp-packages/manual-packages/lsp-bridge/default.nix index a199e841dd7b9..2ff13345999dc 100644 --- a/pkgs/applications/editors/emacs/elisp-packages/manual-packages/lsp-bridge/default.nix +++ b/pkgs/applications/editors/emacs/elisp-packages/manual-packages/lsp-bridge/default.nix @@ -16,7 +16,7 @@ }: let - rev = "7e1e6a4c349e720d75c892cd7230b29c35148342"; + rev = "8de85f9967fec6a8e447e5b5f3021e5e1f95b445"; python = python3.withPackages (ps: with ps; [ epc orjson @@ -26,13 +26,13 @@ let in melpaBuild { pname = "lsp-bridge"; - version = "20230424.1642"; # 16:42 UTC + version = "20230603.345"; # 3:45 UTC src = fetchFromGitHub { owner = "manateelazycat"; repo = "lsp-bridge"; inherit rev; - sha256 = "sha256-e0XVQpsyjy8HeZN6kLRjnoTpyEefTqstsgydEKlEQ1c="; + sha256 = "sha256-08DFgZaYdlz9f9eqZuG760vpmO3D4QN9V66YqVyVsV4="; }; commit = rev; diff --git a/pkgs/applications/editors/emacs/elisp-packages/manual-packages/mind-wave/default.nix b/pkgs/applications/editors/emacs/elisp-packages/manual-packages/mind-wave/default.nix index 336cd510479f3..2bc5a733f6ce8 100644 --- a/pkgs/applications/editors/emacs/elisp-packages/manual-packages/mind-wave/default.nix +++ b/pkgs/applications/editors/emacs/elisp-packages/manual-packages/mind-wave/default.nix @@ -47,14 +47,14 @@ # ]; melpaBuild rec { pname = "mind-wave"; - version = "20230322.1348"; # 13:48 UTC + version = "20230523.0332"; # 03:32 UTC src = pkgs.fetchFromGitHub { owner = "manateelazycat"; repo = "mind-wave"; - rev = "2d94f553a394ce73bcb91490b81e0fc042baa8d3"; - sha256 = "sha256-6tmcPYAEch5bX5hEHMiQGDNYEMUOvnxF1Vq0VVpBsYo="; + rev = "5109162b74872091c5090a28389bef8f7020274c"; + sha256 = "sha256-ZyXrpb0GLWSGnMsVIGL9qALSBCeIWNF0UwkCFgCKnu8="; }; - commit = "2d94f553a394ce73bcb91490b81e0fc042baa8d3"; + commit = "5109162b74872091c5090a28389bef8f7020274c"; # elisp dependencies packageRequires = [ pkgs.emacsPackages.markdown-mode diff --git a/pkgs/applications/editors/emacs/elisp-packages/manual-packages/treesit-grammars/default.nix b/pkgs/applications/editors/emacs/elisp-packages/manual-packages/treesit-grammars/default.nix index 8b2c723f22930..af720337ff05e 100644 --- a/pkgs/applications/editors/emacs/elisp-packages/manual-packages/treesit-grammars/default.nix +++ b/pkgs/applications/editors/emacs/elisp-packages/manual-packages/treesit-grammars/default.nix @@ -1,19 +1,20 @@ -{ pkgs, lib, tree-sitter, ... }: +{ pkgs, lib }: let - libExt = pkgs.stdenv.targetPlatform.extensions.sharedLibrary; + libExt = pkgs.stdenv.hostPlatform.extensions.sharedLibrary; grammarToAttrSet = drv: - { - name = "lib/lib${lib.strings.removeSuffix "-grammar" (lib.strings.getName drv)}${libExt}"; - path = "${drv}/parser"; - }; -in -{ - with-all-grammars = pkgs.linkFarm "emacs-treesit-grammars" - (map grammarToAttrSet pkgs.tree-sitter.allGrammars); + { + name = "lib/lib${lib.strings.removeSuffix "-grammar" (lib.strings.getName drv)}${libExt}"; + path = "${drv}/parser"; + }; - # Use this one like this: - # treesit-grammars.with-grammars (grammars: with grammars; [tree-sitter-bash]) + # Usage: + # treesit-grammars.with-grammars (p: [ p.tree-sitter-bash p.tree-sitter-c ... ]) with-grammars = fn: pkgs.linkFarm "emacs-treesit-grammars" (map grammarToAttrSet (fn pkgs.tree-sitter.builtGrammars)); +in +{ + inherit with-grammars; + + with-all-grammars = with-grammars builtins.attrValues; } diff --git a/pkgs/applications/editors/emacs/elisp-packages/update-elpa-devel b/pkgs/applications/editors/emacs/elisp-packages/update-elpa-devel new file mode 100755 index 0000000000000..b5af44424763c --- /dev/null +++ b/pkgs/applications/editors/emacs/elisp-packages/update-elpa-devel @@ -0,0 +1,4 @@ +#! /usr/bin/env nix-shell +#! nix-shell --show-trace ./emacs2nix.nix -i bash + +exec elpa-devel-packages.sh --names $EMACS2NIX/names.nix -o elpa-devel-generated.nix diff --git a/pkgs/applications/editors/emacs/generic.nix b/pkgs/applications/editors/emacs/generic.nix index 53043294539a8..ddfdbe3371862 100644 --- a/pkgs/applications/editors/emacs/generic.nix +++ b/pkgs/applications/editors/emacs/generic.nix @@ -1,66 +1,126 @@ -{ - version - , sha256 - , versionModifier ? "" - , pname ? "emacs" - , name ? "emacs-${version}${versionModifier}" - , patches ? _: [ ] - , macportVersion ? null +{ pname ? "emacs" +, version +, versionModifier ? "" +, name ? "emacs-${version}${versionModifier}" +, variant +, src +, patches ? _: [ ] }: -{ stdenv, llvmPackages_6, lib, fetchurl, fetchpatch, substituteAll, ncurses, libXaw, libXpm -, Xaw3d, libXcursor, pkg-config, gettext, libXft, dbus, libpng, libjpeg, giflib -, libtiff, librsvg, libwebp, gconf, libxml2, imagemagick, gnutls, libselinux -, alsa-lib, cairo, acl, gpm, m17n_lib, libotf -, sigtool, jansson, harfbuzz, sqlite, nixosTests -, recurseIntoAttrs, emacsPackagesFor -, libgccjit, makeWrapper # native-comp params -, fetchFromSavannah, fetchFromBitbucket - - # macOS dependencies for NS and macPort -, AppKit, Carbon, Cocoa, IOKit, OSAKit, Quartz, QuartzCore, WebKit -, ImageCaptureCore, GSS, ImageIO # These may be optional - -, withX ? !stdenv.isDarwin && !withPgtk -, withNS ? stdenv.isDarwin && !withMacport -, withMacport ? macportVersion != null -, withGTK2 ? false, gtk2-x11 ? null -, withGTK3 ? withPgtk, gtk3-x11 ? null, gsettings-desktop-schemas ? null -, withXwidgets ? false, webkitgtk ? null, wrapGAppsHook ? null, glib-networking ? null -, withMotif ? false, motif ? null -, withSQLite3 ? false -, withCsrc ? true -, withWebP ? false -, srcRepo ? true, autoreconfHook ? null, texinfo ? null -, siteStart ? ./site-start.el + +{ lib +, stdenv +, Xaw3d +, acl +, alsa-lib +, autoreconfHook +, cairo +, dbus +, emacsPackagesFor +, fetchpatch +, gconf +, gettext +, giflib +, glib-networking +, gnutls +, gpm +, gsettings-desktop-schemas +, gtk2-x11 +, gtk3 +, gtk3-x11 +, harfbuzz +, imagemagick +, jansson +, libXaw +, libXcursor +, libXft +, libXpm +, libgccjit +, libjpeg +, libotf +, libpng +, librsvg +, libselinux +, libtiff +, libwebp +, libxml2 +, llvmPackages_6 +, m17n_lib +, makeWrapper +, motif +, ncurses +, nixosTests +, pkg-config +, recurseIntoAttrs +, sigtool +, sqlite +, substituteAll +, systemd +, tree-sitter +, texinfo +, webkitgtk +, wrapGAppsHook + +# macOS dependencies for NS and macPort +, AppKit +, Carbon +, Cocoa +, GSS +, IOKit +, ImageCaptureCore +, ImageIO +, OSAKit +, Quartz +, QuartzCore +, WebKit + +# Boolean flags , nativeComp ? true +, noGui ? false +, srcRepo ? true +, withAcl ? false +, withAlsaLib ? false , withAthena ? false +, withCsrc ? true +, withGTK2 ? false +, withGTK3 ? withPgtk && !noGui +, withGconf ? false +, withGpm ? stdenv.isLinux +, withImageMagick ? lib.versionOlder version "27" && (withX || withNS) +, withMotif ? false +, withNS ? stdenv.isDarwin && !(variant == "macport" || noGui) +, withPgtk ? false +, withSQLite3 ? lib.versionAtLeast version "29" +, withSystemd ? lib.meta.availableOn stdenv.hostPlatform systemd , withToolkitScrollBars ? true -, withPgtk ? false, gtk3 ? null +, withTreeSitter ? lib.versionAtLeast version "29" +, withWebP ? lib.versionAtLeast version "29" +, withX ? !(stdenv.isDarwin || noGui || withPgtk) , withXinput2 ? withX && lib.versionAtLeast version "29" -, withImageMagick ? lib.versionOlder version "27" && (withX || withNS) +, withXwidgets ? false + +# Options +, siteStart ? ./site-start.el , toolkit ? ( if withGTK2 then "gtk2" else if withGTK3 then "gtk3" else if withMotif then "motif" else if withAthena then "athena" else "lucid") -, withSystemd ? lib.meta.availableOn stdenv.hostPlatform systemd, systemd -, withTreeSitter ? lib.versionAtLeast version "29", tree-sitter ? null }: -assert (libXft != null) -> libpng != null; # probably a bug -assert stdenv.isDarwin -> libXaw != null; # fails to link otherwise -assert withNS -> !withX; -assert withNS -> stdenv.isDarwin; -assert withMacport -> !withNS; -assert (withGTK2 && !withNS && !withMacport) -> withX; -assert (withGTK3 && !withNS && !withMacport) -> withX || withPgtk; -assert withGTK2 -> !withGTK3 && gtk2-x11 != null && !withPgtk; -assert withGTK3 -> !withGTK2 && ((gtk3-x11 != null) || withPgtk); -assert withPgtk -> withGTK3 && !withX && gtk3 != null; -assert withXwidgets -> withGTK3 && webkitgtk != null; -assert withTreeSitter -> tree-sitter != null; +assert (withGTK2 && !withNS && variant != "macport") -> withX; +assert (withGTK3 && !withNS && variant != "macport") -> withX || withPgtk; +assert noGui -> !(withX || withGTK2 || withGTK3 || withNS || variant == "macport"); +assert withAcl -> stdenv.isLinux; +assert withAlsaLib -> stdenv.isLinux; +assert withGTK2 -> !(withGTK3 || withPgtk); +assert withGTK3 -> !withGTK2 || withPgtk; +assert withGconf -> withX; +assert withGpm -> stdenv.isLinux; +assert withNS -> stdenv.isDarwin && !(withX || variant == "macport"); +assert withPgtk -> withGTK3 && !withX; +assert withXwidgets -> withGTK3; let libGccJitLibraryPaths = [ @@ -69,14 +129,27 @@ let ] ++ lib.optionals (stdenv.cc?cc.libgcc) [ "${lib.getLib stdenv.cc.cc.libgcc}/lib" ]; + + inherit (if variant == "macport" + then llvmPackages_6.stdenv + else stdenv) mkDerivation; in -(if withMacport then llvmPackages_6.stdenv else stdenv).mkDerivation (finalAttrs: (lib.optionalAttrs nativeComp { - NATIVE_FULL_AOT = "1"; - LIBRARY_PATH = lib.concatStringsSep ":" libGccJitLibraryPaths; +mkDerivation (finalAttrs: (lib.optionalAttrs nativeComp { + env = { + NATIVE_FULL_AOT = "1"; + LIBRARY_PATH = lib.concatStringsSep ":" libGccJitLibraryPaths; + }; } // { - pname = pname + lib.optionalString ( !withX && !withNS && !withMacport && !withGTK2 && !withGTK3 ) "-nox"; + pname = pname + + (if noGui then "-nox" + else if withPgtk then "-pgtk" + else if withGTK3 then "-gtk3" + else if withGTK2 then "-gtk2" + else ""); inherit version; + inherit src; + patches = patches fetchpatch ++ lib.optionals nativeComp [ (substituteAll { src = if lib.versionOlder finalAttrs.version "29" @@ -95,27 +168,14 @@ in }) ]; - src = if macportVersion != null then fetchFromBitbucket { - owner = "mituharu"; - repo = "emacs-mac"; - rev = macportVersion; - inherit sha256; - } else fetchFromSavannah { - repo = "emacs"; - rev = version; - inherit sha256; - }; - - enableParallelBuilding = true; - postPatch = lib.concatStringsSep "\n" [ (lib.optionalString srcRepo '' rm -fr .git '') # Add the name of the wrapped gvfsd - # This used to be carried as a patch but it often got out of sync with upstream - # and was hard to maintain for emacs-overlay. + # This used to be carried as a patch but it often got out of sync with + # upstream and was hard to maintain for emacs-overlay. (lib.concatStrings (map (fn: '' sed -i 's#(${fn} "gvfs-fuse-daemon")#(${fn} "gvfs-fuse-daemon") (${fn} ".gvfsd-fuse-wrapped")#' lisp/net/tramp-gvfs.el '') [ @@ -130,81 +190,150 @@ in '' '' - substituteInPlace lisp/international/mule-cmds.el \ - --replace /usr/share/locale ${gettext}/share/locale + substituteInPlace lisp/international/mule-cmds.el \ + --replace /usr/share/locale ${gettext}/share/locale - for makefile_in in $(find . -name Makefile.in -print); do - substituteInPlace $makefile_in --replace /bin/pwd pwd - done + for makefile_in in $(find . -name Makefile.in -print); do + substituteInPlace $makefile_in --replace /bin/pwd pwd + done '' "" ]; - nativeBuildInputs = [ pkg-config makeWrapper ] - ++ lib.optionals (srcRepo || withMacport) [ texinfo ] - ++ lib.optionals srcRepo [ autoreconfHook ] - ++ lib.optional (withPgtk || withX && (withGTK3 || withXwidgets)) wrapGAppsHook; - - buildInputs = - [ ncurses gconf libxml2 gnutls gettext jansson harfbuzz.dev ] - ++ lib.optionals stdenv.isLinux [ dbus libselinux alsa-lib acl gpm ] - ++ lib.optionals withSystemd [ systemd ] - ++ lib.optionals withX - [ libXaw Xaw3d gconf cairo ] - ++ lib.optionals (withX || withPgtk) - [ libXpm libpng libjpeg giflib libtiff ] - ++ lib.optionals (withX || withNS || withPgtk ) [ librsvg ] - ++ lib.optionals withImageMagick [ imagemagick ] - ++ lib.optionals (stdenv.isLinux && withX) [ m17n_lib libotf ] - ++ lib.optional (withX && withGTK2) gtk2-x11 - ++ lib.optional (withX && withGTK3) gtk3-x11 - ++ lib.optional (!stdenv.isDarwin && withGTK3) gsettings-desktop-schemas - ++ lib.optional withPgtk gtk3 - ++ lib.optional (withX && withMotif) motif - ++ lib.optional withSQLite3 sqlite - ++ lib.optional withWebP libwebp - ++ lib.optionals (withX && withXwidgets) [ webkitgtk glib-networking ] - ++ lib.optionals withNS [ AppKit GSS ImageIO ] - ++ lib.optionals withMacport [ - AppKit Carbon Cocoa IOKit OSAKit Quartz QuartzCore WebKit - # TODO are these optional? - ImageCaptureCore GSS ImageIO - ] - ++ lib.optionals stdenv.isDarwin [ sigtool ] - ++ lib.optionals nativeComp [ libgccjit ] - ++ lib.optionals withTreeSitter [ tree-sitter ]; + nativeBuildInputs = [ + makeWrapper + pkg-config + ] ++ lib.optionals (variant == "macport") [ + texinfo + ] ++ lib.optionals srcRepo [ + autoreconfHook + texinfo + ] ++ lib.optional (withPgtk || withX && (withGTK3 || withXwidgets)) wrapGAppsHook; + + buildInputs = [ + gettext + gnutls + harfbuzz.dev + jansson + libxml2 + ncurses + ] ++ lib.optionals withGconf [ + gconf + ] ++ lib.optionals withAcl [ + acl + ] ++ lib.optionals withAlsaLib [ + alsa-lib + ] ++ lib.optionals withGpm [ + gpm + ] ++ lib.optionals stdenv.isLinux [ + dbus + libselinux + ] ++ lib.optionals (!stdenv.isDarwin && withGTK3) [ + gsettings-desktop-schemas + ] ++ lib.optionals (stdenv.isLinux && withX) [ + libotf + m17n_lib + ] ++ lib.optionals (withX && withGTK2) [ + gtk2-x11 + ] ++ lib.optionals (withX && withGTK3) [ + gtk3-x11 + ] ++ lib.optionals (withX && withMotif) [ + motif + ] ++ lib.optionals (withX && withXwidgets) [ + glib-networking + webkitgtk + ] ++ lib.optionals nativeComp [ + libgccjit + ] ++ lib.optionals withImageMagick [ + imagemagick + ] ++ lib.optionals withPgtk [ + giflib + gtk3 + libXpm + libjpeg + libpng + librsvg + libtiff + ] ++ lib.optionals withSQLite3 [ + sqlite + ] ++ lib.optionals withSystemd [ + systemd + ] ++ lib.optionals withTreeSitter [ + tree-sitter + ] ++ lib.optionals withWebP [ + libwebp + ] ++ lib.optionals withX [ + Xaw3d + cairo + + giflib + libXaw + libXpm + libjpeg + libpng + librsvg + libtiff + ] ++ lib.optionals stdenv.isDarwin [ + sigtool + ] ++ lib.optionals withNS [ + librsvg + AppKit + GSS + ImageIO + ] ++ lib.optionals (variant == "macport") [ + AppKit + Carbon + Cocoa + IOKit + OSAKit + Quartz + QuartzCore + WebKit + # TODO are these optional? + GSS + ImageCaptureCore + ImageIO + ]; hardeningDisable = [ "format" ]; configureFlags = [ "--disable-build-details" # for a (more) reproducible build "--with-modules" - ] ++ - (lib.optional stdenv.isDarwin - (lib.withFeature withNS "ns")) ++ - (if withNS - then [ "--disable-ns-self-contained" ] - else if withX - then [ "--with-x-toolkit=${toolkit}" "--with-xft" "--with-cairo" ] - else if withPgtk - then [ "--with-pgtk" ] - else [ "--with-x=no" "--with-xpm=no" "--with-jpeg=no" "--with-png=no" - "--with-gif=no" "--with-tiff=no" ]) - ++ lib.optionals withMacport [ - "--with-mac" - "--enable-mac-app=$$out/Applications" - "--with-xml2=yes" - "--with-gnutls=yes" - ] - ++ lib.optional withXwidgets "--with-xwidgets" - ++ lib.optional nativeComp "--with-native-compilation" - ++ lib.optional withImageMagick "--with-imagemagick" - ++ lib.optional withXinput2 "--with-xinput2" - ++ lib.optional (!withToolkitScrollBars) "--without-toolkit-scroll-bars" - ++ lib.optional withTreeSitter "--with-tree-sitter" + ] ++ (if withNS then [ + "--disable-ns-self-contained" + ] else if withX then [ + "--with-x-toolkit=${toolkit}" + "--with-xft" + "--with-cairo" + ] else if withPgtk then [ + "--with-pgtk" + ] else [ + "--with-gif=no" + "--with-jpeg=no" + "--with-png=no" + "--with-tiff=no" + "--with-x=no" + "--with-xpm=no" + ]) + ++ lib.optionals (variant == "macport") [ + "--enable-mac-app=$$out/Applications" + "--with-gnutls=yes" + "--with-mac" + "--with-xml2=yes" + ] + ++ (lib.optional stdenv.isDarwin (lib.withFeature withNS "ns")) + ++ lib.optional (!withToolkitScrollBars) "--without-toolkit-scroll-bars" + ++ lib.optional nativeComp "--with-native-compilation" + ++ lib.optional withImageMagick "--with-imagemagick" + ++ lib.optional withTreeSitter "--with-tree-sitter" + ++ lib.optional withXinput2 "--with-xinput2" + ++ lib.optional withXwidgets "--with-xwidgets" ; + enableParallelBuilding = true; + installTargets = [ "tags" "install" ]; postInstall = '' @@ -227,7 +356,7 @@ in '' + lib.optionalString withNS '' mkdir -p $out/Applications mv nextstep/Emacs.app $out/Applications - '' + lib.optionalString (nativeComp && (withNS || withMacport)) '' + '' + lib.optionalString (nativeComp && (withNS || variant == "macport")) '' ln -snf $out/lib/emacs/*/native-lisp $out/Applications/Emacs.app/Contents/native-lisp '' + lib.optionalString nativeComp '' echo "Generating native-compiled trampolines..." @@ -256,29 +385,44 @@ in tests = { inherit (nixosTests) emacs-daemon; }; }; - meta = with lib; { - description = "The extensible, customizable GNU text editor" + optionalString withMacport " with Mitsuharu Yamamoto's macport patches"; - homepage = if withMacport then "https://bitbucket.org/mituharu/emacs-mac/" else "https://www.gnu.org/software/emacs/"; - license = licenses.gpl3Plus; - maintainers = with maintainers; [ lovek323 jwiegley adisbladis matthewbauer atemu ]; - platforms = if withMacport then platforms.darwin else platforms.all; - broken = !(stdenv.buildPlatform.canExecute stdenv.hostPlatform); - + meta = { + homepage = if variant == "macport" + then "https://bitbucket.org/mituharu/emacs-mac/" + else "https://www.gnu.org/software/emacs/"; + description = "The extensible, customizable GNU text editor" + + lib.optionalString (variant == "macport") " - with macport patches"; longDescription = '' - GNU Emacs is an extensible, customizable text editor—and more. At its - core is an interpreter for Emacs Lisp, a dialect of the Lisp - programming language with extensions to support text editing. + GNU Emacs is an extensible, customizable text editor—and more. At its + core is an interpreter for Emacs Lisp, a dialect of the Lisp programming + language with extensions to support text editing. The features of GNU Emacs include: content-sensitive editing modes, including syntax coloring, for a wide variety of file types including plain text, source code, and HTML; complete built-in documentation, including a tutorial for new users; full Unicode support for nearly all - human languages and their scripts; highly customizable, using Emacs - Lisp code or a graphical interface; a large number of extensions that - add other functionality, including a project planner, mail and news - reader, debugger interface, calendar, and more. Many of these - extensions are distributed with GNU Emacs; others are available - separately. + human languages and their scripts; highly customizable, using Emacs Lisp + code or a graphical interface; a large number of extensions that add other + functionality, including a project planner, mail and news reader, debugger + interface, calendar, and more. Many of these extensions are distributed + with GNU Emacs; others are available separately. + '' + + lib.optionalString (variant == "macport") '' + + This release is built from Mitsuharu Yamamoto's patched, MacOS X-specific + source code. ''; + license = lib.licenses.gpl3Plus; + maintainers = with lib.maintainers; [ + AndersonTorres + adisbladis + atemu + jwiegley + lovek323 + matthewbauer + ]; + platforms = if variant == "macport" + then lib.platforms.darwin + else lib.platforms.all; + broken = !(stdenv.buildPlatform.canExecute stdenv.hostPlatform); }; })) diff --git a/pkgs/applications/editors/emacs/macport.nix b/pkgs/applications/editors/emacs/macport.nix deleted file mode 100644 index 9a30b2b5b408b..0000000000000 --- a/pkgs/applications/editors/emacs/macport.nix +++ /dev/null @@ -1,6 +0,0 @@ -import ./generic.nix rec { - pname = "emacs-mac"; - version = "28.2"; - macportVersion = "emacs-${version}-mac-9.1"; - sha256 = "sha256-Ne2jQ2nVLNiQmnkkOXVc5AkLVkTpm8pFC7VNY2gQjPE="; -} diff --git a/pkgs/applications/editors/emacs/sources.nix b/pkgs/applications/editors/emacs/sources.nix new file mode 100644 index 0000000000000..4744456ee434f --- /dev/null +++ b/pkgs/applications/editors/emacs/sources.nix @@ -0,0 +1,40 @@ +{ lib +, fetchFromBitbucket +, fetchFromSavannah +}: + +{ + emacs28 = import ./generic.nix { + pname = "emacs"; + version = "28.2"; + variant = "mainline"; + src = fetchFromSavannah { + repo = "emacs"; + rev = "28.2"; + hash = "sha256-4oSLcUDR0MOEt53QOiZSVU8kPJ67GwugmBxdX3F15Ag="; + }; + }; + + emacs29 = import ./generic.nix { + pname = "emacs"; + version = "29.0.91"; + variant = "mainline"; + src = fetchFromSavannah { + repo = "emacs"; + rev = "29.0.91"; + hash = "sha256-YU/sbIr7xX5ELJtPcTL9ZQgZtjEW5oI7YC20fQsOVSY="; + }; + }; + + emacs-macport = import ./generic.nix { + pname = "emacs-mac"; + version = "28.2"; + variant = "macport"; + src = fetchFromBitbucket { + owner = "mituharu"; + repo = "emacs-mac"; + rev = "emacs-28.2-mac-9.1"; + hash = "sha256-Ne2jQ2nVLNiQmnkkOXVc5AkLVkTpm8pFC7VNY2gQjPE="; + }; + }; +} diff --git a/pkgs/applications/editors/helix/default.nix b/pkgs/applications/editors/helix/default.nix index 1000b700a3e33..53d9728ef0048 100644 --- a/pkgs/applications/editors/helix/default.nix +++ b/pkgs/applications/editors/helix/default.nix @@ -1,33 +1,27 @@ -{ fetchFromGitHub, lib, rustPlatform, installShellFiles, makeWrapper, callPackage }: +{ fetchzip, lib, rustPlatform, git, installShellFiles, makeWrapper }: -let +rustPlatform.buildRustPackage rec { + pname = "helix"; version = "23.05"; - src = fetchFromGitHub { - owner = "helix-editor"; - repo = "helix"; - rev = "${version}"; - hash = "sha256-Ws9uWtZLvTwL5HNonFr4YwyPoTU8QlCvhs6IJ92aLDw="; - }; - - grammars = callPackage ./grammars.nix { }; -in rustPlatform.buildRustPackage { - inherit src version; - - pname = "helix"; # This release tarball includes source code for the tree-sitter grammars, # which is not ordinarily part of the repository. - cargoSha256 = "sha256-/LCtfyDAA2JuioBD/CDMv6OOxM0B9A3PpuVP/YY5oF0="; + src = fetchzip { + url = "https://github.com/helix-editor/helix/releases/download/${version}/helix-${version}-source.tar.xz"; + hash = "sha256-3ZEToXwW569P7IFLqz6Un8rClnWrW5RiYKmRVFt7My8="; + stripRoot = false; + }; + + cargoHash = "sha256-/LCtfyDAA2JuioBD/CDMv6OOxM0B9A3PpuVP/YY5oF0="; - nativeBuildInputs = [ installShellFiles makeWrapper ]; + nativeBuildInputs = [ git installShellFiles makeWrapper ]; postInstall = '' - # We self build the grammar files - rm -r runtime/grammars + # not needed at runtime + rm -r runtime/grammars/sources mkdir -p $out/lib cp -r runtime $out/lib - ln -s ${grammars} $out/lib/runtime/grammars installShellCompletion contrib/completion/hx.{bash,fish,zsh} mkdir -p $out/share/{applications,icons/hicolor/256x256/apps} cp contrib/Helix.desktop $out/share/applications @@ -37,11 +31,6 @@ in rustPlatform.buildRustPackage { wrapProgram $out/bin/hx --set HELIX_RUNTIME $out/lib/runtime ''; - # disable fetching and building of tree-sitter grammars in favor of the custom build process in ./grammars.nix - env.HELIX_DISABLE_AUTO_GRAMMAR_BUILD = "1"; - - passthru.updateScript = ./update.py; - meta = with lib; { description = "A post-modern modal text editor"; homepage = "https://helix-editor.com"; diff --git a/pkgs/applications/editors/helix/grammars.nix b/pkgs/applications/editors/helix/grammars.nix deleted file mode 100644 index 2f5f97970c4cf..0000000000000 --- a/pkgs/applications/editors/helix/grammars.nix +++ /dev/null @@ -1,106 +0,0 @@ -{ - stdenv, - lib, - runCommand, - includeGrammarIf ? _: true, - fetchFromGitHub, - fetchgit, - ... -}: let - # similiar to https://github.com/helix-editor/helix/blob/23.05/grammars.nix - grammars = builtins.fromJSON (builtins.readFile ./language-grammars.json); - isGitGrammar = grammar: - builtins.hasAttr "source" grammar - && builtins.hasAttr "git" grammar.source - && builtins.hasAttr "rev" grammar.source; - isGitHubGrammar = grammar: lib.hasPrefix "https://github.com" grammar.source.git; - toGitHubFetcher = url: let - match = builtins.match "https://github\.com/([^/]*)/([^/]*)/?" url; - in { - owner = builtins.elemAt match 0; - repo = builtins.elemAt match 1; - }; - gitGrammars = builtins.filter isGitGrammar grammars; - buildGrammar = grammar: let - gh = toGitHubFetcher grammar.source.git; - sourceGit = fetchgit { - url = grammar.source.git; - inherit (grammar.source) rev sha256; - }; - sourceGitHub = fetchFromGitHub { - owner = gh.owner; - repo = gh.repo; - inherit (grammar.source) rev sha256; - }; - source = - if isGitHubGrammar grammar - then sourceGitHub - else sourceGit; - in - stdenv.mkDerivation rec { - # similar to tree-sitter grammar generation - pname = "helix-tree-sitter-grammar-${grammar.name}"; - version = grammar.source.rev; - - src = - if builtins.hasAttr "subpath" grammar.source - then "${source}/${grammar.source.subpath}" - else source; - - dontConfigure = true; - - FLAGS = [ - "-I${src}/src" - "-g" - "-O3" - "-fPIC" - "-fno-exceptions" - "-Wl,-z,relro,-z,now" - ]; - - NAME = grammar.name; - - buildPhase = '' - runHook preBuild - - if [[ -e "src/scanner.cc" ]]; then - $CXX -c "src/scanner.cc" -o scanner.o $FLAGS - elif [[ -e "src/scanner.c" ]]; then - $CC -c "src/scanner.c" -o scanner.o $FLAGS - fi - - $CC -c "src/parser.c" -o parser.o $FLAGS - $CXX -shared -o $NAME.so *.o - - runHook postBuild - ''; - - installPhase = '' - runHook preInstall - mkdir $out - mv $NAME.so $out/ - runHook postInstall - ''; - - # Strip failed on darwin: strip: error: symbols referenced by indirect symbol table entries that can't be stripped - fixupPhase = lib.optionalString stdenv.isLinux '' - runHook preFixup - $STRIP $out/$NAME.so - runHook postFixup - ''; - }; - grammarsToBuild = builtins.filter includeGrammarIf gitGrammars; - builtGrammars = - builtins.map (grammar: { - inherit (grammar) name; - artifact = buildGrammar grammar; - }) - grammarsToBuild; - grammarLinks = - builtins.map (grammar: "ln -s ${grammar.artifact}/${grammar.name}.so $out/${grammar.name}.so") - builtGrammars; -in - runCommand "helix-tree-sitter-grammars" {} '' - mkdir -p $out - ${builtins.concatStringsSep "\n" grammarLinks} - '' diff --git a/pkgs/applications/editors/helix/language-grammars.json b/pkgs/applications/editors/helix/language-grammars.json deleted file mode 100644 index 31d4eb620a7c2..0000000000000 --- a/pkgs/applications/editors/helix/language-grammars.json +++ /dev/null @@ -1 +0,0 @@ -[{"name": "rust", "source": {"git": "https://github.com/tree-sitter/tree-sitter-rust", "rev": "0431a2c60828731f27491ee9fdefe25e250ce9c9", "sha256": "149jhy01mqvavwa8jlxb8bnn7sxpfq2x1w35si6zn60b7kqjlx8f"}}, {"name": "sway", "source": {"git": "https://github.com/FuelLabs/tree-sitter-sway", "rev": "e491a005ee1d310f4c138bf215afd44cfebf959c", "sha256": "0d9qszx7iy8dk68ic24gwdm9xm2636ig7nb3n76l5a1jnsk0i03d"}}, {"name": "toml", "source": {"git": "https://github.com/ikatyang/tree-sitter-toml", "rev": "7cff70bbcbbc62001b465603ca1ea88edd668704", "sha256": "001pjz32v1b3sawlab68fdqz4xwk0v65wj5cdbcav2w1d9n9rhcd"}}, {"name": "awk", "source": {"git": "https://github.com/Beaglefoot/tree-sitter-awk", "rev": "a799bc5da7c2a84bc9a06ba5f3540cf1191e4ee3", "sha256": "0rw9p60vf2119vvjqnr4an85bryr8nq7jh0pkhzwpy7xh0nszy83"}}, {"name": "protobuf", "source": {"git": "https://github.com/yusdacra/tree-sitter-protobuf", "rev": "19c211a01434d9f03efff99f85e19f967591b175", "sha256": "04gxmrc0xf6x96sv347i1p00jcai31ml0s1csj1iz5mjdzgsllhh"}}, {"name": "elixir", "source": {"git": "https://github.com/elixir-lang/tree-sitter-elixir", "rev": "b20eaa75565243c50be5e35e253d8beb58f45d56", "sha256": "1i0c0xki3sv24649p0ws7xs2jagbwg7z7baz1960239bj94nl487"}}, {"name": "fish", "source": {"git": "https://github.com/ram02z/tree-sitter-fish", "rev": "84436cf24c2b3176bfbb220922a0fdbd0141e406", "sha256": "12s3db2mg9qa8l1i4a5h59kd7kl5j83wyl5kzq7j2k56xmvq56x0"}}, {"name": "json", "source": {"git": "https://github.com/tree-sitter/tree-sitter-json", "rev": "73076754005a460947cafe8e03a8cf5fa4fa2938", "sha256": "1npf2hrx33jhjpmzcyi7aszg436m4d80sa6h4mhhkmx51q4kpcf1"}}, {"name": "c", "source": {"git": "https://github.com/tree-sitter/tree-sitter-c", "rev": "7175a6dd5fc1cee660dce6fe23f6043d75af424a", "sha256": "1w03r4l773ki4iq2xxsc2pqxf3pjsbybq3xq4glmnsihgylibn8v"}}, {"name": "cpp", "source": {"git": "https://github.com/tree-sitter/tree-sitter-cpp", "rev": "2d2c4aee8672af4c7c8edff68e7dd4c07e88d2b1", "sha256": "1fv87f5ba8gxqxaf5ykhgjvkilml920rbxhdcf9d7jkh794mccq6"}}, {"name": "c-sharp", "source": {"git": "https://github.com/tree-sitter/tree-sitter-c-sharp", "rev": "5b60f99545fea00a33bbfae5be956f684c4c69e2", "sha256": "1dzfnj9b5xgx0av4xyvd71i8bj3hxaq97s91np5jzd2vjvbvw7p1"}}, {"name": "go", "source": {"git": "https://github.com/tree-sitter/tree-sitter-go", "rev": "64457ea6b73ef5422ed1687178d4545c3e91334a", "sha256": "16d32m78y8jricba9xav35c9y0k2r29irj5xyqgq24323yln9jnz"}}, {"name": "gomod", "source": {"git": "https://github.com/camdencheek/tree-sitter-go-mod", "rev": "e8f51f8e4363a3d9a427e8f63f4c1bbc5ef5d8d0", "sha256": "09rkqwdwhsm41nrz73rqbajap4bc0spjcld9k9fr8xmlmqa67j2b"}}, {"name": "gotmpl", "source": {"git": "https://github.com/dannylongeuay/tree-sitter-go-template", "rev": "395a33e08e69f4155156f0b90138a6c86764c979", "sha256": "0v1ciqdr9zj3hrzg9rrikr6v72yjs25sk631kd32r024igpxflv2"}}, {"name": "gowork", "source": {"git": "https://github.com/omertuc/tree-sitter-go-work", "rev": "6dd9dd79fb51e9f2abc829d5e97b15015b6a8ae2", "sha256": "1kzrs4rpby3b0h87rbr02k55k3mmkmdy7rvl11q95b3ym0smmyqb"}}, {"name": "javascript", "source": {"git": "https://github.com/tree-sitter/tree-sitter-javascript", "rev": "4a95461c4761c624f2263725aca79eeaefd36cad", "sha256": "0za77agy25pj14hi93rjc1ib79l4q43lc5crgwnsc9d72pr8cwwm"}}, {"name": "typescript", "source": {"git": "https://github.com/tree-sitter/tree-sitter-typescript", "rev": "6aac031ad88dd6317f02ac0bb27d099a553a7d8c", "subpath": "typescript", "sha256": "012fyvk95pr11anypsi1cyxgj3has8zqlj74fwmcxd9f8pk7c595"}}, {"name": "tsx", "source": {"git": "https://github.com/tree-sitter/tree-sitter-typescript", "rev": "6aac031ad88dd6317f02ac0bb27d099a553a7d8c", "subpath": "tsx", "sha256": "012fyvk95pr11anypsi1cyxgj3has8zqlj74fwmcxd9f8pk7c595"}}, {"name": "css", "source": {"git": "https://github.com/tree-sitter/tree-sitter-css", "rev": "769203d0f9abe1a9a691ac2b9fe4bb4397a73c51", "sha256": "05875jmkkklx0b5g1h4qc8cbgcj8mr1n8slw7hsn0wssn7yn42z5"}}, {"name": "scss", "source": {"git": "https://github.com/serenadeai/tree-sitter-scss", "rev": "c478c6868648eff49eb04a4df90d703dc45b312a", "sha256": "15r3jiv36hzx2pmjmp63am3pbc01s52z36xfraa1aw4wlx7lqnq4"}}, {"name": "html", "source": {"git": "https://github.com/tree-sitter/tree-sitter-html", "rev": "29f53d8f4f2335e61bf6418ab8958dac3282077a", "sha256": "0wadphmgndj4vq9mg258624pj0klspbpcx8qlc6f8by5xbshvkmz"}}, {"name": "python", "source": {"git": "https://github.com/tree-sitter/tree-sitter-python", "rev": "de221eccf9a221f5b85474a553474a69b4b5784d", "sha256": "1mp2rqv6p2nla0sh1s5hprq32b9nkwbj2q21dcpvdcg6gack1sdf"}}, {"name": "nickel", "source": {"git": "https://github.com/nickel-lang/tree-sitter-nickel", "rev": "9d83db400b6c11260b9106f131f93ddda8131933", "sha256": "0rm63fnxja59zzkm7gz4vbzics8mdf7d6ijazcy9394kdqrcdzi6"}}, {"name": "nix", "source": {"git": "https://github.com/nix-community/tree-sitter-nix", "rev": "1b69cf1fa92366eefbe6863c184e5d2ece5f187d", "sha256": "0ls9djhpbbnjvd6b3166zjy92di0927f70720b57j2d3925538i5"}}, {"name": "ruby", "source": {"git": "https://github.com/tree-sitter/tree-sitter-ruby", "rev": "206c7077164372c596ffa8eaadb9435c28941364", "sha256": "1pqr24bj68lgi1w2cblr8asfby681l3032jrppq4n9x5zm23fi6n"}}, {"name": "bash", "source": {"git": "https://github.com/tree-sitter/tree-sitter-bash", "rev": "275effdfc0edce774acf7d481f9ea195c6c403cd", "sha256": "14ficjp82cdamylgx090z3rkr5b2q04i2w3854yavli9zf57lwpr"}}, {"name": "php", "source": {"git": "https://github.com/tree-sitter/tree-sitter-php", "rev": "f860e598194f4a71747f91789bf536b393ad4a56", "sha256": "02yc5b3qps8ghsmy4b5m5kldyr5pnqz9yw663v13pnz92r84k14g"}}, {"name": "twig", "source": {"git": "https://github.com/gbprod/tree-sitter-twig", "rev": "807b293fec3fead64f54c64fdf6fb05516c032b9", "sha256": "17ifa0k4z8gcs54b0hvaibdhnfpa6r54qr82c8j5p1fzahrsdb3i"}}, {"name": "latex", "source": {"git": "https://github.com/latex-lsp/tree-sitter-latex", "rev": "8c75e93cd08ccb7ce1ccab22c1fbd6360e3bcea6", "sha256": "0lc42x604f04x3kkp88vyqa5dx90wqyisiwl7nn861lyxl6phjnf"}}, {"name": "bibtex", "source": {"git": "https://github.com/latex-lsp/tree-sitter-bibtex", "rev": "ccfd77db0ed799b6c22c214fe9d2937f47bc8b34", "sha256": "0m7f3dkqbmy8x1bhl11m8f4p6n76wfvh99rp46zrqv39355nw1y2"}}, {"name": "lean", "source": {"git": "https://github.com/Julian/tree-sitter-lean", "rev": "d98426109258b266e1e92358c5f11716d2e8f638", "sha256": "0sc5h0fan8cmpxxf2jizky0ynmr81qs9q7xgh9zrmdi69r59p0sk"}}, {"name": "julia", "source": {"git": "https://github.com/tree-sitter/tree-sitter-julia", "rev": "8fb38abff74652c4faddbf04d2d5bbbc6b4bae25", "sha256": "06h5nyxw72z3w5a62y59332w2xg90sm3c2j6na7vvf7nark7vb8v"}}, {"name": "java", "source": {"git": "https://github.com/tree-sitter/tree-sitter-java", "rev": "09d650def6cdf7f479f4b78f595e9ef5b58ce31e", "sha256": "0440xh8x8rkbdlc1f1ail9wzl4583l29ic43x9lzl8290bm64q5l"}}, {"name": "ledger", "source": {"git": "https://github.com/cbarrete/tree-sitter-ledger", "rev": "1f864fb2bf6a87fe1b48545cc6adc6d23090adf7", "sha256": "1qxdad40nladdnq6d2s1z7fxlwjz8llpj85da792pv7p7dwh95vd"}}, {"name": "beancount", "source": {"git": "https://github.com/polarmutex/tree-sitter-beancount", "rev": "4cbd1f09cd07c1f1fabf867c2cf354f9da53cc4c", "sha256": "0igv4nal56d4ppj9zpdjc9i49r755dcvz3csfrps0d0p2v47y7sj"}}, {"name": "ocaml", "source": {"git": "https://github.com/tree-sitter/tree-sitter-ocaml", "rev": "23d419ba45789c5a47d31448061557716b02750a", "subpath": "ocaml", "sha256": "1bh3afd3iix0gf6ldjngf2c65nyfdwvbmsq25gcxm04jwbg9c6k8"}}, {"name": "ocaml-interface", "source": {"git": "https://github.com/tree-sitter/tree-sitter-ocaml", "rev": "23d419ba45789c5a47d31448061557716b02750a", "subpath": "interface", "sha256": "1bh3afd3iix0gf6ldjngf2c65nyfdwvbmsq25gcxm04jwbg9c6k8"}}, {"name": "lua", "source": {"git": "https://github.com/MunifTanjim/tree-sitter-lua", "rev": "887dfd4e83c469300c279314ff1619b1d0b85b91", "sha256": "1lv3mp0xm5ac9440gcskcxy0hzsnddvcysix1k5axy1cl4vr8bz6"}}, {"name": "svelte", "source": {"git": "https://github.com/Himujjal/tree-sitter-svelte", "rev": "349a5984513b4a4a9e143a6e746120c6ff6cf6ed", "sha256": "0yyzp836c2q4k5dpywb5m5dxh8h53f3l5gcm5qi5bb8qisvccm6n"}}, {"name": "vue", "source": {"git": "https://github.com/ikatyang/tree-sitter-vue", "rev": "91fe2754796cd8fba5f229505a23fa08f3546c06", "sha256": "0l0kqy9ajm5izqcywd39aavgmc281s8qrhmjkbwl6r8arfj8vsrm"}}, {"name": "yaml", "source": {"git": "https://github.com/ikatyang/tree-sitter-yaml", "rev": "0e36bed171768908f331ff7dff9d956bae016efb", "sha256": 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"02v08hs9wirdzfx9a7c3kpn0cpc9i867pw28qka0fid9q537hnbb"}}, {"name": "wast", "source": {"git": "https://github.com/wasm-lsp/tree-sitter-wasm", "rev": "2ca28a9f9d709847bf7a3de0942a84e912f59088", "subpath": "wast", "sha256": "02v08hs9wirdzfx9a7c3kpn0cpc9i867pw28qka0fid9q537hnbb"}}, {"name": "d", "source": {"git": "https://github.com/gdamore/tree-sitter-d", "rev": "601c4a1e8310fb2f3c43fa8a923d0d27497f3c04", "sha256": "1ml1589pjb2sknsmz770ywfw37dvypnf1576qs9473r6cj4ng496"}}, {"name": "vhs", "source": {"git": "https://github.com/charmbracelet/tree-sitter-vhs", "rev": "c6d81f34c011c29ee86dd73b45a8ecc9f2e2bdaf", "sha256": "1pdz99rdvjf82vyfsp7g6dsgjjibfj5w37rdyix41lvwiyh9nkgr"}}, {"name": "kdl", "source": {"git": "https://github.com/Unoqwy/tree-sitter-kdl", "rev": "e1cd292c6d15df6610484e1d4b5c987ecad52373", "sha256": "13gj38j0lplnvf432smr50z84brfz2ld28qvqvhy6j6hd09b9xk3"}}, {"name": "xml", "source": {"git": "https://github.com/RenjiSann/tree-sitter-xml", "rev": "48a7c2b6fb9d515577e115e6788937e837815651", "sha256": "04jpcxmb9pwam5q6l6s5kvmkzfcnar8yvl3xm5i5rjnzfyvdgkzi"}}, {"name": "dtd", "source": {"git": "https://github.com/KMikeeU/tree-sitter-dtd", "rev": "6116becb02a6b8e9588ef73d300a9ba4622e156f", "sha256": "1gs1gkk20khmvz10ikhym9yqkcn5km5hq4hz4jyxdz67jzpbbbls"}}, {"name": "wit", "source": {"git": "https://github.com/hh9527/tree-sitter-wit", "rev": "c917790ab9aec50c5fd664cbfad8dd45110cfff3", "sha256": "08bpcmg2hdc8fyglhy311cx5i1brc798h8aicaxk52wgypv31rz7"}}, {"name": "ini", "source": {"git": "https://github.com/justinmk/tree-sitter-ini", "rev": "4d247fb876b4ae6b347687de4a179511bf67fcbc", "sha256": "08z3281q9vq3lr3mcj4cm6zh2bsg9jhyrxfqfann9ixklvzglkn6"}}, {"name": "bicep", "source": {"git": "https://github.com/the-mikedavis/tree-sitter-bicep", "rev": "d8e097fcfa143854861ef737161163a09cc2916b", "sha256": "1zm5i4723afmd95lg1xlrh0v2rdy116l87m4jcdfzzynls57zdhp"}}, {"name": "qmljs", "source": {"git": "https://github.com/yuja/tree-sitter-qmljs", "rev": "0b2b25bcaa7d4925d5f0dda16f6a99c588a437f1", "sha256": "0sgylcj8bfsiyjh11cfzpzywk66xi9clvbcihryk6qkpndz0pzqx"}}, {"name": "mermaid", "source": {"git": "https://github.com/monaqa/tree-sitter-mermaid", "rev": "d787c66276e7e95899230539f556e8b83ee16f6d", "sha256": "106w00y6l1fnjakaz9biqk546h2xy0yzr3wmg0yz6fihzj6kf117"}}, {"name": "matlab", "source": {"git": "https://github.com/mstanciu552/tree-sitter-matlab", "rev": "2d5d3d5193718a86477d4335aba5b34e79147326", "sha256": "1iab96dkf4zbcza4xpai76y7fy5kvgmv4ibjpa3ij588fcbvz5j6"}}, {"name": "ponylang", "source": {"git": "https://github.com/mfelsche/tree-sitter-ponylang", "rev": "ef66b151bc2604f431b5668fcec4747db4290e11", "sha256": "08g0a3kmv71rq86sizyikzsv5h2bdg8vcdiln7vrl482dczgxaky"}}, {"name": "dhall", "source": {"git": "https://github.com/jbellerb/tree-sitter-dhall", "rev": "affb6ee38d629c9296749767ab832d69bb0d9ea8", "sha256": "0r4f4w2jhm2hyvh3r3phdjhigsh0an8g4p21cbz8ldkld8ma9lxb"}}, {"name": "pem", "source": {"git": "https://github.com/mtoohey31/tree-sitter-pem", "rev": "be67a4330a1aa507c7297bc322204f936ec1132c", "sha256": "144gsh1cw3vzrgy95fvx7ld6gp0fq1v0mzmll0liiqgyrjsxda3h"}}, {"name": "passwd", "source": {"git": "https://github.com/ath3/tree-sitter-passwd", "rev": "20239395eacdc2e0923a7e5683ad3605aee7b716", "sha256": "03j18mx4g901q70kpy39hayh4snwis62svx6ir5015cvjz4fwiyx"}}, {"name": "hosts", "source": {"git": "https://github.com/ath3/tree-sitter-hosts", "rev": "301b9379ce7dfc8bdbe2c2699a6887dcb73953f9", "sha256": "0sgpybvwrvpw0lvk2s96ppyh8132g2vfjyif43yg08zlj06mvjbz"}}, {"name": "uxntal", "source": {"git": "https://github.com/Jummit/tree-sitter-uxntal", "rev": "9297e95ef74380b0ad84c4fd98f91e9f6e4319e6", "sha256": "1y6iws0z8likm8n1v6mi2jma5c7jvga04d9k30xqifpln8hm4qad"}}, {"name": "yuck", "source": {"git": "https://github.com/Philipp-M/tree-sitter-yuck", "rev": "e3d91a3c65decdea467adebe4127b8366fa47919", "sha256": "12zf5zqxh6farah2michxjhaxf97bal3x2pgrzfcp0wxz6fkns4z"}}, {"name": "prql", "source": {"git": "https://github.com/PRQL/tree-sitter-prql", "rev": "3f27cac466f030ee7d985d91eba5470e01dd21ea", "sha256": "0gp7z7ymqf15wagbik480hxm8p9xxlzkbnk7204742hdrl111zl6"}}, {"name": "po", "source": {"git": "https://github.com/erasin/tree-sitter-po", "rev": "417cee9abb2053ed26b19e7de972398f2da9b29e", "sha256": "1sm6hcyma29rw6shim4h27s0pmyby1yy4bjn9dcv9362xvanhacb"}}, {"name": "nasm", "source": {"git": "https://github.com/naclsn/tree-sitter-nasm", "rev": "a0db15db6fcfb1bf2cc8702500e55e558825c48b", "sha256": "1q4xcl0ypf0als770zpg0vv0pfxr2ysxl2vqxhc3m84s3id31sav"}}, {"name": "rst", "source": {"git": "https://github.com/stsewd/tree-sitter-rst", "rev": "25e6328872ac3a764ba8b926aea12719741103f1", "sha256": "0f53jmpjh2kcl9srwwwb7a5k24729ig96m87qjj99myqfnzahw43"}}, {"name": "capnp", "source": {"git": "https://github.com/amaanq/tree-sitter-capnp", "rev": "fc6e2addf103861b9b3dffb82c543eb6b71061aa", "sha256": "1gcz5v7i1imdsd7vxzj41iflsxx77zvvy9ngn95l8kg6rz8y3b0l"}}, {"name": "smithy", "source": {"git": "https://github.com/indoorvivants/tree-sitter-smithy", "rev": "cf8c7eb9faf7c7049839585eac19c94af231e6a0", "sha256": "0k7gfpa3pcj1ji34k0kwk1xbadkgjadfg36xfwns1fmlwzmr7jnx"}}, {"name": "vhdl", "source": {"git": "https://github.com/teburd/tree-sitter-vhdl", "rev": "c57313adee2231100db0a7880033f6865deeadb2", "sha256": "142flxd5yqg5aqx507wgqfkmgykjw5kwjq44s1g2gdgscjq4bm64"}}, {"name": "rego", "source": {"git": "https://github.com/FallenAngel97/tree-sitter-rego", "rev": "b2667c975f07b33be3ceb83bea5cfbad88095866", "sha256": "18qw5ahx6qcfq9gs6gcakl178gnnryksv6gyamyd6vypz20kwz6b"}}, {"name": "nim", "source": {"git": "https://github.com/aMOPel/tree-sitter-nim", "rev": "240239b232550e431d67de250d1b5856209e7f06", "sha256": "0gryfjqm2x9biqipzjqhasizm0zlg4b3lykcf2w8bv6wc0q0mbsh"}}, {"name": "hurl", "source": {"git": "https://github.com/pfeiferj/tree-sitter-hurl", "rev": "264c42064b61ee21abe88d0061f29a0523352e22", "sha256": "1figdv60w1a8nyfkqih1rsyzd9xq2dpcyv9l75ddja7k09p0rzsz"}}, {"name": "markdoc", "source": {"git": "https://github.com/markdoc-extra/tree-sitter-markdoc", "rev": "5ffe71b29e8a3f94823913ea9cea51fcfa7e3bf8", "sha256": "0xrrkxjbchbaj04z94l91d79jrrwx6zkafcbwig5851lfzsjbadc"}}, {"name": "opencl", "source": {"git": "https://github.com/lefp/tree-sitter-opencl", "rev": "8e1d24a57066b3cd1bb9685bbc1ca9de5c1b78fb", "sha256": "0pqfjd3sn1m8pqkj5hc3bf235jk8v7llh0xmw4470v8v2hw8ladp"}}, {"name": "just", "source": {"git": "https://github.com/IndianBoy42/tree-sitter-just", "rev": "8af0aab79854aaf25b620a52c39485849922f766", "sha256": "15hl3dsr5kxjl1kl9md2gb9bwj0ni54d9k6jv1h74b3psf4qb0l5"}}] diff --git a/pkgs/applications/editors/helix/update.py b/pkgs/applications/editors/helix/update.py deleted file mode 100755 index 196a393ae83cc..0000000000000 --- a/pkgs/applications/editors/helix/update.py +++ /dev/null @@ -1,47 +0,0 @@ -#! /usr/bin/env nix-shell -#! nix-shell -i python3 -p nix-update python3 python3Packages.requests python3.pkgs.tomlkit nix-prefetch-git -import tomlkit -import json -import requests -import subprocess -from pathlib import Path - -latest_release_url = "https://api.github.com/repos/helix-editor/helix/releases/latest" - - -def get_latest_release(): - res = requests.get(latest_release_url) - res.raise_for_status() - return res.json()["tag_name"] - - -def get_grammar_config(): - res = requests.get(f"https://raw.githubusercontent.com/helix-editor/helix/{version}/languages.toml") - res.raise_for_status() - return tomlkit.parse(res.text)["grammar"] - - -def calculate_sha256(url, rev): - out = subprocess.check_output([ - "nix-prefetch-git", "--quiet", - "--url", url, - "--rev", rev]) - return json.loads(out)["sha256"] - - -version = get_latest_release() -grammars = get_grammar_config() -for grammar in grammars: - if grammar["source"].get("git") is not None: - grammar["source"]["sha256"] = calculate_sha256( - grammar["source"]["git"], grammar["source"]["rev"]) - -json_grammars = json.dumps(grammars) - -with open(Path(__file__).parent / "language-grammars.json", "w") as file: - file.write(json_grammars + "\n") - -subprocess.run([ - "nix-update", "helix", - "--version", version, -]) diff --git a/pkgs/applications/editors/jetbrains/default.nix b/pkgs/applications/editors/jetbrains/default.nix index 8450fea7acba5..d49d099971ab1 100644 --- a/pkgs/applications/editors/jetbrains/default.nix +++ b/pkgs/applications/editors/jetbrains/default.nix @@ -93,6 +93,21 @@ let }; }); + buildDataSpell = { pname, version, src, license, description, wmClass, ... }: + (mkJetBrainsProduct { + inherit pname version src wmClass jdk; + product = "DataSpell"; + meta = with lib; { + homepage = "https://www.jetbrains.com/dataspell/"; + inherit description license platforms; + longDescription = '' + DataSpell is a new IDE from JetBrains built for Data Scientists. + Mainly it integrates Jupyter notebooks in the IntelliJ platform. + ''; + maintainers = with maintainers; [ leona ]; + }; + }); + buildGateway = { pname, version, src, license, description, wmClass, product, ... }: (mkJetBrainsProduct { inherit pname version src wmClass jdk product; @@ -320,6 +335,19 @@ in update-channel = products.datagrip.update-channel; }; + dataspell = buildDataSpell rec { + pname = "dataspell"; + version = products.dataspell.version; + description = "The IDE for Professional Data Scientists"; + license = lib.licenses.unfree; + src = fetchurl { + url = products.dataspell.url; + sha256 = products.dataspell.sha256; + }; + wmClass = "jetbrains-dataspell"; + update-channel = products.dataspell.update-channel; + }; + gateway = buildGateway rec { pname = "gateway"; product = "JetBrains Gateway"; diff --git a/pkgs/applications/editors/jetbrains/update.py b/pkgs/applications/editors/jetbrains/update.py index 1c22acf8e7477..fe57f75c72e13 100755 --- a/pkgs/applications/editors/jetbrains/update.py +++ b/pkgs/applications/editors/jetbrains/update.py @@ -64,7 +64,7 @@ def update_product(name, product): build = latest_build(channel) new_version = build["@version"] new_build_number = build["@fullNumber"] - if all(x not in channel["@name"] for x in ["EAP", "Gateway"]): + if "EAP" not in channel["@name"]: version_or_build_number = new_version else: version_or_build_number = new_build_number diff --git a/pkgs/applications/editors/jetbrains/versions.json b/pkgs/applications/editors/jetbrains/versions.json index 9785ea1eefe38..8e780061a9c54 100644 --- a/pkgs/applications/editors/jetbrains/versions.json +++ b/pkgs/applications/editors/jetbrains/versions.json @@ -16,13 +16,21 @@ "url": "https://download.jetbrains.com/datagrip/datagrip-2023.1.2.tar.gz", "build_number": "231.9011.35" }, + "dataspell": { + "update-channel": "DataSpell RELEASE", + "url-template": "https://download.jetbrains.com/python/dataspell-{version}.tar.gz", + "version": "2023.1", + "sha256": "12856b7571ff789a427361cfcb4cb1743e7f3af77f611ceda57aafe847328865", + "url": "https://download.jetbrains.com/python/dataspell-2023.1.tar.gz", + "build_number": "231.8109.197" + }, "gateway": { "update-channel": "Gateway RELEASE", "url-template": "https://download.jetbrains.com/idea/gateway/JetBrainsGateway-{version}.tar.gz", - "version": "2023.1.1", - "sha256": "217196806daebd14e604d13247862e44e6a0b0b9f115f1b9ceadbcfb064b3c3c", - "url": "https://download.jetbrains.com/idea/gateway/JetBrainsGateway-2023.1.1.tar.gz", - "build_number": "231.8770.69" + "version": "2023.1.2", + "sha256": "fab46521e7a4558a166e3b11d86ca2312a9807e69419925ed5743ab4f421ab96", + "url": "https://download.jetbrains.com/idea/gateway/JetBrainsGateway-2023.1.2.tar.gz", + "build_number": "231.9011.34" }, "goland": { "update-channel": "GoLand RELEASE", @@ -123,13 +131,21 @@ "url": "https://download.jetbrains.com/datagrip/datagrip-2023.1.2.dmg", "build_number": "231.9011.35" }, + "dataspell": { + "update-channel": "DataSpell RELEASE", + "url-template": "https://download.jetbrains.com/python/dataspell-{version}.dmg", + "version": "2023.1", + "sha256": "dc118f466b6e5fa3e6c449f25977d5d1fc6746c004a000464802c535a1bdaa90", + "url": "https://download.jetbrains.com/python/dataspell-2023.1.dmg", + "build_number": "231.8109.197" + }, "gateway": { "update-channel": "Gateway RELEASE", "url-template": "https://download.jetbrains.com/idea/gateway/JetBrainsGateway-{version}.dmg", - "version": "2023.1.1", - "sha256": "e580bf5bd657b721677fec0250ce582adb1cf92daa1ac065b56fc2d8148fac97", - "url": "https://download.jetbrains.com/idea/gateway/JetBrainsGateway-2023.1.1.dmg", - "build_number": "231.8770.69" + "version": "2023.1.2", + "sha256": "320beadb9eb50f48eb431bcd2c88ec1c2e7e0ef2f1f2414aa3842de5930d79ff", + "url": "https://download.jetbrains.com/idea/gateway/JetBrainsGateway-2023.1.2.dmg", + "build_number": "231.9011.34" }, "goland": { "update-channel": "GoLand RELEASE", @@ -230,13 +246,21 @@ "url": "https://download.jetbrains.com/datagrip/datagrip-2023.1.2-aarch64.dmg", "build_number": "231.9011.35" }, + "dataspell": { + "update-channel": "DataSpell RELEASE", + "url-template": "https://download.jetbrains.com/python/dataspell-{version}-aarch64.dmg", + "version": "2023.1", + "sha256": "7b5b4388303bf7d381597995e3f4d5684c0f60a4e5ad5a4481ab4e451be6e2cf", + "url": "https://download.jetbrains.com/python/dataspell-2023.1-aarch64.dmg", + "build_number": "231.8109.197" + }, "gateway": { "update-channel": "Gateway RELEASE", "url-template": "https://download.jetbrains.com/idea/gateway/JetBrainsGateway-{version}-aarch64.dmg", - "version": "2023.1.1", - "sha256": "ab0c773315a6d8abcaae75440f7fc122a7e80237eddaa3487c3222a52a95497f", - "url": "https://download.jetbrains.com/idea/gateway/JetBrainsGateway-2023.1.1-aarch64.dmg", - "build_number": "231.8770.69" + "version": "2023.1.2", + "sha256": "338edd281715b14193834ed01947c6161865e58d1416557316c2b298401a0272", + "url": "https://download.jetbrains.com/idea/gateway/JetBrainsGateway-2023.1.2-aarch64.dmg", + "build_number": "231.9011.34" }, "goland": { "update-channel": "GoLand RELEASE", diff --git a/pkgs/applications/editors/lapce/Cargo.lock b/pkgs/applications/editors/lapce/Cargo.lock index 2ef80a39f7032..11496a2d55bfd 100644 --- a/pkgs/applications/editors/lapce/Cargo.lock +++ b/pkgs/applications/editors/lapce/Cargo.lock @@ -2556,7 +2556,7 @@ dependencies = [ [[package]] name = "lapce" -version = "0.2.7" +version = "0.2.8" dependencies = [ "lapce-proxy", "lapce-ui", @@ -2564,7 +2564,7 @@ dependencies = [ [[package]] name = "lapce-core" -version = "0.2.7" +version = "0.2.8" dependencies = [ "anyhow", "arc-swap", @@ -2637,7 +2637,7 @@ dependencies = [ [[package]] name = "lapce-data" -version = "0.2.7" +version = "0.2.8" dependencies = [ "alacritty_terminal", "anyhow", @@ -2689,7 +2689,7 @@ dependencies = [ [[package]] name = "lapce-proxy" -version = "0.2.7" +version = "0.2.8" dependencies = [ "alacritty_terminal", "anyhow", @@ -2742,7 +2742,7 @@ dependencies = [ [[package]] name = "lapce-rpc" -version = "0.2.7" +version = "0.2.8" dependencies = [ "anyhow", "crossbeam-channel", @@ -2758,7 +2758,7 @@ dependencies = [ [[package]] name = "lapce-ui" -version = "0.2.7" +version = "0.2.8" dependencies = [ "Inflector", "alacritty_terminal", diff --git a/pkgs/applications/editors/lapce/default.nix b/pkgs/applications/editors/lapce/default.nix index 699c506f648ec..01ae7308ee064 100644 --- a/pkgs/applications/editors/lapce/default.nix +++ b/pkgs/applications/editors/lapce/default.nix @@ -24,21 +24,19 @@ rustPlatform.buildRustPackage rec { pname = "lapce"; - version = "0.2.7"; + version = "0.2.8"; src = fetchFromGitHub { owner = "lapce"; repo = pname; rev = "v${version}"; - sha256 = "sha256-xq/xLoVvETGp+Yxlh3wbg74R+U9eqjFOKJyt/AUybvU="; + sha256 = "sha256-cfQQ+PaInUB6B61sZ9iS/zt3L6Vc/vPOJTtEwR0BLco="; }; cargoLock = { lockFile = ./Cargo.lock; outputHashes = { "druid-0.7.0" = "sha256-PJH+Y5PScM6KnPeb5lBLKpqe9nbG3bXIJK2y4V1IM9o="; - "druid-derive-0.4.0" = "sha256-PJH+Y5PScM6KnPeb5lBLKpqe9nbG3bXIJK2y4V1IM9o="; - "druid-shell-0.7.0" = "sha256-PJH+Y5PScM6KnPeb5lBLKpqe9nbG3bXIJK2y4V1IM9o="; "font-kit-0.11.0" = "sha256-MsUbFhWd3GdqchzwrRPuzpz3mNYde00HwA9EIRBc2SQ="; "fount-0.1.0" = "sha256-ptPnisGuzip3tQUuwtPU+ETiIzxMvIgAvlIGyGw/4wI="; "human-sort-0.2.2" = "sha256-tebgIJGXOY7pwWRukboKAzXY47l4Cn//0xMKQTaGu8w="; diff --git a/pkgs/applications/editors/ldtk/default.nix b/pkgs/applications/editors/ldtk/default.nix index ecdb9946ce260..3ca39668cc49b 100644 --- a/pkgs/applications/editors/ldtk/default.nix +++ b/pkgs/applications/editors/ldtk/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, fetchurl, makeWrapper, makeDesktopItem, copyDesktopItems, unzip -, appimage-run }: +, appimage-run, nix-update-script }: stdenv.mkDerivation rec { pname = "ldtk"; @@ -47,6 +47,8 @@ stdenv.mkDerivation rec { }) ]; + passthru.updateScript = nix-update-script { }; + meta = with lib; { description = "Modern, lightweight and efficient 2D level editor"; homepage = "https://ldtk.io/"; diff --git a/pkgs/applications/editors/neovim/default.nix b/pkgs/applications/editors/neovim/default.nix index cdc274604d2c3..9294e74231597 100644 --- a/pkgs/applications/editors/neovim/default.nix +++ b/pkgs/applications/editors/neovim/default.nix @@ -1,5 +1,4 @@ { lib, stdenv, fetchFromGitHub, cmake, gettext, msgpack, libtermkey, libiconv -, fetchpatch , libuv, lua, ncurses, pkg-config , unibilium, gperf , libvterm-neovim @@ -37,13 +36,13 @@ let in stdenv.mkDerivation rec { pname = "neovim-unwrapped"; - version = "0.9.0"; + version = "0.9.1"; src = fetchFromGitHub { owner = "neovim"; repo = "neovim"; rev = "v${version}"; - hash = "sha256-4uCPWnjSMU7ac6Q3LT+Em8lVk1MuSegxHMLGQRtFqAs="; + hash = "sha256-G51qD7GklEn0JrneKSSqDDx0Odi7W2FjdQc0ZDE9ZK4="; }; patches = [ @@ -51,14 +50,6 @@ in # necessary so that nix can handle `UpdateRemotePlugins` for the plugins # it installs. See https://github.com/neovim/neovim/issues/9413. ./system_rplugin_manifest.patch - - # fix bug with the gsub directive - # https://github.com/neovim/neovim/pull/23015 - (fetchpatch { - name = "use-the-correct-replacement-args-for-gsub-directive.patch"; - url = "https://github.com/neovim/neovim/commit/ccc0980f86c6ef9a86b0e5a3a691f37cea8eb776.patch"; - hash = "sha256-sZWM6M8jCL1e72H0bAc51a6FrH0mFFqTV1gGLwKT7Zo="; - }) ]; dontFixCmake = true; diff --git a/pkgs/applications/editors/orbiton/default.nix b/pkgs/applications/editors/orbiton/default.nix index 840fc180e621a..878c587e5abda 100644 --- a/pkgs/applications/editors/orbiton/default.nix +++ b/pkgs/applications/editors/orbiton/default.nix @@ -4,13 +4,13 @@ buildGoModule rec { pname = "orbiton"; - version = "2.62.0"; + version = "2.62.1"; src = fetchFromGitHub { owner = "xyproto"; repo = "orbiton"; rev = "v${version}"; - hash = "sha256-DmS0rn1v9zksSzO7FVl5YsIIXvhQ3zhSBC/i7tosdag="; + hash = "sha256-viJlbBzV6zA/RbdF6kTNbER3ECayqS9hIns60kOa47c="; }; vendorHash = null; diff --git a/pkgs/applications/editors/pixelorama/default.nix b/pkgs/applications/editors/pixelorama/default.nix index 20dcd766b17ee..ab5539ffb47f2 100644 --- a/pkgs/applications/editors/pixelorama/default.nix +++ b/pkgs/applications/editors/pixelorama/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, godot-headless, godot-export-templates }: +{ lib, stdenv, fetchFromGitHub, godot-headless, godot-export-templates, nix-update-script }: let preset = @@ -47,6 +47,8 @@ in stdenv.mkDerivation rec { runHook postInstall ''; + passthru.updateScript = nix-update-script { }; + meta = with lib; { homepage = "https://orama-interactive.itch.io/pixelorama"; description = "A free & open-source 2D sprite editor, made with the Godot Engine!"; diff --git a/pkgs/applications/editors/tecoc/default.nix b/pkgs/applications/editors/tecoc/default.nix index f5ad8d947c7bd..94889a13ef6db 100644 --- a/pkgs/applications/editors/tecoc/default.nix +++ b/pkgs/applications/editors/tecoc/default.nix @@ -2,17 +2,18 @@ , lib , fetchFromGitHub , ncurses +, unstableGitUpdater }: -stdenv.mkDerivation rec { +stdenv.mkDerivation (finalAttrs: { pname = "tecoc"; - version = "unstable-2020-11-03"; + version = "unstable-2023-04-21"; src = fetchFromGitHub { owner = "blakemcbride"; repo = "TECOC"; - rev = "79fcb6cfd6c5f9759f6ec46aeaf86d5806b13a0b"; - sha256 = "sha256-JooLvoh9CxLHLOXXxE7zA7R9yglr9BGUwX4nrw2/vIw="; + rev = "021d1d15242b9d6c84d70c9ffcf1871793898f0a"; + hash = "sha256-VGIO+uiAZkdzLYmJztmnKTS4HDIVow4AimaneHj7E1M="; }; buildInputs = [ ncurses ]; @@ -27,29 +28,34 @@ stdenv.mkDerivation rec { then "makefile.win" else "makefile.linux"; # I think Linux is a safe default... - makeFlags = [ "CC=${stdenv.cc}/bin/cc" "-C src/" ]; - - preInstall = '' - install -d $out/bin $out/share/doc/${pname}-${version} $out/lib/teco/macros - ''; + makeFlags = [ "CC=${stdenv.cc.targetPrefix}cc" "-C src/" ]; installPhase = '' runHook preInstall + + install -d $out/bin $out/share/doc/tecoc $out/lib/teco/macros install -m755 src/tecoc $out/bin - install -m644 src/aaout.txt doc/* $out/share/doc/${pname}-${version} + install -m644 src/aaout.txt doc/* $out/share/doc/tecoc install -m644 lib/* lib2/* $out/lib/teco/macros + runHook postInstall ''; - postInstall = '' - (cd $out/bin - ln -s tecoc Make - ln -s tecoc mung - ln -s tecoc teco - ln -s tecoc Inspect ) + postFixup = '' + pushd $out/bin + ln -s tecoc Make + ln -s tecoc mung + ln -s tecoc teco + ln -s tecoc Inspect + popd ''; - meta = with lib; { + passthru.updateScript = unstableGitUpdater { + url = finalAttrs.meta.homepage; + }; + + meta = { + homepage = "https://github.com/blakemcbride/TECOC"; description = "A clone of the good old TECO editor"; longDescription = '' For those who don't know: TECO is the acronym of Tape Editor and COrrector @@ -65,11 +71,10 @@ stdenv.mkDerivation rec { TECOC is a portable C implementation of TECO-11. ''; - homepage = "https://github.com/blakemcbride/TECOC"; license = { url = "https://github.com/blakemcbride/TECOC/tree/master/doc/readme-1st.txt"; }; - maintainers = [ maintainers.AndersonTorres ]; - platforms = platforms.unix; + maintainers = [ lib.maintainers.AndersonTorres ]; + platforms = lib.platforms.unix; }; -} +}) diff --git a/pkgs/applications/editors/thonny/default.nix b/pkgs/applications/editors/thonny/default.nix index 40ba0701ce717..a6d698b65a131 100644 --- a/pkgs/applications/editors/thonny/default.nix +++ b/pkgs/applications/editors/thonny/default.nix @@ -42,7 +42,6 @@ buildPythonApplication rec { preFixup = '' wrapProgram "$out/bin/thonny" \ - --set TK_LIBRARY "${tk}/lib/${tk.libPrefix}" \ --prefix PYTHONPATH : $PYTHONPATH:$(toPythonPath ${python3.pkgs.jedi}) ''; @@ -64,6 +63,6 @@ buildPythonApplication rec { homepage = "https://www.thonny.org/"; license = licenses.mit; maintainers = with maintainers; [ leenaars ]; - platforms = platforms.linux; + platforms = platforms.unix; }; } diff --git a/pkgs/applications/editors/vim/common.nix b/pkgs/applications/editors/vim/common.nix index e946139e6e832..11509795b546d 100644 --- a/pkgs/applications/editors/vim/common.nix +++ b/pkgs/applications/editors/vim/common.nix @@ -1,12 +1,12 @@ { lib, fetchFromGitHub }: rec { - version = "9.0.1441"; + version = "9.0.1562"; src = fetchFromGitHub { owner = "vim"; repo = "vim"; rev = "v${version}"; - hash = "sha256-tGWOIXx4gNMg0CB4ytUrj9bQLXw+4pl2lfgGR81+EJk="; + hash = "sha256-+QKh3CxSjwcJ+Rj9RHYHRKSZixkfA1ZCAPDIyV/Npt8="; }; enableParallelBuilding = true; diff --git a/pkgs/applications/editors/vim/ft-nix-support.patch b/pkgs/applications/editors/vim/ft-nix-support.patch deleted file mode 100644 index 274d855731fdc..0000000000000 --- a/pkgs/applications/editors/vim/ft-nix-support.patch +++ /dev/null @@ -1,20 +0,0 @@ -diff --git a/runtime/filetype.vim b/runtime/filetype.vim -index a8e6261..2b008fc 100644 ---- a/runtime/filetype.vim -+++ b/runtime/filetype.vim -@@ -2258,6 +2258,9 @@ au BufNewFile,BufRead *.zsql call s:SQL() - " Z80 assembler asz80 - au BufNewFile,BufRead *.z8a setf z8a - -+" Nix -+au BufNewFile,BufRead *.nix setf nix -+ - augroup END - - -@@ -2440,3 +2443,5 @@ endfunc - " Restore 'cpoptions' - let &cpo = s:cpo_save - unlet s:cpo_save -+ -+ diff --git a/pkgs/applications/editors/vim/configurable.nix b/pkgs/applications/editors/vim/full.nix index 8b49850d60034..dc361d8e88075 100644 --- a/pkgs/applications/editors/vim/configurable.nix +++ b/pkgs/applications/editors/vim/full.nix @@ -24,7 +24,7 @@ , netbeansSupport ? config.netbeans or true # Enable NetBeans integration support. , ximSupport ? config.vim.xim or true # less than 15KB, needed for deadkeys , darwinSupport ? config.vim.darwin or false # Enable Darwin support -, ftNixSupport ? config.vim.ftNix or true # Add .nix filetype detection and minimal syntax highlighting support +, ftNixSupport ? config.vim.ftNix or true # Add nix indentation support from vim-nix (not needed for basic syntax highlighting) }: @@ -61,7 +61,7 @@ let common = callPackage ./common.nix {}; -in stdenv.mkDerivation rec { +in stdenv.mkDerivation { pname = "vim-full"; @@ -71,7 +71,7 @@ in stdenv.mkDerivation rec { default = common.src; # latest release }; - patches = [ ./cflags-prune.diff ] ++ lib.optional ftNixSupport ./ft-nix-support.patch; + patches = [ ./cflags-prune.diff ]; configureFlags = [ "--with-features=${features}" @@ -163,10 +163,9 @@ in stdenv.mkDerivation rec { # error: '__declspec' attributes are not enabled; use '-fdeclspec' or '-fms-extensions' to enable support for __declspec attributes env.NIX_CFLAGS_COMPILE = lib.optionalString stdenv.isDarwin "-fdeclspec"; - preConfigure = "" + lib.optionalString ftNixSupport '' + preConfigure = lib.optionalString ftNixSupport '' cp ${vimPlugins.vim-nix.src}/ftplugin/nix.vim runtime/ftplugin/nix.vim cp ${vimPlugins.vim-nix.src}/indent/nix.vim runtime/indent/nix.vim - cp ${vimPlugins.vim-nix.src}/syntax/nix.vim runtime/syntax/nix.vim ''; preInstall = '' diff --git a/pkgs/applications/editors/vim/plugins/generated.nix b/pkgs/applications/editors/vim/plugins/generated.nix index 44de89c3862a4..1f73221b5a1e0 100644 --- a/pkgs/applications/editors/vim/plugins/generated.nix +++ b/pkgs/applications/editors/vim/plugins/generated.nix @@ -173,24 +173,24 @@ final: prev: LazyVim = buildVimPluginFrom2Nix { pname = "LazyVim"; - version = "2023-05-27"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "LazyVim"; repo = "LazyVim"; - rev = "88238e2109e8340fae1424f693149ff2c334ae1c"; - sha256 = "0vf85wpvyyn7fknjlsggijv5m3a1hqy30aidsk4asf52g88bapjf"; + rev = "56f092f1a8f37036253a5c1f1253d0eebac6dd61"; + sha256 = "1bf2dsy1xgxzi9fb49jgqk6pqx68079lakaa4x0slaij0k0hlvi5"; }; meta.homepage = "https://github.com/LazyVim/LazyVim/"; }; LeaderF = buildVimPluginFrom2Nix { pname = "LeaderF"; - version = "2023-05-26"; + version = "2023-05-30"; src = fetchFromGitHub { owner = "Yggdroot"; repo = "LeaderF"; - rev = "50430a7d67dc7e48498509cb85afdae021796bf3"; - sha256 = "16dkw5agac2jk6xsk1p7kssql3sv8aa1cb7frygflv2b9v9bg66v"; + rev = "5746281bb6467522e959f75939976e98da277f1e"; + sha256 = "0fxaady67l9pj8cyyfb7fxxbx84y3vxp26jy8nvsm1fsx32dw8pi"; }; meta.homepage = "https://github.com/Yggdroot/LeaderF/"; }; @@ -305,12 +305,12 @@ final: prev: SchemaStore-nvim = buildVimPluginFrom2Nix { pname = "SchemaStore.nvim"; - version = "2023-05-27"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "b0o"; repo = "SchemaStore.nvim"; - rev = "2af5eb30096600eb0dc6058814f4f3fd88d7bd33"; - sha256 = "1yz1jnlls98ajrii049xk0dy3hc1h1cv8mxrpab1bgd8r4snkzar"; + rev = "bd6b279322f0628e4a58cb8129129d6106fea56a"; + sha256 = "09spmva9yjvzq9pfyvrjhnj3kviwk275dih6y1nbclargsmm7kbl"; }; meta.homepage = "https://github.com/b0o/SchemaStore.nvim/"; }; @@ -365,12 +365,12 @@ final: prev: SpaceVim = buildVimPluginFrom2Nix { pname = "SpaceVim"; - version = "2023-05-21"; + version = "2023-05-31"; src = fetchFromGitHub { owner = "SpaceVim"; repo = "SpaceVim"; - rev = "fdd617e2a39f5f1d654cba4329638d730165b952"; - sha256 = "0b5zn67pwaxcm4qgd3zhsx3l04skgvh6m0yh12b5h30nkmbaqzyi"; + rev = "1061082e005acdd10e3b1167df37f8005fce5483"; + sha256 = "1lvnq0swjm1207p1qkldzs3jdg8xl5w1shmwf2prlrf9svy6rl8z"; }; meta.homepage = "https://github.com/SpaceVim/SpaceVim/"; }; @@ -486,12 +486,12 @@ final: prev: aerial-nvim = buildVimPluginFrom2Nix { pname = "aerial.nvim"; - version = "2023-05-27"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "stevearc"; repo = "aerial.nvim"; - rev = "01d63e5599811ddf86c8769180c3fbf6dd2ef224"; - sha256 = "0m8ywp1mhfii4rbrgpf54hfmp9m7s2ckn434ccvn5dzcgcdb749p"; + rev = "aff1bb8fecff83d3e3a2d544c4d4e6d65718bd19"; + sha256 = "0xdnalqqf5cqmwkwss8lhiwr4zb925al80wwlpjyln18hayjpii4"; fetchSubmodules = true; }; meta.homepage = "https://github.com/stevearc/aerial.nvim/"; @@ -835,24 +835,24 @@ final: prev: auto-session = buildVimPluginFrom2Nix { pname = "auto-session"; - version = "2023-05-28"; + version = "2023-05-29"; src = fetchFromGitHub { owner = "rmagatti"; repo = "auto-session"; - rev = "b6bac3accc9a753be830aa059f834b787efe2f79"; - sha256 = "0alryisld981ka3vag8qc9yvh8kfl5i1p1mp99i8i53wkzmg2qhh"; + rev = "e3234c489397b46a2b7949d6169d61b69a30c015"; + sha256 = "18c2jyp79rl68x4wfh00aln9zqm14g7vqbk7dnsxzr5vyyr6yssa"; }; meta.homepage = "https://github.com/rmagatti/auto-session/"; }; autoclose-nvim = buildVimPluginFrom2Nix { pname = "autoclose.nvim"; - version = "2023-05-25"; + version = "2023-05-29"; src = fetchFromGitHub { owner = "m4xshen"; repo = "autoclose.nvim"; - rev = "fec0b890ea2d2ab9e62c4ab48d097a0382226999"; - sha256 = "0sgd0km3l1h6zxgdhri8pkgknasdry08w1kpdd0a6jv9is9ri1n7"; + rev = "2321727fd10a6b34624723bc4747d8c09c10b7a4"; + sha256 = "0bbf4lfs6li6mdifzlk9y2z4lgksl4xpvk0h1bd2l24x768mmm0k"; }; meta.homepage = "https://github.com/m4xshen/autoclose.nvim/"; }; @@ -919,12 +919,12 @@ final: prev: barbar-nvim = buildVimPluginFrom2Nix { pname = "barbar.nvim"; - version = "2023-05-22"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "romgrk"; repo = "barbar.nvim"; - rev = "f0212c318e0f118ccb0e6166198895f78aa87efd"; - sha256 = "0aia797b9nhskkaf4ghw0xysp13xw1dfwk4izh6iby2izw10j58i"; + rev = "1a92a18e1ae470bf7e2152d6e064c733311d3adc"; + sha256 = "04lkrjgl48khy54x3da3s43l4sr0g2pp5610hkl33c5mix510cva"; }; meta.homepage = "https://github.com/romgrk/barbar.nvim/"; }; @@ -1099,12 +1099,12 @@ final: prev: bufdelete-nvim = buildVimPluginFrom2Nix { pname = "bufdelete.nvim"; - version = "2023-02-16"; + version = "2023-05-28"; src = fetchFromGitHub { owner = "famiu"; repo = "bufdelete.nvim"; - rev = "8933abc09df6c381d47dc271b1ee5d266541448e"; - sha256 = "1f2kv77273hgjmkwvsrxmpsdj2gpz8y72fz1nxgawd6h9w9ly7kf"; + rev = "ccfa2589fa68512770639839ab3850097fbbf4dc"; + sha256 = "1d0dy4i8qnbqwf7xi3hqvjhs40rh0h4mdhij6s45gxm2aj12gad2"; }; meta.homepage = "https://github.com/famiu/bufdelete.nvim/"; }; @@ -1135,12 +1135,12 @@ final: prev: bufferline-nvim = buildVimPluginFrom2Nix { pname = "bufferline.nvim"; - version = "2023-05-21"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "akinsho"; repo = "bufferline.nvim"; - rev = "32d74d5d044f7cc89892d4781a83d55ee4ed552a"; - sha256 = "00bw1br0p9gvwrirrp3byazmr51klzbl512aqcp2j4x2g9s3zksq"; + rev = "02d795081e6a24ec1fd506c513491543793d0780"; + sha256 = "1zq4vnqq5sq679nw8zvwvkkrw0gnpina2nf4iq66s8qgqiqsm43d"; }; meta.homepage = "https://github.com/akinsho/bufferline.nvim/"; }; @@ -1195,12 +1195,12 @@ final: prev: ccc-nvim = buildVimPluginFrom2Nix { pname = "ccc.nvim"; - version = "2023-05-16"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "uga-rosa"; repo = "ccc.nvim"; - rev = "78aed26e18a087501be0475443b5a623adbf6290"; - sha256 = "1lqx08xx41z5m4w9sdqyclk1ylbphp1y7lkh2sdlc4pyqx15k7c1"; + rev = "dd85d91080fbb4399505e595eef90f190d21aeab"; + sha256 = "1yw3bh3skdbj89zkyim0qf5h89ls5vnh6bfmjhkkm8c6928h502c"; }; meta.homepage = "https://github.com/uga-rosa/ccc.nvim/"; }; @@ -1447,12 +1447,12 @@ final: prev: cmp-dictionary = buildVimPluginFrom2Nix { pname = "cmp-dictionary"; - version = "2023-05-07"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "uga-rosa"; repo = "cmp-dictionary"; - rev = "97961c56bada8077d1155e1a73e37e94610e1b3f"; - sha256 = "16vn3pqqrwngb9jvzvz56pyqq936sg24874l4h5cn4lqb3k3r2z4"; + rev = "3a6035b34b67f4a9b6142086c02d9e2673fa4810"; + sha256 = "0mf7fqffvf7im702iayr1zrq45w1d9iz1cjwx6504nziy9l2d33n"; }; meta.homepage = "https://github.com/uga-rosa/cmp-dictionary/"; }; @@ -1519,12 +1519,12 @@ final: prev: cmp-git = buildVimPluginFrom2Nix { pname = "cmp-git"; - version = "2023-05-26"; + version = "2023-05-30"; src = fetchFromGitHub { owner = "petertriho"; repo = "cmp-git"; - rev = "7b292e120ef0f31586908fddfa2e7626f6dcbf98"; - sha256 = "16dflgkdpaxw5mxy7x53i668j5p66k0h8gq9z5f61sjc2v8y2gr6"; + rev = "f900a4cf117300fdc3ba31d26f8b6223ccd9c574"; + sha256 = "0sgs3ak50y46idzr4jp6iyv8gr52aznplfpmcfdd9ypfcl61ihii"; }; meta.homepage = "https://github.com/petertriho/cmp-git/"; }; @@ -1963,12 +1963,12 @@ final: prev: codeium-vim = buildVimPluginFrom2Nix { pname = "codeium.vim"; - version = "2023-05-19"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "Exafunction"; repo = "codeium.vim"; - rev = "581ba9718f4416b4107273ffbce9c0a821835832"; - sha256 = "1fnlfz3m644zbdsr7iwdlkgcnyp0p07fpcxpwrd47bl5c00sf343"; + rev = "48eaf767680e7e35b89110e0193f99520e76f666"; + sha256 = "0v99z5amg6pjh2gbvrgdrm62zgb9x0dr5v594l7sa4wziczh3kl1"; }; meta.homepage = "https://github.com/Exafunction/codeium.vim/"; }; @@ -2035,12 +2035,12 @@ final: prev: comment-nvim = buildVimPluginFrom2Nix { pname = "comment.nvim"; - version = "2023-05-03"; + version = "2023-06-01"; src = fetchFromGitHub { owner = "numtostr"; repo = "comment.nvim"; - rev = "e1fe53117aab24c378d5e6deaad786789c360123"; - sha256 = "13ypypkb63j8spg9av9i7n0yp0g4d1hwrym0f9659r0kxmzy9h88"; + rev = "c8043290f2d77f61025494d839d88e414608c460"; + sha256 = "126bbdlbsl0byxihwzj5j1lbkk1dcqrki4qh5wqa8i71d0dy7vva"; }; meta.homepage = "https://github.com/numtostr/comment.nvim/"; }; @@ -2107,12 +2107,12 @@ final: prev: compiler-explorer-nvim = buildVimPluginFrom2Nix { pname = "compiler-explorer.nvim"; - version = "2023-05-09"; + version = "2023-05-29"; src = fetchFromGitHub { owner = "krady21"; repo = "compiler-explorer.nvim"; - rev = "42979d2da0696da244f1e8f08de0a0ecaeceb718"; - sha256 = "13n7fw03yyagml8ddvqqpi9gcng7kpz4bb0j9n63g9xfirpxszvj"; + rev = "ee8e7a2808bdad67cd2acb61b5c9ffa7735c7ec9"; + sha256 = "14gb8s8j745mzbal8b7r5ziaipi1hwz25f8s66l3634bwkych4r0"; }; meta.homepage = "https://github.com/krady21/compiler-explorer.nvim/"; }; @@ -2239,12 +2239,12 @@ final: prev: copilot-lua = buildVimPluginFrom2Nix { pname = "copilot.lua"; - version = "2023-05-08"; + version = "2023-05-28"; src = fetchFromGitHub { owner = "zbirenbaum"; repo = "copilot.lua"; - rev = "653bbdc44cd569a5fd0617e5a9d3df2b1359e230"; - sha256 = "1ym30fl7aw5x5wwr5bz5n4vh1hala66z4cdqk5pisin3270b1npr"; + rev = "77e3a4907928f0813024e573b882dc879dfc0c6b"; + sha256 = "0spirmbjbqj2gnjl1843czyai8f5xdk2afwns5gqgvcdqzqd454c"; }; meta.homepage = "https://github.com/zbirenbaum/copilot.lua/"; }; @@ -2263,24 +2263,24 @@ final: prev: coq-artifacts = buildVimPluginFrom2Nix { pname = "coq.artifacts"; - version = "2023-05-28"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "ms-jpq"; repo = "coq.artifacts"; - rev = "285ebb67059b3f3bf0106e90b05931ba0c596c6c"; - sha256 = "08f5hjf3afq0vrvwhjavykji2avvyf0b1apsdad4szvfrb7sfr3p"; + rev = "c5f5546a89acc9c423d883199f641db99ba28b5b"; + sha256 = "0gz9nfq2ssv081hx84c4ydh9ijyx99dh39zw2g4jf6vvz41c1sxs"; }; meta.homepage = "https://github.com/ms-jpq/coq.artifacts/"; }; coq-thirdparty = buildVimPluginFrom2Nix { pname = "coq.thirdparty"; - version = "2023-05-28"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "ms-jpq"; repo = "coq.thirdparty"; - rev = "5e39dd1707723b883ed6fd14e9a27c8776b32531"; - sha256 = "0va96cc0wcyw5z7mkah8iyspkrr13q8v4zgnfd9ib21ai3lghq29"; + rev = "ba47209b2c029dd4b6eb42e267dc7e716b12eb5d"; + sha256 = "0m4r4k32y5dwg4z6p8xbjrq05vap9kmhrdbifapfdyn1icapna05"; }; meta.homepage = "https://github.com/ms-jpq/coq.thirdparty/"; }; @@ -2299,12 +2299,12 @@ final: prev: coq_nvim = buildVimPluginFrom2Nix { pname = "coq_nvim"; - version = "2023-05-28"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "ms-jpq"; repo = "coq_nvim"; - rev = "c1365375558fb320a90522d5a980393d7b98576d"; - sha256 = "0vkfgplbwij09lsbbkfzzmw2asca73iqbw6rhafcfid6ryihfpai"; + rev = "55ca08083cab18bb5cd1b08f2d5c295b87fce0ef"; + sha256 = "00kw18965gyxpc1i58fbgpzr10j7yvcd9hwphml8jc07y4xk11w2"; }; meta.homepage = "https://github.com/ms-jpq/coq_nvim/"; }; @@ -2551,12 +2551,12 @@ final: prev: denops-vim = buildVimPluginFrom2Nix { pname = "denops.vim"; - version = "2023-05-22"; + version = "2023-05-29"; src = fetchFromGitHub { owner = "vim-denops"; repo = "denops.vim"; - rev = "949a52412d35d56354f69bbbade6bcfe2951b8d6"; - sha256 = "1cx5i69qjnynyap3iwk226vw2lar256s76sj2i8b28jqv7vz1991"; + rev = "3b489d50ba2e034c829a09475a4002176bffbef7"; + sha256 = "19r312fl7gavd3zgi1si1yh0s9pwbh7sz64spqbsqvrlzsjm7zxb"; }; meta.homepage = "https://github.com/vim-denops/denops.vim/"; }; @@ -2853,12 +2853,12 @@ final: prev: diffview-nvim = buildVimPluginFrom2Nix { pname = "diffview.nvim"; - version = "2023-05-26"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "sindrets"; repo = "diffview.nvim"; - rev = "bff58a6ea3e081ca50049700f9848b2f84ea57be"; - sha256 = "0il9i8jdvvf29k6c7vsms37k6cdx5w19lw7614rxy3qb1328nvcx"; + rev = "6ca4cce071d527fa16c27781f98b843774ae84a7"; + sha256 = "0rra1m176bhbj6w83mi9ay078n1xshq017fir80giai5q2s8h80n"; }; meta.homepage = "https://github.com/sindrets/diffview.nvim/"; }; @@ -2901,11 +2901,11 @@ final: prev: dracula-nvim = buildVimPluginFrom2Nix { pname = "dracula.nvim"; - version = "2023-04-20"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "Mofiqul"; repo = "dracula.nvim"; - rev = "26d04c8ced02f02207e7aec1d5730c3a9ebadeeb"; + rev = "52f6d1c48589479d519c1aaea93dba1dd550a7a4"; sha256 = "16z6rzay9sn011pl1ljjqs2f2k7igzzyqg9k6dyzzxjb3k1037rl"; }; meta.homepage = "https://github.com/Mofiqul/dracula.nvim/"; @@ -2913,12 +2913,12 @@ final: prev: dressing-nvim = buildVimPluginFrom2Nix { pname = "dressing.nvim"; - version = "2023-05-25"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "stevearc"; repo = "dressing.nvim"; - rev = "f19cbd56f7f8cad212c58a7285d09c5d9c273896"; - sha256 = "1vp2shlqqmwj11wv3hz8zdk84pdgf6y9pjw0gcr7ikfn0ag0a8dx"; + rev = "f16d7586fcdd8b2e3850d0abb7e46f944125cc25"; + sha256 = "16wx27blh6iinqnsvzcfmzf69zv8ll6rxlxmw32i1hg3n4dz4gsg"; }; meta.homepage = "https://github.com/stevearc/dressing.nvim/"; }; @@ -2986,12 +2986,12 @@ final: prev: elixir-tools-nvim = buildVimPluginFrom2Nix { pname = "elixir-tools.nvim"; - version = "2023-05-25"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "elixir-tools"; repo = "elixir-tools.nvim"; - rev = "b13395f0e18ac1ffe3150819c11b63bf1cd0eb13"; - sha256 = "1609q259338z4y9ck91j08ynx7qs5nvsp1fn9ggg90w3b84pbm1m"; + rev = "c709578ca3b34d9c24da41ad385fe187a8212cce"; + sha256 = "049lhvimhjdb73y12ccfbh7sk2z2bwfi6nx45zyl01yyc1y0wqd2"; }; meta.homepage = "https://github.com/elixir-tools/elixir-tools.nvim/"; }; @@ -3179,12 +3179,12 @@ final: prev: firenvim = buildVimPluginFrom2Nix { pname = "firenvim"; - version = "2023-05-09"; + version = "2023-05-29"; src = fetchFromGitHub { owner = "glacambre"; repo = "firenvim"; - rev = "386239e1b1e6e3884db4da8bb7057709bec3dc51"; - sha256 = "0srvka4bl6nwh66p04zdlb8qr35j1i0gcxakaavjamrs3qqk6b1k"; + rev = "e2d5a0f97d1f41e03c8d2a3c71ee60b1a4a6bb83"; + sha256 = "0rsrjqml5dsczkn560a3lcicq9k9szc45j2zmdnz07j25zamp5w7"; }; meta.homepage = "https://github.com/glacambre/firenvim/"; }; @@ -3244,8 +3244,8 @@ final: prev: src = fetchFromGitHub { owner = "liangxianzhe"; repo = "floating-input.nvim"; - rev = "940a0135a074cec87f5f9bb00410817dff9a9e40"; - sha256 = "0klpx5cpf8w1qmbf7lzyjq1qwpyywdi2xvvghjk1bhyz8ww4kc56"; + rev = "6868f3371bc10e1984d6d8b7241a8f91184bd572"; + sha256 = "0zhra271njsyksjwrdsrghax1mshixc5awfzg5kasmk611ayk37j"; }; meta.homepage = "https://github.com/liangxianzhe/floating-input.nvim/"; }; @@ -3312,12 +3312,12 @@ final: prev: friendly-snippets = buildVimPluginFrom2Nix { pname = "friendly-snippets"; - version = "2023-05-28"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "rafamadriz"; repo = "friendly-snippets"; - rev = "8875cccf779160303bf2bed7d422717676f214fd"; - sha256 = "0cwcy6ikj0m56wbvq66yzzl50wmvfifrzmh0mggy5x7cwwlgfix9"; + rev = "9025d37189f26b6ca0b965a9e5eec3e69c37d2e9"; + sha256 = "0y3lbpqm2yby1i3mvybkkxn8sfiwbwxs685zpvpjq6l3b184h9jc"; }; meta.homepage = "https://github.com/rafamadriz/friendly-snippets/"; }; @@ -3420,24 +3420,24 @@ final: prev: fzf-lua = buildVimPluginFrom2Nix { pname = "fzf-lua"; - version = "2023-05-25"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "ibhagwan"; repo = "fzf-lua"; - rev = "bc5110738d44c16655cf1b23534343aaade855a2"; - sha256 = "10hf25dg1ipih576ypmq1lhp6kvm9qb37g9hb3kzh2f26x6r827d"; + rev = "8d6b6388f40a5c5ddadb32601238944f0b0fc233"; + sha256 = "1lcj8kq72is82dd49jrnk7gpily2jjjslxfl1rc3q9p9p8zvlknv"; }; meta.homepage = "https://github.com/ibhagwan/fzf-lua/"; }; fzf-vim = buildVimPluginFrom2Nix { pname = "fzf.vim"; - version = "2023-01-27"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "junegunn"; repo = "fzf.vim"; - rev = "dc71692255b62d1f67dc55c8e51ab1aa467b1d46"; - sha256 = "0h8yq3rxm6dfryjlh57n13bylwg4f4c4skc9z0krgl200v39ard0"; + rev = "5d87ac1fe8d729f116bda2f90a7211ad309ddf5a"; + sha256 = "1v7cp8bv7pdjz3cz90i5dj3xl31zk2jzsvwjrjdqs1fz601yhv3f"; }; meta.homepage = "https://github.com/junegunn/fzf.vim/"; }; @@ -3516,12 +3516,12 @@ final: prev: git-blame-nvim = buildVimPluginFrom2Nix { pname = "git-blame.nvim"; - version = "2023-05-20"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "f-person"; repo = "git-blame.nvim"; - rev = "b8a23393827a0478dbf606f5397c328895bd4f0e"; - sha256 = "11kh480lx51zymv6i0gyxwrm1h8qdmwfrbq0lz1jkzks3y475amb"; + rev = "a1a41cf25e985b7bf0b2e6b41b3cd4d1012a63c6"; + sha256 = "08qy16j4psxa7x14wi9wnb1wsxqjp74z9kn0c2y18alnpk0pa9kv"; }; meta.homepage = "https://github.com/f-person/git-blame.nvim/"; }; @@ -3600,12 +3600,12 @@ final: prev: glance-nvim = buildVimPluginFrom2Nix { pname = "glance.nvim"; - version = "2023-04-13"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "DNLHC"; repo = "glance.nvim"; - rev = "77ebd260c360ce11ddc6aa08efdcea993f40614a"; - sha256 = "0gkpngmdd568j8bbajpcwb30hqba90d9583pg9farfyl8l3j5vqa"; + rev = "6da4999e261829daebbee0c91efb5cb562408755"; + sha256 = "1s61sc5pz3jhrh5dsq9a8s0ba9mvlpq7i3pkyyicr8ssnjwry1v7"; }; meta.homepage = "https://github.com/DNLHC/glance.nvim/"; }; @@ -3636,24 +3636,24 @@ final: prev: go-nvim = buildVimPluginFrom2Nix { pname = "go.nvim"; - version = "2023-05-23"; + version = "2023-05-31"; src = fetchFromGitHub { owner = "ray-x"; repo = "go.nvim"; - rev = "711b3b84cf59d3c43a9d1b02fdf12152b397e7b1"; - sha256 = "1p6k6rgmakg4cfb3675ajw8jbrhl5xnpkzg74cp4j8qd6c4qnxfy"; + rev = "8a0498ee48a26f928b1dc1c02fb3d84d648a1c63"; + sha256 = "08iig6g3mmpkany1vnkpv0icm4i55542gsyq77dygigwriqlzkkq"; }; meta.homepage = "https://github.com/ray-x/go.nvim/"; }; godbolt-nvim = buildVimPluginFrom2Nix { pname = "godbolt.nvim"; - version = "2023-03-24"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "p00f"; repo = "godbolt.nvim"; - rev = "7e526ff6d04107161a732a6cba674d69bdc7e198"; - sha256 = "03l60x3mz3apma2hp7ls2vila19lfgdds9h3c4q35j4rb839mnfg"; + rev = "4a7e88041c9350ca7252585c7720eac0933af384"; + sha256 = "0nj5v1nqqgriz5420sqlrqqjrgki6xqgkj8s0ak70qnpx2rc0l2r"; }; meta.homepage = "https://github.com/p00f/godbolt.nvim/"; }; @@ -3827,24 +3827,24 @@ final: prev: harpoon = buildVimPluginFrom2Nix { pname = "harpoon"; - version = "2023-05-17"; + version = "2023-05-28"; src = fetchFromGitHub { owner = "ThePrimeagen"; repo = "harpoon"; - rev = "8cb54c4003045fe1b690de96638d334de9449546"; - sha256 = "0n1g3dbv5a090hqh0sadqla69dg8c5gh6q6zkjngg781jiw691gx"; + rev = "21f4c47c6803d64ddb934a5b314dcb1b8e7365dc"; + sha256 = "03i86ss4n3fayqwsv8d9dxgrs5lq5sc5fgbc2fg1b963r3y6rk68"; }; meta.homepage = "https://github.com/ThePrimeagen/harpoon/"; }; haskell-tools-nvim = buildNeovimPluginFrom2Nix { pname = "haskell-tools.nvim"; - version = "2023-05-27"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "MrcJkb"; repo = "haskell-tools.nvim"; - rev = "0a427b93f8932794537c2474e826f89021dd1c6b"; - sha256 = "1wap20ydnk5wk3787bwj0jdc485mk9iz32kvr85cy91k3qwrxwmd"; + rev = "33bac7b297df2b16df82f1465decfa13069b1ce1"; + sha256 = "1r82ykba0nzyja8kgrk770895ihbggn6c839c3sbgn0vc8drc0np"; }; meta.homepage = "https://github.com/MrcJkb/haskell-tools.nvim/"; }; @@ -4066,12 +4066,12 @@ final: prev: inc-rename-nvim = buildVimPluginFrom2Nix { pname = "inc-rename.nvim"; - version = "2023-04-05"; + version = "2023-06-03"; src = fetchFromGitHub { owner = "smjonas"; repo = "inc-rename.nvim"; - rev = "fb1b7468f27d874feb209eac46be5205e20b7fd3"; - sha256 = "1lhrzhhkml5dr67w4ypvkghxfkqyvb7drjpkwzr6f1wy6jaa6gfq"; + rev = "ed0f6f2b917cac4eb3259f907da0a481b27a3b7e"; + sha256 = "088l7xkr7sqmfdm786vavg36z9lpapn79zbr2gxrqwisbysmamcb"; }; meta.homepage = "https://github.com/smjonas/inc-rename.nvim/"; }; @@ -4114,24 +4114,24 @@ final: prev: indent-blankline-nvim = buildVimPluginFrom2Nix { pname = "indent-blankline.nvim"; - version = "2023-05-26"; + version = "2023-05-30"; src = fetchFromGitHub { owner = "lukas-reineke"; repo = "indent-blankline.nvim"; - rev = "ceaf730b13e332cd76600d9795722413c236c684"; - sha256 = "0q7hnpz0kdf29d9k0mx86snpwv646my5aicggj3v7caw7s1wydvq"; + rev = "7075d7861f7a6bbf0de0298c83f8a13195e6ec01"; + sha256 = "0hcjr1a4vasjvgs8w7hpg0rdfr2aji6n376g062xjynh0302826q"; }; meta.homepage = "https://github.com/lukas-reineke/indent-blankline.nvim/"; }; indent-o-matic = buildVimPluginFrom2Nix { pname = "indent-o-matic"; - version = "2023-02-13"; + version = "2023-06-03"; src = fetchFromGitHub { owner = "Darazaki"; repo = "indent-o-matic"; - rev = "f4138581fe4575b720eae2d123cbaed0d86c94cf"; - sha256 = "1n4vdpfhy8lga2d508ixi7mwa12rd8zk37ms43d4vrjff0v35nd5"; + rev = "4d11e98f523d3c4500b1dc33f0d1a248a4f69719"; + sha256 = "1s2hxq3jlx6mdvq5d6zdzrp6p8fc1vvkg2px95d0qw2ryqw4rixi"; }; meta.homepage = "https://github.com/Darazaki/indent-o-matic/"; }; @@ -4427,36 +4427,36 @@ final: prev: lazy-lsp-nvim = buildVimPluginFrom2Nix { pname = "lazy-lsp.nvim"; - version = "2023-05-01"; + version = "2023-05-29"; src = fetchFromGitHub { owner = "dundalek"; repo = "lazy-lsp.nvim"; - rev = "9144fa3dafb45fb68e529a3dae14853a57b76d73"; - sha256 = "0s823mdh657paz6p8ffvrir3gzlqy3kr79bxbc572mb0xw542a3y"; + rev = "cc9640662efcb99d869eaaec06c14f74d5135e04"; + sha256 = "0f52bficds6zmk4bl1bq3210zrqjb576fl8a41fb31psj2mas07n"; }; meta.homepage = "https://github.com/dundalek/lazy-lsp.nvim/"; }; lazy-nvim = buildVimPluginFrom2Nix { pname = "lazy.nvim"; - version = "2023-05-27"; + version = "2023-06-03"; src = fetchFromGitHub { owner = "folke"; repo = "lazy.nvim"; - rev = "a93d8983c4335b6ae7d6e7d516a191d929186d5b"; - sha256 = "0r3zmvq6cfaghwr2sdg4rh5sc57f8mmpbjvrvn1jsrf89sjvifli"; + rev = "f145e6f42a56306c5536e9efbfe41f7efbec285d"; + sha256 = "0dllxvrnyfxij710lkwq99m4vfwsabnh47dx4nrl5x0gbplaw6m9"; }; meta.homepage = "https://github.com/folke/lazy.nvim/"; }; lazygit-nvim = buildVimPluginFrom2Nix { pname = "lazygit.nvim"; - version = "2023-05-20"; + version = "2023-06-03"; src = fetchFromGitHub { owner = "kdheepak"; repo = "lazygit.nvim"; - rev = "883c25d13eafd8b89b3cc116c712b19c9d2a755e"; - sha256 = "0cdkr8ndyycg3yk4dqgff0faw856jwlnc9qyqd2l2x4nxjv7vrar"; + rev = "3466e48439601445e26c65635421625886f2d0c0"; + sha256 = "1w8qrgkvg7hivxlcr17l787gkyc0whi6iwgfl4chbcrll9ddj3r9"; }; meta.homepage = "https://github.com/kdheepak/lazygit.nvim/"; }; @@ -4499,24 +4499,24 @@ final: prev: leap-nvim = buildVimPluginFrom2Nix { pname = "leap.nvim"; - version = "2023-05-26"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "ggandor"; repo = "leap.nvim"; - rev = "be918a8e6aa00a6cfa7270d4bfcc11b2f80d6902"; - sha256 = "17iknjihcp6f6gw4qsylj7nh9y0zi1bsyxwbwrif7d6qmdvvz585"; + rev = "14b5a65190fe69388a8f59c695ed3394a10d6af8"; + sha256 = "1p3bz2zs4s2kg1q1gyaf2pffp1fwd0hmh5cds8s8a1r3cab9mnap"; }; meta.homepage = "https://github.com/ggandor/leap.nvim/"; }; legendary-nvim = buildVimPluginFrom2Nix { pname = "legendary.nvim"; - version = "2023-05-10"; + version = "2023-06-01"; src = fetchFromGitHub { owner = "mrjones2014"; repo = "legendary.nvim"; - rev = "ba2bb47ca6b183c59047565967f649be52b3ddf6"; - sha256 = "1b1n2g6wpkw9x2ak88k3m9qpyl716jq83538dzdwc5w7pb6218yq"; + rev = "6a3b2411146432f83ef44c7980d7a2b20f7a39ce"; + sha256 = "0hl6ax2j9k0vfjxra6lvh01v1bid9y4yzdhj56h27iafhd321i14"; }; meta.homepage = "https://github.com/mrjones2014/legendary.nvim/"; }; @@ -4691,12 +4691,12 @@ final: prev: lir-nvim = buildVimPluginFrom2Nix { pname = "lir.nvim"; - version = "2023-02-21"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "tamago324"; repo = "lir.nvim"; - rev = "1aa871f20637eccc4e1e26b0fbcf9aafc9b6caf7"; - sha256 = "0vwlp8b4kj0201abq5rh470kf4lsk2pr1207qhjd2ay1wp69ywiq"; + rev = "959ac31dae906fb71181c2e75ace62ffb1fff8c8"; + sha256 = "1r4m1nifavshj1g17sxcxfw449jamfc4ffdpil44g9wr7rjwv0hj"; }; meta.homepage = "https://github.com/tamago324/lir.nvim/"; }; @@ -4763,12 +4763,12 @@ final: prev: live-command-nvim = buildVimPluginFrom2Nix { pname = "live-command.nvim"; - version = "2023-04-28"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "smjonas"; repo = "live-command.nvim"; - rev = "bc7e094e7ff52caf682c1430ff3a43ff55f6a58b"; - sha256 = "1gpy117pwd6n283rbp45428r4xakj4sd8fnhnig0jni6kls68wjs"; + rev = "d460067d47948725a6f25b20f31ea8bbfdfe4622"; + sha256 = "0l7g7yjx4hz35nnz04k7qpjkd9z1rrp2n047p2k7zifjihiqbf3v"; }; meta.homepage = "https://github.com/smjonas/live-command.nvim/"; }; @@ -4847,12 +4847,12 @@ final: prev: lsp-zero-nvim = buildVimPluginFrom2Nix { pname = "lsp-zero.nvim"; - version = "2023-05-11"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "VonHeikemen"; repo = "lsp-zero.nvim"; - rev = "6a6be78ffc1bd87cc20b4d4487f5de42ab9660c2"; - sha256 = "0vl76wg15iqqbxrk3gnarzzjfs75fl9v99w24vcprg82bzwadv12"; + rev = "4c8ebf2e5f2b5ae10cd4347020bb0bb2e7e02384"; + sha256 = "0q6gm4vk2r5csl2dyg8pj4m438d8m104slp12m0ycrl4bfxvnwj2"; }; meta.homepage = "https://github.com/VonHeikemen/lsp-zero.nvim/"; }; @@ -4882,24 +4882,24 @@ final: prev: lsp_signature-nvim = buildVimPluginFrom2Nix { pname = "lsp_signature.nvim"; - version = "2023-05-03"; + version = "2023-06-01"; src = fetchFromGitHub { owner = "ray-x"; repo = "lsp_signature.nvim"; - rev = "7a26ebaa7e36aa2aefa6c1994b2b866c96de32e6"; - sha256 = "0f7fjb947hcr946l93p0bh1n649qn6s4d4lzf0xzgj73dsq0j8z4"; + rev = "17ff7a405fea8376b015b8ea7910d2e59958bf68"; + sha256 = "1qgl3j9a0b3wf381q859xjw0pcfbfxxm0fsdhj7bgfdq11v2q60p"; }; meta.homepage = "https://github.com/ray-x/lsp_signature.nvim/"; }; lspcontainers-nvim = buildVimPluginFrom2Nix { pname = "lspcontainers.nvim"; - version = "2022-11-21"; + version = "2023-06-03"; src = fetchFromGitHub { owner = "lspcontainers"; repo = "lspcontainers.nvim"; - rev = "b01e19356d4a407d5d45d8f26388d59276e84929"; - sha256 = "10pb1w8z3aiyzxlix9hlaw5fr4s2p8hbmfp41slc22hykmyky8nd"; + rev = "593b6655edc3ff7caaa89cac1ba9b27695b7fa09"; + sha256 = "0pvpphwkklcydjlzp2577n8rc3l5q3q7q5lmnp2iz79aizq0qhx9"; }; meta.homepage = "https://github.com/lspcontainers/lspcontainers.nvim/"; }; @@ -4966,12 +4966,12 @@ final: prev: luasnip = buildVimPluginFrom2Nix { pname = "luasnip"; - version = "2023-05-26"; + version = "2023-05-31"; src = fetchFromGitHub { owner = "l3mon4d3"; repo = "luasnip"; - rev = "a83e4b1ba7edc6fecdad09e39753a7d5eee1d01c"; - sha256 = "1x6hg6gp0jvkkrspqf3q5db1rkh4wd4rkh3qngcphhckrkjb0f9a"; + rev = "51ebb4b6637290e1b8e0fb0d6f38b605d3c24940"; + sha256 = "1g08v69fcwzrwpbfzfym7pzvwlva8wx7cx3g7smiw9309aj72ysc"; fetchSubmodules = true; }; meta.homepage = "https://github.com/l3mon4d3/luasnip/"; @@ -5063,12 +5063,12 @@ final: prev: mason-lspconfig-nvim = buildVimPluginFrom2Nix { pname = "mason-lspconfig.nvim"; - version = "2023-05-25"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "williamboman"; repo = "mason-lspconfig.nvim"; - rev = "f0ce33f4794a2364eb08d09d09380e8b04ec5e6a"; - sha256 = "0rcw23y7sfv3anjdx6vcyz416r6cm62y8axya7rg47jyirgq1l7c"; + rev = "5230617372e656d4a2e1e236e03bf7e7b4b97273"; + sha256 = "1wfdb1cbqkyh24f3y7hswl2b41s7r2cz0s6ms5az5jfa2a56m1wl"; }; meta.homepage = "https://github.com/williamboman/mason-lspconfig.nvim/"; }; @@ -5087,12 +5087,12 @@ final: prev: mason-nvim = buildVimPluginFrom2Nix { pname = "mason.nvim"; - version = "2023-05-18"; + version = "2023-05-29"; src = fetchFromGitHub { owner = "williamboman"; repo = "mason.nvim"; - rev = "08b2fd308e0107eab9f0b59d570b69089fd0b522"; - sha256 = "1z0vr1wmyd26xw57szng8n6hrdn25jj5qn5qf22bynplc86b3jdv"; + rev = "7d7efc738e08fc5bee822857db45cb6103f0b0c1"; + sha256 = "1m8irg61mzw2pcgc9r6nf0v9ch5pgmwq0n1qx8lclwwzxfbwgzdl"; }; meta.homepage = "https://github.com/williamboman/mason.nvim/"; }; @@ -5111,12 +5111,12 @@ final: prev: material-nvim = buildVimPluginFrom2Nix { pname = "material.nvim"; - version = "2023-04-25"; + version = "2023-05-29"; src = fetchFromGitHub { owner = "marko-cerovac"; repo = "material.nvim"; - rev = "0c725897bc3d22c45fbf25a602002ee02f06f619"; - sha256 = "1l950bqlpnidk2vpjsys6pgswsch9dza9vhjsi5pndnx3wgry81y"; + rev = "5180510258ca4645da3c22a2d968138131ff5de8"; + sha256 = "0v12bal6cjl4y3l60x8jp1wbakki7ixfb2c73hzmxhkwjfralb9x"; }; meta.homepage = "https://github.com/marko-cerovac/material.nvim/"; }; @@ -5171,12 +5171,12 @@ final: prev: mini-nvim = buildVimPluginFrom2Nix { pname = "mini.nvim"; - version = "2023-05-27"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "echasnovski"; repo = "mini.nvim"; - rev = "09476036cbaa7676172f7dd37a26a51a92388aab"; - sha256 = "0dq2n6nfxspqhp02gnvpy7l29a3v23kqs0jds04by5llqsbxn2k9"; + rev = "b1a6d9692e2f67ee35f77792b61eb7d44651c535"; + sha256 = "03kihvjnpqx1bbywbbb1k056r0s914xd2vza90zd71nk22alkx1h"; }; meta.homepage = "https://github.com/echasnovski/mini.nvim/"; }; @@ -5193,18 +5193,6 @@ final: prev: meta.homepage = "https://github.com/wfxr/minimap.vim/"; }; - minsnip-nvim = buildVimPluginFrom2Nix { - pname = "minsnip.nvim"; - version = "2022-01-04"; - src = fetchFromGitHub { - owner = "jose-elias-alvarez"; - repo = "minsnip.nvim"; - rev = "6ae2f3247b3a2acde540ccef2e843fdfcdfebcee"; - sha256 = "1db5az5civ2bnqg7v3g937mn150ys52258c3glpvdvyyasxb4iih"; - }; - meta.homepage = "https://github.com/jose-elias-alvarez/minsnip.nvim/"; - }; - mkdir-nvim = buildVimPluginFrom2Nix { pname = "mkdir.nvim"; version = "2022-07-23"; @@ -5243,12 +5231,12 @@ final: prev: monokai-pro-nvim = buildVimPluginFrom2Nix { pname = "monokai-pro.nvim"; - version = "2023-05-27"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "loctvl842"; repo = "monokai-pro.nvim"; - rev = "1159576e6e3b709811a65039d4778b53f64a0245"; - sha256 = "1w9yfq5vqmazagcfy0sv5f7461bmp1p80i4n3v7m2rkg6lldvyk6"; + rev = "9f9d9d253983a9360e16bc1dd2b8d6cea5842006"; + sha256 = "1riylymbxk5150za0h0jq9w1rs3g67hswgbhfpig89p3m2v49ksv"; }; meta.homepage = "https://github.com/loctvl842/monokai-pro.nvim/"; }; @@ -5543,12 +5531,12 @@ final: prev: neoconf-nvim = buildVimPluginFrom2Nix { pname = "neoconf.nvim"; - version = "2023-05-27"; + version = "2023-06-03"; src = fetchFromGitHub { owner = "folke"; repo = "neoconf.nvim"; - rev = "279c27f418f35397fe5b913d9d61d529cc038493"; - sha256 = "0qlvz7n46s94xapapcsyp6r2h7rzyl1wi0b1acr6arhhgl2r3xay"; + rev = "17aaf0462f7cd6b2c70c9a32988126bec71a2504"; + sha256 = "0qd48zxh7lnszs137y24dyky6iflqfnnszfycq6bjwaadd6mcp89"; }; meta.homepage = "https://github.com/folke/neoconf.nvim/"; }; @@ -5567,12 +5555,12 @@ final: prev: neodev-nvim = buildVimPluginFrom2Nix { pname = "neodev.nvim"; - version = "2023-05-25"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "folke"; repo = "neodev.nvim"; - rev = "ffa5f73f243954afb96fc19a512a24d7b8b0bb63"; - sha256 = "0176984ffpsg9vchmb10b7kdl9g5d5qyvmwazmrqmdm393bshklw"; + rev = "91bebf70e2c50c1d298752b74a34ca9da3c04f85"; + sha256 = "1mz33za6a1vrvbx7bxw497bzpmhnwgiandmgg3xhr6zjym22kzvk"; }; meta.homepage = "https://github.com/folke/neodev.nvim/"; }; @@ -5591,24 +5579,24 @@ final: prev: neogen = buildVimPluginFrom2Nix { pname = "neogen"; - version = "2023-05-22"; + version = "2023-05-31"; src = fetchFromGitHub { owner = "danymat"; repo = "neogen"; - rev = "de603d2f83a8eea7d799cc3e7a61ae02eb192110"; - sha256 = "1zdq0zkcl9yn4xpn9rf4jdn1y24czhpw9b3rbbmf9b1gwp98hzkx"; + rev = "72238bfb7099ed346e3742e815f13c3fe35f51ab"; + sha256 = "1sfxcirkpsgwpbad2al41dwdcjwls5k2vzq1wf3k8sk23kdmq2q2"; }; meta.homepage = "https://github.com/danymat/neogen/"; }; neogit = buildVimPluginFrom2Nix { pname = "neogit"; - version = "2023-05-27"; + version = "2023-06-01"; src = fetchFromGitHub { owner = "TimUntersberger"; repo = "neogit"; - rev = "bcf4b6bb203d89af49ee22b64a06d5571bd3f39c"; - sha256 = "0gih81a85s0zvpzrjwsr05ncdy0dd5j4zyd4jx5bhnhs4y0p91sk"; + rev = "4cebc271b13cb7af6b5a3e8ad76a356660c0c00c"; + sha256 = "0m6bvxymqb32x4h77diq6d7rxy7vbp2sx12d1pa3i8vp8vqwcm9b"; }; meta.homepage = "https://github.com/TimUntersberger/neogit/"; }; @@ -5663,12 +5651,12 @@ final: prev: neorg = buildVimPluginFrom2Nix { pname = "neorg"; - version = "2023-05-27"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "nvim-neorg"; repo = "neorg"; - rev = "360f8d6e8a18718d745c90ad25555d0803e1b168"; - sha256 = "1d2a9z6drbqavy13ia600yrkrvpaw0h88m7lwys402x7r78nis12"; + rev = "45efa0e606cd403fead47dd7b199f6b5c9a0a68b"; + sha256 = "09754m3r6yz563sl1g100cxpzf8pz6cpikhqznn5xalv1d7c10si"; }; meta.homepage = "https://github.com/nvim-neorg/neorg/"; }; @@ -5723,24 +5711,24 @@ final: prev: neotest = buildVimPluginFrom2Nix { pname = "neotest"; - version = "2023-05-27"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "nvim-neotest"; repo = "neotest"; - rev = "80f9c963019dc72d46574ff0ccb9a428f232afc5"; - sha256 = "047pcx3fi6by690111xhs71mg6n1habgdk8kdal0il1aw53q5sqj"; + rev = "0207e4025e5558fdd0b3951f250689eede5c75b2"; + sha256 = "1wk57d19913jx87162fv0r3cxb8nky5ybicjm3mq0sckj2ycnzg9"; }; meta.homepage = "https://github.com/nvim-neotest/neotest/"; }; neotest-dart = buildVimPluginFrom2Nix { pname = "neotest-dart"; - version = "2023-04-28"; + version = "2023-05-29"; src = fetchFromGitHub { owner = "sidlatau"; repo = "neotest-dart"; - rev = "c7a0aa394deadf63fc0a40b0df94c6e4d4047d19"; - sha256 = "0axpiam24gljmnz2i41fg03a6x1i8fqgskmf9nskg5l6m1vf5p19"; + rev = "f404d558c0ef8a463bf2b9882b6116b6b2301030"; + sha256 = "1ybzva7qk9h58i5l114977lc6dd17w0zjy1dgfiz2rqckryhrmlv"; }; meta.homepage = "https://github.com/sidlatau/neotest-dart/"; }; @@ -5759,12 +5747,12 @@ final: prev: neotest-dotnet = buildVimPluginFrom2Nix { pname = "neotest-dotnet"; - version = "2023-04-18"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "Issafalcon"; repo = "neotest-dotnet"; - rev = "85ffa30ec8a1feb1126f3057361850edf7d94e3f"; - sha256 = "0f31rwn93qkigx47444lmkp9fmappzbm62rgnxjwjz3gkipm0vca"; + rev = "2f3a5244fbbff24885dc4b09cdea538417867ca4"; + sha256 = "1xrwipnhwhmjj7q78m8n0fq5rx10jq3mk1zldg7xlb34wl7aabzh"; }; meta.homepage = "https://github.com/Issafalcon/neotest-dotnet/"; }; @@ -5795,12 +5783,12 @@ final: prev: neotest-haskell = buildVimPluginFrom2Nix { pname = "neotest-haskell"; - version = "2023-05-27"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "MrcJkb"; repo = "neotest-haskell"; - rev = "257ea2f173c8c83ecf3e4a964a82ff869f4ce9f0"; - sha256 = "108xzxd16i6mdyp2d1laqrszb2n672xagyz7bn53n2r2a7cjabh1"; + rev = "f2967821af53c5f2da70fa93a9299b5ab1d1981b"; + sha256 = "06rfnz59c7774lqcg1xsywpliw508ijg14j3d6rj1qjlc0knpyhx"; }; meta.homepage = "https://github.com/MrcJkb/neotest-haskell/"; }; @@ -5831,12 +5819,12 @@ final: prev: neotest-phpunit = buildVimPluginFrom2Nix { pname = "neotest-phpunit"; - version = "2023-05-26"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "olimorris"; repo = "neotest-phpunit"; - rev = "cb4808cb3ad96ffa6f515a04857b9e068348a6df"; - sha256 = "0amydz9l1kirnbvi8c2dkkw7ngf1v9dyafi2cl64khmsm8djz3jc"; + rev = "4e23b92d85a09b9731458ff7058ece4113c5d736"; + sha256 = "0a53p993vkqgfjssydkq9n6mhhz7rdh8cbljxzx74rw4jam7acyz"; }; meta.homepage = "https://github.com/olimorris/neotest-phpunit/"; }; @@ -5867,12 +5855,12 @@ final: prev: neotest-rspec = buildVimPluginFrom2Nix { pname = "neotest-rspec"; - version = "2023-05-26"; + version = "2023-05-31"; src = fetchFromGitHub { owner = "olimorris"; repo = "neotest-rspec"; - rev = "e48cfeeeafce4610c6ce253560b75d6f91656f57"; - sha256 = "0rfifxydkbxqgsqvg8lvklap98csj4ygr324cw2na1di2z48m10v"; + rev = "5fe7d860def0539f7f5d375fbf9c481c097062c8"; + sha256 = "1za4ikrkd7qy2wiik6i9bxk4f1l1wffdh02sj79fh4kr294r106c"; }; meta.homepage = "https://github.com/olimorris/neotest-rspec/"; }; @@ -5975,12 +5963,12 @@ final: prev: nerdcommenter = buildVimPluginFrom2Nix { pname = "nerdcommenter"; - version = "2023-05-17"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "preservim"; repo = "nerdcommenter"; - rev = "20452116894a6a79f01a1e95d98f02cf085e9bd6"; - sha256 = "0myc7s0q4a5y113y8sn4lhg706v5dv4815p64qk6ssy7j16866i7"; + rev = "b0b09ea46c9f0509556257bd8b838b40f493d6a0"; + sha256 = "1sz3iip6vk0g8x7bjar69ybr2zspf0x073sldvf7cypz2v05jk82"; }; meta.homepage = "https://github.com/preservim/nerdcommenter/"; }; @@ -6095,12 +6083,12 @@ final: prev: nlsp-settings-nvim = buildVimPluginFrom2Nix { pname = "nlsp-settings.nvim"; - version = "2023-05-26"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "tamago324"; repo = "nlsp-settings.nvim"; - rev = "b896c665381eb63b2a5429eb8c9a7eb51a03ceb8"; - sha256 = "0lvg0ccl6ai4ss9xfpmgrbapk1j5alsnryd68k6xb59yibf3mfsz"; + rev = "f6e8784d53908060b507a777c57449b472fbae97"; + sha256 = "0p8l1gwphc8d6z5yyb95i3p800sbdh9p3ha2kinfxmk978jf0a2y"; }; meta.homepage = "https://github.com/tamago324/nlsp-settings.nvim/"; }; @@ -6143,12 +6131,12 @@ final: prev: noice-nvim = buildVimPluginFrom2Nix { pname = "noice.nvim"; - version = "2023-05-27"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "folke"; repo = "noice.nvim"; - rev = "ee24b36743b18e53bdc6b49bbfa426fc18ea337a"; - sha256 = "000p1x73b2q3cazxj43nzc3q1v2ra9mm70rssyn9aacx5ai6c2ly"; + rev = "7b14678f83ad1a875b1bcea34de4377ebfb50973"; + sha256 = "05y8lz4r4rmjbnma7zv3fz0lknlgby6385sai92zkh5a959bj51x"; }; meta.homepage = "https://github.com/folke/noice.nvim/"; }; @@ -6191,24 +6179,24 @@ final: prev: nui-nvim = buildVimPluginFrom2Nix { pname = "nui.nvim"; - version = "2023-05-27"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "MunifTanjim"; repo = "nui.nvim"; - rev = "2b2732528e4a79eb8542568bd51d25f710395bd6"; - sha256 = "0bsgyfzjvsmx8mxwq2100cdmxq7vnqm9l45h7vy58iz3q1dch1nz"; + rev = "d5a82aae64426a805e19d8ef5a379292f9dc55d3"; + sha256 = "14mnskwvzsva5pxh909xgrzg1cy7r4459f0g85dkqr8z4c9yajic"; }; meta.homepage = "https://github.com/MunifTanjim/nui.nvim/"; }; null-ls-nvim = buildVimPluginFrom2Nix { pname = "null-ls.nvim"; - version = "2023-05-17"; + version = "2023-05-30"; src = fetchFromGitHub { owner = "jose-elias-alvarez"; repo = "null-ls.nvim"; - rev = "77e53bc3bac34cc273be8ed9eb9ab78bcf67fa48"; - sha256 = "1h3nnci4y33ih4isss5sdd1c2fkjvmn58l01fpnmcqmr9rhqhwaq"; + rev = "c89333e034a8daba654ebfcf9a4ec9f87765f01e"; + sha256 = "1kpyh1y5p0cazbvcm9cazkc93giqbbngm9zk1pf5qxrl18217cqh"; }; meta.homepage = "https://github.com/jose-elias-alvarez/null-ls.nvim/"; }; @@ -6227,12 +6215,12 @@ final: prev: nvchad = buildVimPluginFrom2Nix { pname = "nvchad"; - version = "2023-05-23"; + version = "2023-06-01"; src = fetchFromGitHub { owner = "nvchad"; repo = "nvchad"; - rev = "582dff9458ee8ac70149583829b6f8faecdc3aef"; - sha256 = "1vy4mx7sajbklbharis68b1vkkifc12qj9ns8k8i3xw4hvqzhp73"; + rev = "f8a489ea1a670569eead0fe5651c0c48add743e8"; + sha256 = "0xq9rmhgqy3jbzdyw5x8lnynhs22dw8vsy0nzkinbhc58b0jlr2l"; }; meta.homepage = "https://github.com/nvchad/nvchad/"; }; @@ -6347,12 +6335,12 @@ final: prev: nvim-cmp = buildNeovimPluginFrom2Nix { pname = "nvim-cmp"; - version = "2023-05-27"; + version = "2023-05-30"; src = fetchFromGitHub { owner = "hrsh7th"; repo = "nvim-cmp"; - rev = "1088b3743b83ffd8973ad65e6b5fed010da0ffd2"; - sha256 = "1jm74hqc2rw9p5fmgi1zfcmink42s6kqfcl812mi4wpbmq0yfb6n"; + rev = "fc0f694af1a742ada77e5b1c91ff405c746f4a26"; + sha256 = "1vmsa4vrx7nsrq2kzh8pyjfssfhb9b7xy7qqcyja4g0xp9z9z077"; }; meta.homepage = "https://github.com/hrsh7th/nvim-cmp/"; }; @@ -6371,12 +6359,12 @@ final: prev: nvim-cokeline = buildVimPluginFrom2Nix { pname = "nvim-cokeline"; - version = "2023-03-28"; + version = "2023-06-03"; src = fetchFromGitHub { owner = "willothy"; repo = "nvim-cokeline"; - rev = "28b9ed6ef2afe8632557953be920543403965546"; - sha256 = "1vcbj8wvil4sfnkmgi8h4mq6zb9034431673xn1jp72n9nvjc8kn"; + rev = "dce9f06d939b85abb5222939874343e3100a4c0d"; + sha256 = "1vbv63klkzcl2szz146f8251xc60px0yfsh3i79cbaknrskmmj8d"; }; meta.homepage = "https://github.com/willothy/nvim-cokeline/"; }; @@ -6455,12 +6443,12 @@ final: prev: nvim-dap = buildVimPluginFrom2Nix { pname = "nvim-dap"; - version = "2023-05-17"; + version = "2023-06-01"; src = fetchFromGitHub { owner = "mfussenegger"; repo = "nvim-dap"; - rev = "56118cee6af15cb9ddba9d080880949d8eeb0c9f"; - sha256 = "12byna7q3c72gij51lnyvgmibmxbw0xdswk6zny6p58b9hk4b3w9"; + rev = "7c1d47cf7188fc31acdf951f9eee22da9d479152"; + sha256 = "0mgv11jkyq5zkr6a0bk7wbfb5z7r5q070yh7s8nqijnc0i1n55f1"; }; meta.homepage = "https://github.com/mfussenegger/nvim-dap/"; }; @@ -6491,12 +6479,12 @@ final: prev: nvim-dap-ui = buildVimPluginFrom2Nix { pname = "nvim-dap-ui"; - version = "2023-05-27"; + version = "2023-05-29"; src = fetchFromGitHub { owner = "rcarriga"; repo = "nvim-dap-ui"; - rev = "c693e80f8d7b6369f4152e7fdab10db4847c5c71"; - sha256 = "05vm17b78iiw8g3g59kjjhbvhvp8yavn1n1mdlydazhywkn0wk0j"; + rev = "c020f660b02772f9f3d11f599fefad3268628a9e"; + sha256 = "0w64jq8g57g6wacrz1yx9mfjmmd82qfcpia818lfa4594z1amfg3"; }; meta.homepage = "https://github.com/rcarriga/nvim-dap-ui/"; }; @@ -6551,12 +6539,12 @@ final: prev: nvim-gdb = buildVimPluginFrom2Nix { pname = "nvim-gdb"; - version = "2023-05-23"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "sakhnik"; repo = "nvim-gdb"; - rev = "33de6ce3f12cec921e6c8fd715fcafce6641e037"; - sha256 = "131545107srlrxs2h62bsdrpw9iv8iyq19y98lfg1b33cf92n0c7"; + rev = "5cc067e0a251bf3912540ca14024294164f27d54"; + sha256 = "0982sddvsbvhsgjmpgn63ykg8bsndbjb945kyljnhjvwzn2vn24v"; }; meta.homepage = "https://github.com/sakhnik/nvim-gdb/"; }; @@ -6587,12 +6575,12 @@ final: prev: nvim-highlite = buildVimPluginFrom2Nix { pname = "nvim-highlite"; - version = "2023-05-28"; + version = "2023-06-01"; src = fetchFromGitHub { owner = "Iron-E"; repo = "nvim-highlite"; - rev = "c23e0d43dab42ed89bf88eaccfffcebff4370450"; - sha256 = "06ahisfnd14yyck44dv1wni8j5zindg85gvdw1y8p6xw73xrcal6"; + rev = "2646e30f686b321638f82510162e4dc8104a57ff"; + sha256 = "1nrjwfh2iv1nqg2miqdl7f277kwcgzc9n08dliiga8r01fsz1h4a"; }; meta.homepage = "https://github.com/Iron-E/nvim-highlite/"; }; @@ -6623,12 +6611,12 @@ final: prev: nvim-jdtls = buildVimPluginFrom2Nix { pname = "nvim-jdtls"; - version = "2023-05-23"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "mfussenegger"; repo = "nvim-jdtls"; - rev = "365811ecf97a08d0e2055fba210d65017344fd15"; - sha256 = "06axkic8h0a3k0i2x9s989hkyxalndgqih0bmpviqyd73xwncg8m"; + rev = "8597d57fb40d4ad503cf3acb2fdcfe1b0d8a193d"; + sha256 = "1s7xnl8rsav4237mzh37q4qflhbfb2sq7vasdfgzx4mgad2x6kx5"; }; meta.homepage = "https://github.com/mfussenegger/nvim-jdtls/"; }; @@ -6647,12 +6635,12 @@ final: prev: nvim-lastplace = buildVimPluginFrom2Nix { pname = "nvim-lastplace"; - version = "2023-05-26"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "ethanholz"; repo = "nvim-lastplace"; - rev = "86ad0c5c36fdd50ef0781c76bb14185b117bfc22"; - sha256 = "1lf0nn3ffj50q3f1d1w2qirzw5ibqzqik6nkf3zcb0js8m3rdspv"; + rev = "aeb0e0bd399288092729da89a9e51dda4ccbc9ec"; + sha256 = "16b14l4k9lwlhbjzqqj0dn4726jdfwa5iz0sd2a1akvwq5r83rm5"; }; meta.homepage = "https://github.com/ethanholz/nvim-lastplace/"; }; @@ -6683,12 +6671,12 @@ final: prev: nvim-lint = buildVimPluginFrom2Nix { pname = "nvim-lint"; - version = "2023-05-27"; + version = "2023-05-29"; src = fetchFromGitHub { owner = "mfussenegger"; repo = "nvim-lint"; - rev = "00b9feee38586d4521c17a0a6a0e2c94ea75d44a"; - sha256 = "1cp43n0vnfm15hrgci7ghfnjw67m5k6ll7qcm72vgjiswpi9pp38"; + rev = "58a4fee3d61a6fb3166163c55fe0b2eb29464f9c"; + sha256 = "1rh5hhgr3lzq144a7bm2wn25fcdd29y1sanw2y5i82ks159ivdk5"; }; meta.homepage = "https://github.com/mfussenegger/nvim-lint/"; }; @@ -6707,12 +6695,12 @@ final: prev: nvim-lspconfig = buildVimPluginFrom2Nix { pname = "nvim-lspconfig"; - version = "2023-05-27"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "neovim"; repo = "nvim-lspconfig"; - rev = "465042c0f786992212284311ebb5da1f89479774"; - sha256 = "0qw6rxr8rrfbaivrwg05n94xcvbf9kdmizyf8b7bgv16qk2c002w"; + rev = "664de12a7816dfa348bb475607edfa4fe0122025"; + sha256 = "0f2068l6kcrxxvk9wk8gxswqj0f3f6w6dm1nzmbcvqv4j5mvwnps"; }; meta.homepage = "https://github.com/neovim/nvim-lspconfig/"; }; @@ -6767,12 +6755,12 @@ final: prev: nvim-metals = buildVimPluginFrom2Nix { pname = "nvim-metals"; - version = "2023-05-21"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "scalameta"; repo = "nvim-metals"; - rev = "51cd9fabe8ba7ff9abafd0c1ec4292f3a2eb1a31"; - sha256 = "001zjqgiqf61c7x3r1np8za7naxph4qizilngckxahxa8myams44"; + rev = "1b9053139342ed9ab47b29e5a1076fcbd971a565"; + sha256 = "1fqc4bl5c9r1sgigfc1kmnzgnmgjpcb0sw32a2g2syz0fg9n7h6k"; }; meta.homepage = "https://github.com/scalameta/nvim-metals/"; }; @@ -6789,6 +6777,18 @@ final: prev: meta.homepage = "https://github.com/gpanders/nvim-moonwalk/"; }; + nvim-navbuddy = buildVimPluginFrom2Nix { + pname = "nvim-navbuddy"; + version = "2023-05-28"; + src = fetchFromGitHub { + owner = "SmiteshP"; + repo = "nvim-navbuddy"; + rev = "0db1d62761131ca4d0665423b3f7903532763a77"; + sha256 = "03dn2cl5q7ijhhh8qjbb7nijy04bijpwp8h243ysmzz2wwkgck8w"; + }; + meta.homepage = "https://github.com/SmiteshP/nvim-navbuddy/"; + }; + nvim-navic = buildVimPluginFrom2Nix { pname = "nvim-navic"; version = "2023-05-09"; @@ -6827,12 +6827,12 @@ final: prev: nvim-notify = buildVimPluginFrom2Nix { pname = "nvim-notify"; - version = "2023-05-13"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "rcarriga"; repo = "nvim-notify"; - rev = "f3024b912073774111202f5fa6518b0cd2a74432"; - sha256 = "05hwq6yvjblngvh9r5rkdxx320a9iqb79gjqzdzxsnlb2pzp5jsq"; + rev = "ea9c8ce7a37f2238f934e087c255758659948e0f"; + sha256 = "0lh49bln2s840x08f5a967569k597cnnrl5vclys7lrbw77avga6"; }; meta.homepage = "https://github.com/rcarriga/nvim-notify/"; }; @@ -6899,12 +6899,12 @@ final: prev: nvim-scrollview = buildVimPluginFrom2Nix { pname = "nvim-scrollview"; - version = "2023-05-05"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "dstein64"; repo = "nvim-scrollview"; - rev = "4a04039b80c270f6bd2075935cd3c7943f6ad140"; - sha256 = "084daagckdx91n3f4z0af3ykkxpgcs3k0f1hw7ihzg66by45mqpg"; + rev = "b0aee8d8a8ec4bb4b1d8152b8748ae6da37cd39c"; + sha256 = "1fphw6g9h2b3dk8xxjvmyxhcmw7b27y0jq0g3ybx9wnqac3w06m0"; }; meta.homepage = "https://github.com/dstein64/nvim-scrollview/"; }; @@ -6959,12 +6959,12 @@ final: prev: nvim-surround = buildVimPluginFrom2Nix { pname = "nvim-surround"; - version = "2023-05-22"; + version = "2023-05-30"; src = fetchFromGitHub { owner = "kylechui"; repo = "nvim-surround"; - rev = "26b5067c3b56815eafbf41b7b830f1ab52819a45"; - sha256 = "17r7klq852wq3kwhjlpc6a5k6d6h4bm8rf9ivjxgc7b4whiris5n"; + rev = "10b20ca7d9da1ac8df8339e140ffef94f9ab3b18"; + sha256 = "1jag0bdk8jmh6dnrl5051jm3q5lq25lp4yvs9zsq574479czjw5g"; }; meta.homepage = "https://github.com/kylechui/nvim-surround/"; }; @@ -6995,36 +6995,36 @@ final: prev: nvim-tree-lua = buildVimPluginFrom2Nix { pname = "nvim-tree.lua"; - version = "2023-05-27"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "nvim-tree"; repo = "nvim-tree.lua"; - rev = "e2a4c9d09d205ebe5f071264f43f73a0077c43a3"; - sha256 = "10cnc6vgkzrhbsp6hm3qxc89nnkx9hicwavcqm9s193g8ip654sd"; + rev = "f5d970d4506f385b29534252d8c15a782fa53034"; + sha256 = "0xxxw51imnz93f69kvsj41i7hv2c5gw9g9h6scd06rq2gd654fj9"; }; meta.homepage = "https://github.com/nvim-tree/nvim-tree.lua/"; }; nvim-treesitter = buildVimPluginFrom2Nix { pname = "nvim-treesitter"; - version = "2023-05-27"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "nvim-treesitter"; repo = "nvim-treesitter"; - rev = "a76db88548bb7fe008cd7e4f2d2ec2ccc080dede"; - sha256 = "0sipljsb1g2fikr8m91rn1jybdsgmz307icdh559p8xy3999c5ay"; + rev = "1b5a7334bb9862abafcf6676d2a2a6973d15ae3a"; + sha256 = "0rf603j2i7a1y1xli2yvv2ddl82qnr2sraii5mc442k1lmwbbk8d"; }; meta.homepage = "https://github.com/nvim-treesitter/nvim-treesitter/"; }; nvim-treesitter-context = buildVimPluginFrom2Nix { pname = "nvim-treesitter-context"; - version = "2023-05-24"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "nvim-treesitter"; repo = "nvim-treesitter-context"; - rev = "7cd5ac1c384b89e7e607238a936f13963f97ba32"; - sha256 = "1l1sd5a046v8phq5irlr348x6aq5svv633yjxwz5vzmhcp9wv0wi"; + rev = "e2ea37627c0681421ccf4a3cf19d68bb958e1817"; + sha256 = "01y9h86zvf4rj6zy0hlw59y9ynijj1ljpxhaz5kg689fyhq277cc"; }; meta.homepage = "https://github.com/nvim-treesitter/nvim-treesitter-context/"; }; @@ -7067,12 +7067,12 @@ final: prev: nvim-treesitter-textobjects = buildVimPluginFrom2Nix { pname = "nvim-treesitter-textobjects"; - version = "2023-05-23"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "nvim-treesitter"; repo = "nvim-treesitter-textobjects"; - rev = "95b76b95eff25e1e64f363938cd853852355d70a"; - sha256 = "0j1mrq2djx5f7xvxdjj441skkh4dmjz8frd06951pnxdar3ljqbn"; + rev = "23e883b99228f8d438254e5ef8c897e5e60e75d1"; + sha256 = "1xjwah0g96mjv01lhd7yfml2gd15syhj2axbvid9xk4yn4m6hks8"; }; meta.homepage = "https://github.com/nvim-treesitter/nvim-treesitter-textobjects/"; }; @@ -7115,11 +7115,11 @@ final: prev: nvim-ts-rainbow2 = buildVimPluginFrom2Nix { pname = "nvim-ts-rainbow2"; - version = "2023-05-28"; + version = "2023-06-04"; src = fetchgit { url = "https://gitlab.com/HiPhish/nvim-ts-rainbow2"; - rev = "a87025babc32e2031890c7a22d9e928ec3d2ec85"; - sha256 = "0hmg117c3szjs1dvrbd4gxmah850a679b8pwv42z9d4352s64zv6"; + rev = "e1783c843fd0a604d071cb9f0c6919ac93bcd96e"; + sha256 = "0jh0rjg8swya2647nm5csmmv0b706s2piiiw5ngw8avm77z2f2dc"; }; meta.homepage = "https://gitlab.com/HiPhish/nvim-ts-rainbow2"; }; @@ -7234,24 +7234,24 @@ final: prev: octo-nvim = buildVimPluginFrom2Nix { pname = "octo.nvim"; - version = "2023-05-23"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "pwntester"; repo = "octo.nvim"; - rev = "512876820db1279e6f91530c6ce11187eb141056"; - sha256 = "1lwfj89b30b44n13si0i1ljcdjlhp889cg2m7pa387cjjac559q3"; + rev = "2d2769ff80a82a0da24dcf636ae146f3ed5d7ae5"; + sha256 = "1dj2dzrd9p34k5f3m6l1qhxf74zmrq07rk94s18q2vzfhkqznbv8"; }; meta.homepage = "https://github.com/pwntester/octo.nvim/"; }; oil-nvim = buildVimPluginFrom2Nix { pname = "oil.nvim"; - version = "2023-05-25"; + version = "2023-06-03"; src = fetchFromGitHub { owner = "stevearc"; repo = "oil.nvim"; - rev = "64d2f305d30cec13938aa99f8f13bd84c502e020"; - sha256 = "1iav93pn4fl2lvpy8x2l43l8m8ghdisd7lidlc3s81zpykb41g4m"; + rev = "f322209a4a2b4685adeda5df00b29cdfd64db08e"; + sha256 = "16hrddrfp4mwikagwb51yvwcz2m1q9a4zxg8dg3f9r90fg0sd15x"; fetchSubmodules = true; }; meta.homepage = "https://github.com/stevearc/oil.nvim/"; @@ -7283,12 +7283,12 @@ final: prev: onedark-nvim = buildVimPluginFrom2Nix { pname = "onedark.nvim"; - version = "2023-05-05"; + version = "2023-06-03"; src = fetchFromGitHub { owner = "navarasu"; repo = "onedark.nvim"; - rev = "f6e82074761473d30a722f5d90c60282de1ac41d"; - sha256 = "060ghwpwpwmlwk5rpsww1cdd7fvsf105bq1lxirbk70xmk3y4b0b"; + rev = "8ef51924724d506e515f2d3ac9f959a9eaf38f3d"; + sha256 = "1716cigy6zni71ipa2yqpqkpqiig92hdzpf9fcrzfmcqwyjddm0s"; }; meta.homepage = "https://github.com/navarasu/onedark.nvim/"; }; @@ -7307,12 +7307,12 @@ final: prev: onedarkpro-nvim = buildVimPluginFrom2Nix { pname = "onedarkpro.nvim"; - version = "2023-05-26"; + version = "2023-05-28"; src = fetchFromGitHub { owner = "olimorris"; repo = "onedarkpro.nvim"; - rev = "ec07364f3cfa9cc6467bf067a490cfd74011efcd"; - sha256 = "0jmy9m52xw526pddqqqnvqq8jbk3jkyi0fwfd0bg2wk699jfy1zc"; + rev = "382c689c08803233da58f1141f713415772d9dc3"; + sha256 = "082rvkfhkpd9w9kjpixp0a624cy9f3vyyvq5j3pgdnz3b5ddbx1l"; }; meta.homepage = "https://github.com/olimorris/onedarkpro.nvim/"; }; @@ -7331,12 +7331,12 @@ final: prev: onenord-nvim = buildVimPluginFrom2Nix { pname = "onenord.nvim"; - version = "2023-05-13"; + version = "2023-06-01"; src = fetchFromGitHub { owner = "rmehri01"; repo = "onenord.nvim"; - rev = "7b2b23e6af16430be3d0364c7ced34522ce88124"; - sha256 = "02zv2kppvfi44acfag4489404mnspygpkrrnw3rqhk9rn1za2i5a"; + rev = "acd97c26d253884f8b58e68c89d8340c5e0f4456"; + sha256 = "113lv721w4xh46cf0czv0vy6vybrx33m1srqrr6czmh7axd514qs"; }; meta.homepage = "https://github.com/rmehri01/onenord.nvim/"; }; @@ -7379,36 +7379,36 @@ final: prev: orgmode = buildVimPluginFrom2Nix { pname = "orgmode"; - version = "2023-05-11"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "nvim-orgmode"; repo = "orgmode"; - rev = "f6926dfde7b09928533cdb247406f7f0cb341f93"; - sha256 = "1qadi16p5hzl35h3ljh93s1dxnc78hq948nx38cz1ilynhd7px3q"; + rev = "2737ef2be69b92fb58c6fb3861ca0bbb8f5d499e"; + sha256 = "0p50qhb8vhaffb3zq0slsyv5m3a3f2yjjx0n8f97hcwldhpvvm06"; }; meta.homepage = "https://github.com/nvim-orgmode/orgmode/"; }; other-nvim = buildVimPluginFrom2Nix { pname = "other.nvim"; - version = "2022-11-15"; + version = "2023-06-03"; src = fetchFromGitHub { owner = "rgroli"; repo = "other.nvim"; - rev = "9afecea37c9b5ffed65a21de9e585d548de7778a"; - sha256 = "06rqg69dx3fqfq1jdyqvan33czx2xvp4b4d52gi4p3lxjgqwpzvm"; + rev = "3cce281cac955cf3a097945432e2057f79183dff"; + sha256 = "1wwb2x4gri48lpbji0bxqw71njyxfhaz288rd5mmqys79c8znygb"; }; meta.homepage = "https://github.com/rgroli/other.nvim/"; }; oxocarbon-nvim = buildVimPluginFrom2Nix { pname = "oxocarbon.nvim"; - version = "2023-05-17"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "nyoom-engineering"; repo = "oxocarbon.nvim"; - rev = "ee9182cb01c833369fd492ecdfb12366ba75582d"; - sha256 = "1mlip0q38szvyrsb6p6fminbfk7fcmgjdlrmsafzr2pmspbcrz8v"; + rev = "00dd30d8a61af143d437b89768eb2050e8dc32af"; + sha256 = "0inysh2vhr5izslq19yys31wxijzxskl22y4hlvc1jiiv40s8rw4"; }; meta.homepage = "https://github.com/nyoom-engineering/oxocarbon.nvim/"; }; @@ -7511,12 +7511,12 @@ final: prev: pest-vim = buildVimPluginFrom2Nix { pname = "pest.vim"; - version = "2020-04-20"; + version = "2023-06-03"; src = fetchFromGitHub { owner = "pest-parser"; repo = "pest.vim"; - rev = "ebeeea5e0757adee037135cf3b8248589b22ae16"; - sha256 = "159h9f96x127w1i0cj0cwb8cr2k0fbb9l3vsyky60h344p8amcbi"; + rev = "1ad0325158785aabb0fcc9a5dee22aaf405175d6"; + sha256 = "1pkbwn4rw7c9lllch681pxls1p1aw9ljpxh1vx39wz55n8rmdz17"; }; meta.homepage = "https://github.com/pest-parser/pest.vim/"; }; @@ -7571,12 +7571,12 @@ final: prev: plenary-nvim = buildNeovimPluginFrom2Nix { pname = "plenary.nvim"; - version = "2023-05-24"; + version = "2023-05-31"; src = fetchFromGitHub { owner = "nvim-lua"; repo = "plenary.nvim"; - rev = "52544825d6b8be677eb395983515ad5e30ae1f2e"; - sha256 = "0l25gvxwzs1kq4v1jrngy52091kc9kb64ny825ns518c5k4g3kd3"; + rev = "499e0743cf5e8075cd32af68baa3946a1c76adf1"; + sha256 = "0r9aw3a53vzq0rdyvq7pi99pqbmnww0dm146pbj2kd33rb34daz6"; }; meta.homepage = "https://github.com/nvim-lua/plenary.nvim/"; }; @@ -7873,12 +7873,12 @@ final: prev: refactoring-nvim = buildVimPluginFrom2Nix { pname = "refactoring.nvim"; - version = "2023-05-27"; + version = "2023-05-31"; src = fetchFromGitHub { owner = "theprimeagen"; repo = "refactoring.nvim"; - rev = "6d0315d3a9bf979d564e9cd17004029d57720a46"; - sha256 = "08dhr394wzjr7sm9plvb28gjnk2z04adl0a1jy0wm6w0dm1k5drh"; + rev = "a85dfff2602b739627b9f8a831de8c3e7b2993ae"; + sha256 = "1x6i6bwsk4vvbbvgn25vxvbwqy83w1dfkn5fwpnn2lfw88yflchf"; }; meta.homepage = "https://github.com/theprimeagen/refactoring.nvim/"; }; @@ -7909,12 +7909,12 @@ final: prev: rest-nvim = buildNeovimPluginFrom2Nix { pname = "rest.nvim"; - version = "2023-05-11"; + version = "2023-05-31"; src = fetchFromGitHub { owner = "rest-nvim"; repo = "rest.nvim"; - rev = "d8dc204e9f6fd930d9d1d709f0d19138f804431a"; - sha256 = "11a2ac86d9jr7wn62ylnr47j44pz9igzmia55cka8f1530nm422s"; + rev = "c21eed6cbbc76e120a31b8eafa8f77c338bcbce7"; + sha256 = "1zyzl2fyaxwn7w037yy01xg4lnqb3x65bnjwd9krwpwdq6bm9gs1"; }; meta.homepage = "https://github.com/rest-nvim/rest.nvim/"; }; @@ -7933,12 +7933,12 @@ final: prev: rnvimr = buildVimPluginFrom2Nix { pname = "rnvimr"; - version = "2023-05-27"; + version = "2023-06-01"; src = fetchFromGitHub { owner = "kevinhwang91"; repo = "rnvimr"; - rev = "8021cc2ea47a4a3c1cee05a555b3368c8e1d67be"; - sha256 = "0vh3ankfh6g3zzhjbr9q6hgdqsxvll1gcni44dkhg41482sxh14x"; + rev = "50a36ff2e7cda1f727cb8607f8e791cebd4fa7b1"; + sha256 = "06cvmmpb8kn7iffnkhh1c6bzyh8kn4w29ab5gv0bx3hk8qylk55q"; }; meta.homepage = "https://github.com/kevinhwang91/rnvimr/"; }; @@ -8161,12 +8161,12 @@ final: prev: sg-nvim = buildVimPluginFrom2Nix { pname = "sg.nvim"; - version = "2023-03-29"; + version = "2023-05-30"; src = fetchFromGitHub { owner = "sourcegraph"; repo = "sg.nvim"; - rev = "2748c52e9bef39702941d3171670810e9d2dcace"; - sha256 = "15nxm9yni6g5l7a16z9yc590q159dw8y48jqnaszgbv9hp7w01sp"; + rev = "f79128f29ae501a54794fc99858e3e771f20a7ba"; + sha256 = "1xmj05i4bw2cx9d18mm85ynkn29dkngn5090r71wssvan6dm3fb4"; }; meta.homepage = "https://github.com/sourcegraph/sg.nvim/"; }; @@ -8692,12 +8692,12 @@ final: prev: tabline-nvim = buildVimPluginFrom2Nix { pname = "tabline.nvim"; - version = "2022-06-13"; + version = "2023-06-03"; src = fetchFromGitHub { owner = "kdheepak"; repo = "tabline.nvim"; - rev = "5d76dc8616b4b7b892229cc05cd0f4cd0200077a"; - sha256 = "0k9yk7drxbjfwjfqmg7iam2vaz05rk3shd5lap8qakwvayvas258"; + rev = "1f77f520249d508eebff462e103ed699ecf5dc5f"; + sha256 = "1c5hpjv7w6r65kadrxywqbp21k527pzrpmqchyxcjjplc1gzq9p4"; }; meta.homepage = "https://github.com/kdheepak/tabline.nvim/"; }; @@ -8982,12 +8982,12 @@ final: prev: telescope-manix = buildNeovimPluginFrom2Nix { pname = "telescope-manix"; - version = "2023-03-12"; + version = "2023-05-29"; src = fetchFromGitHub { owner = "MrcJkb"; repo = "telescope-manix"; - rev = "a7cfacda4dc8a56383b30d402ab9eedcffc24c49"; - sha256 = "071fdpxqv0l2zxjy71p0xi8p84jacqfpi9wzv0nm5w5dv8irr304"; + rev = "86f40f1d562e344851e2d9df853c8f058db33c38"; + sha256 = "0br5naafzrzrmr4qzdhl6j8557c4m4d6agqzphn9fcd8q6faphk8"; }; meta.homepage = "https://github.com/MrcJkb/telescope-manix/"; }; @@ -9054,12 +9054,12 @@ final: prev: telescope-undo-nvim = buildVimPluginFrom2Nix { pname = "telescope-undo.nvim"; - version = "2023-03-26"; + version = "2023-06-03"; src = fetchFromGitHub { owner = "debugloop"; repo = "telescope-undo.nvim"; - rev = "231b5ebb4328d2768c830c9a8d1b9c696116848d"; - sha256 = "1qvn1yamhv6gvbxgmin1yi3rqnmx1611gslrddhsfjkzc246pyzz"; + rev = "3dec002ea3e7952071d26fbb5d01e2038a58a554"; + sha256 = "1331qgsfxy1qsvxlkss2g713qlj2ri02ywbhiwwy5cyl8bc0rl76"; }; meta.homepage = "https://github.com/debugloop/telescope-undo.nvim/"; }; @@ -9163,12 +9163,12 @@ final: prev: term-edit-nvim = buildVimPluginFrom2Nix { pname = "term-edit.nvim"; - version = "2023-01-25"; + version = "2023-05-28"; src = fetchFromGitHub { owner = "chomosuke"; repo = "term-edit.nvim"; - rev = "9efbb3298ce63807750a415a091d7d535ff0a7e8"; - sha256 = "1qb16nnraxg1b9v2hwi8ywzzxgd6p8hxy673d5x561firnfj1zqi"; + rev = "3c2385d5d058720928a96e77c405466478fb711a"; + sha256 = "06qkld6i542p0hh2jxk80n5xfrf0jklg4b7vmkm6imvkcj705hdc"; }; meta.homepage = "https://github.com/chomosuke/term-edit.nvim/"; }; @@ -9271,12 +9271,12 @@ final: prev: tint-nvim = buildVimPluginFrom2Nix { pname = "tint.nvim"; - version = "2023-03-23"; + version = "2023-05-30"; src = fetchFromGitHub { owner = "levouh"; repo = "tint.nvim"; - rev = "51e9144fa3cd3f2492a282ccadc8bd3355653f5c"; - sha256 = "0fzxyph6qj0rcxysvap3awr5xv3hj56z5ma1gm5jp8b4fm72cgrh"; + rev = "80b15a91087991068d5834419437f652d1d4bc8e"; + sha256 = "14p909q7xlgapgjafpiwd71bf4f83xcrcikn6mlzlnhwrbmxmcns"; }; meta.homepage = "https://github.com/levouh/tint.nvim/"; }; @@ -9307,12 +9307,12 @@ final: prev: tmux-nvim = buildVimPluginFrom2Nix { pname = "tmux.nvim"; - version = "2023-05-05"; + version = "2023-05-29"; src = fetchFromGitHub { owner = "aserowy"; repo = "tmux.nvim"; - rev = "57220071739c723c3a318e9d529d3e5045f503b8"; - sha256 = "08liqkw987mh9i4flw9h7n74wrjkdksb1fy0wrdg9v1jk5f3p66f"; + rev = "03e28fdaa2ef54b975ba1930f1e69b5e231dedc9"; + sha256 = "0hr8f385mdr9dpf7fzyf4a2swm7pyrwl64pzihqphccsjwijiwj1"; }; meta.homepage = "https://github.com/aserowy/tmux.nvim/"; }; @@ -9368,24 +9368,24 @@ final: prev: toggleterm-nvim = buildVimPluginFrom2Nix { pname = "toggleterm.nvim"; - version = "2023-05-22"; + version = "2023-05-30"; src = fetchFromGitHub { owner = "akinsho"; repo = "toggleterm.nvim"; - rev = "a44313fb28ed9bc9837c2b99dec1c6eed3a4f47f"; - sha256 = "08hhwn9inh5llvdx9qb7ics8pz69q16218lfdrllbfam1km5sg4q"; + rev = "cf146a267a6a7db62b1e2aff40414b20081048a1"; + sha256 = "12windxwl9icn1g9yh36nw4brsmlb2cx16ay68p0dk16axvnhf22"; }; meta.homepage = "https://github.com/akinsho/toggleterm.nvim/"; }; tokyonight-nvim = buildVimPluginFrom2Nix { pname = "tokyonight.nvim"; - version = "2023-05-27"; + version = "2023-05-30"; src = fetchFromGitHub { owner = "folke"; repo = "tokyonight.nvim"; - rev = "cd5156f4b4a6c4c337a46deb0c0bd37319920833"; - sha256 = "1x0cv834fi084rs2ybzr0sr04n5bp5xd3d2ns88jcyvm2j5pw6zy"; + rev = "161114bd39b990995e08dbf941f6821afbdcd666"; + sha256 = "1wbgi4zwlsgw13bqbnvgn1f8bilfbgyjqlhw1jpcdrfz3xrymji0"; }; meta.homepage = "https://github.com/folke/tokyonight.nvim/"; }; @@ -9452,12 +9452,12 @@ final: prev: trouble-nvim = buildVimPluginFrom2Nix { pname = "trouble.nvim"; - version = "2023-05-26"; + version = "2023-06-03"; src = fetchFromGitHub { owner = "folke"; repo = "trouble.nvim"; - rev = "324c977cfeacb8498ca9ba1c74cc35bd18858a8d"; - sha256 = "1hk2j786jdvirlm4y5bjriv390hwvx6q1brh97cc889akibyc9jb"; + rev = "23c1327b85bd51258f9f8bd8f77f024acef6de69"; + sha256 = "1y4zxz84lksdva4cfp2pzp5kand8m29s1vws9ifkj83qrlsfx7p4"; }; meta.homepage = "https://github.com/folke/trouble.nvim/"; }; @@ -9584,12 +9584,12 @@ final: prev: unison = buildVimPluginFrom2Nix { pname = "unison"; - version = "2023-05-27"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "unisonweb"; repo = "unison"; - rev = "7c9e968fe28ab9fec614159ca907df8fe69b5c74"; - sha256 = "03yzmalnz1k7aj8r8s80mkr5x065mmnkgawx544mqqv9i7y0gz1q"; + rev = "9954a5f2f1c0caa62b40203eb7e5650c5c38b9ff"; + sha256 = "0glps9fli4jgpmxvs6r4y0p2qj35vhk56mvk0b0g8lqlmzrvh0sv"; }; meta.homepage = "https://github.com/unisonweb/unison/"; }; @@ -9680,12 +9680,12 @@ final: prev: vifm-vim = buildVimPluginFrom2Nix { pname = "vifm.vim"; - version = "2023-05-17"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "vifm"; repo = "vifm.vim"; - rev = "9241d3bbbc692b52cf61c0a464e66b4a9cf5418d"; - sha256 = "08fprf2cyi9jkbpvjbfcsxczzd3c8f5zkpivj1cwbyj2v9j6862w"; + rev = "0300c693975b378802ffdf305187e1cf3f636c5e"; + sha256 = "0p2nc9qnydslij69dcpl1xvydhzrvbpc4gfkbz3r74b8imh1z5dk"; }; meta.homepage = "https://github.com/vifm/vifm.vim/"; }; @@ -10484,24 +10484,24 @@ final: prev: vim-code-dark = buildVimPluginFrom2Nix { pname = "vim-code-dark"; - version = "2023-05-14"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "tomasiser"; repo = "vim-code-dark"; - rev = "5c2c2d65ff908f4763c6af1cf3f100ab9a426e9e"; - sha256 = "1jya6w6saxk65mbnbln7fwmj6d3r11x8x9gd3h5q41idz334bjnc"; + rev = "978be3a98e49e166b572c9618206061ed74603e4"; + sha256 = "0q7baxh2ckq0b0ycyyg7p0jq7b3wvlfgq8c69bd2dm5gdbijpq08"; }; meta.homepage = "https://github.com/tomasiser/vim-code-dark/"; }; vim-codefmt = buildVimPluginFrom2Nix { pname = "vim-codefmt"; - version = "2023-03-22"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "google"; repo = "vim-codefmt"; - rev = "db7631c9b9ea72ccc830e9fda0a8284c43f2beed"; - sha256 = "0jqbj2ggddhw9bgri1ngi2kcv15qispqngbd1vsfxcjn6c90arsz"; + rev = "6ee1e7e22a6ff793331da96c0884f0b906e7dc96"; + sha256 = "116r2hrbf87silgzp5py7chp8wcb64rhxcg5vhscq2gp7080yv7h"; }; meta.homepage = "https://github.com/google/vim-codefmt/"; }; @@ -10796,12 +10796,12 @@ final: prev: vim-dirvish = buildVimPluginFrom2Nix { pname = "vim-dirvish"; - version = "2022-12-08"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "justinmk"; repo = "vim-dirvish"; - rev = "6233243f0caa71d27d27ea102540a88bce8eb6ea"; - sha256 = "03nvv5y4zv2kh4fkg3xx0zf247mqv201zf89aalczvslvwdf7gqf"; + rev = "c9cf284637d8c777597646c6fad338bdc35ac54f"; + sha256 = "1vaypsynl1xpbi9nw4d5waibmk9cn2nrcirfba6pkp8vghbqqz4h"; }; meta.homepage = "https://github.com/justinmk/vim-dirvish/"; }; @@ -11084,12 +11084,12 @@ final: prev: vim-fetch = buildVimPluginFrom2Nix { pname = "vim-fetch"; - version = "2021-02-12"; + version = "2023-05-29"; src = fetchFromGitHub { owner = "wsdjeg"; repo = "vim-fetch"; - rev = "0a6ab17e84c7f4808bf05ec380121bce40b40d21"; - sha256 = "04srlz3zaiqkv9hz6q3vdkfq02k1wj4p9mg4m8930das4nkl7a05"; + rev = "bbb75c3172f766d1a62832df0ec7674c69a560ad"; + sha256 = "1mcn4a7n1318sgi3dd062sh1sy2b8sa4inwklcz2gh095lr9i323"; }; meta.homepage = "https://github.com/wsdjeg/vim-fetch/"; }; @@ -11180,12 +11180,12 @@ final: prev: vim-flutter = buildVimPluginFrom2Nix { pname = "vim-flutter"; - version = "2022-06-04"; + version = "2023-06-03"; src = fetchFromGitHub { owner = "thosakwe"; repo = "vim-flutter"; - rev = "32b9fa0126a4a4994c296c69ad038dc78aa83d68"; - sha256 = "1yv795yalidcz2y3x6h14764g70l8v4cdj9i4yf2pgs0rl0f4sqw"; + rev = "a1edd853ac9533d0014923aac1ae587e626cc4ab"; + sha256 = "1ygg7d489r9vgcn341s6v5px6xswjjhjbhkin6l9akpmh96fgrpy"; }; meta.homepage = "https://github.com/thosakwe/vim-flutter/"; }; @@ -11324,12 +11324,12 @@ final: prev: vim-gitgutter = buildVimPluginFrom2Nix { pname = "vim-gitgutter"; - version = "2023-04-27"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "airblade"; repo = "vim-gitgutter"; - rev = "2ee95686c5944f99b42dd04fec005b30497006de"; - sha256 = "1lg74l6rw6m1fy39c039vynpb97gq0j066k9gn9wll7zjxqjwfss"; + rev = "e2056e54c50c6f3fbf386108eeb013e2a7f14ae3"; + sha256 = "085qcxkazkprglvg3kwmfdbbw738rsyvs2l2aljxx68ppl0pgxin"; }; meta.homepage = "https://github.com/airblade/vim-gitgutter/"; }; @@ -11372,12 +11372,12 @@ final: prev: vim-go = buildVimPluginFrom2Nix { pname = "vim-go"; - version = "2023-05-18"; + version = "2023-05-31"; src = fetchFromGitHub { owner = "fatih"; repo = "vim-go"; - rev = "2a874910a242fd4a5da021ea32fb1cde3b69f79b"; - sha256 = "1n5xs00xd7wkivxb3jfxrspplbs67kqg0lx54p3mclaasjia07ai"; + rev = "3289077b08b210aa88a890cb65e9538bd52364b6"; + sha256 = "1v5v23nz3209syjwwpm8447367lrm87jc7z7frx3k40m8mbj3bmp"; }; meta.homepage = "https://github.com/fatih/vim-go/"; }; @@ -11420,12 +11420,12 @@ final: prev: vim-gruvbox8 = buildVimPluginFrom2Nix { pname = "vim-gruvbox8"; - version = "2022-03-20"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "lifepillar"; repo = "vim-gruvbox8"; - rev = "f94afba273ec544e1e73e82c78674eed4ccb1c8c"; - sha256 = "1gjnp05a10bad1f12xc5pb1m54jzkq3hh8a83l8aq6377a1z9bky"; + rev = "6bf129b4d65fad40ce4317f0ac34f9708afc7f0e"; + sha256 = "00i8xfbzjs8d0fpmsvrysc1p6hnk6z95d61q7nc1hkx14hlc5w0l"; }; meta.homepage = "https://github.com/lifepillar/vim-gruvbox8/"; }; @@ -11839,6 +11839,18 @@ final: prev: meta.homepage = "https://github.com/lepture/vim-jinja/"; }; + vim-jinja-languages = buildVimPluginFrom2Nix { + pname = "vim-jinja-languages"; + version = "2022-04-04"; + src = fetchFromGitHub { + owner = "seirl"; + repo = "vim-jinja-languages"; + rev = "da6689b35691073d9472b1eae0fb01171f6325a5"; + sha256 = "1y9fwzb6dhzgcvqy0dxkbzbsbpidmjdha1vrb1imaycbk7f3gzny"; + }; + meta.homepage = "https://github.com/seirl/vim-jinja-languages/"; + }; + vim-jsbeautify = buildVimPluginFrom2Nix { pname = "vim-jsbeautify"; version = "2020-12-11"; @@ -11924,6 +11936,30 @@ final: prev: meta.homepage = "https://github.com/peitalin/vim-jsx-typescript/"; }; + vim-julia-cell = buildVimPluginFrom2Nix { + pname = "vim-julia-cell"; + version = "2020-08-04"; + src = fetchFromGitHub { + owner = "mroavi"; + repo = "vim-julia-cell"; + rev = "f15961441cb55934fb0d6b15004b48e72decf720"; + sha256 = "13s6dg2k4qmchzjx7fcwch3ccclhkf238aidfa18k3qywqr6fcz2"; + }; + meta.homepage = "https://github.com/mroavi/vim-julia-cell/"; + }; + + vim-just = buildVimPluginFrom2Nix { + pname = "vim-just"; + version = "2023-04-21"; + src = fetchFromGitHub { + owner = "NoahTheDuke"; + repo = "vim-just"; + rev = "9fc9a1afaa9e3567b25f4141a01f6172a1992a0b"; + sha256 = "0wjrqjb0vwp5pk4q2xyrachx9974lxnync1lj40778v5wlsc4w9v"; + }; + meta.homepage = "https://github.com/NoahTheDuke/vim-just/"; + }; + vim-kitty-navigator = buildVimPluginFrom2Nix { pname = "vim-kitty-navigator"; version = "2023-05-25"; @@ -12058,12 +12094,12 @@ final: prev: vim-llvm = buildVimPluginFrom2Nix { pname = "vim-llvm"; - version = "2023-02-27"; + version = "2023-05-31"; src = fetchFromGitHub { owner = "rhysd"; repo = "vim-llvm"; - rev = "fcf5358f55ccc93202e496772f49f70b94230268"; - sha256 = "03fx1v6wq00zspg635c5km75ylidm7j93lipns8s3gsa3h1vs76a"; + rev = "c5d6c6a9ef21df2a32aad0f3b5ca5389f92d06d1"; + sha256 = "1gnamw4whrvw3qbs8bkr45akzwkzinnkyhjpwgzza90w8a99nds6"; }; meta.homepage = "https://github.com/rhysd/vim-llvm/"; }; @@ -12154,12 +12190,12 @@ final: prev: vim-lsp-settings = buildVimPluginFrom2Nix { pname = "vim-lsp-settings"; - version = "2023-05-16"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "mattn"; repo = "vim-lsp-settings"; - rev = "63d1d3108e7f401c6b20257ab8a61602938ff73b"; - sha256 = "0kp0fz0bq559r4ia6r55y8gr5n5w92p9if4hcnvvfrsijj563iqb"; + rev = "b986f8c10056faf289d692ea816bfc22b780e425"; + sha256 = "0kz39yg96284fa33zsblg8bqb5snwx39slm8dv58w3mrifc1bkh1"; }; meta.homepage = "https://github.com/mattn/vim-lsp-settings/"; }; @@ -12275,12 +12311,12 @@ final: prev: vim-matchup = buildVimPluginFrom2Nix { pname = "vim-matchup"; - version = "2023-05-18"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "andymass"; repo = "vim-matchup"; - rev = "b8eca3b588e41e0bb1b3ae200fae88183b91a76d"; - sha256 = "03vwwszjrirrlnvh2gk95p31ps9ylhz6hms7g4by3rvab90av7p2"; + rev = "3625e099b09bff2db5f04082cb09ba679525980c"; + sha256 = "0nb7xnypv046lh73wfqhch54jx5h3xaxjin0qv9b3g0k5zd0mdi6"; }; meta.homepage = "https://github.com/andymass/vim-matchup/"; }; @@ -12345,6 +12381,18 @@ final: prev: meta.homepage = "https://github.com/xolox/vim-misc/"; }; + vim-molokai-delroth = buildVimPluginFrom2Nix { + pname = "vim-molokai-delroth"; + version = "2023-05-30"; + src = fetchFromGitHub { + owner = "delroth"; + repo = "vim-molokai-delroth"; + rev = "134cf0f10117376fab713d42c53418ff31c045c6"; + sha256 = "03diamza3in2w8pffzz4y002n8axgvszkr4gnyj5qa2k428ipzc3"; + }; + meta.homepage = "https://github.com/delroth/vim-molokai-delroth/"; + }; + vim-monokai = buildVimPluginFrom2Nix { pname = "vim-monokai"; version = "2022-12-09"; @@ -13547,12 +13595,12 @@ final: prev: vim-solarized8 = buildVimPluginFrom2Nix { pname = "vim-solarized8"; - version = "2023-04-30"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "lifepillar"; repo = "vim-solarized8"; - rev = "b0b5d4dd1e582cd5f681bb438346ce5848d845fd"; - sha256 = "0dp3vj80dgkm5zv0hjmmx1810z1ajl77sbwb1v2sbhk2c3mgr0cv"; + rev = "2b5bad7944c6990a8dd31ff519268b174b587a70"; + sha256 = "1z45y9cvkavffb8hjj9gq2r2hlha9v0g7cijcirpa7rlpz486qm3"; }; meta.homepage = "https://github.com/lifepillar/vim-solarized8/"; }; @@ -13619,12 +13667,12 @@ final: prev: vim-startuptime = buildVimPluginFrom2Nix { pname = "vim-startuptime"; - version = "2023-05-25"; + version = "2023-06-03"; src = fetchFromGitHub { owner = "dstein64"; repo = "vim-startuptime"; - rev = "8eed46917c5c4882b295729ce053265c2a74ac4d"; - sha256 = "1f893npcny3zgms031nwk872i0f4kgdwk6r2znjm4pb1mqjqa92b"; + rev = "454b3de856b7bd298700de33d79774ca9b9e3875"; + sha256 = "0zs9bp9bdf29jxkld7sff2x85y7pmi7f6am4hvzd9anhch9gnm7j"; }; meta.homepage = "https://github.com/dstein64/vim-startuptime/"; }; @@ -14256,12 +14304,12 @@ final: prev: vim-which-key = buildVimPluginFrom2Nix { pname = "vim-which-key"; - version = "2022-12-07"; + version = "2023-05-31"; src = fetchFromGitHub { owner = "liuchengxu"; repo = "vim-which-key"; - rev = "c0eb7a63e80ed0dc2c91eb8c879b7396a795f775"; - sha256 = "14v47fjp1klnacbbn2ly9ya0xs4dv2bsf9pg391zfcpp9rzf6mrl"; + rev = "9157338680e96bf986f56d8e1cb0e870bc17f5a6"; + sha256 = "0f628cddpgrqdjf7pqlvck8d86kb19fyr80mzq3yjg7gk7sqdjgj"; }; meta.homepage = "https://github.com/liuchengxu/vim-which-key/"; }; @@ -14532,12 +14580,12 @@ final: prev: vimspector = buildVimPluginFrom2Nix { pname = "vimspector"; - version = "2023-05-25"; + version = "2023-06-02"; src = fetchFromGitHub { owner = "puremourning"; repo = "vimspector"; - rev = "168fa06321c400ca6f4e41d03fc4909d0342b73b"; - sha256 = "0d1mlibh0jy7ylhc8xqzl6n59lxdzp1nlm8iy2iylyr2wlvig24v"; + rev = "2dd35dede7712403645a484b6dc5fa23c25172b2"; + sha256 = "0zbjdin5ilxi6190kshlhrdgpjn6agjcrzs49jbs53hsbh0ln12z"; fetchSubmodules = true; }; meta.homepage = "https://github.com/puremourning/vimspector/"; @@ -14545,12 +14593,12 @@ final: prev: vimtex = buildVimPluginFrom2Nix { pname = "vimtex"; - version = "2023-05-25"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "lervag"; repo = "vimtex"; - rev = "ed5c5eafe47dc8e0212f2ecafc0676a550a849e4"; - sha256 = "18bn3c5zlsm90nscrf9j3gjl85b6dzxk8y42d7hv2wwgg1wa4yam"; + rev = "1306bdaabc58c72838fc8dde3f7755bcbdecfabc"; + sha256 = "0axwdmaw7plrvd2zh8l13xyiinwyamvas9h23j0byh4dq8xfr5ds"; }; meta.homepage = "https://github.com/lervag/vimtex/"; }; @@ -14701,12 +14749,12 @@ final: prev: wiki-vim = buildVimPluginFrom2Nix { pname = "wiki.vim"; - version = "2023-05-19"; + version = "2023-05-29"; src = fetchFromGitHub { owner = "lervag"; repo = "wiki.vim"; - rev = "f9769a61bfb70ba0801b79174ed7f2f4d31fdf83"; - sha256 = "1zrn4kcwz0ng4knxd5qml9vkkrz8808g6k56wan9bw6yrxnjy2rq"; + rev = "10340eb9779dd9703f0231427276c5651ed29d10"; + sha256 = "1q30lxzdjys8arf1fpmbxsxhqhwx337gsqpxn24l07zprblwiyr2"; }; meta.homepage = "https://github.com/lervag/wiki.vim/"; }; @@ -14978,12 +15026,12 @@ final: prev: catppuccin-nvim = buildVimPluginFrom2Nix { pname = "catppuccin-nvim"; - version = "2023-05-24"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "catppuccin"; repo = "nvim"; - rev = "1d3eda15703ba70f57e94e6451db55914ff7017f"; - sha256 = "118mrf7h71a5f8qc1m7715824hgwg9cqslmc8adkkghqcgps3ap2"; + rev = "233c4175780d9b4e39ae4fe4535c1e4c14bd76ed"; + sha256 = "0jk2wxs5w7xr9bc7b1g3d2aqbpv6v84ky7xb3r0k982z431k3lsq"; }; meta.homepage = "https://github.com/catppuccin/nvim/"; }; @@ -15002,12 +15050,12 @@ final: prev: chad = buildVimPluginFrom2Nix { pname = "chad"; - version = "2023-05-28"; + version = "2023-06-04"; src = fetchFromGitHub { owner = "ms-jpq"; repo = "chadtree"; - rev = "2eae4d1bdcfcf257c450a02495eb5d012388508b"; - sha256 = "0m4z0ncdrgrc7nfsww7gi950ays43h8s6926q571zsdl9wkq34a1"; + rev = "e9dacf34363ad9a63c7d27caf5d07a9f713e600c"; + sha256 = "0an6sj2li6s2r64xq47j919aj1psn4z81mzyfgndnlpjcqly4rwy"; }; meta.homepage = "https://github.com/ms-jpq/chadtree/"; }; @@ -15050,12 +15098,12 @@ final: prev: lspsaga-nvim-original = buildVimPluginFrom2Nix { pname = "lspsaga-nvim-original"; - version = "2023-05-19"; + version = "2023-06-01"; src = fetchFromGitHub { owner = "nvimdev"; repo = "lspsaga.nvim"; - rev = "01b9633aefd010f272d6c7e3d8293c44fcfe7696"; - sha256 = "1gxfkdiqcjsqykkkq0xmbsif9x6qs22zjx9fv17ac0yky8fg8d0i"; + rev = "c475ace5b8882631b351ef7c3e8078ca9ebbb751"; + sha256 = "1dg96sg0262nm2rzq6h80f51grc4www7ljcx6c7j3l8p0c003gha"; }; meta.homepage = "https://github.com/nvimdev/lspsaga.nvim/"; }; @@ -15086,24 +15134,24 @@ final: prev: nvchad-extensions = buildVimPluginFrom2Nix { pname = "nvchad-extensions"; - version = "2023-05-24"; + version = "2023-05-31"; src = fetchFromGitHub { owner = "nvchad"; repo = "extensions"; - rev = "64c408e5d52e4505a52766f7682323b0f85f654e"; - sha256 = "07wbkkh3ddsfjzx25zimw9ir4cb2z4mmzirdjj03zj8ng9hqvg94"; + rev = "6c01bde163f2c73911df046a2a4883f45a04b611"; + sha256 = "11zcl9k2mqg58658x68q5msd3fiyw4zn8karpd20vwkk881s28nx"; }; meta.homepage = "https://github.com/nvchad/extensions/"; }; nvchad-ui = buildVimPluginFrom2Nix { pname = "nvchad-ui"; - version = "2023-05-27"; + version = "2023-05-31"; src = fetchFromGitHub { owner = "nvchad"; repo = "ui"; - rev = "78ef6543a09cbbc48e8d6fd45dcc24696eba8ecb"; - sha256 = "0lyghhd8ji2nqmn0mvzgfsbilh24rxs20s0hf75y6h4aws86chvh"; + rev = "4f5cec09455a27ca8e59a8c082991cf40013ea82"; + sha256 = "0i4wp2fr1mgwmna9al2c9spa4g5ri2kn0g2rgjqxjvq7fdcr5754"; }; meta.homepage = "https://github.com/nvchad/ui/"; }; @@ -15122,24 +15170,36 @@ final: prev: rose-pine = buildVimPluginFrom2Nix { pname = "rose-pine"; - version = "2023-04-30"; + version = "2023-05-29"; src = fetchFromGitHub { owner = "rose-pine"; repo = "neovim"; - rev = "2eace84d649d76d41dcd44a87a17f64c7c4a586d"; - sha256 = "0y7649xbny9qvwlcszzi9r69f8af92v3ibbkbmy2vyygzbcr3a73"; + rev = "15aac8c529bb38ac39fdb22f7be7f37c0e39dd0c"; + sha256 = "0w60dz8ifgvfk5av1f1ny2g6gchdh4y2q8r3x3nsfg2s2r3wazmp"; }; meta.homepage = "https://github.com/rose-pine/neovim/"; }; + vim-advanced-sorters = buildVimPluginFrom2Nix { + pname = "vim-advanced-sorters"; + version = "2021-11-21"; + src = fetchFromGitHub { + owner = "inkarkat"; + repo = "vim-AdvancedSorters"; + rev = "079856080d42e5ea91fadabc39c2906b2d0a0a67"; + sha256 = "1phzragsq4pflvhjzqlxvdsmiyp7z5b68d2a0frn2rj07av0bn91"; + }; + meta.homepage = "https://github.com/inkarkat/vim-AdvancedSorters/"; + }; + vim-docbk-snippets = buildVimPluginFrom2Nix { pname = "vim-docbk-snippets"; - version = "2021-07-30"; + version = "2023-06-05"; src = fetchFromGitHub { owner = "jhradilek"; repo = "vim-snippets"; - rev = "81a8dcb66886a0717e9ca73c8857ee90c3989063"; - sha256 = "0d6532qx66aiawpq2fdji0mnmvnlg5dnbvds5s4pgzafydikpr70"; + rev = "a279b708a49ca410b41b1628f62c56ab4dc0390b"; + sha256 = "06rnj834nrd0c1g088zfvb2bvbzqzbmbdhga9gza8srjw7p8kvhw"; }; meta.homepage = "https://github.com/jhradilek/vim-snippets/"; }; diff --git a/pkgs/applications/editors/vim/plugins/nvim-treesitter/generated.nix b/pkgs/applications/editors/vim/plugins/nvim-treesitter/generated.nix index ca3f3613dd3db..73551f38d0fdf 100644 --- a/pkgs/applications/editors/vim/plugins/nvim-treesitter/generated.nix +++ b/pkgs/applications/editors/vim/plugins/nvim-treesitter/generated.nix @@ -126,12 +126,12 @@ }; c = buildGrammar { language = "c"; - version = "0.0.0+rev=a015709"; + version = "0.0.0+rev=0906255"; src = fetchFromGitHub { owner = "tree-sitter"; repo = "tree-sitter-c"; - rev = "a015709e7d1bb4f823a2fc53175e0cbee96c1c3e"; - hash = "sha256-q+jXkhhk46NoKAxVj7fWiUZ2iosW1bRJ0A244Cf4zCA="; + rev = "0906255f8de1d319b8ec682ac8c43e7d2524b4fa"; + hash = "sha256-p6k04hWIWawwd99+5OMohr9G2X1HLYJ0VClVsVADalE="; }; meta.homepage = "https://github.com/tree-sitter/tree-sitter-c"; }; @@ -192,23 +192,23 @@ }; comment = buildGrammar { language = "comment"; - version = "0.0.0+rev=f08e7d4"; + version = "0.0.0+rev=94c99a6"; src = fetchFromGitHub { owner = "stsewd"; repo = "tree-sitter-comment"; - rev = "f08e7d44b2923e9da2bf487a2f365d08677d368e"; - hash = "sha256-v3h4x3R+9xbCEFezZlWPPM2Hb4575mbRkkyw7oz7K+U="; + rev = "94c99a66bb5051d8321b5900aee92b76450c50ce"; + hash = "sha256-ma1LIiNuccXNftijehRzABVv7R3Jw9Wcjz0X2vGqaIc="; }; meta.homepage = "https://github.com/stsewd/tree-sitter-comment"; }; commonlisp = buildGrammar { language = "commonlisp"; - version = "0.0.0+rev=c7e8149"; + version = "0.0.0+rev=5b83fc6"; src = fetchFromGitHub { owner = "theHamsta"; repo = "tree-sitter-commonlisp"; - rev = "c7e814975ab0d0d04333d1f32391c41180c58919"; - hash = "sha256-63B9d5feHzwY7WDoeoPAwsuLYgVvoGQf0wkUdDO/A8M="; + rev = "5b83fc6c2e45df43333db605e87615cdf00eb164"; + hash = "sha256-jEUQe0YkQ/HTF6Ld1/7bkBvpRR4nDYgNNkoKe3xQeMc="; }; meta.homepage = "https://github.com/theHamsta/tree-sitter-commonlisp"; }; @@ -223,6 +223,17 @@ }; meta.homepage = "https://github.com/addcninblue/tree-sitter-cooklang"; }; + corn = buildGrammar { + language = "corn"; + version = "0.0.0+rev=6a6b0f4"; + src = fetchFromGitHub { + owner = "jakestanger"; + repo = "tree-sitter-corn"; + rev = "6a6b0f4b1d564392c1b6a8ebcc27d94185f72ede"; + hash = "sha256-7sBdw8AsRvWo8iSALt9slO0HLVoLTPrU7Tt46mMPLoc="; + }; + meta.homepage = "https://github.com/jakestanger/tree-sitter-corn"; + }; cpon = buildGrammar { language = "cpon"; version = "0.0.0+rev=f4b3cbc"; @@ -236,12 +247,12 @@ }; cpp = buildGrammar { language = "cpp"; - version = "0.0.0+rev=70aed2e"; + version = "0.0.0+rev=4c917d5"; src = fetchFromGitHub { owner = "tree-sitter"; repo = "tree-sitter-cpp"; - rev = "70aed2e9e83eb7320ab7c454d3084300bf587037"; - hash = "sha256-3gTLqz1H/7A8+2NiZmR/jBPt4Rh/Wvlcxt/aD7w8T8A="; + rev = "4c917d560572dc2b3704b041715b2729fa199963"; + hash = "sha256-pBlhhUV1lN7wIP1E0vfzAcGGlGDnByp7pdKJzvn4/ts="; }; meta.homepage = "https://github.com/tree-sitter/tree-sitter-cpp"; }; @@ -258,23 +269,23 @@ }; cuda = buildGrammar { language = "cuda"; - version = "0.0.0+rev=9c20a31"; + version = "0.0.0+rev=32efc63"; src = fetchFromGitHub { owner = "theHamsta"; repo = "tree-sitter-cuda"; - rev = "9c20a3120c405db9efda9349cd005c29f2aace3c"; - hash = "sha256-LOCC9Si6RFlxK3TQrApYjAquuhYFp2empRnZMwVSO30="; + rev = "32efc637d841d3adcebb182e4420bc1dd48dab9f"; + hash = "sha256-iD/cfP2pkHAZ207VEcronrbaBgHF13lyQjpkGOrmyEY="; }; meta.homepage = "https://github.com/theHamsta/tree-sitter-cuda"; }; cue = buildGrammar { language = "cue"; - version = "0.0.0+rev=971130a"; + version = "0.0.0+rev=0deecf4"; src = fetchFromGitHub { owner = "eonpatapon"; repo = "tree-sitter-cue"; - rev = "971130aa1d2da22098d75062c024bb1250ff9d62"; - hash = "sha256-s1Y4lGB8DAcZ4ugUs088DXHMDrT46zNeIvZLqZK493s="; + rev = "0deecf48944aa54bb73e5383ba8acfbf9f2c44b4"; + hash = "sha256-myHuYl3JfJ/JvVKM9toprsZ+RJ7L2G0LpzcNTmPTfHE="; }; meta.homepage = "https://github.com/eonpatapon/tree-sitter-cue"; }; @@ -381,12 +392,12 @@ }; elixir = buildGrammar { language = "elixir"; - version = "0.0.0+rev=869dff3"; + version = "0.0.0+rev=4ba9dab"; src = fetchFromGitHub { owner = "elixir-lang"; repo = "tree-sitter-elixir"; - rev = "869dff3ceb8823ca4b17ca33b663667c8e41e8ba"; - hash = "sha256-wEGW4+O8ATlsrzC+qwhTtd39L5gbQM7B7N4MqabfIFQ="; + rev = "4ba9dab6e2602960d95b2b625f3386c27e08084e"; + hash = "sha256-V/7aS+H4X8YzoJOIU9xpJBVvBjbcvwvTxeCsb9X39/I="; }; meta.homepage = "https://github.com/elixir-lang/tree-sitter-elixir"; }; @@ -579,12 +590,12 @@ }; gitcommit = buildGrammar { language = "gitcommit"; - version = "0.0.0+rev=9d8c81e"; + version = "0.0.0+rev=5e3263c"; src = fetchFromGitHub { owner = "gbprod"; repo = "tree-sitter-gitcommit"; - rev = "9d8c81e8e64b3b4f4c36de1425c5fc841097d7f4"; - hash = "sha256-L3v+dQZhwC+kBOHf3YVbZjuCU+idbUDByEdUBmeGAlo="; + rev = "5e3263c856d2de7ecbcfb646352c8e29dc2b83e6"; + hash = "sha256-Hzck3DfxzWz30ma52CbzC/Wyiqx2BlKoaqtiYgPKl/o="; }; meta.homepage = "https://github.com/gbprod/tree-sitter-gitcommit"; }; @@ -601,12 +612,12 @@ }; gleam = buildGrammar { language = "gleam"; - version = "0.0.0+rev=ae79782"; + version = "0.0.0+rev=2d5d6b0"; src = fetchFromGitHub { owner = "gleam-lang"; repo = "tree-sitter-gleam"; - rev = "ae79782c00656945db69641378e688cdb78d52c1"; - hash = "sha256-8zxNOQnYvCHdkeyQwBGKL8fkRRinB3GUogPuw2X5n4I="; + rev = "2d5d6b001ba12bf1c7ac94679d69ac2bed3151dc"; + hash = "sha256-9NHjBGvWLxenbD4dDBdWOOT7fVDIvyigilyd/SDtQtE="; }; meta.homepage = "https://github.com/gleam-lang/tree-sitter-gleam"; }; @@ -623,23 +634,23 @@ }; glsl = buildGrammar { language = "glsl"; - version = "0.0.0+rev=190c86e"; + version = "0.0.0+rev=53ca269"; src = fetchFromGitHub { owner = "theHamsta"; repo = "tree-sitter-glsl"; - rev = "190c86e633e6a6dfdb8a96f8b8460e347ff93f1c"; - hash = "sha256-cwSidS+gzQKrvnmDihay0OfatTsBpEo/HEUIcRng5yk="; + rev = "53ca269cae2a47b1b75791e2bfe843baeb02e903"; + hash = "sha256-qDysihoyGlzAFvhnu6qOjNTIRT9ii/A1B1wNiZNlJs8="; }; meta.homepage = "https://github.com/theHamsta/tree-sitter-glsl"; }; go = buildGrammar { language = "go"; - version = "0.0.0+rev=64457ea"; + version = "0.0.0+rev=7cccc30"; src = fetchFromGitHub { owner = "tree-sitter"; repo = "tree-sitter-go"; - rev = "64457ea6b73ef5422ed1687178d4545c3e91334a"; - hash = "sha256-38pkqR9iEIEf9r3IHJPIYgKfWBlb9aQWi1kij04Vo5k="; + rev = "7cccc30535a40da07092626031120ae6b36202d7"; + hash = "sha256-b9735WP4EyU7gGNuKwwt6orIqXWMy4iQDthMKU52pQE="; }; meta.homepage = "https://github.com/tree-sitter/tree-sitter-go"; }; @@ -766,12 +777,12 @@ }; hlsl = buildGrammar { language = "hlsl"; - version = "0.0.0+rev=cd7a53e"; + version = "0.0.0+rev=eeb138a"; src = fetchFromGitHub { owner = "theHamsta"; repo = "tree-sitter-hlsl"; - rev = "cd7a53e9f82a2612cae0115692f964e9d0c416e2"; - hash = "sha256-fx+9mpZkMxzuLjGOmT5wZZW2oUHfhLYOlTsL7N5QlEk="; + rev = "eeb138aba44de8379dae474624fef65d4288476a"; + hash = "sha256-FIf8rKxM0jTfisjHhNUm/5IXj7njCVhPOXFR8Fhr3Ek="; }; meta.homepage = "https://github.com/theHamsta/tree-sitter-hlsl"; }; @@ -986,12 +997,12 @@ }; latex = buildGrammar { language = "latex"; - version = "0.0.0+rev=b0686a8"; + version = "0.0.0+rev=dfe8919"; src = fetchFromGitHub { owner = "latex-lsp"; repo = "tree-sitter-latex"; - rev = "b0686a83c2429cc04e6d01f067f5a0a8efc0d17b"; - hash = "sha256-/80/7HRLMt0p+SqO4d2wcRjHxZZCLH0ooJs4tNrw+oY="; + rev = "dfe891922ccd2e7cef52eccb2775e1b576727165"; + hash = "sha256-xZUrAikgYoSCwFB6vWvV4K5S3sk0RAEUdDhOqLV9PVw="; }; meta.homepage = "https://github.com/latex-lsp/tree-sitter-latex"; }; @@ -1085,24 +1096,24 @@ }; markdown = buildGrammar { language = "markdown"; - version = "0.0.0+rev=fa6bfd5"; + version = "0.0.0+rev=231f316"; src = fetchFromGitHub { owner = "MDeiml"; repo = "tree-sitter-markdown"; - rev = "fa6bfd51727e4bef99f7eec5f43947f73d64ea7d"; - hash = "sha256-P31TiBW5JqDfYJhWH6pGqD2aWan0Bo1Tl0ONEg7ePnM="; + rev = "231f3163cd27d48f91a4517cfdf72d167a9ef164"; + hash = "sha256-Fcq99HcTOcZwXs0V2zpTiDDQVcGocZQ0we5On9p+Uck="; }; location = "tree-sitter-markdown"; meta.homepage = "https://github.com/MDeiml/tree-sitter-markdown"; }; markdown_inline = buildGrammar { language = "markdown_inline"; - version = "0.0.0+rev=fa6bfd5"; + version = "0.0.0+rev=231f316"; src = fetchFromGitHub { owner = "MDeiml"; repo = "tree-sitter-markdown"; - rev = "fa6bfd51727e4bef99f7eec5f43947f73d64ea7d"; - hash = "sha256-P31TiBW5JqDfYJhWH6pGqD2aWan0Bo1Tl0ONEg7ePnM="; + rev = "231f3163cd27d48f91a4517cfdf72d167a9ef164"; + hash = "sha256-Fcq99HcTOcZwXs0V2zpTiDDQVcGocZQ0we5On9p+Uck="; }; location = "tree-sitter-markdown-inline"; meta.homepage = "https://github.com/MDeiml/tree-sitter-markdown"; @@ -1220,36 +1231,36 @@ }; ocaml = buildGrammar { language = "ocaml"; - version = "0.0.0+rev=1155941"; + version = "0.0.0+rev=2da4930"; src = fetchFromGitHub { owner = "tree-sitter"; repo = "tree-sitter-ocaml"; - rev = "11559418d8de82a2313504dc5bec9983d17ea4e9"; - hash = "sha256-QLZ+ukkYDZGi+hEzaoP98mQRZPXpAbVXt1RlQREafiw="; + rev = "2da49308381b91e19e5d270ec5117616d0e4b135"; + hash = "sha256-seyVqMGRLM1aD+863AvGaDFAhFYLCbQx4eitBcohbWQ="; }; location = "ocaml"; meta.homepage = "https://github.com/tree-sitter/tree-sitter-ocaml"; }; ocaml_interface = buildGrammar { language = "ocaml_interface"; - version = "0.0.0+rev=1155941"; + version = "0.0.0+rev=2da4930"; src = fetchFromGitHub { owner = "tree-sitter"; repo = "tree-sitter-ocaml"; - rev = "11559418d8de82a2313504dc5bec9983d17ea4e9"; - hash = "sha256-QLZ+ukkYDZGi+hEzaoP98mQRZPXpAbVXt1RlQREafiw="; + rev = "2da49308381b91e19e5d270ec5117616d0e4b135"; + hash = "sha256-seyVqMGRLM1aD+863AvGaDFAhFYLCbQx4eitBcohbWQ="; }; location = "interface"; meta.homepage = "https://github.com/tree-sitter/tree-sitter-ocaml"; }; ocamllex = buildGrammar { language = "ocamllex"; - version = "0.0.0+rev=ac1d595"; + version = "0.0.0+rev=6211855"; src = fetchFromGitHub { owner = "atom-ocaml"; repo = "tree-sitter-ocamllex"; - rev = "ac1d5957e719d49bd6acd27439b79843e4daf8ed"; - hash = "sha256-XRxAnl+9F6AYPyd6BGNQOo+KjRs2el78ziyo7NeD1IE="; + rev = "62118551bd9501b8253598b835cb4bef04b31e3d"; + hash = "sha256-oHniBpZj325U93vt4lgHPLqLxZj9YyKMwBdVQV59tZ8="; }; generate = true; meta.homepage = "https://github.com/atom-ocaml/tree-sitter-ocamllex"; @@ -1311,12 +1322,12 @@ }; php = buildGrammar { language = "php"; - version = "0.0.0+rev=ff6a35b"; + version = "0.0.0+rev=a17c0ca"; src = fetchFromGitHub { owner = "tree-sitter"; repo = "tree-sitter-php"; - rev = "ff6a35badb0fe373575196bd728a8a53e9be70bd"; - hash = "sha256-mjpomE8jFusmBjXkFFCnliQ2oKhGYK5DRuIO8GPfb+c="; + rev = "a17c0caaf133f7bb37b3531dadcfd0879bea23f1"; + hash = "sha256-gXJYJ5tkhjh6KgdLfaKcg5EkaiZmY4hAe2MkW68z98M="; }; meta.homepage = "https://github.com/tree-sitter/tree-sitter-php"; }; @@ -1498,12 +1509,12 @@ }; racket = buildGrammar { language = "racket"; - version = "0.0.0+rev=ed5369a"; + version = "0.0.0+rev=e196cd4"; src = fetchFromGitHub { owner = "6cdh"; repo = "tree-sitter-racket"; - rev = "ed5369ad17166c0749ab7241d826c438bd69338d"; - hash = "sha256-/vvmVirIXH6uAtqEGvG//3XobLFzWCYXIGe4e0N1DsU="; + rev = "e196cd417c425c2c3dc54f3b7b7666fe968ba50b"; + hash = "sha256-BSHa+CnxMflSCwmxrtMGLS9/wqBfi7NFwmG2LyXKm6c="; }; meta.homepage = "https://github.com/6cdh/tree-sitter-racket"; }; @@ -1564,12 +1575,12 @@ }; rst = buildGrammar { language = "rst"; - version = "0.0.0+rev=25e6328"; + version = "0.0.0+rev=c7c2b24"; src = fetchFromGitHub { owner = "stsewd"; repo = "tree-sitter-rst"; - rev = "25e6328872ac3a764ba8b926aea12719741103f1"; - hash = "sha256-g3CovnXY15SkxAdVk15M4hAxizqLc551omwKKG+Vozg="; + rev = "c7c2b24918e231072af2d10c03b4893818de9d5d"; + hash = "sha256-qLnP6OCWJv/CbRCsgKKwLY+QVulQdpqgVO3EjuPwypE="; }; meta.homepage = "https://github.com/stsewd/tree-sitter-rst"; }; @@ -1597,23 +1608,23 @@ }; scala = buildGrammar { language = "scala"; - version = "0.0.0+rev=17a19b0"; + version = "0.0.0+rev=236c7b2"; src = fetchFromGitHub { owner = "tree-sitter"; repo = "tree-sitter-scala"; - rev = "17a19b0f0505eec059b82e1b2fd8928f5f6f0b02"; - hash = "sha256-YvFjzxBQQmL0+Lw8olMiomu6sDiqdTTPuiygHwB3Kww="; + rev = "236c7b20dbddedb031ce40517fafc027434f6860"; + hash = "sha256-M6HOkS/E5OKDUpzG5hgXdD7ZkWIVIdbFUXW4TC+Spkg="; }; meta.homepage = "https://github.com/tree-sitter/tree-sitter-scala"; }; scheme = buildGrammar { language = "scheme"; - version = "0.0.0+rev=dd9a73d"; + version = "0.0.0+rev=0c763bd"; src = fetchFromGitHub { owner = "6cdh"; repo = "tree-sitter-scheme"; - rev = "dd9a73d851238881a3a9426298d69742d24b7842"; - hash = "sha256-KyR7MuZBMkQ3fWRaP1nQqo/ih2v3XM2v5tdu0SGuDOA="; + rev = "0c763bd5f85b18e354bc338d17cf1daa23b478b1"; + hash = "sha256-MHQdWH7nNBAJGLb6DN0NmpwQIIyO0+JznVPkTvryupU="; }; meta.homepage = "https://github.com/6cdh/tree-sitter-scheme"; }; @@ -1718,12 +1729,12 @@ }; supercollider = buildGrammar { language = "supercollider"; - version = "0.0.0+rev=90c6d9f"; + version = "0.0.0+rev=3b35bd0"; src = fetchFromGitHub { owner = "madskjeldgaard"; repo = "tree-sitter-supercollider"; - rev = "90c6d9f777d2b8c4ce497c48b5f270a44bcf3ea0"; - hash = "sha256-YF+JFLcRHrWIRky2aI5s294+G6jSyVUgt/1bnZkYGLw="; + rev = "3b35bd0fded4423c8fb30e9585c7bacbcd0e8095"; + hash = "sha256-mWTOZ3u9VGjEhjDeYJGd8aVxjVG9kJgKX/wHMZSsaEU="; }; meta.homepage = "https://github.com/madskjeldgaard/tree-sitter-supercollider"; }; @@ -1774,13 +1785,13 @@ }; t32 = buildGrammar { language = "t32"; - version = "0.0.0+rev=b4dca35"; + version = "0.0.0+rev=4e581fc"; src = fetchFromGitea { domain = "codeberg.org"; owner = "xasc"; repo = "tree-sitter-t32"; - rev = "b4dca3527463274de1f3263c0e1c329bc3b4f514"; - hash = "sha256-qWtlk7r6UmEEsbz6k7eGTv4WdWbcaUn2rUQsQ4SxqJA="; + rev = "4e581fcd17d76651aa92759a68f9a8186b9fe8dc"; + hash = "sha256-SUft3MpM8fSLyojgRs6uaZxWDfoxNvL5Orb7XcrztYo="; }; meta.homepage = "https://codeberg.org/xasc/tree-sitter-t32"; }; @@ -1933,12 +1944,12 @@ }; usd = buildGrammar { language = "usd"; - version = "0.0.0+rev=04816b1"; + version = "0.0.0+rev=718a6b3"; src = fetchFromGitHub { owner = "ColinKennedy"; repo = "tree-sitter-usd"; - rev = "04816b1fbfe548e1446a9efe8b069f3f6e095504"; - hash = "sha256-n9sK02luVOv88P8SDCKIaBlEYtYYT0fQ+fjlYuP9AJY="; + rev = "718a6b3e939904e0b4fe7cff6742e96af4781f4b"; + hash = "sha256-6U4TreAeAGB7WRUtTXdxQvNa6Sl6E+f329/SZ6DOQ+0="; }; meta.homepage = "https://github.com/ColinKennedy/tree-sitter-usd"; }; diff --git a/pkgs/applications/editors/vim/plugins/overrides.nix b/pkgs/applications/editors/vim/plugins/overrides.nix index 6ec20ca15db24..9aa3dc18e99e1 100644 --- a/pkgs/applications/editors/vim/plugins/overrides.nix +++ b/pkgs/applications/editors/vim/plugins/overrides.nix @@ -746,6 +746,18 @@ self: super: { vimCommandCheck = "MinimapToggle"; }); + minsnip-nvim = buildVimPluginFrom2Nix { + pname = "minsnip.nvim"; + version = "2022-01-04"; + src = fetchFromGitHub { + owner = "jose-elias-alvarez"; + repo = "minsnip.nvim"; + rev = "6ae2f3247b3a2acde540ccef2e843fdfcdfebcee"; + sha256 = "1db5az5civ2bnqg7v3g937mn150ys52258c3glpvdvyyasxb4iih"; + }; + meta.homepage = "https://github.com/jose-elias-alvarez/minsnip.nvim/"; + }; + ncm2 = super.ncm2.overrideAttrs (old: { dependencies = with self; [ nvim-yarp ]; }); @@ -900,7 +912,7 @@ self: super: { pname = "sg-nvim-rust"; inherit (old) version src; - cargoHash = "sha256-gnQNQlW/c1vzyR+HbYn7rpxZ1C6WXFcqpylIOTUMZ6g="; + cargoHash = "sha256-9iXKVlhoyyRXCP4Bx9rCHljETdE9UD9PNWqPYDurQnI="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/applications/editors/vim/plugins/vim-clap/Cargo.lock b/pkgs/applications/editors/vim/plugins/vim-clap/Cargo.lock index d1acdf2a91fc2..6a696afb0dc05 100644 --- a/pkgs/applications/editors/vim/plugins/vim-clap/Cargo.lock +++ b/pkgs/applications/editors/vim/plugins/vim-clap/Cargo.lock @@ -749,9 +749,9 @@ dependencies = [ [[package]] name = "h2" -version = "0.3.16" +version = "0.3.17" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5be7b54589b581f624f566bf5d8eb2bab1db736c51528720b6bd36b96b55924d" +checksum = "66b91535aa35fea1523ad1b86cb6b53c28e0ae566ba4a460f4457e936cad7c6f" dependencies = [ "bytes", "fnv", @@ -1086,7 +1086,7 @@ dependencies = [ [[package]] name = "maple" -version = "0.1.43" +version = "0.1.44" dependencies = [ "built", "chrono", diff --git a/pkgs/applications/editors/vim/plugins/vim-clap/default.nix b/pkgs/applications/editors/vim/plugins/vim-clap/default.nix index 80b745683444f..81e277fb999ef 100644 --- a/pkgs/applications/editors/vim/plugins/vim-clap/default.nix +++ b/pkgs/applications/editors/vim/plugins/vim-clap/default.nix @@ -7,16 +7,17 @@ , stdenv , darwin , vimUtils +, nix-update-script }: let - version = "0.43"; + version = "0.44"; src = fetchFromGitHub { owner = "liuchengxu"; repo = "vim-clap"; rev = "v${version}"; - hash = "sha256-UHsDSah8Fn67w11s/lwL76qbGPqXhz6tYlBBuiqTNXs="; + hash = "sha256-3kPRntl5tHsITrEJaRRcidowcyMpXDTVV5jFN/GV8Sk="; }; meta = with lib; { @@ -62,5 +63,8 @@ vimUtils.buildVimPluginFrom2Nix { passthru = { inherit maple; + updateScript = nix-update-script { + attrPath = "vimPlugins.vim-clap.maple"; + }; }; } diff --git a/pkgs/applications/editors/vim/plugins/vim-plugin-names b/pkgs/applications/editors/vim/plugins/vim-plugin-names index bd7c802d36b0e..008196645f870 100644 --- a/pkgs/applications/editors/vim/plugins/vim-plugin-names +++ b/pkgs/applications/editors/vim/plugins/vim-plugin-names @@ -436,7 +436,6 @@ https://github.com/chikamichi/mediawiki.vim/,HEAD, https://github.com/savq/melange-nvim/,, https://github.com/echasnovski/mini.nvim/,, https://github.com/wfxr/minimap.vim/,, -https://github.com/jose-elias-alvarez/minsnip.nvim/,, https://github.com/jghauser/mkdir.nvim/,main, https://github.com/SidOfc/mkdx/,, https://github.com/tomasr/molokai/,, @@ -572,6 +571,7 @@ https://github.com/bfredl/nvim-luadev/,HEAD, https://github.com/rafcamlet/nvim-luapad/,, https://github.com/scalameta/nvim-metals/,, https://github.com/gpanders/nvim-moonwalk/,, +https://github.com/SmiteshP/nvim-navbuddy/,, https://github.com/smiteshp/nvim-navic/,HEAD, https://github.com/AckslD/nvim-neoclip.lua/,, https://github.com/yamatsum/nvim-nonicons/,, @@ -818,6 +818,7 @@ https://github.com/nordtheme/vim/,,nord-vim https://github.com/dracula/vim/,,dracula-vim https://github.com/embark-theme/vim/,,embark-vim https://github.com/catppuccin/vim/,HEAD,catppuccin-vim +https://github.com/inkarkat/vim-AdvancedSorters/,,vim-advanced-sorters https://github.com/Konfekt/vim-CtrlXA/,, https://github.com/konfekt/vim-DetectSpellLang/,, https://github.com/dpelle/vim-LanguageTool/,, @@ -997,6 +998,7 @@ https://github.com/artur-shaik/vim-javacomplete2/,, https://github.com/pangloss/vim-javascript/,, https://github.com/jelera/vim-javascript-syntax/,, https://github.com/lepture/vim-jinja/,, +https://github.com/seirl/vim-jinja-languages/,HEAD, https://github.com/maksimr/vim-jsbeautify/,, https://github.com/heavenshell/vim-jsdoc/,, https://github.com/elzr/vim-json/,, @@ -1004,6 +1006,8 @@ https://github.com/google/vim-jsonnet/,, https://github.com/mogelbrod/vim-jsonpath/,HEAD, https://github.com/MaxMEllon/vim-jsx-pretty/,, https://github.com/peitalin/vim-jsx-typescript/,, +https://github.com/mroavi/vim-julia-cell/,HEAD, +https://github.com/NoahTheDuke/vim-just/,, https://github.com/knubie/vim-kitty-navigator/,, https://github.com/farmergreg/vim-lastplace/,, https://github.com/xuhdev/vim-latex-live-preview/,, @@ -1039,6 +1043,7 @@ https://github.com/samoshkin/vim-mergetool/,, https://github.com/idanarye/vim-merginal/,, https://github.com/david-a-wheeler/vim-metamath/,, https://github.com/xolox/vim-misc/,, +https://github.com/delroth/vim-molokai-delroth/,HEAD, https://github.com/crusoexia/vim-monokai/,, https://github.com/phanviet/vim-monokai-pro/,, https://github.com/patstockwell/vim-monokai-tasty/,HEAD, diff --git a/pkgs/applications/editors/vscode/extensions/default.nix b/pkgs/applications/editors/vscode/extensions/default.nix index cd7c0922df55c..25d7012651dff 100644 --- a/pkgs/applications/editors/vscode/extensions/default.nix +++ b/pkgs/applications/editors/vscode/extensions/default.nix @@ -305,6 +305,23 @@ let }; }; + asdine.cue = buildVscodeMarketplaceExtension { + mktplcRef = { + name = "cue"; + publisher = "asdine"; + version = "0.3.2"; + sha256 = "sha256-jMXqhgjRdM3UG/9NtiwWAg61mBW8OYVAKDWgb4hzhA4="; + }; + meta = { + description = "Cue language support for Visual Studio Code"; + downloadPage = "https://marketplace.visualstudio.com/items?itemName=asdine.cue"; + homepage = "https://github.com/asdine/vscode-cue"; + changelog = "https://marketplace.visualstudio.com/items/asdine.cue/changelog"; + license = lib.licenses.mit; + maintainers = [lib.maintainers.matthewpi]; + }; + }; + astro-build.astro-vscode = buildVscodeMarketplaceExtension { mktplcRef = { name = "astro-vscode"; @@ -416,6 +433,22 @@ let }; }; + ban.spellright = buildVscodeMarketplaceExtension { + mktplcRef = { + publisher = "ban"; + name = "spellright"; + version = "3.0.112"; + sha256 = "sha256-79Yg4I0OkfG7PaDYnTA8HK8jrSxre4FGriq0Baiq7wA="; + }; + meta = { + description = "A Visual Studio Code extension for Spellchecker"; + changelog = "https://marketplace.visualstudio.com/items/ban.spellright/changelog"; + homepage = "https://github.com/bartosz-antosik/vscode-spellright"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ onedragon ]; + }; + }; + bbenoist.nix = buildVscodeMarketplaceExtension { mktplcRef = { name = "Nix"; @@ -583,18 +616,51 @@ let }; }; - catppuccin.catppuccin-vsc = buildVscodeMarketplaceExtension { + catppuccin = { + catppuccin-vsc = buildVscodeMarketplaceExtension { + mktplcRef = { + name = "catppuccin-vsc"; + publisher = "catppuccin"; + version = "2.6.1"; + sha256 = "sha256-B56b7PeuVnkxEqvd4vL9TYO7s8fuA+LOCTbJQD9e7wY="; + }; + meta = { + description = "Soothing pastel theme for VSCode"; + license = lib.licenses.mit; + downloadPage = "https://marketplace.visualstudio.com/items?itemName=Catppuccin.catppuccin-vsc"; + maintainers = [ lib.maintainers.nullx76 ]; + }; + }; + catppuccin-vsc-icons = buildVscodeMarketplaceExtension { + mktplcRef = { + name = "catppuccin-vsc-icons"; + publisher = "catppuccin"; + version = "0.12.0"; + sha256 = "sha256-i47tY6DSVtV8Yf6AgZ6njqfhaUFGEpgbRcBF70l2Xe0="; + }; + meta = { + description = "Soothing pastel icon theme for VSCode"; + license = lib.licenses.mit; + downloadPage = "https://marketplace.visualstudio.com/items?itemName=Catppuccin.catppuccin-vsc-icons"; + maintainers = [ lib.maintainers.laurent-f1z1 ]; + }; + }; + }; + + charliermarsh.ruff = buildVscodeMarketplaceExtension { mktplcRef = { - name = "catppuccin-vsc"; - publisher = "catppuccin"; - version = "2.6.1"; - sha256 = "sha256-B56b7PeuVnkxEqvd4vL9TYO7s8fuA+LOCTbJQD9e7wY="; + name = "ruff"; + publisher = "charliermarsh"; + version = "2023.16.0"; + sha256 = "sha256-MCRfG2CmGXLX15Qv/cxuH8VE1lJLPs4tXlCNnFqm5lc="; }; meta = { - description = "Soothing pastel theme for VSCode"; license = lib.licenses.mit; - downloadPage = "https://marketplace.visualstudio.com/items?itemName=Catppuccin.catppuccin-vsc"; - maintainers = [ lib.maintainers.nullx76 ]; + changelog = "https://github.com/charliermarsh/ruff-vscode/releases"; + description = "Ruff extension for Visual Studio Code"; + downloadPage = "https://marketplace.visualstudio.com/items?itemName=charliermarsh.ruff"; + homepage = "https://github.com/charliermarsh/ruff-vscode/"; + maintainers = [ lib.maintainers.azd325 ]; }; }; @@ -673,6 +739,30 @@ let }; }; + w88975.code-translate = buildVscodeMarketplaceExtension { + mktplcRef = { + name = "code-translate"; + publisher = "w88975"; + version = "1.0.20"; + sha256 = "sha256-blqLK7S+RmEoyr9zktS5/SNC0GeSXnNpbhltyajoAfw="; + }; + meta = { + description = "A Visual Studio Code extension to provide purely hover translation"; + longDescription = '' + Code Translate is a purely hover translation extension + - Non-intrusive display of translation results: perfectly integrated with VS Code code analysis. + - Powerful word splitting capabilities: supports various forms of word splitting such as camel case and underscore. + - Rich local vocabulary: includes 3.4+ million offline words, supporting various rare words. + - Based on a rich local vocabulary: Code Translate has super-fast query speed, with each word typically queried in less than 10ms. + - Multi-platform support: supports both the desktop version and online version of VS Code, and the plugin can be used on both versions. + ''; + homepage = "https://github.com/w88975/code-translate-vscode"; + changelog = "https://marketplace.visualstudio.com/items/w88975.code-translate/changelog"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ onedragon ]; + }; + }; + colejcummins.llvm-syntax-highlighting = buildVscodeMarketplaceExtension { mktplcRef = { name = "llvm-syntax-highlighting"; @@ -1176,6 +1266,22 @@ let }; }; + ExiaHuang.dictionary = buildVscodeMarketplaceExtension { + mktplcRef = { + publisher = "ExiaHuang"; + name = "dictionary"; + version = "0.0.2"; + sha256 = "sha256-caNcbDTB/F2mdlGpfIfJv13lzY5Wwj7p7r8dAte9+3A="; + }; + meta = { + description = "A Visual Studio Code extension of using chinese-english dictonary in right-click menu"; + homepage = "https://github.com/exiahuang/fanyi-vscode"; + changelog = "https://marketplace.visualstudio.com/items/ExiaHuang.dictionary/changelog"; + license = lib.licenses.gpl3Only; + maintainers = with lib.maintainers; [ onedragon ]; + }; + }; + file-icons.file-icons = buildVscodeMarketplaceExtension { meta = { changelog = "https://marketplace.visualstudio.com/items/file-icons.file-icons/changelog"; @@ -1303,6 +1409,23 @@ let }; }; + funkyremi.vscode-google-translate = buildVscodeMarketplaceExtension { + mktplcRef = { + publisher = "funkyremi"; + name = "vscode-google-translate"; + version = "1.4.13"; + sha256 = "sha256-9Vo6lwqD1eE3zY0Gi9ME/6lPwmwuJ3Iq9StHPvncnM4="; + }; + meta = { + description = "A Visual Studio Code extension using google translation to helping you quickly translate text right in your code rocket"; + downloadPage = "https://marketplace.visualstudio.com/items?itemName=funkyremi.vscode-google-translate"; + homepage = "https://github.com/funkyremi/vscode-google-translate.git"; + changelog = "https://marketplace.visualstudio.com/items/funkyremi.vscode-google-translate/changelog"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ onedragon ]; + }; + }; + gencer.html-slim-scss-css-class-completion = buildVscodeMarketplaceExtension { mktplcRef = { name = "html-slim-scss-css-class-completion"; @@ -1362,6 +1485,22 @@ let }; }; + github.copilot-chat = buildVscodeMarketplaceExtension { + mktplcRef = { + publisher = "github"; + name = "copilot-chat"; + version = "0.1.2023060101"; + sha256 = "sha256-g3UIcy2TpD3m8EamxneUXYAV/bbCPvPhOWdcuXPkK9g="; + }; + meta = { + description = "GitHub Copilot Chat is a companion extension to GitHub Copilot that houses experimental chat features"; + downloadPage = "https://marketplace.visualstudio.com/items?itemName=GitHub.copilot-chat"; + homepage = "https://github.com/features/copilot"; + license = lib.licenses.unfree; + maintainers = [ lib.maintainers.laurent-f1z1 ]; + }; + }; + github.github-vscode-theme = buildVscodeMarketplaceExtension { mktplcRef = { name = "github-vscode-theme"; @@ -1577,6 +1716,26 @@ let }; }; + intellsmi.comment-translate = buildVscodeMarketplaceExtension { + mktplcRef = { + publisher = "intellsmi"; + name = "comment-translate"; + version = "2.2.4"; + sha256 = "sha256-g6mlScxv8opZuqgWtTJ3k0Yo7W7WzIkwB+8lWf6cMiU="; + }; + meta = { + description = "A Visual Studio Code extension to translate the comments for computer language"; + longDescription = '' + This plugin uses the Google Translate API to translate comments for the VSCode programming language. + ''; + homepage = "https://github.com/intellism/vscode-comment-translate/blob/HEAD/doc/README.md"; + downloadPage = "https://marketplace.visualstudio.com/items?itemName=intellsmi.comment-translate"; + changelog = "https://marketplace.visualstudio.com/items/intellsmi.comment-translate/changelog"; + maintainers = with lib.maintainers; [ onedragon ]; + license = lib.licenses.mit; + }; + }; + ionide.ionide-fsharp = buildVscodeMarketplaceExtension { mktplcRef = { name = "Ionide-fsharp"; @@ -1627,6 +1786,22 @@ let }; }; + janet-lang.vscode-janet = buildVscodeMarketplaceExtension { + mktplcRef = { + name = "vscode-janet"; + publisher = "janet-lang"; + version = "0.0.2"; + sha256 = "sha256-oj0e++z2BtadIXOnTlocIIHliYweZ1iyrV08DwatfLI="; + }; + meta = { + description = "Janet language support for Visual Studio Code"; + downloadPage = "https://marketplace.visualstudio.com/items?itemName=janet-lang.vscode-janet"; + homepage = "https://github.com/janet-lang/vscode-janet"; + license = lib.licenses.mit; + maintainers = [ lib.maintainers.wackbyte ]; + }; + }; + jdinhlife.gruvbox = buildVscodeMarketplaceExtension { mktplcRef = { name = "gruvbox"; @@ -2185,6 +2360,21 @@ let }; }; + ms-vscode.live-server = buildVscodeMarketplaceExtension { + mktplcRef = { + name = "live-server"; + publisher = "ms-vscode"; + version = "0.4.8"; + sha256 = "sha256-/IrLq+nNxwQB1S1NIGYkv24DOY7Mc25eQ+orUfh42pg="; + }; + meta = { + description = "Launch a development local Server with live reload feature for static & dynamic pages"; + downloadPage = "https://marketplace.visualstudio.com/items?itemName=ms-vscode.live-server"; + homepage = "https://github.com/microsoft/vscode-livepreview"; + license = lib.licenses.mit; + }; + }; + ms-vscode.makefile-tools = buildVscodeMarketplaceExtension { mktplcRef = { name = "makefile-tools"; @@ -2546,6 +2736,27 @@ let }; }; + RoweWilsonFrederiskHolme.wikitext = buildVscodeMarketplaceExtension { + mktplcRef = { + name = "wikitext"; + publisher = "RoweWilsonFrederiskHolme"; + version = "3.8.0"; + sha256 = "30540a85163e797028eec9bc3db1866bbf473e98615bf6ade6d1d672017ebe52"; + }; + meta = { + description = "Extension that helps users view and write MediaWiki's Wikitext files"; + longDescription = '' + With this extension, you can more easily discover your grammatical problems + through the marked and styled text. The plugin is based on MediaWiki's + Wikitext standard, but the rules are somewhat stricter, which helps users + write text that is easier to read and maintain. + ''; + downloadPage = "https://marketplace.visualstudio.com/items?itemName=RoweWilsonFrederiskHolme.wikitext"; + homepage = "https://github.com/Frederisk/Wikitext-VSCode-Extension"; + license = lib.licenses.mit; + }; + }; + rubbersheep.gi = buildVscodeMarketplaceExtension { mktplcRef = { name = "gi"; @@ -2628,6 +2839,22 @@ let }; }; + seatonjiang.gitmoji-vscode = buildVscodeMarketplaceExtension { + mktplcRef = { + publisher = "seatonjiang"; + name = "gitmoji-vscode"; + version = "1.2.2"; + sha256 = "sha256-+lwbCLV62y1IHrjCygBphQZJUu+ZApYTwBQld5uu12w="; + }; + meta = { + description = "Gitmoji tool for git commit messages in VSCode"; + downloadPage = "https://marketplace.visualstudio.com/items?itemName=seatonjiang.gitmoji-vscode"; + homepage = "https://github.com/seatonjiang/gitmoji-vscode/"; + license = lib.licenses.mit; + maintainers = [ lib.maintainers.laurent-f1z1 ]; + }; + }; + serayuzgur.crates = buildVscodeMarketplaceExtension { mktplcRef = { name = "crates"; @@ -2879,6 +3106,23 @@ let }; }; + tailscale.vscode-tailscale = buildVscodeMarketplaceExtension { + mktplcRef = { + name = "vscode-tailscale"; + publisher = "tailscale"; + version = "0.4.0"; + sha256 = "sha256-c/BZHKHs2EKd37148dSxEeP1wBXv75HhDqzegmHPjOs="; + }; + meta = { + changelog = "https://marketplace.visualstudio.com/items/tailscale.vscode-tailscale/changelog"; + description = "VSCode extension to share a port over the internet with Tailscale Funnel"; + downloadPage = "https://marketplace.visualstudio.com/items?itemName=Tailscale.vscode-tailscale"; + homepage = "https://github.com/tailscale-dev/vscode-tailscale"; + license = lib.licenses.mit; + maintainers = [ lib.maintainers.drupol ]; + }; + }; + takayama.vscode-qq = buildVscodeMarketplaceExtension { mktplcRef = { publisher = "takayama"; @@ -2903,6 +3147,22 @@ let }; }; + techtheawesome.rust-yew = buildVscodeMarketplaceExtension { + mktplcRef = { + name = "rust-yew"; + publisher = "techtheawesome"; + version = "0.2.2"; + sha256 = "sha256-t9DYY1fqW7M5F1pbIUtnnodxMzIzURew4RXT78djWMI="; + }; + meta = { + description = "A VSCode extension that provides some language features for Yew's html macro syntax"; + downloadPage = "https://marketplace.visualstudio.com/items?itemName=TechTheAwesome.rust-yew"; + homepage = "https://github.com/TechTheAwesome/code-yew-server"; + license = lib.licenses.gpl3Only; + maintainers = [ lib.maintainers.CardboardTurkey ]; + }; + }; + theangryepicbanana.language-pascal = buildVscodeMarketplaceExtension { mktplcRef = { name = "language-pascal"; @@ -3315,6 +3575,27 @@ let }; }; + yzhang.dictionary-completion = buildVscodeMarketplaceExtension { + mktplcRef = { + publisher = "yzhang"; + name = "dictionary-completion"; + version = "1.2.2"; + sha256 = "sha256-dpJcJARRKzRNHfXs/qknud8OQ8xIyeaVnt/EcDq0k4E="; + }; + meta = { + description = "A Visual Studio Code extension to help user easyly finish long words "; + longDescription = '' + Dictionary completion allows user to get a list of keywords, based off of the current word at the cursor. + This is useful if you are typing a long word (e.g. acknowledgeable) and don't want to finish typing or don't remember the Spelling + ''; + homepage = "https://github.com/yzhang-gh/vscode-dic-completion#readme"; + changelog = "https://marketplace.visualstudio.com/items/yzhang.dictionary-completion/changelog"; + downloadPage = "https://marketplace.visualstudio.com/items?itemName=yzhang.dictionary-completion"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ onedragon ]; + }; + }; + yzhang.markdown-all-in-one = buildVscodeMarketplaceExtension { mktplcRef = { name = "markdown-all-in-one"; diff --git a/pkgs/applications/editors/vscode/extensions/vscodeEnv.nix b/pkgs/applications/editors/vscode/extensions/vscodeEnv.nix index 818cca51772a8..db00ba13e3c84 100644 --- a/pkgs/applications/editors/vscode/extensions/vscodeEnv.nix +++ b/pkgs/applications/editors/vscode/extensions/vscodeEnv.nix @@ -19,13 +19,13 @@ , keybindings ? {} , createKeybindingsIfDoesNotExists ? true , user-data-dir ? ''"''${TMP}''${name}"/vscode-data-dir'' -# if file exists will use it and import the extensions in it into this dervation else will use empty extensions list +# if file exists will use it and import the extensions in it into this derivation else will use empty extensions list # this file will be created/updated by vscodeExts2nix when vscode exists , mutableExtensionsFile }: let mutableExtensionsFilePath = toString mutableExtensionsFile; - mutableExtensions = lib.optionals builtins.pathExists mutableExtensionsFile (import mutableExtensionsFilePath); + mutableExtensions = lib.optionals (builtins.pathExists mutableExtensionsFile) (import mutableExtensionsFilePath); vscodeWithConfiguration = import ./vscodeWithConfiguration.nix { inherit lib writeShellScriptBin extensionsFromVscodeMarketplace; vscodeDefault = vscode; diff --git a/pkgs/applications/editors/vscode/vscode.nix b/pkgs/applications/editors/vscode/vscode.nix index 8baa691b5a307..da716255d2305 100644 --- a/pkgs/applications/editors/vscode/vscode.nix +++ b/pkgs/applications/editors/vscode/vscode.nix @@ -1,7 +1,7 @@ { stdenv, lib, callPackage, fetchurl , isInsiders ? false , commandLineArgs ? "" -, useVSCodeRipgrep ? false +, useVSCodeRipgrep ? stdenv.isDarwin }: let diff --git a/pkgs/applications/editors/vscode/vscodium.nix b/pkgs/applications/editors/vscode/vscodium.nix index 1dca2081b0a83..6d9ac65663728 100644 --- a/pkgs/applications/editors/vscode/vscodium.nix +++ b/pkgs/applications/editors/vscode/vscodium.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, callPackage, fetchurl, nixosTests, commandLineArgs ? "", useVSCodeRipgrep ? false }: +{ lib, stdenv, callPackage, fetchurl, nixosTests, commandLineArgs ? "", useVSCodeRipgrep ? stdenv.isDarwin }: let inherit (stdenv.hostPlatform) system; diff --git a/pkgs/applications/emulators/blink/default.nix b/pkgs/applications/emulators/blink/default.nix new file mode 100644 index 0000000000000..e522546078cff --- /dev/null +++ b/pkgs/applications/emulators/blink/default.nix @@ -0,0 +1,32 @@ +{ stdenv, fetchFromGitHub, lib }: + +stdenv.mkDerivation (finalAttrs: { + pname = "blink"; + version = "1.0.0"; + + src = fetchFromGitHub { + owner = "jart"; + repo = "blink"; + rev = finalAttrs.version; + hash = "sha256-W7yL7Ut3MRygJhFGr+GIj/CK57MkuDTcenft8IvH7jU="; + }; + + # 'make check' requires internet connection + doCheck = true; + checkTarget = "test"; + + meta = { + description = "Tiniest x86-64-linux emulator"; + longDescription = '' + blink is a virtual machine that runs x86-64-linux programs on different operating systems and hardware architectures. It's designed to do the same thing as the qemu-x86_64 command, except that + - blink is much smaller in size than qemu-x86_64 + - blink will run your Linux binaries on any POSIX platform, whereas qemu-x86_64 only supports Linux + - blink goes 2x faster than qemu-x86_64 on some benchmarks, such as SSE integer / floating point math. Blink is also faster at running ephemeral programs such as compilers + ''; + + homepage = "https://github.com/jart/blink"; + license = lib.licenses.isc; + maintainers = with lib.maintainers; [ t4ccer ]; + platforms = lib.platforms.all; + }; +}) diff --git a/pkgs/applications/emulators/emulationstation/default.nix b/pkgs/applications/emulators/emulationstation/default.nix index 2acb81cf032f3..aa8192d3ec1d2 100644 --- a/pkgs/applications/emulators/emulationstation/default.nix +++ b/pkgs/applications/emulators/emulationstation/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, pkg-config, cmake, curl, boost169, eigen +{ lib, stdenv, fetchFromGitHub, pkg-config, cmake, curl, boost, eigen , freeimage, freetype, libGLU, libGL, SDL2, alsa-lib, libarchive , fetchpatch }: @@ -20,8 +20,12 @@ stdenv.mkDerivation { }) ]; + postPatch = '' + sed -i "7i #include <stack>" es-app/src/views/gamelist/ISimpleGameListView.h + ''; + nativeBuildInputs = [ pkg-config cmake ]; - buildInputs = [ alsa-lib boost169 curl eigen freeimage freetype libarchive libGLU libGL SDL2 ]; + buildInputs = [ alsa-lib boost curl eigen freeimage freetype libarchive libGLU libGL SDL2 ]; installPhase = '' install -D ../emulationstation $out/bin/emulationstation diff --git a/pkgs/applications/emulators/mame/default.nix b/pkgs/applications/emulators/mame/default.nix index ac5f0f5ce0346..40c3fdfe8b95d 100644 --- a/pkgs/applications/emulators/mame/default.nix +++ b/pkgs/applications/emulators/mame/default.nix @@ -15,7 +15,6 @@ , libjpeg , libpcap , libpulseaudio -, lua5_3 , makeDesktopItem , makeWrapper , papirus-icon-theme @@ -39,14 +38,14 @@ let in stdenv.mkDerivation rec { pname = "mame"; - version = "0.252"; + version = "0.255"; srcVersion = builtins.replaceStrings [ "." ] [ "" ] version; src = fetchFromGitHub { owner = "mamedev"; repo = "mame"; rev = "mame${srcVersion}"; - hash = "sha256-snef00pTbukiLQp8eAMfuIqNV3l0wP1+KlpFnS3iKFg="; + hash = "sha256-pdPKxEHxynBIB2lUG6yjKNcY8MlOlk4pfr7WwqaA9Dk="; }; outputs = [ "out" "tools" ]; @@ -61,7 +60,8 @@ stdenv.mkDerivation rec { "USE_SYSTEM_LIB_FLAC=1" "USE_SYSTEM_LIB_GLM=1" "USE_SYSTEM_LIB_JPEG=1" - "USE_SYSTEM_LIB_LUA=1" + # https://www.mamedev.org/?p=523 + # "USE_SYSTEM_LIB_LUA=1" "USE_SYSTEM_LIB_PORTAUDIO=1" "USE_SYSTEM_LIB_PORTMIDI=1" "USE_SYSTEM_LIB_PUGIXML=1" @@ -78,7 +78,6 @@ stdenv.mkDerivation rec { expat zlib flac - lua5_3 portmidi portaudio utf8proc @@ -117,10 +116,6 @@ stdenv.mkDerivation rec { --subst-var-by mamePath "$out/opt/mame" ''; - env.NIX_CFLAGS_COMPILE = toString [ - "-Wno-error=use-after-free" - ]; - desktopItems = [ (makeDesktopItem { name = "MAME"; diff --git a/pkgs/applications/emulators/wibo/default.nix b/pkgs/applications/emulators/wibo/default.nix index 54a544fc60040..102fd324cc29c 100644 --- a/pkgs/applications/emulators/wibo/default.nix +++ b/pkgs/applications/emulators/wibo/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "wibo"; - version = "0.3.0"; + version = "0.4.2"; src = fetchFromGitHub { owner = "decompals"; repo = "wibo"; rev = version; - hash = "sha256-J5h/RpF+twb5fBjSDQMVB5SoTWWs8VD/EUuikuj73YA="; + hash = "sha256-oq/i0Hb2y5pwDEvaqSyC4+6LH1oUbvDZ/62l+V3S7Uk="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/emulators/yuzu/sources.nix b/pkgs/applications/emulators/yuzu/sources.nix index 96a1039266aa4..2f9b70b407670 100644 --- a/pkgs/applications/emulators/yuzu/sources.nix +++ b/pkgs/applications/emulators/yuzu/sources.nix @@ -1,19 +1,19 @@ # Generated by ./update.sh - do not update manually! -# Last updated: 2023-05-18 +# Last updated: 2023-05-30 { compatList = { - rev = "5f812033d64da3b70973463b8b160b7fa8aff61d"; + rev = "a6be5914e4e5891aafdd5dd55e84649b893cbeac"; hash = "sha256:1hdsza3wf9a0yvj6h55gsl7xqvhafvbz1i8paz9kg7l49b0gnlh1"; }; mainline = { - version = "1437"; - hash = "sha256:1yhr4kh4dq78cx2r655xrzb1mr7s85vcmwy731rng8q7v6w8j76p"; + version = "1452"; + hash = "sha256:1dmk0asrhvkd3cnng4bw294shcy9j3dd4kcsycam2vdvr08v5yb8"; }; ea = { - version = "3596"; - distHash = "sha256:0wi0rk7i7xdh52sawr52pkzhq2k63alk1xan1pkwgy5ybcqymr78"; - fullHash = "sha256:1x374y17hniada2hbs04295crb0wxxvl9lmy3h9cwwbx1jjax8y8"; + version = "3621"; + distHash = "sha256:0p8rxpwn9f269008skj7dy6qinpax93jhp33769akrprbh7f22if"; + fullHash = "sha256:1ph8frqifk42ypa0fw604k1z4kjisl35cai830cg4zhvd0vv7rn5"; }; } diff --git a/pkgs/applications/file-managers/browsr/default.nix b/pkgs/applications/file-managers/browsr/default.nix new file mode 100644 index 0000000000000..58342979fcb91 --- /dev/null +++ b/pkgs/applications/file-managers/browsr/default.nix @@ -0,0 +1,85 @@ +{ lib +, python3 +, fetchFromGitHub +, extras ? [ "all" ] +}: + +python3.pkgs.buildPythonApplication rec { + pname = "browsr"; + version = "1.10.7"; + format = "pyproject"; + + src = fetchFromGitHub { + owner = "juftin"; + repo = "browsr"; + rev = "v${version}"; + hash = "sha256-AT5cFQ4CldlHv3MQYAGXdZVB3bNAAvbJeosdxZjcPBM="; + }; + + nativeBuildInputs = with python3.pkgs; [ + hatchling + pythonRelaxDepsHook + pytestCheckHook + ]; + + propagatedBuildInputs = with python3.pkgs; [ + art + click + fsspec + pandas + pillow + pymupdf + rich + rich-click + rich-pixels + textual + universal-pathlib + ] ++ lib.attrVals extras passthru.optional-dependencies; + + passthru.optional-dependencies = with python3.pkgs; { + all = [ + adlfs + aiohttp + gcsfs + paramiko + pyarrow + requests + s3fs + ]; + parquet = [ + pyarrow + ]; + remote = [ + adlfs + aiohttp + gcsfs + paramiko + requests + s3fs + ]; + }; + + pythonRelaxDeps = [ + "fsspec" + "pymupdf" + "rich-click" + "textual" + ]; + + pythonImportsCheck = [ "browsr" ]; + + # requires internet access + disabledTests = [ + "test_github_screenshot" + "test_github_screenshot_license" + "test_textual_app_context_path_github" + ]; + + meta = with lib; { + description = "A file explorer in your terminal"; + homepage = "https://github.com/juftin/browsr"; + changelog = "https://github.com/fsspec/universal_pathlib/releases/tag/${src.rev}"; + license = licenses.mit; + maintainers = with maintainers; [ figsoda ]; + }; +} diff --git a/pkgs/applications/file-managers/xplorer/default.nix b/pkgs/applications/file-managers/xplorer/default.nix index df39f4cad95ef..0e82fbfa655b4 100644 --- a/pkgs/applications/file-managers/xplorer/default.nix +++ b/pkgs/applications/file-managers/xplorer/default.nix @@ -73,8 +73,8 @@ rustPlatform.buildRustPackage { substituteInPlace tauri.conf.json --replace '"distDir": "../out/src",' '"distDir": "frontend-build/src",' ''; - buildInputs = [ dbus openssl freetype libsoup gtk3 webkitgtk cmake ]; - nativeBuildInputs = [ pkg-config ]; + nativeBuildInputs = [ cmake pkg-config ]; + buildInputs = [ dbus openssl freetype libsoup gtk3 webkitgtk ]; checkFlags = [ # tries to mutate the parent directory diff --git a/pkgs/applications/finance/denaro/default.nix b/pkgs/applications/finance/denaro/default.nix index 84a76e21f2b5e..ee36127106d9f 100644 --- a/pkgs/applications/finance/denaro/default.nix +++ b/pkgs/applications/finance/denaro/default.nix @@ -2,7 +2,6 @@ , stdenvNoCC , buildDotnetModule , fetchFromGitHub -, fetchpatch , dotnetCorePackages , gtk4 , libadwaita @@ -10,20 +9,19 @@ , wrapGAppsHook4 , glib , shared-mime-info -, python3 -, desktop-file-utils , gdk-pixbuf +, blueprint-compiler }: buildDotnetModule rec { pname = "denaro"; - version = "2023.2.2"; + version = "2023.5.0"; src = fetchFromGitHub { - owner = "nlogozzo"; - repo = "NickvisionMoney"; + owner = "NickvisionApps"; + repo = "Denaro"; rev = version; - hash = "sha256-B84uzJ+B7kGU+O2tuObrIFCvgUfszLd1VU7F5tL90bU="; + hash = "sha256-kYN4Qm4xxOUkMi3twyVkT9PBnauDp7aenYy0YXzwKNA="; }; dotnet-sdk = dotnetCorePackages.sdk_7_0; @@ -42,15 +40,19 @@ buildDotnetModule rec { wrapGAppsHook4 glib # For glib-compile-resources shared-mime-info # For update-mime-database - python3 - desktop-file-utils gdk-pixbuf # Fixes icon missing in envs where GDK_PIXBUF_MODULE_FILE is not set + blueprint-compiler ]; + buildInputs = [ gtk4 libadwaita ]; # Used by blueprint-compiler + + # Denaro switches installation tool frequently (bash -> just -> cake) + # For maintainability, let's do it ourselves postInstall = '' - sh NickvisionMoney.GNOME/install_extras.sh $out - desktop-file-edit $out/share/applications/org.nickvision.money.desktop \ - --set-key=Exec --set-value=$out/bin/NickvisionMoney.GNOME + substituteInPlace NickvisionMoney.Shared/org.nickvision.money.desktop.in --replace '@EXEC@' "NickvisionMoney.GNOME" + install -Dm444 NickvisionMoney.Shared/Resources/org.nickvision.money.svg -t $out/share/icons/hicolor/scalable/apps/ + install -Dm444 NickvisionMoney.Shared/Resources/org.nickvision.money-symbolic.svg -t $out/share/icons/hicolor/symbolic/apps/ + install -Dm444 NickvisionMoney.Shared/org.nickvision.money.desktop.in -T $out/share/applications/org.nickvision.money.desktop ''; runtimeDeps = [ @@ -59,6 +61,8 @@ buildDotnetModule rec { glib # Fixes "Could not retrieve parent type - is the typeid valid?" ]; + passthru.updateScript = ./update.sh; + meta = with lib; { description = "Personal finance manager for GNOME"; homepage = "https://github.com/nlogozzo/NickvisionMoney"; diff --git a/pkgs/applications/finance/denaro/deps.nix b/pkgs/applications/finance/denaro/deps.nix index d6762f6bbe7af..8418edf10c570 100644 --- a/pkgs/applications/finance/denaro/deps.nix +++ b/pkgs/applications/finance/denaro/deps.nix @@ -2,6 +2,7 @@ # Please dont edit it manually, your changes might get overwritten! { fetchNuGet }: [ + (fetchNuGet { pname = "Cake.Tool"; version = "3.0.0"; sha256 = "0gjacqdgnh1d40sm9vrdb8vr6jv3vyh6j265gj1aaf9af2569637"; }) (fetchNuGet { pname = "Docnet.Core"; version = "2.3.1"; sha256 = "03b39x0vlymdknwgwhsmnpw4gj3njmbl9pd57ls3rhfn9r832d44"; }) (fetchNuGet { pname = "GirCore.Adw-1"; version = "0.3.0"; sha256 = "1bsjqxck58dff9hnw21cp3xk1afly8721sfsbnxcr5i39hlrbl37"; }) (fetchNuGet { pname = "GirCore.Cairo-1.0"; version = "0.3.0"; sha256 = "1zb8ilgywpwgjrzrbdvzvy70f46fb05iy49592mkjg2lv24q5l3y"; }) @@ -21,14 +22,15 @@ (fetchNuGet { pname = "HarfBuzzSharp.NativeAssets.macOS"; version = "2.8.2.3"; sha256 = "052d8frpkj4ijs6fm6xp55xbv95b1s9biqwa0w8zp3rgm88m9236"; }) (fetchNuGet { pname = "HarfBuzzSharp.NativeAssets.Win32"; version = "2.8.2.3"; sha256 = "08khd2jqm8sw58ljz5srangzfm2sz3gd2q1jzc5fr80lj8rv6r74"; }) (fetchNuGet { pname = "Hazzik.Qif"; version = "1.0.3"; sha256 = "16v6cfy3pa0qy699v843pss3418rvq5agz6n43sikzh69vzl2azy"; }) - (fetchNuGet { pname = "Microsoft.Data.Sqlite.Core"; version = "7.0.3"; sha256 = "00rdsirs32vlqpa1hri3f1m368b05d4r0k95wv5n2y0xi5i8lml6"; }) + (fetchNuGet { pname = "Microsoft.Data.Sqlite.Core"; version = "7.0.5"; sha256 = "11gkdlf2apnzvwfd7bxdhjvb4qd0p2ridp4rrz44f7h76x1sb0gk"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "5.0.0"; sha256 = "0mwpwdflidzgzfx2dlpkvvnkgkr2ayaf0s80737h4wa35gaj11rc"; }) (fetchNuGet { pname = "Microsoft.NETCore.Targets"; version = "5.0.0"; sha256 = "0z3qyv7qal5irvabc8lmkh58zsl42mrzd1i0sssvzhv4q4kl3cg6"; }) (fetchNuGet { pname = "Microsoft.Win32.Primitives"; version = "4.3.0"; sha256 = "0j0c1wj4ndj21zsgivsc24whiya605603kxrbiw6wkfdync464wq"; }) (fetchNuGet { pname = "NETStandard.Library"; version = "1.6.1"; sha256 = "1z70wvsx2d847a2cjfii7b83pjfs34q05gb037fdjikv5kbagml8"; }) (fetchNuGet { pname = "OfxSharp.NetStandard"; version = "1.0.0"; sha256 = "1v7yw2glyywb4s0y5fw306bzh2vw175bswrhi5crvd92wf93makj"; }) - (fetchNuGet { pname = "QuestPDF"; version = "2022.12.1"; sha256 = "0nbbk43jr73f0pfgdx3fzn57mjba34sir5jzxk2rscyfljfw002x"; }) + (fetchNuGet { pname = "PdfSharpCore"; version = "1.3.56"; sha256 = "0a01b2a14gygh25rq3509rky85331l8808q052br2fzidhb2vc10"; }) + (fetchNuGet { pname = "QuestPDF"; version = "2023.5.1"; sha256 = "1yfjwb7aj975aars7mcp1dxvarxl8aq122bndpw808b4cx3058gl"; }) (fetchNuGet { pname = "ReadSharp.Ports.SgmlReader.Core"; version = "1.0.0"; sha256 = "0pcvlh0gq513vw6y12lfn90a0br56a6f26lvppcj4qb839zmh3id"; }) (fetchNuGet { pname = "runtime.debian.8-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "16rnxzpk5dpbbl1x354yrlsbvwylrq456xzpsha1n9y3glnhyx9d"; }) (fetchNuGet { pname = "runtime.fedora.23-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "0hkg03sgm2wyq8nqk6dbm9jh5vcq57ry42lkqdmfklrw89lsmr59"; }) @@ -46,16 +48,19 @@ (fetchNuGet { pname = "runtime.ubuntu.14.04-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "160p68l2c7cqmyqjwxydcvgw7lvl1cr0znkw8fp24d1by9mqc8p3"; }) (fetchNuGet { pname = "runtime.ubuntu.16.04-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "15zrc8fgd8zx28hdghcj5f5i34wf3l6bq5177075m2bc2j34jrqy"; }) (fetchNuGet { pname = "runtime.ubuntu.16.10-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "1p4dgxax6p7rlgj4q73k73rslcnz4wdcv8q2flg1s8ygwcm58ld5"; }) + (fetchNuGet { pname = "SharpZipLib"; version = "1.3.3"; sha256 = "1gij11wfj1mqm10631cjpnhzw882bnzx699jzwhdqakxm1610q8x"; }) + (fetchNuGet { pname = "SixLabors.Fonts"; version = "1.0.0-beta17"; sha256 = "1qm8q82wzj54nbv63kx3ybln51k47sl18hia3jnzk1zrb6wdsw9a"; }) (fetchNuGet { pname = "SixLabors.ImageSharp"; version = "2.1.3"; sha256 = "12qb0r7v2v91vw8q8ygr67y527gwhbas6d6zdvrv4ksxwjx9dzp9"; }) (fetchNuGet { pname = "SkiaSharp"; version = "2.88.3"; sha256 = "1yq694myq2rhfp2hwwpyzcg1pzpxcp7j72wib8p9pw9dfj7008sv"; }) (fetchNuGet { pname = "SkiaSharp.HarfBuzz"; version = "2.88.3"; sha256 = "0axz2zfyg0h3zis7rr86ikrm2jbxxy0gqb3bbawpgynf1k0fsi6a"; }) (fetchNuGet { pname = "SkiaSharp.NativeAssets.Linux"; version = "2.88.3"; sha256 = "0dajvr60nwvnv7s6kcqgw1w97zxdpz1c5lb7kcq7r0hi0l05ck3q"; }) (fetchNuGet { pname = "SkiaSharp.NativeAssets.macOS"; version = "2.88.3"; sha256 = "191ajgi6fnfqcvqvkayjsxasiz6l0bv3pps8vv9abbyc4b12qvph"; }) (fetchNuGet { pname = "SkiaSharp.NativeAssets.Win32"; version = "2.88.3"; sha256 = "03wwfbarsxjnk70qhqyd1dw65098dncqk2m0vksx92j70i7lry6q"; }) - (fetchNuGet { pname = "SQLitePCLRaw.bundle_e_sqlcipher"; version = "2.1.4"; sha256 = "1v9wly6v2bj244wch6ijfx2imrbgmafn1w9km44718fngdxfhysq"; }) + (fetchNuGet { pname = "SQLitePCLRaw.bundle_e_sqlcipher"; version = "2.1.5"; sha256 = "0xnzpkhm9z09yay76wxgn4j8js260pansx8r10lrksxv2b4b0n4x"; }) (fetchNuGet { pname = "SQLitePCLRaw.core"; version = "2.1.4"; sha256 = "09akxz92qipr1cj8mk2hw99i0b81wwbwx26gpk21471zh543f8ld"; }) - (fetchNuGet { pname = "SQLitePCLRaw.lib.e_sqlcipher"; version = "2.1.4"; sha256 = "14qr84h88jfvy263yx51zjm059aqgwlvgi6g02yxhbr2m7brs4mm"; }) - (fetchNuGet { pname = "SQLitePCLRaw.provider.e_sqlcipher"; version = "2.1.4"; sha256 = "1s1dv1qfgjsvcdbwf2pl48c6k60hkxwyy6z5w8g32fypksnvb7cs"; }) + (fetchNuGet { pname = "SQLitePCLRaw.core"; version = "2.1.5"; sha256 = "03181hahmxv8jlaikx0nkzfc2q1l1cdp3chgx5q6780nhqyjkhhx"; }) + (fetchNuGet { pname = "SQLitePCLRaw.lib.e_sqlcipher"; version = "2.1.5"; sha256 = "1chij7jlpi2mdm55chrkn8bmlda5qb3q6idkljgc3rz26n6c2l5b"; }) + (fetchNuGet { pname = "SQLitePCLRaw.provider.e_sqlcipher"; version = "2.1.5"; sha256 = "11xah1nfzryh52zfwhlvfm2ra7d3an5ygff2brylp75wa685gm7g"; }) (fetchNuGet { pname = "System.AppContext"; version = "4.3.0"; sha256 = "1649qvy3dar900z3g817h17nl8jp4ka5vcfmsr05kh0fshn7j3ya"; }) (fetchNuGet { pname = "System.Buffers"; version = "4.3.0"; sha256 = "0fgns20ispwrfqll4q1zc1waqcmylb3zc50ys9x8zlwxh9pmd9jy"; }) (fetchNuGet { pname = "System.Collections"; version = "4.3.0"; sha256 = "19r4y64dqyrq6k4706dnyhhw7fs24kpp3awak7whzss39dakpxk9"; }) diff --git a/pkgs/applications/finance/denaro/update.sh b/pkgs/applications/finance/denaro/update.sh new file mode 100755 index 0000000000000..545cbf1e827aa --- /dev/null +++ b/pkgs/applications/finance/denaro/update.sh @@ -0,0 +1,18 @@ +#!/usr/bin/env nix-shell +#!nix-shell -I nixpkgs=./. -i bash -p curl jq common-updater-scripts +#shellcheck shell=bash + +set -eu -o pipefail + +version=$(curl -s ${GITHUB_TOKEN:+-u ":$GITHUB_TOKEN"} \ + https://api.github.com/repos/NickvisionApps/Denaro/releases/latest | jq -e -r .tag_name) +old_version=$(nix-instantiate --eval -A denaro.version | jq -e -r) + +if [[ $version == "$old_version" ]]; then + echo "New version same as old version, nothing to do." >&2 + exit 0 +fi + +update-source-version denaro "$version" + +$(nix-build -A denaro.fetch-deps --no-out-link) "$(dirname -- "${BASH_SOURCE[0]}")/deps.nix" diff --git a/pkgs/applications/gis/grass/default.nix b/pkgs/applications/gis/grass/default.nix index bffbcf48fabda..452ee11827cbf 100644 --- a/pkgs/applications/gis/grass/default.nix +++ b/pkgs/applications/gis/grass/default.nix @@ -6,24 +6,33 @@ stdenv.mkDerivation rec { pname = "grass"; - version = "8.2.0"; + version = "8.2.1"; src = with lib; fetchFromGitHub { owner = "OSGeo"; repo = "grass"; rev = version; - sha256 = "sha256-VK9FCqIwHGmeJe5lk12lpAGcsC1aPRBiI+XjACXjDd4="; + hash = "sha256-U3PQd3u9i+9Bc7BSd0gK8Ss+iV9BT1xLBDrKydtl3Qk="; }; nativeBuildInputs = [ pkg-config bison flex makeWrapper wrapGAppsHook - gdal geos libmysqlclient netcdf pdal + gdal # for `gdal-config` + geos # for `geos-config` + netcdf # for `nc-config` + libmysqlclient # for `mysql_config` + pdal # for `pdal-config`; remove with next version, see https://github.com/OSGeo/grass/pull/2851 ] ++ (with python3Packages; [ python-dateutil numpy wxPython_4_2 ]); buildInputs = [ cairo zlib proj libtiff libpng fftw sqlite readline ffmpeg postgresql blas wxGTK32 proj-datumgrid zstd + gdal + geos + netcdf + libmysqlclient + pdal ] ++ lib.optionals stdenv.isDarwin [ libiconv ]; strictDeps = true; diff --git a/pkgs/applications/gis/qgis/unwrapped-ltr.nix b/pkgs/applications/gis/qgis/unwrapped-ltr.nix index ecce1cfdccea1..f959389d9eee0 100644 --- a/pkgs/applications/gis/qgis/unwrapped-ltr.nix +++ b/pkgs/applications/gis/qgis/unwrapped-ltr.nix @@ -73,14 +73,14 @@ let six ]; in mkDerivation rec { - version = "3.28.5"; + version = "3.28.7"; pname = "qgis-ltr-unwrapped"; src = fetchFromGitHub { owner = "qgis"; repo = "QGIS"; rev = "final-${lib.replaceStrings [ "." ] [ "_" ] version}"; - hash = "sha256-3fQB0oCIZSVEVMZzmeyvw8/Ew+JjzAFnTIsnsklAayI="; + hash = "sha256-RWQ3RlE8fPMuDGosxKNVgbjRTigZRolqNyaJoC1xdec="; }; passthru = { diff --git a/pkgs/applications/graphics/ImageMagick/default.nix b/pkgs/applications/graphics/ImageMagick/default.nix index 74d39ee420c0d..abad3927b2dc4 100644 --- a/pkgs/applications/graphics/ImageMagick/default.nix +++ b/pkgs/applications/graphics/ImageMagick/default.nix @@ -47,13 +47,13 @@ in stdenv.mkDerivation (finalAttrs: { pname = "imagemagick"; - version = "7.1.1-10"; + version = "7.1.1-11"; src = fetchFromGitHub { owner = "ImageMagick"; repo = "ImageMagick"; rev = finalAttrs.version; - hash = "sha256-W7s/j4R4C22hYVhye8TjDYHtDq/1Q4GGu/9lxyjk6sA="; + hash = "sha256-/CZRnNy/p87sEcH94RkRYgYXexFSU0Bm809pcvDFdV4="; }; outputs = [ "out" "dev" "doc" ]; # bin/ isn't really big diff --git a/pkgs/applications/graphics/halftone/default.nix b/pkgs/applications/graphics/halftone/default.nix new file mode 100644 index 0000000000000..a2106049ef04f --- /dev/null +++ b/pkgs/applications/graphics/halftone/default.nix @@ -0,0 +1,61 @@ +{ lib +, fetchFromGitHub +, wrapGAppsHook4 +, meson +, ninja +, pkg-config +, appstream-glib +, desktop-file-utils +, gobject-introspection +, glib +, blueprint-compiler +, libadwaita +, python3Packages +}: + +python3Packages.buildPythonApplication rec { + pname = "halftone"; + version = "0.2.1"; + + src = fetchFromGitHub { + owner = "tfuxu"; + repo = pname; + rev = version; + hash = "sha256-EYxnGpVKPV3Xg6dH3m1aC3/pDigUxkNF7C8U16n8al8="; + }; + + format = "other"; + dontWrapGApps = true; + + nativeBuildInputs = [ + appstream-glib + blueprint-compiler + desktop-file-utils + meson + ninja + pkg-config + wrapGAppsHook4 + glib + gobject-introspection + ]; + + buildInputs = [ + libadwaita + ]; + + propagatedBuildInputs = with python3Packages; [ + pygobject3 + wand + ]; + + preFixup = '' + makeWrapperArgs+=("''${gappsWrapperArgs[@]}") + ''; + + meta = with lib; { + homepage = "https://github.com/tfuxu/halftone"; + description = "Simple app for giving images that pixel-art style"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ foo-dogsquared ]; + }; +} diff --git a/pkgs/applications/graphics/ipe/default.nix b/pkgs/applications/graphics/ipe/default.nix index c30bef90f3d1a..01f17bb41b956 100644 --- a/pkgs/applications/graphics/ipe/default.nix +++ b/pkgs/applications/graphics/ipe/default.nix @@ -55,7 +55,7 @@ stdenv.mkDerivation rec { "IPE_NO_SPELLCHECK=1" # qtSpell is not yet packaged ]; - qtWrapperArgs = lib.optional withTeXLive [ "--prefix PATH : ${lib.makeBinPath [ texlive ]}" ]; + qtWrapperArgs = lib.optionals withTeXLive [ "--prefix PATH : ${lib.makeBinPath [ texlive ]}" ]; enableParallelBuilding = true; diff --git a/pkgs/applications/misc/1password-gui/default.nix b/pkgs/applications/misc/1password-gui/default.nix index 235bb96727222..9f93abb8478a1 100644 --- a/pkgs/applications/misc/1password-gui/default.nix +++ b/pkgs/applications/misc/1password-gui/default.nix @@ -9,43 +9,43 @@ let pname = "1password"; - version = if channel == "stable" then "8.10.6" else "8.10.7-11.BETA"; + version = if channel == "stable" then "8.10.7" else "8.10.8-10.BETA"; sources = { stable = { x86_64-linux = { url = "https://downloads.1password.com/linux/tar/stable/x86_64/1password-${version}.x64.tar.gz"; - sha256 = "sha256-wCY94x67z+X8l3wr79+BXuu6/UXJldbVIA67AAD9mj0="; + sha256 = "sha256-5KMAzstoPmNgFejp21R8PcdrmUtkX3qxHYX3rV5JqyE="; }; aarch64-linux = { url = "https://downloads.1password.com/linux/tar/stable/aarch64/1password-${version}.arm64.tar.gz"; - sha256 = "sha256-iLjuudWmkLMuoZSZZo9pRpx0MZludUrGTpTHCTNk4Vo="; + sha256 = "sha256-Tmof+ma1SJMQRSV1T5flLeXfe6W1a2U2mYzi+MrxvJM="; }; x86_64-darwin = { url = "https://downloads.1password.com/mac/1Password-${version}-x86_64.zip"; - sha256 = "sha256-FVj5x1RVBxPsgWhG6R4ykarZdLdJcj6gO5mQy3hHB4M="; + sha256 = "sha256-jtqgJJy1ZhyaEUEafT1ywD529aKGDqc0J3mgYSGVTWU="; }; aarch64-darwin = { url = "https://downloads.1password.com/mac/1Password-${version}-aarch64.zip"; - sha256 = "sha256-ilQP1OF4gydzlLZq3aZzqNbzvacRbruzWS7pVt6DP9g="; + sha256 = "sha256-qLqK6CZcqDfIGX0FzEnAZP3Rkxw8CNtT6sFy8u0IqwM="; }; }; beta = { x86_64-linux = { url = "https://downloads.1password.com/linux/tar/beta/x86_64/1password-${version}.x64.tar.gz"; - sha256 = "sha256-O7dzNRukIk654FoS1HxqHYcB8mLNORvz59p3skRXuYM="; + sha256 = "sha256-ngxNVYTVA5KyD1kh5oxClWxj9Kox8Yp4L+ryqxQHh3I="; }; aarch64-linux = { url = "https://downloads.1password.com/linux/tar/beta/aarch64/1password-${version}.arm64.tar.gz"; - sha256 = "sha256-npEVlGwMmYXH4wW6VvAhPzWNFOZl1LvuCnOgvm94rds="; + sha256 = "sha256-5f0GXROQ+NCE25nbrY4MsE76AETNleiVBxpSlvVes5k="; }; x86_64-darwin = { url = "https://downloads.1password.com/mac/1Password-${version}-x86_64.zip"; - sha256 = "sha256-Z0IZNEU8ggSF20SZziT5UTEMiWPNdVWY82nhuGyeFVU="; + sha256 = "sha256-JrTs8wCnCqNtKfKNTjEDadVbwZ5Lolz7ggYR7sIpFEU="; }; aarch64-darwin = { url = "https://downloads.1password.com/mac/1Password-${version}-aarch64.zip"; - sha256 = "sha256-qy1Vr6nDJo44Qd7mKZYR65+tIaSq0YOjjw84/mg1RgE="; + sha256 = "sha256-RTnaxYt9rEbGcr827cYNiF1g+a485TThpSADW9tTcPE="; }; }; }; diff --git a/pkgs/applications/misc/audio/soxr/default.nix b/pkgs/applications/misc/audio/soxr/default.nix index 45a5227404ce4..604057ba65cbd 100644 --- a/pkgs/applications/misc/audio/soxr/default.nix +++ b/pkgs/applications/misc/audio/soxr/default.nix @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { ./arm64-check.patch ]; - outputs = [ "out" "doc" ]; # headers are just two and very small + outputs = [ "out" "dev" "doc" ]; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/misc/calibre/default.nix b/pkgs/applications/misc/calibre/default.nix index 93b513af20301..4d9253087e677 100644 --- a/pkgs/applications/misc/calibre/default.nix +++ b/pkgs/applications/misc/calibre/default.nix @@ -32,11 +32,11 @@ stdenv.mkDerivation (finalAttrs: { pname = "calibre"; - version = "6.17.0"; + version = "6.19.1"; src = fetchurl { url = "https://download.calibre-ebook.com/${finalAttrs.version}/calibre-${finalAttrs.version}.tar.xz"; - hash = "sha256-HKSruKXYUMH1lj43CA3Rp3lXNlONXE1P9gFLaH16No4="; + hash = "sha256-Fm2484ztsSc80waJBvy7rHGnNBFxCvbbrsHDBCZ2kxA="; }; # https://sources.debian.org/patches/calibre/${finalAttrs.version}+dfsg-1 @@ -49,8 +49,8 @@ stdenv.mkDerivation (finalAttrs: { }) (fetchpatch { name = "0007-Hardening-Qt-code.patch"; - url = "https://raw.githubusercontent.com/debian-calibre/calibre/debian/${finalAttrs.version}-1/debian/patches/0007-Hardening-Qt-code.patch"; - hash = "sha256-9P1kGrQbWAWDzu5EUiQr7TiCPHRWUA8hxPpEvFpK20k="; + url = "https://raw.githubusercontent.com/debian-calibre/calibre/debian/${finalAttrs.version}-1/debian/patches/hardening/0007-Hardening-Qt-code.patch"; + hash = "sha256-WBm0dWDXoPT6alEdK5dVMrVTOxG7Z8bq1s0iO2HTy/Q="; }) ] ++ lib.optional (!unrarSupport) ./dont_build_unrar_plugin.patch; diff --git a/pkgs/applications/misc/cobalt/default.nix b/pkgs/applications/misc/cobalt/default.nix index 0be88332e7b08..cda685c971dc4 100644 --- a/pkgs/applications/misc/cobalt/default.nix +++ b/pkgs/applications/misc/cobalt/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "cobalt"; - version = "0.18.4"; + version = "0.18.5"; src = fetchFromGitHub { owner = "cobalt-org"; repo = "cobalt.rs"; rev = "v${version}"; - sha256 = "sha256-O7qFpp7Xr6K82o/KUMP0J5y2B32op+QBGUXo9Q5R5LQ="; + sha256 = "sha256-Y1rWKoh4cjLOvBJy4bXIHsvGtLmTu9n0aqf6PdflH6E="; }; - cargoHash = "sha256-ZBAF4BqQ+JMZ3Rpg2RxUhhVvPE5pN68qljVl0o2/VNA="; + cargoHash = "sha256-r0nxsDcdXNiZn9dVMTOAxlI/kd0nZFh7JvB2JYDR2aw="; buildInputs = lib.optionals stdenv.isDarwin [ CoreServices ]; diff --git a/pkgs/applications/misc/comodoro/default.nix b/pkgs/applications/misc/comodoro/default.nix new file mode 100644 index 0000000000000..c036b2aa2c7d0 --- /dev/null +++ b/pkgs/applications/misc/comodoro/default.nix @@ -0,0 +1,47 @@ +{ lib +, rustPlatform +, fetchFromGitHub +, stdenv +, installShellFiles +, installShellCompletions ? stdenv.hostPlatform == stdenv.buildPlatform +, installManPages ? stdenv.hostPlatform == stdenv.buildPlatform +, withTcp ? true +}: + +rustPlatform.buildRustPackage rec { + pname = "comodoro"; + version = "0.0.8"; + + src = fetchFromGitHub { + owner = "soywod"; + repo = "comodoro"; + rev = "v${version}"; + sha256 = "rGnVXyfWJkPHfpf1gRGbDJ6Y1ycKOOcCZ+Jx35fUo6M="; + }; + + cargoSha256 = "jpshuavywCLN03xD/gFgQeGbKtmHq5pULbxd+RUbaDk="; + + nativeBuildInputs = lib.optional (installManPages || installShellCompletions) installShellFiles; + + buildNoDefaultFeatures = true; + buildFeatures = lib.optional withTcp "tcp"; + + postInstall = lib.optionalString installManPages '' + mkdir -p $out/man + $out/bin/comodoro man $out/man + installManPage $out/man/* + '' + lib.optionalString installShellCompletions '' + installShellCompletion --cmd comodoro \ + --bash <($out/bin/comodoro completion bash) \ + --fish <($out/bin/comodoro completion fish) \ + --zsh <($out/bin/comodoro completion zsh) + ''; + + meta = with lib; { + description = "CLI to manage your time."; + homepage = "https://pimalaya.org/comodoro/"; + changelog = "https://github.com/soywod/comodoro/blob/v${version}/CHANGELOG.md"; + license = licenses.mit; + maintainers = with maintainers; [ soywod ]; + }; +} diff --git a/pkgs/applications/misc/dasel/default.nix b/pkgs/applications/misc/dasel/default.nix index fdc29f23bb514..7dfe56f54483f 100644 --- a/pkgs/applications/misc/dasel/default.nix +++ b/pkgs/applications/misc/dasel/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "dasel"; - version = "2.2.0"; + version = "2.3.4"; src = fetchFromGitHub { owner = "TomWright"; repo = "dasel"; rev = "v${version}"; - sha256 = "sha256-DPfahZIb6Cp+E5GxIqNW+IruDZWBvJTRc7gxQOfeJqA="; + sha256 = "sha256-/1CTtRTLgMlmFeubq3ebGnA9Do1mW6TtAXsCwi1JFmk="; }; - vendorHash = "sha256-+3RcjOZjmYu4eNpgczwY4Uyz1+poYA/TXc2Mb+VwRKc="; + vendorHash = "sha256-cLf0MzEAykmtnPjT2vGOSPwIXJP6BhxheUaicT7o/X4="; ldflags = [ "-s" "-w" "-X github.com/tomwright/dasel/v2/internal.Version=${version}" diff --git a/pkgs/applications/misc/far2l/default.nix b/pkgs/applications/misc/far2l/default.nix index 2a23aac79f82c..ee17568c0118c 100644 --- a/pkgs/applications/misc/far2l/default.nix +++ b/pkgs/applications/misc/far2l/default.nix @@ -1,6 +1,6 @@ { lib, stdenv, fetchFromGitHub, makeWrapper, cmake, ninja, pkg-config, m4, bash , xdg-utils, zip, unzip, gzip, bzip2, gnutar, p7zip, xz -, IOKit, Carbon, Cocoa, AudioToolbox, OpenGL +, IOKit, Carbon, Cocoa, AudioToolbox, OpenGL, System , withTTYX ? true, libX11 , withGUI ? true, wxGTK32 , withUCD ? true, libuchardet @@ -35,7 +35,7 @@ stdenv.mkDerivation rec { ++ lib.optionals withNetRocks [ openssl libssh libnfs neon ] ++ lib.optional (withNetRocks && !stdenv.isDarwin) samba # broken on darwin ++ lib.optionals withPython (with python3Packages; [ python cffi debugpy pcpp ]) - ++ lib.optionals stdenv.isDarwin [ IOKit Carbon Cocoa AudioToolbox OpenGL ]; + ++ lib.optionals stdenv.isDarwin [ IOKit Carbon Cocoa AudioToolbox OpenGL System ]; postPatch = '' patchShebangs python/src/prebuild.sh @@ -43,9 +43,6 @@ stdenv.mkDerivation rec { --replace '"/bin/bash"' '"${bash}/bin/bash"' substituteInPlace far2l/src/cfg/config.cpp \ --replace '"/bin/bash"' '"${bash}/bin/bash"' - '' + lib.optionalString stdenv.isDarwin '' - substituteInPlace WinPort/src/Backend/WX/CMakeLists.txt \ - --replace "-framework System" -lSystem ''; cmakeFlags = lib.mapAttrsToList (k: v: "-D${k}=${if v then "yes" else "no"}") { diff --git a/pkgs/applications/misc/has/default.nix b/pkgs/applications/misc/has/default.nix new file mode 100644 index 0000000000000..144d8073ff0e2 --- /dev/null +++ b/pkgs/applications/misc/has/default.nix @@ -0,0 +1,29 @@ +{ lib, stdenvNoCC, fetchFromGitHub }: + +stdenvNoCC.mkDerivation (finalAttrs: rec { + pname = "has"; + version = "1.4.0"; + + src = fetchFromGitHub { + owner = "kdabir"; + repo = "has"; + rev = "v${finalAttrs.version}"; + hash = "sha256-3XsNSl4lQfJjEPNGoFj6ABXGkwOUsg9AFDAz8euZApE="; + }; + + dontBuild = true; + + installPhase = '' + runHook preInstall + install -Dm0555 ${pname} -t $out/bin + runHook postInstall + ''; + + meta = with lib; { + homepage = "https://github.com/kdabir/has"; + description = "Checks presence of various command line tools and their versions on the path"; + license = licenses.mit; + maintainers = with maintainers; [ Freed-Wu ]; + platforms = platforms.unix; + }; +}) diff --git a/pkgs/applications/misc/hugo/default.nix b/pkgs/applications/misc/hugo/default.nix index 009e6116e2e30..5523b1277dffd 100644 --- a/pkgs/applications/misc/hugo/default.nix +++ b/pkgs/applications/misc/hugo/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "hugo"; - version = "0.112.5"; + version = "0.113.0"; src = fetchFromGitHub { owner = "gohugoio"; repo = pname; rev = "v${version}"; - hash = "sha256-phtiYh5+xSc4eeK2hM6bHFg4/Owm1EkInRE+NhuQAUA="; + hash = "sha256-oKGRbgr4jaau6wfo6Q/yhYgambGa+wb3ENtk6wrb0J0="; }; - vendorHash = "sha256-A4mWrTSkE1NcLj8ozGXQJIrFMvqeoBC7y7eOTeh3ktw="; + vendorHash = "sha256-+eVaV6iGsubMt6cq0lKP0i69BlYW8jwx6lT6rwhZAoA="; doCheck = false; diff --git a/pkgs/applications/misc/joplin-desktop/default.nix b/pkgs/applications/misc/joplin-desktop/default.nix index aa148297c35fc..8cc35538a766c 100644 --- a/pkgs/applications/misc/joplin-desktop/default.nix +++ b/pkgs/applications/misc/joplin-desktop/default.nix @@ -2,7 +2,7 @@ let pname = "joplin-desktop"; - version = "2.10.18"; + version = "2.10.19"; name = "${pname}-${version}"; inherit (stdenv.hostPlatform) system; @@ -16,8 +16,8 @@ let src = fetchurl { url = "https://github.com/laurent22/joplin/releases/download/v${version}/Joplin-${version}.${suffix}"; sha256 = { - x86_64-linux = "sha256-oo3li8w1uem9lyFqwnrZ7Fl1R7Hrd8W+PHcIiaL2/+U="; - x86_64-darwin = "sha256-xYNp6WW8uPBrfuUgE5LI+1PuQK+vTA11eOtkz2ogpk0="; + x86_64-linux = "sha256-+QvaEB+4eA3grnqbLfFMEtNyizlvovtV/BvTa9gSZGU="; + x86_64-darwin = "sha256-BK951HLf+L1x9TDlqW11mNnnrnHfZ4qbKk25OIVXnuM="; }.${system} or throwSystem; }; @@ -36,7 +36,7 @@ let ''; homepage = "https://joplinapp.org"; license = licenses.agpl3Plus; - maintainers = with maintainers; [ hugoreeves ]; + maintainers = with maintainers; [ hugoreeves qjoly ]; platforms = [ "x86_64-linux" "x86_64-darwin" ]; }; diff --git a/pkgs/applications/misc/josm/default.nix b/pkgs/applications/misc/josm/default.nix index ff0e995d71da4..9c7c1a0e32303 100644 --- a/pkgs/applications/misc/josm/default.nix +++ b/pkgs/applications/misc/josm/default.nix @@ -3,15 +3,15 @@ }: let pname = "josm"; - version = "18721"; + version = "18746"; srcs = { jar = fetchurl { url = "https://josm.openstreetmap.de/download/josm-snapshot-${version}.jar"; - hash = "sha256-nc6itoblAzP064xTTF8q990TiRX3+zf5uk+enS+C5Jo="; + hash = "sha256-TzRs7YPpCzsgGAeaW0px2aZsUJj8yqIpoUf7RIzAsZg="; }; macosx = fetchurl { url = "https://josm.openstreetmap.de/download/macosx/josm-macos-${version}-java17.zip"; - hash = "sha256-uaj32PupxAS5Pa7us9sIeeepGJ6BIljm41e6onB7zxQ="; + hash = "sha256-4ZQ75KiQDmmswSHklnS1yX5sQ/MChYoU//i37VXh8Zo="; }; pkg = fetchsvn { url = "https://josm.openstreetmap.de/svn/trunk/native/linux/tested"; diff --git a/pkgs/applications/misc/klayout/default.nix b/pkgs/applications/misc/klayout/default.nix index 3a35a36394e8b..76cc302f358ab 100644 --- a/pkgs/applications/misc/klayout/default.nix +++ b/pkgs/applications/misc/klayout/default.nix @@ -5,13 +5,13 @@ mkDerivation rec { pname = "klayout"; - version = "0.28.7"; + version = "0.28.8"; src = fetchFromGitHub { owner = "KLayout"; repo = "klayout"; rev = "v${version}"; - hash = "sha256-CA6PNoQtg59Mo7dKIgSVeC4owVuAirJ3mFds1J9IQtI="; + hash = "sha256-xM9bAy+HurJor6v2eVPN9gvUxDkyjKRO8kv4zzv9u7o="; }; postPatch = '' diff --git a/pkgs/applications/misc/mako/default.nix b/pkgs/applications/misc/mako/default.nix index 3bd11ce68acd4..ffad5a5684fa3 100644 --- a/pkgs/applications/misc/mako/default.nix +++ b/pkgs/applications/misc/mako/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { pname = "mako"; - version = "1.7.1"; + version = "1.8.0"; src = fetchFromGitHub { owner = "emersion"; repo = pname; rev = "v${version}"; - sha256 = "sha256-/+XYf8FiH4lk7f7/pMt43hm13mRK+UqvaNOpf1TI6m4="; + sha256 = "sha256-sUFMcCrc5iNPeAmRbqDaT/n8OIlFJEwJTzY1HMx94RU="; }; depsBuildBuild = [ pkg-config ]; diff --git a/pkgs/applications/misc/mob/default.nix b/pkgs/applications/misc/mob/default.nix index 3052384399c16..c54aa5e1dd7c6 100644 --- a/pkgs/applications/misc/mob/default.nix +++ b/pkgs/applications/misc/mob/default.nix @@ -9,13 +9,13 @@ buildGoModule rec { pname = "mob"; - version = "4.4.2"; + version = "4.4.3"; src = fetchFromGitHub { owner = "remotemobprogramming"; repo = pname; rev = "v${version}"; - sha256 = "sha256-muKlzOrqtegy35QcGJvwYqIJ9XZsaAvyofsrWPqCi7k="; + sha256 = "sha256-XWXoY/e/xceO3sOGvA2hrdvbdb8nomMg7AGUW090I74="; }; vendorHash = null; diff --git a/pkgs/applications/misc/mupdf/default.nix b/pkgs/applications/misc/mupdf/default.nix index 812bc9a5d76df..c9523581b0a98 100644 --- a/pkgs/applications/misc/mupdf/default.nix +++ b/pkgs/applications/misc/mupdf/default.nix @@ -47,12 +47,12 @@ let in stdenv.mkDerivation rec { - version = "1.21.1"; + version = "1.22.1"; pname = "mupdf"; src = fetchurl { url = "https://mupdf.com/downloads/archive/${pname}-${version}-source.tar.gz"; - sha256 = "sha256-sk3b4SUGzILeCNXNSUYUugg0b4F12x2YvPk4/5SSWlQ="; + sha256 = "sha256-1i88DkVuu8QucfWkfw+M0SzsK/Co1yt541+jWmU4slo="; }; patches = [ ./0001-Use-command-v-in-favor-of-which.patch diff --git a/pkgs/applications/misc/obsidian/default.nix b/pkgs/applications/misc/obsidian/default.nix index 2ac7a692127eb..e96255271dfdd 100644 --- a/pkgs/applications/misc/obsidian/default.nix +++ b/pkgs/applications/misc/obsidian/default.nix @@ -4,7 +4,7 @@ , makeWrapper , electron , makeDesktopItem -, graphicsmagick +, imagemagick , writeScript , undmg , unzip @@ -12,7 +12,7 @@ let inherit (stdenv.hostPlatform) system; pname = "obsidian"; - version = "1.3.4"; + version = "1.3.5"; appname = "Obsidian"; meta = with lib; { description = "A powerful knowledge base that works on top of a local folder of plain text Markdown files"; @@ -25,12 +25,12 @@ let filename = if stdenv.isDarwin then "Obsidian-${version}-universal.dmg" else "obsidian-${version}.tar.gz"; src = fetchurl { url = "https://github.com/obsidianmd/obsidian-releases/releases/download/v${version}/${filename}"; - sha256 = if stdenv.isDarwin then "sha256-LP13smLy/cr0hiLl5cdRxTbDfRFojb+HJBx/MFeJ13Y=" else "sha256-8M9HU20IxTvPaa6x1X41Ldq2usK2TPU71VvprerivZg="; + sha256 = if stdenv.isDarwin then "sha256-bTIJwQqufzxq1/ZxR8rVYER82tl0pPMpKwDPr9Gz1Q4=" else "sha256-jhm6ziFaJnv4prPSfOnJ/EbIRTf9rnvzAJVxnVqmWE4="; }; icon = fetchurl { - url = "https://forum.obsidian.md/uploads/default/original/1X/bf119bd48f748f4fd2d65f2d1bb05d3c806883b5.png"; - sha256 = "18ylnbvxr6k4x44c4i1d55wxy2dq4fdppp43a4wl6h6zar0sc9s2"; + url = "https://obsidian.md/images/obsidian-logo-gradient.svg"; + sha256 = "100j8fcrc5q8zv525siapminffri83s2khs2hw4kdxwrdjwh36qi"; }; desktopItem = makeDesktopItem { @@ -46,7 +46,7 @@ let linux = stdenv.mkDerivation { inherit pname version src desktopItem icon; meta = meta // { platforms = [ "x86_64-linux" "aarch64-linux" ]; }; - nativeBuildInputs = [ makeWrapper graphicsmagick ]; + nativeBuildInputs = [ makeWrapper imagemagick ]; installPhase = '' runHook preInstall mkdir -p $out/bin @@ -59,7 +59,7 @@ let -t $out/share/applications/ for size in 16 24 32 48 64 128 256 512; do mkdir -p $out/share/icons/hicolor/"$size"x"$size"/apps - gm convert -resize "$size"x"$size" ${icon} $out/share/icons/hicolor/"$size"x"$size"/apps/obsidian.png + convert -background none -resize "$size"x"$size" ${icon} $out/share/icons/hicolor/"$size"x"$size"/apps/obsidian.png done runHook postInstall ''; diff --git a/pkgs/applications/misc/octoprint/default.nix b/pkgs/applications/misc/octoprint/default.nix index 1af2571e48a24..6c631ad3130f3 100644 --- a/pkgs/applications/misc/octoprint/default.nix +++ b/pkgs/applications/misc/octoprint/default.nix @@ -4,7 +4,6 @@ , lib , fetchFromGitHub , python3 -, fetchPypi , substituteAll , nix-update-script , nixosTests @@ -17,43 +16,6 @@ let self = py; packageOverrides = lib.foldr lib.composeExtensions (self: super: { }) ( [ - ( - # with version 3 of flask-limiter octoprint 1.8.7 fails to start with - # TypeError: Limiter.__init__() got multiple values for argument 'key_func' - self: super: { - flask-limiter = super.flask-limiter.overridePythonAttrs (oldAttrs: rec { - version = "2.6.2"; - src = fetchFromGitHub { - owner = "alisaifee"; - repo = "flask-limiter"; - rev = version; - sha256 = "sha256-eWOdJ7m3cY08ASN/X+7ILJK99iLJJwCY8294fwJiDew="; - }; - }); - flask-babel = super.flask-babel.overridePythonAttrs (oldAttrs: rec { - version = "2.0.0"; - src = fetchPypi { - pname = "Flask-Babel"; - inherit version; - sha256 = "sha256-+fr0XNsuGjLqLsFEA1h9QpUQjzUBenghorGsuM/ZJX0="; - }; - nativeBuildInputs = [ ]; - format = "setuptools"; - outputs = [ "out" ]; - patches = [ ]; - }); - # downgrade needed for flask-babel 2.0.0 - babel = super.babel.overridePythonAttrs (oldAttrs: rec { - version = "2.11.0"; - src = fetchPypi { - pname = "Babel"; - inherit version; - hash = "sha256-XvSzImsBgN7d7UIpZRyLDho6aig31FoHMnLzE+TPl/Y="; - }; - propagatedBuildInputs = [ self.pytz ]; - }); - } - ) # Built-in dependency ( self: super: { @@ -94,14 +56,14 @@ let self: super: { octoprint-pisupport = self.buildPythonPackage rec { pname = "OctoPrint-PiSupport"; - version = "2022.6.13"; + version = "2023.5.24"; format = "setuptools"; src = fetchFromGitHub { owner = "OctoPrint"; repo = "OctoPrint-PiSupport"; rev = version; - hash = "sha256-3z5Btl287W3j+L+MQG8FOWt21smML0vpmu9BP48B9A0="; + hash = "sha256-KfkZXJ2f02G2ee+J1w+YQRKz+LSWwxVIIwmdevDGhew="; }; # requires octoprint itself during tests @@ -118,13 +80,13 @@ let self: super: { octoprint = self.buildPythonPackage rec { pname = "OctoPrint"; - version = "1.8.7"; + version = "1.9.0"; src = fetchFromGitHub { owner = "OctoPrint"; repo = "OctoPrint"; rev = version; - hash = "sha256-g4PYB9YbkX0almRPgMFlb8D633Y5fc3H+Boa541suqc="; + hash = "sha256-gTWQSqgksZMxdaZ7V3hmnqXlZ+OMI86RX0lC8z1AEzI="; }; propagatedBuildInputs = with self; [ @@ -176,6 +138,8 @@ let wrapt zeroconf zipstream-ng + class-doc + pydantic ] ++ lib.optionals stdenv.isDarwin [ py.pkgs.appdirs ]; @@ -217,6 +181,7 @@ let "werkzeug" "flask" "Flask-Limiter" + "blinker" ]; in '' diff --git a/pkgs/applications/misc/octoprint/ffmpeg-path.patch b/pkgs/applications/misc/octoprint/ffmpeg-path.patch index 7ba468ae1a3f9..2e7c7dbe06428 100644 --- a/pkgs/applications/misc/octoprint/ffmpeg-path.patch +++ b/pkgs/applications/misc/octoprint/ffmpeg-path.patch @@ -1,30 +1,11 @@ -diff --git a/src/octoprint/plugins/corewizard/templates/corewizard_webcam_wizard.jinja2 b/src/octoprint/plugins/corewizard/templates/corewizard_webcam_wizard.jinja2 -index 79342dcd7..6165a4119 100644 ---- a/src/octoprint/plugins/corewizard/templates/corewizard_webcam_wizard.jinja2 -+++ b/src/octoprint/plugins/corewizard/templates/corewizard_webcam_wizard.jinja2 -@@ -29,14 +29,3 @@ - {% include "snippets/settings/webcam/webcamStreamUrl.jinja2" %} - {% include "snippets/settings/webcam/webcamSnapshotUrl.jinja2" %} - </form> -- --<h4>{{ _('Timelapse Recordings') }}</h4> -- --{% trans %}<p> -- To render the snapshots into timelapse recordings, OctoPrint also needs to -- know the correct <strong>path to FFMPEG</strong>. --</p>{% endtrans %} -- --<form class="form-horizontal" data-bind="with: settingsViewModel" onsubmit="return false;"> -- {% include "snippets/settings/webcam/ffmpegPath.jinja2" %} --</form> diff --git a/src/octoprint/server/api/settings.py b/src/octoprint/server/api/settings.py index c3e6cea10..ced2f8fa0 100644 --- a/src/octoprint/server/api/settings.py +++ b/src/octoprint/server/api/settings.py -@@ -130,7 +130,7 @@ def getSettings(): - "snapshotUrl": s.get(["webcam", "snapshot"]), +@@ -130,7 +130,7 @@ data["webcam"] = { + "webcamEnabled": s.getBoolean(["webcam", "webcamEnabled"]), "snapshotTimeout": s.getInt(["webcam", "snapshotTimeout"]), - "snapshotSslValidation": s.getBoolean(["webcam", "snapshotSslValidation"]), + "timelapseEnabled": s.getBoolean(["webcam", "timelapseEnabled"]), - "ffmpegPath": s.get(["webcam", "ffmpeg"]), + "ffmpegPath": "@ffmpeg@", "ffmpegCommandline": s.get(["webcam", "ffmpegCommandline"]), diff --git a/pkgs/applications/misc/otpclient/default.nix b/pkgs/applications/misc/otpclient/default.nix index 6f7047de8c652..4821efa9223ba 100644 --- a/pkgs/applications/misc/otpclient/default.nix +++ b/pkgs/applications/misc/otpclient/default.nix @@ -20,21 +20,40 @@ stdenv.mkDerivation rec { pname = "otpclient"; - version = "3.1.6"; + version = "3.1.7"; src = fetchFromGitHub { owner = "paolostivanin"; repo = pname; - rev = "v${version}"; - sha256 = "sha256-v7TvdS0IlfB4oKdaEh7Z3AFJDV1bOMiX5vVD7VhIMCE="; + rev = "refs/tags/v${version}"; + hash = "sha256-TklVOUkdhWDG9GqHl0Sz9fah+Xp/M8xgSuDB1q4mljM="; }; - buildInputs = [ gtk3 jansson libgcrypt libzip libpng libcotp zbar protobuf protobufc libsecret qrencode libuuid ]; - nativeBuildInputs = [ cmake pkg-config wrapGAppsHook ]; + nativeBuildInputs = [ + cmake + pkg-config + wrapGAppsHook + ]; + + buildInputs = [ + gtk3 + jansson + libcotp + libgcrypt + libpng + libsecret + libuuid + libzip + protobuf + protobufc + qrencode + zbar + ]; meta = with lib; { description = "Highly secure and easy to use OTP client written in C/GTK that supports both TOTP and HOTP"; homepage = "https://github.com/paolostivanin/OTPClient"; + changelog = "https://github.com/paolostivanin/OTPClient/releases/tag/v${version}"; license = licenses.gpl3Only; maintainers = with maintainers; [ alexbakker ]; platforms = platforms.linux; diff --git a/pkgs/applications/misc/p2pool/default.nix b/pkgs/applications/misc/p2pool/default.nix index 4baa9b5a1d970..b8fa49899089e 100644 --- a/pkgs/applications/misc/p2pool/default.nix +++ b/pkgs/applications/misc/p2pool/default.nix @@ -19,13 +19,13 @@ let in stdenv.mkDerivation rec { pname = "p2pool"; - version = "3.3"; + version = "3.4"; src = fetchFromGitHub { owner = "SChernykh"; repo = "p2pool"; rev = "v${version}"; - sha256 = "sha256-sCG2Dr0gDznOyuSCVm/Zop+64elUZLt+XSDff2jQlwg="; + sha256 = "sha256-JtBl+ZNqBbCl8gFZy+q5PP2qoRKULA++leGsyrT3DaQ="; fetchSubmodules = true; }; diff --git a/pkgs/applications/misc/pairdrop/default.nix b/pkgs/applications/misc/pairdrop/default.nix new file mode 100644 index 0000000000000..7715481cffd59 --- /dev/null +++ b/pkgs/applications/misc/pairdrop/default.nix @@ -0,0 +1,44 @@ +{ lib +, buildNpmPackage +, fetchFromGitHub +, nodejs +}: + +buildNpmPackage rec { + pname = "pairdrop"; + version = "1.7.6"; + + src = fetchFromGitHub { + owner = "schlagmichdoch"; + repo = "PairDrop"; + rev = "v${version}"; + hash = "sha256-AOFATOCLf2KigeqoUzIfNngyeDesNrThRzxFvqtsXBs="; + }; + + npmDepsHash = "sha256-3nKjmC5eizoV/mrKDBhsSlVQxEHyIsWR6KHFwZhBugI="; + + dontNpmBuild = true; + + installPhase = '' + runHook preInstall + + mkdir -p $out/bin $out/lib + cp -r * $out/lib + + makeWrapper ${nodejs}/bin/node "$out/bin/pairdrop" --add-flags "index.js public --rate-limit --auto-restart" + wrapProgram $out/bin/pairdrop --chdir "$out/lib" + + runHook postInstall + ''; + + meta = with lib; { + description = "Local file sharing in your browser"; + longDescription = '' + PairDrop is a sublime alternative to AirDrop that works on all platforms. + Send images, documents or text via peer to peer connection to devices in the same local network/Wi-Fi or to paired devices. + ''; + homepage = "https://github.com/schlagmichdoch/PairDrop"; + license = licenses.gpl3Only; + maintainers = with maintainers; [ dit7ya ]; + }; +} diff --git a/pkgs/applications/misc/pgmanage/default.nix b/pkgs/applications/misc/pgmanage/default.nix index b892ebb2a9e08..eac927ad3b2ce 100644 --- a/pkgs/applications/misc/pgmanage/default.nix +++ b/pkgs/applications/misc/pgmanage/default.nix @@ -1,14 +1,16 @@ -{ lib, stdenv, fetchFromGitHub, postgresql, openssl } : - +{ lib, stdenv, fetchFromGitHub, postgresql, openssl, nixosTests } : stdenv.mkDerivation rec { pname = "pgmanage"; - version = "11.0.1"; + # The last release 11.0.1 from 2018 fails the NixOS test + # probably because of PostgreSQL-12 incompatibility. + # Fortunately the latest master does succeed the test. + version = "unstable-2022-05-11"; src = fetchFromGitHub { owner = "pgManage"; repo = "pgManage"; - rev = "v${version}"; - sha256 = "1a1dbc32b3y0ph8ydf800h6pz7dg6g1gxgid4gffk7k58xj0c5yf"; + rev = "a028604416be382d6d310bc68b4e7c3cd16020fb"; + sha256 = "sha256-ibCzZrqfbio1wBVFKB6S/wdRxnCc7s3IQdtI9txxhaM="; }; patchPhase = '' @@ -21,6 +23,8 @@ stdenv.mkDerivation rec { buildInputs = [ postgresql openssl ]; + passthru.tests.sign-in = nixosTests.pgmanage; + meta = with lib; { description = "A fast replacement for PGAdmin"; longDescription = '' diff --git a/pkgs/applications/misc/please-cli/default.nix b/pkgs/applications/misc/please-cli/default.nix new file mode 100644 index 0000000000000..f21ef4203831d --- /dev/null +++ b/pkgs/applications/misc/please-cli/default.nix @@ -0,0 +1,45 @@ +{ lib +, curl +, fetchFromGitHub +, jq +, makeBinaryWrapper +, please-cli +, stdenv +, testers +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "please-cli"; + version = "0.3.0"; + + src = fetchFromGitHub { + owner = "TNG"; + repo = "please-cli"; + rev = "v${finalAttrs.version}"; + hash = "sha256-rJIR4eMhXL4K9iO7JxnkgWNsICV3hPQb0aobWNuHAG0="; + }; + + nativeBuildInputs = [ makeBinaryWrapper ]; + + installPhase = '' + runHook preInstall + install -Dm555 please.sh "$out/bin/please" + wrapProgram $out/bin/please \ + --prefix PATH : ${lib.makeBinPath [ curl jq ]} + runHook postInstall + ''; + + passthru.tests = testers.testVersion { + package = please-cli; + version = "v${finalAttrs.version}"; + }; + + meta = with lib; { + description = "An AI helper script to create CLI commands based on GPT prompts"; + homepage = "https://github.com/TNG/please-cli"; + license = licenses.asl20; + maintainers = with maintainers; [ _8-bit-fox ]; + mainProgram = "please"; + platforms = platforms.all; + }; +}) diff --git a/pkgs/applications/misc/pot/Cargo.lock b/pkgs/applications/misc/pot/Cargo.lock new file mode 100644 index 0000000000000..7b3c3cc992568 --- /dev/null +++ b/pkgs/applications/misc/pot/Cargo.lock @@ -0,0 +1,5074 @@ +# This file is automatically @generated by Cargo. +# It is not intended for manual editing. +version = 3 + +[[package]] +name = "adler" +version = "1.0.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f26201604c87b1e01bd3d98f8d5d9a8fcbb815e8cedb41ffccbeb4bf593a35fe" + +[[package]] +name = "aho-corasick" +version = "0.7.20" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = 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= [ + "byteorder", + "enumflags2", + "libc", + "serde", + "static_assertions", + "zvariant_derive", +] + +[[package]] +name = "zvariant_derive" +version = "3.12.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "34c20260af4b28b3275d6676c7e2a6be0d4332e8e0aba4616d34007fd84e462a" +dependencies = [ + "proc-macro-crate", + "proc-macro2", + "quote", + "syn 1.0.109", + "zvariant_utils", +] + +[[package]] +name = "zvariant_utils" +version = "1.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "53b22993dbc4d128a17a3b6c92f1c63872dd67198537ee728d8b5d7c40640a8b" +dependencies = [ + "proc-macro2", + "quote", + "syn 1.0.109", +] diff --git a/pkgs/applications/misc/pot/default.nix b/pkgs/applications/misc/pot/default.nix new file mode 100644 index 0000000000000..87bcd68f78c22 --- /dev/null +++ b/pkgs/applications/misc/pot/default.nix @@ -0,0 +1,139 @@ +{ lib +, stdenv +, stdenvNoCC +, rustPlatform +, fetchFromGitHub +, wrapGAppsHook +, cargo +, rustc +, cargo-tauri +, pkg-config +, nodePackages +, esbuild +, buildGoModule +, jq +, moreutils +, libayatana-appindicator +, gtk3 +, webkitgtk +, libsoup +, openssl +, xdotool +}: + +stdenv.mkDerivation rec { + pname = "pot"; + version = "0.5.0"; + + src = fetchFromGitHub { + owner = "pot-app"; + repo = "pot-desktop"; + rev = version; + hash = "sha256-sAAdw7gYUQTHZYmxSAk2LByR+iMT836sQolk2NOgWD0="; + }; + + sourceRoot = "source/src-tauri"; + + postPatch = '' + substituteInPlace $cargoDepsCopy/libappindicator-sys-*/src/lib.rs \ + --replace "libayatana-appindicator3.so.1" "${libayatana-appindicator}/lib/libayatana-appindicator3.so.1" + + chmod -R +w .. + # Disable auto update check by default + sed -i -e '/auto_check/s/true/false/' src/main.rs ../src/windows/Config/index.jsx + ''; + + pnpm-deps = stdenvNoCC.mkDerivation { + pname = "${pname}-pnpm-deps"; + inherit src version; + + nativeBuildInputs = [ + jq + moreutils + nodePackages.pnpm + ]; + + installPhase = '' + export HOME=$(mktemp -d) + pnpm config set store-dir $out + # use --ignore-script and --no-optional to avoid downloading binaries + # use --frozen-lockfile to avoid checking git deps + pnpm install --frozen-lockfile --no-optional --ignore-script + + # Remove timestamp and sort the json files + rm -rf $out/v3/tmp + for f in $(find $out -name "*.json"); do + sed -i -E -e 's/"checkedAt":[0-9]+,//g' $f + jq --sort-keys . $f | sponge $f + done + ''; + + dontFixup = true; + outputHashMode = "recursive"; + outputHash = "sha256-lqGskG1MWbZKEmqJf4b9dGltmFHw/qOo/Sh7JIFS4IQ="; + }; + + cargoDeps = rustPlatform.importCargoLock { + lockFile = ./Cargo.lock; + outputHashes = { + "tauri-plugin-single-instance-0.0.0" = "sha256-M6uGcf4UWAU+494wAK/r2ta1c3IZ07iaURLwJJR9F3U="; + "tauri-plugin-autostart-0.0.0" = "sha256-M6uGcf4UWAU+494wAK/r2ta1c3IZ07iaURLwJJR9F3U="; + "enigo-0.1.2" = "sha256-99VJ0WYD8jV6CYUZ1bpYJBwIE2iwOZ9SjOvyA2On12Q="; + }; + }; + + nativeBuildInputs = [ + rustPlatform.cargoSetupHook + cargo + rustc + cargo-tauri + wrapGAppsHook + nodePackages.pnpm + pkg-config + ]; + + buildInputs = [ + gtk3 + libsoup + libayatana-appindicator + openssl + webkitgtk + xdotool + ]; + + ESBUILD_BINARY_PATH = "${lib.getExe (esbuild.override { + buildGoModule = args: buildGoModule (args // rec { + version = "0.17.15"; + src = fetchFromGitHub { + owner = "evanw"; + repo = "esbuild"; + rev = "v${version}"; + hash = "sha256-AzkjVw3o+yP/l6jiMmgzaymb0el2/OcAl8WQYbuMprw="; + }; + vendorHash = "sha256-+BfxCyg0KkDQpHt/wycy/8CTG6YBA/VJvJFhhzUnSiQ="; + }); + })}"; + + preBuild = '' + export HOME=$(mktemp -d) + pnpm config set store-dir ${pnpm-deps} + pnpm install --offline --frozen-lockfile --no-optional --ignore-script + chmod -R +w ../node_modules + pnpm rebuild + # Use cargo-tauri from nixpkgs instead of pnpm tauri from npm + cargo tauri build -b deb + ''; + + preInstall = '' + mv target/release/bundle/deb/*/data/usr/ $out + ''; + + meta = with lib; { + description = "A cross-platform translation software"; + homepage = "https://pot.pylogmon.com"; + platforms = platforms.linux; + license = licenses.gpl3Only; + maintainers = with maintainers; [ linsui ]; + }; +} + diff --git a/pkgs/games/doom-ports/shavee/default.nix b/pkgs/applications/misc/shavee/default.nix index 12ba3fbf6c3b9..10dc7507a00dc 100644 --- a/pkgs/games/doom-ports/shavee/default.nix +++ b/pkgs/applications/misc/shavee/default.nix @@ -1,4 +1,12 @@ -{ lib, pkgs, rustPlatform, fetchFromGitHub, pkg-config, openssl, zlib,stdenv, pam }: +{ lib +, stdenv +, rustPlatform +, fetchFromGitHub +, pam +, pkg-config +, openssl +, zlib +}: rustPlatform.buildRustPackage rec { pname = "shavee"; @@ -8,10 +16,10 @@ rustPlatform.buildRustPackage rec { owner = "ashuio"; repo = "shavee"; rev = "v${version}"; - sha256 = "sha256-41wJ3QBZdmCl7v/6JetXhzH2zF7tsKYMKZY1cKhByX8="; + hash = "sha256-41wJ3QBZdmCl7v/6JetXhzH2zF7tsKYMKZY1cKhByX8="; }; - cargoSha256 = "sha256-iNGn5KknSNgazFSu6Nur7AkKVb6qKMxuFwTdCz5djWU="; + cargoHash = "sha256-iNGn5KknSNgazFSu6Nur7AkKVb6qKMxuFwTdCz5djWU="; nativeBuildInputs = [ pkg-config @@ -19,8 +27,8 @@ rustPlatform.buildRustPackage rec { buildInputs = [ openssl - zlib pam + zlib ]; # these tests require network access @@ -29,11 +37,11 @@ rustPlatform.buildRustPackage rec { "--skip=filehash::tests::get_filehash_unit_test" ]; - meta = with lib; { - description = "A Program to automatically decrypt and mount ZFS datasets using Yubikey HMAC as 2FA or any File on USB/SFTP/HTTPS."; + meta = { homepage = "https://github.com/ashuio/shavee"; - license = licenses.mit; - maintainers = with maintainers; [jasonodoom]; - platforms = platforms.linux; + description = "A program to automatically decrypt and mount ZFS datasets using Yubikey HMAC as 2FA or any File on USB/SFTP/HTTPS"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ jasonodoom ]; + platforms = lib.platforms.linux; }; } diff --git a/pkgs/applications/misc/slic3r/boost-compile-error.patch b/pkgs/applications/misc/slic3r/boost-compile-error.patch deleted file mode 100644 index 4dbdb85f743d2..0000000000000 --- a/pkgs/applications/misc/slic3r/boost-compile-error.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff --git a/xs/src/libslic3r/GCodeSender.hpp b/xs/src/libslic3r/GCodeSender.hpp -index cc0b2983..0f39f5a3 100644 ---- a/xs/src/libslic3r/GCodeSender.hpp -+++ b/xs/src/libslic3r/GCodeSender.hpp -@@ -9,6 +9,7 @@ - #include <boost/asio.hpp> - #include <boost/bind.hpp> - #include <boost/thread.hpp> -+#include <boost/core/noncopyable.hpp> - - namespace Slic3r { - diff --git a/pkgs/applications/misc/slic3r/default.nix b/pkgs/applications/misc/slic3r/default.nix index 2a7ff5940b4fc..923e480c1f0f6 100644 --- a/pkgs/applications/misc/slic3r/default.nix +++ b/pkgs/applications/misc/slic3r/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, perl, makeWrapper +{ lib, stdenv, fetchFromGitHub, fetchpatch, perl, makeWrapper , makeDesktopItem, which, perlPackages, boost, wrapGAppsHook }: @@ -42,10 +42,20 @@ stdenv.mkDerivation rec { sed -i 's|"/usr/include/asm-generic/ioctls.h"|<asm-generic/ioctls.h>|g' xs/src/libslic3r/GCodeSender.cpp ''; - # note the boost-compile-error is fixed in - # https://github.com/slic3r/Slic3r/commit/90f108ae8e7a4315f82e317f2141733418d86a68 - # this patch can be probably be removed in the next version after 1.3.0 - patches = lib.optional (lib.versionAtLeast boost.version "1.56.0") ./boost-compile-error.patch; + patches = [ + (fetchpatch { + url = "https://web.archive.org/web/20230606220657if_/https://sources.debian.org/data/main/s/slic3r/1.3.0%2Bdfsg1-5/debian/patches/Drop-error-admesh-works-correctly-on-little-endian-machin.patch"; + hash = "sha256-+F94jzMFBdI++SKgyEZTBaHFVbjxWwgJa8YVbpK0euI="; + }) + (fetchpatch { + url = "https://web.archive.org/web/20230606220036if_/https://sources.debian.org/data/main/s/slic3r/1.3.0+dfsg1-5/debian/patches/0006-Fix-FTBFS-with-Boost-1.71.patch"; + hash = "sha256-4jvNccttig5YI1hXSANAWxVz6C4+kowlacMXVCpFgOo="; + }) + (fetchpatch { + url = "https://web.archive.org/web/20230606220054if_/https://sources.debian.org/data/main/s/slic3r/1.3.0+dfsg1-5/debian/patches/fix_boost_174.patch"; + hash = "sha256-aSmxc2htmrla9l/DIRWeKdBW0LTV96wMUZSLLNjgbzY="; + }) + ]; buildPhase = '' export SLIC3R_NO_AUTO=true diff --git a/pkgs/applications/misc/slweb/default.nix b/pkgs/applications/misc/slweb/default.nix index edf0b9b05ffe2..445da783b0f8b 100644 --- a/pkgs/applications/misc/slweb/default.nix +++ b/pkgs/applications/misc/slweb/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "slweb"; - version = "0.5.5"; + version = "0.5.6"; src = fetchFromSourcehut { owner = "~strahinja"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Hk3L++J8JiCRXitNHi9uWb7aYN8lMG3GjfpmNyIpoKU="; + sha256 = "sha256-2jvHgFPnI/Uoa5s+MF3BLTA2I3WXYrsEi+XyImxx6BA="; }; nativeBuildInputs = [ redo-apenwarr ]; diff --git a/pkgs/applications/misc/snagboot/default.nix b/pkgs/applications/misc/snagboot/default.nix new file mode 100644 index 0000000000000..5618078d419c5 --- /dev/null +++ b/pkgs/applications/misc/snagboot/default.nix @@ -0,0 +1,78 @@ +{ lib +, stdenv +, fetchFromGitHub +, pythonRelaxDepsHook +, python3 +, snagboot +, testers +, gitUpdater +}: + +python3.pkgs.buildPythonApplication rec { + pname = "snagboot"; + version = "1.0"; + format = "pyproject"; + + src = fetchFromGitHub { + owner = "bootlin"; + repo = "snagboot"; + rev = "v${version}"; + hash = "sha256-QqGeELm2seX3tIKQvuXp9VsNDah+m9FNcaEVk6TMP0U="; + }; + + passthru = { + updateScript = gitUpdater { + rev-prefix = "v"; + ignoredVersions = ".(rc|beta).*"; + }; + + tests.version = testers.testVersion { + package = snagboot; + command = "snagrecover --version"; + version = "v${version}"; + }; + }; + + nativeBuildInputs = [ + pythonRelaxDepsHook + ]; + + pythonRemoveDeps = [ + "pylibfdt" + "swig" + ]; + + propagatedBuildInputs = with python3.pkgs; [ + setuptools + pyusb + pyserial + hid + crccheck + six + xmodem + pyyaml + libfdt + tftpy + ]; + + postInstall = lib.optionalString stdenv.isLinux '' + rules="src/snagrecover/80-snagboot.rules" + if [ ! -f "$rules" ]; then + echo "$rules is missing, must update the Nix file." + exit 1 + fi + + mkdir -p "$out/lib/udev/rules.d" + cp "$rules" "$out/lib/udev/rules.d/80-snagboot.rules" + ''; + + # There are no tests + doCheck = false; + + meta = { + homepage = "https://github.com/bootlin/snagboot"; + description = "Generic recovery and reflashing tool for embedded platforms"; + license = lib.licenses.gpl2; + maintainers = with lib.maintainers; [ otavio ]; + }; +} diff --git a/pkgs/applications/misc/spicetify-cli/default.nix b/pkgs/applications/misc/spicetify-cli/default.nix index 5a3f780110855..63c46def867e1 100644 --- a/pkgs/applications/misc/spicetify-cli/default.nix +++ b/pkgs/applications/misc/spicetify-cli/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "spicetify-cli"; - version = "2.18.1"; + version = "2.19.0"; src = fetchFromGitHub { owner = "spicetify"; repo = pname; rev = "v${version}"; - sha256 = "sha256-BZuvuvbFCZ6VaztlZhlUZhJ7vf4W49mVHiORhH8oH2Y="; + sha256 = "sha256-ax1e4M+BReVjudcmR1fatMzH/zTNCPG4BWoSNJPQFts="; }; vendorHash = "sha256-g0SuXDzYjg0mGzeDuB2tQnVnDmTiL5vw0r9QWSgIs3Q="; diff --git a/pkgs/applications/misc/streamdeck-ui/default.nix b/pkgs/applications/misc/streamdeck-ui/default.nix index 21ac1939f4e9d..1c1aa80de79c8 100644 --- a/pkgs/applications/misc/streamdeck-ui/default.nix +++ b/pkgs/applications/misc/streamdeck-ui/default.nix @@ -7,6 +7,7 @@ , writeText , makeDesktopItem , xvfb-run +, qt5 }: python3Packages.buildPythonApplication rec { @@ -77,6 +78,8 @@ python3Packages.buildPythonApplication rec { pyside2 streamdeck xlib + ] ++ lib.optionals stdenv.isLinux [ + qt5.qtwayland ]; nativeCheckInputs = [ diff --git a/pkgs/applications/misc/swaynotificationcenter/default.nix b/pkgs/applications/misc/swaynotificationcenter/default.nix index e9d9a9ef38727..639edced0fba8 100644 --- a/pkgs/applications/misc/swaynotificationcenter/default.nix +++ b/pkgs/applications/misc/swaynotificationcenter/default.nix @@ -28,13 +28,13 @@ stdenv.mkDerivation (finalAttrs: rec { pname = "SwayNotificationCenter"; - version = "0.8.0"; + version = "0.9.0"; src = fetchFromGitHub { owner = "ErikReider"; - repo = "SwayNotificationCenter"; + repo = pname; rev = "v${version}"; - hash = "sha256-E9CjNx/xzkkOZ39XbfIb1nJFheZVFpj/lwmITKtpb7A="; + hash = "sha256-mwwSTs4d9jUXUy33nSYJCRFlpH6naCmbRUSpfVacMBE="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/misc/system76-keyboard-configurator/default.nix b/pkgs/applications/misc/system76-keyboard-configurator/default.nix index 3844fb72db32c..16f719da957a0 100644 --- a/pkgs/applications/misc/system76-keyboard-configurator/default.nix +++ b/pkgs/applications/misc/system76-keyboard-configurator/default.nix @@ -6,13 +6,13 @@ rustPlatform.buildRustPackage rec { pname = "system76-keyboard-configurator"; - version = "1.3.3"; + version = "1.3.4"; src = fetchFromGitHub { owner = "pop-os"; repo = "keyboard-configurator"; rev = "v${version}"; - sha256 = "sha256-8Mb07OlmYl/dNxCdBrAq7mgXZvi0oqtt76UX8TMWUPY="; + sha256 = "sha256-RaJOtlnjxYiA6WrKRmIG3McAzc35zR3uMScLy2kLx98="; }; nativeBuildInputs = [ @@ -28,7 +28,7 @@ rustPlatform.buildRustPackage rec { udev ]; - cargoHash = "sha256-3IAljoL4cabZ9rpgqPrgG7ofwETHS/9OlBKjxTwCDTU="; + cargoHash = "sha256-qoOaLDzJ9WqCnI/kBSiu6DZx1HWU8Cd8ch6VVcgIfB4="; meta = with lib; { description = "Keyboard configuration application for System76 keyboards and laptops"; diff --git a/pkgs/applications/misc/tailscale-systray/default.nix b/pkgs/applications/misc/tailscale-systray/default.nix new file mode 100644 index 0000000000000..85e927f018f13 --- /dev/null +++ b/pkgs/applications/misc/tailscale-systray/default.nix @@ -0,0 +1,32 @@ +{ lib +, buildGoModule +, fetchFromGitHub +, pkg-config +, gtk3 +, libayatana-appindicator +}: +buildGoModule rec { + pname = "tailscale-systray"; + version = "2022-10-19"; + + src = fetchFromGitHub { + owner = "mattn"; + repo = pname; + rev = "e7f8893684e7b8779f34045ca90e5abe6df6056d"; + sha256 = "sha256-3kozp6jq0xGllxoK2lGCNUahy/FvXyq11vNSxfDehKE="; + }; + + vendorHash = "sha256-YJ74SeZAMS+dXyoPhPTJ3L+5uL5bF8gumhMOqfvmlms="; + + nativeBuildInputs = [ pkg-config ]; + buildInputs = [ gtk3 libayatana-appindicator ]; + + proxyVendor = true; + + meta = with lib; { + description = "Tailscale systray"; + homepage = "https://github.com/mattn/tailscale-systray"; + license = licenses.mit; + maintainers = with maintainers; [ qbit ]; + }; +} diff --git a/pkgs/applications/misc/tandoor-recipes/common.nix b/pkgs/applications/misc/tandoor-recipes/common.nix index 1a3e4d2611440..ffa3101ae11c0 100644 --- a/pkgs/applications/misc/tandoor-recipes/common.nix +++ b/pkgs/applications/misc/tandoor-recipes/common.nix @@ -1,12 +1,12 @@ { lib, fetchFromGitHub }: rec { - version = "1.4.9"; + version = "1.4.12"; src = fetchFromGitHub { owner = "TandoorRecipes"; repo = "recipes"; rev = version; - sha256 = "sha256-h424lUm/wmCHXkMW2XejogvH3wL/+J67cG4m8rIWM1U="; + sha256 = "sha256-ZGPXcpicDYCE+J9mC2Dk/Ds2NYfUETuKXqHxpAGH86w="; }; yarnSha256 = "sha256-LJ0uL66tcK6zL8Mkd2UB8dHsslMTtf8wQmgbZdvOT6s="; diff --git a/pkgs/applications/misc/tandoor-recipes/default.nix b/pkgs/applications/misc/tandoor-recipes/default.nix index 1f5dee51c599b..887cdb87608c7 100644 --- a/pkgs/applications/misc/tandoor-recipes/default.nix +++ b/pkgs/applications/misc/tandoor-recipes/default.nix @@ -42,12 +42,6 @@ python.pkgs.pythonPackages.buildPythonPackage rec { patches = [ # Allow setting MEDIA_ROOT through environment variable ./media-root.patch - # Address CVE-2023-31047 on Django 4.2.1+ - (fetchpatch { - name = "fix-multiple-file-field"; - url = "https://github.com/TandoorRecipes/recipes/pull/2458/commits/6b04c922977317354a367487427b15a8ed619be9.patch"; - hash = "sha256-KmfjJSrB/4tOWtU7zrDJ/AOG4XlmWy/halw8IEEXdZ0="; - }) ]; propagatedBuildInputs = with python.pkgs; [ diff --git a/pkgs/applications/misc/tellico/default.nix b/pkgs/applications/misc/tellico/default.nix index d732fdde136a3..56f4c43624bf2 100644 --- a/pkgs/applications/misc/tellico/default.nix +++ b/pkgs/applications/misc/tellico/default.nix @@ -24,14 +24,14 @@ mkDerivation rec { pname = "tellico"; - version = "3.4.6"; + version = "3.5"; src = fetchFromGitLab { domain = "invent.kde.org"; owner = "office"; repo = pname; rev = "v${version}"; - hash = "sha256-aHA4DYuxh4vzXL82HRGMPfqS0DGqq/FLMEuhsr4eLko="; + hash = "sha256-uMq/iqPAbjR85wkgqUS1pk2BL/eatNFpyKcagjN5rJ4="; }; postPatch = '' diff --git a/pkgs/applications/misc/ticker/default.nix b/pkgs/applications/misc/ticker/default.nix index 51751ddc580ce..b7fdb8797b518 100644 --- a/pkgs/applications/misc/ticker/default.nix +++ b/pkgs/applications/misc/ticker/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "ticker"; - version = "4.5.10"; + version = "4.5.13"; src = fetchFromGitHub { owner = "achannarasappa"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-2CELRY6V7/6PcC5s4XjOqadxXc5SbS0vstqLEej3xnI="; + hash = "sha256-0T4Cl9o21Tt4ZFeY7kUe4Obu4IY9JMLBwUqgs4rZx1U="; }; vendorHash = "sha256-c7wU9LLRlS9kOhE4yAiKAs/npQe8lvSwPcd+/D8o9rk="; diff --git a/pkgs/applications/misc/ttyper/default.nix b/pkgs/applications/misc/ttyper/default.nix index 9d56d1366173b..b9a5b8b4fa05b 100644 --- a/pkgs/applications/misc/ttyper/default.nix +++ b/pkgs/applications/misc/ttyper/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "ttyper"; - version = "1.2.0"; + version = "1.2.1"; src = fetchFromGitHub { owner = "max-niederman"; repo = pname; rev = "v${version}"; - sha256 = "sha256-puChbaLjpm5FmpYIrb+3eKO9BSFu99R5j4ymKH5359Y="; + sha256 = "sha256-1frm41Vbo4t1BELq0rNGb1hY7RQLt8IJaEhtyNfNNdU="; }; - cargoSha256 = "sha256-DKpZQZgMR+gbcxxAD8ru5O4o7vr6n4seBVqor3HrYtY="; + cargoSha256 = "sha256-UyO8oX54qVQA7nFx6Y/cSgb33Cz3M0kFeiYqUrSbCe0="; meta = with lib; { description = "Terminal-based typing test"; diff --git a/pkgs/applications/misc/usql/default.nix b/pkgs/applications/misc/usql/default.nix index 8f6bbf7fd0037..d25442dcf9b20 100644 --- a/pkgs/applications/misc/usql/default.nix +++ b/pkgs/applications/misc/usql/default.nix @@ -10,18 +10,18 @@ buildGoModule rec { pname = "usql"; - version = "0.14.6"; + version = "0.14.7"; src = fetchFromGitHub { owner = "xo"; repo = "usql"; rev = "v${version}"; - hash = "sha256-RxnxF+KzRNPQ5w5zsk9g1tr557vGe7bi32pSiGL2rK8="; + hash = "sha256-iR+gRWSSxAudDewGBVlEQunFfodYFAuShVq2Z1rZ2k4="; }; buildInputs = [ unixODBC icu ]; - vendorHash = "sha256-66HQNh8GNPGYsA4PXIij2PMUnj/SxLSQ/+5junR22UE="; + vendorHash = "sha256-teVsEVCaSn0/t79LIig3gTw5J8j2YTRx7CoWVDGwQNI="; proxyVendor = true; # Exclude broken impala & hive driver diff --git a/pkgs/applications/misc/variety/default.nix b/pkgs/applications/misc/variety/default.nix index 5d9965c0d14a8..da6d7b48696ac 100644 --- a/pkgs/applications/misc/variety/default.nix +++ b/pkgs/applications/misc/variety/default.nix @@ -75,10 +75,9 @@ python3.pkgs.buildPythonApplication rec { substituteInPlace variety_lib/varietyconfig.py \ --replace "__variety_data_directory__ = \"../data\"" \ "__variety_data_directory__ = \"$out/share/variety\"" - substituteInPlace data/scripts/set_wallpaper \ - --replace /bin/bash ${runtimeShell} - substituteInPlace data/scripts/get_wallpaper \ - --replace /bin/bash ${runtimeShell} + substituteInPlace variety/VarietyWindow.py \ + --replace '[script,' '["${runtimeShell}", script,' \ + --replace 'check_output(script)' 'check_output(["${runtimeShell}", script])' ''; meta = with lib; { diff --git a/pkgs/applications/misc/waybar/default.nix b/pkgs/applications/misc/waybar/default.nix index d22c9a9088168..5ba7e6e013c19 100644 --- a/pkgs/applications/misc/waybar/default.nix +++ b/pkgs/applications/misc/waybar/default.nix @@ -16,6 +16,7 @@ , howard-hinnant-date , libinotify-kqueue , libxkbcommon +, cavaSupport ? true, alsa-lib, fftw, iniparser, ncurses, pipewire, portaudio, SDL2 , evdevSupport ? true, libevdev , inputSupport ? true, libinput , jackSupport ? true, libjack2 @@ -33,18 +34,37 @@ , wireplumberSupport ? true, wireplumber , withMediaPlayer ? mprisSupport && false, glib, gobject-introspection, python3 }: - +let + # Derived from subprojects/cava.wrap + libcava = rec { + version = "0.8.4"; + src = fetchFromGitHub { + owner = "LukashonakV"; + repo = "cava"; + rev = version; + hash = "sha256-66uc0CEriV9XOjSjFTt+bxghEXY1OGrpjd+7d6piJUI="; + }; + }; +in stdenv.mkDerivation rec { pname = "waybar"; - version = "0.9.17"; + version = "0.9.18"; src = fetchFromGitHub { owner = "Alexays"; repo = "Waybar"; rev = version; - hash = "sha256-sdNenmzI/yvN9w4Z83ojDJi+2QBx2hxhJQCFkc5kCZw="; + hash = "sha256-bnaYNa1jb7kZ1mtMzeOQqz4tmBG1w5YXlQWoop1Q0Yc="; }; + postUnpack = lib.optional cavaSupport '' + ( + cd "$sourceRoot" + cp -R --no-preserve=mode,ownership ${libcava.src} subprojects/cava-0.8.4 + patchShebangs . + ) + ''; + nativeBuildInputs = [ meson ninja pkg-config scdoc wrapGAppsHook ] ++ lib.optional withMediaPlayer gobject-introspection; @@ -60,6 +80,13 @@ stdenv.mkDerivation rec { buildInputs = with lib; [ wayland wlroots gtkmm3 libsigcxx jsoncpp spdlog gtk-layer-shell howard-hinnant-date libxkbcommon ] ++ optional (!stdenv.isLinux) libinotify-kqueue + ++ optional cavaSupport alsa-lib + ++ optional cavaSupport iniparser + ++ optional cavaSupport fftw + ++ optional cavaSupport ncurses + ++ optional cavaSupport pipewire + ++ optional cavaSupport portaudio + ++ optional cavaSupport SDL2 ++ optional evdevSupport libevdev ++ optional inputSupport libinput ++ optional jackSupport libjack2 @@ -80,6 +107,7 @@ stdenv.mkDerivation rec { mesonFlags = (lib.mapAttrsToList (option: enable: "-D${option}=${if enable then "enabled" else "disabled"}") { + cava = cavaSupport; dbusmenu-gtk = traySupport; jack = jackSupport; libinput = inputSupport; diff --git a/pkgs/applications/misc/wordnet/default.nix b/pkgs/applications/misc/wordnet/default.nix index d49f55574a86f..88cc16ae76453 100644 --- a/pkgs/applications/misc/wordnet/default.nix +++ b/pkgs/applications/misc/wordnet/default.nix @@ -25,7 +25,6 @@ stdenv.mkDerivation rec { ]; postInstall = '' - wrapProgram $out/bin/wishwn --set TK_LIBRARY "${tk}/lib/${tk.libPrefix}" wrapProgram $out/bin/wnb --prefix PATH : "$out/bin" ''; diff --git a/pkgs/applications/networking/adguardian/default.nix b/pkgs/applications/networking/adguardian/default.nix new file mode 100644 index 0000000000000..54b360ac41c47 --- /dev/null +++ b/pkgs/applications/networking/adguardian/default.nix @@ -0,0 +1,31 @@ +{ lib +, rustPlatform +, fetchFromGitHub +, stdenv +, darwin +}: + +rustPlatform.buildRustPackage rec { + pname = "adguardian"; + version = "1.2.0"; + + src = fetchFromGitHub { + owner = "Lissy93"; + repo = "AdGuardian-Term"; + rev = version; + hash = "sha256-UZIwVvBBBj82IxGuZPKaNc/UZI1DAh5/5ni3fjiRF4o="; + }; + + cargoSha256 = "sha256-MnhikzQNeCjK5bCjePw8k7pf7RR63k1eZjobENlQd94="; + + buildInputs = lib.optionals stdenv.isDarwin [ + darwin.apple_sdk.frameworks.Security + ]; + + meta = with lib; { + description = "Terminal-based, real-time traffic monitoring and statistics for your AdGuard Home instance"; + homepage = "https://github.com/Lissy93/AdGuardian-Term"; + license = licenses.mit; + maintainers = with maintainers; [ GaetanLepage ]; + }; +} diff --git a/pkgs/applications/networking/avalanchego/default.nix b/pkgs/applications/networking/avalanchego/default.nix index 45d35f1ccceff..e88c94647e79c 100644 --- a/pkgs/applications/networking/avalanchego/default.nix +++ b/pkgs/applications/networking/avalanchego/default.nix @@ -8,16 +8,16 @@ buildGoModule rec { pname = "avalanchego"; - version = "1.10.1"; + version = "1.10.2"; src = fetchFromGitHub { owner = "ava-labs"; repo = pname; rev = "v${version}"; - hash = "sha256-KGHghhHALMoFuO7i4wq9B2HA2WTA80WSOR5Odpo1Ing="; + hash = "sha256-rQ7WGsDCGR2yrMpNTP3yxnRFEGkCpkFIknxuARYd7TM="; }; - vendorHash = "sha256-+YzC7xjrRI0e8/cOcJM3AZS5hI82H1qFxnfUGMgqXhs="; + vendorHash = "sha256-v8+ASwvXhUT9cz78aWDyWpgHOSoecLCLFMGfjTtRlJQ="; # go mod vendor has a bug, see: https://github.com/golang/go/issues/57529 proxyVendor = true; diff --git a/pkgs/applications/networking/breitbandmessung/default.nix b/pkgs/applications/networking/breitbandmessung/default.nix index 6fab38f973603..22ffc8903c4ac 100644 --- a/pkgs/applications/networking/breitbandmessung/default.nix +++ b/pkgs/applications/networking/breitbandmessung/default.nix @@ -2,7 +2,7 @@ , stdenv , fetchurl , dpkg -, electron_16 +, electron_24 , makeWrapper , nixosTests , nodePackages @@ -12,13 +12,13 @@ let inherit (stdenv.hostPlatform) system; - version = "3.1.0"; + version = "3.3.0"; systemArgs = rec { x86_64-linux = rec { src = fetchurl { url = "https://download.breitbandmessung.de/bbm/Breitbandmessung-${version}-linux.deb"; - sha256 = "sha256-jSP+H9ej9Wd+swBZSy9uMi2ExSTZ191FGZhqaocTl7w="; + sha256 = "sha256-12mbdxklje9msnRtNk1RAtIg3OCybev/vUersDZj2i4="; }; nativeBuildInputs = [ @@ -49,7 +49,7 @@ let } EOF - makeWrapper ${electron_16}/bin/electron $out/bin/breitbandmessung \ + makeWrapper ${electron_24}/bin/electron $out/bin/breitbandmessung \ --add-flags $out/share/breitbandmessung/resources/build/electron.js # Fix the desktop link @@ -61,7 +61,7 @@ let x86_64-darwin = { src = fetchurl { url = "https://download.breitbandmessung.de/bbm/Breitbandmessung-${version}-mac.dmg"; - sha256 = "sha256-2c8mDKJuHDSw7p52EKnJO5vr2kNTLU6r9pmGPANjE20="; + sha256 = "sha256-a27R/N13i4qU2znTKz+LGxSdgSzJ0MzIHeiPHyRd65k="; }; nativeBuildInputs = [ undmg ]; diff --git a/pkgs/applications/networking/browsers/brave/default.nix b/pkgs/applications/networking/browsers/brave/default.nix index e1fc1a4f456a6..ba8b841616f1e 100644 --- a/pkgs/applications/networking/browsers/brave/default.nix +++ b/pkgs/applications/networking/browsers/brave/default.nix @@ -90,11 +90,11 @@ in stdenv.mkDerivation rec { pname = "brave"; - version = "1.51.118"; + version = "1.52.117"; src = fetchurl { url = "https://github.com/brave/brave-browser/releases/download/v${version}/brave-browser_${version}_amd64.deb"; - sha256 = "sha256-/OrnB4M6oefZ2aG2rQst8H4UZ/7vAFzyqWsn9kerb9c="; + sha256 = "sha256-oI/KRAfPGS5WEjLmTF6CQBjXLxv4vvpFMqPmh+O51QY="; }; dontConfigure = true; diff --git a/pkgs/applications/networking/browsers/chromium/common.nix b/pkgs/applications/networking/browsers/chromium/common.nix index 774c61b55678a..9b0b8ab21ce8f 100644 --- a/pkgs/applications/networking/browsers/chromium/common.nix +++ b/pkgs/applications/networking/browsers/chromium/common.nix @@ -155,7 +155,6 @@ let curl libepoxy libffi - ] ++ lib.optionals (chromiumVersionAtLeast "114") [ libevdev ] ++ lib.optional systemdSupport systemd ++ lib.optionals cupsSupport [ libgcrypt cups ] @@ -170,6 +169,13 @@ let # (we currently package 1.26 in Nixpkgs while Chromium bundles 1.21): # Source: https://bugs.chromium.org/p/angleproject/issues/detail?id=7582#c1 ./patches/angle-wayland-include-protocol.patch + # We need to revert this patch to build M114+ with LLVM 16: + (githubPatch { + # Reland [clang] Disable autoupgrading debug info in ThinLTO builds + commit = "54969766fd2029c506befc46e9ce14d67c7ed02a"; + sha256 = "sha256-Vryjg8kyn3cxWg3PmSwYRG6zrHOqYWBMSdEMGiaPg6M="; + revert = true; + }) ]; postPatch = '' diff --git a/pkgs/applications/networking/browsers/chromium/upstream-info.json b/pkgs/applications/networking/browsers/chromium/upstream-info.json index 9c5f04ad7efa6..2e356d895bdfb 100644 --- a/pkgs/applications/networking/browsers/chromium/upstream-info.json +++ b/pkgs/applications/networking/browsers/chromium/upstream-info.json @@ -1,63 +1,63 @@ { "stable": { - "version": "113.0.5672.126", - "sha256": "14rdvidabbh0abp932m747iribvpfcha8hhxh9spck9hjkaprvqd", - "sha256bin64": "1w8b41ij6xl8byh1977skxwwq0nivpfn8wb3gv12xvm7sw24jqka", + "version": "114.0.5735.106", + "sha256": "0jihf4gv7n2kkp78n42ha4ick8mzixb4xrfdk84iqazmifrb066z", + "sha256bin64": "1zlw9gjb2fmjf1d952adqg07cyq60yck0aarz20lcvv2jzb7s46i", "deps": { "gn": { - "version": "2023-03-18", + "version": "2023-04-19", "url": "https://gn.googlesource.com/gn", - "rev": "41fef642de70ecdcaaa26be96d56a0398f95abd4", - "sha256": "12w4g2dl58283allclpi1c4i6ih9v2xvdb9hpbmfda12v8lizmlq" + "rev": "5a004f9427a050c6c393c07ddb85cba8ff3849fa", + "sha256": "01xrh9m9m6x8lz0vxwdw2mrhrvnw93zpg09hwdhqakj06agf4jjk" } }, "chromedriver": { - "version": "113.0.5672.63", - "sha256_linux": "09x1p7wk5am3ri7ahsdlg4nas22xcwmxzwa5d6fs6hjygghm2q8j", - "sha256_darwin": "1hbd7mk7lifhk72p0hppj9vz1rnfzklg3pdmfa4ixsbgachvxii6", - "sha256_darwin_aarch64": "1c4gyr86b463fq0k31ajsp2npad871nqpacpxr26imd5zzirmsgf" + "version": "114.0.5735.90", + "sha256_linux": "0i3g79c4vdi5mys295lpzmmh0pgxhh14mjmz9amhq5rrn7w7wy57", + "sha256_darwin": "0l0nzx64vrr2wggwdyrcv0xbv79avr431cppprl4dg62b39wkgba", + "sha256_darwin_aarch64": "0z549y1w855ljia5w8sf9w6398pnn89y28pg26ygqad888b3msql" } }, "beta": { - "version": "114.0.5735.35", - "sha256": "1ik3d886pcpqs7fnqf7ck0y8x8dbi1d4aqm227qwv0jw2p4a0qyb", - "sha256bin64": "0xx53x6c7r8cji7d2663zn4p4yklzyc124abqlhyr14w8p2lfldq", + "version": "115.0.5790.13", + "sha256": "0ias5jn8lwpds3gsmjps0rlks58ln5znwx52h767f8mc9y24fagx", + "sha256bin64": "11v374p82k8xbak37c377km9y2hvy8avw6mjl9az5kzb2am3g566", "deps": { "gn": { - "version": "2023-04-19", + "version": "2023-05-19", "url": "https://gn.googlesource.com/gn", - "rev": "5a004f9427a050c6c393c07ddb85cba8ff3849fa", - "sha256": "01xrh9m9m6x8lz0vxwdw2mrhrvnw93zpg09hwdhqakj06agf4jjk" + "rev": "e9e83d9095d3234adf68f3e2866f25daf766d5c7", + "sha256": "0y07c18xskq4mclqiz3a63fz8jicz2kqridnvdhqdf75lhp61f8a" } } }, "dev": { - "version": "115.0.5773.4", - "sha256": "18as1yqp7jyv92mn6lq4fl6mzq3w5qx4aqsw5nyixmgys4hfx6a6", - "sha256bin64": "0d0anrc2bdh9c8rs06jng45xd7sxw0raky3wrngbda2g4aqh817k", + "version": "116.0.5803.2", + "sha256": "0s3l0wvbvy0wcwxipbl9vlbp1441yfj8ylrwhlh7gy898ajl9q0j", + "sha256bin64": "0qgp0m67bpaali7w6bxy1jzw0aig4iiqqgg023k1q32712s192cs", "deps": { "gn": { - "version": "2023-05-09", + "version": "2023-05-26", "url": "https://gn.googlesource.com/gn", - "rev": "26aa46c283e40199b6f847ecca088dcea7099ded", - "sha256": "1z5w4fiypv4aq12qlc8in832n7k6wi4k64k4axardrsy24316r9d" + "rev": "e3978de3e8dafb50a2b11efa784e08699a43faf8", + "sha256": "17hwbcxmqsq3yfnafl4bbysdkk957mvqsn34iipzb61gyjbj7i6j" } } }, "ungoogled-chromium": { - "version": "113.0.5672.126", - "sha256": "14rdvidabbh0abp932m747iribvpfcha8hhxh9spck9hjkaprvqd", - "sha256bin64": "1w8b41ij6xl8byh1977skxwwq0nivpfn8wb3gv12xvm7sw24jqka", + "version": "114.0.5735.90", + "sha256": "1n16fp0zf38n7i8zb86ilx8g62xjnahf7q0c3zwj6n8pnqh8c6h7", + "sha256bin64": "1dgz21ycc41nxz8y5fqz73ll96vvlrf8vxfn65vy654jw7dsdpw6", "deps": { "gn": { - "version": "2023-03-18", + "version": "2023-04-19", "url": "https://gn.googlesource.com/gn", - "rev": "41fef642de70ecdcaaa26be96d56a0398f95abd4", - "sha256": "12w4g2dl58283allclpi1c4i6ih9v2xvdb9hpbmfda12v8lizmlq" + "rev": "5a004f9427a050c6c393c07ddb85cba8ff3849fa", + "sha256": "01xrh9m9m6x8lz0vxwdw2mrhrvnw93zpg09hwdhqakj06agf4jjk" }, "ungoogled-patches": { - "rev": "113.0.5672.126-1", - "sha256": "0s47zpl5qw5755hjhzk9g8l3ns9cwdzskq6dh1biyx1qpw0h8pld" + "rev": "114.0.5735.90-1", + "sha256": "1g4wjpxvzrdmm5cnc94s1j13hh2n6cq6vdw1hy53lr7nqkpsj1jb" } } } diff --git a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix index cd7ce3e4acc78..6a20729a78691 100644 --- a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix +++ b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix @@ -1,1015 +1,1015 @@ { - version = "113.0.2"; + version = "114.0"; sources = [ - { url = "https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-x86_64/ach/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-x86_64/ach/firefox-114.0.tar.bz2"; locale = "ach"; arch = "linux-x86_64"; - sha256 = "32dcba014203c5850fca0c8e86494c4df5fa7161cb9b3da6d642a6e2b1648f98"; + sha256 = "d797363bd556089e16258f2c7e165595281692008e83665b47e0361d6db8d282"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-x86_64/af/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-x86_64/af/firefox-114.0.tar.bz2"; locale = "af"; arch = "linux-x86_64"; - sha256 = "7ec57515d3cc65434a085cd42e501ecc331f69c065d3f226aee9cfa655753226"; + sha256 = "32e1b9c1ec56b2e042dfac928b99635f757a1f1d2dd55ccdb65935caa2cb3cab"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-x86_64/an/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-x86_64/an/firefox-114.0.tar.bz2"; locale = "an"; arch = "linux-x86_64"; - sha256 = "fa10d7ff268c80105dc6efbbca81fbe8bfd0261a390a0dce6b9d95d33fe646cd"; + sha256 = "21baef2530632e4a01e9725fac46915e53a0b65d82cbb58045e4491fd3bd8583"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-x86_64/ar/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-x86_64/ar/firefox-114.0.tar.bz2"; locale = "ar"; arch = "linux-x86_64"; - sha256 = "1b9c0bb9246450ea3ba96dcdcda8f9e538698c17852df188f76b684f68fa4b6d"; + sha256 = "add64ab6a87b589e404df87cb6c47ae4ab0275e0cad49aa224304bbb669ce9d5"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-x86_64/ast/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-x86_64/ast/firefox-114.0.tar.bz2"; locale = "ast"; arch = "linux-x86_64"; - sha256 = 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"https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-i686/te/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-i686/te/firefox-114.0.tar.bz2"; locale = "te"; arch = "linux-i686"; - sha256 = "c6db8c90543fa86acb2da3344083d60fc8dd81127a64834500f1815e91ab3624"; + sha256 = "5c49c65d47ff890b952f90464f9526bf510fe6dc290da5575ba648d77dafc656"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-i686/tg/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-i686/tg/firefox-114.0.tar.bz2"; locale = "tg"; arch = "linux-i686"; - sha256 = "eca876868ba651fa606ee7f539caaa9053393aaa371e54960ca809da5d089ccd"; + sha256 = "c7fc35786e753a6d1ac58c551dac2b58557b2044840bd3aaa4f861538de5e520"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-i686/th/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-i686/th/firefox-114.0.tar.bz2"; locale = "th"; arch = "linux-i686"; - sha256 = "7575c1c8011263bb7bcbfa46bc4b56901ef0afd3d1234211de154045d781bfec"; + sha256 = "534d88eef0d8e60f64c9fff772b3c00f47ac03e06b217d015faa4a4337fa9067"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-i686/tl/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-i686/tl/firefox-114.0.tar.bz2"; locale = "tl"; arch = "linux-i686"; - sha256 = "4fffbdb19cd8402f19918832509cc15bab1151751eeba6da77a235e110b60623"; + sha256 = "6a4f9af14c1f6095b8c15fb012e6a4f06ffcd356f63143f762b429de3cd35af2"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-i686/tr/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-i686/tr/firefox-114.0.tar.bz2"; locale = "tr"; arch = "linux-i686"; - sha256 = "52255e4bf89cdd482bef7eeba85d20da369aa4f28dfea934f294dd0b8bbf9119"; + sha256 = "e23e8b844e662e7161462cb28990472f73d037a981cc6e02a26416a5f3587b10"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-i686/trs/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-i686/trs/firefox-114.0.tar.bz2"; locale = "trs"; arch = "linux-i686"; - sha256 = "1becf4832218e06d42136eb415974e594c8459427844a734a2a35dbab7f2540b"; + sha256 = "6c6b65c7d25df5c590ca35aa73d7cad2735ed6afce287140d49390ee68836a98"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-i686/uk/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-i686/uk/firefox-114.0.tar.bz2"; locale = "uk"; arch = "linux-i686"; - sha256 = "49d942562c24def9b8d02ec6b93595dc4fdf39873b75f7b623ab8eff6792ad1f"; + sha256 = "8ce536594317af8dd6c9c2e5b82130c47f248363684830b1d52d9f3b7781fe73"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-i686/ur/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-i686/ur/firefox-114.0.tar.bz2"; locale = "ur"; arch = "linux-i686"; - sha256 = "477763a691e926f284a2a200dd764ad614aafdcb2994fd69ba9149183a495c2d"; + sha256 = "aa2e8f7483de339b997484804d6ec094724a0c1e2ce633e8ed0d0e5432446ed8"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-i686/uz/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-i686/uz/firefox-114.0.tar.bz2"; locale = "uz"; arch = "linux-i686"; - sha256 = "2cf4af24906fb88f832ea24c746254bb1b7e832d0566e038c2566c4e5bac0433"; + sha256 = "77135caf2a361fe752cb6fefef2aa400428bf41e2b5ac3db5fda2adb812400ad"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-i686/vi/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-i686/vi/firefox-114.0.tar.bz2"; locale = "vi"; arch = "linux-i686"; - sha256 = "503c50f16c3397b52e150454e4d8b63cff775e51b8f3c4567ffebfb2e02def98"; + sha256 = "aef3a98e48c3016075e09957a3cf33b162b5202d738c5cf7cd8bb2b4a1f7f92f"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-i686/xh/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-i686/xh/firefox-114.0.tar.bz2"; locale = "xh"; arch = "linux-i686"; - sha256 = "2ad3e8f03f58a36dc665ce1d9efe5480c5445a1018da79cfb34e49826d7ff1c5"; + sha256 = "b9f9c655c68430894fd62a18456c69de35001ecda2c05743e3dc665f2e904fb9"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-i686/zh-CN/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-i686/zh-CN/firefox-114.0.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha256 = "0731f9a47b048bcec53da33a8190b7130ef89d32b79d4539c9115019aedfe1bc"; + sha256 = "31ad19c847f318daf2678b96dd21f3ee15280fd233ce08ec776aa9ca45694e97"; } - { url = "https://archive.mozilla.org/pub/firefox/releases/113.0.2/linux-i686/zh-TW/firefox-113.0.2.tar.bz2"; + { url = "https://archive.mozilla.org/pub/firefox/releases/114.0/linux-i686/zh-TW/firefox-114.0.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha256 = "b2134e17f5d8faddd04b85e6ff57b02cbba915d64a97166eda45d3b7f7f65ccf"; + sha256 = "4b9dd443ee9d86f976d642b698ba51768554a3e8a9879521aee50e180d4dba1a"; } ]; } diff --git a/pkgs/applications/networking/browsers/firefox/packages.nix b/pkgs/applications/networking/browsers/firefox/packages.nix index f72af17d5c492..36a7822a4b719 100644 --- a/pkgs/applications/networking/browsers/firefox/packages.nix +++ b/pkgs/applications/networking/browsers/firefox/packages.nix @@ -3,10 +3,10 @@ { firefox = buildMozillaMach rec { pname = "firefox"; - version = "113.0.2"; + version = "114.0"; src = fetchurl { url = "mirror://mozilla/firefox/releases/${version}/source/firefox-${version}.source.tar.xz"; - sha512 = "7b1ff7d547fda02901f54a2593e03598a830698192003d833e27b85db0e00571ff66e03ebd4089e76fa65b09df000cbb2542450beeabb0b310875910603e6743"; + sha512 = "c6929d34583f25119738d1c817a24fd358fcada1f0ba5c14bab07c2acd35f18a012f23d054bfe8c6b12c0dda7bd3abdc7a305a36c7a4d36542885abeea3aafec"; }; meta = { @@ -85,11 +85,11 @@ firefox-esr-102 = buildMozillaMach rec { pname = "firefox-esr-102"; - version = "102.11.0esr"; + version = "102.12.0esr"; applicationName = "Mozilla Firefox ESR"; src = fetchurl { url = "mirror://mozilla/firefox/releases/${version}/source/firefox-${version}.source.tar.xz"; - sha512 = "fdfed404c87f33001c0ab50f9899fa80c897fac645be8ed832e426f412aafbf1468b1c8301bad463b3f5535b6d6f2005a96a748b6e2d6bf5afbc3b5bc10983d6"; + sha512 = "2a85cf1e1c83a862c2886a63dcf3e3e8bca9dd3ed72c5d0223db52387fff3796bc0dcbb508adb8c10a30729f20554c5aac37f8ad045b0088a593d28e39d77fe5"; }; meta = { diff --git a/pkgs/applications/networking/browsers/lagrange/default.nix b/pkgs/applications/networking/browsers/lagrange/default.nix index 14f80efa63999..8c1fad04852db 100644 --- a/pkgs/applications/networking/browsers/lagrange/default.nix +++ b/pkgs/applications/networking/browsers/lagrange/default.nix @@ -17,13 +17,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "lagrange"; - version = "1.16.1"; + version = "1.16.3"; src = fetchFromGitHub { owner = "skyjake"; repo = "lagrange"; rev = "v${finalAttrs.version}"; - hash = "sha256-vVCKQDcL/NWeNE3tbmEUgDOBw6zxXy7IcT7IB6/paSo="; + hash = "sha256-DpgCxnwkNP2mZNYygxFLMufEijYoLr4qor0DYCmbps8="; }; nativeBuildInputs = [ cmake pkg-config zip ]; diff --git a/pkgs/applications/networking/browsers/librewolf/src.json b/pkgs/applications/networking/browsers/librewolf/src.json index cf8ac6a60fe15..f3d52071fe4f6 100644 --- a/pkgs/applications/networking/browsers/librewolf/src.json +++ b/pkgs/applications/networking/browsers/librewolf/src.json @@ -1,11 +1,11 @@ { - "packageVersion": "113.0-3", + "packageVersion": "113.0.2-1", "source": { - "rev": "113.0-3", - "sha256": "0pqjchkpdgsxdsylawsnbszjmx4aybyvlsc2a8qdnck5rpnxl1p2" + "rev": "113.0.2-1", + "sha256": "0wbs6bgcjrxjnh0wk6qz329zy0dlma0wdwb3law877y9dphilh47" }, "firefox": { - "version": "113.0", - "sha512": "96b0f0774083270f4fcce06085b177ced25ba05da7291d777f1da1d5bbad30721bc6363b76e06ccb64fc092778c8326a426a8bfdfa3cbaafd4f1169b924744a5" + "version": "113.0.2", + "sha512": "7b1ff7d547fda02901f54a2593e03598a830698192003d833e27b85db0e00571ff66e03ebd4089e76fa65b09df000cbb2542450beeabb0b310875910603e6743" } } diff --git a/pkgs/applications/networking/browsers/mullvad-browser/default.nix b/pkgs/applications/networking/browsers/mullvad-browser/default.nix index 559ca74e481b5..5a076c0bffdf8 100644 --- a/pkgs/applications/networking/browsers/mullvad-browser/default.nix +++ b/pkgs/applications/networking/browsers/mullvad-browser/default.nix @@ -6,6 +6,7 @@ , makeWrapper , writeText , wrapGAppsHook +, callPackage # Common run-time dependencies , zlib @@ -79,7 +80,7 @@ let version = "12.0.6"; - srcs = { + sources = { x86_64-linux = fetchurl { url = "https://cdn.mullvad.net/browser/${version}/mullvad-browser-linux64-${version}_ALL.tar.xz"; hash = "sha256-XE6HFU38FhnikxGHRHxIGS3Z3Y2JNWH0yq2NejqbROI="; @@ -103,7 +104,7 @@ stdenv.mkDerivation rec { pname = "mullvad-browser"; inherit version; - src = srcs.${stdenv.hostPlatform.system} or (throw "unsupported system: ${stdenv.hostPlatform.system}"); + src = sources.${stdenv.hostPlatform.system} or (throw "unsupported system: ${stdenv.hostPlatform.system}"); nativeBuildInputs = [ copyDesktopItems makeWrapper wrapGAppsHook ]; @@ -219,10 +220,19 @@ stdenv.mkDerivation rec { runHook postInstall ''; + passthru = { + inherit sources; + updateScript = callPackage ../tor-browser-bundle-bin/update.nix { + inherit pname version meta; + baseUrl = "https://cdn.mullvad.net/browser/"; + prefix = "mullvad-browser-"; + }; + }; + meta = with lib; { description = "Privacy-focused browser made in a collaboration between The Tor Project and Mullvad"; homepage = "https://mullvad.net/en/browser"; - platforms = attrNames srcs; + platforms = attrNames sources; maintainers = with maintainers; [ felschr ]; # MPL2.0+, GPL+, &c. While it's not entirely clear whether # the compound is "libre" in a strict sense (some components place certain diff --git a/pkgs/applications/networking/browsers/opera/default.nix b/pkgs/applications/networking/browsers/opera/default.nix index aff843adb77c3..2bb9a8be351fd 100644 --- a/pkgs/applications/networking/browsers/opera/default.nix +++ b/pkgs/applications/networking/browsers/opera/default.nix @@ -51,11 +51,11 @@ let in stdenv.mkDerivation rec { pname = "opera"; - version = "98.0.4759.39"; + version = "99.0.4788.31"; src = fetchurl { url = "${mirror}/${version}/linux/${pname}-stable_${version}_amd64.deb"; - hash = "sha256-3HVgEOscds+VBn9ajmkRnPdqNi9lLItJrb3uRH6L96Q="; + hash = "sha256-73A47Yl454ZyOkglLvnp10zjoE1bf8v5tm4Rng3UBac="; }; unpackPhase = "dpkg-deb -x $src ."; diff --git a/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix b/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix index 9166dfde660b6..02186cc8ea2c7 100644 --- a/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix +++ b/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix @@ -2,6 +2,7 @@ , fetchurl , makeDesktopItem , writeText +, callPackage # Common run-time dependencies , zlib @@ -92,7 +93,7 @@ let lang = "ALL"; - srcs = { + sources = { x86_64-linux = fetchurl { urls = [ "https://dist.torproject.org/torbrowser/${version}/tor-browser-linux64-${version}_${lang}.tar.xz" @@ -131,7 +132,7 @@ stdenv.mkDerivation rec { pname = "tor-browser-bundle-bin"; inherit version; - src = srcs.${stdenv.hostPlatform.system} or (throw "unsupported system: ${stdenv.hostPlatform.system}"); + src = sources.${stdenv.hostPlatform.system} or (throw "unsupported system: ${stdenv.hostPlatform.system}"); preferLocalBuild = true; allowSubstitutes = false; @@ -447,6 +448,13 @@ stdenv.mkDerivation rec { runHook postInstall ''; + passthru = { + inherit sources; + updateScript = callPackage ./update.nix { + inherit pname version meta; + }; + }; + meta = with lib; { description = "Tor Browser Bundle built by torproject.org"; longDescription = '' @@ -460,7 +468,7 @@ stdenv.mkDerivation rec { ''; homepage = "https://www.torproject.org/"; changelog = "https://gitweb.torproject.org/builders/tor-browser-build.git/plain/projects/tor-browser/Bundle-Data/Docs/ChangeLog.txt?h=maint-${version}"; - platforms = attrNames srcs; + platforms = attrNames sources; maintainers = with maintainers; [ offline matejc thoughtpolice joachifm hax404 KarlJoad ]; mainProgram = "tor-browser"; # MPL2.0+, GPL+, &c. While it's not entirely clear whether diff --git a/pkgs/applications/networking/browsers/tor-browser-bundle-bin/update.nix b/pkgs/applications/networking/browsers/tor-browser-bundle-bin/update.nix new file mode 100644 index 0000000000000..f169bd3c4efa1 --- /dev/null +++ b/pkgs/applications/networking/browsers/tor-browser-bundle-bin/update.nix @@ -0,0 +1,62 @@ +{ lib +, writeShellScript +, coreutils +, gnused +, gnugrep +, curl +, gnupg +, nix +, common-updater-scripts + +# options +, pname +, version +, meta +, baseUrl ? "https://dist.torproject.org/torbrowser/" +# prefix used to match published archive +, prefix ? "tor-browser-" +# suffix used to match published archive +, suffix ? "_ALL.tar.xz" +}: + +writeShellScript "update-${pname}" '' + PATH="${lib.makeBinPath [ coreutils curl gnugrep gnused gnupg nix common-updater-scripts ]}" + set -euo pipefail + + trap + + url=${baseUrl} + version=$(curl -s $url \ + | sed -rne 's,^.*href="([0-9]+(\.[0-9]+)*)/".*,\1,p' \ + | sort --version-sort | tail -1) + + if [[ "${version}" = "$version" ]]; then + echo "The new version same as the old version." + exit 0 + fi + + HOME=$(mktemp -d) + export GNUPGHOME=$(mktemp -d) + trap 'rm -rf "$HOME" "$GNUPGHOME"' EXIT + + gpg --auto-key-locate nodefault,wkd --locate-keys torbrowser@torproject.org + gpg --output $HOME/tor.keyring --export 0xEF6E286DDA85EA2A4BA7DE684E2C6E8793298290 + + curl --silent --show-error --fail -o $HOME/shasums "$url$version/sha256sums-signed-build.txt" + curl --silent --show-error --fail -o $HOME/shasums.asc "$url$version/sha256sums-signed-build.txt.asc" + gpgv --keyring=$HOME/tor.keyring $HOME/shasums.asc $HOME/shasums + + declare -A platforms=( + ['x86_64-linux']='linux64' + ['i686-linux']='linux32' + ) + + for platform in ${lib.escapeShellArgs meta.platforms}; do + arch="''${platforms[$platform]}" + sha256=$(cat "$HOME/shasums" | grep "${prefix}""$arch-$version""${suffix}" | cut -d" " -f1) + hash=$(nix hash to-sri --type sha256 "$sha256") + + update-source-version "${pname}" "0" "sha256-${lib.fakeSha256}" --source-key="sources.$platform" + update-source-version "${pname}" "$version" "$hash" --source-key="sources.$platform" + done +'' diff --git a/pkgs/applications/networking/browsers/vivaldi/default.nix b/pkgs/applications/networking/browsers/vivaldi/default.nix index 551f7472d9118..7f9d43122f25a 100644 --- a/pkgs/applications/networking/browsers/vivaldi/default.nix +++ b/pkgs/applications/networking/browsers/vivaldi/default.nix @@ -23,7 +23,7 @@ let vivaldiName = if isSnapshot then "vivaldi-snapshot" else "vivaldi"; in stdenv.mkDerivation rec { pname = "vivaldi"; - version = "6.0.2979.18"; + version = "6.0.2979.22"; suffix = { aarch64-linux = "arm64"; @@ -33,8 +33,8 @@ in stdenv.mkDerivation rec { src = fetchurl { url = "https://downloads.vivaldi.com/${branch}/vivaldi-${branch}_${version}-1_${suffix}.deb"; hash = { - aarch64-linux = "sha256-S3b0mmWsQhWDKPz34Gzb50q+wAURAFNEt6IvCqo8CMs="; - x86_64-linux = "sha256-uqhXL7kndmGoOOalyQ6mVxRB3k8L11UJzADCnNakj64="; + aarch64-linux = "sha256-x7wBbd7BdurnWGFeHD5kYb5t0/zGEXQaUwbHnNA4iME="; + x86_64-linux = "sha256-uN2nBWlullxpOZP2PzVCwKcNmO9XmDS3WiFOcp0dOqg="; }.${stdenv.hostPlatform.system} or (throw "Unsupported system: ${stdenv.hostPlatform.system}"); }; diff --git a/pkgs/applications/networking/cloudflared/default.nix b/pkgs/applications/networking/cloudflared/default.nix index aeca482b53f0c..4fb5779f0bae3 100644 --- a/pkgs/applications/networking/cloudflared/default.nix +++ b/pkgs/applications/networking/cloudflared/default.nix @@ -7,13 +7,13 @@ buildGoModule rec { pname = "cloudflared"; - version = "2023.5.0"; + version = "2023.5.1"; src = fetchFromGitHub { owner = "cloudflare"; repo = "cloudflared"; rev = "refs/tags/${version}"; - hash = "sha256-0zUKlacB6aTj0UQ8dIQSU8F6SvVOTAU/GdbUqbJ8okI="; + hash = "sha256-Pt/iyBMAHMNxN92UAXPNoVXh8kOGdD5+JGZlXEioByY="; }; vendorHash = null; diff --git a/pkgs/applications/networking/cluster/calico/default.nix b/pkgs/applications/networking/cluster/calico/default.nix index a4cc193a88147..e1ae76735b154 100644 --- a/pkgs/applications/networking/cluster/calico/default.nix +++ b/pkgs/applications/networking/cluster/calico/default.nix @@ -2,16 +2,16 @@ builtins.mapAttrs (pname: { doCheck ? true, mainProgram ? pname, subPackages }: buildGoModule rec { inherit pname; - version = "3.25.1"; + version = "3.26.0"; src = fetchFromGitHub { owner = "projectcalico"; repo = "calico"; rev = "v${version}"; - hash = "sha256-msXTukje7tS8rovhbZs8CBsfIiDOCx6wkWHoDdhxK+8="; + hash = "sha256-1wAFdzIReyL+mfuPKQdPrTjLmiGWoFCxtnT2ftBUlU0="; }; - vendorHash = "sha256-aJdzizXtW1wI9ZdQVTW8RyGFTXDdtLxpZ4oxXP/0gP0="; + vendorHash = "sha256-epmXf78DMHnyrAkf0V4wpFsfGvd8Hm+yXB9ODJDljys="; inherit doCheck subPackages; diff --git a/pkgs/applications/networking/cluster/k0sctl/default.nix b/pkgs/applications/networking/cluster/k0sctl/default.nix index 986832658825e..8995ace0125a3 100644 --- a/pkgs/applications/networking/cluster/k0sctl/default.nix +++ b/pkgs/applications/networking/cluster/k0sctl/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "k0sctl"; - version = "0.15.0"; + version = "0.15.1"; src = fetchFromGitHub { owner = "k0sproject"; repo = pname; rev = "v${version}"; - sha256 = "sha256-i/XgEPuYNxn10eOXfF+X33oLlkO9r6daeygZcSdcicQ="; + sha256 = "sha256-80AmGc3SdniKayvviVoItrj8v+3m1sAJXSjoRJzw7mE="; }; - vendorSha256 = "sha256-RTC2AEDzSafvJT/vuPjzs25PhuzBiPb32an/a/wpY04="; + vendorSha256 = "sha256-K4/sIHWVe1Wj8LJgrqfoOg1hHXvH3HEgU5vq82tzMSk="; ldflags = [ "-s" diff --git a/pkgs/applications/networking/cluster/k8sgpt/default.nix b/pkgs/applications/networking/cluster/k8sgpt/default.nix index a723e51d91b7c..d0f03cf486ee8 100644 --- a/pkgs/applications/networking/cluster/k8sgpt/default.nix +++ b/pkgs/applications/networking/cluster/k8sgpt/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "k8sgpt"; - version = "0.3.5"; + version = "0.3.6"; src = fetchFromGitHub { owner = "k8sgpt-ai"; repo = "k8sgpt"; rev = "v${version}"; - hash = "sha256-AUUcC9S1+83ZlOH/LEG+QXstxpr8949JbqFMF9hIiVE="; + hash = "sha256-GAEAl59bzCffsh0XYa61R/AwwoGyFfG0M1m1U2aQiis="; }; - vendorHash = "sha256-tXLt18ryxO9Q7E/MJWDlZy1gmxnMauqfcbmRdF9uUt8="; + vendorHash = "sha256-g0Lgu0aC25+/MYoRKMqTN8Iu8j/KA4G1DBjbhOfPpjg="; CGO_ENABLED = 0; diff --git a/pkgs/applications/networking/cluster/karmor/default.nix b/pkgs/applications/networking/cluster/karmor/default.nix index 304ea70963cb7..481ac09c751eb 100644 --- a/pkgs/applications/networking/cluster/karmor/default.nix +++ b/pkgs/applications/networking/cluster/karmor/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "karmor"; - version = "0.13.1"; + version = "0.13.2"; src = fetchFromGitHub { owner = "kubearmor"; repo = "kubearmor-client"; rev = "v${version}"; - hash = "sha256-HSMyGA4S8VjEA2u4TbmH+qS5ZCsWBg+aTNhAbt4S6yY="; + hash = "sha256-IKvWS1c7u1a3Fm2+uyhhgyuM680ZYiq9Xq2Tg/Y6HJo="; }; - vendorHash = "sha256-Rxm96sgdZFKuyQzT76WJHvzEM0tG2rvqnl7+umoFIMY="; + vendorHash = "sha256-xBtKKq6oUjazRac1FozRXBNRv1rFXYAulWu0Rs8ETvQ="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/applications/networking/cluster/kluctl/default.nix b/pkgs/applications/networking/cluster/kluctl/default.nix index 04d1729878b46..8e1c938d776d9 100644 --- a/pkgs/applications/networking/cluster/kluctl/default.nix +++ b/pkgs/applications/networking/cluster/kluctl/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "kluctl"; - version = "2.19.4"; + version = "2.20.4"; src = fetchFromGitHub { owner = "kluctl"; repo = "kluctl"; rev = "v${version}"; - hash = "sha256-q/LWUTaf0PlNGhUZZIvMTjILmrYAO+jQGrUCqBkbDVM="; + hash = "sha256-Z3tXfzbVs0FWTsi6vbM6BNQBLeCseWn4yBR5PNeRz2s="; }; - vendorHash = "sha256-AywaABegaM32HnPN4b3xnnG/sggr1Z1Jubfbi1VA1k8="; + vendorHash = "sha256-z0eiWU5CFMfK6fz+LUtxtSP/MAuVn7iOHB+A7Uv2OQY="; ldflags = [ "-s" "-w" "-X main.version=v${version}" ]; @@ -23,6 +23,10 @@ buildGoModule rec { version = "v${version}"; }; + postInstall = '' + mv $out/bin/{cmd,kluctl} + ''; + meta = with lib; { description = "The missing glue to put together large Kubernetes deployments"; homepage = "https://kluctl.io/"; diff --git a/pkgs/applications/networking/cluster/kubectl-images/default.nix b/pkgs/applications/networking/cluster/kubectl-images/default.nix index 87d9b36f7b840..663eac9e13b63 100644 --- a/pkgs/applications/networking/cluster/kubectl-images/default.nix +++ b/pkgs/applications/networking/cluster/kubectl-images/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "kubectl-images"; - version = "0.5.2"; + version = "0.6.1"; src = fetchFromGitHub { owner = "chenjiandongx"; repo = pname; rev = "v${version}"; - sha256 = "sha256-aDWtLTnMQklTU6X6LF0oBuh1317I5/kiEZVePgJjIdU"; + sha256 = "sha256-Zs9ok5jDhNeEw+dbER0cpLYn41uXwHNx0w0t1A3CSlI="; }; - vendorSha256 = "sha256-FxaOOFwDf3LNREOlA7frqhDXzc91LC3uJev3kzLDEy8"; + vendorHash = "sha256-8zV2iZ10H5X6fkRqElfc7lOf3FhmDzR2lb3Jgyhjyio="; postInstall = '' mv $out/bin/cmd $out/bin/kubectl-images diff --git a/pkgs/applications/networking/cluster/kubedog/default.nix b/pkgs/applications/networking/cluster/kubedog/default.nix index cf858efef97ab..dc67ccc36e634 100644 --- a/pkgs/applications/networking/cluster/kubedog/default.nix +++ b/pkgs/applications/networking/cluster/kubedog/default.nix @@ -8,13 +8,13 @@ buildGoModule rec { pname = "kubedog"; - version = "0.9.11"; + version = "0.9.12"; src = fetchFromGitHub { owner = "werf"; repo = "kubedog"; rev = "v${version}"; - hash = "sha256-yHyCmUjxvMzeHpG5OqC3nAjWaiHErTXrbmS+/0Y4A7E="; + hash = "sha256-B667EnlOD0kXqkW73XXcyQwROWh5SmsM8565sjcGinI="; }; vendorHash = "sha256-OgfgCsysNtY7mZQXdmHFyJ0FqmBD3SeQdTLd5Lw3F7k="; diff --git a/pkgs/applications/networking/cluster/kubergrunt/default.nix b/pkgs/applications/networking/cluster/kubergrunt/default.nix index 5f5d6b61b460f..386327f9965ff 100644 --- a/pkgs/applications/networking/cluster/kubergrunt/default.nix +++ b/pkgs/applications/networking/cluster/kubergrunt/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "kubergrunt"; - version = "0.11.2"; + version = "0.11.3"; src = fetchFromGitHub { owner = "gruntwork-io"; repo = "kubergrunt"; rev = "v${version}"; - sha256 = "sha256-HVIPKfoAfBZH8wA2GMabhTkYxDLvP15XoZuTVSy2i8M="; + sha256 = "sha256-d88IEbsk0bwC9Mzag3UOFVcSblCjaWXhKXC8iZr6V1s="; }; vendorHash = "sha256-AUw1wJNWjpNVsjw/Hr1ZCePYWQkf1SqRVnQgi8tOFG0="; diff --git a/pkgs/applications/networking/cluster/kyverno/default.nix b/pkgs/applications/networking/cluster/kyverno/default.nix index e604eb58fceda..a4e82aae82d34 100644 --- a/pkgs/applications/networking/cluster/kyverno/default.nix +++ b/pkgs/applications/networking/cluster/kyverno/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "kyverno"; - version = "1.9.4"; + version = "1.10.0"; src = fetchFromGitHub { owner = "kyverno"; repo = "kyverno"; rev = "v${version}"; - sha256 = "sha256-rpqhDnXxbWKa1WB7WBS6Ri7XiPWv3e0evCXFSBcaD6c="; + sha256 = "sha256-Phiswg3ouIVkk1hsO0Hm5mFdcpZb403ypETrKKHOyTw="; }; ldflags = [ @@ -18,7 +18,7 @@ buildGoModule rec { "-X github.com/kyverno/kyverno/pkg/version.BuildTime=1970-01-01_00:00:00" ]; - vendorHash = "sha256-5eHLnzbjqbF8meHMfSo6NuK+SdokRkyPwoedunU2ECs="; + vendorHash = "sha256-AjfWxRwAWLX/TF1bI6Q7AUcfYhMHBgDNtKQsZSrBMn4="; subPackages = [ "cmd/cli/kubectl-kyverno" ]; diff --git a/pkgs/applications/networking/cluster/nerdctl/default.nix b/pkgs/applications/networking/cluster/nerdctl/default.nix index c42fb1b2a5cef..c7daafc971d91 100644 --- a/pkgs/applications/networking/cluster/nerdctl/default.nix +++ b/pkgs/applications/networking/cluster/nerdctl/default.nix @@ -10,16 +10,16 @@ buildGoModule rec { pname = "nerdctl"; - version = "1.3.1"; + version = "1.4.0"; src = fetchFromGitHub { owner = "containerd"; repo = pname; rev = "v${version}"; - hash = "sha256-1wqPMT8JJ29K0BcooPj7jaXMKIVlN6YvFwneYnqaeDk="; + hash = "sha256-30T5HXQz57Uwgly6HcMroEC/qwynm6nB4B3uwDC2WHo="; }; - vendorHash = "sha256-ix18Mi4a1kW7C6rcwwFc6TDwzs3vYxNz3M3d5pD8l6c="; + vendorHash = "sha256-zsIRdPNoUrlN2FWSlHN8+8yi74CGxW6pX8TYNHtPJ3A="; nativeBuildInputs = [ makeWrapper installShellFiles ]; diff --git a/pkgs/applications/networking/cluster/nomad/default.nix b/pkgs/applications/networking/cluster/nomad/default.nix index ce0ee37849cc0..998f7f6069a08 100644 --- a/pkgs/applications/networking/cluster/nomad/default.nix +++ b/pkgs/applications/networking/cluster/nomad/default.nix @@ -3,6 +3,7 @@ , buildGo120Module , fetchFromGitHub , nixosTests +, installShellFiles }: let @@ -23,11 +24,18 @@ let inherit sha256; }; + nativeBuildInputs = [ installShellFiles ]; + # ui: # Nomad release commits include the compiled version of the UI, but the file # is only included if we build with the ui tag. tags = [ "ui" ]; + postInstall = '' + echo "complete -C $out/bin/nomad nomad" > nomad.bash + installShellCompletion nomad.bash + ''; + meta = with lib; { homepage = "https://www.nomadproject.io/"; description = "A Distributed, Highly Available, Datacenter-Aware Scheduler"; diff --git a/pkgs/applications/networking/cluster/odo/default.nix b/pkgs/applications/networking/cluster/odo/default.nix index 10e71f806a5f6..1099c1b08195e 100644 --- a/pkgs/applications/networking/cluster/odo/default.nix +++ b/pkgs/applications/networking/cluster/odo/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "odo"; - version = "3.10.0"; + version = "3.11.0"; src = fetchFromGitHub { owner = "redhat-developer"; repo = "odo"; rev = "v${version}"; - sha256 = "sha256-J8Oiw7/jPwIoPh8erL7auSiQCRzvY7i4COPmtI3qPXY="; + sha256 = "sha256-+5oX6/J/WpJZr/o9l8TZhMJoxonnT0DeIEWffAjZYww="; }; vendorHash = null; diff --git a/pkgs/applications/networking/cluster/pachyderm/default.nix b/pkgs/applications/networking/cluster/pachyderm/default.nix index f0333e3b5fe18..b21b50397e9e8 100644 --- a/pkgs/applications/networking/cluster/pachyderm/default.nix +++ b/pkgs/applications/networking/cluster/pachyderm/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "pachyderm"; - version = "2.6.0"; + version = "2.6.1"; src = fetchFromGitHub { owner = "pachyderm"; repo = "pachyderm"; rev = "v${version}"; - hash = "sha256-QWlNDnhcFXfCtX4J0V/hq6nFN0RjzYv29mI2zE2fyFo="; + hash = "sha256-C3qzf/+A1pYTYR3FMtUuqZNU+j8oOHSBLDfyuWYCh5I="; }; vendorHash = "sha256-3EG9d4ERaWuHaKFt0KFCOKIgTdrL7HZTO+GSi2RROKY="; diff --git a/pkgs/applications/networking/cluster/pluto/default.nix b/pkgs/applications/networking/cluster/pluto/default.nix index 809d234a8a774..7ade0e85e795a 100644 --- a/pkgs/applications/networking/cluster/pluto/default.nix +++ b/pkgs/applications/networking/cluster/pluto/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "pluto"; - version = "5.16.3"; + version = "5.16.4"; src = fetchFromGitHub { owner = "FairwindsOps"; repo = "pluto"; rev = "v${version}"; - sha256 = "sha256-TlXwjgk+sT5lvswbDKjun0PhkfqDfk1IzGZ9NCMdw9s="; + sha256 = "sha256-X/ei4BXj2tuFeHt4QZQ4QI6m15emOMjSrK+GxAqRMFM="; }; - vendorHash = "sha256-ahneuZExefFKGYDxa+F8IhKPDjw8+kdZ5Hj+k1BDxcU="; + vendorHash = "sha256-okqDtxSKVLlmnm5JdCKSvRZkXTsghi/L5R9TX10WWjY="; ldflags = [ "-w" "-s" diff --git a/pkgs/applications/networking/cluster/roxctl/default.nix b/pkgs/applications/networking/cluster/roxctl/default.nix index da241131f9961..16622bb5da5af 100644 --- a/pkgs/applications/networking/cluster/roxctl/default.nix +++ b/pkgs/applications/networking/cluster/roxctl/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "roxctl"; - version = "4.0.1"; + version = "4.0.2"; src = fetchFromGitHub { owner = "stackrox"; repo = "stackrox"; rev = version; - sha256 = "sha256-9nLu7/4UfIQMje1XIfiPaPkGzdQbDhgBKYq/L2TfaS0="; + sha256 = "sha256-yMAQEgQPySz5xvbnzO3omiqEajDjSqFt/UroJ04tUY8="; }; vendorHash = "sha256-kv5kNFFw57ZuNgwNMucmCPIwaAhpzT0hs2K1B65WxpU="; diff --git a/pkgs/applications/networking/cluster/talosctl/default.nix b/pkgs/applications/networking/cluster/talosctl/default.nix index bd738bd67449a..fdcf6da4b4b61 100644 --- a/pkgs/applications/networking/cluster/talosctl/default.nix +++ b/pkgs/applications/networking/cluster/talosctl/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "talosctl"; - version = "1.4.4"; + version = "1.4.5"; src = fetchFromGitHub { owner = "siderolabs"; repo = "talos"; rev = "v${version}"; - hash = "sha256-BjNJIHPFAytiZIrHPcEuxYCXlp35kMR3OA3KXOdBj8w="; + hash = "sha256-pgWNmjIyRWsshuP+GGc/Kxd32DIoHphwYvBIx2hBWZg="; }; - vendorHash = "sha256-btZHQ0sqgbMm0WWswY9ChNNtXX/xedv/d0BrO03MBns="; + vendorHash = "sha256-Fr4yfwRdhwH1UHAb4rQ74rzAGjIyEX4+0lFujUs8Tos="; ldflags = [ "-s" "-w" ]; diff --git a/pkgs/applications/networking/cluster/terraform-providers/providers.json b/pkgs/applications/networking/cluster/terraform-providers/providers.json index 2cf3dba2ba28a..b9077771f9071 100644 --- a/pkgs/applications/networking/cluster/terraform-providers/providers.json +++ b/pkgs/applications/networking/cluster/terraform-providers/providers.json @@ -1,10 +1,10 @@ { "aci": { - "hash": "sha256-OwQzr0Rt9fjbGfJPDezrh/j4hLwgq8ldRgTX3rL/ddY=", + "hash": "sha256-EmYgUWRZoIJ+wZIe4E7MlRep+uVveCbeBNDBgG7ryr8=", "homepage": "https://registry.terraform.io/providers/CiscoDevNet/aci", "owner": "CiscoDevNet", "repo": "terraform-provider-aci", - "rev": "v2.7.0", + "rev": "v2.8.0", "spdx": "MPL-2.0", "vendorHash": null }, @@ -28,29 +28,29 @@ "vendorHash": "sha256-jK7JuARpoxq7hvq5+vTtUwcYot0YqlOZdtDwq4IqKvk=" }, "aiven": { - "hash": "sha256-adBkV3Gg75M0336GDzzxN3ONt24/KBKPC2EDDFRB7JY=", + "hash": "sha256-kHCgl4osr0L9GR9Fv3u8dUs+ko82vxjE6dmJ9QZoQsE=", "homepage": "https://registry.terraform.io/providers/aiven/aiven", "owner": "aiven", "repo": "terraform-provider-aiven", - "rev": "v4.4.0", + "rev": "v4.4.1", "spdx": "MIT", - "vendorHash": "sha256-5m2ZZ/tuLz8zTt8B1TiokDZeQ9qJYeaVEhqMU04zV2s=" + "vendorHash": "sha256-phcV7ZQ/7umtJMp0ozGV0jpYizlvmNq3Eo/wZ7tfNec=" }, "akamai": { - "hash": "sha256-P/5tLtcPqhf48DqqMKKNCOrvT+I60N9rC1W/4RdFXqY=", + "hash": "sha256-RIJarmJZHDl5XhXLnr1igiBq9Uu9/2N+vhosPFTs2tg=", "homepage": "https://registry.terraform.io/providers/akamai/akamai", "owner": "akamai", "repo": "terraform-provider-akamai", - "rev": "v3.6.0", + "rev": "v4.1.0", "spdx": "MPL-2.0", - "vendorHash": "sha256-nwl8GvS/hc07xSzM+wEwOAkT9oQcAuguHaEcM1nWjwg=" + "vendorHash": "sha256-Z7HlUJ5VuQ7rBhoprmvS6HwNZ53iUoBnfXzKTV43bzE=" }, "alicloud": { - "hash": "sha256-mwYwZObU2WadA1X3EiCVh5T1iHYfPzluEHSUZtrMz98=", + "hash": "sha256-fmVu1YYHKy6cW5/CTyYcdvk7Srhpbnz0CGk6GAMRKCU=", "homepage": "https://registry.terraform.io/providers/aliyun/alicloud", "owner": "aliyun", "repo": "terraform-provider-alicloud", - "rev": "v1.205.0", + "rev": "v1.206.0", "spdx": "MPL-2.0", "vendorHash": null }, @@ -110,13 +110,13 @@ "vendorHash": null }, "aws": { - "hash": "sha256-eHU3dsu/aJ72BTwe4CAWhf29ZueUhyg10Ncs9yUxi80=", + "hash": "sha256-DbBS2gEUqG3YjGfLIj3YvQUCTyp+nRH7d4htTUkUNHQ=", "homepage": "https://registry.terraform.io/providers/hashicorp/aws", "owner": "hashicorp", "repo": "terraform-provider-aws", - "rev": "v5.0.1", + "rev": "v5.1.0", "spdx": "MPL-2.0", - "vendorHash": "sha256-53BHSeRBgnT5LuSuTUA5R/bbeozd2gOxsXd/2tlrbYU=" + "vendorHash": "sha256-0LH3zYIdqgxpKtxQBEuTxRivHf0yvmwUTUo+vAAmdaY=" }, "azuread": { "hash": "sha256-wBNS2a6O1QJgssbAWhSRSfxaVZ35zgT/qNdpE++NQ8U=", @@ -128,11 +128,11 @@ "vendorHash": null }, "azurerm": { - "hash": "sha256-GVxIr57y5tlOrZYtu09FI0IYG2cLkHkYMMofdqdCans=", + "hash": "sha256-Zyv4il6co+TcMkN+Hl7znGT1uN5Xohe8zFv5ghkeZP8=", "homepage": "https://registry.terraform.io/providers/hashicorp/azurerm", "owner": "hashicorp", "repo": "terraform-provider-azurerm", - "rev": "v3.58.0", + "rev": "v3.59.0", "spdx": "MPL-2.0", "vendorHash": null }, @@ -155,11 +155,11 @@ "vendorHash": null }, "bigip": { - "hash": "sha256-SGwCEcPNxWw7Bsa4SQ1uWJ1rH/PZlkAMwvDy/fnXU3w=", + "hash": "sha256-oKYBeJsFhxLCFLsVc7p0TFGIVYj2xKPC3+EfNedHuu4=", "homepage": "https://registry.terraform.io/providers/F5Networks/bigip", "owner": "F5Networks", "repo": "terraform-provider-bigip", - "rev": "v1.17.1", + "rev": "v1.18.0", "spdx": "MPL-2.0", "vendorHash": null }, @@ -182,22 +182,22 @@ "vendorHash": "sha256-jOscYbwZ8m4smGiAy2vNhPMTAUnINkpuVRQ8E6LpWVw=" }, "buildkite": { - "hash": "sha256-5R3aX0tzUnewsYguHlelYXn1JrfowrOCaqYtfvrnoSE=", + "hash": "sha256-PpxWViERqAAumgyo9FhcIXJ5WfPJVn7hELaf04N61Ok=", "homepage": "https://registry.terraform.io/providers/buildkite/buildkite", "owner": "buildkite", "repo": "terraform-provider-buildkite", - "rev": "v0.17.1", + "rev": "v0.18.0", "spdx": "MIT", - "vendorHash": "sha256-ZXjmR1maiiLeWipXGOAGfLEuot9TsrzAX4EPRNQ5Gbo=" + "vendorHash": "sha256-ZWC6CtAheuHZtLc8BolrniRPNpKkG0VR3UY5bVUtrSk=" }, "checkly": { - "hash": "sha256-tdimESlkfRO/kdA6JOX72vQNXFLJZ9VKwPRxsJo5WFI=", + "hash": "sha256-ZJQdH1ot/ygnM4Q2rihzHFH67ge6zfVrPASgV0lUs34=", "homepage": "https://registry.terraform.io/providers/checkly/checkly", "owner": "checkly", "repo": "terraform-provider-checkly", - "rev": "v1.6.5", + "rev": "v1.6.6", "spdx": null, - "vendorHash": "sha256-AFmQU1+dh6HPYaTLX54egmP57mITJ/lVQq8SJ9+vXLY=" + "vendorHash": "sha256-feuFwaV463o+7jpv2jl2R4Bm9Tv2w4R03/0ne0kImIU=" }, "ciscoasa": { "hash": "sha256-xzc44FEy2MPo51Faq/VFwg411JK9e0kQucpt0vdN8yg=", @@ -218,13 +218,13 @@ "vendorHash": "sha256-qIgr+ynaNSfNx1iW5RJrNHvEnlr46dBzIi+5IXYn+3Q=" }, "cloudflare": { - "hash": "sha256-vVVwWZAkTzEQ+toZOblEoq1Xg4zC4zZD4Eoi1ocU6Rc=", + "hash": "sha256-+tTBNPTZjzvI1XYo8sPQumSJftvRkh+CRCr+S+Z4HNM=", "homepage": "https://registry.terraform.io/providers/cloudflare/cloudflare", "owner": "cloudflare", "repo": "terraform-provider-cloudflare", - "rev": "v4.6.0", + "rev": "v4.7.1", "spdx": "MPL-2.0", - "vendorHash": "sha256-NuvPhARQucbVEmO6iLWPZDe9VF/xROCbmC7jM7srUmE=" + "vendorHash": "sha256-jAdeCVr1hWVPwWFbxiaVP1aF8LeJFi2ua2vM9r65mKI=" }, "cloudfoundry": { "hash": "sha256-SFA0rG80BWaJHwvAWEugdVd3nR+YGflyYONOuoS++P8=", @@ -282,13 +282,13 @@ "vendorHash": "sha256-ZCMSmOCPEMxCSpl3DjIUGPj1W/KNJgyjtHpmQ19JquA=" }, "datadog": { - "hash": "sha256-bay1hBIfgYBqY1SSpbezPMW4L6ZpJIYfH/5up13wgUo=", + "hash": "sha256-1vGpPvsy3SztlreNy0kcpTFtRaeq34G3B+Zo3obdHIw=", "homepage": "https://registry.terraform.io/providers/DataDog/datadog", "owner": "DataDog", "repo": "terraform-provider-datadog", - "rev": "v3.25.0", + "rev": "v3.26.0", "spdx": "MPL-2.0", - "vendorHash": "sha256-0KuoVcM/pvXMxdLL1HO6XsVTUOfQylzl6yGfQF6HdvQ=" + "vendorHash": "sha256-w0UcFUlpS6j/q2xKCFghgL+kcy1zBVvEqQjigtzzfks=" }, "dhall": { "hash": "sha256-K0j90YAzYqdyJD4aofyxAJF9QBYNMbhSVm/s1GvWuJ4=", @@ -354,13 +354,13 @@ "vendorHash": "sha256-oVTanZpCWs05HwyIKW2ajiBPz1HXOFzBAt5Us+EtTRw=" }, "equinix": { - "hash": "sha256-mMkwJyZL1ll26ZfJ7Whk/upyfh1xNl+5S1mtVM1ZMuM=", + "hash": "sha256-mS2o0AyOG2Z3tadv036we2J10S1JvNz3gdoykIjCSq0=", "homepage": "https://registry.terraform.io/providers/equinix/equinix", "owner": "equinix", "repo": "terraform-provider-equinix", - "rev": "v1.14.2", + "rev": "v1.14.3", "spdx": "MIT", - "vendorHash": "sha256-rJev48aS0nd8DRWmUN4i0LgDYvfjdfoO67N6AiWeg+k=" + "vendorHash": "sha256-2iVEcpESaEdgTcmlQ6Wynuxv8RmPFlhF+BVDSjHmclM=" }, "exoscale": { "hash": "sha256-wWGqEwo8dMD+2UeaHSzoo+uXrsHNZRDrGhgneACScPM=", @@ -390,13 +390,13 @@ "vendorHash": null }, "flexibleengine": { - "hash": "sha256-TZR/zXgecHUbaD9Yb83HvBwWauDtHDsnEcSZYFmY5y4=", + "hash": "sha256-WO99FOJ6zZ0GPxoYwH55Ul0HTktH2UZ3yWRrwjk3qA4=", "homepage": "https://registry.terraform.io/providers/FlexibleEngineCloud/flexibleengine", "owner": "FlexibleEngineCloud", "repo": "terraform-provider-flexibleengine", - "rev": "v1.37.0", + "rev": "v1.38.0", "spdx": "MPL-2.0", - "vendorHash": "sha256-HcyUGKbgj322fU7keN/lBEn6UJhV3QXScBJHZHJkCII=" + "vendorHash": "sha256-DSdE0CkAIJje71/S64no9fMJMUhAnFiK3lWewvcyE14=" }, "fortios": { "deleteVendor": true, @@ -419,11 +419,11 @@ "vendorHash": "sha256-uWTY8cFztXFrQQ7GW6/R+x9M6vHmsb934ldq+oeW5vk=" }, "github": { - "hash": "sha256-f/9Dn5jsh+aWpfmSeICQQUOuD9A6A4/1pMb+Q19HDLI=", + "hash": "sha256-DEylIY8bU0obeeAUYwNx1f5mZwQpmhILdp+940P9z78=", "homepage": "https://registry.terraform.io/providers/integrations/github", "owner": "integrations", "repo": "terraform-provider-github", - "rev": "v5.25.1", + "rev": "v5.26.0", "spdx": "MIT", "vendorHash": null }, @@ -437,22 +437,22 @@ "vendorHash": "sha256-KD9X7EOH1btgLtssuz1FFOGtmfNao8HBcKJDty1wtpY=" }, "google": { - "hash": "sha256-lsI1hR9bhzFuepDDNKV761DXbdPJHOvm4OeHg4eVlgU=", + "hash": "sha256-emfKbO9RGX+DiBik3Hz84IqZGrCV8JBAPt2fHAu8yxc=", "homepage": "https://registry.terraform.io/providers/hashicorp/google", "owner": "hashicorp", "proxyVendor": true, "repo": "terraform-provider-google", - "rev": "v4.66.0", + "rev": "v4.68.0", "spdx": "MPL-2.0", "vendorHash": "sha256-O7lg3O54PedUEwWL34H49SvSBXuGH1l5joqEXgkew5Q=" }, "google-beta": { - "hash": "sha256-iSHTFT+AbTOn+DoaMnkw3oiU4IDMEZOsj0S5TPX8800=", + "hash": "sha256-yhaEGLdRzfSaWfdqKdeRYHj0neaBZ4WS+o8wB+Vsb7g=", "homepage": "https://registry.terraform.io/providers/hashicorp/google-beta", "owner": "hashicorp", "proxyVendor": true, "repo": "terraform-provider-google-beta", - "rev": "v4.66.0", + "rev": "v4.68.0", "spdx": "MPL-2.0", "vendorHash": "sha256-O7lg3O54PedUEwWL34H49SvSBXuGH1l5joqEXgkew5Q=" }, @@ -493,13 +493,13 @@ "vendorHash": "sha256-qa6DUmzL+JB/WTJM+a5VDvBCsrbt8gq/LeqzdAHLm0Q=" }, "helm": { - "hash": "sha256-X9keFjAmV86F/8ktxiv/VrnkHOazP9e/aOC9aRw1A48=", + "hash": "sha256-mGrQ5YKNsv1+Vkan5ohMXnTYofhCQPuTFjemXF/g+tA=", "homepage": "https://registry.terraform.io/providers/hashicorp/helm", "owner": "hashicorp", "repo": "terraform-provider-helm", - 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"rev": "v2.3.0", + "rev": "v2.4.0", "spdx": "MPL-2.0", "vendorHash": null }, @@ -620,13 +620,13 @@ "vendorHash": "sha256-cLp8w0UcO9Hork/GTLOGCcSvfaYEIKl5so3/0ELm79Y=" }, "keycloak": { - "hash": "sha256-pp/l9lVB2+bGrp/cUVt9C3R7PenqKegqm829WhTKsWk=", + "hash": "sha256-557IxT6Zpfig7XLpWG0DahsWsgnTD7XAlIgU9CmQH5c=", "homepage": "https://registry.terraform.io/providers/mrparkers/keycloak", "owner": "mrparkers", "repo": "terraform-provider-keycloak", - "rev": "v4.2.0", + "rev": "v4.3.0", "spdx": "MIT", - "vendorHash": "sha256-UnWHUD9T4nTT6Y2UrvBIdIk9eA8l0vWJ/IpEY3PIzDU=" + "vendorHash": "sha256-GhmawLENmRuG5ZbXEZAw8pYmHn2SN2ONzfSIVEyN4U4=" }, "kubectl": { "hash": "sha256-UkUwWi7Z9cSMyZakD6JxMl+qdczAYfZQgwroCUjFIUM=", @@ -638,11 +638,11 @@ "vendorHash": "sha256-lXQHo66b9X0jZhoF+5Ix5qewQGyI82VPJ7gGzc2CHao=" }, "kubernetes": { - "hash": "sha256-B13jQTZqFb5o/GRTf4iQWUbOPhbb4uYKUy35nQrKGLI=", + "hash": "sha256-k3NObpn1/P+hDx32Wjcd5HqFKC8NFUx6gkxlRDyw/vQ=", "homepage": "https://registry.terraform.io/providers/hashicorp/kubernetes", "owner": "hashicorp", "repo": "terraform-provider-kubernetes", - "rev": "v2.20.0", + "rev": "v2.21.1", "spdx": "MPL-2.0", "vendorHash": null }, @@ -665,13 +665,13 @@ "vendorHash": "sha256-4jAJf2FC83NdH4t1l7EA26yQ0pqteWmTIyrZDJdi7fg=" }, "linode": { - "hash": "sha256-dVoITwVwvWX6gXNgNv8fpCT2d19nYN893L8CL/TvcPc=", + "hash": "sha256-wv45KDeCLQgQH7m22PM8Wm4aWGrXQd/n72bSoDkJtkE=", "homepage": "https://registry.terraform.io/providers/linode/linode", "owner": "linode", "repo": "terraform-provider-linode", - "rev": "v2.3.0", + "rev": "v2.4.0", "spdx": "MPL-2.0", - "vendorHash": "sha256-a8IjMAojj15yl1sh/6r5WJsuqzWqHeDZLEqib7xOCw0=" + "vendorHash": "sha256-mYsX74Zcs16LAjCpOa33H/Im/52uJeIPsJNOThW8/w8=" }, "linuxbox": { "hash": "sha256-MzasMVtXO7ZeZ+qEx2Z+7881fOIA0SFzSvXVHeEROtg=", @@ -764,11 +764,11 @@ "vendorHash": null }, "newrelic": { - "hash": "sha256-GTjrbA1IX2OxHDdxyTprWH/ctvjlXJUvqdxqcvDA1ug=", + "hash": "sha256-Dz+aVO6RpGcgo9LCPHFdYCiJ3ja+ftJFii5wWQm0/jc=", "homepage": "https://registry.terraform.io/providers/newrelic/newrelic", "owner": "newrelic", "repo": "terraform-provider-newrelic", - "rev": "v3.23.0", + "rev": "v3.24.0", "spdx": "MPL-2.0", "vendorHash": "sha256-WjiTfHs+MEc06aNstblGKvd3cTj49JF1fvm+tuR2WH8=" }, @@ -782,13 +782,13 @@ "vendorHash": "sha256-jnZ7LzKgyPVCnYoWp+nDeQy2w91sBVX43KjInzqRWqc=" }, "ns1": { - "hash": "sha256-F7nKtDlVnW7jDPTeszYv9aYMAnHo2/k+MxsXdjghS88=", + "hash": "sha256-IVKxvkps7cDE/l06MXRtRNasbhEpxhkxa7cDQP/6XYQ=", "homepage": "https://registry.terraform.io/providers/ns1-terraform/ns1", "owner": "ns1-terraform", "repo": "terraform-provider-ns1", - "rev": "v2.0.2", + "rev": "v2.0.3", "spdx": "MPL-2.0", - "vendorHash": "sha256-dGHT3mq5a+3KhNZQkYZ+HYrqxR9YT7Yn64UkmE0vz6M=" + "vendorHash": "sha256-Tyf5byrkB1tB4JrOlLpUdFGVcwvUN7SylVl2OhX3jWY=" }, "null": { "hash": "sha256-ExXDbAXMVCTZBlYmi4kD/7JFB1fCFAoPL637+1N6rEI=", @@ -810,11 +810,11 @@ "vendorHash": "sha256-LRIfxQGwG988HE5fftGl6JmBG7tTknvmgpm4Fu1NbWI=" }, "oci": { - "hash": "sha256-RMWKzIsZg9h5COgt1IlpmQQGDpFHwH4ugPZmMULcxgg=", + "hash": "sha256-Sd8okjpxx1rQRmlql5HQ1wjWligZTArJ2unT3Tv02m8=", "homepage": "https://registry.terraform.io/providers/oracle/oci", "owner": "oracle", "repo": "terraform-provider-oci", - "rev": "v4.122.0", + "rev": "v5.0.0", "spdx": "MPL-2.0", "vendorHash": null }, @@ -837,11 +837,11 @@ "vendorHash": null }, "opennebula": { - "hash": "sha256-r5evkpYnT2foc9ucHVkalm0qVO8UCoLhoc9ro/TerRI=", + "hash": "sha256-bWmSXlNgPOhzNFodYAzLE1theDntCks3ywtruRbCcYc=", "homepage": "https://registry.terraform.io/providers/OpenNebula/opennebula", "owner": "OpenNebula", "repo": "terraform-provider-opennebula", - "rev": "v1.2.1", + "rev": "v1.2.2", "spdx": "MPL-2.0", "vendorHash": "sha256-W7UGOtyFsIMXPqFDnde2XlzU7klR7Fs00mSuJ9ID20A=" }, @@ -855,13 +855,13 @@ "vendorHash": "sha256-62q67aaOZA3fQmyL8bEHB+W497bcx9Xy7kKrbkjkbaI=" }, "opentelekomcloud": { - "hash": "sha256-8Is/KtVE9eoOAk7GTsqkBe1Ppw0YpThBnj0uxQlBMuY=", + "hash": "sha256-35Xp3FfkBvdacbZ20+Z8DgwavA5XvqJknEzLM71YkXg=", "homepage": "https://registry.terraform.io/providers/opentelekomcloud/opentelekomcloud", "owner": "opentelekomcloud", "repo": "terraform-provider-opentelekomcloud", - "rev": "v1.34.4", + "rev": "v1.35.0", "spdx": "MPL-2.0", - "vendorHash": "sha256-2EuGZxHrpPwDicSrIf/Jx/c4LhOtE5HvTz9LkJ4xCSY=" + "vendorHash": "sha256-ubEoh4GUkyNAvyHCowURhvucOyFpMidxoFeqE1w2GQY=" }, "opsgenie": { "hash": "sha256-fcQChRIwxAeAdYPTYC9rPSdbrmXaBIOotF7vQhO9Sl0=", @@ -882,11 +882,11 @@ "vendorHash": null }, "pagerduty": { - "hash": "sha256-Vp4kNvG+37MR/0Es0sFxkWfl0dNc8ZIbm0VpSX416Pk=", + "hash": "sha256-nQy0LYiYoj+d8LaCRJflMwBA9obBD4XUG0oP/9nq/jY=", "homepage": "https://registry.terraform.io/providers/PagerDuty/pagerduty", "owner": "PagerDuty", "repo": "terraform-provider-pagerduty", - "rev": "v2.14.5", + "rev": "v2.15.0", "spdx": "MPL-2.0", "vendorHash": null }, @@ -963,13 +963,13 @@ "vendorHash": null }, "scaleway": { - "hash": "sha256-ZZu8rePMIuQArXI3P/S9rGxw7LU8g3qbJYFpSJ32KJQ=", + "hash": "sha256-+WNvmkQvqupSYQDlY/57nyaV6kH2wvQLsb+uAJuGaaw=", "homepage": "https://registry.terraform.io/providers/scaleway/scaleway", "owner": "scaleway", "repo": "terraform-provider-scaleway", - "rev": "v2.19.0", + "rev": "v2.20.0", "spdx": "MPL-2.0", - "vendorHash": "sha256-TTQXAX8M9w0RUDVevt4OpPB32R2GFjsvCn1j+SJgZZs=" + "vendorHash": "sha256-dSnq0iU1ANuOyTNZQfy7FRjEIL2HG2ZJFNTe6iaBe5U=" }, "secret": { "hash": "sha256-MmAnA/4SAPqLY/gYcJSTnEttQTsDd2kEdkQjQj6Bb+A=", @@ -1026,13 +1026,13 @@ "vendorHash": null }, "snowflake": { - "hash": "sha256-2eS56WAEVz1nYiYmfthharyX9giEQ/8kufAwyHCG6PM=", + "hash": "sha256-1a2zGEZgMdmH6/dBJ+19VHDMfOs7Xwd4wJ/CA/mVI3g=", "homepage": "https://registry.terraform.io/providers/Snowflake-Labs/snowflake", "owner": "Snowflake-Labs", "repo": "terraform-provider-snowflake", - "rev": "v0.64.0", + "rev": "v0.66.1", "spdx": "MIT", - "vendorHash": "sha256-lJUkSd3v8VVoOI9ywiUh7wEPyvhF9Ip2v9kJ43hCwsI=" + "vendorHash": "sha256-ZNkZ2GMSBZHz+L626VqT7pTeb8fSYkaCi84O5ggd1FM=" }, "sops": { "hash": "sha256-D1Yzs8hDimMP9y8ZRbizEhic3vGtLcZjOVSuSMUAqPk=", @@ -1044,13 +1044,13 @@ "vendorHash": "sha256-NO1r/EWLgH1Gogru+qPeZ4sW7FuDENxzNnpLSKstnE8=" }, "spotinst": { - "hash": "sha256-VzIQqxEZl3+cRk19vxJGF0DbzutrfOWeP27TMat//Es=", + "hash": "sha256-0Y9fJFiPLIuurA6OKKnbTvuUe0xFoSyZLQFPkh/LIvY=", "homepage": "https://registry.terraform.io/providers/spotinst/spotinst", "owner": "spotinst", "repo": "terraform-provider-spotinst", - "rev": "v1.120.0", + "rev": "v1.122.0", "spdx": "MPL-2.0", - "vendorHash": "sha256-/sXd/qAChMpVTY/JN45fb2XFG0nsqc1ytC2FjXpva3c=" + "vendorHash": "sha256-hfg3XyBf5V+NJTzCoHbnTU4HkEdQsllqcH2NjeTmlf0=" }, "stackpath": { "hash": "sha256-7KQUddq+M35WYyAIAL8sxBjAaXFcsczBRO1R5HURUZg=", @@ -1098,11 +1098,11 @@ "vendorHash": "sha256-GNSKSlaFBj2P+z40U+0uwPSOuQBy+9vOVFfPe8p0A24=" }, "tencentcloud": { - "hash": "sha256-2xyJ6rrgQKIhdtGNSnSYbL+fQhaqlEsWfGA2vYZeQBQ=", + "hash": "sha256-oi4QYCH2it6ic8/5UuIz3kh4hQEINeSyQjT2YOncjQo=", "homepage": "https://registry.terraform.io/providers/tencentcloudstack/tencentcloud", "owner": "tencentcloudstack", "repo": "terraform-provider-tencentcloud", - "rev": "v1.81.2", + "rev": "v1.81.5", "spdx": "MPL-2.0", "vendorHash": null }, @@ -1253,13 +1253,13 @@ "vendorHash": "sha256-itSr5HHjus6G0t5/KFs0sNiredH9m3JnQ3siLtm+NHs=" }, "yandex": { - "hash": "sha256-HcW6R6TewxIsDJLCL5fU4VkFpQKulywmjCYFEAWN+uQ=", + "hash": "sha256-vBTHtVmQxImTNkS2KVVIoPadYsPK3PL8ADx4L4Vyah8=", "homepage": "https://registry.terraform.io/providers/yandex-cloud/yandex", "owner": "yandex-cloud", "proxyVendor": true, "repo": "terraform-provider-yandex", - "rev": "v0.91.0", + "rev": "v0.92.0", "spdx": "MPL-2.0", - "vendorHash": "sha256-5pzIvNVgfFT4j18JNHxJ5ZappuS9nFjlpPC3dcsIQRQ=" + "vendorHash": "sha256-2KaVZ1k1IEUFWakh16DXFyorqg1PqBQapWUay49LPMk=" } } diff --git a/pkgs/applications/networking/cluster/terragrunt/default.nix b/pkgs/applications/networking/cluster/terragrunt/default.nix index 9c9eb889be40f..0e9056da62e16 100644 --- a/pkgs/applications/networking/cluster/terragrunt/default.nix +++ b/pkgs/applications/networking/cluster/terragrunt/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "terragrunt"; - version = "0.45.16"; + version = "0.45.18"; src = fetchFromGitHub { owner = "gruntwork-io"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-q12MXqYf4yXC1ifXCuHE75Eb553TWbohDB2GusRpNIM="; + hash = "sha256-J4edaMLvL9Bs1bwF+m0LMGiGmEKa7Xcb3SgOiDldTyY="; }; vendorHash = "sha256-5Umoqi2D6iUk2Ut7YB/nmkOyA6Rx2qFhy/ZbfqoX5qA="; diff --git a/pkgs/applications/networking/cluster/tfautomv/default.nix b/pkgs/applications/networking/cluster/tfautomv/default.nix index 94dc0754ff700..1374bfe08f364 100644 --- a/pkgs/applications/networking/cluster/tfautomv/default.nix +++ b/pkgs/applications/networking/cluster/tfautomv/default.nix @@ -5,21 +5,21 @@ buildGoModule rec { pname = "tfautomv"; - version = "0.5.1"; + version = "0.5.2"; src = fetchFromGitHub { - owner = "padok-team"; + owner = "busser"; repo = pname; rev = "v${version}"; - hash = "sha256-shpoi/N/gfzisjj1tvZGSEuorqaoOJMhYOjx+Y8F/Ds="; + hash = "sha256-/Pli1gTG/68BtPdvF+BAwxFaeBrjj69h6Mtcbfm7UZ8="; }; - vendorHash = "sha256-BjmtUamecTSwT7gHM/6uz1r/P8O0TWzp9Dk43rdmxXU="; + vendorHash = "sha256-zAshnSqZT9lx9EWvJsMwi6rqvhUWJ/3uJnk+44TGzlU="; ldflags = [ "-s" "-w" ]; meta = with lib; { - homepage = "https://github.com/padok-team/tfautomv"; + homepage = "https://github.com/busser/tfautomv"; description = "When refactoring a Terraform codebase, you often need to write moved blocks. This can be tedious. Let tfautomv do it for you"; license = licenses.asl20; maintainers = with maintainers; [ qjoly ]; diff --git a/pkgs/applications/networking/cluster/werf/default.nix b/pkgs/applications/networking/cluster/werf/default.nix index acc4cf4324b49..7d999520e1507 100644 --- a/pkgs/applications/networking/cluster/werf/default.nix +++ b/pkgs/applications/networking/cluster/werf/default.nix @@ -10,16 +10,16 @@ buildGoModule rec { pname = "werf"; - version = "1.2.238"; + version = "1.2.239"; src = fetchFromGitHub { owner = "werf"; repo = "werf"; rev = "v${version}"; - hash = "sha256-cMjekqIZnZMcDEEdeBs/jkPh/mqgox4gV+LkqP3IR5g="; + hash = "sha256-1yLa5AYrKz1utArvw/225b2J/79L3Tnj2LcHUpaIhrs="; }; - vendorHash = "sha256-67J7AaS0kUu42BqFWMsC+ZXL2DnrBWwhz/oGmyMvpyo="; + vendorHash = "sha256-GFWQterwrZonVMLNHtEKapr4QrU6NXK4xjvmNJ3VeA0="; proxyVendor = true; diff --git a/pkgs/applications/networking/cluster/yor/default.nix b/pkgs/applications/networking/cluster/yor/default.nix new file mode 100644 index 0000000000000..ae5e64e2fe094 --- /dev/null +++ b/pkgs/applications/networking/cluster/yor/default.nix @@ -0,0 +1,42 @@ +{ buildGoModule +, fetchFromGitHub +, lib +}: + +buildGoModule rec { + pname = "yor"; + version = "0.1.177"; + + src = fetchFromGitHub { + owner = "bridgecrewio"; + repo = pname; + rev = version; + hash = "sha256-tOYRd3LxSlAvXCW89LAm4GWWukDBZhsgYIWYlEVKokE="; + }; + + vendorHash = "sha256-ZeTjGmlu8LndD2DKNncPzlpECdvkOjfwaVvV6S3sL9E="; + + doCheck = false; + + # https://github.com/bridgecrewio/yor/blob/main/set-version.sh + preBuild = '' + cat << EOF > src/common/version.go + package common + + const Version = "${version}" + EOF + ''; + + ldflags = [ + "-s" + "-w" + ]; + + meta = with lib; { + description = "Extensible auto-tagger for your IaC files. The ultimate way to link entities in the cloud back to the codified resource which created it."; + homepage = "https://github.com/bridgecrewio/yor"; + changelog = "https://github.com/bridgecrewio/yor/releases/tag/${version}"; + license = licenses.asl20; + maintainers = [ maintainers.ivankovnatsky ]; + }; +} diff --git a/pkgs/applications/networking/dnscontrol/default.nix b/pkgs/applications/networking/dnscontrol/default.nix index f291f465d3fd4..63122b80d7b52 100644 --- a/pkgs/applications/networking/dnscontrol/default.nix +++ b/pkgs/applications/networking/dnscontrol/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "dnscontrol"; - version = "4.0.1"; + version = "4.1.0"; src = fetchFromGitHub { owner = "StackExchange"; repo = pname; rev = "v${version}"; - sha256 = "sha256-1JSFhuH/YdWFckFxaky11R8eXl2xzYe5VCk0XGXwCp8="; + sha256 = "sha256-v7ED66CQ1DHfsrOXFJDlH80xL/U9ROn7fpGxPOm2WY4="; }; - vendorHash = "sha256-oO/EMaVkcc054C6VOPjh6r4UhHifq2rQKtrYSg5frFQ="; + vendorHash = "sha256-4tYtqsi8b7jfd3rxr7HY6XXRVROne6mN0hLVkPZdmCs="; subPackages = [ "." ]; diff --git a/pkgs/applications/networking/filebrowser/default.nix b/pkgs/applications/networking/filebrowser/default.nix new file mode 100644 index 0000000000000..265e8236be69f --- /dev/null +++ b/pkgs/applications/networking/filebrowser/default.nix @@ -0,0 +1,60 @@ +{ buildGoModule, buildNpmPackage, fetchFromGitHub, lib }: + +let + frontend = buildNpmPackage rec { + pname = "filebrowser-frontend"; + version = "2.23.0"; + + src = fetchFromGitHub { + owner = "filebrowser"; + repo = "filebrowser"; + rev = "v${version}"; + hash = "sha256-xhBIJcEtxDdMXSgQtLAV0UWzPtrvKEil0WV76K5ycBc="; + }; + + sourceRoot = "source/frontend"; + + npmDepsHash = "sha256-acNIMKHc4q7eiFLPBtKZBNweEsrt+//0VR6dqwXHTvA="; + + NODE_OPTIONS = "--openssl-legacy-provider"; + + installPhase = '' + runHook preInstall + + mkdir $out + mv dist $out + + runHook postInstall + ''; + }; +in +buildGoModule rec { + pname = "filebrowser"; + version = "2.23.0"; + + src = fetchFromGitHub { + owner = "filebrowser"; + repo = "filebrowser"; + rev = "v${version}"; + hash = "sha256-xhBIJcEtxDdMXSgQtLAV0UWzPtrvKEil0WV76K5ycBc="; + }; + + vendorHash = "sha256-MR0ju2Nomb3j78Z+1YcJY+jPd40MZpuOTuQJM94AM8A="; + + excludedPackages = [ "tools" ]; + + preBuild = '' + cp -r ${frontend}/dist frontend/ + ''; + + passthru = { + inherit frontend; + }; + + meta = with lib; { + description = "Filebrowser is a web application for managing files and directories"; + homepage = "https://filebrowser.org"; + license = licenses.asl20; + maintainers = with maintainers; [ nielsegberts ]; + }; +} diff --git a/pkgs/applications/networking/flexget/default.nix b/pkgs/applications/networking/flexget/default.nix index 6a0687ae17aad..e88ff00ba9434 100644 --- a/pkgs/applications/networking/flexget/default.nix +++ b/pkgs/applications/networking/flexget/default.nix @@ -6,7 +6,7 @@ python3.pkgs.buildPythonApplication rec { pname = "flexget"; - version = "3.7.2"; + version = "3.7.4"; format = "pyproject"; # Fetch from GitHub in order to use `requirements.in` @@ -14,7 +14,7 @@ python3.pkgs.buildPythonApplication rec { owner = "Flexget"; repo = "Flexget"; rev = "refs/tags/v${version}"; - hash = "sha256-K71nawQhFYLPRg79rcZKJ+US+3M5JAU0eg+ZiFwB6n8="; + hash = "sha256-x5hwuc2yXDw8qWGLRJDH4V4rmvxjBKZaogmv4SxXoz4="; }; postPatch = '' diff --git a/pkgs/applications/networking/gabutdm/default.nix b/pkgs/applications/networking/gabutdm/default.nix index 11cde55344bf6..6fbe0222112c4 100644 --- a/pkgs/applications/networking/gabutdm/default.nix +++ b/pkgs/applications/networking/gabutdm/default.nix @@ -19,13 +19,13 @@ stdenv.mkDerivation rec { pname = "gabutdm"; - version = "2.1.5"; + version = "2.1.6"; src = fetchFromGitHub { owner = "gabutakut"; repo = pname; rev = version; - hash = "sha256-8fV7STYSpmNnLyoAjz+RuF/0nFeNiu8AIxkON1MbWr4="; + hash = "sha256-ai5LsoK21XwXqL4LRuKsOR1/JV6LnP+1ZJ9fMHpj178="; }; nativeBuildInputs = [ @@ -54,7 +54,7 @@ stdenv.mkDerivation rec { ''; meta = with lib; { - description = "Simple and faster download manager"; + description = "Simple and fast download manager"; homepage = "https://github.com/gabutakut/gabutdm"; license = licenses.lgpl21Plus; mainProgram = "com.github.gabutakut.gabutdm"; diff --git a/pkgs/applications/networking/instant-messengers/element/element-desktop.nix b/pkgs/applications/networking/instant-messengers/element/element-desktop.nix index f30850d2586df..67e21bcd18215 100644 --- a/pkgs/applications/networking/instant-messengers/element/element-desktop.nix +++ b/pkgs/applications/networking/instant-messengers/element/element-desktop.nix @@ -123,6 +123,10 @@ stdenv.mkDerivation (finalAttrs: builtins.removeAttrs pinData [ "hashes" ] // { mimeTypes = [ "x-scheme-handler/element" ]; }; + postFixup = lib.optionalString stdenv.isDarwin '' + cp build/icon.icns $out/Applications/Element.app/Contents/Resources/element.icns + ''; + passthru = { updateScript = ./update.sh; diff --git a/pkgs/applications/networking/instant-messengers/element/pin.nix b/pkgs/applications/networking/instant-messengers/element/pin.nix index 0cb0dfb5993bb..689888e3c9f2e 100644 --- a/pkgs/applications/networking/instant-messengers/element/pin.nix +++ b/pkgs/applications/networking/instant-messengers/element/pin.nix @@ -1,9 +1,9 @@ { - "version" = "1.11.31"; + "version" = "1.11.32"; "hashes" = { - "desktopSrcHash" = "urCMClvyJx6e0UXDAcZysZvw3Qb6cnPjiy/aR4Uqtzs="; - "desktopYarnHash" = "1yrdg7fn533qg6wzg99s2si68nlzgvp9wiyallq0s2b665bznqxj"; - "webSrcHash" = "eVZ3SaUqM2YQehQNIS5kVQ98HrNwovYsZwHCndCcFa4="; - "webYarnHash" = "0xzwvhpvxzslvcybyn3si91fyi6a7xnrgib5dj6v5lcha1xd32w7"; + "desktopSrcHash" = "eUxqai6DZ18D67dGZQNxly6/wP0lEdkxR4H9oWUr8lI="; + "desktopYarnHash" = "09qcp69jgl5dcwhpvwcx8q60m2xr1paq0dih8a3zyjydrq9kggda"; + "webSrcHash" = "JyYC7VmnXZ2w3uXgCFv6iVSZBkPHl243+fCsymgqwzk="; + "webYarnHash" = "037airq21dvr6rbsc94xmdcd30yvqc5ffz4sz2avfky6g1y84nq7"; }; } diff --git a/pkgs/applications/networking/instant-messengers/ferdium/default.nix b/pkgs/applications/networking/instant-messengers/ferdium/default.nix index 0ff76e4188620..c68dae7edaa8e 100644 --- a/pkgs/applications/networking/instant-messengers/ferdium/default.nix +++ b/pkgs/applications/networking/instant-messengers/ferdium/default.nix @@ -3,10 +3,10 @@ mkFranzDerivation rec { pname = "ferdium"; name = "Ferdium"; - version = "6.2.6"; + version = "6.3.0"; src = fetchurl { url = "https://github.com/ferdium/ferdium-app/releases/download/v${version}/Ferdium-linux-${version}-amd64.deb"; - sha256 = "sha256-jG3NdolWqQzj/62jYwnqJHz5uT6QIuOkrpL/FcLl56k="; + sha256 = "sha256-3i3cEGwUXNITABJRXV+xQ2knYjuG1F818EvhLBrVep8="; }; extraBuildInputs = [ xorg.libxshmfence ]; diff --git a/pkgs/applications/networking/instant-messengers/qq/default.nix b/pkgs/applications/networking/instant-messengers/qq/default.nix index e47a5349ed690..63077827369dc 100644 --- a/pkgs/applications/networking/instant-messengers/qq/default.nix +++ b/pkgs/applications/networking/instant-messengers/qq/default.nix @@ -22,16 +22,16 @@ }: let - version = "3.1.2-12912"; - _hash = "80d33f88"; + version = "3.1.2-13107"; + _hash = "ad5b5393"; srcs = { x86_64-linux = fetchurl { url = "https://dldir1.qq.com/qqfile/qq/QQNT/${_hash}/linuxqq_${version}_amd64.deb"; - hash = "sha256-F+zIHqYWKiCHYNJZ5hRw0rzltizjuqhVxbpzQGagoZ0="; + hash = "sha256-mBfeexWEYpGybFFianUFvlzMv0HoFR4EeFcwlGVXIRA="; }; aarch64-linux = fetchurl { url = "https://dldir1.qq.com/qqfile/qq/QQNT/${_hash}/linuxqq_${version}_arm64.deb"; - hash = "sha256-5n4T0mlfEh9/84wUYiH437R95Qz6/SKDq/AK6baiW24="; + hash = "sha256-V6kR2lb63nnNIEhn64Yg0BYYlz7W0Cw60TwnKaJuLgs="; }; }; src = srcs.${stdenv.hostPlatform.system} or (throw "Unsupported system: ${stdenv.hostPlatform.system}"); diff --git a/pkgs/applications/networking/instant-messengers/signalbackup-tools/default.nix b/pkgs/applications/networking/instant-messengers/signalbackup-tools/default.nix index 93f9588f134ae..847e6851fa8fd 100644 --- a/pkgs/applications/networking/instant-messengers/signalbackup-tools/default.nix +++ b/pkgs/applications/networking/instant-messengers/signalbackup-tools/default.nix @@ -2,13 +2,13 @@ (if stdenv.isDarwin then darwin.apple_sdk_11_0.llvmPackages_14.stdenv else stdenv).mkDerivation rec { pname = "signalbackup-tools"; - version = "20230523"; + version = "20230603-2"; src = fetchFromGitHub { owner = "bepaald"; repo = pname; rev = version; - hash = "sha256-u0UztFdEevFVNRtRvyaeDX4vMyrGuzTMd3/nzRUqjV0="; + hash = "sha256-BcvC50K5yt2aoStyoJ2XZYs3hb2YnVDL3kRpU/Y23Z4="; }; postPatch = '' diff --git a/pkgs/applications/networking/instant-messengers/slack/default.nix b/pkgs/applications/networking/instant-messengers/slack/default.nix index 57892ba31d469..4d8c1d4aee988 100644 --- a/pkgs/applications/networking/instant-messengers/slack/default.nix +++ b/pkgs/applications/networking/instant-messengers/slack/default.nix @@ -45,14 +45,14 @@ let pname = "slack"; - x86_64-darwin-version = "4.29.149"; - x86_64-darwin-sha256 = "sha256-E0YnOPnaWFe17gCpFywxu5uHs1pEktA1tUu4QqvKhYw="; + x86_64-darwin-version = "4.32.122"; + x86_64-darwin-sha256 = "sha256-aKvMtuo3cNJsw42RNezmETsLAtl6G2yqYGOGp2Pt32U=3"; - x86_64-linux-version = "4.29.149"; - x86_64-linux-sha256 = "sha256-ulXIGLp2ql47ZS6IeaMuqye39deDtukOB1dxy5BNCwI="; + x86_64-linux-version = "4.32.122"; + x86_64-linux-sha256 = "sha256-ViJHG7s7xqnatNOss5mfa7GqqlHbBrLGHBzTqqo7W/w="; - aarch64-darwin-version = "4.29.149"; - aarch64-darwin-sha256 = "sha256-Nn+dFD3H/By+aBPLDxnPneNXuFl+tHdLhxJXeYBMORg="; + aarch64-darwin-version = "4.32.122"; + aarch64-darwin-sha256 = "sha256-j3PbH/5cKN5+vUiLvXaxyPYilt6GX6FsGo+1hlJKrls="; version = { x86_64-darwin = x86_64-darwin-version; diff --git a/pkgs/applications/networking/instant-messengers/teams-for-linux/default.nix b/pkgs/applications/networking/instant-messengers/teams-for-linux/default.nix index b26700203d73c..2df5942329768 100644 --- a/pkgs/applications/networking/instant-messengers/teams-for-linux/default.nix +++ b/pkgs/applications/networking/instant-messengers/teams-for-linux/default.nix @@ -17,13 +17,13 @@ stdenv.mkDerivation rec { pname = "teams-for-linux"; - version = "1.0.93"; + version = "1.1.1"; src = fetchFromGitHub { owner = "IsmaelMartinez"; repo = pname; rev = "v${version}"; - sha256 = "sha256-mWLjGednrKnEIvrL2iHQP3xoCb6SxptzbE40aJ5wH1U="; + sha256 = "sha256-Yeq74thHzFt4+KDf7cwgyVbTIeXF9/zb81bEAINJbEU="; }; offlineCache = fetchYarnDeps { diff --git a/pkgs/applications/networking/instant-messengers/telegram/telegram-desktop/default.nix b/pkgs/applications/networking/instant-messengers/telegram/telegram-desktop/default.nix index 28f3c363bbd8b..3fa19c21ba7fc 100644 --- a/pkgs/applications/networking/instant-messengers/telegram/telegram-desktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/telegram/telegram-desktop/default.nix @@ -6,6 +6,7 @@ , cmake , ninja , python3 +, gobject-introspection , wrapGAppsHook , wrapQtAppsHook , extra-cmake-modules @@ -13,8 +14,9 @@ , qtwayland , qtsvg , qtimageformats -, qt5compat , gtk3 +, boost +, fmt , libdbusmenu , lz4 , xxHash @@ -55,6 +57,7 @@ , microsoft-gsl , rlottie , stdenv +, nix-update-script }: # Main reference: @@ -73,15 +76,14 @@ let in stdenv.mkDerivation rec { pname = "telegram-desktop"; - version = "4.8.1"; - # Note: Update via pkgs/applications/networking/instant-messengers/telegram/tdesktop/update.py + version = "4.8.3"; src = fetchFromGitHub { owner = "telegramdesktop"; repo = "tdesktop"; rev = "v${version}"; fetchSubmodules = true; - sha256 = "0mxxfh70dffkrq76nky3pwrk10s1q4ahxx2ddb58dz8igq6pl4zi"; + hash = "sha256-fvg9SFHRHeJVogYQ+vyVqGyLGnOjM5Osi3H0SNGe9fY="; }; patches = [ @@ -103,6 +105,8 @@ stdenv.mkDerivation rec { --replace '"libpulse.so.0"' '"${libpulseaudio}/lib/libpulse.so.0"' substituteInPlace Telegram/lib_webview/webview/platform/linux/webview_linux_webkitgtk_library.cpp \ --replace '"libwebkitgtk-6.0.so.4"' '"${webkitgtk_6_0}/lib/libwebkitgtk-6.0.so.4"' + substituteInPlace cmake/external/glib/CMakeLists.txt \ + --replace 'add_subdirectory(cppgir)' 'add_subdirectory(cppgir EXCLUDE_FROM_ALL)' ''; # We want to run wrapProgram manually (with additional parameters) @@ -114,6 +118,7 @@ stdenv.mkDerivation rec { cmake ninja python3 + gobject-introspection wrapGAppsHook wrapQtAppsHook extra-cmake-modules @@ -124,8 +129,9 @@ stdenv.mkDerivation rec { qtwayland qtsvg qtimageformats - qt5compat gtk3 + boost + fmt libdbusmenu lz4 xxHash @@ -174,6 +180,11 @@ stdenv.mkDerivation rec { "-DDESKTOP_APP_USE_PACKAGED_FONTS=OFF" ]; + preBuild = '' + # for cppgir to locate gir files + export GI_GIR_PATH="$XDG_DATA_DIRS" + ''; + postFixup = '' # This is necessary to run Telegram in a pure environment. # We also use gappsWrapperArgs from wrapGAppsHook. @@ -186,7 +197,7 @@ stdenv.mkDerivation rec { passthru = { inherit tg_owt; - updateScript = ./update.py; + updateScript = nix-update-script { }; }; meta = with lib; { diff --git a/pkgs/applications/networking/instant-messengers/telegram/telegram-desktop/tg_owt.nix b/pkgs/applications/networking/instant-messengers/telegram/telegram-desktop/tg_owt.nix index 025f5f83ecf35..bc123e212d075 100644 --- a/pkgs/applications/networking/instant-messengers/telegram/telegram-desktop/tg_owt.nix +++ b/pkgs/applications/networking/instant-messengers/telegram/telegram-desktop/tg_owt.nix @@ -4,7 +4,7 @@ , openh264, usrsctp, libevent, libvpx , libX11, libXtst, libXcomposite, libXdamage, libXext, libXrender, libXrandr, libXi , glib, abseil-cpp, pcre, util-linuxMinimal, libselinux, libsepol, pipewire -, mesa, valgrind, libepoxy, libglvnd +, mesa, libepoxy, libglvnd, unstableGitUpdater }: stdenv.mkDerivation { @@ -54,6 +54,8 @@ stdenv.mkDerivation { abseil-cpp openh264 usrsctp libevent libvpx openssl ]; + passthru.updateScript = unstableGitUpdater { }; + meta = with lib; { license = licenses.bsd3; maintainers = with maintainers; [ oxalica ]; diff --git a/pkgs/applications/networking/instant-messengers/telegram/telegram-desktop/update.py b/pkgs/applications/networking/instant-messengers/telegram/telegram-desktop/update.py deleted file mode 100755 index 89e40218623b0..0000000000000 --- a/pkgs/applications/networking/instant-messengers/telegram/telegram-desktop/update.py +++ /dev/null @@ -1,73 +0,0 @@ -#! /usr/bin/env nix-shell -#! nix-shell -i python3 -p python3 nix nix-prefetch-git - -import fileinput -import json -import os -import re -import subprocess - -from datetime import datetime -from urllib.request import urlopen, Request - - -DIR = os.path.dirname(os.path.abspath(__file__)) -HEADERS = {'Accept': 'application/vnd.github.v3+json'} - - -def github_api_request(endpoint): - base_url = 'https://api.github.com/' - request = Request(base_url + endpoint, headers=HEADERS) - with urlopen(request) as http_response: - return json.loads(http_response.read().decode('utf-8')) - - -def get_commit_date(repo, sha): - url = f'https://api.github.com/repos/{repo}/commits/{sha}' - request = Request(url, headers=HEADERS) - with urlopen(request) as http_response: - commit = json.loads(http_response.read().decode()) - date = commit['commit']['committer']['date'].rstrip('Z') - date = datetime.fromisoformat(date).date().isoformat() - return 'unstable-' + date - - -def nix_prefetch_git(url, rev): - """Prefetches the requested Git revision (incl. submodules) of the given repository URL.""" - print(f'nix-prefetch-git {url} {rev}') - out = subprocess.check_output(['nix-prefetch-git', '--quiet', '--url', url, '--rev', rev, '--fetch-submodules']) - return json.loads(out)['sha256'] - - -def nix_prefetch_url(url, unpack=False): - """Prefetches the content of the given URL.""" - print(f'nix-prefetch-url {url}') - options = ['--type', 'sha256'] - if unpack: - options += ['--unpack'] - out = subprocess.check_output(['nix-prefetch-url'] + options + [url]) - return out.decode('utf-8').rstrip() - - -def update_file(relpath, version, sha256, rev=None): - file_path = os.path.join(DIR, relpath) - with fileinput.FileInput(file_path, inplace=True) as f: - for line in f: - result = line - result = re.sub(r'^ version = ".+";', f' version = "{version}";', result) - result = re.sub(r'^ sha256 = ".+";', f' sha256 = "{sha256}";', result) - if rev: - result = re.sub(r'^ rev = ".*";', f' rev = "{rev}";', result) - print(result, end='') - - -if __name__ == "__main__": - tdesktop_tag = github_api_request('repos/telegramdesktop/tdesktop/releases/latest')['tag_name'] - tdesktop_version = tdesktop_tag.lstrip('v') - tdesktop_hash = nix_prefetch_git('https://github.com/telegramdesktop/tdesktop.git', tdesktop_tag) - update_file('default.nix', tdesktop_version, tdesktop_hash) - tg_owt_ref = github_api_request('repos/desktop-app/tg_owt/commits/master')['sha'] - tg_owt_version = get_commit_date('desktop-app/tg_owt', tg_owt_ref) - tg_owt_hash = nix_prefetch_git('https://github.com/desktop-app/tg_owt.git', tg_owt_ref) - update_file('tg_owt.nix', tg_owt_version, tg_owt_hash, tg_owt_ref) - tg_owt_ref = github_api_request('repos/desktop-app/tg_owt/commits/master')['sha'] diff --git a/pkgs/applications/networking/instant-messengers/whatsapp-for-linux/default.nix b/pkgs/applications/networking/instant-messengers/whatsapp-for-linux/default.nix index 32eaf8ada5ca1..ed9cf85640e22 100644 --- a/pkgs/applications/networking/instant-messengers/whatsapp-for-linux/default.nix +++ b/pkgs/applications/networking/instant-messengers/whatsapp-for-linux/default.nix @@ -27,13 +27,13 @@ stdenv.mkDerivation rec { pname = "whatsapp-for-linux"; - version = "1.6.2"; + version = "1.6.3"; src = fetchFromGitHub { owner = "eneshecan"; repo = pname; rev = "v${version}"; - sha256 = "sha256-odE5syAFasGosc1WMU/pvQtk3YxuCci1YevZqNKfzYw="; + sha256 = "sha256-YmiEzemoGLwCUVfnuTmruSkI0oBg7yNuodWmXTMGh8g="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/networking/irc/thelounge/default.nix b/pkgs/applications/networking/irc/thelounge/default.nix index bee360d55e66f..0ccca903f1793 100644 --- a/pkgs/applications/networking/irc/thelounge/default.nix +++ b/pkgs/applications/networking/irc/thelounge/default.nix @@ -1,4 +1,18 @@ -{ lib, stdenv, fetchFromGitHub, fetchYarnDeps, yarn, fixup_yarn_lock, nodejs, npmHooks, nixosTests }: +{ lib +, stdenv +, fetchFromGitHub +, fetchYarnDeps +, nodejs +, yarn +, fixup_yarn_lock +, python3 +, npmHooks +, darwin +, sqlite +, srcOnly +, buildPackages +, nixosTests +}: stdenv.mkDerivation (finalAttrs: { pname = "thelounge"; @@ -24,7 +38,8 @@ stdenv.mkDerivation (finalAttrs: { hash = "sha256-OKLsNGl94EDyLgP2X2tiwihgRQFXGvf5XgXwgX+JEpk="; }; - nativeBuildInputs = [ nodejs yarn fixup_yarn_lock npmHooks.npmInstallHook ]; + nativeBuildInputs = [ nodejs yarn fixup_yarn_lock python3 npmHooks.npmInstallHook ] ++ lib.optional stdenv.isDarwin darwin.cctools; + buildInputs = [ sqlite ]; configurePhase = '' runHook preConfigure @@ -49,8 +64,14 @@ stdenv.mkDerivation (finalAttrs: { # `npm prune` doesn't work and/or hangs for whatever reason. preInstall = '' - rm -rf node_modules yarn install --offline --frozen-lockfile --ignore-platform --ignore-scripts --no-progress --non-interactive --production + patchShebangs node_modules + + # Build the sqlite3 package. + npm_config_nodedir="${srcOnly nodejs}" npm_config_node_gyp="${buildPackages.nodejs}/lib/node_modules/npm/node_modules/node-gyp/bin/node-gyp.js" npm rebuild --verbose --sqlite=${sqlite.dev} + + # These files seemingly aren't needed, and also might not exist when the Darwin sandbox is disabled? + rm -rf node_modules/sqlite3/build-tmp-napi-v6/{Release/obj.target,node_sqlite3.target.mk} ''; dontNpmPrune = true; diff --git a/pkgs/applications/networking/juju/default.nix b/pkgs/applications/networking/juju/default.nix index c412044bc951a..b4f33a4e0e083 100644 --- a/pkgs/applications/networking/juju/default.nix +++ b/pkgs/applications/networking/juju/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "juju"; - version = "3.1.2"; + version = "3.2.0"; src = fetchFromGitHub { owner = "juju"; repo = "juju"; rev = "juju-${version}"; - sha256 = "sha256-nleWdgIYmIltZKjjFl6axQd2fkL8UIXZRbATU96cdQ0="; + sha256 = "sha256-wm6yWxGFQBlNtFfL1PnUuljy6ODOboiyND4cqPjl1nM="; }; - vendorHash = "sha256-b6C1FbVXHeJqG9Vh8dqqZ+94T42oRM9kVbDmLuOiPvA="; + vendorHash = "sha256-ll0qm0noD1Zox8uOlp2Rr/sFFzQlJlpss4Ot3LQn/g4="; # Disable tests because it attempts to use a mongodb instance doCheck = false; diff --git a/pkgs/applications/networking/mailreaders/evolution/evolution/default.nix b/pkgs/applications/networking/mailreaders/evolution/evolution/default.nix index 8f4c6199e2bbc..d2bfc24662fc6 100644 --- a/pkgs/applications/networking/mailreaders/evolution/evolution/default.nix +++ b/pkgs/applications/networking/mailreaders/evolution/evolution/default.nix @@ -44,11 +44,11 @@ stdenv.mkDerivation rec { pname = "evolution"; - version = "3.48.2"; + version = "3.48.3"; src = fetchurl { url = "mirror://gnome/sources/evolution/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "rigYzxC6jyLsGgwN/4gkVSRkMMMikN1VJvTh/i5i6rc="; + sha256 = "ZhJexH/XcBcRdNDAhYZu/7aoNEQBW34sdkEpUtbLDiM="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/networking/newsreaders/raven-reader/default.nix b/pkgs/applications/networking/newsreaders/raven-reader/default.nix index 4cfcfabe3d8f7..b78afb6a726e5 100644 --- a/pkgs/applications/networking/newsreaders/raven-reader/default.nix +++ b/pkgs/applications/networking/newsreaders/raven-reader/default.nix @@ -2,10 +2,10 @@ let pname = "raven-reader"; - version = "1.0.78"; + version = "1.0.80"; src = fetchurl { url = "https://github.com/hello-efficiency-inc/raven-reader/releases/download/v${version}/Raven-Reader-${version}.AppImage"; - sha256 = "sha256-H9V2zTD80fBuIuNZnGDR21IYAAl/b6iYrde5rfsMECQ="; + sha256 = "sha256-RkpUWM1hAH73ePpQPj2C3SOukLpcPXbaXmb1VbcHaSU="; }; appimageContents = appimageTools.extractType2 { inherit pname version src; }; diff --git a/pkgs/applications/networking/p2p/pyrosimple/default.nix b/pkgs/applications/networking/p2p/pyrosimple/default.nix index 15a9ce266e00d..c735057e4573f 100644 --- a/pkgs/applications/networking/p2p/pyrosimple/default.nix +++ b/pkgs/applications/networking/p2p/pyrosimple/default.nix @@ -6,6 +6,8 @@ , testers , fetchPypi , buildPythonPackage +, pythonRelaxDepsHook +, poetry-core , bencode-py , apscheduler , jinja2 @@ -24,14 +26,27 @@ }: let - pname = "pyrosimple"; - version = "2.7.0"; + pname = "pyrosimple"; + version = "2.8.0"; +in buildPythonPackage { + inherit pname version; src = fetchPypi { inherit pname version; - hash = "sha256-SMqzvTbWFHwnbMQ+6K0m1v+PybceQK5EHEuN8FB6SaU="; + hash = "sha256-K0QjEcGzROlSWuUHWqUbcOdKccrHex2SlwPAmsmIbaQ="; }; + format = "pyproject"; + + nativeBuildInputs = [ + poetry-core + pythonRelaxDepsHook + ]; + + pythonRelaxDeps = [ + "python-daemon" + ]; + propagatedBuildInputs = [ bencode-py apscheduler @@ -48,9 +63,6 @@ let tomli-w ] ++ lib.optional withInotify inotify; -in buildPythonPackage { - inherit pname version src propagatedBuildInputs; - passthru = { updateScript = nix-update-script { }; tests = testers.testVersion { @@ -59,14 +71,13 @@ in buildPythonPackage { }; }; - meta = let inherit (lib) licenses platforms maintainers; - in { + meta = with lib; { homepage = "https://kannibalox.github.io/pyrosimple/"; description = "A rTorrent client and Python 3 fork of the pyrocore tools"; license = licenses.gpl3Plus; changelog = "https://github.com/kannibalox/pyrosimple/blob/v${version}/CHANGELOG.md"; platforms = platforms.all; - maintainers = builtins.attrValues { inherit (maintainers) ne9z; }; + maintainers = with maintainers; [ ne9z vamega ]; }; } diff --git a/pkgs/applications/networking/p2p/transmission/default.nix b/pkgs/applications/networking/p2p/transmission/default.nix index 403b0bc9e87c6..cc82c5038083c 100644 --- a/pkgs/applications/networking/p2p/transmission/default.nix +++ b/pkgs/applications/networking/p2p/transmission/default.nix @@ -142,7 +142,7 @@ in stdenv.mkDerivation { ''; homepage = "http://www.transmissionbt.com/"; license = lib.licenses.gpl2Plus; # parts are under MIT - maintainers = with lib.maintainers; [ astsmtl vcunat ]; + maintainers = with lib.maintainers; [ astsmtl ]; platforms = lib.platforms.unix; }; diff --git a/pkgs/applications/networking/seaweedfs/default.nix b/pkgs/applications/networking/seaweedfs/default.nix index af2f8305b8217..933780e5981bc 100644 --- a/pkgs/applications/networking/seaweedfs/default.nix +++ b/pkgs/applications/networking/seaweedfs/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "seaweedfs"; - version = "3.51"; + version = "3.52"; src = fetchFromGitHub { owner = "seaweedfs"; repo = "seaweedfs"; rev = version; - hash = "sha256-+5eni4i3LoPE0+Qzw4f6I//y5MzGxgj3NrT7YtYs/Fw="; + hash = "sha256-20z9gS4AWs0WiZir7fO/E1ou7H+sbySc1AX2IaPNng0="; }; - vendorHash = "sha256-LeWI5wbq06sBhAf5gqK8Zr8nmB9W1tDUUqF1HeZa1SM="; + vendorHash = "sha256-sBvXNnZUblplDDHRy4agKSyafm2dBtS2PSMVO3MfckY="; subPackages = [ "weed" ]; diff --git a/pkgs/applications/networking/shellhub-agent/default.nix b/pkgs/applications/networking/shellhub-agent/default.nix index bbe6122c547fc..23dad8b328a5f 100644 --- a/pkgs/applications/networking/shellhub-agent/default.nix +++ b/pkgs/applications/networking/shellhub-agent/default.nix @@ -11,18 +11,18 @@ buildGo120Module rec { pname = "shellhub-agent"; - version = "0.12.0"; + version = "0.12.1"; src = fetchFromGitHub { owner = "shellhub-io"; repo = "shellhub"; rev = "v${version}"; - sha256 = "+aLs0+nHWglFYAM6CHyrPAALS/7x4vYOtu/M1mKH6hg="; + sha256 = "dOqBisB2nxJPvlB9BA69a0ODk5eFrjPnfMBCGFBig3s="; }; modRoot = "./agent"; - vendorSha256 = "sha256-TInS0uTpjTrLuthRn0SOSDh3j0bf+XCP4PVcL19mBiQ="; + vendorSha256 = "sha256-gVW0vyfQ8i3HaTAJMZLWZvSjuRZcPPCj+BLPL5A6uzM="; ldflags = [ "-s" "-w" "-X main.AgentVersion=v${version}" ]; diff --git a/pkgs/applications/office/bookletimposer/default.nix b/pkgs/applications/office/bookletimposer/default.nix index 806a9f76addf8..6bdaf63b771b7 100644 --- a/pkgs/applications/office/bookletimposer/default.nix +++ b/pkgs/applications/office/bookletimposer/default.nix @@ -25,9 +25,7 @@ python3.pkgs.buildPythonApplication rec { ./configdir.patch ]; - nativeBuildInputs = [ intltool pandoc wrapGAppsHook ]; - - buildInputs = [ gobject-introspection ]; + nativeBuildInputs = [ intltool pandoc wrapGAppsHook gobject-introspection ]; propagatedBuildInputs = [ gtk3 diff --git a/pkgs/applications/office/libreoffice/src-fresh/download.nix b/pkgs/applications/office/libreoffice/src-fresh/download.nix index 959c3c5d8ac9d..345c30299f04c 100644 --- a/pkgs/applications/office/libreoffice/src-fresh/download.nix +++ b/pkgs/applications/office/libreoffice/src-fresh/download.nix @@ -301,11 +301,11 @@ md5name = "b8e892d8627c41888ff121e921455b9e2d26836978f2359173d19825da62b8fc-graphite2-minimal-1.3.14.tgz"; } { - name = "harfbuzz-5.2.0.tar.xz"; - url = "https://dev-www.libreoffice.org/src/harfbuzz-5.2.0.tar.xz"; - sha256 = "735a94917b47936575acb4d4fa7e7986522f8a89527e4635721474dee2bc942c"; + name = "harfbuzz-7.1.0.tar.xz"; + url = "https://dev-www.libreoffice.org/src/harfbuzz-7.1.0.tar.xz"; + sha256 = "f135a61cd464c9ed6bc9823764c188f276c3850a8dc904628de2a87966b7077b"; md5 = ""; - md5name = "735a94917b47936575acb4d4fa7e7986522f8a89527e4635721474dee2bc942c-harfbuzz-5.2.0.tar.xz"; + md5name = "f135a61cd464c9ed6bc9823764c188f276c3850a8dc904628de2a87966b7077b-harfbuzz-7.1.0.tar.xz"; } { name = "hsqldb_1_8_0.zip"; @@ -420,11 +420,11 @@ md5name = "39bb3fcea1514f1369fcfc87542390fd-sacjava-1.3.zip"; } { - name = "libjpeg-turbo-2.1.5.tar.gz"; - url = "https://dev-www.libreoffice.org/src/libjpeg-turbo-2.1.5.tar.gz"; - sha256 = "bc12bc9dce55300c6bf4342bc233bcc26bd38bf289eedf147360d731c668ddaf"; + name = "libjpeg-turbo-2.1.5.1.tar.gz"; + url = "https://dev-www.libreoffice.org/src/libjpeg-turbo-2.1.5.1.tar.gz"; + sha256 = "2fdc3feb6e9deb17adec9bafa3321419aa19f8f4e5dea7bf8486844ca22207bf"; md5 = ""; - md5name = "bc12bc9dce55300c6bf4342bc233bcc26bd38bf289eedf147360d731c668ddaf-libjpeg-turbo-2.1.5.tar.gz"; + md5name = "2fdc3feb6e9deb17adec9bafa3321419aa19f8f4e5dea7bf8486844ca22207bf-libjpeg-turbo-2.1.5.1.tar.gz"; } { name = "language-subtag-registry-2022-08-08.tar.bz2"; @@ -504,11 +504,11 @@ md5name = "083daa92d8ee6f4af96a6143b12d7fc8fe1a547e14f862304f7281f8f7347483-ltm-1.0.zip"; } { - name = "libwebp-1.2.4.tar.gz"; - url = "https://dev-www.libreoffice.org/src/libwebp-1.2.4.tar.gz"; - sha256 = "7bf5a8a28cc69bcfa8cb214f2c3095703c6b73ac5fba4d5480c205331d9494df"; + name = "libwebp-1.3.0.tar.gz"; + url = "https://dev-www.libreoffice.org/src/libwebp-1.3.0.tar.gz"; + sha256 = "64ac4614db292ae8c5aa26de0295bf1623dbb3985054cb656c55e67431def17c"; md5 = ""; - md5name = "7bf5a8a28cc69bcfa8cb214f2c3095703c6b73ac5fba4d5480c205331d9494df-libwebp-1.2.4.tar.gz"; + md5name = "64ac4614db292ae8c5aa26de0295bf1623dbb3985054cb656c55e67431def17c-libwebp-1.3.0.tar.gz"; } { name = "xmlsec1-1.2.37.tar.gz"; @@ -518,11 +518,11 @@ md5name = "5f8dfbcb6d1e56bddd0b5ec2e00a3d0ca5342a9f57c24dffde5c796b2be2871c-xmlsec1-1.2.37.tar.gz"; } { - name = "libxml2-2.10.3.tar.xz"; - url = "https://dev-www.libreoffice.org/src/libxml2-2.10.3.tar.xz"; - sha256 = "5d2cc3d78bec3dbe212a9d7fa629ada25a7da928af432c93060ff5c17ee28a9c"; + name = "libxml2-2.10.4.tar.xz"; + url = "https://dev-www.libreoffice.org/src/libxml2-2.10.4.tar.xz"; + sha256 = "ed0c91c5845008f1936739e4eee2035531c1c94742c6541f44ee66d885948d45"; md5 = ""; - md5name = "5d2cc3d78bec3dbe212a9d7fa629ada25a7da928af432c93060ff5c17ee28a9c-libxml2-2.10.3.tar.xz"; + md5name = "ed0c91c5845008f1936739e4eee2035531c1c94742c6541f44ee66d885948d45-libxml2-2.10.4.tar.xz"; } { name = "libxslt-1.1.35.tar.xz"; @@ -784,11 +784,11 @@ md5name = "2465b0b662fdc5d4e3bebcdc9a79027713fb629ca2bff04a3c9251fdec42dd09-libwpd-0.10.3.tar.xz"; } { - name = "libwpg-0.3.3.tar.xz"; - url = "https://dev-www.libreoffice.org/src/libwpg-0.3.3.tar.xz"; - sha256 = "99b3f7f8832385748582ab8130fbb9e5607bd5179bebf9751ac1d51a53099d1c"; + name = "libwpg-0.3.4.tar.xz"; + url = "https://dev-www.libreoffice.org/src/libwpg-0.3.4.tar.xz"; + sha256 = "b55fda9440d1e070630eb2487d8b8697cf412c214a27caee9df69cec7c004de3"; md5 = ""; - md5name = "99b3f7f8832385748582ab8130fbb9e5607bd5179bebf9751ac1d51a53099d1c-libwpg-0.3.3.tar.xz"; + md5name = "b55fda9440d1e070630eb2487d8b8697cf412c214a27caee9df69cec7c004de3-libwpg-0.3.4.tar.xz"; } { name = "libwps-0.4.12.tar.xz"; diff --git a/pkgs/applications/office/libreoffice/src-fresh/primary.nix b/pkgs/applications/office/libreoffice/src-fresh/primary.nix index d8e6b3269ded0..e9dc428749bb8 100644 --- a/pkgs/applications/office/libreoffice/src-fresh/primary.nix +++ b/pkgs/applications/office/libreoffice/src-fresh/primary.nix @@ -8,8 +8,8 @@ rec { major = "7"; minor = "5"; - patch = "2"; - tweak = "2"; + patch = "4"; + tweak = "1"; subdir = "${major}.${minor}.${patch}"; @@ -17,13 +17,13 @@ rec { src = fetchurl { url = "https://download.documentfoundation.org/libreoffice/src/${subdir}/libreoffice-${version}.tar.xz"; - hash = "sha256-YYuQfdNrj4DgfdwTpgXo58EhJh323cmmQ24FQUMkLdM="; + hash = "sha256-dWE7yXldkiEnsJOxfxyZ9p05eARqexgRRgNV158VVF4="; }; # FIXME rename translations = fetchSrc { name = "translations"; - hash = "sha256-IPdXQibM+xz1Wok/XnRxyNVqvwh4BarWCH9FceylN/0="; + hash = "sha256-dv3L8DtdxZcwmeXnqtTtwIpOvwZg3aH3VvJBiiZzbh0="; }; # the "dictionaries" archive is not used for LO build because we already build hunspellDicts packages from @@ -31,6 +31,6 @@ rec { help = fetchSrc { name = "help"; - hash = "sha256-h1uQ3EaroSyz6uCU7SFC06TuGMvaXm97/v9zCKvNxDY="; + hash = "sha256-2CrGEyK5AQEAo1Qz1ACmvMH7BaOubW5BNLWv3fDEdOY="; }; } diff --git a/pkgs/applications/office/libreoffice/src-still/download.nix b/pkgs/applications/office/libreoffice/src-still/download.nix index 45c3d3494989a..c74bd2716e8ee 100644 --- a/pkgs/applications/office/libreoffice/src-still/download.nix +++ b/pkgs/applications/office/libreoffice/src-still/download.nix @@ -98,11 +98,11 @@ md5name = "89c5c6665337f56fd2db36bc3805a5619709d51fb136e51937072f63fcc717a7-cppunit-1.15.1.tar.gz"; } { - name = "curl-7.88.1.tar.xz"; - url = "https://dev-www.libreoffice.org/src/curl-7.88.1.tar.xz"; - sha256 = "1dae31b2a7c1fe269de99c0c31bb488346aab3459b5ffca909d6938249ae415f"; + name = "curl-8.0.1.tar.xz"; + url = "https://dev-www.libreoffice.org/src/curl-8.0.1.tar.xz"; + sha256 = "0a381cd82f4d00a9a334438b8ca239afea5bfefcfa9a1025f2bf118e79e0b5f0"; md5 = ""; - md5name = "1dae31b2a7c1fe269de99c0c31bb488346aab3459b5ffca909d6938249ae415f-curl-7.88.1.tar.xz"; + md5name = "0a381cd82f4d00a9a334438b8ca239afea5bfefcfa9a1025f2bf118e79e0b5f0-curl-8.0.1.tar.xz"; } { name = "libe-book-0.1.3.tar.xz"; @@ -329,11 +329,11 @@ md5name = "b8e892d8627c41888ff121e921455b9e2d26836978f2359173d19825da62b8fc-graphite2-minimal-1.3.14.tgz"; } { - name = "harfbuzz-4.3.0.tar.xz"; - url = "https://dev-www.libreoffice.org/src/harfbuzz-4.3.0.tar.xz"; - sha256 = "a49628f4c4c8e6d8df95ef44935a93446cf2e46366915b0e3ca30df21fffb530"; + name = "harfbuzz-7.1.0.tar.xz"; + url = "https://dev-www.libreoffice.org/src/harfbuzz-7.1.0.tar.xz"; + sha256 = "f135a61cd464c9ed6bc9823764c188f276c3850a8dc904628de2a87966b7077b"; md5 = ""; - md5name = "a49628f4c4c8e6d8df95ef44935a93446cf2e46366915b0e3ca30df21fffb530-harfbuzz-4.3.0.tar.xz"; + md5name = "f135a61cd464c9ed6bc9823764c188f276c3850a8dc904628de2a87966b7077b-harfbuzz-7.1.0.tar.xz"; } { name = "hsqldb_1_8_0.zip"; @@ -546,11 +546,11 @@ md5name = "52ced4943f35bd7d0818a38298c1528ca4ac8a54440fd71134a07d2d1370a262-xmlsec1-1.2.34.tar.gz"; } { - name = "libxml2-2.10.3.tar.xz"; - url = "https://dev-www.libreoffice.org/src/libxml2-2.10.3.tar.xz"; - sha256 = "5d2cc3d78bec3dbe212a9d7fa629ada25a7da928af432c93060ff5c17ee28a9c"; + name = "libxml2-2.10.4.tar.xz"; + url = "https://dev-www.libreoffice.org/src/libxml2-2.10.4.tar.xz"; + sha256 = "ed0c91c5845008f1936739e4eee2035531c1c94742c6541f44ee66d885948d45"; md5 = ""; - md5name = "5d2cc3d78bec3dbe212a9d7fa629ada25a7da928af432c93060ff5c17ee28a9c-libxml2-2.10.3.tar.xz"; + md5name = "ed0c91c5845008f1936739e4eee2035531c1c94742c6541f44ee66d885948d45-libxml2-2.10.4.tar.xz"; } { name = "libxslt-1.1.35.tar.xz"; diff --git a/pkgs/applications/office/libreoffice/src-still/primary.nix b/pkgs/applications/office/libreoffice/src-still/primary.nix index 184fb6b651957..e0cbdc5da9af4 100644 --- a/pkgs/applications/office/libreoffice/src-still/primary.nix +++ b/pkgs/applications/office/libreoffice/src-still/primary.nix @@ -8,7 +8,7 @@ rec { major = "7"; minor = "4"; - patch = "6"; + patch = "7"; tweak = "2"; subdir = "${major}.${minor}.${patch}"; @@ -17,13 +17,13 @@ rec { src = fetchurl { url = "https://download.documentfoundation.org/libreoffice/src/${subdir}/libreoffice-${version}.tar.xz"; - hash = "sha256-GHOuiYbww/DSK/DpSqAaB/jgppKacjGSYIOPqGnmIJM="; + hash = "sha256-dD2R8qE4png4D6eo7LWyQB2ZSwZ7MwdQ8DrY9SOi+yA="; }; # FIXME rename translations = fetchSrc { name = "translations"; - hash = "sha256-ES4r9Pk7DYeFTPg8iPXQP84SpGn6x8G10Pfs1WQVixM="; + hash = "sha256-7wea0EClmvwcPvgQDGagkOF7eBVvYTZScCEEpirdXnE="; }; # the "dictionaries" archive is not used for LO build because we already build hunspellDicts packages from @@ -31,6 +31,6 @@ rec { help = fetchSrc { name = "help"; - hash = "sha256-o0JnybhmMFZhcbTrWRllJ+J9+tcUbFLcbftymgECT9E="; + hash = "sha256-vcQWE3mBZx2sBQ9KzTh6zM7277mK9twfvyESTzTiII8="; }; } diff --git a/pkgs/applications/office/morgen/default.nix b/pkgs/applications/office/morgen/default.nix index 20928b71d7a38..3a5d95edd2f67 100644 --- a/pkgs/applications/office/morgen/default.nix +++ b/pkgs/applications/office/morgen/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { pname = "morgen"; - version = "2.7.0"; + version = "2.7.2"; src = fetchurl { url = "https://download.todesktop.com/210203cqcj00tw1/morgen-${version}.deb"; - sha256 = "sha256-v01mytnyJA1GQ/9/+7/HDIbwW1Jl4dpgf+84k0sRf4o="; + sha256 = "sha256-s3gGDBxT0kHEuWiE79P/CKMknTljIdxzAP4GkS+hk+g="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/office/paperwork/paperwork-gtk.nix b/pkgs/applications/office/paperwork/paperwork-gtk.nix index 6c09681137e74..36d3b0056b4a2 100644 --- a/pkgs/applications/office/paperwork/paperwork-gtk.nix +++ b/pkgs/applications/office/paperwork/paperwork-gtk.nix @@ -66,7 +66,9 @@ python3Packages.buildPythonApplication rec { postInstall = '' # paperwork-shell needs to be re-wrapped with access to paperwork - cp ${python3Packages.paperwork-shell}/bin/.paperwork-cli-wrapped $out/bin/paperwork-cli + for exe in paperwork-cli paperwork-json; do + cp ${python3Packages.paperwork-shell}/bin/.$exe-wrapped $out/bin/$exe + done # install desktop files and icons XDG_DATA_HOME=$out/share $out/bin/paperwork-gtk install --user @@ -120,6 +122,9 @@ python3Packages.buildPythonApplication rec { --config-file=${dbus}/share/dbus-1/session.conf \ $out/bin/paperwork-gtk chkdeps + $out/bin/paperwork-cli chkdeps + $out/bin/paperwork-json chkdeps + # content of make test, without the dep on make install python -m unittest discover --verbose -s tests diff --git a/pkgs/applications/office/portfolio/default.nix b/pkgs/applications/office/portfolio/default.nix index 1c66c7ddee07e..7af4d5fb0b7e2 100644 --- a/pkgs/applications/office/portfolio/default.nix +++ b/pkgs/applications/office/portfolio/default.nix @@ -27,11 +27,11 @@ let in stdenv.mkDerivation rec { pname = "PortfolioPerformance"; - version = "0.62.1"; + version = "0.63.1"; src = fetchurl { url = "https://github.com/buchen/portfolio/releases/download/${version}/PortfolioPerformance-${version}-linux.gtk.x86_64.tar.gz"; - hash = "sha256-tENX2F+kZSrltvaZm3ZaUld3es8Bt8LCpEVGxAOFVm0="; + hash = "sha256-zMlRxj10NS47Q88UWM1s0WvhhQXS4I00JyzmigyYOmE="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/radio/abracadabra/default.nix b/pkgs/applications/radio/abracadabra/default.nix new file mode 100644 index 0000000000000..5058a740b3d85 --- /dev/null +++ b/pkgs/applications/radio/abracadabra/default.nix @@ -0,0 +1,50 @@ +{ lib, stdenv, fetchFromGitHub, cmake, wrapQtAppsHook +, qtbase, qtmultimedia, qttools +, faad2, mpg123, portaudio +, libusb1, rtl-sdr, airspy, soapysdr-with-plugins +} : + +stdenv.mkDerivation rec { + pname = "abracadabra"; + version = "2.1.1"; + + src = fetchFromGitHub { + owner = "KejPi"; + repo = "AbracaDABra"; + rev = "v${version}"; + sha256 = "sha256-pjcao8KTEmgE54dUBxLLnStszR32LryfciMKScBOGdc="; + }; + + nativeBuildInputs = [ + cmake + wrapQtAppsHook + qttools + ]; + + buildInputs = [ + qtbase + qtmultimedia + faad2 + mpg123 + portaudio + libusb1 + rtl-sdr + airspy + soapysdr-with-plugins + ]; + + cmakeFlags = [ + "-DAIRSPY=ON" + "-DSOAPYSDR=ON" + ]; + + meta = with lib; { + description = "DAB/DAB+ radio application"; + homepage = "https://github.com/KejPi/AbracaDABra"; + platforms = platforms.linux; + license = licenses.mit; + maintainers = [ maintainers.markuskowa ]; + mainProgram = "AbracaDABra"; + }; +} + diff --git a/pkgs/applications/radio/cloudlog/default.nix b/pkgs/applications/radio/cloudlog/default.nix index 7e4c409cdffc4..669a596ccbde7 100644 --- a/pkgs/applications/radio/cloudlog/default.nix +++ b/pkgs/applications/radio/cloudlog/default.nix @@ -8,13 +8,13 @@ stdenvNoCC.mkDerivation rec { pname = "cloudlog"; - version = "2.4.2"; + version = "2.4.3"; src = fetchFromGitHub { owner = "magicbug"; repo = "Cloudlog"; rev = version; - sha256 = "sha256-btfHHrb7m6ITWe/18u2pmZiZKpKebKMThqcXFIvO/P8="; + sha256 = "sha256-2L+Yp8yxhmoVh34cW1s5Xy1f0X2xUo3UP32XcAV2LsM="; }; postPath = '' diff --git a/pkgs/applications/radio/flamp/default.nix b/pkgs/applications/radio/flamp/default.nix new file mode 100644 index 0000000000000..8eb813af97bf2 --- /dev/null +++ b/pkgs/applications/radio/flamp/default.nix @@ -0,0 +1,41 @@ +{ lib +, stdenv +, fetchgit +, autoreconfHook +, pkg-config +, fltk13 +, libsndfile +, gettext +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "flamp"; + version = "2.2.07"; + + src = fetchgit { + url = "https://git.code.sf.net/p/fldigi/flamp"; + rev = "v${finalAttrs.version}"; + hash = "sha256-BnKL1iwaw1iJC5qcGCvdMr461n0BSYxk61dbAnhpz2c="; + }; + + nativeBuildInputs = [ + autoreconfHook + pkg-config + gettext + ]; + + buildInputs = [ + fltk13 + ]; + + enableParallelBuilding = true; + + meta = with lib; { + description = "Digital modem program"; + homepage = "https://sourceforge.net/projects/fldigi/"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ stteague ]; + platforms = platforms.unix; + broken = stdenv.system == "x86_64-darwin"; + }; +}) diff --git a/pkgs/applications/radio/flrig/default.nix b/pkgs/applications/radio/flrig/default.nix index 1c559b1694d5d..3da74a1116493 100644 --- a/pkgs/applications/radio/flrig/default.nix +++ b/pkgs/applications/radio/flrig/default.nix @@ -8,12 +8,12 @@ }: stdenv.mkDerivation rec { - version = "1.4.8"; + version = "2.0.01"; pname = "flrig"; src = fetchurl { url = "mirror://sourceforge/fldigi/${pname}-${version}.tar.gz"; - sha256 = "sha256-7aqjNbcAE1ATb5Zl+ziVb7O86nqlFwdpsYm9RoX51rg="; + sha256 = "sha256-TFZZaTtU7TLBPA7jpBTu2JtkZpxjG57Rin8OVFedHwA="; }; buildInputs = [ diff --git a/pkgs/applications/radio/freedv/default.nix b/pkgs/applications/radio/freedv/default.nix index 1138cd8c1945e..cecacc5d1c480 100644 --- a/pkgs/applications/radio/freedv/default.nix +++ b/pkgs/applications/radio/freedv/default.nix @@ -15,6 +15,7 @@ , speexdsp , hamlib_4 , wxGTK32 +, sioclient , pulseSupport ? config.pulseaudio or stdenv.isLinux , AppKit , AVFoundation @@ -24,13 +25,13 @@ stdenv.mkDerivation rec { pname = "freedv"; - version = "1.8.9"; + version = "1.8.10.1"; src = fetchFromGitHub { owner = "drowe67"; repo = "freedv-gui"; rev = "v${version}"; - hash = "sha256-HDHXVTkXC1fCqj4lnxURmXvQNtwDX4zA6/QFnYceUI4="; + hash = "sha256-m8Myo/5jt+rnV8cAR2p20aAHnbatTkIXGSVhLebAP9g="; }; postPatch = lib.optionalString stdenv.isDarwin '' @@ -55,6 +56,7 @@ stdenv.mkDerivation rec { speexdsp hamlib_4 wxGTK32 + sioclient ] ++ (if pulseSupport then [ libpulseaudio ] else [ portaudio ]) ++ lib.optionals stdenv.isDarwin [ AppKit diff --git a/pkgs/applications/radio/sdrangel/default.nix b/pkgs/applications/radio/sdrangel/default.nix index e203f219bb4d0..b1348016a0f98 100644 --- a/pkgs/applications/radio/sdrangel/default.nix +++ b/pkgs/applications/radio/sdrangel/default.nix @@ -50,13 +50,13 @@ stdenv.mkDerivation rec { pname = "sdrangel"; - version = "7.14.1"; + version = "7.14.2"; src = fetchFromGitHub { owner = "f4exb"; repo = "sdrangel"; rev = "v${version}"; - hash = "sha256-AsKjsoIyGjGpRGA+pYQsO4x2C5Rb7xaG+Q0cS3xANcM="; + hash = "sha256-A9/uOecV1qRbAGcKI1brPFsbjfJG/8/zKrMwKMGw9rE="; }; nativeBuildInputs = [ cmake ninja pkg-config wrapQtAppsHook ]; diff --git a/pkgs/applications/science/biology/diamond/default.nix b/pkgs/applications/science/biology/diamond/default.nix index cec34547c62c8..76ef4b7784c48 100644 --- a/pkgs/applications/science/biology/diamond/default.nix +++ b/pkgs/applications/science/biology/diamond/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "diamond"; - version = "2.1.6"; + version = "2.1.7"; src = fetchFromGitHub { owner = "bbuchfink"; repo = "diamond"; rev = "v${version}"; - sha256 = "sha256-2FxJTF/fF/Xi0TglXDlf3sSwncv2f6gc129nTbk8YU0="; + sha256 = "sha256-5AjP7zH0WZhJqhcjgQjeK/WPCqy1Tl1gXXqRsHbqkys="; }; diff --git a/pkgs/applications/science/biology/fastp/default.nix b/pkgs/applications/science/biology/fastp/default.nix index 0fd3dded09b31..e7fc0d4a35f1f 100644 --- a/pkgs/applications/science/biology/fastp/default.nix +++ b/pkgs/applications/science/biology/fastp/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "fastp"; - version = "0.23.3"; + version = "0.23.4"; src = fetchFromGitHub { owner = "OpenGene"; repo = "fastp"; rev = "v${version}"; - sha256 = "sha256-9YHm5LIKJJpMavlWMZXD5ZgTgT5w9eXuXwQVa/prux8="; + sha256 = "sha256-hkCo8CiZNJuVcL9Eg/R7YzM7/FEcGEnovV325oWa7y8="; }; buildInputs = [ zlib libdeflate isa-l ]; diff --git a/pkgs/applications/science/biology/igv/default.nix b/pkgs/applications/science/biology/igv/default.nix index ec97f0e6aa31d..c9af0483da2a4 100644 --- a/pkgs/applications/science/biology/igv/default.nix +++ b/pkgs/applications/science/biology/igv/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { pname = "igv"; - version = "2.16.0"; + version = "2.16.1"; src = fetchzip { url = "https://data.broadinstitute.org/igv/projects/downloads/${lib.versions.majorMinor version}/IGV_${version}.zip"; - sha256 = "sha256-pfFUtPgHzTWMm3sh4un8SwSYF8HM30HbAQznxlu4Irw="; + sha256 = "sha256-/3ielakIRdm9/iGBKSk+fTyzYRnsMTdCdsKghnziVwA="; }; installPhase = '' diff --git a/pkgs/applications/science/biology/iqtree/default.nix b/pkgs/applications/science/biology/iqtree/default.nix index f0f03dc2b0bce..abf9cfba45fd7 100644 --- a/pkgs/applications/science/biology/iqtree/default.nix +++ b/pkgs/applications/science/biology/iqtree/default.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { pname = "iqtree"; - version = "2.2.2.4"; + version = "2.2.2.6"; src = fetchFromGitHub { owner = "iqtree"; repo = "iqtree2"; rev = "v${version}"; - hash = "sha256-5NF0Ej3M19Vd08xfmOHRhZkM1YGQ/ZlFj0HsSw1sw1w="; + hash = "sha256-dce7JOPZaosRP99/xRfz88EwXR9nYXK6Z4t2i5Uje1w="; fetchSubmodules = true; }; diff --git a/pkgs/applications/science/electronics/dataexplorer/default.nix b/pkgs/applications/science/electronics/dataexplorer/default.nix index 33930ff08d72e..76f3ee826986b 100644 --- a/pkgs/applications/science/electronics/dataexplorer/default.nix +++ b/pkgs/applications/science/electronics/dataexplorer/default.nix @@ -8,11 +8,11 @@ stdenv.mkDerivation rec { pname = "dataexplorer"; - version = "3.7.7"; + version = "3.7.8"; src = fetchurl { url = "mirror://savannah/dataexplorer/dataexplorer-${version}-src.tar.gz"; - sha256 = "sha256-tZ/+m+CeOE+84LbqXYPBGSMRkRU2oGnJpAP5OQkYmfY="; + sha256 = "sha256-NiCtUqavYNUXsTkgi2V9u2qn8dBTLTEm52ju450d5Lw="; }; nativeBuildInputs = [ ant makeWrapper ]; diff --git a/pkgs/applications/science/electronics/gerbv/default.nix b/pkgs/applications/science/electronics/gerbv/default.nix index a8eb0ac4c082a..963a78bf06ff1 100644 --- a/pkgs/applications/science/electronics/gerbv/default.nix +++ b/pkgs/applications/science/electronics/gerbv/default.nix @@ -1,31 +1,55 @@ -{ lib, stdenv, fetchFromGitHub, pkg-config, gettext, libtool, automake, autoconf, cairo, gtk2-x11, autoreconfHook }: +{ lib +, stdenv +, autoconf +, automake +, autoreconfHook +, cairo +, fetchFromGitHub +, gettext +, gtk2-x11 +, libtool +, pkg-config +}: stdenv.mkDerivation rec { pname = "gerbv"; - version = "2.9.6"; + version = "2.9.7"; src = fetchFromGitHub { owner = "gerbv"; repo = pname; - rev = "v${version}"; - hash = "sha256-HNhrnXOBlzfO/roWzTsg0RcJPb0c7RuJepankB5zNts="; + rev = "refs/tags/v${version}"; + hash = "sha256-KxKNMWhWwmlIpueDOSWAWADEHFha8axywPJ6rRz0jIg="; }; postPatch = '' sed -i '/AC_INIT/s/m4_esyscmd.*/${version}])/' configure.ac ''; - nativeBuildInputs = [ autoreconfHook pkg-config automake autoconf ]; - buildInputs = [ gettext libtool cairo gtk2-x11 ]; + nativeBuildInputs = [ + autoconf + automake + autoreconfHook + pkg-config + ]; - configureFlags = ["--disable-update-desktop-database"]; + buildInputs = [ + cairo + gettext + gtk2-x11 + libtool + ]; + + configureFlags = [ + "--disable-update-desktop-database" + ]; meta = with lib; { description = "A Gerber (RS-274X) viewer"; homepage = "https://gerbv.github.io/"; changelog = "https://github.com/gerbv/gerbv/releases/tag/v${version}"; + license = licenses.gpl2Plus; maintainers = with maintainers; [ mog ]; platforms = platforms.unix; - license = licenses.gpl2; }; } diff --git a/pkgs/applications/science/logic/alt-ergo/default.nix b/pkgs/applications/science/logic/alt-ergo/default.nix index 75288b5ff80bf..ce084c1f4a733 100644 --- a/pkgs/applications/science/logic/alt-ergo/default.nix +++ b/pkgs/applications/science/logic/alt-ergo/default.nix @@ -2,7 +2,7 @@ let pname = "alt-ergo"; - version = "2.4.2"; + version = "2.4.3"; configureScript = "ocaml unix.cma configure.ml"; @@ -10,7 +10,7 @@ let owner = "OCamlPro"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-8pJ/1UAbheQaLFs5Uubmmf5D0oFJiPxF6e2WTZgRyAc="; + hash = "sha256-2XARGr8rLiPMOM0rBBoRv5tZvKYtkLkJctGqLYkMe7Q="; }; in @@ -20,7 +20,7 @@ let alt-ergo-lib = ocamlPackages.buildDunePackage rec 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+[[package]] +name = "windows_x86_64_gnu" +version = "0.42.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "bf7b1b21b5362cbc318f686150e5bcea75ecedc74dd157d874d754a2ca44b0ed" + +[[package]] +name = "windows_x86_64_gnullvm" +version = "0.42.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "09d525d2ba30eeb3297665bd434a54297e4170c7f1a44cad4ef58095b4cd2028" + +[[package]] +name = "windows_x86_64_msvc" +version = "0.42.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f40009d85759725a34da6d89a94e63d7bdc50a862acf0dbc7c8e488f1edcb6f5" diff --git a/pkgs/applications/science/logic/egglog/default.nix b/pkgs/applications/science/logic/egglog/default.nix new file mode 100644 index 0000000000000..c05ea10db2bb6 --- /dev/null +++ b/pkgs/applications/science/logic/egglog/default.nix @@ -0,0 +1,32 @@ +{ lib +, rustPlatform +, fetchFromGitHub +}: + +rustPlatform.buildRustPackage { + pname = "egglog"; + version = "unstable-2023-05-22"; + + src = fetchFromGitHub { + owner = "egraphs-good"; + repo = "egglog"; + rev = "5242b50051c339d55009860d4dff80125fdcedfd"; + hash = "sha256-N04CfITLEr4D4s6bUi0eRQdAVy6Ztq3Ml0365of7i0U="; + }; + + cargoLock = { + lockFile = ./Cargo.lock; + outputHashes = { + "symbol_table-0.2.0" = "sha256-f9UclMOUig+N5L3ibBXou0pJ4S/CQqtaji7tnebVbis="; + "symbolic_expressions-5.0.3" = "sha256-mSxnhveAItlTktQC4hM8o6TYjgtCUgkdZj7i6MR4Oeo="; + }; + }; + + meta = with lib; { + description = "A fixpoint reasoning system that unifies Datalog and equality saturation"; + homepage = "https://github.com/egraphs-good/egglog"; + license = licenses.mit; + maintainers = with maintainers; [ figsoda ]; + mainProgram = "egg-smol"; + }; +} diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix index 429f9d767d70d..98a3b192f6452 100644 --- a/pkgs/applications/science/math/R/default.nix +++ b/pkgs/applications/science/math/R/default.nix @@ -15,13 +15,13 @@ assert (!blas.isILP64) && (!lapack.isILP64); stdenv.mkDerivation (finalAttrs: { pname = "R"; - version = "4.2.3"; + version = "4.3.0"; src = let inherit (finalAttrs) pname version; in fetchurl { url = "https://cran.r-project.org/src/base/R-${lib.versions.major version}/${pname}-${version}.tar.gz"; - sha256 = "sha256-VeSpptQ74xTiwD0CZqb6VESv3OULMDv8O4Kzl5UW4HQ="; + sha256 = "sha256-RdzEi2zyfTYQIPd/3ho5IJ6Ze4FAKzZjyhwBAFampgk="; }; dontUseImakeConfigure = true; @@ -30,7 +30,7 @@ stdenv.mkDerivation (finalAttrs: { buildInputs = [ bzip2 gfortran libX11 libXmu libXt libXt libjpeg libpng libtiff ncurses pango pcre2 perl readline texLive xz zlib less texinfo graphviz icu - bison imake which blas lapack curl tcl tk jdk + bison imake which blas lapack curl tcl tk jdk tzdata ] ++ lib.optionals stdenv.isDarwin [ Cocoa Foundation libobjc libcxx ]; patches = [ diff --git a/pkgs/applications/science/math/calc/default.nix b/pkgs/applications/science/math/calc/default.nix index 13ccdc86808e7..4f216a8aa3ac8 100644 --- a/pkgs/applications/science/math/calc/default.nix +++ b/pkgs/applications/science/math/calc/default.nix @@ -10,14 +10,14 @@ stdenv.mkDerivation (finalAttrs: { pname = "calc"; - version = "2.14.1.5"; + version = "2.14.1.6"; src = fetchurl { urls = [ "https://github.com/lcn2/calc/releases/download/v${finalAttrs.version}/calc-${finalAttrs.version}.tar.bz2" "http://www.isthe.com/chongo/src/calc/calc-${finalAttrs.version}.tar.bz2" ]; - hash = "sha256-bPacYnEJBdQsIP+Z8D/ODskyEcvhgAy3ra4wasYMo6A="; + hash = "sha256-zlmzCCltGB3ipgWBF9vu2szmAZguPDiR2K3xdTnWf0A="; }; postPatch = '' diff --git a/pkgs/applications/science/math/mathematica/10.nix b/pkgs/applications/science/math/mathematica/10.nix index d1397d228df00..e5ab259b8f70b 100644 --- a/pkgs/applications/science/math/mathematica/10.nix +++ b/pkgs/applications/science/math/mathematica/10.nix @@ -74,7 +74,8 @@ stdenv.mkDerivation rec { + lib.optionalString (stdenv.hostPlatform.system == "x86_64-linux") (":" + lib.makeSearchPathOutput "lib" "lib64" buildInputs); - phases = "unpackPhase installPhase fixupPhase"; + dontConfigure = true; + dontBuild = true; unpackPhase = '' echo "=== Extracting makeself archive ===" diff --git a/pkgs/applications/science/math/mathematica/11.nix b/pkgs/applications/science/math/mathematica/11.nix index 50f2644a10b72..5b9460f76e06d 100644 --- a/pkgs/applications/science/math/mathematica/11.nix +++ b/pkgs/applications/science/math/mathematica/11.nix @@ -75,7 +75,8 @@ stdenv.mkDerivation rec { + lib.optionalString (stdenv.hostPlatform.system == "x86_64-linux") (":" + lib.makeSearchPathOutput "lib" "lib64" buildInputs); - phases = "unpackPhase installPhase fixupPhase"; + dontConfigure = true; + dontBuild = true; unpackPhase = '' echo "=== Extracting makeself archive ===" diff --git a/pkgs/applications/science/math/mathematica/9.nix b/pkgs/applications/science/math/mathematica/9.nix index c3d74d8a00277..c2fc07c532fc9 100644 --- a/pkgs/applications/science/math/mathematica/9.nix +++ b/pkgs/applications/science/math/mathematica/9.nix @@ -64,7 +64,8 @@ stdenv.mkDerivation rec { + lib.optionalString (stdenv.hostPlatform.system == "x86_64-linux") (":" + lib.makeSearchPathOutput "lib" "lib64" buildInputs); - phases = "unpackPhase installPhase fixupPhase"; + dontConfigure = true; + dontBuild = true; unpackPhase = '' echo "=== Extracting makeself archive ===" diff --git a/pkgs/applications/science/misc/boinc/default.nix b/pkgs/applications/science/misc/boinc/default.nix index 20512617a379b..625de3a3a8b39 100644 --- a/pkgs/applications/science/misc/boinc/default.nix +++ b/pkgs/applications/science/misc/boinc/default.nix @@ -26,14 +26,14 @@ stdenv.mkDerivation rec { pname = "boinc"; - version = "7.22.1"; + version = "7.22.2"; src = fetchFromGitHub { name = "${pname}-${version}-src"; owner = "BOINC"; repo = "boinc"; rev = "client_release/${lib.versions.majorMinor version}/${version}"; - hash = "sha256-DYbcWBJEjSJWRXNdumDhhybKSs8ofyREWqj2ghrvmBE="; + hash = "sha256-9GgvyYiDfppRuDFfxn50e+YZeSX0SLKSfo31lWx2FBs="; }; nativeBuildInputs = [ libtool automake autoconf m4 pkg-config ]; diff --git a/pkgs/applications/terminal-emulators/alacritty/default.nix b/pkgs/applications/terminal-emulators/alacritty/default.nix index dcddc2f5e187b..9f20a2d0576e4 100644 --- a/pkgs/applications/terminal-emulators/alacritty/default.nix +++ b/pkgs/applications/terminal-emulators/alacritty/default.nix @@ -35,6 +35,7 @@ let expat fontconfig freetype + ] ++ lib.optionals stdenv.isLinux [ libGL xorg.libX11 xorg.libXcursor @@ -42,7 +43,6 @@ let xorg.libXrandr xorg.libXxf86vm xorg.libxcb - ] ++ lib.optionals stdenv.isLinux [ libxkbcommon wayland ]; diff --git a/pkgs/applications/terminal-emulators/kitty/themes.nix b/pkgs/applications/terminal-emulators/kitty/themes.nix index e4be8b5efe6ce..07563345bd1a0 100644 --- a/pkgs/applications/terminal-emulators/kitty/themes.nix +++ b/pkgs/applications/terminal-emulators/kitty/themes.nix @@ -5,13 +5,13 @@ stdenvNoCC.mkDerivation rec { pname = "kitty-themes"; - version = "unstable-2023-03-08"; + version = "unstable-2023-06-01"; src = fetchFromGitHub { owner = "kovidgoyal"; repo = "kitty-themes"; - rev = "c01fcbd694353507c3cc7f657179bad1f32140a7"; - hash = "sha256-heJayOz/2Bey/zAwL2PR1OsfGyCPqMyxT1XzwHLhQ0w="; + rev = "f765eb1715d79c6cb3ad3d571342d612f21b810e"; + hash = "sha256-Y3N8cyqEsY/kB2xMIlPYnbuYUs8grzepPx/11maG4bo="; }; dontConfigure = true; diff --git a/pkgs/applications/terminal-emulators/roxterm/default.nix b/pkgs/applications/terminal-emulators/roxterm/default.nix index 7444a8627b799..72b40c8cd2de3 100644 --- a/pkgs/applications/terminal-emulators/roxterm/default.nix +++ b/pkgs/applications/terminal-emulators/roxterm/default.nix @@ -33,7 +33,7 @@ stdenv.mkDerivation rec { Tabbed, VTE-based terminal emulator. Similar to gnome-terminal without the dependencies on Gnome. ''; - maintainers = with maintainers; [ cdepillabout ]; + maintainers = with maintainers; [ ]; platforms = platforms.linux; }; } diff --git a/pkgs/applications/terminal-emulators/xterm/default.nix b/pkgs/applications/terminal-emulators/xterm/default.nix index 78c64e9ca3c3e..aad630f384ec1 100644 --- a/pkgs/applications/terminal-emulators/xterm/default.nix +++ b/pkgs/applications/terminal-emulators/xterm/default.nix @@ -4,14 +4,14 @@ stdenv.mkDerivation rec { pname = "xterm"; - version = "379"; + version = "380"; src = fetchurl { urls = [ "ftp://ftp.invisible-island.net/xterm/${pname}-${version}.tgz" "https://invisible-mirror.net/archives/xterm/${pname}-${version}.tgz" ]; - hash = "sha256-p93ydO6EuX+xKDZ1AJ1Tyi0CoP/VzlpRGNr8NiPrsxA="; + hash = "sha256-DB3B+oAPpktcWNFt25BecAsnylOKZb6MA7K6V2EQbDg="; }; strictDeps = true; diff --git a/pkgs/applications/version-management/delta/default.nix b/pkgs/applications/version-management/delta/default.nix index c02a9af2538ec..79c511ec2c8c4 100644 --- a/pkgs/applications/version-management/delta/default.nix +++ b/pkgs/applications/version-management/delta/default.nix @@ -1,38 +1,47 @@ -{ stdenv -, lib -, fetchFromGitHub +{ lib , rustPlatform +, fetchFromGitHub , installShellFiles -, DiskArbitration -, Foundation -, libiconv -, Security +, pkg-config +, oniguruma +, stdenv +, darwin , git }: rustPlatform.buildRustPackage rec { pname = "delta"; - version = "0.15.1"; + version = "0.16.5"; src = fetchFromGitHub { owner = "dandavison"; repo = pname; rev = version; - sha256 = "sha256-rPtLvO6raBY6BfrP0erBaXD86W1JL8g4XC4VbkR4Pww="; + hash = "sha256-W6XtfXfOP8QfQ0t5hquFdYvCO9muE50N1fQsNtnOzfM="; }; - cargoSha256 = "sha256-raT8a8K05ZpiGuZdM1hNikGxqY6w0g8G1DohfybXD9s="; + cargoHash = "sha256-SNKbgEyelJCHKCaBRfCGc3RECGABtZzMC2rCbhzqZtU="; - nativeBuildInputs = [ installShellFiles ]; + nativeBuildInputs = [ + installShellFiles + pkg-config + ]; - buildInputs = lib.optionals stdenv.isDarwin [ DiskArbitration Foundation libiconv Security ]; + buildInputs = [ + oniguruma + ] ++ lib.optionals stdenv.isDarwin [ + darwin.apple_sdk_11_0.frameworks.Foundation + ]; nativeCheckInputs = [ git ]; + env = { + RUSTONIG_SYSTEM_LIBONIG = true; + }; + postInstall = '' - installShellCompletion --bash --name delta.bash etc/completion/completion.bash - installShellCompletion --zsh --name _delta etc/completion/completion.zsh - installShellCompletion --fish --name delta.fish etc/completion/completion.fish + installShellCompletion --cmd delta \ + etc/completion/completion.{bash,fish,zsh} ''; checkFlags = lib.optionals stdenv.isDarwin [ @@ -44,6 +53,6 @@ rustPlatform.buildRustPackage rec { description = "A syntax-highlighting pager for git"; changelog = "https://github.com/dandavison/delta/releases/tag/${version}"; license = licenses.mit; - maintainers = with maintainers; [ marsam zowoq SuperSandro2000 ]; + maintainers = with maintainers; [ marsam zowoq SuperSandro2000 figsoda ]; }; } diff --git a/pkgs/applications/version-management/dvc/default.nix b/pkgs/applications/version-management/dvc/default.nix index a63d94b9eae2d..03fd5e6f6c0f3 100644 --- a/pkgs/applications/version-management/dvc/default.nix +++ b/pkgs/applications/version-management/dvc/default.nix @@ -10,14 +10,14 @@ python3.pkgs.buildPythonApplication rec { pname = "dvc"; - version = "2.58.1"; + version = "2.58.2"; format = "pyproject"; src = fetchFromGitHub { owner = "iterative"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-n6tX7sHzyeIWnpFM08QosQ7y27SB9OKMuQeSB25lJRU="; + hash = "sha256-sq5jrGtUVe8R4ZdjwEBW9yEYBe8o1xyFVZGcZ+tMvCs="; }; pythonRelaxDeps = [ diff --git a/pkgs/applications/version-management/fossil/default.nix b/pkgs/applications/version-management/fossil/default.nix index 0dc2c26960463..4731355ac0f39 100644 --- a/pkgs/applications/version-management/fossil/default.nix +++ b/pkgs/applications/version-management/fossil/default.nix @@ -15,13 +15,13 @@ , withJson ? true }: -stdenv.mkDerivation rec { +stdenv.mkDerivation (finalAttrs: { pname = "fossil"; - version = "2.21"; + version = "2.22"; src = fetchurl { - url = "https://www.fossil-scm.org/home/tarball/version-${version}/fossil-${version}.tar.gz"; - hash = "sha256-wf7sp4ISTN52mSQHxw8s7//L4beLZtwkaJDYMVnvgIQ="; + url = "https://www.fossil-scm.org/home/tarball/version-${finalAttrs.version}/fossil-${finalAttrs.version}.tar.gz"; + hash = "sha256-gdgj/29dF1s4TfqE7roNBS2nOjfNZs1yt4bnFnEhDWs="; }; # required for build time tool `./tools/translate.c` @@ -67,4 +67,4 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ maggesi viric ]; platforms = platforms.all; }; -} +}) diff --git a/pkgs/applications/version-management/gerrit/default.nix b/pkgs/applications/version-management/gerrit/default.nix index 51d6265182544..8664808266021 100644 --- a/pkgs/applications/version-management/gerrit/default.nix +++ b/pkgs/applications/version-management/gerrit/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "gerrit"; - version = "3.7.2"; + version = "3.8.0"; src = fetchurl { url = "https://gerrit-releases.storage.googleapis.com/gerrit-${version}.war"; - sha256 = "sha256-XB5bplYpid2vxSjm1DCGYsd3d5kUk8PlnhFdCAORX6k="; + sha256 = "sha256-wial+K5eUZSJ+asFBLrFoJQOLWLHkl5ot4b4CIsg7Tc="; }; buildCommand = '' diff --git a/pkgs/applications/version-management/gh/default.nix b/pkgs/applications/version-management/gh/default.nix index dc668e3639f2f..35200a9dbf748 100644 --- a/pkgs/applications/version-management/gh/default.nix +++ b/pkgs/applications/version-management/gh/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "gh"; - version = "2.29.0"; + version = "2.30.0"; src = fetchFromGitHub { owner = "cli"; repo = "cli"; rev = "v${version}"; - hash = "sha256-OVZTHgzKGpz+F1hHRmbCgjMJSFFFjL9WQBqtx7vZIHc="; + hash = "sha256-eS0TrN/WWJvXzyDhGg4waNpRYp/Kt9kXmIfFs0F4oFQ="; }; - vendorHash = "sha256-iTPdOolvWINUSSYiPZAwn5ZF44x/x1tIWnKUHAn8ITA="; + vendorHash = "sha256-bTAg3HKX+m5/sDtXU5h2965T9xaosRmhKKixp84xPdk="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/applications/version-management/ghorg/default.nix b/pkgs/applications/version-management/ghorg/default.nix index ebf123d415346..122564451d773 100644 --- a/pkgs/applications/version-management/ghorg/default.nix +++ b/pkgs/applications/version-management/ghorg/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "ghorg"; - version = "1.9.4"; + version = "1.9.5"; src = fetchFromGitHub { owner = "gabrie30"; repo = "ghorg"; rev = "v${version}"; - sha256 = "sha256-J/oZrtm/Bs4SU/Wl9LEH0kMxkOEXR2g/Bod5QFoCudU="; + sha256 = "sha256-beFZRH5FG6aEvMhjsheeBHxqHRH0jkRt5FDYkeyrc2E="; }; doCheck = false; diff --git a/pkgs/applications/version-management/git-credential-keepassxc/default.nix b/pkgs/applications/version-management/git-credential-keepassxc/default.nix index 1595c470e2abe..986d491935b5c 100644 --- a/pkgs/applications/version-management/git-credential-keepassxc/default.nix +++ b/pkgs/applications/version-management/git-credential-keepassxc/default.nix @@ -12,16 +12,16 @@ rustPlatform.buildRustPackage rec { pname = "git-credential-keepassxc"; - version = "0.12.0"; + version = "0.13.0"; src = fetchFromGitHub { owner = "Frederick888"; repo = "git-credential-keepassxc"; rev = "v${version}"; - hash = "sha256-siVSZke+anVTaLiJVyDEKvgX+VmS0axa+4721nlgmiw="; + hash = "sha256-eu4Ff+7670gCO+j3WSRnvQ1aFXIx0nw1jAZXNuni2bU="; }; - cargoHash = "sha256-QMAAKkjWgM/UiOfkNMLQxyGEYYmiSvE0Pd8fZXYyN48="; + cargoHash = "sha256-DVMQLsiiaxMZtDqzqnMJQl91NCuMRSPEb8B6AttB4lE="; buildInputs = lib.optionals stdenv.isDarwin [ DiskArbitration Foundation ]; diff --git a/pkgs/applications/version-management/git-credential-oauth/default.nix b/pkgs/applications/version-management/git-credential-oauth/default.nix new file mode 100644 index 0000000000000..85125f62712c0 --- /dev/null +++ b/pkgs/applications/version-management/git-credential-oauth/default.nix @@ -0,0 +1,29 @@ +{ lib, buildGoModule, fetchFromGitHub }: + +buildGoModule rec { + pname = "git-credential-oauth"; + version = "0.7.0"; + + src = fetchFromGitHub { + owner = "hickford"; + repo = pname; + rev = "v${version}"; + hash = "sha256-f12PgTtfs/S9RI8+QFROkNqccRWeIW1/YkynqvKJc7I="; + }; + + ldflags = [ + "-s" + "-w" + "-X main.version=${version}" + ]; + + vendorHash = "sha256-9X7ti3NR5MKK0MpiyTOTO+EtdMuu4/TW/diHq9FjSHY="; + + meta = { + description = "Git credential helper that securely authenticates to GitHub, GitLab and BitBucket using OAuth"; + homepage = "https://github.com/hickford/git-credential-oauth"; + changelog = "https://github.com/hickford/git-credential-oauth/releases/tag/${src.rev}"; + license = lib.licenses.asl20; + maintainers = with lib.maintainers; [ shyim ]; + }; +} diff --git a/pkgs/applications/version-management/git/default.nix b/pkgs/applications/version-management/git/default.nix index d23df0c8062c5..41d8e8a8691d2 100644 --- a/pkgs/applications/version-management/git/default.nix +++ b/pkgs/applications/version-management/git/default.nix @@ -29,7 +29,7 @@ assert sendEmailSupport -> perlSupport; assert svnSupport -> perlSupport; let - version = "2.40.1"; + version = "2.41.0"; svn = subversionClient.override { perlBindings = perlSupport; }; gitwebPerlLibs = with perlPackages; [ CGI HTMLParser CGIFast FCGI FCGIProcManager HTMLTagCloud ]; in @@ -42,7 +42,7 @@ stdenv.mkDerivation (finalAttrs: { src = fetchurl { url = "https://www.kernel.org/pub/software/scm/git/git-${version}.tar.xz"; - hash = "sha256-SJO4uY7vyf3EsOfKJJ40AAT6p4BKQz0XQp4xHh/vIdI="; + hash = "sha256-50i6/UJM/oCyEsvG8bvMw6R9SGL7HreYiHd1BHhWgEA="; }; outputs = [ "out" ] ++ lib.optional withManual "doc"; diff --git a/pkgs/applications/version-management/gitlab/Remove-geo-from-database.yml.patch b/pkgs/applications/version-management/gitlab/Remove-unsupported-database-names.patch index 46d2c3171465a..7de1779f4a740 100644 --- a/pkgs/applications/version-management/gitlab/Remove-geo-from-database.yml.patch +++ b/pkgs/applications/version-management/gitlab/Remove-unsupported-database-names.patch @@ -1,20 +1,21 @@ -From 7d833508e3bc4c737834e9edf1c429d36f67a38c Mon Sep 17 00:00:00 2001 -From: "M. A" <mak@nyantec.com> -Date: Sat, 25 Jun 2022 13:34:42 +0000 -Subject: [PATCH] Remove geo from database.yml +From 310245bad66048624e199000a1c7eb9d68ce2b5c Mon Sep 17 00:00:00 2001 +From: Yaya <mak@nyantec.com> +Date: Tue, 23 May 2023 13:49:18 +0000 +Subject: [PATCH] Remove unsupported database names +The only supported ones are main, ci, main_clusterwide. --- - config/database.yml.postgresql | 28 ---------------------------- - 1 file changed, 28 deletions(-) + config/database.yml.postgresql | 35 ---------------------------------- + 1 file changed, 35 deletions(-) diff --git a/config/database.yml.postgresql b/config/database.yml.postgresql -index c1b1247b5b08..a81437d1e1b5 100644 +index b210b9c412bc..900612080416 100644 --- a/config/database.yml.postgresql +++ b/config/database.yml.postgresql @@ -26,13 +26,6 @@ production: - # username: git - # password: "secure password" - # host: localhost + username: git + password: "secure password" + host: localhost - geo: - adapter: postgresql - encoding: unicode @@ -26,9 +27,9 @@ index c1b1247b5b08..a81437d1e1b5 100644 # # Development specific @@ -57,13 +50,6 @@ development: - # host: localhost - # variables: - # statement_timeout: 15s + host: localhost + variables: + statement_timeout: 15s - geo: - adapter: postgresql - encoding: unicode @@ -40,9 +41,9 @@ index c1b1247b5b08..a81437d1e1b5 100644 # # Staging specific @@ -84,13 +70,6 @@ staging: - # username: git - # password: "secure password" - # host: localhost + username: git + password: "secure password" + host: localhost - geo: - adapter: postgresql - encoding: unicode @@ -53,10 +54,10 @@ index c1b1247b5b08..a81437d1e1b5 100644 # Warning: The database defined as "test" will be erased and # re-generated from your development database when you run "rake". -@@ -117,10 +96,3 @@ test: &test - # prepared_statements: false - # variables: - # statement_timeout: 15s +@@ -117,17 +96,3 @@ test: &test + prepared_statements: false + variables: + statement_timeout: 15s - geo: - adapter: postgresql - encoding: unicode @@ -64,6 +65,13 @@ index c1b1247b5b08..a81437d1e1b5 100644 - username: postgres - password: - host: localhost +- embedding: +- adapter: postgresql +- encoding: unicode +- database: gitlabhq_embedding_test +- username: postgres +- password: +- host: localhost -- -2.36.0 +2.38.4 diff --git a/pkgs/applications/version-management/gitlab/data.json b/pkgs/applications/version-management/gitlab/data.json index 038c87c64a34f..82996fe58857e 100644 --- a/pkgs/applications/version-management/gitlab/data.json +++ b/pkgs/applications/version-management/gitlab/data.json @@ -1,14 +1,14 @@ { - "version": "15.11.6", - "repo_hash": "sha256-qpYVYzxtMgWLXhMn+0TvDqRJOnerfc9OEU1Gs6Ys/Bc=", - "yarn_hash": "02ipm7agjy3c75df76c00k3qq5gpw3d876f6x91xnwizswsv9agb", + "version": "16.0.2", + "repo_hash": "sha256-qAwO/5eyyYdpwSUg3lC8jOFoBc8H6yhgiHUbx+Ww6Uc=", + "yarn_hash": "0yy04jnfvn5dgciqd105xiwg7chjwp3w6iqbjpylak9h82ci6wlh", "owner": "gitlab-org", "repo": "gitlab", - "rev": "v15.11.6-ee", + "rev": "v16.0.2-ee", "passthru": { - "GITALY_SERVER_VERSION": "15.11.6", - "GITLAB_PAGES_VERSION": "15.11.6", - "GITLAB_SHELL_VERSION": "14.18.0", - "GITLAB_WORKHORSE_VERSION": "15.11.6" + "GITALY_SERVER_VERSION": "16.0.2", + "GITLAB_PAGES_VERSION": "16.0.2", + "GITLAB_SHELL_VERSION": "14.20.0", + "GITLAB_WORKHORSE_VERSION": "16.0.2" } } diff --git a/pkgs/applications/version-management/gitlab/default.nix b/pkgs/applications/version-management/gitlab/default.nix index 105c2ce3e476e..64447b9d8457a 100644 --- a/pkgs/applications/version-management/gitlab/default.nix +++ b/pkgs/applications/version-management/gitlab/default.nix @@ -70,10 +70,10 @@ let ./remove-hardcoded-locations.patch # Gitlab edited the default database config since [1] and the - # installer complains about valid keywords only being "main" and "ci". + # installer now complains about valid keywords only being "main", "ci" and "embedded". # # [1]: https://gitlab.com/gitlab-org/gitlab/-/commit/99c0fac52b10cd9df62bbe785db799352a2d9028 - ./Remove-geo-from-database.yml.patch + ./Remove-unsupported-database-names.patch ]; # One of the patches uses this variable - if it's unset, execution # of rake tasks fails. diff --git a/pkgs/applications/version-management/gitlab/gitaly/Gemfile b/pkgs/applications/version-management/gitlab/gitaly/Gemfile deleted file mode 100644 index f247c46146a3d..0000000000000 --- a/pkgs/applications/version-management/gitlab/gitaly/Gemfile +++ /dev/null @@ -1,43 +0,0 @@ -source 'https://rubygems.org' - -gem 'rugged', '~> 1.5.1' -gem 'gitlab-markup', '~> 1.8.0' -gem 'activesupport', '~> 6.1.7.2' -gem 'grpc', '~> 1.42.0' # keep in lock-step with grpc-tools in ../tools/protogem -gem 'sentry-raven', '~> 3.1', require: false -gem 'rbtrace', require: false - -# The Gitaly Gem contains the Protobuf and gRPC definitions required by the -# Ruby sidecar. -gem 'gitaly', '~> 15.5.0' - -# Labkit provides observability functionality -gem 'gitlab-labkit', '~> 0.31', '>= 0.31.1' - -# Detects the open source license the repository includes -# This version needs to be in sync with GitLab CE/EE -gem 'licensee', '~> 9.15' - -gem 'google-protobuf', '~> 3.22.3' -gem 'nokogiri', '~> 1.14' - -# Rails is currently blocked on the upgrade to the new major version for Redis, -# so we don't upgrade either until the issue is resolved. This is an indirect -# dependency and can thus be removed when the version constraint is gone. -gem 'redis', '~> 4.8.0' - -group :development, :test do - gem 'rubocop', '~> 1.38', require: false - gem 'rspec', '~> 3.12.0', require: false - gem 'rspec-parameterized', require: false - gem 'factory_bot', require: false - gem 'pry', '~> 0.13.1', require: false -end - -# Gems required in omnibus-gitlab pipeline -group :development, :test, :omnibus do - # Using a fork until https://github.com/pivotal/LicenseFinder/pull/816 is - # resolved. For details, check discussion in - # https://gitlab.com/gitlab-org/gitlab/-/merge_requests/74881 - gem 'gitlab-license_finder', require: false -end diff --git a/pkgs/applications/version-management/gitlab/gitaly/Gemfile.lock b/pkgs/applications/version-management/gitlab/gitaly/Gemfile.lock deleted file mode 100644 index bd66bc20a83d8..0000000000000 --- a/pkgs/applications/version-management/gitlab/gitaly/Gemfile.lock +++ /dev/null @@ -1,207 +0,0 @@ -GEM - remote: https://rubygems.org/ - specs: - actionpack (6.1.7.2) - actionview (= 6.1.7.2) - activesupport (= 6.1.7.2) - rack (~> 2.0, >= 2.0.9) - rack-test (>= 0.6.3) - rails-dom-testing (~> 2.0) - rails-html-sanitizer (~> 1.0, >= 1.2.0) - actionview (6.1.7.2) - activesupport (= 6.1.7.2) - builder (~> 3.1) - erubi (~> 1.4) - rails-dom-testing (~> 2.0) - rails-html-sanitizer (~> 1.1, >= 1.2.0) - activesupport (6.1.7.2) - concurrent-ruby (~> 1.0, >= 1.0.2) - i18n (>= 1.6, < 2) - minitest (>= 5.1) - tzinfo (~> 2.0) - zeitwerk (~> 2.3) - addressable (2.8.0) - public_suffix (>= 2.0.2, < 5.0) - ast (2.4.2) - binding_of_caller (1.0.0) - debug_inspector (>= 0.0.1) - builder (3.2.4) - coderay (1.1.2) - concurrent-ruby (1.2.0) - crass (1.0.6) - debug_inspector (1.1.0) - diff-lcs (1.3) - dotenv (2.7.6) - erubi (1.12.0) - factory_bot (6.2.1) - activesupport (>= 5.0.0) - faraday (1.0.1) - multipart-post (>= 1.2, < 3) - ffi (1.15.5) - gitaly (15.5.0) - grpc (~> 1.0) - gitlab-labkit (0.31.1) - actionpack (>= 5.0.0, < 8.0.0) - activesupport (>= 5.0.0, < 8.0.0) - grpc (>= 1.37) - jaeger-client (~> 1.1.0) - opentracing (~> 0.4) - pg_query (~> 2.1) - redis (> 3.0.0, < 6.0.0) - gitlab-license_finder (6.14.2.1) - bundler - rubyzip (>= 1, < 3) - thor (~> 1.0) - tomlrb (>= 1.3, < 2.1) - with_env (= 1.1.0) - xml-simple (~> 1.1.5) - gitlab-markup (1.8.1) - google-protobuf (3.22.3) - googleapis-common-protos-types (1.4.0) - google-protobuf (~> 3.14) - grpc (1.42.0) - google-protobuf (~> 3.18) - googleapis-common-protos-types (~> 1.0) - i18n (1.12.0) - concurrent-ruby (~> 1.0) - jaeger-client (1.1.0) - opentracing (~> 0.3) - thrift - json (2.6.3) - licensee (9.15.2) - dotenv (~> 2.0) - octokit (~> 4.20) - reverse_markdown (~> 1.0) - rugged (>= 0.24, < 2.0) - thor (>= 0.19, < 2.0) - loofah (2.19.1) - crass (~> 1.0.2) - nokogiri (>= 1.5.9) - method_source (1.0.0) - mini_portile2 (2.8.1) - minitest (5.17.0) - msgpack (1.3.3) - multipart-post (2.1.1) - nokogiri (1.14.1) - mini_portile2 (~> 2.8.0) - racc (~> 1.4) - octokit (4.20.0) - faraday (>= 0.9) - sawyer (~> 0.8.0, >= 0.5.3) - opentracing (0.5.0) - optimist (3.0.1) - parallel (1.22.1) - parser (3.2.0.0) - ast (~> 2.4.1) - pg_query (2.2.1) - google-protobuf (>= 3.19.2) - proc_to_ast (0.1.0) - coderay - parser - unparser - pry (0.13.1) - coderay (~> 1.1) - method_source (~> 1.0) - public_suffix (4.0.7) - racc (1.6.2) - rack (2.2.6.3) - rack-test (2.0.2) - rack (>= 1.3) - rails-dom-testing (2.0.3) - activesupport (>= 4.2.0) - nokogiri (>= 1.6) - rails-html-sanitizer (1.5.0) - loofah (~> 2.19, >= 2.19.1) - rainbow (3.1.1) - rbtrace (0.4.14) - ffi (>= 1.0.6) - msgpack (>= 0.4.3) - optimist (>= 3.0.0) - redis (4.8.0) - regexp_parser (2.6.2) - reverse_markdown (1.4.0) - nokogiri - rexml (3.2.5) - rspec (3.12.0) - rspec-core (~> 3.12.0) - rspec-expectations (~> 3.12.0) - rspec-mocks (~> 3.12.0) - rspec-core (3.12.0) - rspec-support (~> 3.12.0) - rspec-expectations (3.12.2) - diff-lcs (>= 1.2.0, < 2.0) - rspec-support (~> 3.12.0) - rspec-mocks (3.12.3) - diff-lcs (>= 1.2.0, < 2.0) - rspec-support (~> 3.12.0) - rspec-parameterized (1.0.0) - rspec-parameterized-core (< 2) - rspec-parameterized-table_syntax (< 2) - rspec-parameterized-core (1.0.0) - parser - proc_to_ast - rspec (>= 2.13, < 4) - unparser - rspec-parameterized-table_syntax (1.0.0) - binding_of_caller - rspec-parameterized-core (< 2) - rspec-support (3.12.0) - rubocop (1.44.0) - json (~> 2.3) - parallel (~> 1.10) - parser (>= 3.2.0.0) - rainbow (>= 2.2.2, < 4.0) - regexp_parser (>= 1.8, < 3.0) - rexml (>= 3.2.5, < 4.0) - rubocop-ast (>= 1.24.1, < 2.0) - ruby-progressbar (~> 1.7) - unicode-display_width (>= 2.4.0, < 3.0) - rubocop-ast (1.24.1) - parser (>= 3.1.1.0) - ruby-progressbar (1.11.0) - rubyzip (2.3.2) - rugged (1.5.1) - sawyer (0.8.2) - addressable (>= 2.3.5) - faraday (> 0.8, < 2.0) - sentry-raven (3.1.2) - faraday (>= 1.0) - thor (1.1.0) - thrift (0.18.1) - tomlrb (2.0.1) - tzinfo (2.0.5) - concurrent-ruby (~> 1.0) - unicode-display_width (2.4.2) - unparser (0.6.7) - diff-lcs (~> 1.3) - parser (>= 3.2.0) - with_env (1.1.0) - xml-simple (1.1.9) - rexml - zeitwerk (2.6.6) - -PLATFORMS - ruby - -DEPENDENCIES - activesupport (~> 6.1.7.2) - factory_bot - gitaly (~> 15.5.0) - gitlab-labkit (~> 0.31, >= 0.31.1) - gitlab-license_finder - gitlab-markup (~> 1.8.0) - google-protobuf (~> 3.22.3) - grpc (~> 1.42.0) - licensee (~> 9.15) - nokogiri (~> 1.14) - pry (~> 0.13.1) - rbtrace - redis (~> 4.8.0) - rspec (~> 3.12.0) - rspec-parameterized - rubocop (~> 1.38) - rugged (~> 1.5.1) - sentry-raven (~> 3.1) - -BUNDLED WITH - 2.4.11 diff --git a/pkgs/applications/version-management/gitlab/gitaly/default.nix b/pkgs/applications/version-management/gitlab/gitaly/default.nix index 655604ee72c1f..e6dc566d4e10c 100644 --- a/pkgs/applications/version-management/gitlab/gitaly/default.nix +++ b/pkgs/applications/version-management/gitlab/gitaly/default.nix @@ -1,17 +1,19 @@ -{ lib, fetchFromGitLab, fetchFromGitHub, buildGoModule, ruby -, bundlerEnv, pkg-config +{ lib +, fetchFromGitLab +, fetchFromGitHub +, buildGoModule +, pkg-config + # libgit2 + dependencies -, libgit2, openssl, zlib, pcre, http-parser }: +, libgit2 +, http-parser +, openssl +, pcre +, zlib +}: let - rubyEnv = bundlerEnv rec { - name = "gitaly-env"; - inherit ruby; - copyGemFiles = true; - gemdir = ./.; - }; - - version = "15.11.6"; + version = "16.0.2"; package_version = "v${lib.versions.major version}"; gitaly_package = "gitlab.com/gitlab-org/gitaly/${package_version}"; @@ -22,17 +24,17 @@ let owner = "gitlab-org"; repo = "gitaly"; rev = "v${version}"; - sha256 = "sha256-n56Jqgu64+pN4bcH/Sh8/+4StpTEY529a4yVozqtK5Y="; + sha256 = "sha256-dtGtWV+lfTp9pKipAHx3FUIPaUobiRLsKYbULpuIgRY="; }; - vendorSha256 = "sha256-gJelagGPogeCdJtRpj4RaYlqzZRhtU0EIhmj1aK4ZOk="; + vendorSha256 = "sha256-KBhTI70eReZGSd7RxwGXcUGa0wDo7q5tU9fUhrLeFO0="; ldflags = [ "-X ${gitaly_package}/internal/version.version=${version}" "-X ${gitaly_package}/internal/version.moduleVersion=${version}" ]; tags = [ "static,system_libgit2" ]; nativeBuildInputs = [ pkg-config ]; - buildInputs = [ rubyEnv.wrappedRuby libgit2 openssl zlib pcre http-parser ]; + buildInputs = [ libgit2 openssl zlib pcre http-parser ]; doCheck = false; }; @@ -46,10 +48,6 @@ in buildGoModule ({ pname = "gitaly"; - passthru = { - inherit rubyEnv; - }; - subPackages = [ "cmd/gitaly" "cmd/gitaly-backup" ]; preConfigure = '' @@ -57,12 +55,7 @@ buildGoModule ({ cp -r ${auxBins}/bin/* _build/bin ''; - postInstall = '' - mkdir -p $ruby - cp -rv $src/ruby/{bin,lib} $ruby - ''; - - outputs = [ "out" "ruby" ]; + outputs = [ "out" ]; meta = with lib; { homepage = "https://gitlab.com/gitlab-org/gitaly"; diff --git a/pkgs/applications/version-management/gitlab/gitaly/gemset.nix b/pkgs/applications/version-management/gitlab/gitaly/gemset.nix deleted file mode 100644 index 7d37a3af1faa7..0000000000000 --- a/pkgs/applications/version-management/gitlab/gitaly/gemset.nix +++ /dev/null @@ -1,827 +0,0 @@ -{ - actionpack = { - dependencies = ["actionview" "activesupport" "rack" "rack-test" "rails-dom-testing" "rails-html-sanitizer"]; - groups = ["default"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "0c2y6sqpan68lrx78pvhbxb2917m75s808r6cg1kyygwvg31niza"; - type = "gem"; - }; - version = "6.1.7.2"; - }; - actionview = { - dependencies = ["activesupport" "builder" "erubi" "rails-dom-testing" "rails-html-sanitizer"]; - groups = ["default"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "10g5gk8h4mfhvgqylzbf591fqf5p78ca35cb97p9bclpv9jfy0za"; - type = "gem"; - }; - version = "6.1.7.2"; - }; - activesupport = { - dependencies = ["concurrent-ruby" "i18n" "minitest" "tzinfo" "zeitwerk"]; - groups = ["default" "development" "test"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "14pjq2k761qaywaznpqq8ziivjk2ks1ma2cjwdflkxqgndxjmsr2"; - type = "gem"; - }; - version = "6.1.7.2"; - }; - addressable = { - dependencies = ["public_suffix"]; - groups = ["default"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "022r3m9wdxljpbya69y2i3h9g3dhhfaqzidf95m6qjzms792jvgp"; - type = "gem"; - }; - version = "2.8.0"; - }; - ast = { - groups = ["default" "development" "test"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "04nc8x27hlzlrr5c2gn7mar4vdr0apw5xg22wp6m8dx3wqr04a0y"; - type = "gem"; - }; - version = "2.4.2"; - }; - binding_of_caller = { - dependencies = ["debug_inspector"]; - groups = ["default" "development" "test"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "078n2dkpgsivcf0pr50981w95nfc2bsrp3wpf9wnxz1qsp8jbb9s"; - type = "gem"; - }; - version = "1.0.0"; - }; - builder = { - groups = ["default"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "045wzckxpwcqzrjr353cxnyaxgf0qg22jh00dcx7z38cys5g1jlr"; - type = "gem"; - }; - version = "3.2.4"; - }; - coderay = { - source = { - remotes = ["https://rubygems.org"]; - sha256 = "15vav4bhcc2x3jmi3izb11l4d9f3xv8hp2fszb7iqmpsccv1pz4y"; - type = "gem"; - }; - version = "1.1.2"; - }; - concurrent-ruby = { - groups = ["default" "development" "test"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "1qnsflsbjj38im8xq35g0vihlz96h09wjn2dad5g543l3vvrkrx5"; - type = "gem"; - }; - version = "1.2.0"; - }; - crass = { - groups = ["default"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "0pfl5c0pyqaparxaqxi6s4gfl21bdldwiawrc0aknyvflli60lfw"; - type = "gem"; - }; - version = "1.0.6"; - }; - debug_inspector = { - groups = ["default" "development" "test"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "01l678ng12rby6660pmwagmyg8nccvjfgs3487xna7ay378a59ga"; - type = "gem"; - }; - version = "1.1.0"; - }; - diff-lcs = { - source = { - remotes = ["https://rubygems.org"]; - sha256 = "18w22bjz424gzafv6nzv98h0aqkwz3d9xhm7cbr1wfbyas8zayza"; - type = "gem"; - }; - version = "1.3"; - }; - dotenv = { - groups = ["default"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "0iym172c5337sm1x2ykc2i3f961vj3wdclbyg1x6sxs3irgfsl94"; - type = "gem"; - }; - version = "2.7.6"; - }; - erubi = { - groups = ["default"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "08s75vs9cxlc4r1q2bjg4br8g9wc5lc5x5vl0vv4zq5ivxsdpgi7"; - type = "gem"; - }; - version = "1.12.0"; - }; - factory_bot = { - dependencies = ["activesupport"]; - groups = ["development" "test"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "1pfk942d6qwhw151hxaz7n4knk6whyxqvvywdx2cdw9yhykyaqzq"; - type = "gem"; - }; - version = "6.2.1"; - }; - faraday = { - dependencies = ["multipart-post"]; - groups = ["default"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "0wwks9652xwgjm7yszcq5xr960pjypc07ivwzbjzpvy9zh2fw6iq"; - type = "gem"; - }; - version = "1.0.1"; - }; - ffi = { - groups = ["default"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "1862ydmclzy1a0cjbvm8dz7847d9rch495ib0zb64y84d3xd4bkg"; - type = "gem"; - }; - version = "1.15.5"; - }; - gitaly = { - dependencies = ["grpc"]; - groups = ["default"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "0hpgljz05rhik15z081ghxw9pw83vz78p12wjdgxj3qz1a4x8pfq"; - 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with_env = { - groups = ["default" "development" "omnibus" "test"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "1r5ns064mbb99hf1dyxsk9183hznc5i7mn3bi86zka6dlvqf9csh"; - type = "gem"; - }; - version = "1.1.0"; - }; - xml-simple = { - dependencies = ["rexml"]; - groups = ["default" "development" "omnibus" "test"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "0pb9plyl71mdbjr4kllfy53qx6g68ryxblmnq9dilvy837jk24fj"; - type = "gem"; - }; - version = "1.1.9"; - }; - zeitwerk = { - groups = ["default" "development" "test"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "09pqhdi6q4sqv0p1gnjpbcy4az0yv8hrpykjngdgh9qiqd87nfdv"; - type = "gem"; - }; - version = "2.6.6"; - }; -} diff --git a/pkgs/applications/version-management/gitlab/gitlab-pages/default.nix b/pkgs/applications/version-management/gitlab/gitlab-pages/default.nix index 2cb0aa2a82b64..3be7ff6f2ce2a 100644 --- a/pkgs/applications/version-management/gitlab/gitlab-pages/default.nix +++ b/pkgs/applications/version-management/gitlab/gitlab-pages/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "gitlab-pages"; - version = "15.11.6"; + version = "16.0.2"; src = fetchFromGitLab { owner = "gitlab-org"; repo = "gitlab-pages"; rev = "v${version}"; - sha256 = "sha256-Dl/NCsZCi5S9BKjtQzRg3mj8lzvIa4FMCqprLKXKlHw="; + sha256 = "sha256-AUX6JIkElYZHjy/RFBVXRb3ZnbWkaNyApZNMT6zsBAU="; }; vendorHash = "sha256-s3HHoz9URACuVVhePQQFviTqlQU7vCLOjTJPBlus1Vo="; diff --git a/pkgs/applications/version-management/gitlab/gitlab-shell/default.nix b/pkgs/applications/version-management/gitlab/gitlab-shell/default.nix index d2d8a372e5c38..5dcb6e88a15cb 100644 --- a/pkgs/applications/version-management/gitlab/gitlab-shell/default.nix +++ b/pkgs/applications/version-management/gitlab/gitlab-shell/default.nix @@ -2,19 +2,19 @@ buildGoModule rec { pname = "gitlab-shell"; - version = "14.18.0"; + version = "14.20.0"; src = fetchFromGitLab { owner = "gitlab-org"; repo = "gitlab-shell"; rev = "v${version}"; - sha256 = "sha256-dMxWnv+YfoDy9rhuCx+JIxFyjHejttkkqkQ4owdI/4g="; + sha256 = "sha256-5rjrBt0AihSHMYOD6JbXGvvFaUbtYnMHX2Z4K+Svno0="; }; buildInputs = [ ruby libkrb5 ]; patches = [ ./remove-hardcoded-locations.patch ]; - vendorSha256 = "sha256-zqZMZvYteOWTgDnlX8H1i8e/QTbAoTPD6ZNsHsCcLdM="; + vendorSha256 = "sha256-kKbTbOCuAGIbnFXTOZyoVRM5PIackbmND6PrryVvLTM="; postInstall = '' cp -r "$NIX_BUILD_TOP/source"/bin/* $out/bin diff --git a/pkgs/applications/version-management/gitlab/gitlab-workhorse/default.nix b/pkgs/applications/version-management/gitlab/gitlab-workhorse/default.nix index 96362c4895901..b79b88137ddbd 100644 --- a/pkgs/applications/version-management/gitlab/gitlab-workhorse/default.nix +++ b/pkgs/applications/version-management/gitlab/gitlab-workhorse/default.nix @@ -5,7 +5,7 @@ in buildGoModule rec { pname = "gitlab-workhorse"; - version = "15.11.6"; + version = "16.0.2"; src = fetchFromGitLab { owner = data.owner; @@ -16,7 +16,7 @@ buildGoModule rec { sourceRoot = "source/workhorse"; - vendorSha256 = "sha256-/snYfip1f0TCVoPk80thanYpbYsGjEd+CAcxIt289As="; + vendorSha256 = "sha256-B9YZkqAMYvTnnWx2tYEF0VZ/+9LZaWS5euQ9ZX2m49E="; buildInputs = [ git ]; ldflags = [ "-X main.Version=${version}" ]; doCheck = false; diff --git a/pkgs/applications/version-management/gitlab/remove-hardcoded-locations.patch b/pkgs/applications/version-management/gitlab/remove-hardcoded-locations.patch index 2b5053074052d..e7d704237aeda 100644 --- a/pkgs/applications/version-management/gitlab/remove-hardcoded-locations.patch +++ b/pkgs/applications/version-management/gitlab/remove-hardcoded-locations.patch @@ -31,10 +31,10 @@ index da1a15302da..c846db93e5c 100644 ## Webpack settings # If enabled, this will tell rails to serve frontend assets from the webpack-dev-server running diff --git a/config/initializers/1_settings.rb b/config/initializers/1_settings.rb -index 99335321f28..9d9d1c48af4 100644 +index d096174fca3a..02d0f689c523 100644 --- a/config/initializers/1_settings.rb +++ b/config/initializers/1_settings.rb -@@ -185,7 +185,7 @@ +@@ -206,7 +206,7 @@ Settings.gitlab['user_home'] ||= begin Etc.getpwnam(Settings.gitlab['user']).dir rescue ArgumentError # no user configured @@ -43,13 +43,13 @@ index 99335321f28..9d9d1c48af4 100644 end Settings.gitlab['time_zone'] ||= nil Settings.gitlab['signup_enabled'] ||= true if Settings.gitlab['signup_enabled'].nil? -@@ -794,7 +794,7 @@ +@@ -959,7 +959,7 @@ # Git # - Settings['git'] ||= Settingslogic.new({}) + Settings['git'] ||= {} -Settings.git['bin_path'] ||= '/usr/bin/git' +Settings.git['bin_path'] ||= 'git' - + # Important: keep the satellites.path setting until GitLab 9.0 at # least. This setting is fed to 'rm -rf' in diff --git a/config/puma.rb.example b/config/puma.rb.example diff --git a/pkgs/applications/version-management/gitlab/rubyEnv/Gemfile b/pkgs/applications/version-management/gitlab/rubyEnv/Gemfile index b0826a2482e59..10c4d6dc8d869 100644 --- a/pkgs/applications/version-management/gitlab/rubyEnv/Gemfile +++ b/pkgs/applications/version-management/gitlab/rubyEnv/Gemfile @@ -2,7 +2,7 @@ source 'https://rubygems.org' -if ENV['BUNDLER_CHECKSUM_VERIFICATION_OPT_IN'] # this verification is still experimental +if ENV.fetch('BUNDLER_CHECKSUM_VERIFICATION_OPT_IN', 'false') != 'false' # this verification is still experimental $LOAD_PATH.unshift(File.expand_path("vendor/gems/bundler-checksum/lib", __dir__)) require 'bundler-checksum' BundlerChecksum.patch! @@ -17,9 +17,7 @@ gem 'rails', '~> 6.1.7.2' gem 'bootsnap', '~> 1.16.0', require: false -# Pin openssl to match the version bundled with our supported Rubies. -# See https://stdgems.org/openssl/#gem-version. -gem 'openssl', '3.0.2' +gem 'openssl', '~> 3.0' gem 'ipaddr', '~> 1.2.5' # Responders respond_to and respond_with @@ -27,10 +25,12 @@ gem 'responders', '~> 3.0' gem 'sprockets', '~> 3.7.0' -gem 'view_component', '~> 2.74.1' +gem 'view_component', '~> 2.82.0' # Supported DBs -gem 'pg', '~> 1.4.6' +gem 'pg', '~> 1.5.3' + +gem 'neighbor', '~> 0.2.3' gem 'rugged', '~> 1.5' gem 'grape-path-helpers', '~> 1.7.1' @@ -46,14 +46,13 @@ gem 'devise', '~> 4.8.1' gem 'devise-pbkdf2-encryptable', '~> 0.0.0', path: 'vendor/gems/devise-pbkdf2-encryptable' gem 'bcrypt', '~> 3.1', '>= 3.1.14' gem 'doorkeeper', '~> 5.6', '>= 5.6.6' -gem 'doorkeeper-openid_connect', '~> 1.8', '>= 1.8.5' +gem 'doorkeeper-openid_connect', '~> 1.8', '>= 1.8.6' gem 'rexml', '~> 3.2.5' gem 'ruby-saml', '~> 1.13.0' gem 'omniauth', '~> 2.1.0' gem 'omniauth-auth0', '~> 3.1' gem 'omniauth-azure-activedirectory-v2', '~> 2.0' gem 'omniauth-azure-oauth2', '~> 0.0.9', path: 'vendor/gems/omniauth-azure-oauth2' # See gem README.md -gem 'omniauth-cas3', '~> 1.1.4', path: 'vendor/gems/omniauth-cas3' # See vendor/gems/omniauth-cas3/README.md gem 'omniauth-dingtalk-oauth2', '~> 1.0' gem 'omniauth-alicloud', '~> 2.0.1' gem 'omniauth-facebook', '~> 4.0.0' @@ -61,7 +60,7 @@ gem 'omniauth-github', '2.0.1' gem 'omniauth-gitlab', '~> 4.0.0', path: 'vendor/gems/omniauth-gitlab' # See vendor/gems/omniauth-gitlab/README.md gem 'omniauth-google-oauth2', '~> 1.1' gem 'omniauth-oauth2-generic', '~> 0.2.2' -gem 'omniauth-saml', '~> 2.0.0' +gem 'omniauth-saml', '~> 2.1.0' gem 'omniauth-twitter', '~> 1.4' gem 'omniauth_crowd', '~> 2.4.0', path: 'vendor/gems/omniauth_crowd' # See vendor/gems/omniauth_crowd/README.md gem 'omniauth_openid_connect', '~> 0.6.1' @@ -86,7 +85,6 @@ gem 'invisible_captcha', '~> 2.0.0' gem 'devise-two-factor', '~> 4.0.2' gem 'rqrcode-rails3', '~> 0.1.7' gem 'attr_encrypted', '~> 3.2.4', path: 'vendor/gems/attr_encrypted' -gem 'u2f', '~> 0.2.1' # GitLab Pages gem 'validates_hostname', '~> 1.0.11' @@ -174,9 +172,9 @@ gem 'seed-fu', '~> 2.3.7' gem 'elasticsearch-model', '~> 7.2' gem 'elasticsearch-rails', '~> 7.2', require: 'elasticsearch/rails/instrumentation' gem 'elasticsearch-api', '7.13.3' -gem 'aws-sdk-core', '~> 3.171.0' +gem 'aws-sdk-core', '~> 3.172.0' gem 'aws-sdk-cloudformation', '~> 1' -gem 'aws-sdk-s3', '~> 1.121.0' +gem 'aws-sdk-s3', '~> 1.122.0' gem 'faraday_middleware-aws-sigv4', '~>0.3.0' gem 'typhoeus', '~> 1.4.0' # Used with Elasticsearch to support http keep-alive connections @@ -207,7 +205,7 @@ gem 'diffy', '~> 3.4' gem 'diff_match_patch', '~> 0.1.0' # Application server -gem 'rack', '~> 2.2.6', '>= 2.2.6.4' +gem 'rack', '~> 2.2.7' # https://github.com/zombocom/rack-timeout/blob/master/README.md#rails-apps-manually gem 'rack-timeout', '~> 0.6.3', require: 'rack/timeout/base' @@ -241,9 +239,6 @@ gem 'rainbow', '~> 3.0' # Progress bar gem 'ruby-progressbar', '~> 1.10' -# GitLab settings -gem 'settingslogic', '~> 2.0.9' - # Linear-time regex library for untrusted regular expressions gem 're2', '~> 1.6.0' @@ -289,13 +284,14 @@ gem 'kubeclient', '~> 4.11.0' # AI gem 'ruby-openai', '~> 3.7' +gem 'circuitbox', '2.0.0' # Sanitize user input gem 'sanitize', '~> 6.0' gem 'babosa', '~> 1.0.4' # Sanitizes SVG input -gem 'loofah', '~> 2.20.0' +gem 'loofah', '~> 2.21.0' # Working with license # Detects the open source license the repository includes @@ -344,7 +340,7 @@ gem 'pg_query', '~> 2.2', '>= 2.2.1' gem 'premailer-rails', '~> 1.10.3' -gem 'gitlab-labkit', '~> 0.31.1' +gem 'gitlab-labkit', '~> 0.32.0' gem 'thrift', '>= 0.16.0' # I18n @@ -367,20 +363,20 @@ gem 'snowplow-tracker', '~> 0.8.0' # Metrics gem 'webrick', '~> 1.8.1', require: false -gem 'prometheus-client-mmap', '~> 0.19', require: 'prometheus/client' +gem 'prometheus-client-mmap', '~> 0.23', require: 'prometheus/client' gem 'warning', '~> 1.3.0' group :development do - gem 'lefthook', '~> 1.3.10', require: false + gem 'lefthook', '~> 1.3.13', require: false gem 'rubocop' gem 'solargraph', '~> 0.47.2', require: false gem 'letter_opener_web', '~> 2.0.0' - gem 'lookbook', '~> 1.5', '>= 1.5.3' + gem 'lookbook', '~> 2.0', '>= 2.0.1' # Better errors handler - gem 'better_errors', '~> 2.9.1' + gem 'better_errors', '~> 2.10.0' gem 'sprite-factory', '~> 1.7' @@ -435,7 +431,7 @@ group :development, :test do end group :development, :test, :danger do - gem 'gitlab-dangerfiles', '~> 3.9.0', require: false + gem 'gitlab-dangerfiles', '~> 3.10.0', require: false end group :development, :test, :coverage do @@ -459,7 +455,8 @@ group :test do gem 'capybara', '~> 3.39' gem 'capybara-screenshot', '~> 1.0.26' - gem 'selenium-webdriver', '~> 3.142', '>= 3.142.7' + # 4.9.1 drops Ruby 2.7 support. We can upgrade further after we drop Ruby 2.7 support. + gem 'selenium-webdriver', '= 4.9.0' gem 'graphlyte', '~> 1.0.0' @@ -484,7 +481,7 @@ gem 'gitlab-mail_room', '~> 0.0.23', require: 'mail_room' gem 'email_reply_trimmer', '~> 0.1' gem 'html2text' -gem 'stackprof', '~> 0.2.23', require: false +gem 'stackprof', '~> 0.2.25', require: false gem 'rbtrace', '~> 0.4', require: false gem 'memory_profiler', '~> 1.0', require: false gem 'activerecord-explain-analyze', '~> 0.1', require: false @@ -512,7 +509,7 @@ gem 'spamcheck', '~> 1.3.0' gem 'gitaly', '~> 15.9.0-rc3' # KAS GRPC protocol definitions -gem 'kas-grpc', '~> 0.0.2' +gem 'kas-grpc', '~> 0.1.0' gem 'grpc', '~> 1.42.0' @@ -589,6 +586,9 @@ gem 'cvss-suite', '~> 3.0.1', require: 'cvss_suite' # Work with RPM packages gem 'arr-pm', '~> 0.0.12' +# Remote Development +gem 'devfile', '~> 0.0.17.pre.alpha1' + # Apple plist parsing gem 'CFPropertyList', '~> 3.0.0' gem 'app_store_connect' diff --git a/pkgs/applications/version-management/gitlab/rubyEnv/Gemfile.lock b/pkgs/applications/version-management/gitlab/rubyEnv/Gemfile.lock index 0b14f9032d1f9..199c806a854c9 100644 --- a/pkgs/applications/version-management/gitlab/rubyEnv/Gemfile.lock +++ b/pkgs/applications/version-management/gitlab/rubyEnv/Gemfile.lock @@ -62,14 +62,6 @@ PATH omniauth-oauth2 (~> 1.4) PATH - remote: vendor/gems/omniauth-cas3 - specs: - omniauth-cas3 (1.1.4) - addressable (~> 2.3) - nokogiri (~> 1.7, >= 1.7.1) - omniauth (~> 2.0) - -PATH remote: vendor/gems/omniauth-gitlab specs: omniauth-gitlab (4.0.0) @@ -207,19 +199,19 @@ GEM awesome_print (1.9.2) awrence (1.2.1) aws-eventstream (1.2.0) - aws-partitions (1.733.0) + aws-partitions (1.761.0) aws-sdk-cloudformation (1.41.0) aws-sdk-core (~> 3, >= 3.99.0) aws-sigv4 (~> 1.1) - aws-sdk-core (3.171.0) + aws-sdk-core (3.172.0) aws-eventstream (~> 1, >= 1.0.2) aws-partitions (~> 1, >= 1.651.0) aws-sigv4 (~> 1.5) jmespath (~> 1, >= 1.6.1) - aws-sdk-kms (1.63.0) + aws-sdk-kms (1.64.0) aws-sdk-core (~> 3, >= 3.165.0) aws-sigv4 (~> 1.1) - aws-sdk-s3 (1.121.0) + aws-sdk-s3 (1.122.0) aws-sdk-core (~> 3, >= 3.165.0) aws-sdk-kms (~> 1) aws-sigv4 (~> 1.4) @@ -256,10 +248,10 @@ GEM memory_profiler (~> 1) benchmark-perf (0.6.0) benchmark-trend (0.4.0) - better_errors (2.9.1) - coderay (>= 1.0.0) + better_errors (2.10.0) erubi (>= 1.0.0) rack (>= 0.9.0) + rouge (>= 1.0.0) bindata (2.4.11) binding_of_caller (1.0.0) debug_inspector (>= 0.0.1) @@ -303,8 +295,8 @@ GEM mixlib-shellout (>= 2.0, < 4.0) tomlrb (~> 1.2) chef-utils (16.10.17) - childprocess (3.0.0) chunky_png (1.3.5) + circuitbox (2.0.0) citrus (3.0.2) claide (1.1.0) claide-plugins (0.9.2) @@ -375,6 +367,7 @@ GEM thor (>= 0.19, < 2) descendants_tracker (0.0.4) thread_safe (~> 0.3, >= 0.3.1) + devfile (0.0.17.pre.alpha1) device_detector (1.0.0) devise (4.8.1) bcrypt (~> 3.0) @@ -400,7 +393,7 @@ GEM unf (>= 0.0.5, < 1.0.0) doorkeeper (5.6.6) railties (>= 5) - doorkeeper-openid_connect (1.8.5) + doorkeeper-openid_connect (1.8.6) doorkeeper (>= 5.5, < 5.7) jwt (>= 2.5) dotenv (2.7.6) @@ -595,7 +588,7 @@ GEM terminal-table (>= 1.5.1) gitlab-chronic (0.10.5) numerizer (~> 0.2) - gitlab-dangerfiles (3.9.0) + gitlab-dangerfiles (3.10.0) danger (>= 8.4.5) danger-gitlab (>= 8.0.0) rake @@ -609,7 +602,7 @@ GEM fog-json (~> 1.2.0) mime-types ms_rest_azure (~> 0.12.0) - gitlab-labkit (0.31.1) + gitlab-labkit (0.32.0) actionpack (>= 5.0.0, < 8.0.0) activesupport (>= 5.0.0, < 8.0.0) grpc (>= 1.37) @@ -617,7 +610,7 @@ GEM opentracing (~> 0.4) pg_query (~> 2.1) redis (> 3.0.0, < 6.0.0) - gitlab-license (2.2.1) + gitlab-license (2.2.2) gitlab-mail_room (0.0.23) jwt (>= 2.0) net-imap (>= 0.2.1) @@ -870,7 +863,7 @@ GEM activerecord kaminari-core (= 1.2.2) kaminari-core (1.2.2) - kas-grpc (0.0.2) + kas-grpc (0.1.0) grpc (~> 1.0) knapsack (1.21.1) rake @@ -885,7 +878,7 @@ GEM rest-client (~> 2.0) launchy (2.5.0) addressable (~> 2.7) - lefthook (1.3.10) + lefthook (1.3.13) letter_opener (1.7.0) launchy (~> 2.2) letter_opener_web (2.0.0) @@ -920,20 +913,19 @@ GEM activesupport (>= 4) railties (>= 4) request_store (~> 1.0) - loofah (2.20.0) + loofah (2.21.0) crass (~> 1.0.2) nokogiri (>= 1.5.9) - lookbook (1.5.3) - actioncable + lookbook (2.0.1) activemodel css_parser htmlbeautifier (~> 1.3) htmlentities (~> 4.3.4) - listen (~> 3.0) + marcel (~> 1.0) railties (>= 5.0) redcarpet (~> 3.5) rouge (>= 3.26, < 5.0) - view_component (> 2.0, < 4) + view_component (>= 2.0) yard (~> 0.9.25) zeitwerk (~> 2.5) lru_redux (1.1.0) @@ -984,6 +976,8 @@ GEM mustermann-grape (1.0.1) mustermann (>= 1.0.0) nap (1.1.0) + neighbor (0.2.3) + activerecord (>= 5.2) nenv (0.3.0) net-http-persistent (4.0.1) connection_pool (~> 2.2) @@ -1073,9 +1067,9 @@ GEM omniauth-oauth2-generic (0.2.8) omniauth-oauth2 (~> 1.0) rake - omniauth-saml (2.0.0) + omniauth-saml (2.1.0) omniauth (~> 2.0) - ruby-saml (~> 1.9) + ruby-saml (~> 1.12) omniauth-twitter (1.4.0) omniauth-oauth (~> 1.1) rack @@ -1093,7 +1087,7 @@ GEM validate_email validate_url webfinger (>= 1.0.1) - openssl (3.0.2) + openssl (3.1.0) openssl-signature_algorithm (1.3.0) openssl (> 2.0) opentracing (0.5.0) @@ -1133,7 +1127,7 @@ GEM tty-color (~> 0.5) peek (1.1.0) railties (>= 4.0.0) - pg (1.4.6) + pg (1.5.3) pg_query (2.2.1) google-protobuf (>= 3.19.2) plist (3.6.0) @@ -1151,7 +1145,8 @@ GEM coderay parser unparser - prometheus-client-mmap (0.19.1) + prometheus-client-mmap (0.23.1) + rb_sys (~> 0.9) pry (0.14.2) coderay (~> 1.1) method_source (~> 1.0) @@ -1173,7 +1168,7 @@ GEM pyu-ruby-sasl (0.0.3.3) raabro (1.4.0) racc (1.6.2) - rack (2.2.6.4) + rack (2.2.7) rack-accept (0.4.5) rack (>= 0.4) rack-attack (6.6.1) @@ -1231,6 +1226,7 @@ GEM rb-fsevent (0.11.2) rb-inotify (0.10.1) ffi (~> 1.0) + rb_sys (0.9.75) rbtrace (0.4.14) ffi (>= 1.0.6) msgpack (>= 0.4.3) @@ -1399,9 +1395,10 @@ GEM seed-fu (2.3.7) activerecord (>= 3.1) activesupport (>= 3.1) - selenium-webdriver (3.142.7) - childprocess (>= 0.5, < 4.0) - rubyzip (>= 1.2.2) + selenium-webdriver (4.9.0) + rexml (~> 3.2, >= 3.2.5) + rubyzip (>= 1.2.2, < 3.0) + websocket (~> 1.0) semver_dialects (1.2.1) pastel (~> 0.8.0) thor (~> 1.2.0) @@ -1417,7 +1414,6 @@ GEM sentry-ruby (~> 5.8.0) sidekiq (>= 3.0) set (1.0.1) - settingslogic (2.0.9) sexp_processor (4.16.1) shellany (0.0.1) shoulda-matchers (5.1.0) @@ -1486,7 +1482,7 @@ GEM mini_portile2 (~> 2.8.0) ssh_data (1.3.0) ssrf_filter (1.0.8) - stackprof (0.2.23) + stackprof (0.2.25) state_machines (0.5.0) state_machines-activemodel (0.8.0) activemodel (>= 5.1) @@ -1573,7 +1569,6 @@ GEM ethon (>= 0.9.0) tzinfo (2.0.6) concurrent-ruby (~> 1.0) - u2f (0.2.1) uber (0.1.0) undercover (0.4.5) imagen (>= 0.1.8) @@ -1605,8 +1600,8 @@ GEM activesupport (>= 3.0) version_gem (1.1.0) version_sorter (2.3.0) - view_component (2.74.1) - activesupport (>= 5.0.0, < 8.0) + view_component (2.82.0) + activesupport (>= 5.2.0, < 8.0) concurrent-ruby (~> 1.0) method_source (~> 1.0) virtus (2.0.0) @@ -1634,6 +1629,7 @@ GEM crack (>= 0.3.2) hashdiff (>= 0.4.0, < 2.0.0) webrick (1.8.1) + websocket (1.2.9) websocket-driver (0.7.5) websocket-extensions (>= 0.1.0) websocket-extensions (0.1.5) @@ -1676,8 +1672,8 @@ DEPENDENCIES autoprefixer-rails (= 10.2.5.1) awesome_print aws-sdk-cloudformation (~> 1) - aws-sdk-core (~> 3.171.0) - aws-sdk-s3 (~> 1.121.0) + aws-sdk-core (~> 3.172.0) + aws-sdk-s3 (~> 1.122.0) axe-core-rspec babosa (~> 1.0.4) base32 (~> 0.3.0) @@ -1685,7 +1681,7 @@ DEPENDENCIES bcrypt (~> 3.1, >= 3.1.14) benchmark-ips (~> 2.11.0) benchmark-memory (~> 0.1) - better_errors (~> 2.9.1) + better_errors (~> 2.10.0) bootsnap (~> 1.16.0) browser (~> 5.3.1) bullet (~> 7.0.2) @@ -1695,6 +1691,7 @@ DEPENDENCIES capybara-screenshot (~> 1.0.26) carrierwave (~> 1.3) charlock_holmes (~> 0.7.7) + circuitbox (= 2.0.0) cloud_profiler_agent (~> 0.0.0)! commonmarker (~> 0.23.6) concurrent-ruby (~> 1.1) @@ -1708,6 +1705,7 @@ DEPENDENCIES declarative_policy (~> 1.1.0) deprecation_toolkit (~> 1.5.1) derailed_benchmarks + devfile (~> 0.0.17.pre.alpha1) device_detector devise (~> 4.8.1) devise-pbkdf2-encryptable (~> 0.0.0)! @@ -1716,7 +1714,7 @@ DEPENDENCIES diffy (~> 3.4) discordrb-webhooks (~> 3.4) doorkeeper (~> 5.6, >= 5.6.6) - doorkeeper-openid_connect (~> 1.8, >= 1.8.5) + doorkeeper-openid_connect (~> 1.8, >= 1.8.6) duo_api (~> 1.3) ed25519 (~> 1.3.0) elasticsearch-api (= 7.13.3) @@ -1745,10 +1743,10 @@ DEPENDENCIES gettext_i18n_rails_js (~> 1.3) gitaly (~> 15.9.0.pre.rc3) gitlab-chronic (~> 0.10.5) - gitlab-dangerfiles (~> 3.9.0) + gitlab-dangerfiles (~> 3.10.0) gitlab-experiment (~> 0.7.1) gitlab-fog-azure-rm (~> 1.7.0) - gitlab-labkit (~> 0.31.1) + gitlab-labkit (~> 0.32.0) gitlab-license (~> 2.2.1) gitlab-mail_room (~> 0.0.23) gitlab-markup (~> 1.9.0) @@ -1804,19 +1802,19 @@ DEPENDENCIES json_schemer (~> 0.2.18) jwt (~> 2.5) kaminari (~> 1.2.2) - kas-grpc (~> 0.0.2) + kas-grpc (~> 0.1.0) knapsack (~> 1.21.1) kramdown (~> 2.3.1) kubeclient (~> 4.11.0) - lefthook (~> 1.3.10) + lefthook (~> 1.3.13) letter_opener_web (~> 2.0.0) license_finder (~> 7.0) licensee (~> 9.15) listen (~> 3.7) lockbox (~> 1.1.1) lograge (~> 0.5) - loofah (~> 2.20.0) - lookbook (~> 1.5, >= 1.5.3) + loofah (~> 2.21.0) + lookbook (~> 2.0, >= 2.0.1) lru_redux mail (= 2.8.1) mail-smtp_pool (~> 0.1.0)! @@ -1826,6 +1824,7 @@ DEPENDENCIES mini_magick (~> 4.10.1) minitest (~> 5.11.0) multi_json (~> 1.14.1) + neighbor (~> 0.2.3) net-ldap (~> 0.17.1) net-ntp net-protocol (~> 0.1.3) @@ -1841,7 +1840,6 @@ DEPENDENCIES omniauth-auth0 (~> 3.1) omniauth-azure-activedirectory-v2 (~> 2.0) omniauth-azure-oauth2 (~> 0.0.9)! - omniauth-cas3 (~> 1.1.4)! omniauth-dingtalk-oauth2 (~> 1.0) omniauth-facebook (~> 4.0.0) omniauth-github (= 2.0.1) @@ -1849,28 +1847,28 @@ DEPENDENCIES omniauth-google-oauth2 (~> 1.1) omniauth-oauth2-generic (~> 0.2.2) omniauth-salesforce (~> 1.0.5)! - omniauth-saml (~> 2.0.0) + omniauth-saml (~> 2.1.0) omniauth-twitter (~> 1.4) omniauth_crowd (~> 2.4.0)! omniauth_openid_connect (~> 0.6.1) openid_connect (= 1.3.0) - openssl (= 3.0.2) + openssl (~> 3.0) org-ruby (~> 0.9.12) pact (~> 1.63) parallel (~> 1.19) parslet (~> 1.8) peek (~> 1.1) - pg (~> 1.4.6) + pg (~> 1.5.3) pg_query (~> 2.2, >= 2.2.1) png_quantizator (~> 0.2.1) premailer-rails (~> 1.10.3) - prometheus-client-mmap (~> 0.19) + prometheus-client-mmap (~> 0.23) pry-byebug pry-rails (~> 0.3.9) pry-shell (~> 0.6.1) puma (~> 5.6.5) puma_worker_killer (~> 0.3.1) - rack (~> 2.2.6, >= 2.2.6.4) + rack (~> 2.2.7) rack-attack (~> 6.6.1) rack-cors (~> 1.1.1) rack-oauth2 (~> 1.21.3) @@ -1912,13 +1910,12 @@ DEPENDENCIES sassc-rails (~> 2.1.0) sd_notify (~> 0.1.0) seed-fu (~> 2.3.7) - selenium-webdriver (~> 3.142, >= 3.142.7) + selenium-webdriver (= 4.9.0) semver_dialects (~> 1.2.1) sentry-rails (~> 5.8.0) sentry-raven (~> 3.1) sentry-ruby (~> 5.8.0) sentry-sidekiq (~> 5.8.0) - settingslogic (~> 2.0.9) shoulda-matchers (~> 5.1.0) sidekiq (~> 6.5.7) sidekiq-cron (~> 1.8.0) @@ -1936,7 +1933,7 @@ DEPENDENCIES sprite-factory (~> 1.7) sprockets (~> 3.7.0) ssh_data (~> 1.3) - stackprof (~> 0.2.23) + stackprof (~> 0.2.25) state_machines-activerecord (~> 0.8.0) sys-filesystem (~> 1.4.3) tanuki_emoji (~> 0.6) @@ -1949,14 +1946,13 @@ DEPENDENCIES toml-rb (~> 2.2.0) truncato (~> 0.7.12) typhoeus (~> 1.4.0) - u2f (~> 0.2.1) undercover (~> 0.4.4) unf (~> 0.1.4) unleash (~> 3.2.2) valid_email (~> 0.1) validates_hostname (~> 1.0.11) version_sorter (~> 2.3) - view_component (~> 2.74.1) + view_component (~> 2.82.0) vmstat (~> 2.3.0) warning (~> 1.3.0) webauthn (~> 3.0) diff --git a/pkgs/applications/version-management/gitlab/rubyEnv/gemset.nix b/pkgs/applications/version-management/gitlab/rubyEnv/gemset.nix index 237c9ab5a53d7..ac66421c70941 100644 --- a/pkgs/applications/version-management/gitlab/rubyEnv/gemset.nix +++ b/pkgs/applications/version-management/gitlab/rubyEnv/gemset.nix @@ -379,10 +379,10 @@ src: platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0lmva6m4jjc1vl4mb45ar6jhwzbaw5mb80yc6s2wi729ijlqqhad"; + sha256 = "1whf6ppvdibfpsr660ajncig3hyc6q9dvnx645ajrjfz3r7487i9"; type = "gem"; }; - version = "1.733.0"; + version = "1.761.0"; }; aws-sdk-cloudformation = { dependencies = ["aws-sdk-core" "aws-sigv4"]; @@ -401,10 +401,10 @@ src: platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0732vv8zi67z25fss1sdvqx0vv1ap3w6hz1avxzwznkjp002vj39"; + sha256 = "06scfn1qjfqvgr05ddrcbihlnfi7bffk8r0m5z536w4mm1s3gh6x"; type = "gem"; }; - version = "3.171.0"; + version = "3.172.0"; }; aws-sdk-kms = { dependencies = ["aws-sdk-core" "aws-sigv4"]; @@ -412,10 +412,10 @@ src: platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0v87zi28dfmrv7bv91yfldccnpd63n295siirbz7wqv1rajn8n02"; + sha256 = "1bcm0c9f7xy5qj5f0z3gddqslhb2vzrj9smc39pgqyq4jmn5kpj0"; type = "gem"; }; - version = "1.63.0"; + version = "1.64.0"; }; aws-sdk-s3 = { dependencies = ["aws-sdk-core" "aws-sdk-kms" "aws-sigv4"]; @@ -423,10 +423,10 @@ src: platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1s5v3799pi7ik53gv7dl02am5pngv6x4azzwx9my09nll4q3lfk8"; + sha256 = "01cryf8kfkmlsxb327szcwcagsp7lss5gmk6zxlgap65lv8bc7rx"; type = "gem"; }; - version = "1.121.0"; + version = "1.122.0"; }; aws-sigv4 = { dependencies = ["aws-eventstream"]; @@ -606,15 +606,15 @@ src: version = "0.4.0"; }; better_errors = { - dependencies = ["coderay" "erubi" "rack"]; + dependencies = ["erubi" "rack" "rouge"]; groups = ["development"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "11220lfzhsyf5fcril3qd689kgg46qlpiiaj00hc9mh4mcbc3vrr"; + sha256 = "0fhi891k7c4l967bacahq2jhnxswfmbpmbsg1yapczwpm1ynmaz3"; type = "gem"; }; - version = "2.9.1"; + version = "2.10.0"; }; bindata = { groups = ["default"]; @@ -810,25 +810,25 @@ src: }; version = "16.10.17"; }; - childprocess = { - groups = ["default" "test"]; + chunky_png = { + groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1ic028k8xgm2dds9mqnvwwx3ibaz32j8455zxr9f4bcnviyahya5"; + sha256 = "0vf0axgrm95bs3y0x5gdb76xawfh210yxplj7jbwr6z7n88i1axn"; type = "gem"; }; - version = "3.0.0"; + version = "1.3.5"; }; - chunky_png = { + circuitbox = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0vf0axgrm95bs3y0x5gdb76xawfh210yxplj7jbwr6z7n88i1axn"; + sha256 = "056snhim934xysz630ysfbfdxa64vin5y24h2ha1wvj9fqg9qvj9"; type = "gem"; }; - version = "1.3.5"; + version = "2.0.0"; }; citrus = { groups = ["default"]; @@ -1158,6 +1158,16 @@ src: }; version = "0.0.4"; }; + devfile = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0v34ivsfpc4d291j89jyg2jz970h94jbz01hdm2jwcmq798yfm98"; + type = "gem"; + }; + version = "0.0.17.pre.alpha1"; + }; device_detector = { groups = ["default"]; platforms = []; @@ -1290,10 +1300,10 @@ src: platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1xi70vfh121an0gjpi388kqdvkaqqycy7kj8r51jhh25g5l5gvnl"; + sha256 = "00z0n4ix21nvqk74hhz5ab811366pdjx99cn2i26yiwpwr1nbi4d"; type = "gem"; }; - version = "1.8.5"; + version = "1.8.6"; }; dotenv = { groups = ["default"]; @@ -2157,10 +2167,10 @@ src: platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "13npl2yqcapsxwzm3b84537sa5s1cplcvba43nlwdcb1d22skfip"; + sha256 = "0ha0n6wkw8xm42v4wx9815ivpwjydp88jv9laq19qljj3w2zwk6z"; type = "gem"; }; - version = "3.9.0"; + version = "3.10.0"; }; gitlab-experiment = { dependencies = ["activesupport" "request_store"]; @@ -2190,20 +2200,20 @@ src: platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1yxz433p9gg8avl94wnb68fm89zaq02r179dkirx5db614vkjfiy"; + sha256 = "0vl64blqz850d5vahwpwyrsvw4iarn578p8bzmcw11imqpnk62pk"; type = "gem"; }; - version = "0.31.1"; + version = "0.32.0"; }; gitlab-license = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0c1dy32ai104nh7npxbzjdfpr2yhx2xdrd81zs5dz1r8ifzgdz1r"; + sha256 = "07pdi9zcifiw8vjv5zz5jdv2gmaq3rkyxfdkn0j3a0cdh9iwgjrc"; type = "gem"; }; - version = "2.2.1"; + version = "2.2.2"; }; gitlab-mail_room = { dependencies = ["jwt" "net-imap" "oauth2"]; @@ -3217,10 +3227,10 @@ src: platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "05lsvxb6mpx5h3zmp3pgs3cp52r1kb3a8yr9j7s3ksajb58zf7qi"; + sha256 = "1nhdllr7zi19b73q0flbc0lhqb5mn0jrw4bqdang7wfxgfdwf6dj"; type = "gem"; }; - version = "0.0.2"; + version = "0.1.0"; }; knapsack = { dependencies = ["rake"]; @@ -3282,10 +3292,10 @@ src: platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1csrkaaqxczq2gc9rmi1524l06wc9bxmivjy9vnlwj5hi4v5ikb8"; + sha256 = "0wnz60wh2yb7s5g7an64cw2brl9vvw960xnq4gs3q6drlgmbjl8g"; type = "gem"; }; - version = "1.3.10"; + version = "1.3.13"; }; letter_opener = { dependencies = ["launchy"]; @@ -3400,21 +3410,21 @@ src: platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1mi4ia13fisc97fzd8xcd9wkjdki7zfbmdn1xkdzplicir68gyp8"; + sha256 = "0nq23yca06rq8qxxymh4nfbx484k2yll54y780b4ilyvmcipyh7c"; type = "gem"; }; - version = "2.20.0"; + version = "2.21.0"; }; lookbook = { - dependencies = ["actioncable" "activemodel" "css_parser" "htmlbeautifier" "htmlentities" "listen" "railties" "redcarpet" "rouge" "view_component" "yard" "zeitwerk"]; + dependencies = ["activemodel" "css_parser" "htmlbeautifier" "htmlentities" "marcel" "railties" "redcarpet" "rouge" "view_component" "yard" "zeitwerk"]; groups = ["development"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0f4b0bp7y7bw57lfynd5d5kgdn0dqkxl2masyk6hvpl5mxsz83sa"; + sha256 = "0jpwfdf6wk77ri85ksmsbxvfb4jpba3bx84j0zg10a4rijf7450g"; type = "gem"; }; - version = "1.5.3"; + version = "2.0.1"; }; lru_redux = { groups = ["default"]; @@ -3749,6 +3759,17 @@ src: }; version = "1.1.0"; }; + neighbor = { + dependencies = ["activerecord"]; + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1r9k34xz7x7fpd18bix0cd5bk2wv6mj8z67f8fr7l30d2717m23h"; + type = "gem"; + }; + version = "0.2.3"; + }; nenv = { groups = ["default" "test"]; platforms = []; @@ -4046,16 +4067,6 @@ src: }; version = "0.0.10"; }; - omniauth-cas3 = { - dependencies = ["addressable" "nokogiri" "omniauth"]; - groups = ["default"]; - platforms = []; - source = { - path = "${src}/vendor/gems/omniauth-cas3"; - type = "path"; - }; - version = "1.1.4"; - }; omniauth-dingtalk-oauth2 = { dependencies = ["omniauth-oauth2"]; groups = ["default"]; @@ -4159,10 +4170,10 @@ src: platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1is4vnikwmd148gpyv3sm57k4cmdx4il5rm2cng6mqhdcgb4yn82"; + sha256 = "01k9rkg97npcgm8r4x3ja8y20hsg4zy0dcjpzafx148q4yxbg74n"; type = "gem"; }; - version = "2.0.0"; + version = "2.1.0"; }; omniauth-twitter = { dependencies = ["omniauth-oauth" "rack"]; @@ -4222,10 +4233,10 @@ src: platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0mcg47zz4w902cq6c8cdj62npawgwq68sfh7n7aqy7vm3pgvls9h"; + sha256 = "0c649921vg2l939z5cc3jwd8p1v49099pdhxfk7sb9qqx5wi5873"; type = "gem"; }; - version = "3.0.2"; + version = "3.1.0"; }; openssl-signature_algorithm = { dependencies = ["openssl"]; @@ -4380,10 +4391,10 @@ src: platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "07m6lxljabw9kyww5k5lgsxsznsm1v5l14r1la09gqka9b5kv3yr"; + sha256 = "1zcvxmfa8hxkhpp59fhxyxy1arp70f11zi1jh9c7bsdfspifb7kb"; type = "gem"; }; - version = "1.4.6"; + version = "1.5.3"; }; pg_query = { dependencies = ["google-protobuf"]; @@ -4461,14 +4472,15 @@ src: version = "0.1.0"; }; prometheus-client-mmap = { + dependencies = ["rb_sys"]; groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0zcw8yx7c2mmmcl3kq7nswansshcpxzqjbxf61xqfydbmhd5z2vi"; + sha256 = "0h4w0947zwwg6kbdnvg4vbmrsc8yf5ijb37sg758apks44imym28"; type = "gem"; }; - version = "0.19.1"; + version = "0.23.1"; }; pry = { dependencies = ["coderay" "method_source"]; @@ -4581,10 +4593,10 @@ src: platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1qgwkcb8kxns8d5187cxjaxf18b7dmg9gh6cr9c1125m0bj2pnfk"; + sha256 = "16w217k9z02c4hqizym8dkj6bqmmzx4qdvqpnskgzf174a5pwdxk"; type = "gem"; }; - version = "2.2.6.4"; + version = "2.2.7"; }; rack-accept = { dependencies = ["rack"]; @@ -4780,6 +4792,16 @@ src: }; version = "0.10.1"; }; + rb_sys = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1zx8v677r2gs050z4cdiflp14kp6nx5z285ynj2ach0w0z7jfm23"; + type = "gem"; + }; + version = "0.9.75"; + }; rbtrace = { dependencies = ["ffi" "msgpack" "optimist"]; groups = ["default"]; @@ -5526,15 +5548,15 @@ src: version = "2.3.7"; }; selenium-webdriver = { - dependencies = ["childprocess" "rubyzip"]; + dependencies = ["rexml" "rubyzip" "websocket"]; groups = ["test"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0adcvp86dinaqq3nhf8p3m0rl2g6q0a4h52k0i7kdnsg1qz9k86y"; + sha256 = "1kxnv3ywssagv2q453hasrrrvsv68d5f3ccm33pyacdji88w8pqg"; type = "gem"; }; - version = "3.142.7"; + version = "4.9.0"; }; semver_dialects = { dependencies = ["pastel" "thor" "tty-command"]; @@ -5601,16 +5623,6 @@ src: }; version = "1.0.1"; }; - settingslogic = { - groups = ["default"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "1ria5zcrk1nf0b9yia15mdpzw0dqr6wjpbj8dsdbbps81lfsj9ar"; - type = "gem"; - }; - version = "2.0.9"; - }; sexp_processor = { groups = ["default"]; platforms = []; @@ -5910,10 +5922,10 @@ src: platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "02r3a3ny27ljj19bzmxscw2vlmk7sw1p4ppbl2i69g17khi0p4sw"; + sha256 = "0bhdgfb0pmw9mav1kw9fn0ka012sa0i3h5ppvqssw5xq48nhxnr8"; type = "gem"; }; - version = "0.2.23"; + version = "0.2.25"; }; state_machines = { groups = ["default"]; @@ -6357,16 +6369,6 @@ src: }; version = "2.0.6"; }; - u2f = { - groups = ["default"]; - platforms = []; - source = { - remotes = ["https://rubygems.org"]; - sha256 = "0lsm1hvwcaa9sq13ab1l1zjk0fgcy951ay11v2acx0h6q1iv21vr"; - type = "gem"; - }; - version = "0.2.1"; - }; uber = { groups = ["default"]; platforms = []; @@ -6541,10 +6543,10 @@ src: platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1h4jhcp4h98lj5f7bn54313na25p9mhal0fw8d8a8m8lq6llgg8b"; + sha256 = "1bwvpkv1iqa8g5cmmllx8fx0nprapzrzfvf1m15rr3wxw5hrbdn8"; type = "gem"; }; - version = "2.74.1"; + version = "2.82.0"; }; virtus = { dependencies = ["axiom-types" "coercible" "descendants_tracker"]; @@ -6631,6 +6633,16 @@ src: }; version = "1.8.1"; }; + websocket = { + groups = ["default" "test"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0dib6p55sl606qb4vpwrvj5wh881kk4aqn2zpfapf8ckx7g14jw8"; + type = "gem"; + }; + version = "1.2.9"; + }; websocket-driver = { dependencies = ["websocket-extensions"]; groups = ["default" "test"]; diff --git a/pkgs/applications/version-management/gitlab/update.py b/pkgs/applications/version-management/gitlab/update.py index b513b71b1bba3..acad2da3dc5b6 100755 --- a/pkgs/applications/version-management/gitlab/update.py +++ b/pkgs/applications/version-management/gitlab/update.py @@ -225,16 +225,7 @@ def update_gitaly(): """Update gitaly""" logger.info("Updating gitaly") data = _get_data_json() - gitaly_server_version = data["passthru"]["GITALY_SERVER_VERSION"] - repo = GitLabRepo(repo="gitaly") - gitaly_dir = pathlib.Path(__file__).parent / "gitaly" - - for fn in ["Gemfile.lock", "Gemfile"]: - with open(gitaly_dir / fn, "w") as f: - f.write(repo.get_file(f"ruby/{fn}", f"v{gitaly_server_version}")) - - subprocess.check_output(["bundle", "lock"], cwd=gitaly_dir) - subprocess.check_output(["bundix"], cwd=gitaly_dir) + gitaly_server_version = data['passthru']['GITALY_SERVER_VERSION'] _call_nix_update("gitaly", gitaly_server_version) diff --git a/pkgs/applications/version-management/gitsign/default.nix b/pkgs/applications/version-management/gitsign/default.nix index 57238eda33470..5da7aab1b6f90 100644 --- a/pkgs/applications/version-management/gitsign/default.nix +++ b/pkgs/applications/version-management/gitsign/default.nix @@ -2,15 +2,15 @@ buildGoModule rec { pname = "gitsign"; - version = "0.6.0"; + version = "0.7.1"; src = fetchFromGitHub { owner = "sigstore"; repo = pname; rev = "v${version}"; - hash = "sha256-VgkTFYnHKpqZOack5SabOFu2BRespVRhgrsepo0V1mI="; + hash = "sha256-99JpuABkPHTNy9OpvRL7aIe1ZTrs2uZvxtxZf8346Ao="; }; - vendorHash = "sha256-zalysp+90+QM5hX7yUudJW61h+3tQOab7ZpcF5kZSB0="; + vendorHash = "sha256-+EKC/Up48EjwfVhLTpoxctWCSMDL0kLZaRPLBl0JGFQ="; subPackages = [ "." diff --git a/pkgs/applications/version-management/josh/default.nix b/pkgs/applications/version-management/josh/default.nix index acf2b24c0794e..a9929cca64e47 100644 --- a/pkgs/applications/version-management/josh/default.nix +++ b/pkgs/applications/version-management/josh/default.nix @@ -1,6 +1,7 @@ { lib , stdenv , fetchFromGitHub +, fetchpatch , rustPlatform , libgit2 , openssl @@ -12,16 +13,26 @@ rustPlatform.buildRustPackage rec { pname = "josh"; - version = "22.06.22"; + version = "23.02.14"; + JOSH_VERSION = "r${version}"; src = fetchFromGitHub { owner = "esrlabs"; repo = "josh"; - rev = "r" + version; - sha256 = "0511qv9zyjvv4zfz6zyi69ssbkrwa24n0ah5w9mb4gzd547as8pq"; + rev = JOSH_VERSION; + sha256 = "1sqa8xi5d55zshky7gicac02f67vp944hclkdsmwy0bczk9hgssr"; }; - cargoSha256 = "0zfjjyyz4pxar1mfkkj9aij4dnwqy3asdrmay1iy6ijjn1qd97n4"; + patches = [ + # Unreleased patch allowing compilation from the GitHub tarball download + (fetchpatch { + name = "josh-version-without-git.patch"; + url = "https://github.com/josh-project/josh/commit/13e7565ab029206598881391db4ddc6dface692b.patch"; + sha256 = "1l5syqj51sn7kcqvffwl6ggn5sq8wfkpviga860agghnw5dpf7ns"; + }) + ]; + + cargoSha256 = "0f6cvz2s8qs53b2g6xja38m24hafqla61s4r5za0a1dyndgms7sl"; nativeBuildInputs = [ pkg-config diff --git a/pkgs/applications/version-management/lefthook/default.nix b/pkgs/applications/version-management/lefthook/default.nix index 1e35634216fa7..91cf55b59086e 100644 --- a/pkgs/applications/version-management/lefthook/default.nix +++ b/pkgs/applications/version-management/lefthook/default.nix @@ -6,7 +6,7 @@ let pname = "lefthook"; - version = "1.4.0"; + version = "1.4.1"; in buildGoModule rec { inherit pname version; @@ -15,10 +15,10 @@ buildGoModule rec { owner = "evilmartians"; repo = "lefthook"; rev = "v${version}"; - hash = "sha256-nov/0iPlMsqFWh//0Mc7JVNiLzX1I0qmkey0fkm+2k8="; + hash = "sha256-odcgO7n39sPUdLaAEQqxx2dZrgmvH3fpqmUYB41GZAE="; }; - vendorHash = "sha256-dWJ8B51zk3uhe8j60wP0PJz/4YhAL7OJbk/96eoLdSs="; + vendorHash = "sha256-V94g7Ua8GWUOWM8Z4ENXmZlHXRUMHb8cKuoTztjHtnc="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/applications/version-management/monotone/default.nix b/pkgs/applications/version-management/monotone/default.nix index 866146e1d8ffb..2db433b3f8c43 100644 --- a/pkgs/applications/version-management/monotone/default.nix +++ b/pkgs/applications/version-management/monotone/default.nix @@ -44,6 +44,11 @@ stdenv.mkDerivation rec { postPatch = '' sed -e 's@/usr/bin/less@${less}/bin/less@' -i src/unix/terminal.cc + '' + lib.optionalString (lib.versionAtLeast boost.version "1.73") '' + find . -type f -exec sed -i \ + -e 's/ E(/ internal_E(/g' \ + -e 's/{E(/{internal_E(/g' \ + {} + ''; CXXFLAGS=" --std=c++11 "; diff --git a/pkgs/applications/version-management/tig/default.nix b/pkgs/applications/version-management/tig/default.nix index ada5f9fea6409..188a0b115fdda 100644 --- a/pkgs/applications/version-management/tig/default.nix +++ b/pkgs/applications/version-management/tig/default.nix @@ -38,7 +38,7 @@ stdenv.mkDerivation rec { cp contrib/vim.tigrc $out/etc/ # Note: Until https://github.com/jonas/tig/issues/940 is resolved it is best - # not to install the ZSH completion so that the fallback implemenation from + # not to install the ZSH completion so that the fallback implementation from # ZSH can be used (Completion/Unix/Command/_git: "_tig () { _git-log }"): #install -D contrib/tig-completion.zsh $out/share/zsh/site-functions/_tig diff --git a/pkgs/applications/video/adl/default.nix b/pkgs/applications/video/adl/default.nix index 621f7246c8abf..9dbec102a55e5 100644 --- a/pkgs/applications/video/adl/default.nix +++ b/pkgs/applications/video/adl/default.nix @@ -38,6 +38,6 @@ stdenv.mkDerivation rec { description = "popcorn anime-downloader + trackma wrapper"; license = licenses.gpl3Plus; platforms = platforms.linux; - maintainers = with maintainers; [ WeebSorceress ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/video/anime-downloader/default.nix b/pkgs/applications/video/anime-downloader/default.nix index 60e89c2fdf680..04833eb4e82a6 100644 --- a/pkgs/applications/video/anime-downloader/default.nix +++ b/pkgs/applications/video/anime-downloader/default.nix @@ -49,6 +49,6 @@ python3.pkgs.buildPythonApplication rec { description = "A simple but powerful anime downloader and streamer"; license = licenses.unlicense; platforms = platforms.linux; - maintainers = with maintainers; [ WeebSorceress ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/applications/video/bilibili/default.nix b/pkgs/applications/video/bilibili/default.nix index a2f3031ab21e9..6713b39e0fcb7 100644 --- a/pkgs/applications/video/bilibili/default.nix +++ b/pkgs/applications/video/bilibili/default.nix @@ -7,10 +7,10 @@ stdenv.mkDerivation rec { pname = "bilibili"; - version = "1.10.1-1"; + version = "1.10.1-4"; src = fetchurl { url = "https://github.com/msojocs/bilibili-linux/releases/download/v${version}/io.github.msojocs.bilibili_${version}_amd64.deb"; - hash = "sha256-Kx45erpxS66/CWmo4Csw0jhp23u03fn7r+vkq5CtJg0="; + hash = "sha256-/jvgCEqd0kSAs3U7eJQ7fFyHdGcyV/7nMnNgQpDVgm0="; }; unpackPhase = '' diff --git a/pkgs/applications/video/bombono/default.nix b/pkgs/applications/video/bombono/default.nix index 2fce4b5448455..8ad77a6680191 100644 --- a/pkgs/applications/video/bombono/default.nix +++ b/pkgs/applications/video/bombono/default.nix @@ -3,7 +3,7 @@ , pkg-config , fetchpatch , scons -, boost172 +, boost , dvdauthor , dvdplusrwtools , enca @@ -22,7 +22,7 @@ let fetchPatchFromAur = {name, sha256}: fetchpatch { inherit name sha256; - url = "https://aur.archlinux.org/cgit/aur.git/plain/${name}?h=e6cc6bc80c672aaa1a2260abfe8823da299a192c"; + url = "https://aur.archlinux.org/cgit/aur.git/plain/${name}?h=766dd4ba1715fc921fe26ce1bdcf22c30f4fc073"; }; in stdenv.mkDerivation rec { @@ -51,6 +51,7 @@ stdenv.mkDerivation rec { {name="fix_throw_specifications.patch"; sha256="sha256-NjCDGwXRCSLcuW2HbPOpXRgNvNQHy7i7hoOgyvGIr7g=";} {name="fix_operator_ambiguity.patch"; sha256="sha256-xx7WyrxEdDrDuz5YoFrM/u2qJru9u6X/4+Y5rJdmmmQ=";} {name="fix_ffmpeg30.patch"; sha256="sha256-vKEbvbjYVRzEaVYC8XOJBPmk6FDXI/WA0X/dldRRO8c=";} + {name="inc_boost_header.patch"; sha256="sha256-76vjkf62VsNJ5FmBEs+X7ZBqjvJ372mjSIreBxNQym8=";} ]); postPatch = '' @@ -61,7 +62,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ wrapGAppsHook scons pkg-config gettext ]; buildInputs = [ - boost172 + boost dvdauthor dvdplusrwtools enca diff --git a/pkgs/applications/video/filebot/default.nix b/pkgs/applications/video/filebot/default.nix index 09f99f400aa6a..ad7b12bfa3312 100644 --- a/pkgs/applications/video/filebot/default.nix +++ b/pkgs/applications/video/filebot/default.nix @@ -1,5 +1,6 @@ { lib, stdenv, fetchurl, coreutils, openjdk17, makeWrapper, autoPatchelfHook , zlib, libzen, libmediainfo, curlWithGnuTls, libmms, glib +, genericUpdater, writeShellScript }: let @@ -43,6 +44,13 @@ in stdenv.mkDerivation rec { ln -s $out/opt/filebot.sh $out/bin/filebot ''; + passthru.updateScript = genericUpdater { + versionLister = writeShellScript "filebot-versionLister" '' + curl -s https://www.filebot.net \ + | sed -rne 's,^.*FileBot_([0-9]*\.[0-9]+\.[0-9]+)-portable.tar.xz.*,\1,p' + ''; + }; + meta = with lib; { description = "The ultimate TV and Movie Renamer"; longDescription = '' diff --git a/pkgs/applications/video/handbrake/default.nix b/pkgs/applications/video/handbrake/default.nix index bd15099b26bac..483d165f947bc 100644 --- a/pkgs/applications/video/handbrake/default.nix +++ b/pkgs/applications/video/handbrake/default.nix @@ -97,12 +97,12 @@ let # Handbrake maintains a set of ffmpeg patches. In particular, these # patches are required for subtitle timing to work correctly. See: # https://github.com/HandBrake/HandBrake/issues/4029 - ffmpeg-version = "5.1.1"; + ffmpeg-version = "5.1.2"; ffmpeg-hb = ffmpeg_5-full.overrideAttrs (old: { version = ffmpeg-version; src = fetchurl { url = "https://www.ffmpeg.org/releases/ffmpeg-${ffmpeg-version}.tar.bz2"; - hash = "sha256-zQ4W+QNCEmbVzN3t97g7nldUrvS596fwbOnkyALwVFs="; + hash = "sha256-OaC8yNmFSfFsVwYkZ4JGpqxzbAZs69tAn5UC6RWyLys="; }; patches = old.patches or [ ] ++ [ "${src}/contrib/ffmpeg/A01-qsv-libavfilter-qsvvpp-change-the-output-frame-s-width-a.patch" @@ -133,7 +133,8 @@ let "${src}/contrib/ffmpeg/A26-Update-the-min-version-to-1.4.23.0-for-AMF-SDK.patch" "${src}/contrib/ffmpeg/A27-avcodec-amfenc-Fixes-the-color-information-in-the-ou.patch" "${src}/contrib/ffmpeg/A28-avcodec-amfenc-HDR-metadata.patch" - "${src}/contrib/ffmpeg/A30-svt-av1-backports.patch" + # This patch is not applying since ffmpeg 5.1.1, probably it was backported by upstream + # "${src}/contrib/ffmpeg/A30-svt-av1-backports.patch" ]; }); diff --git a/pkgs/applications/video/haruna/default.nix b/pkgs/applications/video/haruna/default.nix index 25fac4fba61de..d0214e7032f88 100644 --- a/pkgs/applications/video/haruna/default.nix +++ b/pkgs/applications/video/haruna/default.nix @@ -26,13 +26,13 @@ mkDerivation rec { pname = "haruna"; - version = "0.10.3"; + version = "0.11.0"; src = fetchFromGitLab { owner = "multimedia"; repo = "haruna"; rev = "v${version}"; - hash = "sha256-kXafPUcWWvadGbcN4PAtXlFmfll/mSpwu2Sbh6Gxx4w="; + hash = "sha256-9cN5C+sjnbkChnwKo+pzFsSogkz9l5C1U5DtXzC2kQ4="; domain = "invent.kde.org"; }; diff --git a/pkgs/applications/video/kodi/addons/steam-library/default.nix b/pkgs/applications/video/kodi/addons/steam-library/default.nix index fe772c9f732a9..cf1ad1d8653dd 100644 --- a/pkgs/applications/video/kodi/addons/steam-library/default.nix +++ b/pkgs/applications/video/kodi/addons/steam-library/default.nix @@ -3,13 +3,13 @@ buildKodiAddon rec { pname = "steam-library"; namespace = "plugin.program.steam.library"; - version = "0.8.1"; + version = "0.9.0"; src = fetchFromGitHub { owner = "aanderse"; repo = namespace; rev = "v${version}"; - sha256 = "1ai8k55bamzkx7awk3dl8ksw93pan3h9b1xlylcldy7a0ddldzdg"; + sha256 = "sha256-LVdFih0n/lkjyaYf8jw0IFlcDiXXOtUH2N9OduV1H9Q="; }; propagatedBuildInputs = [ diff --git a/pkgs/applications/video/makemkv/default.nix b/pkgs/applications/video/makemkv/default.nix index 110c48c1e4abb..da22e9a10f114 100644 --- a/pkgs/applications/video/makemkv/default.nix +++ b/pkgs/applications/video/makemkv/default.nix @@ -14,21 +14,21 @@ }: let - version = "1.17.3"; + version = "1.17.4"; # Using two URLs as the first one will break as soon as a new version is released src_bin = fetchurl { urls = [ "http://www.makemkv.com/download/makemkv-bin-${version}.tar.gz" "http://www.makemkv.com/download/old/makemkv-bin-${version}.tar.gz" ]; - sha256 = "1cd633bfb381faa4f22ab57f6b75053c1b18997c223ed7988896c8c15cd1bee0"; + sha256 = "68ebc6f9baba7be4429014b73bdf6da33516a399f011e9e535eb383aff97748b"; }; src_oss = fetchurl { urls = [ "http://www.makemkv.com/download/makemkv-oss-${version}.tar.gz" "http://www.makemkv.com/download/old/makemkv-oss-${version}.tar.gz" ]; - sha256 = "16be3ee29c1dd3d5292f793e9f5efbcd30a59bf035de79586e9afbfa98a6a4cb"; + sha256 = "70e3599dd0a120ababa00d44c93ec8d2d001aea93e902355786ed90a7360cc99"; }; in mkDerivation { diff --git a/pkgs/applications/video/manim/default.nix b/pkgs/applications/video/manim/default.nix index bcb6eca16321a..c4443af00dbe7 100644 --- a/pkgs/applications/video/manim/default.nix +++ b/pkgs/applications/video/manim/default.nix @@ -1,5 +1,6 @@ { lib , fetchFromGitHub +, fetchPypi , cairo , ffmpeg @@ -42,7 +43,30 @@ let fundus-calligra microtype wasysym physics dvisvgm jknapltx wasy cm-super babel-english gnu-freefont mathastext cbfonts-fd; }; -in python3.pkgs.buildPythonApplication rec { + + python = python3.override { + packageOverrides = self: super: { + networkx = super.networkx.overridePythonAttrs (oldAttrs: rec { + pname = "networkx"; + version = "2.8.8"; + src = fetchPypi { + inherit pname version; + hash = "sha256-Iw04gRevhw/OVkejxSQB/PdT6Ucg5uprQZelNVZIiF4="; + }; + }); + + watchdog = super.watchdog.overridePythonAttrs (oldAttrs: rec{ + pname = "watchdog"; + version = "2.3.1"; + src = fetchPypi { + inherit pname version; + hash = "sha256-2fntJu0iqdMxggqEMsNoBwfqi1QSHdzJ3H2fLO6zaQY="; + }; + }); + }; + }; + +in python.pkgs.buildPythonApplication rec { pname = "manim"; format = "pyproject"; version = "0.16.0.post0"; @@ -55,8 +79,8 @@ in python3.pkgs.buildPythonApplication rec { sha256 = "sha256-iXiPnI6lTP51P1X3iLp75ArRP66o8WAANBLoStPrz4M="; }; - nativeBuildInputs = [ - python3.pkgs.poetry-core + nativeBuildInputs = with python.pkgs; [ + poetry-core ]; postPatch = '' @@ -69,7 +93,7 @@ in python3.pkgs.buildPythonApplication rec { buildInputs = [ cairo ]; - propagatedBuildInputs = with python3.pkgs; [ + propagatedBuildInputs = with python.pkgs; [ click click-default-group cloup @@ -106,14 +130,13 @@ in python3.pkgs.buildPythonApplication rec { ]) ]; - nativeCheckInputs = [ - python3.pkgs.pytest-xdist - python3.pkgs.pytestCheckHook - ffmpeg (texlive.combine manim-tinytex) - ]; + ] ++ (with python.pkgs; [ + pytest-xdist + pytestCheckHook + ]); # about 55 of ~600 tests failing mostly due to demand for display disabledTests = import ./failing_tests.nix; diff --git a/pkgs/applications/video/manim/failing_tests.nix b/pkgs/applications/video/manim/failing_tests.nix index 571ddebc74a1f..70c3efbb610c6 100644 --- a/pkgs/applications/video/manim/failing_tests.nix +++ b/pkgs/applications/video/manim/failing_tests.nix @@ -1,5 +1,5 @@ -# reason for failure: tests try to open display [ + # reason for failure: tests try to open display "test_background_color" "test_scene_add_remove" "test_Circle" @@ -46,31 +46,29 @@ "test_force_window_opengl_render_with_format" "test_get_frame_with_preview_disabled" "test_get_frame_with_preview_enabled" -] ++ -# reason for failure: tests try to reach network -[ + # reason for failure: tests try to reach network "test_logging_to_file" "test_plugin_function_like" "test_plugin_no_all" "test_plugin_with_all" -] ++ -# failing with: -# E AssertionError: -# E Not equal to tolerance rtol=1e-07, atol=1.01 -# E Frame no -1. You can use --show_diff to visually show the difference. -# E Mismatched elements: 18525 / 1639680 (1.13%) -# E Max absolute difference: 255 -# E Max relative difference: 255. -[ + # failing with: + # E AssertionError: + # E Not equal to tolerance rtol=1e-07, atol=1.01 + # E Frame no -1. You can use --show_diff to visually show the difference. + # E Mismatched elements: 18525 / 1639680 (1.13%) + # E Max absolute difference: 255 + # E Max relative difference: 255. "test_Text2Color" "test_PointCloudDot" "test_Torus" -] ++ -# failing with: -# TypeError: __init__() got an unexpected keyword argument 'msg' - maybe you meant pytest.mark.skipif? -[ + # failing with: + # TypeError: __init__() got an unexpected keyword argument 'msg' - maybe you meant pytest.mark.skipif? "test_force_window_opengl_render_with_movies" + + # mismatching expecation on the new commandline + "test_manim_new_command" + ] diff --git a/pkgs/applications/video/mkvtoolnix/default.nix b/pkgs/applications/video/mkvtoolnix/default.nix index 7bf52e73f9b1b..1b2e9fdc3c3d8 100644 --- a/pkgs/applications/video/mkvtoolnix/default.nix +++ b/pkgs/applications/video/mkvtoolnix/default.nix @@ -47,13 +47,13 @@ let in stdenv.mkDerivation rec { pname = "mkvtoolnix"; - version = "76.0"; + version = "77.0"; src = fetchFromGitLab { owner = "mbunkus"; repo = "mkvtoolnix"; rev = "release-${version}"; - sha256 = "sha256-jeuok3sspLQRnLCYvsmIbjhuf00eSS/4FjmzlRyzYzc="; + sha256 = "t+kfFS5c8w+c9wxNh59nceFesfdMy8qvHlUqDbZAxkk="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/video/mpv/scripts/thumbfast.nix b/pkgs/applications/video/mpv/scripts/thumbfast.nix index 7614cc171e8c4..fb231d87ca325 100644 --- a/pkgs/applications/video/mpv/scripts/thumbfast.nix +++ b/pkgs/applications/video/mpv/scripts/thumbfast.nix @@ -2,13 +2,13 @@ stdenvNoCC.mkDerivation { name = "mpv-thumbfast"; - version = "unstable-2023-05-12"; + version = "unstable-2023-06-04"; src = fetchFromGitHub { owner = "po5"; repo = "thumbfast"; - rev = "10e9f6133d4ea88e3e5d154969abfaee17173570"; - hash = "sha256-3fzkAR/itgheXQHTr30XPQR3NpYpIVeZfkcBxEoAnGg="; + rev = "6f1d92da25a7b807427f55f085e7ad4d60c4e0d7"; + hash = "sha256-7CCxMPmZZRDIcWn+YbV4xzZFL80qZS5UFA25E+Y2P2Q="; }; postPatch = '' @@ -32,7 +32,7 @@ stdenvNoCC.mkDerivation { meta = { description = "High-performance on-the-fly thumbnailer for mpv"; homepage = "https://github.com/po5/thumbfast"; - license = lib.licenses.unfree; # no explicit licensing information available at this time + license = lib.licenses.mpl20; maintainers = with lib.maintainers; [ apfelkuchen6 ]; }; } diff --git a/pkgs/applications/video/obs-studio/plugins/obs-vkcapture.nix b/pkgs/applications/video/obs-studio/plugins/obs-vkcapture.nix index 2c987d5ca9324..052c536e54018 100644 --- a/pkgs/applications/video/obs-studio/plugins/obs-vkcapture.nix +++ b/pkgs/applications/video/obs-studio/plugins/obs-vkcapture.nix @@ -18,15 +18,15 @@ , obs-vkcapture32 }: -stdenv.mkDerivation rec { +stdenv.mkDerivation (finalAttrs: { pname = "obs-vkcapture"; - version = "1.3.2"; + version = "1.3.3"; src = fetchFromGitHub { owner = "nowrep"; - repo = pname; - rev = "v${version}"; - hash = "sha256-UQQ8oBEnOxmSN4ZyW4LdPZYvd5eB9EmdR0UvE1wgMZw="; + repo = finalAttrs.pname; + rev = "v${finalAttrs.version}"; + hash = "sha256-pvJzzDbsmsu46C8Jki+eMfCZLejkgvqns2hVNDtpSk0="; }; cmakeFlags = lib.optionals stdenv.isi686 [ @@ -60,8 +60,9 @@ stdenv.mkDerivation rec { meta = with lib; { description = "OBS Linux Vulkan/OpenGL game capture"; homepage = "https://github.com/nowrep/obs-vkcapture"; + changelog = "https://github.com/nowrep/obs-vkcapture/releases/tag/v${finalAttrs.version}"; maintainers = with maintainers; [ atila pedrohlc ]; license = licenses.gpl2Only; platforms = platforms.linux; }; -} +}) diff --git a/pkgs/applications/video/srt-live-server/add-ctime-include.patch b/pkgs/applications/video/srt-live-server/add-ctime-include.patch new file mode 100644 index 0000000000000..2e1931ab1222c --- /dev/null +++ b/pkgs/applications/video/srt-live-server/add-ctime-include.patch @@ -0,0 +1,11 @@ +diff --git a/slscore/common.hpp b/slscore/common.hpp +index 30aeeea..bed0e62 100644 +--- a/slscore/common.hpp ++++ b/slscore/common.hpp +@@ -29,6 +29,7 @@ + #include <stddef.h> + #include <stdint.h> + #include <string> ++#include <ctime> + #include <vector> + #include <unistd.h> diff --git a/pkgs/applications/video/srt-live-server/default.nix b/pkgs/applications/video/srt-live-server/default.nix index e02d15a595bf6..8bc3cd330b65b 100644 --- a/pkgs/applications/video/srt-live-server/default.nix +++ b/pkgs/applications/video/srt-live-server/default.nix @@ -19,6 +19,9 @@ stdenv.mkDerivation rec { patches = [ # https://github.com/Edward-Wu/srt-live-server/pull/94 ./fix-insecure-printfs.patch + + # https://github.com/Edward-Wu/srt-live-server/pull/127 # adds `#include <ctime>` + ./add-ctime-include.patch ]; buildInputs = [ srt zlib ]; diff --git a/pkgs/applications/video/youtube-tui/default.nix b/pkgs/applications/video/youtube-tui/default.nix index 89a0848ce1084..8eb4623356ee9 100644 --- a/pkgs/applications/video/youtube-tui/default.nix +++ b/pkgs/applications/video/youtube-tui/default.nix @@ -15,16 +15,16 @@ rustPlatform.buildRustPackage rec { pname = "youtube-tui"; - version = "0.7.1"; + version = "0.7.2"; src = fetchFromGitHub { owner = "Siriusmart"; repo = pname; rev = "v${version}"; - hash = "sha256-Dhdtdc8LmTeg9cxKPfdxRowTsAaJXKtvJXqJHK1t3P4="; + hash = "sha256-gogV/+zo/Spg5d8Fh4gDTJL4ojdWbB6mDbppF0i+H20="; }; - cargoHash = "sha256-hT3Ygn0zcQdU1iU22e5SP5ZF6S6GiZzWieBsCqViN8Y="; + cargoHash = "sha256-TUq/Kix+Z+rELN7x3/gmFOtpa1bj/xakiYDYSyVtA/s="; nativeBuildInputs = [ pkg-config diff --git a/pkgs/applications/virtualization/containerd/default.nix b/pkgs/applications/virtualization/containerd/default.nix index 4f1c0c5efdea0..33fb9457ba203 100644 --- a/pkgs/applications/virtualization/containerd/default.nix +++ b/pkgs/applications/virtualization/containerd/default.nix @@ -11,13 +11,13 @@ buildGoModule rec { pname = "containerd"; - version = "1.7.1"; + version = "1.7.2"; src = fetchFromGitHub { owner = "containerd"; repo = "containerd"; rev = "v${version}"; - hash = "sha256-WwedtcsrDQwMQcKFO5nnPiHyGJpl5hXZlmpbBe1/ftY="; + hash = "sha256-L4zaA+kMBz2tRMbitZUxb9/wdimSO2njx6ozvyKKlkk="; }; vendorHash = null; diff --git a/pkgs/applications/virtualization/lima/default.nix b/pkgs/applications/virtualization/lima/default.nix index 7924d7f70f6f0..cf40f599785c5 100644 --- a/pkgs/applications/virtualization/lima/default.nix +++ b/pkgs/applications/virtualization/lima/default.nix @@ -11,16 +11,16 @@ buildGoModule rec { pname = "lima"; - version = "0.15.1"; + version = "0.16.0"; src = fetchFromGitHub { owner = "lima-vm"; repo = pname; rev = "v${version}"; - sha256 = "sha256-uZE827dc79i7JPxHDI3kmAANN9XUIuhR0c9BUe92DyQ="; + sha256 = "sha256-6BNUuYAy3rUpPeUsbLRpz0+LdgVeHjlVjmQRcuFSXEg="; }; - vendorHash = "sha256-CysPzlup8TVVR4rCm3cWTjnxwJznMv0wbaeCC0ofWSU="; + vendorHash = "sha256-KuMEAlXvW5FhTC7HQa3CoqRlhtwSBzjk+dgAnzScfno="; nativeBuildInputs = [ makeWrapper installShellFiles ] ++ lib.optionals stdenv.isDarwin [ xcbuild.xcrun sigtool ]; diff --git a/pkgs/applications/virtualization/pods/Cargo.lock b/pkgs/applications/virtualization/pods/Cargo.lock index a900b2bafb2ca..7de6c8d42d4ea 100644 --- a/pkgs/applications/virtualization/pods/Cargo.lock +++ b/pkgs/applications/virtualization/pods/Cargo.lock @@ -30,6 +30,12 @@ dependencies = [ ] [[package]] +name = "android-tzdata" +version = "0.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e999941b234f3131b00bc13c22d06e8c5ff726d1b6318ac7eb276997bbb4fef0" + +[[package]] name = "android_system_properties" version = "0.1.5" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -83,7 +89,7 @@ checksum = "0e97ce7de6cf12de5d7226c73f5ba9811622f4db3a5b91b55c53e987e5f91cba" dependencies = [ "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", ] [[package]] @@ -94,7 +100,7 @@ checksum = "b9ccdd8f2a161be9bd5c023df56f1b2a0bd1d83872ae53b71a84a12c9bf6e842" dependencies = [ "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", ] [[package]] @@ -221,13 +227,13 @@ checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" [[package]] name = "chrono" -version = "0.4.24" +version = "0.4.26" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4e3c5919066adf22df73762e50cffcde3a758f2a848b113b586d1f86728b673b" +checksum = "ec837a71355b28f6556dbd569b37b3f363091c0bd4b2e735674521b4c5fd9bc5" dependencies = [ + "android-tzdata", "iana-time-zone", "js-sys", - "num-integer", "num-traits", "serde", "time 0.1.45", @@ -249,8 +255,7 @@ dependencies = [ [[package]] name = "containers-api" version = "0.8.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ef94b0ff8338282b35bafb408eb0a3e53ba05bdb3b36840589ab9a67a6682593" +source = "git+https://github.com/vv9k/containers-api#00efa72b05225df04f030284cd924cd9688a37a0" dependencies = [ "chrono", "flate2", @@ -366,7 +371,7 @@ checksum = "5e9a1f9f7d83e59740248a6e14ecf93929ade55027844dfcea78beafccc15745" dependencies = [ "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", ] [[package]] @@ -517,7 +522,7 @@ checksum = "89ca545a94061b6365f2c7355b4b32bd20df3ff95f02da9329b34ccc3bd6ee72" dependencies = [ "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", ] [[package]] @@ -1244,12 +1249,9 @@ dependencies = [ [[package]] name = "log" -version = "0.4.17" +version = "0.4.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "abb12e687cfb44aa40f41fc3978ef76448f9b6038cad6aef4259d3c095a2382e" -dependencies = [ - "cfg-if", -] +checksum = "518ef76f2f87365916b142844c16d8fefd85039bc5699050210a7778ee1cd1de" [[package]] name = "malloc_buf" @@ -1307,14 +1309,13 @@ dependencies = [ [[package]] name = "mio" -version = "0.8.6" +version = "0.8.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5b9d9a46eff5b4ff64b45a9e316a6d1e0bc719ef429cbec4dc630684212bfdf9" +checksum = "927a765cd3fc26206e66b296465fa9d3e5ab003e651c1b3c060e7956d96b19d2" dependencies = [ "libc", - "log", "wasi 0.11.0+wasi-snapshot-preview1", - "windows-sys 0.45.0", + "windows-sys 0.48.0", ] [[package]] @@ -1483,9 +1484,9 @@ dependencies = [ [[package]] name = "once_cell" -version = "1.17.1" +version = "1.17.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b7e5500299e16ebb147ae15a00a942af264cf3688f47923b8fc2cd5858f23ad3" +checksum = "9670a07f94779e00908f3e686eab508878ebb390ba6e604d3a284c00e8d0487b" [[package]] name = "oo7" @@ -1615,7 +1616,7 @@ checksum = "39407670928234ebc5e6e580247dd567ad73a3578460c5990f9503df207e8f07" dependencies = [ "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", ] [[package]] @@ -1639,7 +1640,7 @@ checksum = "26072860ba924cbfa98ea39c8c19b4dd6a4a25423dbdf219c1eca91aa0cf6964" [[package]] name = "podman-api" version = "0.10.0" -source = "git+https://github.com/vv9k/podman-api-rs.git#363d945b9b9905c50dfa0bfe0f9331f9fdeef079" +source = "git+https://github.com/vv9k/podman-api-rs.git#92dd1200bc627709a290c094c4887638077c6d50" dependencies = [ "base64", "byteorder", @@ -1672,7 +1673,7 @@ dependencies = [ [[package]] name = "pods" -version = "1.2.1" +version = "1.2.2" dependencies = [ "anyhow", "ashpd", @@ -1740,18 +1741,18 @@ dependencies = [ [[package]] name = "proc-macro2" -version = "1.0.58" +version = "1.0.59" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fa1fb82fc0c281dd9671101b66b771ebbe1eaf967b96ac8740dcba4b70005ca8" +checksum = "6aeca18b86b413c660b781aa319e4e2648a3e6f9eadc9b47e9038e6fe9f3451b" dependencies = [ "unicode-ident", ] [[package]] name = "quote" -version = "1.0.27" +version = "1.0.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8f4f29d145265ec1c483c7c654450edde0bfe043d3938d6972630663356d9500" +checksum = "1b9ab9c7eadfd8df19006f1cf1a4aed13540ed5cbc047010ece5826e10825488" dependencies = [ "proc-macro2", ] @@ -1884,7 +1885,7 @@ checksum = "8c805777e3930c8883389c602315a24224bcc738b63905ef87cd1420353ea93e" dependencies = [ "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", ] [[package]] @@ -1906,7 +1907,7 @@ checksum = "bcec881020c684085e55a25f7fd888954d56609ef363479dc5a1305eb0d40cab" dependencies = [ "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", ] [[package]] @@ -2032,9 +2033,9 @@ dependencies = [ [[package]] name = "syn" -version = "2.0.16" +version = "2.0.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a6f671d4b5ffdb8eadec19c0ae67fe2639df8684bd7bc4b83d986b8db549cf01" +checksum = "32d41677bcbe24c20c52e7c70b0d8db04134c5d1066bf98662e2871ad200ea3e" dependencies = [ "proc-macro2", "quote", @@ -2120,7 +2121,7 @@ checksum = "f9456a42c5b0d803c8cd86e73dd7cc9edd429499f37a3550d286d5e86720569f" dependencies = [ "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", ] [[package]] @@ -2180,9 +2181,9 @@ checksum = "1f3ccbac311fea05f86f61904b462b55fb3df8837a366dfc601a0161d0532f20" [[package]] name = "tokio" -version = "1.28.1" +version = "1.28.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0aa32867d44e6f2ce3385e89dceb990188b8bb0fb25b0cf576647a6f98ac5105" +checksum = "94d7b1cfd2aa4011f2de74c2c4c63665e27a71006b0a192dcd2710272e73dfa2" dependencies = [ "autocfg", "bytes 1.4.0", @@ -2281,7 +2282,7 @@ checksum = "0f57e3ca2a01450b1a921183a9c9cbfda207fd822cef4ccb00a65402cbba7a74" dependencies = [ "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", ] [[package]] @@ -2461,7 +2462,7 @@ dependencies = [ "once_cell", "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", "wasm-bindgen-shared", ] @@ -2483,7 +2484,7 @@ checksum = "e128beba882dd1eb6200e1dc92ae6c5dbaa4311aa7bb211ca035779e5efc39f8" dependencies = [ "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", "wasm-bindgen-backend", "wasm-bindgen-shared", ] @@ -2762,7 +2763,7 @@ checksum = "ce36e65b0d2999d2aafac989fb249189a141aee1f53c612c1f37d72631959f69" dependencies = [ "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", ] [[package]] diff --git a/pkgs/applications/virtualization/pods/default.nix b/pkgs/applications/virtualization/pods/default.nix index 4c8e0cc3961e4..6a725f4395020 100644 --- a/pkgs/applications/virtualization/pods/default.nix +++ b/pkgs/applications/virtualization/pods/default.nix @@ -19,19 +19,20 @@ stdenv.mkDerivation rec { pname = "pods"; - version = "1.2.1"; + version = "1.2.2"; src = fetchFromGitHub { owner = "marhkb"; repo = pname; rev = "v${version}"; - sha256 = "sha256-xi9PmgSINW64vl1skQFjkTqnC6Dfty9eVFVFmMy9K9E="; + sha256 = "sha256-9gSLjnBExxLhbrsD2nYPwoUCmc2gE+afblQOcnWPap0="; }; cargoDeps = rustPlatform.importCargoLock { lockFile = ./Cargo.lock; outputHashes = { - "podman-api-0.10.0" = "sha256-zZUQdBbzIfClS2EDSkOTlR1e0R9lYbbgsICZeo6Yalc="; + "containers-api-0.8.0" = "sha256-jttd4n45OcsWWBu7nAL0Ny0ILjsAKtAIQN+Vkv34gdM="; + "podman-api-0.10.0" = "sha256-P3a/OgH26EFWJjYkEob4Cg90U5cR/fBF0LcFlosJlcU="; }; }; diff --git a/pkgs/applications/virtualization/virtualbox/default.nix b/pkgs/applications/virtualization/virtualbox/default.nix index fc3303baf339b..1610fe120070b 100644 --- a/pkgs/applications/virtualization/virtualbox/default.nix +++ b/pkgs/applications/virtualization/virtualbox/default.nix @@ -1,5 +1,5 @@ { config, stdenv, fetchurl, lib, acpica-tools, dev86, pam, libxslt, libxml2, wrapQtAppsHook -, libX11, xorgproto, libXext, libXcursor, libXmu, libIDL, SDL, libcap, libGL +, libX11, xorgproto, libXext, libXcursor, libXmu, libIDL, SDL2, libcap, libGL, libGLU , libpng, glib, lvm2, libXrandr, libXinerama, libopus, qtbase, qtx11extras , qttools, qtsvg, qtwayland, pkg-config, which, docbook_xsl, docbook_xml_dtd_43 , alsa-lib, curl, libvpx, nettools, dbus, substituteAll, gsoap, zlib @@ -24,14 +24,14 @@ let buildType = "release"; # Use maintainers/scripts/update.nix to update the version and all related hashes or # change the hashes in extpack.nix and guest-additions/default.nix as well manually. - version = "7.0.6"; + version = "7.0.8"; in stdenv.mkDerivation { pname = "virtualbox"; inherit version; src = fetchurl { - url = "https://download.virtualbox.org/virtualbox/${version}/VirtualBox-${version}.tar.bz2"; - sha256 = "f146d9a86a35af0abb010e628636fd800cb476cc2ce82f95b0c0ca876e1756ff"; + url = "https://download.virtualbox.org/virtualbox/${version}/VirtualBox-${version}a.tar.bz2"; + sha256 = "7de37359518d467b7f888235175cd388f66e9f16bd9359dd6265fbc95933c1e6"; }; outputs = [ "out" "modsrc" ]; @@ -45,12 +45,12 @@ in stdenv.mkDerivation { buildInputs = [ acpica-tools dev86 libxslt libxml2 xorgproto libX11 libXext libXcursor libIDL libcap glib lvm2 alsa-lib curl libvpx pam makeself perl - libXmu libpng libopus python3 ] + libXmu libXrandr libpng libopus python3 ] ++ optional javaBindings jdk ++ optional pythonBindings python3 # Python is needed even when not building bindings ++ optional pulseSupport libpulseaudio - ++ optionals headless [ libXrandr libGL ] - ++ optionals (!headless) [ qtbase qtx11extras libXinerama SDL ] + ++ optionals headless [ libGL ] + ++ optionals (!headless) [ qtbase qtx11extras libXinerama SDL2 libGLU ] ++ optionals enableWebService [ gsoap zlib ]; hardeningDisable = [ "format" "fortify" "pic" "stackprotector" ]; @@ -82,6 +82,8 @@ in stdenv.mkDerivation { patches = optional enableHardening ./hardened.patch + # Since VirtualBox 7.0.8, VBoxSDL requires SDL2, but the build framework uses SDL1 + ++ optional (!headless) ./fix-sdl.patch ++ [ ./extra_symbols.patch ] # When hardening is enabled, we cannot use wrapQtApp to ensure that VirtualBoxVM sees # the correct environment variables needed for Qt to work, specifically QT_PLUGIN_PATH. diff --git a/pkgs/applications/virtualization/virtualbox/extpack.nix b/pkgs/applications/virtualization/virtualbox/extpack.nix index 7e27e79d5dd73..7e2ed37992db8 100644 --- a/pkgs/applications/virtualization/virtualbox/extpack.nix +++ b/pkgs/applications/virtualization/virtualbox/extpack.nix @@ -12,14 +12,14 @@ fetchurl rec { # Manually sha256sum the extensionPack file, must be hex! # Thus do not use `nix-prefetch-url` but instead plain old `sha256sum`. # Checksums can also be found at https://www.virtualbox.org/download/hashes/${version}/SHA256SUMS - let value = "292961aa8723b54f96f89f6d8abf7d8e29259d94b7de831dbffb9ae15d346434"; + let value = "452320f3b1da42b30c32ea5ab5887983b575638ceb4e3beacfefbbb3b0510a48"; in assert (builtins.stringLength value) == 64; value; meta = { description = "Oracle Extension pack for VirtualBox"; license = licenses.virtualbox-puel; homepage = "https://www.virtualbox.org/"; - maintainers = with maintainers; [ sander cdepillabout ]; + maintainers = with maintainers; [ sander ]; platforms = [ "x86_64-linux" ]; }; } diff --git a/pkgs/applications/virtualization/virtualbox/fix-sdl.patch b/pkgs/applications/virtualization/virtualbox/fix-sdl.patch new file mode 100644 index 0000000000000..2f16470c48c78 --- /dev/null +++ b/pkgs/applications/virtualization/virtualbox/fix-sdl.patch @@ -0,0 +1,72 @@ +diff --git a/configure b/configure +index 5edefba..a17e8c5 100755 +--- a/configure ++++ b/configure +@@ -1184,10 +1184,10 @@ check_sdl() + fail + fi + else +- if which_wrapper sdl-config > /dev/null; then +- FLGSDL=`sdl-config --cflags` ++ if which_wrapper sdl2-config > /dev/null; then ++ FLGSDL=`sdl2-config --cflags` + INCSDL=`strip_I "$FLGSDL"` +- LIBSDL=`sdl-config --libs` ++ LIBSDL=`sdl2-config --libs` + LIBSDLMAIN="-lSDLmain" + FLDSDL= + foundsdl=1 +diff --git a/src/VBox/Frontends/VBoxSDL/Framebuffer.cpp b/src/VBox/Frontends/VBoxSDL/Framebuffer.cpp +index 16dc282..4889865 100644 +--- a/src/VBox/Frontends/VBoxSDL/Framebuffer.cpp ++++ b/src/VBox/Frontends/VBoxSDL/Framebuffer.cpp +@@ -56,7 +56,7 @@ using namespace com; + # pragma warning(push) + # pragma warning(disable: 4121) /* warning C4121: 'SDL_SysWMmsg' : alignment of a member was sensitive to packing*/ + # endif +-# include <SDL_syswm.h> /* for SDL_GetWMInfo() */ ++# include <SDL2/SDL_syswm.h> /* for SDL_GetWMInfo() */ + # ifdef _MSC_VER + # pragma warning(pop) + # endif +diff --git a/src/VBox/Frontends/VBoxSDL/Makefile.kmk b/src/VBox/Frontends/VBoxSDL/Makefile.kmk +index da43153..2aa8cd7 100644 +--- a/src/VBox/Frontends/VBoxSDL/Makefile.kmk ++++ b/src/VBox/Frontends/VBoxSDL/Makefile.kmk +@@ -79,10 +79,6 @@ if !defined(VBOX_WITH_HARDENING) || "$(KBUILD_TARGET)" != "darwin" # No hardened + VBoxSDL_INCS += \ + $(VBOX_XCURSOR_INCS) + endif +- ifn1of ($(KBUILD_TARGET), solaris) # Probably wrong with SDL2 +- VBoxSDL_LIBS = \ +- $(LIB_SDK_LIBSDL2_SDLMAIN) +- endif + if1of ($(KBUILD_TARGET), freebsd linux netbsd openbsd solaris) # X11 + VBoxSDL_LIBS += \ + $(PATH_STAGE_DLL)/VBoxKeyboard$(VBOX_SUFF_DLL) \ +diff --git a/src/VBox/Frontends/VBoxSDL/VBoxSDL.cpp b/src/VBox/Frontends/VBoxSDL/VBoxSDL.cpp +index 065c391..22788e1 100644 +--- a/src/VBox/Frontends/VBoxSDL/VBoxSDL.cpp ++++ b/src/VBox/Frontends/VBoxSDL/VBoxSDL.cpp +@@ -64,7 +64,7 @@ using namespace com; + # pragma warning(disable: 4121) /* warning C4121: 'SDL_SysWMmsg' : alignment of a member was sensitive to packing*/ + #endif + #ifndef RT_OS_DARWIN +-# include <SDL_syswm.h> /* for SDL_GetWMInfo() */ ++# include <SDL2/SDL_syswm.h> /* for SDL_GetWMInfo() */ + #endif + #ifdef _MSC_VER + # pragma warning(pop) +diff --git a/src/VBox/Frontends/VBoxSDL/VBoxSDL.h b/src/VBox/Frontends/VBoxSDL/VBoxSDL.h +index dde548f..8fc9fb3 100644 +--- a/src/VBox/Frontends/VBoxSDL/VBoxSDL.h ++++ b/src/VBox/Frontends/VBoxSDL/VBoxSDL.h +@@ -45,7 +45,7 @@ + # pragma warning(disable: 4121) /* warning C4121: 'SDL_SysWMmsg' : alignment of a member was sensitive to packing*/ + # pragma warning(disable: 4668) /* warning C4668: '__GNUC__' is not defined as a preprocessor macro, replacing with '0' for '#if/#elif' */ + #endif +-#include <SDL.h> ++#include <SDL2/SDL.h> + #ifdef _MSC_VER + # pragma warning(pop) + #endif diff --git a/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix b/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix index 0601aa3e44a20..1e6cfcf4eb76a 100644 --- a/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix +++ b/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix @@ -23,7 +23,7 @@ in stdenv.mkDerivation rec { src = fetchurl { url = "http://download.virtualbox.org/virtualbox/${version}/VBoxGuestAdditions_${version}.iso"; - sha256 = "21e0f407d2a4f5c286084a70718aa20235ea75969eca0cab6cfab43a3499a010"; + sha256 = "8d73e2361afbf696e6128ffa5e96d9f6a78ff32cb2cb54c727a5be7992be0b31"; }; KERN_DIR = "${kernel.dev}/lib/modules/${kernel.modDirVersion}/build"; diff --git a/pkgs/applications/virtualization/virtualbox/hardened.patch b/pkgs/applications/virtualization/virtualbox/hardened.patch index 786a476df51c4..eb53e0d1421e6 100644 --- a/pkgs/applications/virtualization/virtualbox/hardened.patch +++ b/pkgs/applications/virtualization/virtualbox/hardened.patch @@ -1,8 +1,8 @@ diff --git a/include/iprt/mangling.h b/include/iprt/mangling.h -index 25b918d1..1420ff1d 100644 +index 991dd9e..defc781 100644 --- a/include/iprt/mangling.h +++ b/include/iprt/mangling.h -@@ -1695,6 +1695,7 @@ +@@ -1802,6 +1802,7 @@ # define RTPathStripSuffix RT_MANGLER(RTPathStripSuffix) # define RTPathStripFilename RT_MANGLER(RTPathStripFilename) # define RTPathStripTrailingSlash RT_MANGLER(RTPathStripTrailingSlash) @@ -10,7 +10,7 @@ index 25b918d1..1420ff1d 100644 # define RTPathTemp RT_MANGLER(RTPathTemp) # define RTPathTraverseList RT_MANGLER(RTPathTraverseList) # define RTPathUnlink RT_MANGLER(RTPathUnlink) -@@ -1734,6 +1735,7 @@ +@@ -1842,6 +1843,7 @@ # define RTProcGetAffinityMask RT_MANGLER(RTProcGetAffinityMask) # define RTProcGetExecutablePath RT_MANGLER(RTProcGetExecutablePath) # define RTProcGetPriority RT_MANGLER(RTProcGetPriority) @@ -19,10 +19,10 @@ index 25b918d1..1420ff1d 100644 # define RTProcQueryParent RT_MANGLER(RTProcQueryParent) # define RTProcQueryUsername RT_MANGLER(RTProcQueryUsername) diff --git a/include/iprt/path.h b/include/iprt/path.h -index 99060e35..ccfbeb76 100644 +index 89bf8f6..5caa578 100644 --- a/include/iprt/path.h +++ b/include/iprt/path.h -@@ -1221,6 +1221,15 @@ RTDECL(int) RTPathCalcRelative(char *pszPathDst, size_t cbPathDst, const char *p +@@ -1235,6 +1235,15 @@ RTDECL(int) RTPathCalcRelative(char *pszPathDst, size_t cbPathDst, const char *p */ RTDECL(int) RTPathExecDir(char *pszPath, size_t cchPath); @@ -39,10 +39,10 @@ index 99060e35..ccfbeb76 100644 * Gets the user home directory. * diff --git a/include/iprt/process.h b/include/iprt/process.h -index f4f67dd4..ab882a19 100644 +index 4ca981e..058ae7a 100644 --- a/include/iprt/process.h +++ b/include/iprt/process.h -@@ -352,6 +352,16 @@ RTR3DECL(const char *) RTProcExecutablePath(void); +@@ -384,6 +384,16 @@ RTR3DECL(const char *) RTProcExecutablePath(void); */ RTR3DECL(char *) RTProcGetExecutablePath(char *pszExecPath, size_t cbExecPath); @@ -60,10 +60,10 @@ index f4f67dd4..ab882a19 100644 * Daemonize the current process, making it a background process. * diff --git a/src/VBox/HostDrivers/Support/SUPR3HardenedVerify.cpp b/src/VBox/HostDrivers/Support/SUPR3HardenedVerify.cpp -index 75ff8572..18a077b7 100644 +index e78a397..ff5b541 100644 --- a/src/VBox/HostDrivers/Support/SUPR3HardenedVerify.cpp +++ b/src/VBox/HostDrivers/Support/SUPR3HardenedVerify.cpp -@@ -1531,9 +1531,9 @@ static int supR3HardenedVerifyFsObject(PCSUPR3HARDENEDFSOBJSTATE pFsObjState, bo +@@ -1541,9 +1541,9 @@ static int supR3HardenedVerifyFsObject(PCSUPR3HARDENEDFSOBJSTATE pFsObjState, bo bool fBad = !fRelaxed || pFsObjState->Stat.st_gid != 2 /*bin*/ || suplibHardenedStrCmp(pszPath, "/usr/lib/iconv"); # else NOREF(fRelaxed); @@ -76,10 +76,10 @@ index 75ff8572..18a077b7 100644 "An unknown (and thus untrusted) group has write access to '", pszPath, "' and we therefore cannot trust the directory content or that of any subdirectory"); diff --git a/src/VBox/Main/src-all/MachineLaunchVMCommonWorker.cpp b/src/VBox/Main/src-all/MachineLaunchVMCommonWorker.cpp -index 2991d3a7..d042a08b 100644 +index 01d7a9f..e52a291 100644 --- a/src/VBox/Main/src-all/MachineLaunchVMCommonWorker.cpp +++ b/src/VBox/Main/src-all/MachineLaunchVMCommonWorker.cpp -@@ -90,7 +90,7 @@ int MachineLaunchVMCommonWorker(const Utf8Str &aNameOrId, +@@ -100,7 +100,7 @@ int MachineLaunchVMCommonWorker(const Utf8Str &aNameOrId, /* Get the path to the executable directory w/ trailing slash: */ char szPath[RTPATH_MAX]; @@ -89,10 +89,10 @@ index 2991d3a7..d042a08b 100644 size_t cbBufLeft = RTPathEnsureTrailingSeparator(szPath, sizeof(szPath)); AssertReturn(cbBufLeft > 0, VERR_FILENAME_TOO_LONG); diff --git a/src/VBox/Main/src-server/NetworkServiceRunner.cpp b/src/VBox/Main/src-server/NetworkServiceRunner.cpp -index 2e57690a..3272c840 100644 +index 773d27f..874ec2d 100644 --- a/src/VBox/Main/src-server/NetworkServiceRunner.cpp +++ b/src/VBox/Main/src-server/NetworkServiceRunner.cpp -@@ -188,7 +188,7 @@ int NetworkServiceRunner::start(bool aKillProcessOnStop) +@@ -198,7 +198,7 @@ int NetworkServiceRunner::start(bool aKillProcessOnStop) * ASSUME it is relative to the directory that holds VBoxSVC. */ char szExePath[RTPATH_MAX]; @@ -102,28 +102,28 @@ index 2e57690a..3272c840 100644 int vrc = RTPathAppend(szExePath, sizeof(szExePath), m->pszProcName); AssertLogRelRCReturn(vrc, vrc); diff --git a/src/VBox/Main/src-server/generic/NetIf-generic.cpp b/src/VBox/Main/src-server/generic/NetIf-generic.cpp -index af155966..3b8e793d 100644 +index 1e2eb61..893344c 100644 --- a/src/VBox/Main/src-server/generic/NetIf-generic.cpp +++ b/src/VBox/Main/src-server/generic/NetIf-generic.cpp -@@ -48,7 +48,7 @@ static int NetIfAdpCtl(const char * pcszIfName, const char *pszAddr, const char +@@ -62,7 +62,7 @@ static int NetIfAdpCtl(const char * pcszIfName, const char *pszAddr, const char const char *args[] = { NULL, pcszIfName, pszAddr, pszOption, pszMask, NULL }; char szAdpCtl[RTPATH_MAX]; -- int rc = RTPathExecDir(szAdpCtl, sizeof(szAdpCtl) - sizeof("/" VBOXNETADPCTL_NAME)); -+ int rc = RTPathSuidDir(szAdpCtl, sizeof(szAdpCtl) - sizeof("/" VBOXNETADPCTL_NAME)); - if (RT_FAILURE(rc)) +- int vrc = RTPathExecDir(szAdpCtl, sizeof(szAdpCtl) - sizeof("/" VBOXNETADPCTL_NAME)); ++ int vrc = RTPathSuidDir(szAdpCtl, sizeof(szAdpCtl) - sizeof("/" VBOXNETADPCTL_NAME)); + if (RT_FAILURE(vrc)) { - LogRel(("NetIfAdpCtl: failed to get program path, rc=%Rrc.\n", rc)); -@@ -95,7 +95,7 @@ static int NetIfAdpCtl(HostNetworkInterface * pIf, const char *pszAddr, const ch + LogRel(("NetIfAdpCtl: failed to get program path, vrc=%Rrc.\n", vrc)); +@@ -109,7 +109,7 @@ static int NetIfAdpCtl(HostNetworkInterface * pIf, const char *pszAddr, const ch int NetIfAdpCtlOut(const char * pcszName, const char * pcszCmd, char *pszBuffer, size_t cBufSize) { char szAdpCtl[RTPATH_MAX]; -- int rc = RTPathExecDir(szAdpCtl, sizeof(szAdpCtl) - sizeof("/" VBOXNETADPCTL_NAME " ") - strlen(pcszCmd)); -+ int rc = RTPathSuidDir(szAdpCtl, sizeof(szAdpCtl) - sizeof("/" VBOXNETADPCTL_NAME " ") - strlen(pcszCmd)); - if (RT_FAILURE(rc)) +- int vrc = RTPathExecDir(szAdpCtl, sizeof(szAdpCtl) - sizeof("/" VBOXNETADPCTL_NAME " ") - strlen(pcszCmd)); ++ int vrc = RTPathSuidDir(szAdpCtl, sizeof(szAdpCtl) - sizeof("/" VBOXNETADPCTL_NAME " ") - strlen(pcszCmd)); + if (RT_FAILURE(vrc)) { - LogRel(("NetIfAdpCtlOut: Failed to get program path, rc=%Rrc\n", rc)); -@@ -210,7 +210,7 @@ int NetIfCreateHostOnlyNetworkInterface(VirtualBox *pVirtualBox, + LogRel(("NetIfAdpCtlOut: Failed to get program path, vrc=%Rrc\n", vrc)); +@@ -224,7 +224,7 @@ int NetIfCreateHostOnlyNetworkInterface(VirtualBox *pVirtualBox, progress.queryInterfaceTo(aProgress); char szAdpCtl[RTPATH_MAX]; @@ -133,10 +133,10 @@ index af155966..3b8e793d 100644 { progress->i_notifyComplete(E_FAIL, diff --git a/src/VBox/Runtime/r3/path.cpp b/src/VBox/Runtime/r3/path.cpp -index 4b1a0ada..7f6dd707 100644 +index bcd8deb..46ecd1e 100644 --- a/src/VBox/Runtime/r3/path.cpp +++ b/src/VBox/Runtime/r3/path.cpp -@@ -81,6 +81,12 @@ RTDECL(int) RTPathExecDir(char *pszPath, size_t cchPath) +@@ -91,6 +91,12 @@ RTDECL(int) RTPathExecDir(char *pszPath, size_t cchPath) } @@ -150,10 +150,10 @@ index 4b1a0ada..7f6dd707 100644 { #if !defined(RT_OS_WINDOWS) && defined(RTPATH_APP_PRIVATE) diff --git a/src/VBox/Runtime/r3/process.cpp b/src/VBox/Runtime/r3/process.cpp -index 5f7c7a87..59461cfa 100644 +index f9d1ecf..042e599 100644 --- a/src/VBox/Runtime/r3/process.cpp +++ b/src/VBox/Runtime/r3/process.cpp -@@ -117,6 +117,25 @@ RTR3DECL(const char *) RTProcExecutablePath(void) +@@ -127,6 +127,25 @@ RTR3DECL(const char *) RTProcExecutablePath(void) return g_szrtProcExePath; } diff --git a/pkgs/applications/virtualization/xen/generic.nix b/pkgs/applications/virtualization/xen/generic.nix index dd84f642e32de..826cd8a3d9d84 100644 --- a/pkgs/applications/virtualization/xen/generic.nix +++ b/pkgs/applications/virtualization/xen/generic.nix @@ -116,7 +116,7 @@ stdenv.mkDerivation (rec { # Remove in-tree qemu stuff in case we build from a tar-ball rm -rf tools/qemu-xen tools/qemu-xen-traditional - # Fix shebangs, mainly for build-scipts + # Fix shebangs, mainly for build-scripts # We want to do this before getting prefetched stuff to speed things up # (prefetched stuff has lots of files) find . -type f | xargs sed -i 's@/usr/bin/\(python\|perl\)@/usr/bin/env \1@g' diff --git a/pkgs/applications/window-managers/cage/default.nix b/pkgs/applications/window-managers/cage/default.nix index c1ef0a7fd2683..fafad73527dcb 100644 --- a/pkgs/applications/window-managers/cage/default.nix +++ b/pkgs/applications/window-managers/cage/default.nix @@ -29,6 +29,10 @@ stdenv.mkDerivation rec { systemd libGL libX11 ]; + # https://github.com/cage-kiosk/cage/issues/231 + # cage will segfault on start with `-m last` without this + CFLAGS = "-O0"; + mesonFlags = [ "-Dxwayland=${lib.boolToString (xwayland != null)}" ]; postFixup = lib.optionalString (xwayland != null) '' diff --git a/pkgs/applications/window-managers/cage/wlroots-0_14.patch b/pkgs/applications/window-managers/cage/wlroots-0_14.patch deleted file mode 100644 index 2e56835f4fcda..0000000000000 --- a/pkgs/applications/window-managers/cage/wlroots-0_14.patch +++ /dev/null @@ -1,36 +0,0 @@ -From 9a4523d47efeafd674d419169fe161e5a3b31cb3 Mon Sep 17 00:00:00 2001 -From: Jan Beich <jbeich@FreeBSD.org> -Date: Thu, 3 Jun 2021 17:53:11 +0000 -Subject: [PATCH 1/3] view: chase swaywm/wlroots@9e58301df7f0 - -view.c:238:52: error: no member named 'subsurfaces' in 'struct wlr_surface' - wl_list_for_each (subsurface, &view->wlr_surface->subsurfaces, parent_link) { - ~~~~~~~~~~~~~~~~~ ^ -/usr/include/wayland-util.h:443:30: note: expanded from macro 'wl_list_for_each' - for (pos = wl_container_of((head)->next, pos, member); \ - ^~~~ -/usr/include/wayland-util.h:409:32: note: expanded from macro 'wl_container_of' - (__typeof__(sample))((char *)(ptr) - \ - ^~~ - -Based on https://github.com/swaywm/sway/commit/3162766eef14 ---- - view.c | 5 ++++- - 1 file changed, 4 insertions(+), 1 deletion(-) - -diff --git a/view.c b/view.c -index b9ba9c2..3f3b0ed 100644 ---- a/view.c -+++ b/view.c -@@ -235,7 +235,10 @@ view_map(struct cg_view *view, struct wlr_surface *surface) - view->wlr_surface = surface; - - struct wlr_subsurface *subsurface; -- wl_list_for_each (subsurface, &view->wlr_surface->subsurfaces, parent_link) { -+ wl_list_for_each (subsurface, &view->wlr_surface->subsurfaces_below, parent_link) { -+ subsurface_create(view, subsurface); -+ } -+ wl_list_for_each (subsurface, &view->wlr_surface->subsurfaces_above, parent_link) { - subsurface_create(view, subsurface); - } - diff --git a/pkgs/applications/window-managers/cardboard/default.nix b/pkgs/applications/window-managers/cardboard/default.nix index 115ab3d53e04b..bac7b9f4cf503 100644 --- a/pkgs/applications/window-managers/cardboard/default.nix +++ b/pkgs/applications/window-managers/cardboard/default.nix @@ -57,11 +57,11 @@ let in stdenv.mkDerivation rec { pname = "cardboard"; - version = "0.pre+unstable=2021-05-10"; + version = "unstable=2021-05-10"; src = fetchFromGitLab { owner = "cardboardwm"; - repo = pname; + repo = "cardboard"; rev = "b54758d85164fb19468f5ca52588ebea576cd027"; hash = "sha256-Kn5NyQSDyX7/nn2bKZPnsuepkoppi5XIkdu7IDy5r4w="; }; @@ -73,6 +73,7 @@ stdenv.mkDerivation rec { pkg-config unzip ]; + buildInputs = [ ffmpeg libGL @@ -93,12 +94,12 @@ stdenv.mkDerivation rec { ]; postPatch = '' - (cd subprojects - tar xvf ${cereal-wrap} - unzip ${cereal-wrapdb} - cp -r ${expected-wrap} ${expected-wrap.name} - cp -r ${wlroots-wrap} ${wlroots-wrap.name} - ) + pushd subprojects + tar xvf ${cereal-wrap} + unzip ${cereal-wrapdb} + cp -r ${expected-wrap} ${expected-wrap.name} + cp -r ${wlroots-wrap} ${wlroots-wrap.name} + popd sed '1i#include <functional>' -i cardboard/ViewAnimation.h # gcc12 ''; @@ -112,11 +113,15 @@ stdenv.mkDerivation rec { env.NIX_CFLAGS_COMPILE = toString [ "-Wno-error=array-bounds" ]; # gcc12 - meta = with lib; { + meta = { homepage = "https://gitlab.com/cardboardwm/cardboard"; description = "A scrollable, tiling Wayland compositor inspired on PaperWM"; - license = licenses.gpl3Only; - maintainers = with maintainers; [ AndersonTorres ]; - platforms = with platforms; unix; + license = lib.licenses.gpl3Only; + maintainers = with lib.maintainers; [ AndersonTorres ]; + inherit (wayland.meta) platforms; + knownVulnerabilities = [ + "CVE-2020-11104 (inherited from cereal 1.3.0)" + "CVE-2020-11105 (inherited from cereal 1.3.0)" + ]; }; } diff --git a/pkgs/applications/window-managers/cwm/default.nix b/pkgs/applications/window-managers/cwm/default.nix index 37abe5c154ee2..d46811290a2c3 100644 --- a/pkgs/applications/window-managers/cwm/default.nix +++ b/pkgs/applications/window-managers/cwm/default.nix @@ -12,8 +12,10 @@ stdenv.mkDerivation rec { sha256 = "sha256-lkjsxGMXOrnu4cUiV/TO7yzd9FzM297MhaFKauqmiHo="; }; - nativeBuildInputs = [ pkg-config ]; - buildInputs = [ libX11 libXinerama libXrandr libXft bison ]; + strictDeps = true; + + nativeBuildInputs = [ pkg-config bison ]; + buildInputs = [ libX11 libXinerama libXrandr libXft ]; prePatch = ''sed -i "s@/usr/local@$out@" Makefile''; diff --git a/pkgs/applications/window-managers/dk/default.nix b/pkgs/applications/window-managers/dk/default.nix new file mode 100644 index 0000000000000..761f9029c9eeb --- /dev/null +++ b/pkgs/applications/window-managers/dk/default.nix @@ -0,0 +1,45 @@ +{ lib +, stdenv +, fetchFromBitbucket +, xcbutil +, xcbutilkeysyms +, xcbutilwm +, xcb-util-cursor +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "dk"; + version = "1.9"; + + src = fetchFromBitbucket { + owner = "natemaia"; + repo = "dk"; + rev = "v${finalAttrs.version}"; + hash = "sha256-OodD2z9C4oGTK6ynAXRlEZSzzdzIkVjmq5vLdUcht1U="; + }; + + buildInputs = [ + xcbutil + xcbutilkeysyms + xcbutilwm + xcb-util-cursor + ]; + + postPatch = '' + substituteInPlace Makefile \ + --replace "-L/usr/X11R6/lib" "" \ + --replace "-I/usr/X11R6/include" "" + ''; + + makeFlags = [ "PREFIX=$(out)" "SES=$(out)/share/xsessions" ]; + + enableParallelBuilding = true; + + meta = { + homepage = "https://bitbucket.org/natemaia/dk"; + description = "A list based tiling window manager in the vein of dwm, bspwm, and xmonad"; + license = lib.licenses.x11; + maintainers = with lib.maintainers; [ _3JlOy-PYCCKUi ]; + platforms = lib.platforms.linux; + }; +}) diff --git a/pkgs/applications/window-managers/hyprwm/hyprland/default.nix b/pkgs/applications/window-managers/hyprwm/hyprland/default.nix index 4d0e0cbba2236..cb3934e823abf 100644 --- a/pkgs/applications/window-managers/hyprwm/hyprland/default.nix +++ b/pkgs/applications/window-managers/hyprwm/hyprland/default.nix @@ -38,13 +38,13 @@ in assert assertXWayland; stdenv.mkDerivation (finalAttrs: { pname = "hyprland" + lib.optionalString debug "-debug"; - version = "0.25.0"; + version = "0.26.0"; src = fetchFromGitHub { owner = "hyprwm"; repo = finalAttrs.pname; rev = "v${finalAttrs.version}"; - hash = "sha256-Npf48UUfywneFYGEc7NQ59xudwvw7EJjwweT4tHguIY="; + hash = "sha256-LPih0Q//p8IurXG9kGRVGAqV4AUKVYj9xkk3sYYAj6I="; }; patches = [ diff --git a/pkgs/applications/window-managers/hyprwm/hyprpaper/default.nix b/pkgs/applications/window-managers/hyprwm/hyprpaper/default.nix index 5b7435a2e42ba..11b03bdb30411 100644 --- a/pkgs/applications/window-managers/hyprwm/hyprpaper/default.nix +++ b/pkgs/applications/window-managers/hyprwm/hyprpaper/default.nix @@ -13,13 +13,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "hyprpaper"; - version = "0.2.0"; + version = "0.3.0"; src = fetchFromGitHub { owner = "hyprwm"; repo = finalAttrs.pname; rev = "v${finalAttrs.version}"; - hash = "sha256-rAKfgQJQRsw4QMOXdxfHIh/d5LPY6HHKBX1KtaPs2No="; + hash = "sha256-/ehJbAtSJS86NlqHVOeR2ViBKlImKH4guFVPacTmCr8="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/window-managers/hyprwm/hyprpicker/default.nix b/pkgs/applications/window-managers/hyprwm/hyprpicker/default.nix index 3ed1b23b0a92a..73db7f0353fc1 100644 --- a/pkgs/applications/window-managers/hyprwm/hyprpicker/default.nix +++ b/pkgs/applications/window-managers/hyprwm/hyprpicker/default.nix @@ -23,13 +23,13 @@ }: stdenv.mkDerivation (finalAttrs: { pname = "hyprpicker" + lib.optionalString debug "-debug"; - version = "0.1.0"; + version = "0.1.1"; src = fetchFromGitHub { owner = "hyprwm"; repo = finalAttrs.pname; rev = "v${finalAttrs.version}"; - hash = "sha256-8Tc8am5+iQvzRdnTYIpD3Ewge6TIctrm8tr0H+RvcsE="; + hash = "sha256-k+rG5AZjz47Q6bpVcTK7r4s7Avg3O+1iw+skK+cn0rk="; }; cmakeFlags = lib.optional debug "-DCMAKE_BUILD_TYPE=Debug"; diff --git a/pkgs/applications/window-managers/hyprwm/xdg-desktop-portal-hyprland/source.nix b/pkgs/applications/window-managers/hyprwm/xdg-desktop-portal-hyprland/source.nix index 92126ce9788aa..6b26f0eff4268 100644 --- a/pkgs/applications/window-managers/hyprwm/xdg-desktop-portal-hyprland/source.nix +++ b/pkgs/applications/window-managers/hyprwm/xdg-desktop-portal-hyprland/source.nix @@ -3,7 +3,7 @@ , wayland }: let - version = "0.3.1"; + version = "0.4.0"; in { inherit version; @@ -12,7 +12,7 @@ in owner = "hyprwm"; repo = "xdg-desktop-portal-hyprland"; rev = "v${version}"; - hash = "sha256-zHDa8LCZs05TZHQSIZ3ucwyMPglBGHcqTBzfkLjYXTM="; + hash = "sha256-r+XMyOoRXq+hlfjayb+fyi9kq2JK48TrwuNIAXqlj7U="; }; meta = with lib; { diff --git a/pkgs/applications/window-managers/i3/status-rust.nix b/pkgs/applications/window-managers/i3/status-rust.nix index a064b4272b218..9f71a1421fd6a 100644 --- a/pkgs/applications/window-managers/i3/status-rust.nix +++ b/pkgs/applications/window-managers/i3/status-rust.nix @@ -15,16 +15,16 @@ rustPlatform.buildRustPackage rec { pname = "i3status-rust"; - version = "0.31.5"; + version = "0.31.6"; src = fetchFromGitHub { owner = "greshake"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-4oYj88km7EWxz1DSQt96qcISwZmsNbQMFlxGIJI4FvA="; + hash = "sha256-sQF8POmDEUv3nY9+7Kr0Dcc3q/kpOLwCarexbCQ1zSg="; }; - cargoHash = "sha256-5k95wApVKd0KwQ/LTcqRn12Qx4mL7NialQ6Ne9/pm6I="; + cargoHash = "sha256-+wrZG7jzK8ksTpm6g25O/09sAnMYwmY5DYKqmUMuCFU="; nativeBuildInputs = [ pkg-config makeWrapper ]; diff --git a/pkgs/applications/window-managers/icewm/default.nix b/pkgs/applications/window-managers/icewm/default.nix index 8f171c29963d0..f3fca3c791d22 100644 --- a/pkgs/applications/window-managers/icewm/default.nix +++ b/pkgs/applications/window-managers/icewm/default.nix @@ -41,13 +41,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "icewm"; - version = "3.3.5"; + version = "3.4.0"; src = fetchFromGitHub { owner = "ice-wm"; repo = "icewm"; rev = finalAttrs.version; - hash = "sha256-ZxHeRfdSKhU7osITPLZmC5M2Nji3GjHLPuYphsZXNJw="; + hash = "sha256-5RIjvmoqxMLnSW2P122rEa8MghWfwLHFtYgXwcFPF38="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/window-managers/sway/fx.nix b/pkgs/applications/window-managers/sway/fx.nix index c77273c13a376..d79c9d59bf21d 100644 --- a/pkgs/applications/window-managers/sway/fx.nix +++ b/pkgs/applications/window-managers/sway/fx.nix @@ -2,13 +2,13 @@ sway-unwrapped.overrideAttrs (oldAttrs: rec { pname = "swayfx"; - version = "0.3"; + version = "0.3.1"; src = fetchFromGitHub { owner = "WillPower3309"; repo = "swayfx"; rev = version; - sha256 = "sha256-3Odyeb10AGbNf6TI1W79sLiwB4PrszC5VzjCr7FuPz4="; + sha256 = "sha256-Ox+ror8sCc4mFOqZ1H9782hWbkTSUs5IVYEubHuyoJQ="; }; # This patch was backported into SwayFX diff --git a/pkgs/applications/window-managers/weston/default.nix b/pkgs/applications/window-managers/weston/default.nix index 86b9a84267ccf..fa240d18c96ba 100644 --- a/pkgs/applications/window-managers/weston/default.nix +++ b/pkgs/applications/window-managers/weston/default.nix @@ -1,10 +1,12 @@ { lib, stdenv, fetchurl , meson, ninja, pkg-config, python3, wayland-scanner -, cairo, dbus, lcms2, libdrm, libevdev, libinput, libjpeg, libxkbcommon, mesa -, seatd, wayland, wayland-protocols, xcbutilcursor +, cairo, dbus, libdrm, libevdev, libinput, libxkbcommon, mesa, seatd, wayland +, wayland-protocols, xcbutilcursor , demoSupport ? true , hdrSupport ? true, libdisplay-info +, jpegSupport ? true, libjpeg +, lcmsSupport ? true, lcms2 , pangoSupport ? true, pango , pipewireSupport ? true, pipewire , rdpSupport ? true, freerdp @@ -27,9 +29,11 @@ stdenv.mkDerivation rec { depsBuildBuild = [ pkg-config ]; nativeBuildInputs = [ meson ninja pkg-config python3 wayland-scanner ]; buildInputs = [ - cairo lcms2 libdrm libevdev libinput libjpeg libxkbcommon mesa seatd - wayland wayland-protocols + cairo libdrm libevdev libinput libxkbcommon mesa seatd wayland + wayland-protocols ] ++ lib.optional hdrSupport libdisplay-info + ++ lib.optional jpegSupport libjpeg + ++ lib.optional lcmsSupport lcms2 ++ lib.optional pangoSupport pango ++ lib.optional pipewireSupport pipewire ++ lib.optional rdpSupport freerdp @@ -44,7 +48,9 @@ stdenv.mkDerivation rec { (lib.mesonBool "backend-pipewire" pipewireSupport) (lib.mesonBool "backend-rdp" rdpSupport) (lib.mesonBool "backend-vnc" vncSupport) + (lib.mesonBool "color-management-lcms" lcmsSupport) (lib.mesonBool "demo-clients" demoSupport) + (lib.mesonBool "image-jpeg" jpegSupport) (lib.mesonBool "image-webp" webpSupport) (lib.mesonBool "pipewire" pipewireSupport) (lib.mesonBool "remoting" remotingSupport) diff --git a/pkgs/build-support/fetchgit/default.nix b/pkgs/build-support/fetchgit/default.nix index abd9fb23e052f..3d73eae9821ea 100644 --- a/pkgs/build-support/fetchgit/default.nix +++ b/pkgs/build-support/fetchgit/default.nix @@ -54,16 +54,16 @@ lib.makeOverridable ( */ assert deepClone -> leaveDotGit; -assert nonConeMode -> !(sparseCheckout == "" || sparseCheckout == []); +assert nonConeMode -> (sparseCheckout != []); if md5 != "" then throw "fetchgit does not support md5 anymore, please use sha256" else if hash != "" && sha256 != "" then throw "Only one of sha256 or hash can be set" +else if builtins.isString sparseCheckout then + # Changed to throw on 2023-06-04 + throw "Please provide directories/patterns for sparse checkout as a list of strings. Passing a (multi-line) string is not supported any more." else -# Added 2022-11-12 -lib.warnIf (builtins.isString sparseCheckout) - "Please provide directories/patterns for sparse checkout as a list of strings. Support for passing a (multi-line) string is deprecated and will be removed in the next release." stdenvNoCC.mkDerivation { inherit name; builder = ./builder.sh; @@ -84,7 +84,7 @@ stdenvNoCC.mkDerivation { # git-sparse-checkout(1) says: # > When the --stdin option is provided, the directories or patterns are read # > from standard in as a newline-delimited list instead of from the arguments. - sparseCheckout = if builtins.isString sparseCheckout then sparseCheckout else builtins.concatStringsSep "\n" sparseCheckout; + sparseCheckout = builtins.concatStringsSep "\n" sparseCheckout; inherit url rev leaveDotGit fetchLFS fetchSubmodules deepClone branchName nonConeMode postFetch; diff --git a/pkgs/build-support/fetchgit/nix-prefetch-git b/pkgs/build-support/fetchgit/nix-prefetch-git index 1a0b3bc569194..ba2dfa2fb2c48 100755 --- a/pkgs/build-support/fetchgit/nix-prefetch-git +++ b/pkgs/build-support/fetchgit/nix-prefetch-git @@ -17,8 +17,8 @@ branchName=$NIX_PREFETCH_GIT_BRANCH_NAME out=${out:-} http_proxy=${http_proxy:-} -# allow overwritting cacert's ca-bundle.crt with a custom one -# this can be done by setting NIX_GIT_SSL_CAINFO and NIX_SSL_CERT_FILE enviroment variables for the nix-daemon +# allow overwriting cacert's ca-bundle.crt with a custom one +# this can be done by setting NIX_GIT_SSL_CAINFO and NIX_SSL_CERT_FILE environment variables for the nix-daemon GIT_SSL_CAINFO=${NIX_GIT_SSL_CAINFO:-$GIT_SSL_CAINFO} # populated by clone_user_rev() diff --git a/pkgs/build-support/fetchgithub/default.nix b/pkgs/build-support/fetchgithub/default.nix index fc09c211b4268..faa338b672f0c 100644 --- a/pkgs/build-support/fetchgithub/default.nix +++ b/pkgs/build-support/fetchgithub/default.nix @@ -25,7 +25,7 @@ let }; passthruAttrs = removeAttrs args [ "owner" "repo" "rev" "fetchSubmodules" "forceFetchGit" "private" "githubBase" "varPrefix" ]; varBase = "NIX${if varPrefix == null then "" else "_${varPrefix}"}_GITHUB_PRIVATE_"; - useFetchGit = fetchSubmodules || (leaveDotGit == true) || deepClone || forceFetchGit || !(sparseCheckout == "" || sparseCheckout == []); + useFetchGit = fetchSubmodules || (leaveDotGit == true) || deepClone || forceFetchGit || (sparseCheckout != []); # We prefer fetchzip in cases we don't need submodules as the hash # is more stable in that case. fetcher = if useFetchGit then fetchgit else fetchzip; diff --git a/pkgs/build-support/fetchurl/mirrors.nix b/pkgs/build-support/fetchurl/mirrors.nix index bd338473508ab..2f12be0a897d5 100644 --- a/pkgs/build-support/fetchurl/mirrors.nix +++ b/pkgs/build-support/fetchurl/mirrors.nix @@ -57,8 +57,8 @@ # GCC gcc = [ - "https://bigsearcher.com/mirrors/gcc/" "https://mirror.koddos.net/gcc/" + "https://bigsearcher.com/mirrors/gcc/" "ftp://ftp.nluug.nl/mirror/languages/gcc/" "ftp://ftp.fu-berlin.de/unix/languages/gcc/" "ftp://ftp.irisa.fr/pub/mirrors/gcc.gnu.org/gcc/" @@ -269,7 +269,6 @@ "https://versaweb.dl.sourceforge.net/sourceforge/" "https://freefr.dl.sourceforge.net/sourceforge/" "https://osdn.dl.sourceforge.net/sourceforge/" - "https://kent.dl.sourceforge.net/sourceforge/" ]; # Steam Runtime diff --git a/pkgs/build-support/go/module.nix b/pkgs/build-support/go/module.nix index 2b63d9e9f5336..61abd040a46fb 100644 --- a/pkgs/build-support/go/module.nix +++ b/pkgs/build-support/go/module.nix @@ -2,51 +2,49 @@ { name ? "${args'.pname}-${args'.version}" , src -, nativeBuildInputs ? [] -, passthru ? {} -, patches ? [] +, nativeBuildInputs ? [ ] +, passthru ? { } +, patches ? [ ] -# Go tags, passed to go via -tag -, tags ? [] + # A function to override the go-modules derivation +, overrideModAttrs ? (_oldAttrs: { }) -# A function to override the go-modules derivation -, overrideModAttrs ? (_oldAttrs : {}) - -# path to go.mod and go.sum directory + # path to go.mod and go.sum directory , modRoot ? "./" -# vendorHash is the SRI hash of the vendored dependencies -# -# if vendorHash is null, then we won't fetch any dependencies and -# rely on the vendor folder within the source. + # vendorHash is the SRI hash of the vendored dependencies + # + # if vendorHash is null, then we won't fetch any dependencies and + # rely on the vendor folder within the source. , vendorHash ? args'.vendorSha256 or (throw "buildGoModule: vendorHash is missing") -# Whether to delete the vendor folder supplied with the source. + # Whether to delete the vendor folder supplied with the source. , deleteVendor ? false -# Whether to fetch (go mod download) and proxy the vendor directory. -# This is useful if your code depends on c code and go mod tidy does not -# include the needed sources to build or if any dependency has case-insensitive -# conflicts which will produce platform dependant `vendorHash` checksums. + # Whether to fetch (go mod download) and proxy the vendor directory. + # This is useful if your code depends on c code and go mod tidy does not + # include the needed sources to build or if any dependency has case-insensitive + # conflicts which will produce platform dependant `vendorHash` checksums. , proxyVendor ? false -# We want parallel builds by default + # We want parallel builds by default , enableParallelBuilding ? true -# Do not enable this without good reason -# IE: programs coupled with the compiler + # Do not enable this without good reason + # IE: programs coupled with the compiler , allowGoReference ? false , CGO_ENABLED ? go.CGO_ENABLED -, meta ? {} +, meta ? { } -# Not needed with buildGoModule + # Not needed with buildGoModule , goPackagePath ? "" -# needed for buildFlags{,Array} warning + # needed for buildFlags{,Array} warning , buildFlags ? "" , buildFlagsArray ? "" -, ... }@args': +, ... +}@args': assert goPackagePath != "" -> throw "`goPackagePath` is not needed with `buildGoModule`"; assert (args' ? vendorHash && args' ? vendorSha256) -> throw "both `vendorHash` and `vendorSha256` set. only one can be set."; @@ -55,11 +53,10 @@ let args = removeAttrs args' [ "overrideModAttrs" "vendorSha256" "vendorHash" ]; go-modules = if (vendorHash == null) then "" else - (stdenv.mkDerivation { - + (stdenv.mkDerivation { name = "${name}-go-modules"; - nativeBuildInputs = (args.nativeBuildInputs or []) ++ [ go git cacert ]; + nativeBuildInputs = (args.nativeBuildInputs or [ ]) ++ [ go git cacert ]; inherit (args) src; inherit (go) GOOS GOARCH; @@ -69,8 +66,8 @@ let # out in the wild. In anycase, it's documented in: # doc/languages-frameworks/go.section.md prePatch = args.prePatch or ""; - patches = args.patches or []; - patchFlags = args.patchFlags or []; + patches = args.patches or [ ]; + patchFlags = args.patchFlags or [ ]; postPatch = args.postPatch or ""; preBuild = args.preBuild or ""; postBuild = args.modPostBuild or ""; @@ -79,7 +76,9 @@ let GO111MODULE = "on"; impureEnvVars = lib.fetchers.proxyImpureEnvVars ++ [ - "GIT_PROXY_COMMAND" "SOCKS_SERVER" "GOPROXY" + "GIT_PROXY_COMMAND" + "SOCKS_SERVER" + "GOPROXY" ]; configurePhase = args.modConfigurePhase or '' @@ -105,15 +104,15 @@ let exit 10 fi - ${if proxyVendor then '' - mkdir -p "''${GOPATH}/pkg/mod/cache/download" - go mod download - '' else '' - if (( "''${NIX_DEBUG:-0}" >= 1 )); then - goModVendorFlags+=(-v) - fi - go mod vendor "''${goModVendorFlags[@]}" - ''} + ${if proxyVendor then '' + mkdir -p "''${GOPATH}/pkg/mod/cache/download" + go mod download + '' else '' + if (( "''${NIX_DEBUG:-0}" >= 1 )); then + goModVendorFlags+=(-v) + fi + go mod vendor "''${goModVendorFlags[@]}" + ''} mkdir -p vendor @@ -123,12 +122,12 @@ let installPhase = args.modInstallPhase or '' runHook preInstall - ${if proxyVendor then '' - rm -rf "''${GOPATH}/pkg/mod/cache/download/sumdb" - cp -r --reflink=auto "''${GOPATH}/pkg/mod/cache/download" $out - '' else '' - cp -r --reflink=auto vendor $out - ''} + ${if proxyVendor then '' + rm -rf "''${GOPATH}/pkg/mod/cache/download/sumdb" + cp -r --reflink=auto "''${GOPATH}/pkg/mod/cache/download" $out + '' else '' + cp -r --reflink=auto vendor $out + ''} if ! [ "$(ls -A $out)" ]; then echo "vendor folder is empty, please set 'vendorHash = null;' in your expression" @@ -199,7 +198,7 @@ let declare -a flags flags+=($buildFlags "''${buildFlagsArray[@]}") - flags+=(''${tags:+-tags=${lib.concatStringsSep "," tags}}) + flags+=(''${tags:+-tags=''${tags// /,}}) flags+=(''${ldflags:+-ldflags="$ldflags"}) flags+=("-p" "$NIX_BUILD_CORES") diff --git a/pkgs/build-support/go/package.nix b/pkgs/build-support/go/package.nix index 9dd1cf151294b..b4cb264d9f242 100644 --- a/pkgs/build-support/go/package.nix +++ b/pkgs/build-support/go/package.nix @@ -7,12 +7,6 @@ , preFixup ? "" , shellHook ? "" -# Go linker flags, passed to go via -ldflags -, ldflags ? [] - -# Go tags, passed to go via -tag -, tags ? [] - # We want parallel builds by default , enableParallelBuilding ? true @@ -49,9 +43,6 @@ , meta ? {}, ... } @ args: - -with builtins; - let dep2src = goDep: { @@ -172,7 +163,7 @@ let declare -a flags flags+=($buildFlags "''${buildFlagsArray[@]}") - flags+=(''${tags:+-tags=${lib.concatStringsSep "," tags}}) + flags+=(''${tags:+-tags=''${tags// /,}}) flags+=(''${ldflags:+-ldflags="$ldflags"}) flags+=("-p" "$NIX_BUILD_CORES") diff --git a/pkgs/build-support/remove-references-to/remove-references-to.sh b/pkgs/build-support/remove-references-to/remove-references-to.sh index f1b5dde5f0737..a4d068eb591ee 100755 --- a/pkgs/build-support/remove-references-to/remove-references-to.sh +++ b/pkgs/build-support/remove-references-to/remove-references-to.sh @@ -32,6 +32,6 @@ done for region in "${regions[@]}"; do for hook in "${fixupHooks[@]}"; do - eval "$hook" "$i" + eval "$hook" "$region" done done diff --git a/pkgs/build-support/rust/fetch-cargo-tarball/default.nix b/pkgs/build-support/rust/fetch-cargo-tarball/default.nix index 8c6a97888c10f..adbfe98d81039 100644 --- a/pkgs/build-support/rust/fetch-cargo-tarball/default.nix +++ b/pkgs/build-support/rust/fetch-cargo-tarball/default.nix @@ -62,10 +62,6 @@ in stdenv.mkDerivation ({ export CARGO_HOME=$(mktemp -d cargo-home.XXX) CARGO_CONFIG=$(mktemp cargo-config.XXXX) - # https://blog.rust-lang.org/2023/03/09/Rust-1.68.0.html#cargos-sparse-protocol - # planned to become the default in 1.70 - export CARGO_REGISTRIES_CRATES_IO_PROTOCOL=sparse - if [[ -n "$NIX_CRATES_INDEX" ]]; then cat >$CARGO_HOME/config.toml <<EOF [source.crates-io] diff --git a/pkgs/build-support/setup-hooks/auto-patchelf.py b/pkgs/build-support/setup-hooks/auto-patchelf.py index bb13d2473f6dd..965384b876fcd 100644 --- a/pkgs/build-support/setup-hooks/auto-patchelf.py +++ b/pkgs/build-support/setup-hooks/auto-patchelf.py @@ -109,7 +109,14 @@ def osabi_are_compatible(wanted: str, got: str) -> bool: def glob(path: Path, pattern: str, recursive: bool) -> Iterator[Path]: - return path.rglob(pattern) if recursive else path.glob(pattern) + if path.is_dir(): + return path.rglob(pattern) if recursive else path.glob(pattern) + else: + # path.glob won't return anything if the path is not a directory. + # We extend that behavior by matching the file name against the pattern. + # This allows to pass single files instead of dirs to auto_patchelf, + # for greater control on the files to consider. + return [path] if path.match(pattern) else [] cached_paths: Set[Path] = set() @@ -305,16 +312,21 @@ def main() -> None: "--no-recurse", dest="recursive", action="store_false", - help="Patch only the provided paths, and ignore their children") + help="Disable the recursive traversal of paths to patch.") parser.add_argument( "--paths", nargs="*", type=Path, - help="Paths whose content needs to be patched.") + help="Paths whose content needs to be patched." + " Single files and directories are accepted." + " Directories are traversed recursively by default.") parser.add_argument( "--libs", nargs="*", type=Path, - help="Paths where libraries are searched for.") + help="Paths where libraries are searched for." + " Single files and directories are accepted." + " Directories are not searched recursively.") parser.add_argument( "--runtime-dependencies", nargs="*", type=Path, - help="Paths to prepend to the runtime path of executable binaries.") + help="Paths to prepend to the runtime path of executable binaries." + " Subject to deduplication, which may imply some reordering.") parser.add_argument( "--append-rpaths", nargs="*", diff --git a/pkgs/build-support/setup-hooks/role.bash b/pkgs/build-support/setup-hooks/role.bash index b2d34a1f8606d..bfd6b61f0aed6 100644 --- a/pkgs/build-support/setup-hooks/role.bash +++ b/pkgs/build-support/setup-hooks/role.bash @@ -1,8 +1,8 @@ -# Since the same derivation can be depend on in multiple ways, we need to +# Since the same derivation can be depended on in multiple ways, we need to # accumulate *each* role (i.e. host and target platforms relative the depending # derivation) in which the derivation is used. # -# The role is intened to be use as part of other variables names like +# The role is intended to be used as part of other variables names like # - $NIX_SOMETHING${role_post} function getRole() { @@ -49,7 +49,7 @@ function getTargetRoleEnvHook() { getRole "$depTargetOffset" } -# This variant is inteneded specifically for code-prodocing tool wrapper scripts +# This variant is intended specifically for code-producing tool wrapper scripts # `NIX_@wrapperName@_TARGET_*_@suffixSalt@` tracks this (needs to be an exported # env var so can't use fancier data structures). function getTargetRoleWrapper() { diff --git a/pkgs/data/fonts/iosevka/bin.nix b/pkgs/data/fonts/iosevka/bin.nix index 35e8bdb0e6104..d6df2415d2d83 100644 --- a/pkgs/data/fonts/iosevka/bin.nix +++ b/pkgs/data/fonts/iosevka/bin.nix @@ -11,7 +11,7 @@ let (builtins.attrNames (builtins.removeAttrs variantHashes [ "iosevka" ])); in stdenv.mkDerivation rec { pname = "${name}-bin"; - version = "23.0.0"; + version = "24.1.1"; src = fetchurl { url = "https://github.com/be5invis/Iosevka/releases/download/v${version}/ttc-${name}-${version}.zip"; diff --git a/pkgs/data/fonts/iosevka/default.nix b/pkgs/data/fonts/iosevka/default.nix index 4c954a61e27ce..0c24c1e5c30e4 100644 --- a/pkgs/data/fonts/iosevka/default.nix +++ b/pkgs/data/fonts/iosevka/default.nix @@ -55,16 +55,16 @@ assert (extraParameters != null) -> set != null; buildNpmPackage rec { pname = if set != null then "iosevka-${set}" else "iosevka"; - version = "23.0.0"; + version = "24.1.1"; src = fetchFromGitHub { owner = "be5invis"; repo = "iosevka"; rev = "v${version}"; - hash = "sha256-j7JE9UHG4xho0a4TqG5rpCJkYyVxgoLxBuRtNMGfkrw="; + hash = "sha256-kzf/DFks/Ovhl6uMw5Bqhq+j+alrUd4E49jgSmp2E2k="; }; - npmDepsHash = "sha256-/zutJ4kwGqBe3snMxyvReJdvlcsm+02ZZyFMdNN6gmc="; + npmDepsHash = "sha256-FKA3D05E5A0Z3wdCYLzoTyYKLay25sc3O61rOzkIN2E="; nativeBuildInputs = [ remarshal diff --git a/pkgs/data/fonts/iosevka/variants.nix b/pkgs/data/fonts/iosevka/variants.nix index 3353b103a9f3c..449fa75919683 100644 --- a/pkgs/data/fonts/iosevka/variants.nix +++ b/pkgs/data/fonts/iosevka/variants.nix @@ -1,95 +1,95 @@ # This file was autogenerated. DO NOT EDIT! { - iosevka = "01ps5j77h2s1s5mas5vka62c9svhc788a54l9phklyb0g4yzarlh"; - iosevka-aile = "0q37layqr3457v62lzbx25g1hr3k8szr1ykhbxdkk1ic2q74q1v6"; - iosevka-curly = "1sbs8c0ar4a049qdl55s5v5awf2hifzag6nzaz1r1khzrvdgc9zq"; - iosevka-curly-slab = "0a13zc3jkskpxg7s1w74dygla5j3z11rys7wn5k80gi9kj1qvkrr"; - iosevka-etoile = "11lka6l13p5ng4zh6rcdscaw4l3wiyw7cnkipp4j3vs1xsvn3gnv"; - iosevka-slab = "17hnh2bvf2ikkcnschdbhg7pgi7a0ym9qsnsbjpiyzf606y9258l"; - iosevka-ss01 = "0f77i6221s6l8bf21hjygc09r337phmalff1yvb4wmg94444l9zb"; - iosevka-ss02 = "15lskgdb866ir760xh6mr11j8wpy19aqmf9plxxk5c593lc520dm"; - iosevka-ss03 = "1aj1i4ym9fdpnjrzjqcbwxgkhwf38swhpn23gpnryhpwmyhwpfsq"; - iosevka-ss04 = "1plyk72fhq54gg5ha8wwdrbwzymlblr2j10m6ckghhfvq2kq9zvm"; - iosevka-ss05 = "1qlc5zpg6i7baf88s0jix1b2sq10kf2xrj9ja4i44p9pps2s7ym0"; - iosevka-ss06 = "13j11qdzcqdiqxaz2b4sq52vkff61q3v4sb8bcdw7g0fsh529izd"; - iosevka-ss07 = "17l9slmf5dm2wrslgcdc3d3jx7iwzplc8vbfpph7gmp8gvl57h2q"; - iosevka-ss08 = "1zdcxayk5bxcfjgp4n2kc6c5w4xvdc4y4f11923b00fink74cavb"; - iosevka-ss09 = "06byqvlrw40z3zh7lknrsjrz1dflgxca5ppa441691i9nmip6ivi"; - iosevka-ss10 = "0fmrkfrdhcbrcrc2nrpl2cynp2l8fy9p0xmza927bghz97yvz7gv"; - iosevka-ss11 = "033qliz9dlfg4cbgr2fv9xc1jscn52r2s198hjhlzip40q6qv4wn"; - iosevka-ss12 = "0avv4p9nca65lm97237y09am663ry54y3lq2b7b5pcapqcy4lis0"; - iosevka-ss13 = "0kcjb5jfzfk2r1f32s522fpz5pfmaf497miip37d5ia9cs1r7gcd"; - iosevka-ss14 = "1j735gzbq12xlxxak0kv9bsls7wsmcy3ry1zqfhqy7ca157nnvbf"; - iosevka-ss15 = "0kf9l05hivrjiw0dj3k4py4d351pxj4app72wz9k93m2l3sy1asj"; - iosevka-ss16 = "0a66nmfq6nlidj3l589xgqka6vn7wbwhbhfi70wdycmvzzckda3f"; - iosevka-ss17 = "183l3cn9rwnadc9jwha174q47f2j6622md1zm2hxlszd5p9kp55k"; - iosevka-ss18 = "0c1nw9d0gcaa1n0ih6fda6q4kkr8g770f253mfhdfj9rpcd4vna3"; - sgr-iosevka = "1dlglnmicm99rjmrk4amx1s6lvfj2z6w08h1zig7z83yw082fhwd"; - sgr-iosevka-aile = "0q8hg8pfdhakxbv03c16ywlzlbvi9c3yc2k8w573d1fzd64xx5pi"; - sgr-iosevka-curly = "12qyy41fvf15vbi42hrc9gz143fb8k2mfrsn60l6gwqcjx5vvac3"; - sgr-iosevka-curly-slab = "1y95b4xh2zxwcahq55548bay9zk3ci52x1p4dsl52px312hb5c4g"; - sgr-iosevka-etoile = "0vdazfxzqpb6k0zfvifrwihl9argidwkwz5xbszjzvwph9fncwss"; - sgr-iosevka-fixed = "0mlxdjcp4a306wi2l97z3yim6wd28xmrgrbr5hh8659zmpl76idl"; - sgr-iosevka-fixed-curly = "0plxbry5fdrmhn6hcwsy975c9288i76hmdg5g17fhqaqfv564wvb"; - sgr-iosevka-fixed-curly-slab = "045hal14gpfkhpziabw9m1g26llrgnbxknkd8d39v2v77d9h5dlg"; - sgr-iosevka-fixed-slab = "1whrj3rkmyprp4k6xqdy16cw3vdnjafj9cmz5xyi8ybfinj2056c"; - sgr-iosevka-fixed-ss01 = "1cm6h0ih98dpryj1xfy9c0qwn3li2qp2a4pjkwrij8jlb9yyy5bd"; - sgr-iosevka-fixed-ss02 = "0qx0sr8bjc79d516qz11v3cpg120yb03zpbfpyv93r2h16i1k1g6"; - sgr-iosevka-fixed-ss03 = "0kvzgxf8j8rcbp2l1ma64kzybgkvjylb88sbwd023ani0n1f6cbw"; - sgr-iosevka-fixed-ss04 = "1p3dcpwwjf75vlz6hjdzrwih3zchzpq6swwwwdh870y5f4wa5apy"; - sgr-iosevka-fixed-ss05 = "1my8z8085prpsy93n6bnjfslpd23lngh1iaiba1az78cd1lz65cg"; - sgr-iosevka-fixed-ss06 = "0fqxim4rav68ag06l76x4g0f2235svj8c178nffviz9zffdlk411"; - sgr-iosevka-fixed-ss07 = "037xsrg6vcqz9mw8sfcmbw43lzjvfhdbavqsf29kw9xn34nq1bwd"; - sgr-iosevka-fixed-ss08 = "06jhjisd9wphc3sgp2ai42klfbclnaya5bl3b2dkd8qzadws5w90"; - sgr-iosevka-fixed-ss09 = "1k7wz9rgb7y3ni0yvzfsynni3z7bcwb2rbr1bshx6pj04ifwss31"; - sgr-iosevka-fixed-ss10 = "1vx0120xyq0qdzykvffymmkfbdpa4qh6i42n41mbz5r7ga94cgsy"; - sgr-iosevka-fixed-ss11 = "1c0b9w8n2k97f2pc1n9sz2h371256f1yhi9xb065y7cza8av7dxd"; - sgr-iosevka-fixed-ss12 = "13yvnilwhm1g9h85m928ibpkkv2rj9ma6hbws9xxpykirx9310c1"; - sgr-iosevka-fixed-ss13 = "06gzs2hkzisfn00rc8l0brj2j47yarlq9misarrxmv27fk0qpjk3"; - sgr-iosevka-fixed-ss14 = "0pxhzvlyk18s63c6z8iqm5w2casbhx22g41b65chqw8sg6bvaxmf"; - sgr-iosevka-fixed-ss15 = "1glg7gzh9kgk58mdnc1p3ynqcynv5r8mwkqgaa9bjmm8bz3fzb02"; - sgr-iosevka-fixed-ss16 = "02pb9h18ljmyrnkv959mfnd47wzrhp017m3q60f04v11nwxrgmk2"; - sgr-iosevka-fixed-ss17 = "01m0rw46jb5a2wik08yv5lb77c3d9z4ii16hyn3dmmn6g8zd7pij"; - sgr-iosevka-fixed-ss18 = "1pfp0z7madsqp53mn0fqyy5gzw74vcn3xhxh0cikll2kc6f7hpfd"; - sgr-iosevka-slab = "13g829fapi5kxl3v52fqs9h6q0qgbb4b5737r3fsfwjfhgll77jh"; - sgr-iosevka-ss01 = "1cppwpkrzg9mk790sq0i1hd5nxm8i8ga8pm7xbbjp3zggn7mgam4"; - sgr-iosevka-ss02 = "1il8m3i5p0mbmbnjn68ilbfz1w7cah0q0zhyzf4pn001kk6bdz3d"; - sgr-iosevka-ss03 = "0ca37wdygw2vgl024ds564646f09xmblbhwv1xwnvqbycl8vj86l"; - sgr-iosevka-ss04 = "1bqmwf3k5wf2iy5ylmfikqd0akk9b26r890c05pbiy2xv8hq51xw"; - sgr-iosevka-ss05 = "0rf048x9h3b9nl1n87d66m6fvbw2dlc2shq3h87ipnra7v4iqrbc"; - sgr-iosevka-ss06 = "0bcj47j2y91qjyk0h8whb0hrwsappsp16prvldf20cp44qmrk0n0"; - sgr-iosevka-ss07 = "08ikzyi6zq82vq5b228jlfkac345qpr6pzwvmxgk46pm40y7slzs"; - sgr-iosevka-ss08 = "0z197i1c5z6q45xpc94q47pqsmkzrjgrcpkxj7z9h6vpn241rcbj"; - sgr-iosevka-ss09 = "1xbidm26r51q629lridd2gl79lcmg9v6f6v67y064mn89iwpp0dc"; - sgr-iosevka-ss10 = "0nczij6kmshh73pw19rjwms73inm84dmxv7r7gwzfyfk3lbbcj9a"; - sgr-iosevka-ss11 = "09jng5m8a10c1p8vabjm3bqmfmjw21pbghx5ck9w4bma84cbijvq"; - sgr-iosevka-ss12 = "0p629lbkg6ixwzq12vpnryjsdpcvv8cqxan8avy3xg0p62pxw018"; - sgr-iosevka-ss13 = "1i0l6qhsb21ix7yaa0y2m396i86r5811xdjsfw2r8g1yp8g3h4kw"; - sgr-iosevka-ss14 = "04y4rq6v0dr2ydd9x4arcn911vv7f72slv2r0035aq0b0n02q401"; - sgr-iosevka-ss15 = "0fwnxmhc2mijfzhfs9dra1npfpywdg77nmq6sw2mav6bwj29hbyb"; - sgr-iosevka-ss16 = "01x3qb0s9dilsf3hzvybfrdl4fclx7j63y8jdnmrpnr6pvqx98gk"; - sgr-iosevka-ss17 = "18wfpvsyyvw3lq7v8r63gzkbqda7p9f164iryf7alpamdcm16jr3"; - sgr-iosevka-ss18 = "0mzy21qwmzz0kcncnabzx699b68qs4ycyprl2bn3yg06pclpvhcs"; - sgr-iosevka-term = "1k5n3k3x0y607q0vd70plms3jnv8x3svrwn9wgvlijrwa11n41mf"; - sgr-iosevka-term-curly = "0rj7h5miiri26q1kgj9m2h75ix9q3jq4m2js98wszn2inn94aggv"; - sgr-iosevka-term-curly-slab = "18rq47yf9wmlx5d327himmr64kslpxzkj8wjwk91ps83bi4gjm3z"; - sgr-iosevka-term-slab = "03asydj05vchzvphl82v74ydzvagplf2484r0mjgmdd5h02qp53r"; - sgr-iosevka-term-ss01 = "1jznjiljznr6jm1b9kfal5ri0cm949b4bhsvadgha4qk0f0r8him"; - sgr-iosevka-term-ss02 = "1pam3w1x2i0rxhdi4f6cd49b1vpg94qzzv1fqpdshfaws4qyn226"; - sgr-iosevka-term-ss03 = "1rrdja2dpbwg127pnz92qq50d91nvzikmf810db3dbmkv1qrqz54"; - sgr-iosevka-term-ss04 = "0wgyyri1darx1yij8s16qziwqjgl8kaby888s8vgaj586wr1kjbx"; - sgr-iosevka-term-ss05 = "0yhg0nrxsknkf7nyxdvz58vjin2r4z253786x86ilqssijwgsddf"; - sgr-iosevka-term-ss06 = "158zydfnjkzpkaslhjdq6ci5xgbhjvvi8wns3z0lw123rwd8g5k9"; - sgr-iosevka-term-ss07 = "1hggj50b26gamm4gvcpk8cqb4ppr5k0996vd1jj6s736i96q526a"; - sgr-iosevka-term-ss08 = "16ka95n7m3385pdq5v21s42138vgihn31vn604w34w1qak9waxr6"; - sgr-iosevka-term-ss09 = "0s85afqk168qmgl6a6czbk9amzryajig2vznqqa4gh871ikjd9cp"; - sgr-iosevka-term-ss10 = "1771952mj36r34zadawcvw74rfnjz82l4rz6gj5wiv76pv363idj"; - sgr-iosevka-term-ss11 = "1brwab2y13acirsnb0nc3pmbx5fs1rbn8sqz36vwgd0yg7ixskr3"; - sgr-iosevka-term-ss12 = "08v1gcl5smf1gqhqij7qbcz504x19bs1f8wmh5xks1xv7xpajs26"; - sgr-iosevka-term-ss13 = "0pqyvjaz89pgbnxfd6n7lspb8n0y5gr0rd1g5k8i9j57ilhsdcb2"; - sgr-iosevka-term-ss14 = "09h6l6gwn7rlwldgjyznjzq0wz31lkw1bnirsamh9nbicsmcgdxs"; - sgr-iosevka-term-ss15 = "0sj28ynxwri9sspqfjm5vj9v14lz0nqsip9a7wakyxxrqr7qnz97"; - sgr-iosevka-term-ss16 = "09h7r28nmc881ms17dz557m8blpj6jmvf42s3pjbzwc50d6fykn2"; - sgr-iosevka-term-ss17 = "0nkksb99g6ciqr46cyk8xmlij7srbx8fxs4i0fng1qkm6jhfnpky"; - sgr-iosevka-term-ss18 = "0spd16nn9lbcxyv091xkgj9c7i6hgqf4qg6bplhmf6dhxhj6kchj"; + iosevka = "1gn59969vxl83jv3zzcbfsl54gph693p0bz70dkqfh0vxby5dl7y"; + iosevka-aile = "0vqlbbnc5ybcbxn48svcf689mqhwf4slv72b8vvcjjvpyppmrdf9"; + iosevka-curly = "1w86x4ixsh493idm8ab0awk15h01d98w8dcvqa6vmc2d98bm0zhr"; + iosevka-curly-slab = "0bcq5zmgvfdz0bc73hrvnbn3rk5s10ryy35g655whqqx2wn8rk5a"; + iosevka-etoile = "0s3295m5gflg9kq7lz49b1vb5ssdg31mkcvzq0w6c1v43sr9c3j7"; + iosevka-slab = "0qydc6s9y896lfs867w7pqq352qwxbkspxz880fanpg66a4mb78f"; + iosevka-ss01 = "135bjfpjvyqbylf1a0mbx6zfhxdipbfxn6kvdzbylcvaxmlkbmk7"; + iosevka-ss02 = "00czg6i97qdp4460yis2khhsk6p8pws3d4s9cw3s23kaxbh3cafl"; + iosevka-ss03 = "1wpifmkrf8vxsg1fz7mkafskhcdbiwm0j34qcyc8hxyy9g5xy0pf"; + iosevka-ss04 = "0wrzzx5jwlmkw0alv55gikr0qwl2aqia3jpixbr2pmp8qj78asai"; + iosevka-ss05 = "01sxgqhmxs9zra5gjcqkj8rkflr1p83jlnhqc4davd4h4pgdwqsx"; + iosevka-ss06 = "1nzjnnqz6p0by2vl0f052m7dqvfcjx62clfdybc3k2b6vd8p91pz"; + iosevka-ss07 = "1ib52g4gnj950b24y550wilip4311slsq001smf06bk64v0xyzb9"; + iosevka-ss08 = "1kv22lnm8k9s8d39swny9ci8ybqbplqmgvfb4sh9gq8ikwbada7c"; + iosevka-ss09 = "1q0yablkn1v94w204flkxpwf4zgzzrch1vk0x4ijcyw7bjwv2wlb"; + iosevka-ss10 = "0s6fgq1mwfd56fx9iggisa87warpy8kwlnzrp52wadc6wml6pwp1"; + iosevka-ss11 = "0iry12x9wmv8w6b00r0g0vnxjc4y40i6b68ml85qwp9xwrrbg4qg"; + iosevka-ss12 = "1ry8b32l6bzas8h1lx7ymvf5c5hyz5sppqf4ygdxy6hcc6bqcmpf"; + iosevka-ss13 = "1id288j7d8ppxcvgd0ylrc3rncnypg094ai8s539gxhlcfni0xn7"; + iosevka-ss14 = "0ggfswcdy0kl7y6b1pqi0fx1lppljrd7g5mk94zylqg0p1qz8jg2"; + iosevka-ss15 = "11zm07lna8pipzdm2xlxsq3ps7c85vv913wwbm01l0h7g5n6cr4h"; + iosevka-ss16 = "13ggwcpdh6cx07hwi801n00mmm440xxr6lylgg013sbf7iasry18"; + iosevka-ss17 = "0c5ixksqzshafg627fgsq5pwn79bmxg4n5q983halvwfwl0bnzbn"; + iosevka-ss18 = "09qfm54rqixd5alzpx6kdsy1w9693ciij3f3kr1150b4rnd6ilc7"; + sgr-iosevka = "0ab0dpryalq62j1zbayx8cjzl4bhr9gzm8x8yk4kbvqaf6rzjf4h"; + sgr-iosevka-aile = "15hd88zbx76qc1imwxpgi5xnn7bg18fsvi3mhva9xsssqlah7lws"; + sgr-iosevka-curly = "0a9jm2brda6x0g3rpvms4whb33cmk7fs9fphx1nf2lr2ydlhbz81"; + sgr-iosevka-curly-slab = "00yvzbs5dri7hrazgfppb1zw0d72krhh789kkad00nhyx9ijls5z"; + sgr-iosevka-etoile = "1i7ahs88xbfzyzhbg1vkp9r6mzfabpgnbihzbdbc9xffhd9m8b69"; + sgr-iosevka-fixed = "05dy6b64ssar4lm6aw6bn6l43ljx8zca93q8b0hrgjgp5rf83hia"; + sgr-iosevka-fixed-curly = "1nl2pm785n0rc3jyadclavy56c3k64yaplgsr3yyj5ic2clfg896"; + sgr-iosevka-fixed-curly-slab = "1gkhxwvwqszfiqphfbb1ijlyqbihrwj1n6n67wzkll464wj4il6k"; + sgr-iosevka-fixed-slab = "005y0zixp3g00i12jq3x6ahgfjbbxp9wz65mmbxdrggih34ws5r1"; + sgr-iosevka-fixed-ss01 = "0z48q8ry6xyz9b0bbfy65qi6plffv4920wy473inidymj3lmy18s"; + sgr-iosevka-fixed-ss02 = "0srq607x6nmhn9b0b7j33gfn57x6n32zl3prxzkvsc9z1dmg8nm8"; + sgr-iosevka-fixed-ss03 = "1sxn9jkmhk7qp42lli075m05lz38a1rjnxkg5j3qdrxdha2alqsf"; + sgr-iosevka-fixed-ss04 = "0h89vl5qym80g48idp81ii6ag3542s042r0hyda5ddkxw2alm38j"; + sgr-iosevka-fixed-ss05 = "0b5c6sagz0z7sxsk16dwf8kvmxzjzn9n0aps2f665ap9nf2bvqny"; + sgr-iosevka-fixed-ss06 = "11k1jk7z5ri1q49jj5ds5blbwrvvqk0fskc1jwjxx0jw5qhm1qxs"; + sgr-iosevka-fixed-ss07 = "0yfh7726z2xa6lrlm4nc04syqh32im1ck8c191sv2340c708vg2d"; + sgr-iosevka-fixed-ss08 = "0g9iig16jn39x46xz5h97k1rg07alpx272fv4aqpkibx7d4kpk4a"; + sgr-iosevka-fixed-ss09 = "03fjsfyhgaxmnc0b2qz6a3pk7w0cpdfdqiqamqcxz6iqfbaqlk6l"; + sgr-iosevka-fixed-ss10 = "1jz8qq259h6k2bqqhpq161sqgpcnqxm56rrk0kjcw6vgrschbiqg"; + sgr-iosevka-fixed-ss11 = "14zj34cpkwb63gni23ls5icrkzxq16h09ggdgismxbbrymirw1yb"; + sgr-iosevka-fixed-ss12 = "15hfkabmxb53f9ljwknxyr91h1awdmaa24kxq1hmbgwz7g4az7yr"; + sgr-iosevka-fixed-ss13 = "1xiwaqjbhkj1hxqsp99c5skynzhanbp5mhlw04n006ay1kq9zjxs"; + sgr-iosevka-fixed-ss14 = "0zapvxk4d8dn0jadm8ilvaqzlasc9g79v18y807zadcadhf7xmz3"; + sgr-iosevka-fixed-ss15 = "19r7kdgpn1vqmhaj5dxhccfxyzpdcaxgdmic2nzhjcjkxg09mvs7"; + sgr-iosevka-fixed-ss16 = "1na9bmgw29q62lbc5fjlbkjivncq71w3n6c02prcmpyn0xnlpqzc"; + sgr-iosevka-fixed-ss17 = "1zabrx1bxr0pb1cbdp9vdzahjvwpignyp5qb466qiy8l6pyhx1sh"; + sgr-iosevka-fixed-ss18 = "037srmxnq5jzgj2yf6l04msyvzp54sklxkjda2ibifywrac7fkk4"; + sgr-iosevka-slab = "1fwjscd1r7f8k43m55svcyz38y4qlr329nmr2ji5h9cg08shi1gf"; + sgr-iosevka-ss01 = "19c4cdpm8a543cj4wfakvhfmnbqvr5hp3c284w01z40wzx35zc2y"; + sgr-iosevka-ss02 = "0rd79vrfgrmml9y6dc8k1b6flihhc1fgrab2rja4640qjn7ak8sj"; + sgr-iosevka-ss03 = "18clr1swv0zkvwza46a3rl0z95cnvh7knidwk87wi1a4i5144dbp"; + sgr-iosevka-ss04 = "1b02b0dvqpiw02b8g82pgk6a7ywj4wml00hkc26j5k0vmw7dxbvj"; + sgr-iosevka-ss05 = "1z92ki8hq29qgnfpy65vnbrfhb17vb4wxa7ga0051vdyc6kbkip0"; + sgr-iosevka-ss06 = "08nbrrvxdlf82112x9vd157sqvppkbfz21wzisyva6kzjips4d1v"; + sgr-iosevka-ss07 = "13ghjry05y87z2i9kkrwf46gjzbhmhx32vqf8cbjnwr2scb3d2sd"; + sgr-iosevka-ss08 = "09m9wraz90lc64jdyc8wjdmqdcll44v9j4yr2hw494c27883bk73"; + sgr-iosevka-ss09 = "1ada6dykasd7mb8haari9bwzl75bfp2y0c177vk2lc869f845l5l"; + sgr-iosevka-ss10 = "15c4h8plvy9mmjz8rv8jjhlby3g0x674il01gc54q70sv4g1lj2h"; + sgr-iosevka-ss11 = "1d1hrxj7vv8lhxsqjfn9wz12wsnhv5accc06dpra3sraqajilxga"; + sgr-iosevka-ss12 = "0s75j0wrg2j52v0irlamsqf46izri58wls1fjs3p6ckjasn0jlb7"; + sgr-iosevka-ss13 = "1nq6bjf6v87vni7s63nayx6dr01r219gxni0md4xbsqf7in31ncm"; + sgr-iosevka-ss14 = "09kphmfr1yxa7whlzni1nbmyhrcpnbaqqzmbr1n18dahlq8wf4hv"; + sgr-iosevka-ss15 = "0nnap51bhhbbdljxpcsbg7kzjb6a6psdfr06jf8z969q56288gmr"; + sgr-iosevka-ss16 = "0rdvsrqfkj6wbmmxf0xgc9pjlc43n6y433ziflgv71r7zp25rbch"; + sgr-iosevka-ss17 = "1ylndvsyq78n0wp3dnpj6ili7jagfa2hbr019dnnm485mw2lf34a"; + sgr-iosevka-ss18 = "0mkc63kz9xqxqzzygbz4r462dlrcm0s2x975r33q1knz1fag43gm"; + sgr-iosevka-term = "1f7aammqiwjvf49r7aa6ivbm539imb2vh51mqml9kagxyaz134bb"; + sgr-iosevka-term-curly = "031i5rjwczghxcsks17hbwzhyfkalydfj255f7f15pq3mphj2svq"; + sgr-iosevka-term-curly-slab = "1srjdhp667nbjrraxqqc3653zmw8ji33nnsvfqxmrs7jy1w16mic"; + sgr-iosevka-term-slab = "0grhsha5f88h7326wy7fh9frk9xx28zbsk75rz6xxlh4qb3lqqx3"; + sgr-iosevka-term-ss01 = "1c68h9zav5j76ylvw5yddscs6xk5i9fck8b7zphhqljyd5pk3i89"; + sgr-iosevka-term-ss02 = "0kccl4i7wykaf4c234jh8qd1rxkc920533wn163xfpmb820c1lnw"; + sgr-iosevka-term-ss03 = "1gl89w29mwir92s1zcvnvqg7apr1cr1fp56si1xk8i2smg9al540"; + sgr-iosevka-term-ss04 = "093wxxw6v3sbds77izlsshn0yr8slchns2j858vjw2cm5nv14ps3"; + sgr-iosevka-term-ss05 = "1b29jabdb2ca0yrs54x1ahx5fqz51va5khd3mlwqrbrjbz5hzfdb"; + sgr-iosevka-term-ss06 = "1i4nrs5vh02xs1gh8i2c89gpzskxgrbfvgvna18d909mxqkwcj23"; + sgr-iosevka-term-ss07 = "04xsxb7gch3srq86p23yvbn2l4pqg35fvg0ydsnnx7zxck711yh0"; + sgr-iosevka-term-ss08 = "19zcyqb45fyxiwzpf6fcnbmsp1sxw6axxyl21ffc2qnamkbnh0cq"; + sgr-iosevka-term-ss09 = "0z2li5gmyp4l8s5fwbcayg4fmdm6ilxa13mwm29nnrq3qfxs7jf5"; + sgr-iosevka-term-ss10 = "08hl6ivvy5yycd8nrqk3q0c1lciw1dacsdccq6p3wnhraj4jvgpg"; + sgr-iosevka-term-ss11 = "1mzkvqs0pszaizhlbs81ryspjq8mxnriqsg7ci5f1a5wfv5x4m0w"; + sgr-iosevka-term-ss12 = "0nwb0jv6pq5dqzm9i0wy2ixqhwkc46z6735swy4kl08s6ywnby3f"; + sgr-iosevka-term-ss13 = "0k2dbrn64i52rbv0rv9j41d20iqvmbsggmi75vnmvmyahm00agmn"; + sgr-iosevka-term-ss14 = "0niq6iy6snd52l2qv248r5i4kbb0jrfnmscmc8hla04r43pfw9yi"; + sgr-iosevka-term-ss15 = "05j96kmc0n88v1c0ygiypma4ddxnbvxmjj2yp6h76xzyhxvdl69l"; + sgr-iosevka-term-ss16 = "1x9ipw7m42yhd33dxm5qzzqimszklcav26rqdmzam8m6slg6cwg9"; + sgr-iosevka-term-ss17 = "0y9nw69jp8mnmbxhly16d8dnwpjgpgllimr7icqlbc9dr2nzzhm9"; + sgr-iosevka-term-ss18 = "0sh3vhv3p42fgx4z5gg9b3v4nynnjxnn5fjzyiv044957djs4rvb"; } diff --git a/pkgs/data/fonts/kode-mono/default.nix b/pkgs/data/fonts/kode-mono/default.nix new file mode 100644 index 0000000000000..b68851c91dff6 --- /dev/null +++ b/pkgs/data/fonts/kode-mono/default.nix @@ -0,0 +1,28 @@ +{ lib, stdenvNoCC, fetchzip }: + +stdenvNoCC.mkDerivation (finalAttrs: { + pname = "kode-mono"; + version = "1.017"; + + src = fetchzip { + url = "https://github.com/isaozler/kode-mono/releases/download/${finalAttrs.version}/kode-mono-fonts.zip"; + hash = "sha256-5bTciBQhWNUokOP3YzAwrvp7jeyiF4JMdJDX+6NXvLU="; + stripRoot = false; + }; + + installPhase = '' + runHook preInstall + install -Dm644 kode-mono-fonts/fonts/ttf/*.ttf -t $out/share/fonts/truetype/ + install -Dm644 kode-mono-fonts/fonts/variable/*.ttf -t $out/share/fonts/truetype/ + runHook postInstall + ''; + + meta = with lib; { + description = "A custom-designed typeface explicitly created for the developer community"; + homepage = "https://kodemono.com/"; + changelog = "https://github.com/isaozler/kode-mono/blob/main/CHANGELOG.md"; + license = licenses.ofl; + maintainers = [ maintainers.isaozler ]; + platforms = platforms.all; + }; +}) diff --git a/pkgs/data/fonts/nerdfonts/shas.nix b/pkgs/data/fonts/nerdfonts/shas.nix index 49b57a9d5465a..9e393f8e399c5 100644 --- a/pkgs/data/fonts/nerdfonts/shas.nix +++ b/pkgs/data/fonts/nerdfonts/shas.nix @@ -1,56 +1,56 @@ { - "3270" = "12a9zi38mi0ba581p42h0kdwrjh7jacq2z85ghn318a20m0sgh5l"; - "Agave" = "17phx041dnn4bpmcqzwkmklh34kxafzjd0vfzkw5p6yblibnwzx8"; - "AnonymousPro" = "1jpl6id8472bx74m90rry2gmxm365mcqrka6c1kk6nc87k38rz80"; - "Arimo" = "14s3g3dl835bbzj52g7n4pm3c3hfhssm7rsqrprms2yknbffmbpc"; - "AurulentSansMono" = "0v49zig6f16a0g0pp4qng9scn452569lrlvr5svz2zx44yz8aji2"; - "BigBlueTerminal" = "10n1pg20brwprl6qxvcg20zwyvp7jaazxaz0n9724zxs9sjjkk7h"; - "BitstreamVeraSansMono" = "1sc959pw6vlp9qklria6iq36bakmh51p5z98qh6p926sd0ila656"; - "CascadiaCode" = "04jwlxzp2r82nhmhfav14wxygshr2gkl0s7lijc97p8z32fkygbq"; - "CodeNewRoman" = "0c5cn71mayabaiz3rnpszvg1p3i067a6f71kqjm38136livpq8ig"; - "ComicShannsMono" = "09a50xcac4asik7mb3mcpkf5sjaa6yssq2ky999pjkccpp0sk2hq"; - "Cousine" = "0azc7jfv8dkxz5874d9w7wx1033w8d6agzic6inp6gd3vxfpn949"; - "DaddyTimeMono" = "1pnx92g4wc6a9xs3qkckig24v5g897xz520hpprzbqxdqbdamg8w"; - "DejaVuSansMono" = "0abm1lprkr396dqg7hi54mdb5mgaqb0ld9k0a9v93h2gi7n6jd2l"; - "DroidSansMono" = "0hpqa3zcp3qygvm24zrhcp0rv28lgpqra72l15il9391c4rday7j"; - "FantasqueSansMono" = "0cwbwlmlw9ijh6nb2nip918qfwf2h7h4ra6z1xi6sfp3mkbrdm0j"; - "FiraCode" = "13n9xi7jsd2zn7nmgf7hz1d4blqxb0d0z6q36zscc6w1140m3a59"; - "FiraMono" = "1zlqxmdfy2pamfwz8n46jksxws19jlv6a1jyjg27cmcm6g2phlwr"; - "Go-Mono" = "1qyna6720s7ljijqw28dsc3xixpc1c603h7avaqraj7xbhx2bch0"; - "Gohu" = "08dsi6hwahc0d2f40p976anm2c07x2i7wbpcf27sm53f8q4yc07q"; - "Hack" = "18f196963sw6y9kpyixij6wxkzzay2pgz11xyy63k6wc54z2zmvp"; - "Hasklig" = "12yl427kbvj3s9nhzgn0q6pmj8jr0vh58xm7h2q3v0qfw51vdwih"; - "HeavyData" = "1752rbgawhwx5hbqwf1v3njl1n2fgbylkr45wrz3jxb4089nsmn8"; - "Hermit" = "05vi0dfg77a54z5m0nqcyzyz646r7r7nbxm76mwv4n4w9dr319h3"; - "iA-Writer" = "1v3zs49s5712z7mq7v06r325lk6q7syd6mqd45520ik35nskpyh3"; - "IBMPlexMono" = "0q6g551n1n6hihbaybydsks6v0hzw0izpmr5ncmiamcibdjw7nn8"; - "Inconsolata" = "1fpyasnsb7zq6k7kdhwz4jcnslz5fsmcn53gfspvznlnassm5fl4"; - "InconsolataGo" = "0kr2piwvfvplniq8sp64sw4p05mfycykc8i8pmb7vbs8ybgkgka1"; - "InconsolataLGC" = "025f1ixbvl7r0lk74ppmpfh2agq1hqjrn3vrzfh3skamwhy9dmsx"; - "Iosevka" = "1n699bs61zld312d0kgyp07c4ac7cgixwlfg9c30fyf33jibw8wh"; - "IosevkaTerm" = "06k8dcvqkah9bzlagmyl2lnwl0lm51f15f3v78l51p2rnlqmi0n6"; - "JetBrainsMono" = "0sj6ssdznxabxrvc7ar2rbf2fwadixjirk07xdk2vwyavgpyajf0"; - "Lekton" = "0j2jaz2w7nbs0c6awxqj79mqi6k058b58629r9ir8qhk7m5qmq7b"; - "LiberationMono" = "18mc7rjvzlcblf0is83ds9sjvyglc5gjf0nbqa6xgm0hcp0lbmzv"; - "Lilex" = "1kq56iws0cg6ayfmy21cs8l8496ryjsk3ayanbcyz962j913a7qh"; - "Meslo" = "04g6najk9ar19pkq4v033h2xhv2rr6yrbp2gw29kpwzigjfjrzsw"; - "Monofur" = "051ipzjngq2083xj3r99f5jfyshpsgw399rxspnzj4xz9n9803vl"; - "Monoid" = "17gqr74cc5b3dz09z974ig4w8blwkiyky43gpw7ak1l073w9v3vm"; - "Mononoki" = "0b91kncc6b14zigci05gv3hf4p88vd1xdis8x42zcjc6bjh8q64k"; - "MPlus" = "0l4ydmspdj2hfmmc686isnmjqhka3vpy9clljpmx9l7cqygqifxk"; - "NerdFontsSymbolsOnly" = "1rlv9kdakabkpjw12ji26xb42daj33zljfx3hhnffp8ky4vpxccd"; - "Noto" = "0slrz3f975bzkah4g446rlb1ai85c91i3g8ciqlifq48pp51jm9m"; - "OpenDyslexic" = "076ylnbbbwrxs8dm9w6bzs26jdc13s00l4qvyp699z4rgdzb9rgi"; - "Overpass" = "0nf67kizh11amj72yjqv6wm1zgfkvfvrknss56b1ljifp5sgyc6h"; - "ProFont" = "0bw3srnikbcyr7gkvr9pqx1i11z5wlr9bmfg2hia1wmbic73cbl4"; - "ProggyClean" = "1m6m4gyb9iz3dwr5lmn18ciwib92015i0mqdw5kb2wmfrz5s9kks"; - "RobotoMono" = "1qlss2xs8asg3cpdm2gxwzpaik8jhn1md8faficncphf9x9rdvzv"; - "ShareTechMono" = "1sadgp9zw31rk71xa56l4fqbr7iv4j2l7mp1bdykrzv4r94swdl2"; - "SourceCodePro" = "096wh4pq1s24i7xya0lqbr5z6ba9k4wr1229p9n7xkcf2hykgc9j"; - "SpaceMono" = "0fk54ijh0x43vhk46inwhn7rcn2jgkx836461cqn1xfp5vc9y1hb"; - "Terminus" = "0bxmvhzxd8vllwv2kjgp1j0iz5jhwwp9x1sjxwdsjv3pff3qm41j"; - "Tinos" = "08pk46z03x4nnkrbp96i16fhmvp0gvk87s2w8dj51863ay0k80yb"; - "Ubuntu" = "1gwndxsrp2289jgl1wkqyh5q236ax1835314igi0m3iq22vc07b5"; - "UbuntuMono" = "0qikbhm3qv745kwa4mbkjp17rp10pbvld2xmfn20x4lb33xpny16"; - "VictorMono" = "1hgqbyrqmjjbzdfxc38rf5mn7m424mchgqp9qs1cccc2qm6js05r"; + "3270" = "00cmrlx30jz3gd9c1cjw3ddhr82ngzwn1brwcr8l7fahxb7gvq7z"; + "Agave" = "0gnr12b5ah1xadm53fj5x0532kx8g6v5wc82c391d18h2azbllbm"; + "AnonymousPro" = "0lqmghnj33jfv8rn1cyvq50j27kc19n5lfjr2adwsy2qixk499p9"; + "Arimo" = "07v7m5m9vijdwwm0d63j67ciy2nlpkfy18s6q2d555n6yfs2yyb4"; + "AurulentSansMono" = "1ndrs7bl0lxfahnrv91y0vsbvs0p3ah56drsvz5r3qw7sr4ffr09"; + "BigBlueTerminal" = "0mms77748yc9qlzank48qqdc4as41zfkhbspv2scklz0n76v1f74"; + "BitstreamVeraSansMono" = "0wkg8r6bryv4q320hrc3x2c78n1jp44s99hmbwjjplzh1g0j5x49"; + "CascadiaCode" = "0bmzji880wbc3c4krw47kzf8mzb9abvv6wjybhynd1rjf31i27fj"; + "CodeNewRoman" = "0w5plvvwxxzmlz0ylah5an4j0mlbj292nqvfgj5v9p5kbw68qgrl"; + "ComicShannsMono" = "1ybxyn85ygm4ipg371b204mi6x7303yqriysiggb5bsfas2ymq6m"; + "Cousine" = "0bkwf3h6wy9n3ii9ii4s16951w65vz54yyrdwxngcmrwapcii9y5"; + "DaddyTimeMono" = "1w5n170l63hfxh1xclw3jpf8amj60br6py4yx12yhqanp2zg0shj"; + "DejaVuSansMono" = "1j22f5jnpmyli686r67c4c07g07ac78aq9wg8hy1vwblxfzdvq9f"; + "DroidSansMono" = "13r1sglgwf05swnbn0mha2gpdqammzlg0p6h7c33af1vr7n8cnca"; + "FantasqueSansMono" = "1k0p6gvas6mgwq0bbvpwbn3mm6yaaapgjqgk30fvpq9zvn4a26bf"; + "FiraCode" = "14vbb3w6il32kd8my75vvv786azm7sxmdpba9np0qjx4rs8xdhbn"; + "FiraMono" = "1iiz5cnhrb67793ww6pj5y5x9s1a5nlk9kqwbv92kxmbqakarlcb"; + "Go-Mono" = "0zdxyid1kw2prszhj69pqyrba6ywsxwb0ynnmwvqnc99bp0lx7pw"; + "Gohu" = "0bx4mayqm5rqgd5p3xqpwrqn7338yjcsa9a1vi2qx4gycbp94qh5"; + "Hack" = "1p8l53k6fzjbx7sjl05bq7xxnxmn7026sdgmyxqx4crmy18qxywk"; + "Hasklig" = "1fvzhfjd0xqmkc4wl3dpdigdq5ni2gz2x9ip7fmfz5y9ipnbyf36"; + "HeavyData" = "0w3zxdr9dmfk4k1m9n0fzn18kfgzq97bxf7i9xqfqikh3r1bpzjw"; + "Hermit" = "1cmhf1xinspa3fqx95h2z3qlbv2p90zba4chg9mpv46vz3dmmkki"; + "iA-Writer" = "10spld7a70phczw60chg7y21m8afz8vdrc9jklkrh045fhskqbh6"; + "IBMPlexMono" = "050a44156320yjb14l6ycfg2z7isk0qb57ds5s6ixla6hr0z4g4h"; + "Inconsolata" = "02rar6g3zbbpxxxz37v7d5qzafn59bhp04iv3wk16kqxy0havgx5"; + "InconsolataGo" = "0nx6j3v2fvhdw3ygmz65zwlj6zwrkpmf59wfxirpzkcqqsdh4zwl"; + "InconsolataLGC" = "00s2051fz3k6jnsfmnlqnd2cghr9sj2pddi5gpid1i5x006rig7a"; + "Iosevka" = "1byrmfbsqi06fsy958364jy694dnm7a7pcjsv64w6mwfsi5vjn1r"; + "IosevkaTerm" = "1k65jfa0c7c6pvns7vfcxcfc3i1qcr6wg16qafbp9zggabbvl7aa"; + "JetBrainsMono" = "0mbzvfl36a6mgb2dnjf8n3kkm28sz0xhv7s5lww141wpgj5jb4a9"; + "Lekton" = "0xnqdjr8hawcn1na07f06bxqlvrxbv0n4mmgnivl0clib0nna566"; + "LiberationMono" = "1mh0h85nqlh78xngy6wz354a33nk0gghic18pf0a38h3ryssb44c"; + "Lilex" = "032gymxaijinbsbbyr0jhqdyr5vhvs83208cirdwx4yjgir32bj9"; + "Meslo" = "0awd09634biwjxxzzh4r3a5w2n0y0bybc2yh98yplw096n5k4nyv"; + "Monofur" = "1z49di4zn8yxpwgs876n30mjisjir9gax08vs1i8sll4kdms5znw"; + "Monoid" = "09ynmda4chlv69aipp33h3h5c3imbqqmh1iwnggvim36ga1h49lm"; + "Mononoki" = "15pkg8s18xxwkp7qhvnd473f854n4m9340kvgs2r7y5xgzagcmrf"; + "MPlus" = "0kj3kjhi4v9w2izsgx6sfn0g8xi6p5qmsgbpip9nff7n2qlfg02s"; + "NerdFontsSymbolsOnly" = "1yschcw29kbddin7cvbc19wchwyarg0p8sy4265j306kafcakzgd"; + "Noto" = "0sdzd1r8wjl980vq19q6067m54fnrhkdj46q9zi27s9nnffcxwdr"; + "OpenDyslexic" = "19fsq8z06iz89a12kks3j51vn9r0fzq51wl14284g0ffbf4ylzk8"; + "Overpass" = "0qc66qqjshlxb9i28j48ii3wcaiy8dq8zdx9zvp6a3wbj13r9wa4"; + "ProFont" = "18743axd1rcpyk92a4hq3ymxz143601h8zi466d2j1x1vxhk852f"; + "ProggyClean" = "17l9c02zfh8ilgyrd91jzibmmpw44qagbvzr9s1dacllkg0d4sbj"; + "RobotoMono" = "05z6ccnrhrn51yip6d37jjyilp8i2mr1afnxl4kam21kgkcmz3bv"; + "ShareTechMono" = "15j2dfnikq5jfcvfgmrpnycbb3mfj6mq8q3dqnimba5hpdlrd95a"; + "SourceCodePro" = "0qzqwaiig2988159byirz5wnn2qj9qprmlbjrr4ybckis12ipkp2"; + "SpaceMono" = "08ys3zl33fnlclcai9d8w3iadvrdnp2z14rz0bjk78syzy4nqj3p"; + "Terminus" = "1jj5xbf9mr772wn5l1qbal5hn6cixwin5qhswa8f9zr36vlh86ss"; + "Tinos" = "0w9w3f4vrvcm59nhzvj0wchx6cdqk8akb77ghwc70pwd35s2xd3j"; + "Ubuntu" = "02k4x2gvbbqsmxmjrf9x9pwwja7xhxs9bi4ryp6w8x2mml82yf2h"; + "UbuntuMono" = "0vw41mkiqy6yv929zabs6nhms9x0nzrkvmpirvvmnzj7f70gy73p"; + "VictorMono" = "006a8p809w6337395lkghlz26qslhcglhg383ic2gxgvng2vcyp0"; } diff --git a/pkgs/data/fonts/nerdfonts/version.nix b/pkgs/data/fonts/nerdfonts/version.nix index f6fd00b745561..1b137dcca25b1 100644 --- a/pkgs/data/fonts/nerdfonts/version.nix +++ b/pkgs/data/fonts/nerdfonts/version.nix @@ -1 +1 @@ -"3.0.1" +"3.0.2" diff --git a/pkgs/data/fonts/sarasa-gothic/default.nix b/pkgs/data/fonts/sarasa-gothic/default.nix index 5511b921c0a6a..9f5cabe79881b 100644 --- a/pkgs/data/fonts/sarasa-gothic/default.nix +++ b/pkgs/data/fonts/sarasa-gothic/default.nix @@ -2,13 +2,13 @@ stdenvNoCC.mkDerivation rec { pname = "sarasa-gothic"; - version = "0.40.7"; + version = "0.41.0"; src = fetchurl { # Use the 'ttc' files here for a smaller closure size. # (Using 'ttf' files gives a closure size about 15x larger, as of November 2021.) url = "https://github.com/be5invis/Sarasa-Gothic/releases/download/v${version}/sarasa-gothic-ttc-${version}.7z"; - hash = "sha256-muxmoTfAZWLhPp4rx91PDnYogBGHuD4esYjE2kZiOAY="; + hash = "sha256-3WcBuBTm3ASuCvLh+2R/idLKBjCTnk4qIRaOo590ugU="; }; sourceRoot = "."; diff --git a/pkgs/data/fonts/spleen/default.nix b/pkgs/data/fonts/spleen/default.nix index 911fbc69b55d9..55b88c9613929 100644 --- a/pkgs/data/fonts/spleen/default.nix +++ b/pkgs/data/fonts/spleen/default.nix @@ -2,11 +2,11 @@ stdenvNoCC.mkDerivation rec { pname = "spleen"; - version = "1.9.3"; + version = "2.0.0"; src = fetchurl { url = "https://github.com/fcambus/spleen/releases/download/${version}/spleen-${version}.tar.gz"; - hash = "sha256-t60e2wKl3a0RfKlPAm64RQtRUE0ugbw6A4deEtTnayU="; + hash = "sha256-d4d4s13UhwG4A9skemrIdZFUzl/Dq9XMC225ikS6Wgw="; }; nativeBuildInputs = [ xorg.mkfontscale ]; diff --git a/pkgs/data/fonts/unifont/default.nix b/pkgs/data/fonts/unifont/default.nix index 1c38f91b0b076..dda2b3f5bcb4a 100644 --- a/pkgs/data/fonts/unifont/default.nix +++ b/pkgs/data/fonts/unifont/default.nix @@ -4,16 +4,16 @@ stdenv.mkDerivation rec { pname = "unifont"; - version = "15.0.02"; + version = "15.0.04"; ttf = fetchurl { url = "mirror://gnu/unifont/${pname}-${version}/${pname}-${version}.ttf"; - hash = "sha256-DvWkQo+ZYWwoCCA69iyDmQtS/Qxwg7b2spLPqiSauL4="; + hash = "sha256-kkSbEvWBrvcnBgHDdKJjpSYF6BJDEwmYSxVQbPkQ6so="; }; pcf = fetchurl { url = "mirror://gnu/unifont/${pname}-${version}/${pname}-${version}.pcf.gz"; - hash = "sha256-01yEB9We5MkeCF6uva0SDTpt+4Ln2TaNh6jkCS66PUE="; + hash = "sha256-rdzJuOkXYojgm5VfpshtJuCJYM0/iS+HnWMXEDsLQPg="; }; nativeBuildInputs = [ libfaketime xorg.fonttosfnt xorg.mkfontscale ]; diff --git a/pkgs/data/fonts/unifont_upper/default.nix b/pkgs/data/fonts/unifont_upper/default.nix index 31066382747cd..892ed5be24004 100644 --- a/pkgs/data/fonts/unifont_upper/default.nix +++ b/pkgs/data/fonts/unifont_upper/default.nix @@ -2,11 +2,11 @@ stdenvNoCC.mkDerivation rec { pname = "unifont_upper"; - version = "15.0.02"; + version = "15.0.04"; src = fetchurl { url = "mirror://gnu/unifont/unifont-${version}/${pname}-${version}.ttf"; - hash = "sha256-Ikd2VotAvktUd083vzZZFLzmXtZi4EGYRJ9eKP4yveE="; + hash = "sha256-7iRcyKfGpv2rjVLPRNchxpXwj0KA5jlgDnCfG7byLLI="; }; dontUnpack = true; diff --git a/pkgs/data/fonts/whatsapp-emoji/default.nix b/pkgs/data/fonts/whatsapp-emoji/default.nix index b118691fee1d4..5e34282891b94 100644 --- a/pkgs/data/fonts/whatsapp-emoji/default.nix +++ b/pkgs/data/fonts/whatsapp-emoji/default.nix @@ -11,13 +11,13 @@ stdenvNoCC.mkDerivation rec { pname = "whatsapp-emoji-linux"; - version = "2.22.8.79-1"; + version = "2.23.2.72-1"; src = fetchFromGitHub { rev = "refs/tags/${version}"; owner = "dmlls"; repo = "whatsapp-emoji-linux"; - hash = "sha256-AYdyNZYskBNT3v2wl+M0BAYi5piwmrVIDfucSZ3nfTE="; + hash = "sha256-dwX+y8jCpR+SyiH13Os9VeXLDwmAYB7ARW2lAMl/7RE="; }; makeFlags = [ diff --git a/pkgs/data/icons/kora-icon-theme/default.nix b/pkgs/data/icons/kora-icon-theme/default.nix index 880568fe4ff86..a2c705c8f3da2 100644 --- a/pkgs/data/icons/kora-icon-theme/default.nix +++ b/pkgs/data/icons/kora-icon-theme/default.nix @@ -10,13 +10,13 @@ stdenvNoCC.mkDerivation rec { pname = "kora-icon-theme"; - version = "1.5.6"; + version = "1.5.7"; src = fetchFromGitHub { owner = "bikass"; repo = "kora"; rev = "v${version}"; - sha256 = "sha256-vAeml+upESUVlJ95Rm0+vlZ+NQZWEZl00scDkb3W7Yo="; + sha256 = "sha256-VAlfrUWgxcG17ZTlA357gengXTilwuZOBscIzadAsaU="; }; nativeBuildInputs = [ diff --git a/pkgs/data/icons/papirus-icon-theme/default.nix b/pkgs/data/icons/papirus-icon-theme/default.nix index b84b16b243355..0548ac07cedb1 100644 --- a/pkgs/data/icons/papirus-icon-theme/default.nix +++ b/pkgs/data/icons/papirus-icon-theme/default.nix @@ -2,13 +2,13 @@ stdenvNoCC.mkDerivation rec { pname = "papirus-icon-theme"; - version = "20230301"; + version = "20230601"; src = fetchFromGitHub { owner = "PapirusDevelopmentTeam"; repo = pname; rev = version; - sha256 = "sha256-iIvynt8Qg9PmR2q7JsLtRlYxfHGaShMD8kbbPL89DzE="; + sha256 = "sha256-p47Vt1nR94bXtpWjNaIWJNKbdgFFMc0qCBeh2V98CJg="; }; nativeBuildInputs = [ gtk3 papirus-folders ]; diff --git a/pkgs/data/misc/cacert/default.nix b/pkgs/data/misc/cacert/default.nix index baa714576b62c..6fd4a6641cec5 100644 --- a/pkgs/data/misc/cacert/default.nix +++ b/pkgs/data/misc/cacert/default.nix @@ -30,7 +30,7 @@ let ])); extraCertificatesBundle = writeText "cacert-extra-certificates-bundle.crt" (lib.concatStringsSep "\n\n" extraCertificateStrings); - srcVersion = "3.89.1"; + srcVersion = "3.90"; version = if nssOverride != null then nssOverride.version else srcVersion; meta = with lib; { homepage = "https://curl.haxx.se/docs/caextract.html"; @@ -45,7 +45,7 @@ let src = if nssOverride != null then nssOverride.src else fetchurl { url = "mirror://mozilla/security/nss/releases/NSS_${lib.replaceStrings ["."] ["_"] version}_RTM/src/nss-${version}.tar.gz"; - hash = "sha256-OtrtuecMPF9AYDv2CgHjNhkKbb4Bkp05XxawH+hKAVY="; + hash = "sha256-ms1lNMQdjq0Z/Kb8s//+0vnwnEN8PXn+5qTuZoqqk7Y="; }; dontBuild = true; diff --git a/pkgs/data/misc/dbip-country-lite/default.nix b/pkgs/data/misc/dbip-country-lite/default.nix new file mode 100644 index 0000000000000..ffa2ec24974b7 --- /dev/null +++ b/pkgs/data/misc/dbip-country-lite/default.nix @@ -0,0 +1,36 @@ +{ lib +, stdenvNoCC +, fetchurl +, dbip-country-lite +}: + +stdenvNoCC.mkDerivation rec { + pname = "dbip-country-lite"; + version = "2023-06"; + + src = fetchurl { + url = "https://download.db-ip.com/free/dbip-country-lite-${version}.mmdb.gz"; + hash = "sha256-H+f7OhI03qhgpldF05Nc5ohPIPNhyVRCwiVqeWkvIbc="; + }; + + dontUnpack = true; + + installPhase = '' + runHook preBuild + + gzip -c -d "$src" > dbip-country-lite.mmdb + install -Dm444 dbip-country-lite.mmdb "$out/share/dbip/dbip-country-lite.mmdb" + + runHook postBuild + ''; + + passthru.mmdb = "${dbip-country-lite}/share/dbip/dbip-country-lite.mmdb"; + + meta = with lib; { + description = "The free IP to Country Lite database by DB-IP"; + homepage = "https://db-ip.com/db/download/ip-to-country-lite"; + license = licenses.cc-by-40; + maintainers = with maintainers; [ nickcao ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/data/misc/hackage/pin.json b/pkgs/data/misc/hackage/pin.json index 86b575aceb68d..9208597dc1bf3 100644 --- a/pkgs/data/misc/hackage/pin.json +++ b/pkgs/data/misc/hackage/pin.json @@ -1,6 +1,6 @@ { - "commit": "c607134983625cc3fc664211145b7f31dff95d1c", - "url": "https://github.com/commercialhaskell/all-cabal-hashes/archive/c607134983625cc3fc664211145b7f31dff95d1c.tar.gz", - "sha256": "10frbz00cbklr3k0y45qd0wb9rwln7ivm05nb9lq7vl9a9dxx93w", - "msg": "Update from Hackage at 2023-05-10T18:33:26Z" + "commit": "4744eb212287f09a540ba7de2a4837b504956ed4", + "url": "https://github.com/commercialhaskell/all-cabal-hashes/archive/4744eb212287f09a540ba7de2a4837b504956ed4.tar.gz", + "sha256": "1lwdnjmndmixnv8saq68g45skf9yc3zq9npjm8gv9pdga7vy3m96", + "msg": "Update from Hackage at 2023-05-31T06:44:49Z" } diff --git a/pkgs/data/misc/sing-geoip/default.nix b/pkgs/data/misc/sing-geoip/default.nix index e8ea5ddd44280..b27a61ef02013 100644 --- a/pkgs/data/misc/sing-geoip/default.nix +++ b/pkgs/data/misc/sing-geoip/default.nix @@ -2,27 +2,22 @@ , stdenvNoCC , buildGoModule , fetchFromGitHub -, clash-geoip +, dbip-country-lite }: let generator = buildGoModule rec { pname = "sing-geoip"; - version = "unstable-2022-07-05"; + version = "20230512"; src = fetchFromGitHub { owner = "SagerNet"; repo = pname; - rev = "2ced72c94da4c9259c40353c375319d9d28a78f3"; - hash = "sha256-z8aP+OfTuzQNwOT3EEnI9uze/vbHTJLEiCPqIrnNUHw="; + rev = "refs/tags/${version}"; + hash = "sha256-Zm+5N/37hoHpH/TLNJrHeaBXI8G1jEpM1jz6Um8edNE="; }; - vendorHash = "sha256-lr0XMLFxJmLqIqCuGgmsFh324jmZVj71blmStMn41Rs="; - - postPatch = '' - # The codes args should start from the third args - substituteInPlace main.go --replace "os.Args[2:]" "os.Args[3:]" - ''; + vendorHash = "sha256-ejXAdsJwXhqet+Ca+pDLWwu0gex79VcIxW6rmhRnbTQ="; meta = with lib; { description = "GeoIP data for sing-box"; @@ -34,7 +29,7 @@ let in stdenvNoCC.mkDerivation rec { inherit (generator) pname; - inherit (clash-geoip) version; + inherit (dbip-country-lite) version; dontUnpack = true; @@ -43,8 +38,8 @@ stdenvNoCC.mkDerivation rec { buildPhase = '' runHook preBuild - ${pname} ${clash-geoip}/etc/clash/Country.mmdb geoip.db - ${pname} ${clash-geoip}/etc/clash/Country.mmdb geoip-cn.db cn + ${pname} ${dbip-country-lite.mmdb} geoip.db + ${pname} ${dbip-country-lite.mmdb} geoip-cn.db cn runHook postBuild ''; @@ -61,6 +56,6 @@ stdenvNoCC.mkDerivation rec { passthru = { inherit generator; }; meta = generator.meta // { - inherit (clash-geoip.meta) license; + inherit (dbip-country-lite.meta) license; }; } diff --git a/pkgs/data/misc/v2ray-domain-list-community/default.nix b/pkgs/data/misc/v2ray-domain-list-community/default.nix index 810b009967f1a..0f89ee5cf3f1b 100644 --- a/pkgs/data/misc/v2ray-domain-list-community/default.nix +++ b/pkgs/data/misc/v2ray-domain-list-community/default.nix @@ -3,14 +3,14 @@ let generator = pkgsBuildBuild.buildGoModule rec { pname = "v2ray-domain-list-community"; - version = "20230517022917"; + version = "20230601044045"; src = fetchFromGitHub { owner = "v2fly"; repo = "domain-list-community"; rev = version; - hash = "sha256-oRmVJyDfdJhAdF9nJrJs2SjoUs1pr39/xcCps5d3WyM="; + hash = "sha256-AVJinqMaVIxq6Tne1b5N6yuszLQ0sgmAtH+sd+sbInA="; }; - vendorHash = "sha256-zkf2neI1HiPkCrcw+cYoZ2L/OGkM8HPIv5gUqc05Wak="; + vendorHash = "sha256-lPOn296ngMCYdXoGNDG9okkLC5ryjKIL+UP98lyaKcg="; meta = with lib; { description = "community managed domain list"; homepage = "https://github.com/v2fly/domain-list-community"; diff --git a/pkgs/data/misc/v2ray-geoip/default.nix b/pkgs/data/misc/v2ray-geoip/default.nix index 8b91594c81ca2..5dbaa6c9c93bb 100644 --- a/pkgs/data/misc/v2ray-geoip/default.nix +++ b/pkgs/data/misc/v2ray-geoip/default.nix @@ -1,28 +1,69 @@ -{ lib, stdenv, fetchFromGitHub }: +{ lib +, stdenvNoCC +, fetchFromGitHub +, pkgsBuildBuild +, jq +, moreutils +, dbip-country-lite +}: -stdenv.mkDerivation rec { - pname = "v2ray-geoip"; - version = "202305250042"; +let + generator = pkgsBuildBuild.buildGoModule { + pname = "v2ray-geoip"; + version = "unstable-2023-03-27"; - src = fetchFromGitHub { - owner = "v2fly"; - repo = "geoip"; - rev = "e63c89ce477577a720eda422c6c04ba241a36021"; - sha256 = "sha256-Jv/QZyoMe/kSz/hdlwhfgQzCJGOH6Oypn6HU1SRPTis="; + src = fetchFromGitHub { + owner = "v2fly"; + repo = "geoip"; + rev = "9321a7f5e301a957228eba44845144b4555b6658"; + hash = "sha256-S30XEgzA9Vrq7I7REfO/WN/PKpcjcI7KZnrL4uw/Chs="; + }; + + vendorHash = "sha256-bAXeA1pDIUuEvzTLydUIX6S6fm6j7CUQmBG+7xvxUcc="; + + meta = with lib; { + description = "GeoIP for V2Ray"; + homepage = "https://github.com/v2fly/geoip"; + license = licenses.cc-by-sa-40; + maintainers = with maintainers; [ nickcao ]; + }; }; + input = { + type = "maxmindMMDB"; + action = "add"; + args = { + uri = dbip-country-lite.mmdb; + }; + }; +in +stdenvNoCC.mkDerivation { + inherit (generator) pname src; + inherit (dbip-country-lite) version; + + nativeBuildInputs = [ + jq + moreutils + ]; + + postPatch = '' + jq '.input[0] |= ${builtins.toJSON input}' config.json | sponge config.json + ''; + + buildPhase = '' + runHook preBuild + ${generator}/bin/geoip + runHook postBuild + ''; installPhase = '' runHook preInstall - install -m 0644 geoip.dat -D $out/share/v2ray/geoip.dat + install -Dm444 -t "$out/share/v2ray" output/dat/{cn,geoip-only-cn-private,geoip,private}.dat runHook postInstall ''; - passthru.updateScript = ./update.sh; + passthru.generator = generator; - meta = with lib; { - description = "GeoIP for V2Ray"; - homepage = "https://github.com/v2fly/geoip"; - license = licenses.cc-by-sa-40; - maintainers = with maintainers; [ nickcao ]; + meta = generator.meta // { + inherit (dbip-country-lite.meta) license; }; } diff --git a/pkgs/data/misc/v2ray-geoip/update.sh b/pkgs/data/misc/v2ray-geoip/update.sh deleted file mode 100755 index e39012e30a51a..0000000000000 --- a/pkgs/data/misc/v2ray-geoip/update.sh +++ /dev/null @@ -1,6 +0,0 @@ -#! /usr/bin/env nix-shell -#! nix-shell -i bash -p common-updater-scripts curl jq -set -euo pipefail - -COMMIT=$(curl "https://api.github.com/repos/v2fly/geoip/commits/release?per_page=1") -update-source-version v2ray-geoip "$(echo $COMMIT | jq -r .commit.message)" --file=pkgs/data/misc/v2ray-geoip/default.nix --rev="$(echo $COMMIT | jq -r .sha)" diff --git a/pkgs/desktops/cinnamon/bulky/default.nix b/pkgs/desktops/cinnamon/bulky/default.nix index 822c40694217a..3858623902e76 100644 --- a/pkgs/desktops/cinnamon/bulky/default.nix +++ b/pkgs/desktops/cinnamon/bulky/default.nix @@ -13,13 +13,13 @@ stdenv.mkDerivation rec { pname = "bulky"; - version = "2.7"; + version = "2.8"; src = fetchFromGitHub { owner = "linuxmint"; repo = "bulky"; rev = version; - hash = "sha256-Ps7ql6EAdoljQ6S8D2JxNSh0+jtEVZpnQv3fpvWkQSk="; + hash = "sha256-DZjX4xPyA30TTyOX+VyGSY/FWPX2316CYImDWRma9r0="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/cinnamon/warpinator/default.nix b/pkgs/desktops/cinnamon/warpinator/default.nix index fbf5df1fc7ce5..6f70d8f9bda75 100644 --- a/pkgs/desktops/cinnamon/warpinator/default.nix +++ b/pkgs/desktops/cinnamon/warpinator/default.nix @@ -33,13 +33,13 @@ let in stdenv.mkDerivation rec { pname = "warpinator"; - version = "1.6.1"; + version = "1.6.2"; src = fetchFromGitHub { owner = "linuxmint"; repo = pname; rev = version; - hash = "sha256-H8bFSgx3IysHCoKrMZ9gbwRl9forEjY90a/PIC68E6k="; + hash = "sha256-crGW1FBfTEiKqx981EzG414we4icyBv/keGtMlr8UFc="; }; nativeBuildInputs = [ @@ -77,11 +77,6 @@ stdenv.mkDerivation rec { --replace '"/bin/python3"' '"${pythonEnv.interpreter}"' \ --replace "/bin/bwrap" "${bubblewrap}/bin/bwrap" \ --replace 'GLib.find_program_in_path("bwrap")' "True" - - # Typo fix that can be removed on next update - # https://github.com/linuxmint/warpinator/pull/174 - substituteInPlace src/remote.py \ - --replace "receiver.remaining_count" "op.remaining_count" ''; passthru.updateScript = gitUpdater { diff --git a/pkgs/desktops/gnome/apps/gnome-boxes/default.nix b/pkgs/desktops/gnome/apps/gnome-boxes/default.nix index 4acb9b91eba17..6ae65e980dda9 100644 --- a/pkgs/desktops/gnome/apps/gnome-boxes/default.nix +++ b/pkgs/desktops/gnome/apps/gnome-boxes/default.nix @@ -48,11 +48,11 @@ stdenv.mkDerivation rec { pname = "gnome-boxes"; - version = "44.1"; + version = "44.2"; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.major version}/${pname}-${version}.tar.xz"; - sha256 = "OJcGDWlvf6LZEudywnYdvlNDOrXxnr+kvE6Jc4X6ulM="; + sha256 = "ndOJwUnQwPpXRW7DY9UaiCVflFVY+530KJTOeO+F34k="; }; patches = [ diff --git a/pkgs/desktops/gnome/core/eog/default.nix b/pkgs/desktops/gnome/core/eog/default.nix index 1c244d089c634..eadf77adbee66 100644 --- a/pkgs/desktops/gnome/core/eog/default.nix +++ b/pkgs/desktops/gnome/core/eog/default.nix @@ -31,13 +31,13 @@ stdenv.mkDerivation rec { pname = "eog"; - version = "44.1"; + version = "44.2"; outputs = [ "out" "dev" "devdoc" ]; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.major version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-4slj8jL+WhCR3MGL7CWnMOkbAq9uRmYB76VeUAzXTKs="; + sha256 = "sha256-Ro9Tn2tn7kYYgXDyREgMwxHdHv5Hhv4VVL/+JqZccsQ="; }; patches = [ diff --git a/pkgs/desktops/gnome/core/evolution-data-server/default.nix b/pkgs/desktops/gnome/core/evolution-data-server/default.nix index 6e087217f13a3..950be481ecede 100644 --- a/pkgs/desktops/gnome/core/evolution-data-server/default.nix +++ b/pkgs/desktops/gnome/core/evolution-data-server/default.nix @@ -50,13 +50,13 @@ stdenv.mkDerivation rec { pname = "evolution-data-server"; - version = "3.48.2"; + version = "3.48.3"; outputs = [ "out" "dev" ]; src = fetchurl { url = "mirror://gnome/sources/evolution-data-server/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "HzJD3xK08dMpjJl31iIaZWX9J578mE4czyVSRdBM/9U="; + sha256 = "tx5BLlL1Z8gzlLWSbfkrT09tLN3rrThKUXxyBnH62ZY="; }; patches = [ diff --git a/pkgs/desktops/gnome/core/gnome-control-center/default.nix b/pkgs/desktops/gnome/core/gnome-control-center/default.nix index ac623014e831c..2eee6813a0a2f 100644 --- a/pkgs/desktops/gnome/core/gnome-control-center/default.nix +++ b/pkgs/desktops/gnome/core/gnome-control-center/default.nix @@ -65,11 +65,11 @@ stdenv.mkDerivation rec { pname = "gnome-control-center"; - version = "44.1"; + version = "44.2"; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.major version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-er02UBjihnne9gpezTBJ2w+4XebaSaltrdIfuo2wAuc="; + sha256 = "sha256-BiPX0hz+lw0u80QgYjVFpZRbmJLmQfmgEc7Owhr9oQw="; }; patches = [ diff --git a/pkgs/desktops/gnome/core/mutter/43/default.nix b/pkgs/desktops/gnome/core/mutter/43/default.nix index 6c91193851a96..9f029419b2d20 100644 --- a/pkgs/desktops/gnome/core/mutter/43/default.nix +++ b/pkgs/desktops/gnome/core/mutter/43/default.nix @@ -51,13 +51,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "mutter"; - version = "43.5"; + version = "43.6"; outputs = [ "out" "dev" "man" "devdoc" ]; src = fetchurl { url = "mirror://gnome/sources/mutter/${lib.versions.major finalAttrs.version}/mutter-${finalAttrs.version}.tar.xz"; - sha256 = "/JAP4ahA2aeTyOLSDUTJCqCH1fv9x5Su5wluHYoJZxo="; + sha256 = "F1oiDSFv8Z8YLWeqc89eUaJVIL6bruaCAA4QRECkciU="; }; patches = [ diff --git a/pkgs/desktops/gnome/core/nautilus/default.nix b/pkgs/desktops/gnome/core/nautilus/default.nix index efcbffd927006..1364fe4211616 100644 --- a/pkgs/desktops/gnome/core/nautilus/default.nix +++ b/pkgs/desktops/gnome/core/nautilus/default.nix @@ -38,13 +38,13 @@ stdenv.mkDerivation rec { pname = "nautilus"; - version = "44.1"; + version = "44.2.1"; outputs = [ "out" "dev" "devdoc" ]; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.major version}/${pname}-${version}.tar.xz"; - sha256 = "NggCpZXj7brZYsjOo1O2K6qL5AdRO1FiyJyTPKU4eqk="; + sha256 = "2cYvAkcn96dvxqXaeIorAkffAaccKmARQ8YqrA/0Hkw="; }; patches = [ diff --git a/pkgs/desktops/gnome/core/sushi/default.nix b/pkgs/desktops/gnome/core/sushi/default.nix index 0172b1b83f42a..b9a7685435e68 100644 --- a/pkgs/desktops/gnome/core/sushi/default.nix +++ b/pkgs/desktops/gnome/core/sushi/default.nix @@ -23,11 +23,11 @@ stdenv.mkDerivation rec { pname = "sushi"; - version = "43.0"; + version = "44.2"; src = fetchurl { url = "mirror://gnome/sources/sushi/${lib.versions.major version}/${pname}-${version}.tar.xz"; - sha256 = "V4SFJhSasceE+5L7yTTDUU/lIqumSdXZ/t7H4bFHUns="; + sha256 = "bAAv4K6hkCe6RIta7JTVzXU8l1L5lu4DMVJChzjqQ+k="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/gnome/extensions/buildGnomeExtension.nix b/pkgs/desktops/gnome/extensions/buildGnomeExtension.nix index ca01c64217ae3..77b5339368503 100644 --- a/pkgs/desktops/gnome/extensions/buildGnomeExtension.nix +++ b/pkgs/desktops/gnome/extensions/buildGnomeExtension.nix @@ -36,7 +36,14 @@ let echo "${metadata}" | base64 --decode > $out/metadata.json ''; }; - dontBuild = true; + nativeBuildInputs = with pkgs; [ glib ]; + buildPhase = '' + runHook preBuild + if [ -d schemas ]; then + glib-compile-schemas --strict schemas + fi + runHook postBuild + ''; installPhase = '' runHook preInstall mkdir -p $out/share/gnome-shell/extensions/ diff --git a/pkgs/desktops/gnome/games/gnome-mahjongg/default.nix b/pkgs/desktops/gnome/games/gnome-mahjongg/default.nix index e2d7d0729c6ca..4ca1a535f186e 100644 --- a/pkgs/desktops/gnome/games/gnome-mahjongg/default.nix +++ b/pkgs/desktops/gnome/games/gnome-mahjongg/default.nix @@ -1,11 +1,11 @@ { stdenv , lib , fetchurl -, fetchpatch , pkg-config , gnome -, gtk3 -, wrapGAppsHook +, gtk4 +, wrapGAppsHook4 +, libadwaita , librsvg , gettext , itstool @@ -19,40 +19,30 @@ stdenv.mkDerivation rec { pname = "gnome-mahjongg"; - version = "3.38.3"; + version = "3.40.0"; src = fetchurl { url = "mirror://gnome/sources/gnome-mahjongg/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "144ia3zn9rhwa1xbdkvsz6m0dsysl6mxvqw9bnrlh845hmyy9cfj"; + sha256 = "WorIbXY8VmDdkCX3vAgxC5IjRvp+Lfe2SMmJTa4/GD8="; }; - patches = [ - # Fix build with meson 0.61 - # data/meson.build:24:0: ERROR: Function does not take positional arguments. - # data/meson.build:45:0: ERROR: Function does not take positional arguments. - (fetchpatch { - url = "https://gitlab.gnome.org/GNOME/gnome-mahjongg/-/commit/a2037b0747163601a5d5b57856d037eecf3a4db7.patch"; - sha256 = "Wcder6Y9H6c1f8I+IPDvST3umaCU21HgxfXn809JDz0="; - }) - ]; - nativeBuildInputs = [ meson ninja vala desktop-file-utils pkg-config - gnome.adwaita-icon-theme libxml2 itstool gettext - wrapGAppsHook + wrapGAppsHook4 glib # for glib-compile-schemas ]; buildInputs = [ glib - gtk3 + gtk4 + libadwaita librsvg ]; diff --git a/pkgs/desktops/gnome/misc/gnome-flashback/default.nix b/pkgs/desktops/gnome/misc/gnome-flashback/default.nix index 6bb3484ed24ab..cfe0903cce7b0 100644 --- a/pkgs/desktops/gnome/misc/gnome-flashback/default.nix +++ b/pkgs/desktops/gnome/misc/gnome-flashback/default.nix @@ -82,7 +82,7 @@ let rm -r $out/share/gnome-session rm -r $out/share/xsessions - rm -r $out/libexec + rm $out/libexec/gnome-flashback-metacity ''; nativeBuildInputs = [ diff --git a/pkgs/desktops/pantheon/apps/elementary-calculator/default.nix b/pkgs/desktops/pantheon/apps/elementary-calculator/default.nix index b8c4c2035098c..c06448bdc41a5 100644 --- a/pkgs/desktops/pantheon/apps/elementary-calculator/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-calculator/default.nix @@ -8,6 +8,8 @@ , python3 , vala , wrapGAppsHook4 +, elementary-gtk-theme +, elementary-icon-theme , granite7 , gtk4 , libgee @@ -15,13 +17,13 @@ stdenv.mkDerivation rec { pname = "elementary-calculator"; - version = "2.0.1"; + version = "2.0.2"; src = fetchFromGitHub { owner = "elementary"; repo = "calculator"; rev = version; - sha256 = "sha256-7aKJDlpODIysrHtqtD5wfd+dULFpD+LfWsjzg3OAxkY="; + sha256 = "sha256-PLdPu43ns03vhBwaGw4BWCLNvcJbhUA+5Gr5b//TqfA="; }; nativeBuildInputs = [ @@ -34,6 +36,7 @@ stdenv.mkDerivation rec { ]; buildInputs = [ + elementary-icon-theme granite7 gtk4 libgee @@ -44,6 +47,15 @@ stdenv.mkDerivation rec { patchShebangs meson/post_install.py ''; + preFixup = '' + gappsWrapperArgs+=( + # The GTK theme is hardcoded. + --prefix XDG_DATA_DIRS : "${elementary-gtk-theme}/share" + # The icon theme is hardcoded. + --prefix XDG_DATA_DIRS : "$XDG_ICON_DIRS" + ) + ''; + passthru = { updateScript = nix-update-script { }; }; diff --git a/pkgs/desktops/pantheon/apps/elementary-camera/default.nix b/pkgs/desktops/pantheon/apps/elementary-camera/default.nix index ed0c6bd918077..b1bb55f1d39b4 100644 --- a/pkgs/desktops/pantheon/apps/elementary-camera/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-camera/default.nix @@ -19,13 +19,13 @@ stdenv.mkDerivation rec { pname = "elementary-camera"; - version = "6.2.1"; + version = "6.2.2"; src = fetchFromGitHub { owner = "elementary"; repo = "camera"; rev = version; - sha256 = "sha256-ijzEMGXoH0gACem/3JaC/aOIaOQgP7Y7n48NgoDMKBk="; + sha256 = "sha256-Sj89TBat2RY2Ms02M0P7gmE9tXYk1yrnPLzDwGyAFZA="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/pantheon/apps/elementary-music/default.nix b/pkgs/desktops/pantheon/apps/elementary-music/default.nix index b38e315ac7733..258ff8e2dadb3 100644 --- a/pkgs/desktops/pantheon/apps/elementary-music/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-music/default.nix @@ -18,13 +18,13 @@ stdenv.mkDerivation rec { pname = "elementary-music"; - version = "7.0.1"; + version = "7.1.0"; src = fetchFromGitHub { owner = "elementary"; repo = "music"; rev = version; - sha256 = "sha256-PttmC1Z3rX2XWCECc320HMs692hSBsxkmnh1Q8a/Mg8="; + sha256 = "sha256-L+E5gDtIgVkfmOIhzS7x8vtyMJYqx/UQpYMChrt2Tgo="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/pantheon/apps/elementary-screenshot/default.nix b/pkgs/desktops/pantheon/apps/elementary-screenshot/default.nix index b41dbaaae88c8..1ac5d6979ebb2 100644 --- a/pkgs/desktops/pantheon/apps/elementary-screenshot/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-screenshot/default.nix @@ -18,13 +18,13 @@ stdenv.mkDerivation rec { pname = "elementary-screenshot"; - version = "6.0.3"; + version = "6.0.4"; src = fetchFromGitHub { owner = "elementary"; repo = "screenshot"; rev = version; - sha256 = "sha256-7BrowiMUDcf0raeOEFen2V3nenymgE6Rg5a3RilMQaI="; + sha256 = "sha256-xG67a19ySuYc5IXlEkaqhnDpDa2krF2y6PnhJkd/rOg="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/pantheon/apps/elementary-videos/default.nix b/pkgs/desktops/pantheon/apps/elementary-videos/default.nix index 8335bac3a9d68..7bdcd1dbac981 100644 --- a/pkgs/desktops/pantheon/apps/elementary-videos/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-videos/default.nix @@ -19,13 +19,13 @@ stdenv.mkDerivation rec { pname = "elementary-videos"; - version = "2.9.0"; + version = "2.9.1"; src = fetchFromGitHub { owner = "elementary"; repo = "videos"; rev = version; - sha256 = "sha256-QQcuhYe3/ZMqQEFJS72+vr1AzJC9Y7mr5Fa5yFsNYIc="; + sha256 = "sha256-G961ndONwHiqdeO26Ulxkg71ByfdFMAV35VFzu4TQ3M="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/pantheon/apps/switchboard-plugs/security-privacy/default.nix b/pkgs/desktops/pantheon/apps/switchboard-plugs/security-privacy/default.nix index 942522fe0d409..82ab908a387fd 100644 --- a/pkgs/desktops/pantheon/apps/switchboard-plugs/security-privacy/default.nix +++ b/pkgs/desktops/pantheon/apps/switchboard-plugs/security-privacy/default.nix @@ -21,13 +21,13 @@ stdenv.mkDerivation rec { pname = "switchboard-plug-security-privacy"; - version = "2.4.1"; + version = "7.0.0"; src = fetchFromGitHub { owner = "elementary"; repo = pname; rev = version; - sha256 = "sha256-k8IQumV8rjV3U4ACm5FxCqzSdwqKBaGAqsv45hsP/7c="; + sha256 = "sha256-J3lUyLNyxlleD2jklXB2jMRvLY6WG5iccA2lIaJL3d4="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/pantheon/desktop/elementary-default-settings/default.nix b/pkgs/desktops/pantheon/desktop/elementary-default-settings/default.nix index e02129cc8c081..6958547899fae 100644 --- a/pkgs/desktops/pantheon/desktop/elementary-default-settings/default.nix +++ b/pkgs/desktops/pantheon/desktop/elementary-default-settings/default.nix @@ -15,13 +15,13 @@ stdenv.mkDerivation rec { pname = "elementary-default-settings"; - version = "7.0.1"; + version = "7.0.2"; src = fetchFromGitHub { owner = "elementary"; repo = "default-settings"; rev = version; - sha256 = "sha256-RPnERK93GCfWyw1sIW5BitCIo11/t1koV4r1+NF5NdI="; + sha256 = "sha256-YFI1UM7CxjYkoIhSg9Fn81Ze6DX7D7p89xibk7ik8bI="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/pantheon/services/elementary-capnet-assist/default.nix b/pkgs/desktops/pantheon/services/elementary-capnet-assist/default.nix index fe2649f82a60b..4b88ea3e5abd0 100644 --- a/pkgs/desktops/pantheon/services/elementary-capnet-assist/default.nix +++ b/pkgs/desktops/pantheon/services/elementary-capnet-assist/default.nix @@ -19,13 +19,13 @@ stdenv.mkDerivation rec { pname = "elementary-capnet-assist"; - version = "2.4.3"; + version = "2.4.4"; src = fetchFromGitHub { owner = "elementary"; repo = "capnet-assist"; rev = version; - sha256 = "sha256-06DWkLkVpdSYnKOR8zqA0tvWXYrglBM9R/XEIfIkwQU="; + sha256 = "sha256-vnFrGHt/rtrDmXokYRoebVpNLfkZPe5IShRsXCWWsXs="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/plasma-5/kwayland-integration.nix b/pkgs/desktops/plasma-5/kwayland-integration.nix index 6310f9fee4acd..abe1c866671b9 100644 --- a/pkgs/desktops/plasma-5/kwayland-integration.nix +++ b/pkgs/desktops/plasma-5/kwayland-integration.nix @@ -14,4 +14,9 @@ mkDerivation { pname = "kwayland-integration"; nativeBuildInputs = [ extra-cmake-modules wayland-scanner ]; buildInputs = [ kguiaddons kidletime kwindowsystem kwayland qtbase wayland-protocols wayland ]; + + meta = { + description = "Integration plugins for various KDE frameworks for the Wayland windowing system"; + homepage = "https://invent.kde.org/plasma/kwayland-integration"; + }; } diff --git a/pkgs/desktops/plasma-5/plasma-browser-integration.nix b/pkgs/desktops/plasma-5/plasma-browser-integration.nix index dcd895efbbc73..06325911a9df5 100644 --- a/pkgs/desktops/plasma-5/plasma-browser-integration.nix +++ b/pkgs/desktops/plasma-5/plasma-browser-integration.nix @@ -33,4 +33,9 @@ mkDerivation { kactivities plasma-workspace ]; + + meta = { + description = "Components necessary to integrate browsers into the Plasma Desktop"; + homepage = "https://community.kde.org/Plasma/Browser_Integration"; + }; } diff --git a/pkgs/desktops/plasma-5/plasma-integration/default.nix b/pkgs/desktops/plasma-5/plasma-integration/default.nix index f88b737e0ec79..cf900af71438e 100644 --- a/pkgs/desktops/plasma-5/plasma-integration/default.nix +++ b/pkgs/desktops/plasma-5/plasma-integration/default.nix @@ -33,4 +33,9 @@ mkDerivation { wayland-protocols plasma-wayland-protocols ]; + + meta = { + description = "A set of plugins responsible for better integration of Qt applications when running on a KDE Plasma workspace"; + homepage = "https://invent.kde.org/plasma/plasma-integration"; + }; } diff --git a/pkgs/desktops/xfce/applications/xfce4-panel-profiles/default.nix b/pkgs/desktops/xfce/applications/xfce4-panel-profiles/default.nix index bb8ff12c31372..f4a2a4ef0d448 100644 --- a/pkgs/desktops/xfce/applications/xfce4-panel-profiles/default.nix +++ b/pkgs/desktops/xfce/applications/xfce4-panel-profiles/default.nix @@ -2,14 +2,14 @@ gtk3, libxfce4ui, libxfce4util, pango, harfbuzz, gdk-pixbuf, atk }: let - pythonEnv = python3.withPackages(ps: [ ps.pygobject3 ]); + pythonEnv = python3.withPackages(ps: [ ps.pygobject3 ps.psutil ]); makeTypelibPath = lib.makeSearchPathOutput "lib/girepository-1.0" "lib/girepository-1.0"; in mkXfceDerivation { category = "apps"; pname = "xfce4-panel-profiles"; - version = "1.0.13"; + version = "1.0.14"; - sha256 = "sha256-B3Q5d3KBN5m8wY82CIbIugJC8nNS+OcgKchn+TGrDhc="; + sha256 = "sha256-mGA70t2U4mqEbcrj/DDsPl++EKWyZ8YXzKzzVOrH5h8="; nativeBuildInputs = [ intltool gettext ]; propagatedBuildInputs = [ pythonEnv ]; diff --git a/pkgs/desktops/xfce/applications/xfce4-screensaver/default.nix b/pkgs/desktops/xfce/applications/xfce4-screensaver/default.nix index e7873eaa0b85c..fd119592ba436 100644 --- a/pkgs/desktops/xfce/applications/xfce4-screensaver/default.nix +++ b/pkgs/desktops/xfce/applications/xfce4-screensaver/default.nix @@ -19,9 +19,9 @@ mkXfceDerivation { category = "apps"; pname = "xfce4-screensaver"; - version = "4.18.1"; + version = "4.18.2"; - sha256 = "sha256-d72m2dW8jvM/EjgNSVaKsP5Ip7ioguB61/hy2cWw+dw="; + sha256 = "sha256-j5K5i+hl/miyHste73akZL62K6YTxXmN8mmFK9BCecs="; buildInputs = [ dbus-glib @@ -44,8 +44,8 @@ mkXfceDerivation { makeFlags = [ "DBUS_SESSION_SERVICE_DIR=$(out)/etc" ]; - meta = { + meta = with lib; { description = "Screensaver for Xfce"; - maintainers = with lib.maintainers; [ symphorien ]; + maintainers = with maintainers; [ symphorien ] ++ teams.xfce.members; }; } diff --git a/pkgs/desktops/xfce/core/xfce4-power-manager/default.nix b/pkgs/desktops/xfce/core/xfce4-power-manager/default.nix index 3a4285b33b772..8755234cbc827 100644 --- a/pkgs/desktops/xfce/core/xfce4-power-manager/default.nix +++ b/pkgs/desktops/xfce/core/xfce4-power-manager/default.nix @@ -1,21 +1,30 @@ -{ lib, mkXfceDerivation, automakeAddFlags, exo, gtk3, libnotify -, libxfce4ui, libxfce4util, upower, xfconf, xfce4-panel }: +{ lib +, mkXfceDerivation +, gtk3 +, libnotify +, libxfce4ui +, libxfce4util +, upower +, xfconf +, xfce4-panel +}: mkXfceDerivation { category = "xfce"; pname = "xfce4-power-manager"; - version = "4.18.1"; + version = "4.18.2"; - sha256 = "sha256-H9tu94ZQLLQhXIDtIWL3qZJo/ux2xC2Y9m7uwwey8M8="; + sha256 = "sha256-1+DP5CACzzj96FyRTeCdVEFORnpzFT49d9Uk1iijbFs="; - nativeBuildInputs = [ automakeAddFlags exo ]; - buildInputs = [ gtk3 libnotify libxfce4ui libxfce4util upower xfconf xfce4-panel ]; - - postPatch = '' - substituteInPlace configure.ac.in --replace gio-2.0 gio-unix-2.0 - automakeAddFlags src/Makefile.am xfce4_power_manager_CFLAGS GIO_CFLAGS - automakeAddFlags settings/Makefile.am xfce4_power_manager_settings_CFLAGS GIO_CFLAGS - ''; + buildInputs = [ + gtk3 + libnotify + libxfce4ui + libxfce4util + upower + xfconf + xfce4-panel + ]; meta = with lib; { description = "A power manager for the Xfce Desktop Environment"; diff --git a/pkgs/desktops/xfce/core/xfce4-session/default.nix b/pkgs/desktops/xfce/core/xfce4-session/default.nix index b4391f7645f89..2db20a2ee5166 100644 --- a/pkgs/desktops/xfce/core/xfce4-session/default.nix +++ b/pkgs/desktops/xfce/core/xfce4-session/default.nix @@ -1,13 +1,35 @@ -{ lib, mkXfceDerivation, polkit, exo, libxfce4util, libxfce4ui, xfconf, iceauth, gtk3, glib, libwnck, xfce4-session }: +{ lib +, mkXfceDerivation +, polkit +, exo +, libxfce4util +, libxfce4ui +, xfconf +, iceauth +, gtk3 +, glib +, libwnck +, xfce4-session +}: mkXfceDerivation { category = "xfce"; pname = "xfce4-session"; - version = "4.18.2"; + version = "4.18.3"; - sha256 = "sha256-EyDMHGFjZWux7atpiUoCMmJIN2PGlF9h2L5qaFAzrKU="; + sha256 = "sha256-qCkE3aVYVwphoO1ZAyzpL1ZtsLaP6XT1H1rlFoBI3yg="; - buildInputs = [ exo gtk3 glib libxfce4ui libxfce4util libwnck xfconf polkit iceauth ]; + buildInputs = [ + exo + gtk3 + glib + libxfce4ui + libxfce4util + libwnck + xfconf + polkit + iceauth + ]; configureFlags = [ "--with-xsession-prefix=${placeholder "out"}" ]; diff --git a/pkgs/desktops/xfce/panel-plugins/xfce4-pulseaudio-plugin/default.nix b/pkgs/desktops/xfce/panel-plugins/xfce4-pulseaudio-plugin/default.nix index 179a3672ab029..83fb651fc5889 100644 --- a/pkgs/desktops/xfce/panel-plugins/xfce4-pulseaudio-plugin/default.nix +++ b/pkgs/desktops/xfce/panel-plugins/xfce4-pulseaudio-plugin/default.nix @@ -16,8 +16,8 @@ mkXfceDerivation { category = "panel-plugins"; pname = "xfce4-pulseaudio-plugin"; - version = "0.4.6"; - sha256 = "sha256-P1ln0cBskRAPsIygKAZeQLvt51xgMOnm0WZoR5sRvsM="; + version = "0.4.7"; + sha256 = "sha256-9fumaX4M6NTXHM1gGa4wB/Uq+CZIUnvm9kC+pJNbWXU="; nativeBuildInputs = [ automakeAddFlags diff --git a/pkgs/development/beam-modules/elixir-ls/default.nix b/pkgs/development/beam-modules/elixir-ls/default.nix index 8573b4b7ca167..a4666f1520ab3 100644 --- a/pkgs/development/beam-modules/elixir-ls/default.nix +++ b/pkgs/development/beam-modules/elixir-ls/default.nix @@ -21,7 +21,7 @@ mixRelease { mixFodDeps = fetchMixDeps { pname = "mix-deps-${pname}"; inherit src version elixir; - sha256 = "sha256-jF1Plkz1D85aWkiNgeBlJmHndhr7us+8+m/gMkXHvDw="; + hash = "sha256-jF1Plkz1D85aWkiNgeBlJmHndhr7us+8+m/gMkXHvDw="; }; # elixir-ls is an umbrella app diff --git a/pkgs/development/beam-modules/erlang-ls/default.nix b/pkgs/development/beam-modules/erlang-ls/default.nix index 25dd9879eeea1..952034d5e01a2 100644 --- a/pkgs/development/beam-modules/erlang-ls/default.nix +++ b/pkgs/development/beam-modules/erlang-ls/default.nix @@ -1,7 +1,7 @@ { fetchFromGitHub, fetchgit, fetchHex, rebar3Relx, buildRebar3, rebar3-proper , stdenv, writeScript, lib, erlang }: let - version = "0.46.2"; + version = "0.47.1"; owner = "erlang-ls"; repo = "erlang_ls"; deps = import ./rebar-deps.nix { @@ -24,7 +24,7 @@ rebar3Relx { inherit version; src = fetchFromGitHub { inherit owner repo; - sha256 = "sha256-J0Qa8s8v/KT4/Jaj9JYsfvzviMUx8FnX0nMoeH8bkB8="; + sha256 = "sha256-pW78CBOM0Yi5taPHdCfTTb9H1fbhuQFpf6jaf0cTQdA="; rev = version; }; releaseType = "escript"; diff --git a/pkgs/development/beam-modules/fetch-mix-deps.nix b/pkgs/development/beam-modules/fetch-mix-deps.nix index 6d047dbe1ca59..b9a1add3c7d16 100644 --- a/pkgs/development/beam-modules/fetch-mix-deps.nix +++ b/pkgs/development/beam-modules/fetch-mix-deps.nix @@ -2,7 +2,8 @@ { pname , version -, sha256 +, hash ? "" +, sha256 ? "" , src , mixEnv ? "prod" , debug ? false @@ -13,6 +14,12 @@ , ... }@attrs: +let + hash_ = + if hash != "" then { outputHashAlgo = null; outputHash = hash; } + else if sha256 != "" then { outputHashAlgo = "sha256"; outputHash = sha256; } + else { outputHashAlgo = "sha256"; outputHash = lib.fakeSha256; }; +in stdenvNoCC.mkDerivation (attrs // { nativeBuildInputs = [ elixir hex cacert git ]; @@ -51,10 +58,8 @@ stdenvNoCC.mkDerivation (attrs // { runHook postInstall ''; - outputHashAlgo = "sha256"; outputHashMode = "recursive"; - outputHash = sha256; impureEnvVars = lib.fetchers.proxyImpureEnvVars; inherit meta; -}) +} // hash_) diff --git a/pkgs/development/compilers/bfc/default.nix b/pkgs/development/compilers/bfc/default.nix new file mode 100644 index 0000000000000..10c868c19ac5e --- /dev/null +++ b/pkgs/development/compilers/bfc/default.nix @@ -0,0 +1,44 @@ +{ lib +, rustPlatform +, fetchFromGitHub +, llvmPackages_13 +, libxml2 +, ncurses +, zlib +, stdenv +}: + +rustPlatform.buildRustPackage { + pname = "bfc"; + version = "unstable-2023-02-02"; + + src = fetchFromGitHub { + owner = "Wilfred"; + repo = "bfc"; + rev = "647379de6ec36b64ba0a098589c8374d0ce32690"; + hash = "sha256-pPx9S7EnrL6aIvLlrCjGDKNYLhzd6ud1RvN+qCiZGXk="; + }; + + cargoHash = "sha256-5RPB4biLB2BTmfgOGzvnnQjnGp3cTmJdU1CVTAFRvKE="; + + buildInputs = [ + libxml2 + ncurses + zlib + ]; + + env = { + LLVM_SYS_130_PREFIX = llvmPackages_13.llvm.dev; + }; + + # process didn't exit successfully: <...> SIGSEGV + doCheck = false; + + meta = with lib; { + description = "An industrial-grade brainfuck compiler"; + homepage = "https://bfc.wilfred.me.uk"; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ figsoda ]; + broken = stdenv.isAarch64 && stdenv.isLinux; + }; +} diff --git a/pkgs/development/compilers/cudatoolkit/common.nix b/pkgs/development/compilers/cudatoolkit/common.nix index 2f8a8e51f4eef..55d7e2fb64cd3 100644 --- a/pkgs/development/compilers/cudatoolkit/common.nix +++ b/pkgs/development/compilers/cudatoolkit/common.nix @@ -158,6 +158,10 @@ backendStdenv.mkDerivation rec { "libcom_err.so.2" ]; + preFixup = '' + patchelf $out/lib64/libnvrtc.so --add-needed libnvrtc-builtins.so + ''; + unpackPhase = '' sh $src --keep --noexec @@ -342,4 +346,3 @@ backendStdenv.mkDerivation rec { maintainers = teams.cuda.members; }; } - diff --git a/pkgs/development/compilers/dtc/0001-Depend-on-.a-instead-of-.so-when-building-static.patch b/pkgs/development/compilers/dtc/0001-Depend-on-.a-instead-of-.so-when-building-static.patch deleted file mode 100644 index dcc3a08c1eda0..0000000000000 --- a/pkgs/development/compilers/dtc/0001-Depend-on-.a-instead-of-.so-when-building-static.patch +++ /dev/null @@ -1,90 +0,0 @@ -From c1d426bdd477ffeb3dfa03501de089a341b85d0b Mon Sep 17 00:00:00 2001 -From: Tero Tervala <tero.tervala@unikie.com> -Date: Wed, 15 Jun 2022 13:44:55 +0300 -Subject: [PATCH] Depend on .a instead of .so when building static - -Static build needs to be indicated with environment variable: -STATIC_BUILD=1 - -Checks are skipped on static builds - -Signed-off-by: Tero Tervala <tero.tervala@unikie.com> ---- - Makefile | 12 +++++++++--- - tests/Makefile.tests | 11 ++++++++--- - 2 files changed, 17 insertions(+), 6 deletions(-) - -diff --git a/Makefile b/Makefile -index ee77115..9f550b4 100644 ---- a/Makefile -+++ b/Makefile -@@ -198,6 +198,12 @@ LIBFDT_lib = $(LIBFDT_dir)/$(LIBFDT_LIB) - LIBFDT_include = $(addprefix $(LIBFDT_dir)/,$(LIBFDT_INCLUDES)) - LIBFDT_version = $(addprefix $(LIBFDT_dir)/,$(LIBFDT_VERSION)) - -+ifeq ($(STATIC_BUILD),1) -+ LIBFDT_dep = $(LIBFDT_archive) -+else -+ LIBFDT_dep = $(LIBFDT_lib) -+endif -+ - include $(LIBFDT_dir)/Makefile.libfdt - - .PHONY: libfdt -@@ -261,11 +267,11 @@ convert-dtsv0: $(CONVERT_OBJS) - - fdtdump: $(FDTDUMP_OBJS) - --fdtget: $(FDTGET_OBJS) $(LIBFDT_lib) -+fdtget: $(FDTGET_OBJS) $(LIBFDT_dep) - --fdtput: $(FDTPUT_OBJS) $(LIBFDT_lib) -+fdtput: $(FDTPUT_OBJS) $(LIBFDT_dep) - --fdtoverlay: $(FDTOVERLAY_OBJS) $(LIBFDT_lib) -+fdtoverlay: $(FDTOVERLAY_OBJS) $(LIBFDT_dep) - - dist: - git archive --format=tar --prefix=dtc-$(dtc_version)/ HEAD \ -diff --git a/tests/Makefile.tests b/tests/Makefile.tests -index 2f78952..f13b16d 100644 ---- a/tests/Makefile.tests -+++ b/tests/Makefile.tests -@@ -60,17 +60,17 @@ TESTS_CLEANDIRS = $(TESTS_CLEANDIRS_L:%=$(TESTS_PREFIX)%) - .PHONY: tests - tests: $(TESTS) $(TESTS_TREES) - --$(LIB_TESTS): %: $(TESTS_PREFIX)testutils.o util.o $(LIBFDT_lib) -+$(LIB_TESTS): %: $(TESTS_PREFIX)testutils.o util.o $(LIBFDT_dep) - - # Not necessary on all platforms; allow -ldl to be excluded instead of forcing - # other platforms to patch it out. - LIBDL = -ldl --$(DL_LIB_TESTS): %: %.o $(TESTS_PREFIX)testutils.o util.o $(LIBFDT_lib) -+$(DL_LIB_TESTS): %: %.o $(TESTS_PREFIX)testutils.o util.o $(LIBFDT_dep) - @$(VECHO) LD [libdl] $@ - $(LINK.c) -o $@ $^ $(LIBDL) - - $(LIBTREE_TESTS): %: $(TESTS_PREFIX)testutils.o $(TESTS_PREFIX)trees.o \ -- util.o $(LIBFDT_lib) -+ util.o $(LIBFDT_dep) - - $(TESTS_PREFIX)dumptrees: $(TESTS_PREFIX)trees.o - -@@ -83,8 +83,13 @@ tests_clean: - rm -f $(TESTS_CLEANFILES) - rm -rf $(TESTS_CLEANDIRS) - -+ifeq ($(STATIC_BUILD),1) -+check: -+ @echo Skipping checks for static build -+else - check: tests ${TESTS_BIN} $(TESTS_PYLIBFDT) - cd $(TESTS_PREFIX); ./run_tests.sh -+endif - - ifeq ($(NO_VALGRIND),1) - checkm: --- -2.33.3 - diff --git a/pkgs/development/compilers/dtc/default.nix b/pkgs/development/compilers/dtc/default.nix index eab95e2de8c79..44d98d8e36bd9 100644 --- a/pkgs/development/compilers/dtc/default.nix +++ b/pkgs/development/compilers/dtc/default.nix @@ -2,6 +2,8 @@ , lib , fetchgit , fetchpatch +, meson +, ninja , flex , bison , pkg-config @@ -14,39 +16,75 @@ stdenv.mkDerivation rec { pname = "dtc"; - version = "1.6.1"; + version = "1.7.0"; src = fetchgit { url = "https://git.kernel.org/pub/scm/utils/dtc/dtc.git"; rev = "refs/tags/v${version}"; - sha256 = "sha256-gx9LG3U9etWhPxm7Ox7rOu9X5272qGeHqZtOe68zFs4="; + sha256 = "sha256-FMh3VvlY3fUK8fbd0M+aCmlUrmG9YegiOOQ7MOByffc="; }; patches = [ - # fix python 3.10 compatibility - # based on without requiring the setup.py rework - # https://git.kernel.org/pub/scm/utils/dtc/dtc.git/commit/?id=383e148b70a47ab15f97a19bb999d54f9c3e810f - ./python-3.10.patch + # meson: Fix cell overflow tests when running from meson + (fetchpatch { + url = "https://github.com/dgibson/dtc/commit/32174a66efa4ad19fc6a2a6422e4af2ae4f055cb.patch"; + sha256 = "sha256-C7OzwY0zq+2CV3SB5unI7Ill2M3deF7FXeQE3B/Kx2s="; + }) - # fix dtc static building - ./0001-Depend-on-.a-instead-of-.so-when-building-static.patch + # Use #ifdef NO_VALGRIND + (fetchpatch { + url = "https://github.com/dgibson/dtc/commit/41821821101ad8a9f83746b96b163e5bcbdbe804.patch"; + sha256 = "sha256-7QEFDtap2DWbUGqtyT/RgJZJFldKB8oSubKiCtLZ0w4="; + }) + + # dtc: Fix linker options so it also works in Darwin + (fetchpatch { + url = "https://github.com/dgibson/dtc/commit/3acde70714df3623e112cf3ec99fc9b5524220b8.patch"; + sha256 = "sha256-uLXL0Sjcn+bnMuF+A6PjUW1Rq6uNg1dQl58zbeYpP/U="; + }) + + # meson: allow disabling tests + (fetchpatch { + url = "https://github.com/dgibson/dtc/commit/35f26d2921b68d97fefbd5a2b6e821a2f02ff65d.patch"; + sha256 = "sha256-cO4f/jJX/pQL7kk4jpKUhsCVESW2ZuWaTr7z3BuvVkw="; + }) ]; - nativeBuildInputs = [ flex bison pkg-config which ] - ++ lib.optionals pythonSupport [ python swig ]; + env.SETUPTOOLS_SCM_PRETEND_VERSION = version; + + nativeBuildInputs = [ + meson + ninja + flex + bison + pkg-config + which + ] ++ lib.optionals pythonSupport [ + python + python.pkgs.setuptools-scm + swig + ]; buildInputs = [ libyaml ]; postPatch = '' - patchShebangs pylibfdt/ + patchShebangs setup.py + + # meson.build: bump version to 1.7.0 + substituteInPlace libfdt/meson.build \ + --replace "version: '1.6.0'," "version: '${version}'," + substituteInPlace meson.build \ + --replace "version: '1.6.0'," "version: '${version}'," ''; - makeFlags = [ "PYTHON=python" "STATIC_BUILD=${toString stdenv.hostPlatform.isStatic}" ]; - installFlags = [ "INSTALL=install" "PREFIX=$(out)" "SETUP_PREFIX=$(out)" ]; + # Required for installation of Python library and is innocuous otherwise. + env.DESTDIR = "/"; - postFixup = lib.optionalString stdenv.isDarwin '' - install_name_tool -id $out/lib/libfdt.dylib $out/lib/libfdt-${version}.dylib - ''; + mesonAutoFeatures = "auto"; + mesonFlags = [ + (lib.mesonBool "static-build" stdenv.hostPlatform.isStatic) + (lib.mesonBool "tests" doCheck) + ]; # Checks are broken on aarch64 darwin # https://github.com/NixOS/nixpkgs/pull/118700#issuecomment-885892436 diff --git a/pkgs/development/compilers/dtc/python-3.10.patch b/pkgs/development/compilers/dtc/python-3.10.patch deleted file mode 100644 index e6725a6831f12..0000000000000 --- a/pkgs/development/compilers/dtc/python-3.10.patch +++ /dev/null @@ -1,28 +0,0 @@ -diff --git a/pylibfdt/libfdt.i b/pylibfdt/libfdt.i -index 51ee801..075ef70 100644 ---- a/pylibfdt/libfdt.i -+++ b/pylibfdt/libfdt.i -@@ -1044,9 +1044,9 @@ typedef uint32_t fdt32_t; - $result = Py_None; - else - %#if PY_VERSION_HEX >= 0x03000000 -- $result = Py_BuildValue("y#", $1, *arg4); -+ $result = Py_BuildValue("y#", $1, (Py_ssize_t)*arg4); - %#else -- $result = Py_BuildValue("s#", $1, *arg4); -+ $result = Py_BuildValue("s#", $1, (Py_ssize_t)*arg4); - %#endif - } - -diff --git a/pylibfdt/setup.py b/pylibfdt/setup.py -index ef40f15..81e161a 100755 ---- a/pylibfdt/setup.py -+++ b/pylibfdt/setup.py -@@ -42,6 +42,7 @@ def get_version(): - libfdt_module = Extension( - '_libfdt', - sources=[os.path.join(srcdir, 'libfdt.i')], -+ define_macros=[('PY_SSIZE_T_CLEAN', None)], - include_dirs=[os.path.join(srcdir, '../libfdt')], - libraries=['fdt'], - library_dirs=[os.path.join(top_builddir, 'libfdt')], diff --git a/pkgs/development/compilers/elm/packages/elm-test-rs.nix b/pkgs/development/compilers/elm/packages/elm-test-rs.nix index 09d453b00f834..5e2a5502b2110 100644 --- a/pkgs/development/compilers/elm/packages/elm-test-rs.nix +++ b/pkgs/development/compilers/elm/packages/elm-test-rs.nix @@ -17,7 +17,6 @@ rustPlatform.buildRustPackage rec { ]); cargoSha256 = "sha256:1dpdlzv96kpc25yf5jgsz9qldghyw35x382qpxhkadkn5dryzjvd"; - verifyCargoDeps = true; # Tests perform networking and therefore can't work in sandbox doCheck = false; diff --git a/pkgs/development/compilers/flutter/default.nix b/pkgs/development/compilers/flutter/default.nix index b96452d0c89fc..0f57919a95088 100644 --- a/pkgs/development/compilers/flutter/default.nix +++ b/pkgs/development/compilers/flutter/default.nix @@ -34,15 +34,15 @@ let inherit wrapFlutter mkCustomFlutter mkFlutter; buildFlutterApplication = callPackage ../../../build-support/flutter { # Package a minimal version of Flutter that only uses Linux desktop release artifacts. - flutter = wrapFlutter - (mkCustomFlutter (args // { - includedEngineArtifacts = { - common = [ "flutter_patched_sdk_product" ]; - platform.linux = lib.optionals stdenv.hostPlatform.isLinux - (lib.genAttrs ((lib.optional stdenv.hostPlatform.isx86_64 "x64") ++ (lib.optional stdenv.hostPlatform.isAarch64 "arm64")) - (architecture: [ "release" ])); - }; - })); + flutter = (wrapFlutter (mkCustomFlutter args)).override { + supportsAndroid = false; + includedEngineArtifacts = { + common = [ "flutter_patched_sdk_product" ]; + platform.linux = lib.optionals stdenv.hostPlatform.isLinux + (lib.genAttrs ((lib.optional stdenv.hostPlatform.isx86_64 "x64") ++ (lib.optional stdenv.hostPlatform.isAarch64 "arm64")) + (architecture: [ "release" ])); + }; + }; }; }; }); diff --git a/pkgs/development/compilers/flutter/flutter.nix b/pkgs/development/compilers/flutter/flutter.nix index 71f70acf9da56..3dbab3529e77f 100644 --- a/pkgs/development/compilers/flutter/flutter.nix +++ b/pkgs/development/compilers/flutter/flutter.nix @@ -8,13 +8,7 @@ "flutter_patched_sdk" "flutter_patched_sdk_product" ]; - platform = { - android = lib.optionalAttrs stdenv.hostPlatform.isx86_64 - ((lib.genAttrs [ "arm" "arm64" "x64" ] (architecture: [ "profile" "release" ])) // { x86 = [ "jit-release" ]; }); - linux = lib.optionals stdenv.hostPlatform.isLinux - (lib.genAttrs ((lib.optional stdenv.hostPlatform.isx86_64 "x64") ++ (lib.optional stdenv.hostPlatform.isAarch64 "arm64")) - (architecture: [ "debug" "profile" "release" ])); - }; + platform = { }; } , lib diff --git a/pkgs/development/compilers/flutter/wrapper.nix b/pkgs/development/compilers/flutter/wrapper.nix index cac1bcf41d8b6..81e5e6e4fdcdb 100644 --- a/pkgs/development/compilers/flutter/wrapper.nix +++ b/pkgs/development/compilers/flutter/wrapper.nix @@ -2,7 +2,9 @@ , stdenv , callPackage , flutter -, supportsLinuxDesktop ? stdenv.isLinux +, supportsLinuxDesktop ? stdenv.hostPlatform.isLinux +, supportsAndroid ? stdenv.hostPlatform.isx86_64 +, includedEngineArtifacts ? null , extraPkgConfigPackages ? [ ] , extraLibraries ? [ ] , extraIncludes ? [ ] @@ -33,11 +35,27 @@ }: let + flutterWithArtifacts = flutter.override { + includedEngineArtifacts = if includedEngineArtifacts != null then includedEngineArtifacts else { + common = [ + "flutter_patched_sdk" + "flutter_patched_sdk_product" + ]; + platform = { + android = lib.optionalAttrs supportsAndroid + ((lib.genAttrs [ "arm" "arm64" "x64" ] (architecture: [ "profile" "release" ])) // { x86 = [ "jit-release" ]; }); + linux = lib.optionalAttrs supportsLinuxDesktop + (lib.genAttrs ((lib.optional stdenv.hostPlatform.isx86_64 "x64") ++ (lib.optional stdenv.hostPlatform.isAarch64 "arm64")) + (architecture: [ "debug" "profile" "release" ])); + }; + }; + }; + # By default, Flutter stores downloaded files (such as the Pub cache) in the SDK directory. # Wrap it to ensure that it does not do that, preferring home directories instead. immutableFlutter = writeShellScript "flutter_immutable" '' export PUB_CACHE=''${PUB_CACHE:-"$HOME/.pub-cache"} - ${flutter}/bin/flutter "$@" + ${flutterWithArtifacts}/bin/flutter "$@" ''; # Tools that the Flutter tool depends on. @@ -87,12 +105,12 @@ in { nativeBuildInputs = [ makeWrapper ]; - passthru = flutter.passthru // { - inherit (flutter) version; - unwrapped = flutter; + passthru = flutterWithArtifacts.passthru // { + inherit (flutterWithArtifacts) version; + unwrapped = flutterWithArtifacts; }; - inherit (flutter) meta; + inherit (flutterWithArtifacts) meta; } '' for path in ${builtins.concatStringsSep " " (builtins.foldl' (paths: pkg: paths ++ (map (directory: "'${pkg}/${directory}/pkgconfig'") ["lib" "share"])) [ ] pkgConfigPackages)}; do addToSearchPath FLUTTER_PKG_CONFIG_PATH "$path" diff --git a/pkgs/development/compilers/gcc/12/default.nix b/pkgs/development/compilers/gcc/12/default.nix index 92bec39e72163..f0886f862c974 100644 --- a/pkgs/development/compilers/gcc/12/default.nix +++ b/pkgs/development/compilers/gcc/12/default.nix @@ -55,7 +55,7 @@ with lib; with builtins; let majorVersion = "12"; - version = "${majorVersion}.2.0"; + version = "${majorVersion}.3.0"; disableBootstrap = !stdenv.hostPlatform.isDarwin && !profiledCompiler; inherit (stdenv) buildPlatform hostPlatform targetPlatform; @@ -69,15 +69,19 @@ let majorVersion = "12"; ../gcc-12-gfortran-driving.patch ../ppc-musl.patch ../install-info-files-serially.patch + + # backport ICE fix on ccache code + ./lambda-ICE-PR109241.patch ] # We only apply this patch when building a native toolchain for aarch64-darwin, as it breaks building # a foreign one: https://github.com/iains/gcc-12-branch/issues/18 - ++ optional (stdenv.isDarwin && stdenv.isAarch64 && buildPlatform == hostPlatform && hostPlatform == targetPlatform) (fetchpatch { - name = "gcc-12-darwin-aarch64-support.patch"; - url = "https://github.com/Homebrew/formula-patches/raw/1d184289/gcc/gcc-12.2.0-arm.diff"; - sha256 = "sha256-omclLslGi/2yCV4pNBMaIpPDMW3tcz/RXdupbNbeOHA="; - }) - ++ optional langD ../libphobos.patch + ++ optionals (stdenv.isDarwin && stdenv.isAarch64 && buildPlatform == hostPlatform && hostPlatform == targetPlatform) [ + (fetchurl { + name = "gcc-12-darwin-aarch64-support.patch"; + url = "https://raw.githubusercontent.com/Homebrew/formula-patches/f1188b90d610e2ed170b22512ff7435ba5c891e2/gcc/gcc-12.3.0.diff"; + sha256 = "sha256-naL5ZNiurqfDBiPSU8PTbTmLqj25B+vjjiqc4fAFgYs="; + }) + ] ++ optional langD ../libphobos.patch # backport fixes to build gccgo with musl libc ++ optionals (langGo && stdenv.hostPlatform.isMusl) [ @@ -206,7 +210,7 @@ lib.pipe (stdenv.mkDerivation ({ src = fetchurl { url = "mirror://gcc/releases/gcc-${version}/gcc-${version}.tar.xz"; - sha256 = "sha256-5UnPnPNZSgDie2WJ1DItcOByDN0hPzm+tBgeBpJiMP8="; + sha256 = "sha256-lJpdT5nnhkIak7Uysi/6tVeN5zITaZdbka7Jet/ajDs="; }; inherit patches; diff --git a/pkgs/development/compilers/gcc/12/lambda-ICE-PR109241.patch b/pkgs/development/compilers/gcc/12/lambda-ICE-PR109241.patch new file mode 100644 index 0000000000000..a27a8a08d9d5d --- /dev/null +++ b/pkgs/development/compilers/gcc/12/lambda-ICE-PR109241.patch @@ -0,0 +1,77 @@ +https://gcc.gnu.org/PR109241 + +Fix ICE on ccache. + +From 396a4e76afec30d2461638f569cae18955eb4ad2 Mon Sep 17 00:00:00 2001 +From: Jason Merrill <jason@redhat.com> +Date: Wed, 22 Mar 2023 16:11:47 -0400 +Subject: [PATCH] c++: local class in nested generic lambda [PR109241] + +In this testcase, the tree walk to look for bare parameter packs was +confused by finding a type with no TREE_BINFO. But it should be fine that +it's unset; we already checked for unexpanded packs at parse time. + +I also tried doing the partial instantiation of the local class, which is +probably the long-term direction we want to go, but for stage 4 let's go +with this safer change. + + PR c++/109241 + +gcc/cp/ChangeLog: + + * pt.cc (find_parameter_packs_r): Handle null TREE_BINFO. + +gcc/testsuite/ChangeLog: + + * g++.dg/cpp1y/lambda-generic-local-class2.C: New test. +--- + gcc/cp/pt.cc | 12 ++++++++---- + .../g++.dg/cpp1y/lambda-generic-local-class2.C | 13 +++++++++++++ + 2 files changed, 21 insertions(+), 4 deletions(-) + create mode 100644 gcc/testsuite/g++.dg/cpp1y/lambda-generic-local-class2.C + +diff --git a/gcc/cp/pt.cc b/gcc/cp/pt.cc +index c7f4a95a723..79bc9c014c8 100644 +--- a/gcc/cp/pt.cc ++++ b/gcc/cp/pt.cc +@@ -4106,10 +4106,14 @@ find_parameter_packs_r (tree *tp, int *walk_subtrees, void* data) + case TAG_DEFN: + t = TREE_TYPE (t); + if (CLASS_TYPE_P (t)) +- /* Local class, need to look through the whole definition. */ +- for (tree bb : BINFO_BASE_BINFOS (TYPE_BINFO (t))) +- cp_walk_tree (&BINFO_TYPE (bb), &find_parameter_packs_r, +- ppd, ppd->visited); ++ { ++ /* Local class, need to look through the whole definition. ++ TYPE_BINFO might be unset for a partial instantiation. */ ++ if (TYPE_BINFO (t)) ++ for (tree bb : BINFO_BASE_BINFOS (TYPE_BINFO (t))) ++ cp_walk_tree (&BINFO_TYPE (bb), &find_parameter_packs_r, ++ ppd, ppd->visited); ++ } + else + /* Enum, look at the values. */ + for (tree l = TYPE_VALUES (t); l; l = TREE_CHAIN (l)) +diff --git a/gcc/testsuite/g++.dg/cpp1y/lambda-generic-local-class2.C b/gcc/testsuite/g++.dg/cpp1y/lambda-generic-local-class2.C +new file mode 100644 +index 00000000000..83856de1f41 +--- /dev/null ++++ b/gcc/testsuite/g++.dg/cpp1y/lambda-generic-local-class2.C +@@ -0,0 +1,13 @@ ++// PR c++/109241 ++// { dg-do compile { target c++14 } } ++// { dg-options "" } no pedantic ++ ++void g() { ++ [](auto) { ++ [](auto) { ++ ({ ++ struct A {}; ++ }); ++ }; ++ }(1); ++} +-- +2.40.1 + diff --git a/pkgs/development/compilers/gcc/13/Added-mcf-thread-model-support-from-mcfgthread.patch b/pkgs/development/compilers/gcc/13/Added-mcf-thread-model-support-from-mcfgthread.patch deleted file mode 100644 index 77202438e47d8..0000000000000 --- a/pkgs/development/compilers/gcc/13/Added-mcf-thread-model-support-from-mcfgthread.patch +++ /dev/null @@ -1,306 +0,0 @@ -From 86f2f767ddffd9f7c6f1470b987ae7b0d251b988 Mon Sep 17 00:00:00 2001 -From: Liu Hao <lh_mouse@126.com> -Date: Wed, 25 Apr 2018 21:54:19 +0800 -Subject: [PATCH] Added 'mcf' thread model support from mcfgthread. - -Signed-off-by: Liu Hao <lh_mouse@126.com> ---- - config/gthr.m4 | 1 + - gcc/config.gcc | 3 +++ - gcc/config/i386/mingw-mcfgthread.h | 1 + - gcc/config/i386/mingw-w64.h | 2 +- - gcc/config/i386/mingw32.h | 11 ++++++++++- - gcc/configure | 2 +- - gcc/configure.ac | 2 +- - libatomic/configure.tgt | 2 +- - libgcc/config.host | 6 ++++++ - libgcc/config/i386/gthr-mcf.h | 1 + - libgcc/config/i386/t-mingw-mcfgthread | 2 ++ - libgcc/configure | 1 + - libstdc++-v3/configure | 1 + - libstdc++-v3/libsupc++/atexit_thread.cc | 18 ++++++++++++++++++ - libstdc++-v3/libsupc++/guard.cc | 23 +++++++++++++++++++++++ - libstdc++-v3/src/c++11/thread.cc | 9 +++++++++ - 16 files changed, 80 insertions(+), 5 deletions(-) - create mode 100644 gcc/config/i386/mingw-mcfgthread.h - create mode 100644 libgcc/config/i386/gthr-mcf.h - create mode 100644 libgcc/config/i386/t-mingw-mcfgthread - -diff --git a/config/gthr.m4 b/config/gthr.m4 -index 7b29f1f3327..82e21fe1709 100644 ---- a/config/gthr.m4 -+++ b/config/gthr.m4 -@@ -21,6 +21,7 @@ case $1 in - tpf) thread_header=config/s390/gthr-tpf.h ;; - vxworks) thread_header=config/gthr-vxworks.h ;; - win32) thread_header=config/i386/gthr-win32.h ;; -+ mcf) thread_header=config/i386/gthr-mcf.h ;; - esac - AC_SUBST(thread_header) - ]) -diff --git a/gcc/config.gcc b/gcc/config.gcc -index 46a9029acec..112c24e95a3 100644 ---- a/gcc/config.gcc -+++ b/gcc/config.gcc -@@ -1758,6 +1758,9 @@ i[34567]86-*-mingw* | x86_64-*-mingw*) - if test x$enable_threads = xposix ; then - tm_file="${tm_file} i386/mingw-pthread.h" - fi -+ if test x$enable_threads = xmcf ; then -+ tm_file="${tm_file} i386/mingw-mcfgthread.h" -+ fi - tm_file="${tm_file} i386/mingw32.h" - # This makes the logic if mingw's or the w64 feature set has to be used - case ${target} in -diff --git a/gcc/config/i386/mingw-mcfgthread.h b/gcc/config/i386/mingw-mcfgthread.h -new file mode 100644 -index 00000000000..ec381a7798f ---- /dev/null -+++ b/gcc/config/i386/mingw-mcfgthread.h -@@ -0,0 +1 @@ -+#define TARGET_USE_MCFGTHREAD 1 -diff --git a/gcc/config/i386/mingw-w64.h b/gcc/config/i386/mingw-w64.h -index 484dc7a9e9f..a15bbeea500 100644 ---- a/gcc/config/i386/mingw-w64.h -+++ b/gcc/config/i386/mingw-w64.h -@@ -48,7 +48,7 @@ along with GCC; see the file COPYING3. If not see - "%{mwindows:-lgdi32 -lcomdlg32} " \ - "%{fvtable-verify=preinit:-lvtv -lpsapi; \ - fvtable-verify=std:-lvtv -lpsapi} " \ -- "-ladvapi32 -lshell32 -luser32 -lkernel32" -+ LIB_MCFGTHREAD "-ladvapi32 -lshell32 -luser32 -lkernel32" - - #undef SPEC_32 - #undef SPEC_64 -diff --git a/gcc/config/i386/mingw32.h b/gcc/config/i386/mingw32.h -index 0612b87199a..76cea94f3b7 100644 ---- a/gcc/config/i386/mingw32.h -+++ b/gcc/config/i386/mingw32.h -@@ -32,6 +32,14 @@ along with GCC; see the file COPYING3. If not see - | MASK_STACK_PROBE | MASK_ALIGN_DOUBLE \ - | MASK_MS_BITFIELD_LAYOUT) - -+#ifndef TARGET_USE_MCFGTHREAD -+#define CPP_MCFGTHREAD() ((void)0) -+#define LIB_MCFGTHREAD "" -+#else -+#define CPP_MCFGTHREAD() (builtin_define("__USING_MCFGTHREAD__")) -+#define LIB_MCFGTHREAD " -lmcfgthread " -+#endif -+ - /* See i386/crtdll.h for an alternative definition. _INTEGRAL_MAX_BITS - is for compatibility with native compiler. */ - #define EXTRA_OS_CPP_BUILTINS() \ -@@ -50,6 +58,7 @@ along with GCC; see the file COPYING3. If not see - builtin_define_std ("WIN64"); \ - builtin_define ("_WIN64"); \ - } \ -+ CPP_MCFGTHREAD(); \ - } \ - while (0) - -@@ -93,7 +102,7 @@ along with GCC; see the file COPYING3. If not see - "%{mwindows:-lgdi32 -lcomdlg32} " \ - "%{fvtable-verify=preinit:-lvtv -lpsapi; \ - fvtable-verify=std:-lvtv -lpsapi} " \ -- "-ladvapi32 -lshell32 -luser32 -lkernel32" -+ LIB_MCFGTHREAD "-ladvapi32 -lshell32 -luser32 -lkernel32" - - /* Weak symbols do not get resolved if using a Windows dll import lib. - Make the unwind registration references strong undefs. */ -diff --git a/gcc/configure b/gcc/configure -index 6121e163259..52f0e00efe6 100755 ---- a/gcc/configure -+++ b/gcc/configure -@@ -11693,7 +11693,7 @@ case ${enable_threads} in - target_thread_file='single' - ;; - aix | dce | lynx | mipssde | posix | rtems | \ -- single | tpf | vxworks | win32) -+ single | tpf | vxworks | win32 | mcf) - target_thread_file=${enable_threads} - ;; - *) -diff --git a/gcc/configure.ac b/gcc/configure.ac -index b066cc609e1..4ecdba88de7 100644 ---- a/gcc/configure.ac -+++ b/gcc/configure.ac -@@ -1612,7 +1612,7 @@ case ${enable_threads} in - target_thread_file='single' - ;; - aix | dce | lynx | mipssde | posix | rtems | \ -- single | tpf | vxworks | win32) -+ single | tpf | vxworks | win32 | mcf) - target_thread_file=${enable_threads} - ;; - *) -diff --git a/libatomic/configure.tgt b/libatomic/configure.tgt -index ea8c34f8c71..23134ad7363 100644 ---- a/libatomic/configure.tgt -+++ b/libatomic/configure.tgt -@@ -145,7 +145,7 @@ case "${target}" in - *-*-mingw*) - # OS support for atomic primitives. - case ${target_thread_file} in -- win32) -+ win32 | mcf) - config_path="${config_path} mingw" - ;; - posix) -diff --git a/libgcc/config.host b/libgcc/config.host -index 11b4acaff55..9fbd38650bd 100644 ---- a/libgcc/config.host -+++ b/libgcc/config.host -@@ -737,6 +737,9 @@ i[34567]86-*-mingw*) - posix) - tmake_file="i386/t-mingw-pthread $tmake_file" - ;; -+ mcf) -+ tmake_file="i386/t-mingw-mcfgthread $tmake_file" -+ ;; - esac - # This has to match the logic for DWARF2_UNWIND_INFO in gcc/config/i386/cygming.h - if test x$ac_cv_sjlj_exceptions = xyes; then -@@ -761,6 +764,9 @@ x86_64-*-mingw*) - posix) - tmake_file="i386/t-mingw-pthread $tmake_file" - ;; -+ mcf) -+ tmake_file="i386/t-mingw-mcfgthread $tmake_file" -+ ;; - esac - # This has to match the logic for DWARF2_UNWIND_INFO in gcc/config/i386/cygming.h - if test x$ac_cv_sjlj_exceptions = xyes; then -diff --git a/libgcc/config/i386/gthr-mcf.h b/libgcc/config/i386/gthr-mcf.h -new file mode 100644 -index 00000000000..5ea2908361f ---- /dev/null -+++ b/libgcc/config/i386/gthr-mcf.h -@@ -0,0 +1 @@ -+#include <mcfgthread/gthread.h> -diff --git a/libgcc/config/i386/t-mingw-mcfgthread b/libgcc/config/i386/t-mingw-mcfgthread -new file mode 100644 -index 00000000000..4b9b10e32d6 ---- /dev/null -+++ b/libgcc/config/i386/t-mingw-mcfgthread -@@ -0,0 +1,2 @@ -+SHLIB_PTHREAD_CFLAG = -+SHLIB_PTHREAD_LDFLAG = -lmcfgthread -diff --git a/libgcc/configure b/libgcc/configure -index b2f3f870844..eff889dc3b3 100644 ---- a/libgcc/configure -+++ b/libgcc/configure -@@ -5451,6 +5451,7 @@ case $target_thread_file in - tpf) thread_header=config/s390/gthr-tpf.h ;; - vxworks) thread_header=config/gthr-vxworks.h ;; - win32) thread_header=config/i386/gthr-win32.h ;; -+ mcf) thread_header=config/i386/gthr-mcf.h ;; - esac - - -diff --git a/libstdc++-v3/configure b/libstdc++-v3/configure -index ba094be6f15..979a5ab9ace 100755 ---- a/libstdc++-v3/configure -+++ b/libstdc++-v3/configure -@@ -15187,6 +15187,7 @@ case $target_thread_file in - tpf) thread_header=config/s390/gthr-tpf.h ;; - vxworks) thread_header=config/gthr-vxworks.h ;; - win32) thread_header=config/i386/gthr-win32.h ;; -+ mcf) thread_header=config/i386/gthr-mcf.h ;; - esac - - -diff --git a/libstdc++-v3/libsupc++/atexit_thread.cc b/libstdc++-v3/libsupc++/atexit_thread.cc -index de920d714c6..665fb74bd6b 100644 ---- a/libstdc++-v3/libsupc++/atexit_thread.cc -+++ b/libstdc++-v3/libsupc++/atexit_thread.cc -@@ -25,6 +25,22 @@ - #include <cstdlib> - #include <new> - #include "bits/gthr.h" -+ -+#ifdef __USING_MCFGTHREAD__ -+ -+#include <mcfgthread/gthread.h> -+namespace __cxxabiv1 { -+extern "C" int -+__cxa_thread_atexit (void (_GLIBCXX_CDTOR_CALLABI *dtor)(void *), -+ void *obj, void *dso_handle) -+ _GLIBCXX_NOTHROW -+{ -+ return ::_MCFCRT_AtThreadExit((void (*)(_MCFCRT_STD intptr_t))dtor, (_MCFCRT_STD intptr_t)obj) ? 0 : -1; -+ (void)dso_handle; -+} -+} -+#else // __USING_MCFGTHREAD__ -+ - #ifdef _GLIBCXX_THREAD_ATEXIT_WIN32 - #define WIN32_LEAN_AND_MEAN - #include <windows.h> -@@ -167,3 +183,5 @@ __cxxabiv1::__cxa_thread_atexit (void (*dtor)(void *), void *obj, void */*dso_ha - } - - #endif /* _GLIBCXX_HAVE___CXA_THREAD_ATEXIT_IMPL */ -+ -+#endif // __USING_MCFGTHREAD__ -diff --git a/libstdc++-v3/libsupc++/guard.cc b/libstdc++-v3/libsupc++/guard.cc -index 3a2ec3ad0d6..8b4cc96199b 100644 ---- a/libstdc++-v3/libsupc++/guard.cc -+++ b/libstdc++-v3/libsupc++/guard.cc -@@ -28,6 +28,27 @@ - #include <cxxabi.h> - #include <exception> - #include <new> -+ -+#ifdef __USING_MCFGTHREAD__ -+ -+#include <mcfgthread/gthread.h> -+ -+namespace __cxxabiv1 { -+ -+extern "C" int __cxa_guard_acquire(__guard *g){ -+ return ::_MCFCRT_WaitForOnceFlagForever((::_MCFCRT_OnceFlag *)g) == ::_MCFCRT_kOnceResultInitial; -+} -+extern "C" void __cxa_guard_abort(__guard *g) throw() { -+ ::_MCFCRT_SignalOnceFlagAsAborted((::_MCFCRT_OnceFlag *)g); -+} -+extern "C" void __cxa_guard_release(__guard *g) throw() { -+ ::_MCFCRT_SignalOnceFlagAsFinished((::_MCFCRT_OnceFlag *)g); -+} -+ -+} -+ -+#else // __USING_MCFGTHREAD__ -+ - #include <ext/atomicity.h> - #include <ext/concurrence.h> - #include <bits/atomic_lockfree_defines.h> -@@ -425,3 +446,5 @@ namespace __cxxabiv1 - #endif - } - } -+ -+#endif -diff --git a/libstdc++-v3/src/c++11/thread.cc b/libstdc++-v3/src/c++11/thread.cc -index 8238817c2e9..0c6a1f85f6f 100644 ---- a/libstdc++-v3/src/c++11/thread.cc -+++ b/libstdc++-v3/src/c++11/thread.cc -@@ -55,6 +55,15 @@ static inline int get_nprocs() - #elif defined(_GLIBCXX_USE_SC_NPROC_ONLN) - # include <unistd.h> - # define _GLIBCXX_NPROCS sysconf(_SC_NPROC_ONLN) -+#elif defined(_WIN32) -+# include <windows.h> -+static inline int get_nprocs() -+{ -+ SYSTEM_INFO sysinfo; -+ GetSystemInfo(&sysinfo); -+ return (int)sysinfo.dwNumberOfProcessors; -+} -+# define _GLIBCXX_NPROCS get_nprocs() - #else - # define _GLIBCXX_NPROCS 0 - #endif --- -2.17.0 - diff --git a/pkgs/development/compilers/gcc/13/default.nix b/pkgs/development/compilers/gcc/13/default.nix index 230910c194025..4273195e71823 100644 --- a/pkgs/development/compilers/gcc/13/default.nix +++ b/pkgs/development/compilers/gcc/13/default.nix @@ -121,9 +121,7 @@ let majorVersion = "13"; # Use absolute path in GNAT dylib install names on Darwin ++ optional (stdenv.isDarwin && langAda) ../gnat-darwin-dylib-install-name.patch - - # Obtain latest patch with ../update-mcfgthread-patches.sh - ++ optional (!crossStageStatic && targetPlatform.isMinGW && threadsCross.model == "mcf") ./Added-mcf-thread-model-support-from-mcfgthread.patch; + ; /* Cross-gcc settings (build == host != target) */ crossMingw = targetPlatform != hostPlatform && targetPlatform.libc == "msvcrt"; diff --git a/pkgs/development/compilers/gcc/common/pre-configure.nix b/pkgs/development/compilers/gcc/common/pre-configure.nix index 406e3cfb7af56..4a631f07d5b27 100644 --- a/pkgs/development/compilers/gcc/common/pre-configure.nix +++ b/pkgs/development/compilers/gcc/common/pre-configure.nix @@ -77,8 +77,12 @@ in lib.optionalString (hostPlatform.isSunOS && hostPlatform.is64bit) '' # - If GCC allowed implicit declaration of symbols, it would not fail during # compilation even if the configure scripts did not check header presence. # -+ lib.optionalString (hostPlatform.isDarwin) '' - export ac_cv_func_aligned_alloc=no ++ lib.optionalString (buildPlatform.isDarwin) '' + export build_configargs=ac_cv_func_aligned_alloc=no +'' + lib.optionalString (hostPlatform.isDarwin) '' + export host_configargs=ac_cv_func_aligned_alloc=no +'' + lib.optionalString (targetPlatform.isDarwin) '' + export target_configargs=ac_cv_func_aligned_alloc=no '' # In order to properly install libgccjit on macOS Catalina, strip(1) diff --git a/pkgs/development/compilers/ghc/9.2.8.nix b/pkgs/development/compilers/ghc/9.2.8.nix new file mode 100644 index 0000000000000..13e787df8e4ae --- /dev/null +++ b/pkgs/development/compilers/ghc/9.2.8.nix @@ -0,0 +1,391 @@ +{ lib, stdenv, pkgsBuildTarget, pkgsHostTarget, targetPackages + +# build-tools +, bootPkgs +, autoconf, automake, coreutils, fetchpatch, fetchurl, perl, python3, m4, sphinx +, xattr, autoSignDarwinBinariesHook +, bash + +, libiconv ? null, ncurses +, glibcLocales ? null + +, # GHC can be built with system libffi or a bundled one. + libffi ? null + +, useLLVM ? !(stdenv.targetPlatform.isx86 + || stdenv.targetPlatform.isPower + || stdenv.targetPlatform.isSparc + || (stdenv.targetPlatform.isAarch64 && stdenv.targetPlatform.isDarwin)) +, # LLVM is conceptually a run-time-only dependency, but for + # non-x86, we need LLVM to bootstrap later stages, so it becomes a + # build-time dependency too. + buildTargetLlvmPackages, llvmPackages + +, # If enabled, GHC will be built with the GPL-free but slightly slower native + # bignum backend instead of the faster but GPLed gmp backend. + enableNativeBignum ? !(lib.meta.availableOn stdenv.hostPlatform gmp + && lib.meta.availableOn stdenv.targetPlatform gmp) +, gmp + +, # If enabled, use -fPIC when compiling static libs. + enableRelocatedStaticLibs ? stdenv.targetPlatform != stdenv.hostPlatform + + # aarch64 outputs otherwise exceed 2GB limit +, enableProfiledLibs ? !stdenv.targetPlatform.isAarch64 + +, # Whether to build dynamic libs for the standard library (on the target + # platform). Static libs are always built. + enableShared ? with stdenv.targetPlatform; !isWindows && !useiOSPrebuilt && !isStatic + +, # Whether to build terminfo. + enableTerminfo ? !stdenv.targetPlatform.isWindows + +, # What flavour to build. An empty string indicates no + # specific flavour and falls back to ghc default values. + ghcFlavour ? lib.optionalString (stdenv.targetPlatform != stdenv.hostPlatform) + (if useLLVM then "perf-cross" else "perf-cross-ncg") + +, # Whether to build sphinx documentation. + enableDocs ? ( + # Docs disabled for musl and cross because it's a large task to keep + # all `sphinx` dependencies building in those environments. + # `sphinx` pulls in among others: + # Ruby, Python, Perl, Rust, OpenGL, Xorg, gtk, LLVM. + (stdenv.targetPlatform == stdenv.hostPlatform) + && !stdenv.hostPlatform.isMusl + ) + +, enableHaddockProgram ? + # Disabled for cross; see note [HADDOCK_DOCS]. + (stdenv.targetPlatform == stdenv.hostPlatform) + +, # Whether to disable the large address space allocator + # necessary fix for iOS: https://www.reddit.com/r/haskell/comments/4ttdz1/building_an_osxi386_to_iosarm64_cross_compiler/d5qvd67/ + disableLargeAddressSpace ? stdenv.targetPlatform.isiOS +}: + +assert !enableNativeBignum -> gmp != null; + +# Cross cannot currently build the `haddock` program for silly reasons, +# see note [HADDOCK_DOCS]. +assert (stdenv.targetPlatform != stdenv.hostPlatform) -> !enableHaddockProgram; + +let + inherit (stdenv) buildPlatform hostPlatform targetPlatform; + + inherit (bootPkgs) ghc; + + # TODO(@Ericson2314) Make unconditional + targetPrefix = lib.optionalString + (targetPlatform != hostPlatform) + "${targetPlatform.config}-"; + + buildMK = '' + BuildFlavour = ${ghcFlavour} + ifneq \"\$(BuildFlavour)\" \"\" + include mk/flavours/\$(BuildFlavour).mk + endif + BUILD_SPHINX_HTML = ${if enableDocs then "YES" else "NO"} + BUILD_SPHINX_PDF = NO + '' + + # Note [HADDOCK_DOCS]: + # Unfortunately currently `HADDOCK_DOCS` controls both whether the `haddock` + # program is built (which we generally always want to have a complete GHC install) + # and whether it is run on the GHC sources to generate hyperlinked source code + # (which is impossible for cross-compilation); see: + # https://gitlab.haskell.org/ghc/ghc/-/issues/20077 + # This implies that currently a cross-compiled GHC will never have a `haddock` + # program, so it can never generate haddocks for any packages. + # If this is solved in the future, we'd like to unconditionally + # build the haddock program (removing the `enableHaddockProgram` option). + '' + HADDOCK_DOCS = ${if enableHaddockProgram then "YES" else "NO"} + # Build haddocks for boot packages with hyperlinking + EXTRA_HADDOCK_OPTS += --hyperlinked-source --quickjump + + DYNAMIC_GHC_PROGRAMS = ${if enableShared then "YES" else "NO"} + BIGNUM_BACKEND = ${if enableNativeBignum then "native" else "gmp"} + '' + lib.optionalString (targetPlatform != hostPlatform) '' + Stage1Only = ${if targetPlatform.system == hostPlatform.system then "NO" else "YES"} + CrossCompilePrefix = ${targetPrefix} + '' + lib.optionalString (!enableProfiledLibs) '' + GhcLibWays = "v dyn" + '' + + # -fexternal-dynamic-refs apparently (because it's not clear from the documentation) + # makes the GHC RTS able to load static libraries, which may be needed for TemplateHaskell. + # This solution was described in https://www.tweag.io/blog/2020-09-30-bazel-static-haskell + lib.optionalString enableRelocatedStaticLibs '' + GhcLibHcOpts += -fPIC -fexternal-dynamic-refs + GhcRtsHcOpts += -fPIC -fexternal-dynamic-refs + '' + lib.optionalString targetPlatform.useAndroidPrebuilt '' + EXTRA_CC_OPTS += -std=gnu99 + ''; + + # Splicer will pull out correct variations + libDeps = platform: lib.optional enableTerminfo ncurses + ++ [libffi] + ++ lib.optional (!enableNativeBignum) gmp + ++ lib.optional (platform.libc != "glibc" && !targetPlatform.isWindows) libiconv; + + # TODO(@sternenseemann): is buildTarget LLVM unnecessary? + # GHC doesn't seem to have {LLC,OPT}_HOST + toolsForTarget = [ + pkgsBuildTarget.targetPackages.stdenv.cc + ] ++ lib.optional useLLVM buildTargetLlvmPackages.llvm; + + targetCC = builtins.head toolsForTarget; + + # Sometimes we have to dispatch between the bintools wrapper and the unwrapped + # derivation for certain tools depending on the platform. + bintoolsFor = { + # GHC needs install_name_tool on all darwin platforms. On aarch64-darwin it is + # part of the bintools wrapper (due to codesigning requirements), but not on + # x86_64-darwin. + install_name_tool = + if stdenv.targetPlatform.isAarch64 + then targetCC.bintools + else targetCC.bintools.bintools; + # Same goes for strip. + strip = + # TODO(@sternenseemann): also use wrapper if linker == "bfd" or "gold" + if stdenv.targetPlatform.isAarch64 && stdenv.targetPlatform.isDarwin + then targetCC.bintools + else targetCC.bintools.bintools; + }; + + # Use gold either following the default, or to avoid the BFD linker due to some bugs / perf issues. + # But we cannot avoid BFD when using musl libc due to https://sourceware.org/bugzilla/show_bug.cgi?id=23856 + # see #84670 and #49071 for more background. + useLdGold = targetPlatform.linker == "gold" || + (targetPlatform.linker == "bfd" && (targetCC.bintools.bintools.hasGold or false) && !targetPlatform.isMusl); + + # Makes debugging easier to see which variant is at play in `nix-store -q --tree`. + variantSuffix = lib.concatStrings [ + (lib.optionalString stdenv.hostPlatform.isMusl "-musl") + (lib.optionalString enableNativeBignum "-native-bignum") + ]; + +in + +# C compiler, bintools and LLVM are used at build time, but will also leak into +# the resulting GHC's settings file and used at runtime. This means that we are +# currently only able to build GHC if hostPlatform == buildPlatform. +assert targetCC == pkgsHostTarget.targetPackages.stdenv.cc; +assert buildTargetLlvmPackages.llvm == llvmPackages.llvm; +assert stdenv.targetPlatform.isDarwin -> buildTargetLlvmPackages.clang == llvmPackages.clang; + +stdenv.mkDerivation (rec { + version = "9.2.8"; + pname = "${targetPrefix}ghc${variantSuffix}"; + + src = fetchurl { + url = "https://downloads.haskell.org/ghc/${version}/ghc-${version}-src.tar.xz"; + sha256 = "sha256-XxPReGv0/RL0tF+qN6vttbs/NtXlj32lMH6L/oilZ6E="; + }; + + enableParallelBuilding = true; + + outputs = [ "out" "doc" ]; + + patches = [ + # Fix docs build with sphinx >= 6.0 + # https://gitlab.haskell.org/ghc/ghc/-/issues/22766 + (fetchpatch { + name = "ghc-docs-sphinx-6.0.patch"; + url = "https://gitlab.haskell.org/ghc/ghc/-/commit/10e94a556b4f90769b7fd718b9790d58ae566600.patch"; + sha256 = "0kmhfamr16w8gch0lgln2912r8aryjky1hfcda3jkcwa5cdzgjdv"; + }) + # fix hyperlinked haddock sources: https://github.com/haskell/haddock/pull/1482 + (fetchpatch { + url = "https://patch-diff.githubusercontent.com/raw/haskell/haddock/pull/1482.patch"; + sha256 = "sha256-8w8QUCsODaTvknCDGgTfFNZa8ZmvIKaKS+2ZJZ9foYk="; + extraPrefix = "utils/haddock/"; + stripLen = 1; + }) + # Don't generate code that doesn't compile when --enable-relocatable is passed to Setup.hs + # Can be removed if the Cabal library included with ghc backports the linked fix + (fetchpatch { + url = "https://github.com/haskell/cabal/commit/6c796218c92f93c95e94d5ec2d077f6956f68e98.patch"; + stripLen = 1; + extraPrefix = "libraries/Cabal/"; + sha256 = "sha256-yRQ6YmMiwBwiYseC5BsrEtDgFbWvst+maGgDtdD0vAY="; + }) + ] ++ lib.optionals (stdenv.targetPlatform.isDarwin && stdenv.targetPlatform.isAarch64) [ + # Prevent the paths module from emitting symbols that we don't use + # when building with separate outputs. + # + # These cause problems as they're not eliminated by GHC's dead code + # elimination on aarch64-darwin. (see + # https://github.com/NixOS/nixpkgs/issues/140774 for details). + ./Cabal-3.6-paths-fix-cycle-aarch64-darwin.patch + ]; + + postPatch = "patchShebangs ."; + + # GHC needs the locale configured during the Haddock phase. + LANG = "en_US.UTF-8"; + + # GHC is a bit confused on its cross terminology. + # TODO(@sternenseemann): investigate coreutils dependencies and pass absolute paths + preConfigure = '' + for env in $(env | grep '^TARGET_' | sed -E 's|\+?=.*||'); do + export "''${env#TARGET_}=''${!env}" + done + # GHC is a bit confused on its cross terminology, as these would normally be + # the *host* tools. + export CC="${targetCC}/bin/${targetCC.targetPrefix}cc" + export CXX="${targetCC}/bin/${targetCC.targetPrefix}c++" + # Use gold to work around https://sourceware.org/bugzilla/show_bug.cgi?id=16177 + export LD="${targetCC.bintools}/bin/${targetCC.bintools.targetPrefix}ld${lib.optionalString useLdGold ".gold"}" + export AS="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}as" + export AR="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ar" + export NM="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}nm" + export RANLIB="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ranlib" + export READELF="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}readelf" + export STRIP="${bintoolsFor.strip}/bin/${bintoolsFor.strip.targetPrefix}strip" + '' + lib.optionalString (stdenv.targetPlatform.linker == "cctools") '' + export OTOOL="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}otool" + export INSTALL_NAME_TOOL="${bintoolsFor.install_name_tool}/bin/${bintoolsFor.install_name_tool.targetPrefix}install_name_tool" + '' + lib.optionalString useLLVM '' + export LLC="${lib.getBin buildTargetLlvmPackages.llvm}/bin/llc" + export OPT="${lib.getBin buildTargetLlvmPackages.llvm}/bin/opt" + '' + lib.optionalString (useLLVM && stdenv.targetPlatform.isDarwin) '' + # LLVM backend on Darwin needs clang: https://downloads.haskell.org/~ghc/latest/docs/html/users_guide/codegens.html#llvm-code-generator-fllvm + export CLANG="${buildTargetLlvmPackages.clang}/bin/${buildTargetLlvmPackages.clang.targetPrefix}clang" + '' + '' + echo -n "${buildMK}" > mk/build.mk + '' + lib.optionalString (stdenv.isLinux && hostPlatform.libc == "glibc") '' + export LOCALE_ARCHIVE="${glibcLocales}/lib/locale/locale-archive" + '' + lib.optionalString (!stdenv.isDarwin) '' + export NIX_LDFLAGS+=" -rpath $out/lib/ghc-${version}" + '' + lib.optionalString stdenv.isDarwin '' + export NIX_LDFLAGS+=" -no_dtrace_dof" + + # GHC tries the host xattr /usr/bin/xattr by default which fails since it expects python to be 2.7 + export XATTR=${lib.getBin xattr}/bin/xattr + '' + lib.optionalString targetPlatform.useAndroidPrebuilt '' + sed -i -e '5i ,("armv7a-unknown-linux-androideabi", ("e-m:e-p:32:32-i64:64-v128:64:128-a:0:32-n32-S64", "cortex-a8", ""))' llvm-targets + '' + lib.optionalString targetPlatform.isMusl '' + echo "patching llvm-targets for musl targets..." + echo "Cloning these existing '*-linux-gnu*' targets:" + grep linux-gnu llvm-targets | sed 's/^/ /' + echo "(go go gadget sed)" + sed -i 's,\(^.*linux-\)gnu\(.*\)$,\0\n\1musl\2,' llvm-targets + echo "llvm-targets now contains these '*-linux-musl*' targets:" + grep linux-musl llvm-targets | sed 's/^/ /' + + echo "And now patching to preserve '-musleabi' as done with '-gnueabi'" + # (aclocal.m4 is actual source, but patch configure as well since we don't re-gen) + for x in configure aclocal.m4; do + substituteInPlace $x \ + --replace '*-android*|*-gnueabi*)' \ + '*-android*|*-gnueabi*|*-musleabi*)' + done + ''; + + # TODO(@Ericson2314): Always pass "--target" and always prefix. + configurePlatforms = [ "build" "host" ] + ++ lib.optional (targetPlatform != hostPlatform) "target"; + + # `--with` flags for libraries needed for RTS linker + configureFlags = [ + "--datadir=$doc/share/doc/ghc" + "--with-curses-includes=${ncurses.dev}/include" "--with-curses-libraries=${ncurses.out}/lib" + ] ++ lib.optionals (libffi != null) [ + "--with-system-libffi" + "--with-ffi-includes=${targetPackages.libffi.dev}/include" + "--with-ffi-libraries=${targetPackages.libffi.out}/lib" + ] ++ lib.optionals (targetPlatform == hostPlatform && !enableNativeBignum) [ + "--with-gmp-includes=${targetPackages.gmp.dev}/include" + "--with-gmp-libraries=${targetPackages.gmp.out}/lib" + ] ++ lib.optionals (targetPlatform == hostPlatform && hostPlatform.libc != "glibc" && !targetPlatform.isWindows) [ + "--with-iconv-includes=${libiconv}/include" + "--with-iconv-libraries=${libiconv}/lib" + ] ++ lib.optionals (targetPlatform != hostPlatform) [ + "--enable-bootstrap-with-devel-snapshot" + ] ++ lib.optionals useLdGold [ + "CFLAGS=-fuse-ld=gold" + "CONF_GCC_LINKER_OPTS_STAGE1=-fuse-ld=gold" + "CONF_GCC_LINKER_OPTS_STAGE2=-fuse-ld=gold" + ] ++ lib.optionals (disableLargeAddressSpace) [ + "--disable-large-address-space" + ]; + + # Make sure we never relax`$PATH` and hooks support for compatibility. + strictDeps = true; + + # Don’t add -liconv to LDFLAGS automatically so that GHC will add it itself. + dontAddExtraLibs = true; + + nativeBuildInputs = [ + perl autoconf automake m4 python3 + ghc bootPkgs.alex bootPkgs.happy bootPkgs.hscolour + ] ++ lib.optionals (stdenv.isDarwin && stdenv.isAarch64) [ + autoSignDarwinBinariesHook + ] ++ lib.optionals enableDocs [ + sphinx + ]; + + # For building runtime libs + depsBuildTarget = toolsForTarget; + + buildInputs = [ perl bash ] ++ (libDeps hostPlatform); + + depsTargetTarget = map lib.getDev (libDeps targetPlatform); + depsTargetTargetPropagated = map (lib.getOutput "out") (libDeps targetPlatform); + + # required, because otherwise all symbols from HSffi.o are stripped, and + # that in turn causes GHCi to abort + stripDebugFlags = [ "-S" ] ++ lib.optional (!targetPlatform.isDarwin) "--keep-file-symbols"; + + checkTarget = "test"; + + hardeningDisable = + [ "format" ] + # In nixpkgs, musl based builds currently enable `pie` hardening by default + # (see `defaultHardeningFlags` in `make-derivation.nix`). + # But GHC cannot currently produce outputs that are ready for `-pie` linking. + # Thus, disable `pie` hardening, otherwise `recompile with -fPIE` errors appear. + # See: + # * https://github.com/NixOS/nixpkgs/issues/129247 + # * https://gitlab.haskell.org/ghc/ghc/-/issues/19580 + ++ lib.optional stdenv.targetPlatform.isMusl "pie"; + + # big-parallel allows us to build with more than 2 cores on + # Hydra which already warrants a significant speedup + requiredSystemFeatures = [ "big-parallel" ]; + + postInstall = '' + # Install the bash completion file. + install -D -m 444 utils/completion/ghc.bash $out/share/bash-completion/completions/${targetPrefix}ghc + ''; + + passthru = { + inherit bootPkgs targetPrefix; + + inherit llvmPackages; + inherit enableShared; + + # This is used by the haskell builder to query + # the presence of the haddock program. + hasHaddock = enableHaddockProgram; + + # Our Cabal compiler name + haskellCompilerName = "ghc-${version}"; + }; + + meta = { + homepage = "http://haskell.org/ghc"; + description = "The Glasgow Haskell Compiler"; + maintainers = with lib.maintainers; [ + guibou + ] ++ lib.teams.haskell.members; + timeout = 24 * 3600; + inherit (ghc.meta) license platforms; + }; + +} // lib.optionalAttrs targetPlatform.useAndroidPrebuilt { + dontStrip = true; + dontPatchELF = true; + noAuditTmpdir = true; +}) diff --git a/pkgs/development/compilers/ghc/9.6.2.nix b/pkgs/development/compilers/ghc/9.6.2.nix new file mode 100644 index 0000000000000..a0f764d016b56 --- /dev/null +++ b/pkgs/development/compilers/ghc/9.6.2.nix @@ -0,0 +1,4 @@ +import ./common-hadrian.nix rec { + version = "9.6.2"; + sha256 = "1b510c5f8753c3ba24851702c6c9da7d81dc5e47fe3ecb7af39c7c2613abf170"; +} diff --git a/pkgs/development/compilers/inform6/default.nix b/pkgs/development/compilers/inform6/default.nix index da580f3c53ebc..e22d279fd9f2f 100644 --- a/pkgs/development/compilers/inform6/default.nix +++ b/pkgs/development/compilers/inform6/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "inform6"; - version = "6.41-r4"; + version = "6.41-r5"; src = fetchurl { url = "https://ifarchive.org/if-archive/infocom/compilers/inform6/source/inform-${version}.tar.gz"; - sha256 = "sha256-y55F/zV/99fS4ZITtPsSgkpMNfonFztZEP/QZxSQjfc="; + sha256 = "sha256-JsLufRmqUmJ4if1XURi9swS0upw+Hj827T27A9qDANg="; }; buildInputs = [ perl ]; diff --git a/pkgs/development/compilers/jasmin-compiler/default.nix b/pkgs/development/compilers/jasmin-compiler/default.nix index 7cd19ca854388..4ff706087cefd 100644 --- a/pkgs/development/compilers/jasmin-compiler/default.nix +++ b/pkgs/development/compilers/jasmin-compiler/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "jasmin-compiler"; - version = "2022.09.2"; + version = "2022.09.3"; src = fetchurl { url = "https://github.com/jasmin-lang/jasmin/releases/download/v${version}/jasmin-compiler-v${version}.tar.bz2"; - hash = "sha256-CGKaFR9Ax0O7BaW42DwYS4Air7zo5fOY2ExHkMGdtqo="; + hash = "sha256-CCLUF3GDeQrWIur1ve19WveNiOR/6kRVWuU7wvmXGGg="; }; sourceRoot = "jasmin-compiler-v${version}/compiler"; diff --git a/pkgs/development/compilers/llvm/16/compiler-rt/default.nix b/pkgs/development/compilers/llvm/16/compiler-rt/default.nix index 3666f291c321c..e2b8d470f8909 100644 --- a/pkgs/development/compilers/llvm/16/compiler-rt/default.nix +++ b/pkgs/development/compilers/llvm/16/compiler-rt/default.nix @@ -97,8 +97,6 @@ stdenv.mkDerivation { substituteInPlace cmake/builtin-config-ix.cmake \ --replace 'set(X86 i386)' 'set(X86 i386 i486 i586 i686)' '' + lib.optionalString stdenv.isDarwin '' - substituteInPlace cmake/builtin-config-ix.cmake \ - --replace 'set(ARM64 arm64 arm64e)' 'set(ARM64)' substituteInPlace cmake/config-ix.cmake \ --replace 'set(COMPILER_RT_HAS_TSAN TRUE)' 'set(COMPILER_RT_HAS_TSAN FALSE)' '' + lib.optionalString (useLLVM) '' diff --git a/pkgs/development/compilers/mozart/default.nix b/pkgs/development/compilers/mozart/default.nix index 8f68487ecf701..521ae2a9b22c5 100644 --- a/pkgs/development/compilers/mozart/default.nix +++ b/pkgs/development/compilers/mozart/default.nix @@ -1,11 +1,10 @@ { lib -, fetchFromGitHub , fetchurl +, fetchpatch , cmake , unzip , makeWrapper -, boost169 -, pinnedBoost ? boost169 +, boost , llvmPackages , gmp , emacs @@ -33,7 +32,14 @@ in stdenv.mkDerivation rec { sha256 = "1hgh1a8hgzgr6781as4c4rc52m2wbazdlw3646s57c719g5xphjz"; }; - patches = [ ./patch-limits.diff ]; + patches = [ + ./patch-limits.diff + (fetchpatch { + name = "remove-uses-of-deprecated-boost-apis.patch"; + url = "https://github.com/mozart/mozart2/commit/4256d3a9122e1cbb01400a1807bdee66088ff274.patch"; + hash = "sha256-AnOrBnxoCxqis+RdCsq8EKBg//jcNHSOFYUvf7vh+Hc="; + }) + ]; postConfigure = '' cp ${bootcompiler} bootcompiler/bootcompiler.jar @@ -55,7 +61,7 @@ in stdenv.mkDerivation rec { ''; buildInputs = [ - pinnedBoost + boost gmp emacs jre_headless @@ -68,6 +74,9 @@ in stdenv.mkDerivation rec { maintainers = with maintainers; [ layus h7x4 ]; license = licenses.bsd2; homepage = "https://mozart.github.io"; + platforms = platforms.all; + # Trace/BPT trap: 5 + broken = stdenv.isDarwin; }; } diff --git a/pkgs/development/compilers/pforth/default.nix b/pkgs/development/compilers/pforth/default.nix index 44c6ea0a16a26..59994b26aeed5 100644 --- a/pkgs/development/compilers/pforth/default.nix +++ b/pkgs/development/compilers/pforth/default.nix @@ -1,36 +1,36 @@ -{ lib, stdenv, fetchFromGitHub, fetchpatch }: +{ lib +, stdenv +, fetchFromGitHub +}: -stdenv.mkDerivation { - version = "28"; +stdenv.mkDerivation (finalAttrs: { pname = "pforth"; + version = "2.0.1"; + src = fetchFromGitHub { owner = "philburk"; repo = "pforth"; - rev = "9190005e32c6151b76ac707b30eeb4d5d9dd1d36"; - sha256 = "0k3pmcgybsnwrxy75piyb2420r8d4ij190606js32j99062glr3x"; + rev = "v${finalAttrs.version}"; + hash = "sha256-vEjFeHSJl+yAtatYJEnu+r9hmOr/kZOgIbSUXR/c8WU="; }; - patches = [ - (fetchpatch { - name = "gnumake-4.3-fix.patch"; - url = "https://github.com/philburk/pforth/commit/457cb99f57292bc855e53abcdcb7b12d6681e847.patch"; - sha256 = "0x1bwx3pqb09ddjhmdli47lnk1ys4ny42819g17kfn8nkjs5hbx7"; - }) - ]; + dontConfigure = true; - makeFlags = [ "SRCDIR=." ]; - makefile = "build/unix/Makefile"; + preBuild = '' + cd platforms/unix + ''; installPhase = '' install -Dm755 pforth_standalone $out/bin/pforth ''; - meta = { - description = "Portable ANSI style Forth written in ANSI C"; homepage = "http://www.softsynth.com/pforth/"; - license = lib.licenses.publicDomain; + description = "Portable Portable ANS-like Forth written in ANSI 'C'"; + changelog = "https://github.com/philburk/pforth/blob/v${finalAttrs.version}/RELEASES.md"; + license = lib.licenses.bsd0; + maintainers = with lib.maintainers; [ AndersonTorres yrashk ]; platforms = lib.platforms.unix; - maintainers = with lib.maintainers; [ yrashk ]; }; -} +}) +# TODO: option for install the non-standalone executable diff --git a/pkgs/development/compilers/rust/1_69.nix b/pkgs/development/compilers/rust/1_70.nix index 5f2e2e9acdc4c..9025adacfe741 100644 --- a/pkgs/development/compilers/rust/1_69.nix +++ b/pkgs/development/compilers/rust/1_70.nix @@ -20,8 +20,8 @@ } @ args: import ./default.nix { - rustcVersion = "1.69.0"; - rustcSha256 = "sha256-+wWXGGetbMq703ICefWpS5n2ECSSMYe1a7XEVfo89g8="; + rustcVersion = "1.70.0"; + rustcSha256 = "sha256-sr+uAAt6UEDk7Eu8UKCfIVSBkMt1cLDtdzWDaEE70nw="; llvmSharedForBuild = pkgsBuildBuild.llvmPackages_15.libllvm.override { enableSharedLibraries = true; }; llvmSharedForHost = pkgsBuildHost.llvmPackages_15.libllvm.override { enableSharedLibraries = true; }; @@ -37,25 +37,25 @@ import ./default.nix { # Note: the version MUST be one version prior to the version we're # building - bootstrapVersion = "1.68.2"; + bootstrapVersion = "1.69.0"; # fetch hashes by running `print-hashes.sh ${bootstrapVersion}` bootstrapHashes = { - i686-unknown-linux-gnu = "a85e1aa0831e8bd31dc8ba3e042b6dea69b4d45fd5d1111bf6fd2cc9d58dd619"; - x86_64-unknown-linux-gnu = "df7c7466ef35556e855c0d35af7ff08e133040400452eb3427c53202b6731926"; - x86_64-unknown-linux-musl = "bd02cbdedb4b7f2169a68dc8410e8436fab3734a3a30cab81ab21661d70c6ddd"; - arm-unknown-linux-gnueabihf = "a5847f9bcbb1fb4183656b1b01e191d8e48c7bc8346ec6831318b697a2f305c6"; - armv7-unknown-linux-gnueabihf = "f87e4b063b5f916b4a5057e5f544f819cee9ab5da3fe1a977cddb2170e7ba0d7"; - aarch64-unknown-linux-gnu = "b24d0df852490d80791a228f18c2b75f24b1e6437e6e745f85364edab245f7fa"; - aarch64-unknown-linux-musl = "e6615e72aaa3e3c9c42c35139ab253a9b738a4eab719e3e306e25026c1aa93e5"; - x86_64-apple-darwin = "632540d3d83758cb048dc45fcfbc0b29f6f170161a3051be22b0a2962a566fb9"; - aarch64-apple-darwin = "ab4c6add94686a0392953c588c2b61d4c03f51e855232d161dc492f286e34202"; - powerpc64le-unknown-linux-gnu = "cf95658277d71bb8ae3a0fbc53099cc1397ed40e0953c026f41cde4a9619efca"; - riscv64gc-unknown-linux-gnu = "befcf2d53e35ae3fe0d609d1e056bdc814bd36ce54028b8d6b8b9e38c0afcaa5"; - mips64el-unknown-linux-gnuabi64 = "ee85bbfdc2fb831f067fda19881e6427c8c86571ebff16c1bd219d850969ef0a"; + i686-unknown-linux-gnu = "08b2b4f58c0861f40ae159c39cc12f6d41b6858e04a43c6c0aeb36707e2971d0"; + x86_64-unknown-linux-gnu = "2ca4a306047c0b8b4029c382910fcbc895badc29680e0332c9df990fd1c70d4f"; + x86_64-unknown-linux-musl = "071cb04819b15d8801584a1395b28d0472ce99c0e716296e3c0bb4e6318cf171"; + arm-unknown-linux-gnueabihf = "64c82735b4e5606af61be0d01317da436a9590b969e503cdbd19e24636e15845"; + armv7-unknown-linux-gnueabihf = "a509f02d910041c97847e2ccc4ee908c761b7dc5b3c4715922d2b1c573a09675"; + aarch64-unknown-linux-gnu = "88af5aa7a40c8f1b40416a1f27de8ffbe09c155d933f69d3e109c0ccee92353b"; + aarch64-unknown-linux-musl = "76aaf3e4fd7b552feb2d70752c43896a960a2a7c940002f58a5c3f03d2b3c862"; + x86_64-apple-darwin = "9818dab2c3726d63dfbfde12c9273e62e484ef6d6f6e05a6431a3e089c335454"; + aarch64-apple-darwin = "36228cac303298243fb84235db87a5ecf2af49db28585a82af091caefd598677"; + powerpc64le-unknown-linux-gnu = "8ef68b77971c079dbe23b54a2cfb52da012873d96399c424bc223635306e9a58"; + riscv64gc-unknown-linux-gnu = "e1976bf7d0edb7e7789a1ad7ff8086fdb5306a932650fa8182a5d009883fa6c5"; + mips64el-unknown-linux-gnuabi64 = "c4bf3043451d6122a3845db825cbe35b5ca61a44659a00004f6cca1299ad9d72"; }; - selectRustPackage = pkgs: pkgs.rust_1_69; + selectRustPackage = pkgs: pkgs.rust_1_70; rustcPatches = [ ]; } diff --git a/pkgs/development/compilers/swift/sourcekit-lsp/default.nix b/pkgs/development/compilers/swift/sourcekit-lsp/default.nix index d279fc400cb05..5cf928dc424b3 100644 --- a/pkgs/development/compilers/swift/sourcekit-lsp/default.nix +++ b/pkgs/development/compilers/swift/sourcekit-lsp/default.nix @@ -1,12 +1,12 @@ { lib , stdenv , callPackage +, pkg-config , swift , swiftpm , swiftpm2nix , Foundation , XCTest -, pkg-config , sqlite , ncurses , CryptoKit @@ -28,15 +28,13 @@ stdenv.mkDerivation { inherit (sources) version; src = sources.sourcekit-lsp; - nativeBuildInputs = [ swift swiftpm ]; + nativeBuildInputs = [ pkg-config swift swiftpm ]; buildInputs = [ Foundation XCTest - pkg-config sqlite ncursesInput - ] - ++ lib.optionals stdenv.isDarwin [ CryptoKit LocalAuthentication ]; + ] ++ lib.optionals stdenv.isDarwin [ CryptoKit LocalAuthentication ]; configurePhase = generated.configure + '' swiftpmMakeMutable indexstore-db diff --git a/pkgs/development/compilers/swift/swift-docc/default.nix b/pkgs/development/compilers/swift/swift-docc/default.nix index 1c8cf4f3736f4..e79487e7eded9 100644 --- a/pkgs/development/compilers/swift/swift-docc/default.nix +++ b/pkgs/development/compilers/swift/swift-docc/default.nix @@ -32,7 +32,7 @@ stdenv.mkDerivation { # This works around a failure building generate-symbol-graph: # Sources/generate-symbol-graph/main.swift:13:18: error: module 'SwiftDocC' was not compiled for testing # TODO: Figure out the cause. It doesn't seem to happen outside Nixpkgs. - swiftpmFlags = "--product docc"; + swiftpmFlags = [ "--product docc" ]; # TODO: Tests depend on indexstore-db being provided by an existing Swift # toolchain. (ie. looks for `../lib/libIndexStore.so` relative to swiftc. diff --git a/pkgs/development/compilers/swift/swift-format/default.nix b/pkgs/development/compilers/swift/swift-format/default.nix index 95a8f5614ab23..188208ebf4926 100644 --- a/pkgs/development/compilers/swift/swift-format/default.nix +++ b/pkgs/development/compilers/swift/swift-format/default.nix @@ -22,7 +22,7 @@ stdenv.mkDerivation { configurePhase = generated.configure; # We only install the swift-format binary, so don't need the other products. - swiftpmFlags = "--product swift-format"; + swiftpmFlags = [ "--product swift-format" ]; installPhase = '' binPath="$(swiftpmBinPath)" diff --git a/pkgs/development/compilers/swift/swiftpm/default.nix b/pkgs/development/compilers/swift/swiftpm/default.nix index b5abb8bf0336e..e98d82d0d796b 100644 --- a/pkgs/development/compilers/swift/swiftpm/default.nix +++ b/pkgs/development/compilers/swift/swiftpm/default.nix @@ -365,12 +365,12 @@ in stdenv.mkDerivation (commonAttrs // { pname = "swiftpm"; nativeBuildInputs = commonAttrs.nativeBuildInputs ++ [ + pkg-config swift swiftpm-bootstrap ]; buildInputs = [ ncursesInput - pkg-config sqlite XCTest ] diff --git a/pkgs/development/compilers/vyper/default.nix b/pkgs/development/compilers/vyper/default.nix index dce9a4b542c8b..ad35d95bff659 100644 --- a/pkgs/development/compilers/vyper/default.nix +++ b/pkgs/development/compilers/vyper/default.nix @@ -28,14 +28,14 @@ let in buildPythonPackage rec { pname = "vyper"; - version = "0.3.8"; + version = "0.3.9"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-x3MTKxXZgAT35o8pekGxSXhcr5MrrRPr86+3Lab4qn8="; + sha256 = "sha256-4UBSH4qRBgsy+VO9XzosWedM65R1lTo9ml2C95T9OAA="; }; nativeBuildInputs = [ diff --git a/pkgs/development/coq-modules/corn/default.nix b/pkgs/development/coq-modules/corn/default.nix index 84bca53931ccb..7a745a3df34a0 100644 --- a/pkgs/development/coq-modules/corn/default.nix +++ b/pkgs/development/coq-modules/corn/default.nix @@ -5,7 +5,7 @@ mkCoqDerivation rec { inherit version; defaultVersion = with lib.versions; lib.switch coq.coq-version [ { case = "8.6"; out = "8.8.1"; } - { case = (range "8.11" "8.16"); out = "8.16.0"; } + { case = (range "8.11" "8.17"); out = "8.16.0"; } { case = (range "8.7" "8.15"); out = "8.13.0"; } ] null; release = { diff --git a/pkgs/development/coq-modules/deriving/default.nix b/pkgs/development/coq-modules/deriving/default.nix index 06e80f118bc02..b13b14a5703c1 100644 --- a/pkgs/development/coq-modules/deriving/default.nix +++ b/pkgs/development/coq-modules/deriving/default.nix @@ -8,11 +8,12 @@ mkCoqDerivation { inherit version; defaultVersion = with lib.versions; lib.switch coq.coq-version [ - { case = range "8.11" "8.16"; out = "0.1.0"; } + { case = range "8.11" "8.17"; out = "0.1.1"; } ] null; releaseRev = v: "v${v}"; + release."0.1.1".sha256 = "sha256-Gu8aInLxTXfAFE0/gWRYI046Dx3Gv1j1+gx92v/UnPI="; release."0.1.0".sha256 = "sha256:11crnjm8hyis1qllkks3d7r07s1rfzwvyvpijya3s6iqfh8c7xwh"; propagatedBuildInputs = [ ssreflect ]; diff --git a/pkgs/development/coq-modules/extructures/default.nix b/pkgs/development/coq-modules/extructures/default.nix index b6345d7b0ac3f..e898cecd30bfe 100644 --- a/pkgs/development/coq-modules/extructures/default.nix +++ b/pkgs/development/coq-modules/extructures/default.nix @@ -9,7 +9,7 @@ inherit version; defaultVersion = with lib.versions; lib.switch [coq.coq-version ssreflect.version] [ - { cases = [(range "8.11" "8.16") (isGe "1.12.0") ]; out = "0.3.1"; } + { cases = [(range "8.11" "8.17") (isGe "1.12.0") ]; out = "0.3.1"; } { cases = [(range "8.11" "8.14") (isLe "1.12.0") ]; out = "0.3.0"; } { cases = [(range "8.10" "8.12") (isLe "1.12.0") ]; out = "0.2.2"; } ] null; diff --git a/pkgs/development/coq-modules/math-classes/default.nix b/pkgs/development/coq-modules/math-classes/default.nix index d40dacd39380a..6ae6956110a5c 100644 --- a/pkgs/development/coq-modules/math-classes/default.nix +++ b/pkgs/development/coq-modules/math-classes/default.nix @@ -4,10 +4,14 @@ mkCoqDerivation { pname = "math-classes"; inherit version; - defaultVersion = if lib.versions.range "8.6" "8.16" coq.coq-version then "8.15.0" else null; + defaultVersion = with lib.versions; lib.switch coq.coq-version [ + { case = range "8.12" "8.17"; out = "8.17.0"; } + { case = range "8.6" "8.16"; out = "8.15.0"; } + ] null; release."8.12.0".sha256 = "14nd6a08zncrl5yg2gzk0xf4iinwq4hxnsgm4fyv07ydbkxfb425"; release."8.13.0".sha256 = "1ln7ziivfbxzbdvlhbvyg3v30jgblncmwcsam6gg3d1zz6r7cbby"; release."8.15.0".sha256 = "10w1hm537k6jx8a8vghq1yx12rsa0sjk2ipv3scgir71ln30hllw"; + release."8.17.0".sha256 = "sha256-WklL8pgYTd0l4TGt7h7tWj1qcFcXvoPn25+XKF1pIKA="; propagatedBuildInputs = [ bignums ]; diff --git a/pkgs/development/coq-modules/mathcomp-word/default.nix b/pkgs/development/coq-modules/mathcomp-word/default.nix index 090cc4567c3b0..492463596c228 100644 --- a/pkgs/development/coq-modules/mathcomp-word/default.nix +++ b/pkgs/development/coq-modules/mathcomp-word/default.nix @@ -9,13 +9,14 @@ mkCoqDerivation { releaseRev = v: "v${v}"; + release."2.1".sha256 = "sha256-oN/zvnePq64Nt7l/zIDLdhb4t9ayKxnZCsn+pzqS030="; release."2.0".sha256 = "sha256-x9AEFadlYiIIOxAhjv4Vc/dxdRZC7AdWQ6AByvLOFDk="; release."1.1".sha256 = "sha256:0jb28vgkr4xpg9d6k85rq7abpx5ch612iw9ps5w8q80q1jpjlc4z"; release."1.0".sha256 = "sha256:0703m97rnivcbc7vvbd9rl2dxs6l8n52cbykynw61c6w9rhxspcg"; inherit version; defaultVersion = with lib.versions; lib.switch [ coq.version mathcomp.version ] [ - { cases = [ (range "8.12" "8.16") (isGe "1.12") ]; out = "2.0"; } + { cases = [ (range "8.12" "8.17") (isGe "1.12") ]; out = "2.1"; } ] null; propagatedBuildInputs = [ mathcomp.algebra mathcomp.ssreflect mathcomp.fingroup ]; diff --git a/pkgs/development/coq-modules/relation-algebra/default.nix b/pkgs/development/coq-modules/relation-algebra/default.nix index c8fb6982b84e6..bd9c78f78a76c 100644 --- a/pkgs/development/coq-modules/relation-algebra/default.nix +++ b/pkgs/development/coq-modules/relation-algebra/default.nix @@ -9,6 +9,7 @@ mkCoqDerivation { then "v.${v}" else "v${v}"; + release."1.7.9".sha256 = "sha256-1WzAZyj6q7s0u/9r7lahzxTl8612EA540l9wpm7TYEg="; release."1.7.8".sha256 = "sha256-RITFd3G5TjY+rFzW073Ao1AGU+u6OGQyQeGHVodAXnA="; release."1.7.7".sha256 = "sha256:1dff3id6nypl2alhk9rcifj3dab0j78dym05blc525lawsmc26l2"; release."1.7.6".sha256 = "sha256:02gsj06zcy9zgd0h1ibqspwfiwm36pkkgg9cz37k4bxzcapxcr6w"; @@ -20,6 +21,7 @@ mkCoqDerivation { inherit version; defaultVersion = with lib.versions; lib.switch coq.coq-version [ + { case = isEq "8.17"; out = "1.7.9"; } { case = isEq "8.16"; out = "1.7.8"; } { case = isEq "8.15"; out = "1.7.7"; } { case = isEq "8.14"; out = "1.7.6"; } diff --git a/pkgs/development/guile-modules/guile-opengl/default.nix b/pkgs/development/guile-modules/guile-opengl/default.nix index 437af0f4edf23..efbb23cf71f5f 100644 --- a/pkgs/development/guile-modules/guile-opengl/default.nix +++ b/pkgs/development/guile-modules/guile-opengl/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation rec { pname = "guile-opengl"; - version = "0.1.0"; + version = "0.2.0"; src = fetchurl { url = "mirror://gnu/${pname}/${pname}-${version}.tar.gz"; - hash = "sha256-NdK5UwUszX5B0kKbynG8oD2PCKIGpZ1x91ktBDvpDo8="; + hash = "sha256-uPCH7CiCPQmfuELDupQQS7BPqecIFmSHpHGYnhwXbGU="; }; nativeBuildInputs = [ diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index dff357eb4e95b..d8e391dfd7b71 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -61,15 +61,15 @@ self: super: { # not solvable short of recompiling GHC. Instead of adding # allowInconsistentDependencies for all reverse dependencies of hspec-core, # just upgrade to an hspec version without the offending dependency. - hspec-core = cself.hspec-core_2_11_0_1; - hspec-discover = cself.hspec-discover_2_11_0_1; - hspec = cself.hspec_2_11_0_1; + hspec-core = cself.hspec-core_2_11_1; + hspec-discover = cself.hspec-discover_2_11_1; + hspec = cself.hspec_2_11_1; # hspec-discover and hspec-core depend on hspec-meta for testing which - # we need to avoid since it depends on ghc as well. Since hspec*_2_10* + # we need to avoid since it depends on ghc as well. Since hspec*_2_11* # are overridden to take the versioned attributes as inputs, we need # to make sure to override the versioned attribute with this fix. - hspec-discover_2_11_0_1 = dontCheck csuper.hspec-discover_2_11_0_1; + hspec-discover_2_11_1 = dontCheck csuper.hspec-discover_2_11_1; # Prevent dependency on doctest which causes an inconsistent dependency # due to depending on ghc which depends on directory etc. @@ -122,7 +122,6 @@ self: super: { # 2023-04-03: https://github.com/haskell/haskell-language-server/issues/3546#issuecomment-1494139751 # There will probably be a new revision soon. - hls-tactics-plugin = assert super.hls-tactics-plugin.version == "1.8.0.0"; doJailbreak super.hls-tactics-plugin; hls-brittany-plugin = assert super.hls-brittany-plugin.version == "1.1.0.0"; doJailbreak super.hls-brittany-plugin; hls-hlint-plugin = super.hls-hlint-plugin.override { @@ -131,65 +130,6 @@ self: super: { apply-refact = self.apply-refact_0_11_0_0; }; - hls-test-utils = appendPatch (fetchpatch { - name = "hls-test-utils-ghcide-1.10-compat.patch"; - url = "https://github.com/haskell/haskell-language-server/commit/014c8f90249f11a8dfa1286e67d452ccfb42b2d0.patch"; - relative = "hls-test-utils"; - hash = "sha256-sBuqSmgCQSgbXV6KPEZcIP09wbx81q5xjSg7/slH2HQ="; - }) super.hls-test-utils; - - hls-rename-plugin = if lib.versionAtLeast super.ghc.version "9.4" then overrideCabal - (drv: { - prePatch = drv.prePatch or "" + '' - "${pkgs.buildPackages.dos2unix}/bin/dos2unix" *.cabal - ''; - }) - (appendPatch (fetchpatch { - name = "hls-rename-ghc-9.4-compat.patch"; - url = "https://github.com/haskell/haskell-language-server/commit/472947cdb9e711f6ef889bba3b83b0dd44a1b6bc.patch"; - relative = "plugins/hls-rename-plugin"; - hash = "sha256-WPhCQmn3rjCOiQFJz23QQ84zfm43FNll0BfsNK5pkG0="; - }) super.hls-rename-plugin) else super.hls-rename-plugin; - - hls-floskell-plugin = if lib.versionAtLeast super.ghc.version "9.4" then overrideCabal - (drv: { - prePatch = drv.prePatch or "" + '' - "${pkgs.buildPackages.dos2unix}/bin/dos2unix" *.cabal - ''; - }) - (appendPatch (fetchpatch { - name = "hls-floskell-ghc-9.4-compat.patch"; - url = "https://github.com/haskell/haskell-language-server/commit/ddc67b2d4d719623b657aa54db20bf58c58a5d4a.patch"; - relative = "plugins/hls-floskell-plugin"; - hash = "sha256-n2vuzGbdvhW6I8c7Q22SuNIKSX2LwGNBTVyLLHJIsiU="; - }) super.hls-floskell-plugin) else super.hls-floskell-plugin; - - hls-stylish-haskell-plugin = if lib.versionAtLeast super.ghc.version "9.4" then overrideCabal - (drv: { - prePatch = drv.prePatch or "" + '' - "${pkgs.buildPackages.dos2unix}/bin/dos2unix" *.cabal - ''; - }) - (appendPatch (fetchpatch { - name = "hls-stylish-haskell-ghc-9.4-compat.patch"; - url = "https://github.com/haskell/haskell-language-server/commit/ddc67b2d4d719623b657aa54db20bf58c58a5d4a.patch"; - relative = "plugins/hls-stylish-haskell-plugin"; - hash = "sha256-GtN9t5zMOROCDSLiscLZ5GmqDV+ql9R2z/+W++C2h2Q="; - }) super.hls-stylish-haskell-plugin) else super.hls-stylish-haskell-plugin; - - hie-compat = if lib.versionAtLeast super.ghc.version "9.6" then overrideCabal - (drv: { - prePatch = drv.prePatch or "" + '' - "${pkgs.buildPackages.dos2unix}/bin/dos2unix" *.cabal - ''; - }) - (appendPatch (fetchpatch { - name = "hie-compat-9.6-compat.patch"; - url = "https://github.com/haskell/haskell-language-server/commit/191bda61fef34696a793503e639a53003ff70660.patch"; - relative = "hie-compat"; - hash = "sha256-z81+fwxwZ8BQWGRqTnh3XlQ6AG7EiaahdKjT+0lFu1Q="; - }) super.hie-compat) else super.hie-compat; - # For -f-auto see cabal.project in haskell-language-server. ghc-lib-parser-ex = addBuildDepend self.ghc-lib-parser (disableCabalFlag "auto" super.ghc-lib-parser-ex); @@ -785,9 +725,6 @@ self: super: { # vector dependency < 0.12 imagemagick = doJailbreak super.imagemagick; - # https://github.com/liyang/thyme/issues/36 - thyme = dontCheck super.thyme; - # Elm is no longer actively maintained on Hackage: https://github.com/NixOS/nixpkgs/pull/9233. Elm = markBroken super.Elm; elm-build-lib = markBroken super.elm-build-lib; @@ -1029,12 +966,12 @@ self: super: { testHaskellDepends = drv.testHaskellDepends or [] ++ [ self.hspec-meta_2_10_5 ]; testToolDepends = drv.testToolDepends or [] ++ [ pkgs.git ]; }) (super.sensei.override { - hspec = self.hspec_2_11_0_1; + hspec = self.hspec_2_11_1; hspec-wai = self.hspec-wai.override { - hspec = self.hspec_2_11_0_1; + hspec = self.hspec_2_11_1; }; hspec-contrib = self.hspec-contrib.override { - hspec-core = self.hspec-core_2_11_0_1; + hspec-core = self.hspec-core_2_11_1; }; fsnotify = self.fsnotify_0_4_1_0; }); @@ -1102,6 +1039,9 @@ self: super: { cp -v embeddedfiles/*.info* $out/share/info/ ''; }) super.hledger; + hledger_1_29_2 = doDistribute (super.hledger_1_29_2.override { + hledger-lib = self.hledger-lib_1_29_2; + }); hledger-ui = overrideCabal (drv: { postInstall = '' for i in $(seq 1 9); do @@ -1698,18 +1638,19 @@ self: super: { # https://github.com/biocad/servant-openapi3/issues/30 servant-openapi3 = dontCheck super.servant-openapi3; - # Give hspec 2.10.* correct dependency versions without overrideScope - hspec_2_11_0_1 = doDistribute (super.hspec_2_11_0_1.override { - hspec-discover = self.hspec-discover_2_11_0_1; - hspec-core = self.hspec-core_2_11_0_1; + # Give latest hspec correct dependency versions without overrideScope + hspec_2_11_1 = doDistribute (super.hspec_2_11_1.override { + hspec-discover = self.hspec-discover_2_11_1; + hspec-core = self.hspec-core_2_11_1; }); - hspec-discover_2_11_0_1 = doDistribute (super.hspec-discover_2_11_0_1.override { + hspec-discover_2_11_1 = doDistribute (super.hspec-discover_2_11_1.override { hspec-meta = self.hspec-meta_2_10_5; }); - # Need to disable tests to prevent an infinite recursion if hspec-core_2_11_0_1 + # Need to disable tests to prevent an infinite recursion if hspec-core_2_11_1 # is overlayed to hspec-core. - hspec-core_2_11_0_1 = doDistribute (dontCheck (super.hspec-core_2_11_0_1.override { + hspec-core_2_11_1 = doDistribute (dontCheck (super.hspec-core_2_11_1.override { hspec-meta = self.hspec-meta_2_10_5; + hspec-expectations = self.hspec-expectations_0_8_3; })); # Point hspec 2.7.10 to correct dependencies @@ -1722,6 +1663,14 @@ self: super: { servant-swagger-ui-core = doJailbreak super.servant-swagger-ui-core; hercules-ci-agent = lib.pipe super.hercules-ci-agent [ + (appendPatches [ + # https://github.com/hercules-ci/hercules-ci-agent/pull/507 + (fetchpatch { + url = "https://github.com/hercules-ci/hercules-ci-agent/commit/f5c39d0cbde36a056419cab8d69a67302eb8b0e4.patch"; + sha256 = "sha256-J8N4+HUQ6vlJBCwCyxv8Fv5HSbtiim64Qh1n9CaRe1o="; + stripLen = 1; + }) + ]) (self.generateOptparseApplicativeCompletions [ "hercules-ci-agent" ]) ]; @@ -2515,7 +2464,7 @@ self: super: { # 2022-11-15: Needs newer witch package and brick 1.3 which in turn works with text-zipper 0.12 # Other dependencies are resolved with doJailbreak for both swarm and brick_1_3 swarm = doJailbreak (super.swarm.override { - brick = doJailbreak (dontCheck super.brick_1_7); + brick = doJailbreak (dontCheck super.brick_1_9); }); # Too strict upper bound on bytestring @@ -2659,7 +2608,7 @@ self: super: { # https://github.com/fourmolu/fourmolu/issues/231 fourmolu_0_12_0_0 = dontCheck (super.fourmolu_0_12_0_0.overrideScope (lself: lsuper: { Cabal-syntax = lself.Cabal-syntax_3_10_1_0; - ghc-lib-parser = lself.ghc-lib-parser_9_6_1_20230312; + ghc-lib-parser = lself.ghc-lib-parser_9_6_2_20230523; parsec = lself.parsec_3_1_16_1; text = lself.text_2_0_2; })); diff --git a/pkgs/development/haskell-modules/configuration-darwin.nix b/pkgs/development/haskell-modules/configuration-darwin.nix index c54e2dd03d303..b800debe15eed 100644 --- a/pkgs/development/haskell-modules/configuration-darwin.nix +++ b/pkgs/development/haskell-modules/configuration-darwin.nix @@ -35,6 +35,7 @@ self: super: ({ double-conversion = addExtraLibrary pkgs.libcxx super.double-conversion; streamly = addBuildDepend darwin.apple_sdk.frameworks.Cocoa super.streamly; + streamly_0_9_0 = addBuildDepend darwin.apple_sdk.frameworks.Cocoa super.streamly_0_9_0; apecs-physics = addPkgconfigDepends [ darwin.apple_sdk.frameworks.ApplicationServices @@ -117,6 +118,12 @@ self: super: ({ yesod-bin = addBuildDepend darwin.apple_sdk.frameworks.Cocoa super.yesod-bin; + yesod-core = super.yesod-core.overrideAttrs (drv: { + # Allow access to local networking when the Darwin sandbox is enabled, so yesod-core can + # run tests that access localhost. + __darwinAllowLocalNetworking = true; + }); + hmatrix = addBuildDepend darwin.apple_sdk.frameworks.Accelerate super.hmatrix; blas-hs = overrideCabal (drv: { @@ -276,6 +283,12 @@ self: super: ({ '' + drv.postPatch or ""; }) super.http-client-tls; + http2 = super.http2.overrideAttrs (drv: { + # Allow access to local networking when the Darwin sandbox is enabled, so http2 can run tests + # that access localhost. + __darwinAllowLocalNetworking = true; + }); + foldl = overrideCabal (drv: { postPatch = '' # This comment has been inserted, so the derivation hash changes, forcing diff --git a/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix b/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix index ca7080c821b43..206add606da78 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix @@ -78,6 +78,10 @@ self: super: { # https://github.com/sjakobi/bsb-http-chunked/issues/38 bsb-http-chunked = dontCheck super.bsb-http-chunked; + # https://github.com/NixOS/cabal2nix/issues/554 + # https://github.com/clash-lang/clash-compiler/blob/f0f6275e19b8c672f042026c478484c5fd45191d/README.md#ghc-compatibility + clash-prelude = dontDistribute (markBroken super.clash-prelude); + # 2022-08-01: Tests are broken on ghc 9.2.4: https://github.com/wz1000/HieDb/issues/46 hiedb = dontCheck super.hiedb; diff --git a/pkgs/development/haskell-modules/configuration-ghc-9.4.x.nix b/pkgs/development/haskell-modules/configuration-ghc-9.4.x.nix index b2d32bf32c00a..230e0f324f631 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-9.4.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-9.4.x.nix @@ -190,14 +190,6 @@ in { # https://github.com/kowainik/relude/issues/436 relude = dontCheck (doJailbreak super.relude); - # Fixes compilation failure with GHC >= 9.4 on aarch64-* due to an API change - cborg = appendPatch (pkgs.fetchpatch { - name = "cborg-support-ghc-9.4.patch"; - url = "https://github.com/well-typed/cborg/pull/304.diff"; - sha256 = "sha256-W4HldlESKOVkTPhz9nkFrvbj9akCOtF1SbIt5eJqtj8="; - relative = "cborg"; - }) super.cborg; - ormolu = doDistribute self.ormolu_0_5_3_0; # https://github.com/tweag/ormolu/issues/941 fourmolu = overrideCabal (drv: { @@ -213,11 +205,6 @@ in { cairo = __CabalEagerPkgConfigWorkaround (doJailbreak super.cairo); pango = __CabalEagerPkgConfigWorkaround (doJailbreak super.pango); - # The gtk2hs setup hook provided by this package lacks the ppOrdering field that - # recent versions of Cabal require. This leads to builds like cairo and glib - # failing during the Setup.hs phase: https://github.com/gtk2hs/gtk2hs/issues/323. - gtk2hs-buildtools = appendPatch ./patches/gtk2hs-buildtools-fix-ghc-9.4.x.patch super.gtk2hs-buildtools; - # Pending text-2.0 support https://github.com/gtk2hs/gtk2hs/issues/327 gtk = doJailbreak super.gtk; } diff --git a/pkgs/development/haskell-modules/configuration-ghc-9.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-9.6.x.nix index a80c10df756a7..2fa5a3a6a4ff7 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-9.6.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-9.6.x.nix @@ -77,8 +77,8 @@ self: super: { aeson = doDistribute self.aeson_2_1_2_1; memory = doDistribute self.memory_0_18_0; - ghc-lib = doDistribute self.ghc-lib_9_6_1_20230312; - ghc-lib-parser = doDistribute self.ghc-lib-parser_9_6_1_20230312; + ghc-lib = doDistribute self.ghc-lib_9_6_2_20230523; + ghc-lib-parser = doDistribute self.ghc-lib-parser_9_6_2_20230523; ghc-lib-parser-ex = doDistribute self.ghc-lib-parser-ex_9_6_0_0; # allows mtl, template-haskell, text and transformers @@ -103,8 +103,7 @@ self: super: { # Forbids base >= 4.18, fix proposed: https://github.com/sjakobi/newtype-generics/pull/25 newtype-generics = jailbreakForCurrentVersion super.newtype-generics "0.6.2"; - # Forbids base >= 4.18, fix proposed: https://github.com/well-typed/cborg/pull/312 - cborg = jailbreakForCurrentVersion super.cborg "0.2.8.0"; + cborg-json = jailbreakForCurrentVersion super.cborg-json "0.2.5.0"; serialise = jailbreakForCurrentVersion super.serialise "0.2.6.0"; @@ -155,13 +154,22 @@ self: super: { # 2023-04-03: plugins disabled for hls 1.10.0.0 based on # - haskell-language-server = super.haskell-language-server.override { - hls-ormolu-plugin = null; - hls-floskell-plugin = null; - hls-fourmolu-plugin = null; - hls-hlint-plugin = null; - hls-stylish-haskell-plugin = null; - }; + haskell-language-server = + let + # TODO: HLS-2.0.0.0 added support for the foumolu plugin for ghc-9.6. + # However, putting together all the overrides to get the latest + # version of fourmolu compiling together with ghc-9.6 and HLS is a + # little annoying, so currently fourmolu has been disabled. We should + # try to enable this at some point in the future. + hlsWithFlags = disableCabalFlag "fourmolu" super.haskell-language-server; + in + hlsWithFlags.override { + hls-ormolu-plugin = null; + hls-floskell-plugin = null; + hls-fourmolu-plugin = null; + hls-hlint-plugin = null; + hls-stylish-haskell-plugin = null; + }; MonadRandom = super.MonadRandom_0_6; unix-compat = super.unix-compat_0_7; diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml index d18e14702ab75..b9f417b2b176c 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml @@ -703,7 +703,6 @@ broken-packages: - clanki - clarifai - CLASE - - clash-prelude - Clash-Royale-Hack-Cheats - ClassLaws - classy-influxdb-simple @@ -843,7 +842,6 @@ broken-packages: - conferer-provider-json - conferer-snap - conferer-source-json - - conferer-warp - confide - ConfigFileTH - config-parser @@ -2430,6 +2428,7 @@ broken-packages: - hplaylist - hpodder - hpqtypes + - hprox # dependency missing in job https://hydra.nixos.org/build/221844808 at 2023-05-30 - hps-kmeans - hPushover - hpygments @@ -2607,6 +2606,7 @@ broken-packages: - http-rfc7807 - http-server - http-shed + - httpstan # dependency missing in job https://hydra.nixos.org/build/221916023 at 2023-05-31 - http-wget - htune - htvm @@ -2739,6 +2739,7 @@ broken-packages: - inj-base - inject-function - injections + - inline-c-objc # failure building test suite 'tests' in job https://hydra.nixos.org/build/221844966 at 2023-05-30 - in-other-words-plugin - inserts - instana-haskell-trace-sdk @@ -3093,6 +3094,7 @@ broken-packages: - libpq - librandomorg - libsecp256k1 + - libssh2 # failure in compileBuildDriverPhase in job https://hydra.nixos.org/build/223222399 at 2023-06-07 - libsystemd-daemon - libtagc - libxls @@ -5056,6 +5058,7 @@ broken-packages: - state-record - static - static-canvas + - static-ls # failure in job https://hydra.nixos.org/build/221848657 at 2023-05-30 - static-tensor - statistics-dirichlet - statistics-fusion @@ -5862,6 +5865,7 @@ broken-packages: - wol - word24 - word2vec-model + - word8set # failure in job https://hydra.nixos.org/build/221843616 at 2023-05-30 - wordchoice - wordify - Wordlint diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml index 111c46d62161d..e3a00fc09b120 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml @@ -202,7 +202,7 @@ package-maintainers: - vulkan-utils erictapen: - hakyll - Gabriel439: + Gabriella439: - annah - bench - break @@ -459,6 +459,7 @@ package-maintainers: - calendar-recycling - checksum - check-pvp + - coinor-clp - combinatorial - comfort-graph - comfort-array @@ -490,6 +491,7 @@ package-maintainers: - jack - latex - lazyio + - linear-programming - markov-chain - midi - midi-alsa @@ -548,6 +550,7 @@ package-maintainers: - netlib-comfort-array - blas-comfort-array - lapack-comfort-array + - comfort-blas - lapack - lapack-hmatrix - hmm-lapack @@ -568,6 +571,8 @@ unsupported-platforms: bytelog: [ platforms.darwin ] # due to posix-api camfort: [ aarch64-linux ] charsetdetect: [ aarch64-linux ] # not supported by vendored lib / not configured properly https://github.com/batterseapower/libcharsetdetect/issues/3 + Codec-Image-DevIL: [ platforms.darwin ] # depends on mesa + coinor-clp: [ aarch64-linux ] # aarch64-linux is not supported by required system dependency clp cut-the-crap: [ platforms.darwin ] essence-of-live-coding-PortMidi: [ platforms.darwin ] Euterpea: [ platforms.darwin ] @@ -588,9 +593,12 @@ unsupported-platforms: gi-webkit2webextension: [ platforms.darwin ] # webkitgtk marked broken on darwin gi-webkit2: [ platforms.darwin ] # webkitgtk marked broken on darwin gi-wnck: [ platforms.darwin ] + gl: [ platforms.darwin ] # depends on mesa + GLHUI: [ platforms.darwin ] # depends on mesa gnome-keyring: [ platforms.darwin ] grid-proto: [ platforms.darwin ] gtk-sni-tray: [ platforms.darwin ] + h-raylib: [ platforms.darwin ] # depends on mesa haskell-snake: [ platforms.darwin ] hb3sum: [ aarch64-linux ] # depends on blake3, which is not supported on aarch64-linux hcwiid: [ platforms.darwin ] @@ -599,6 +607,7 @@ unsupported-platforms: hinotify-bytestring: [ platforms.darwin ] honk: [ platforms.darwin ] HSoM: [ platforms.darwin ] + intricacy: [ platforms.darwin ] # depends on mesa iwlib: [ platforms.darwin ] Jazzkell: [ platforms.darwin ] # depends on Euterpea jsaddle-hello: [ platforms.darwin ] # depends on jsaddle-webkit2gtk @@ -619,8 +628,11 @@ unsupported-platforms: mpi-hs-binary: [ aarch64-linux, platforms.darwin ] mpi-hs-cereal: [ aarch64-linux, platforms.darwin ] mpi-hs-store: [ aarch64-linux, platforms.darwin ] - mplayer-spot: [ aarch64-linux ] + mplayer-spot: [ aarch64-linux, platforms.darwin ] + monomer: [ platforms.darwin ] # depends on mesa + monomer-hagrid: [ platforms.darwin ] # depends on mesa mptcp-pm: [ platforms.darwin ] + nanovg: [ platforms.darwin ] # depends on mesa netlink: [ platforms.darwin ] notifications-tray-icon: [ platforms.darwin ] # depends on gi-dbusmenu oculus: [ platforms.darwin ] @@ -638,6 +650,8 @@ unsupported-platforms: reflex-localize-dom: [ platforms.darwin, aarch64-linux ] rtlsdr: [ platforms.darwin ] rubberband: [ platforms.darwin ] + SDL-mixer: [ platforms.darwin ] # depends on mesa + SDL-mpeg: [ platforms.darwin ] # depends on mesa sdl2-mixer: [ platforms.darwin ] sdl2-ttf: [ platforms.darwin ] sensei: [ platforms.darwin ] @@ -814,3 +828,10 @@ dont-distribute-packages: # Output exceeds Hydra's maximum allowable size - stripeapi + + # Packages that (transitively) depend on insecure packages + - distributed-process-zookeeper # depends on hzk + - hzk # depends on zookeeper_mt, which depends on openssl-1.1 + - persistent-zookeper # depends on hzk + - pocket-dns # depends on persistent-zookeeper + - zoovisitor # depends on zookeeper_mt, which depends on openssl-1.1 diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/stackage.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/stackage.yaml index 63a1b744cc79d..56493ce6da908 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/stackage.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/stackage.yaml @@ -1,4 +1,4 @@ -# Stackage LTS 20.20 +# Stackage LTS 20.23 # This file is auto-generated by # maintainers/scripts/haskell/update-stackage.sh default-package-overrides: @@ -203,7 +203,7 @@ default-package-overrides: - bitvec ==1.1.4.0 - bitwise-enum ==1.0.1.0 - blake2 ==0.3.0 - - Blammo ==1.1.1.1 + - Blammo ==1.1.1.2 - blank-canvas ==0.7.3 - blanks ==0.5.0 - blas-carray ==0.1.0.2 @@ -227,7 +227,7 @@ default-package-overrides: - bookkeeping ==0.4.0.1 - Boolean ==0.2.4 - boolsimplifier ==0.1.8 - - boomerang ==1.4.8.1 + - boomerang ==1.4.9 - boots ==0.2.0.1 - bordacount ==0.1.0.0 - boring ==0.2.1 @@ -294,11 +294,11 @@ default-package-overrides: - cache ==0.1.3.0 - cached-json-file ==0.1.1 - cacophony ==0.10.1 - - cairo ==0.13.8.2 + - cairo ==0.13.10.0 - calendar-recycling ==0.0.0.1 - call-alloy ==0.4.0.3 - calligraphy ==0.1.4 - - call-plantuml ==0.0.1.1 + - call-plantuml ==0.0.1.2 - call-stack ==0.4.0 - can-i-haz ==0.3.1.1 - capability ==0.5.0.1 @@ -315,7 +315,7 @@ default-package-overrides: - cassava-megaparsec ==2.0.4 - cast ==0.1.0.2 - cayley-client ==0.4.19.2 - - cborg ==0.2.8.0 + - cborg ==0.2.9.0 - cborg-json ==0.2.5.0 - cdar-mBound ==0.1.0.4 - c-enum ==0.1.1.3 @@ -388,7 +388,7 @@ default-package-overrides: - commutative ==0.0.2 - comonad ==5.0.8 - comonad-extras ==4.0.1 - - compactmap ==0.1.4.2.1 + - compactmap ==0.1.4.3 - compensated ==0.8.3 - compiler-warnings ==0.1.0 - componentm ==0.0.0.2 @@ -405,11 +405,11 @@ default-package-overrides: - concise ==0.1.0.1 - concurrency ==1.11.0.2 - concurrent-extra ==0.7.0.12 - - concurrent-output ==1.10.17 + - concurrent-output ==1.10.18 - concurrent-split ==0.0.1.1 - cond ==0.4.1.1 - conduino ==0.2.2.0 - - conduit ==1.3.4.3 + - conduit ==1.3.5 - conduit-aeson ==0.1.0.1 - conduit-algorithms ==0.0.13.0 - conduit-combinators ==1.3.0 @@ -447,7 +447,7 @@ default-package-overrides: - cookie ==0.4.6 - copr-api ==0.1.0 - core-data ==0.3.9.1 - - core-program ==0.6.6.0 + - core-program ==0.6.8.0 - core-telemetry ==0.2.9.1 - core-text ==0.3.8.1 - countable ==1.2 @@ -486,7 +486,7 @@ default-package-overrides: - crypt-sha512 ==0 - csp ==1.4.0 - css-text ==0.1.3.0 - - c-struct ==0.1.1.3 + - c-struct ==0.1.3.0 - csv ==0.1.2 - csv-conduit ==0.7.3.0 - ctrie ==0.2 @@ -587,7 +587,7 @@ default-package-overrides: - diagrams-cairo ==1.4.2 - diagrams-canvas ==1.4.1.1 - diagrams-contrib ==1.4.5 - - diagrams-core ==1.5.0.1 + - diagrams-core ==1.5.1 - diagrams-lib ==1.4.5.2 - diagrams-postscript ==1.5.1.1 - diagrams-rasterific ==1.4.2.2 @@ -655,7 +655,7 @@ default-package-overrides: - duration ==0.2.0.0 - dvorak ==0.1.0.0 - dynamic-state ==0.3.1 - - dyre ==0.9.1 + - dyre ==0.9.2 - eap ==0.9.0.2 - Earley ==0.13.0.1 - easy-file ==0.2.5 @@ -923,7 +923,7 @@ default-package-overrides: - ghc-source-gen ==0.4.3.0 - ghc-syntax-highlighter ==0.0.8.0 - ghc-tcplugins-extra ==0.4.4 - - ghc-trace-events ==0.1.2.6 + - ghc-trace-events ==0.1.2.7 - ghc-typelits-extra ==0.4.5 - ghc-typelits-knownnat ==0.7.8 - ghc-typelits-natnormalise ==0.7.8 @@ -949,11 +949,11 @@ default-package-overrides: - gi-gtksource ==3.0.28 - gi-harfbuzz ==0.0.9 - gi-javascriptcore ==4.0.27 - - gio ==0.13.8.2 + - gio ==0.13.10.0 - gi-pango ==1.0.29 - githash ==0.1.6.3 - github ==0.28.0.1 - - github-release ==2.0.0.5 + - github-release ==2.0.0.6 - github-rest ==1.1.2 - github-types ==0.2.1 - github-webhooks ==0.16.0 @@ -966,7 +966,7 @@ default-package-overrides: - gl ==0.9 - glasso ==0.1.0 - GLFW-b ==3.3.0.0 - - glib ==0.13.8.2 + - glib ==0.13.10.0 - Glob ==0.10.2 - glob-posix ==0.2.0.1 - gloss ==1.13.2.2 @@ -995,9 +995,9 @@ default-package-overrides: - groom ==0.1.2.1 - grouped-list ==0.2.3.0 - groups ==0.5.3 - - gtk ==0.15.7 - - gtk2hs-buildtools ==0.13.8.3 - - gtk3 ==0.15.7 + - gtk ==0.15.8 + - gtk2hs-buildtools ==0.13.10.0 + - gtk3 ==0.15.8 - gtk-sni-tray ==0.1.8.1 - gtk-strut ==0.1.3.2 - guarded-allocation ==0.0.1 @@ -1047,7 +1047,7 @@ default-package-overrides: - hasql-dynamic-statements ==0.3.1.2 - hasql-implicits ==0.1.1 - hasql-migration ==0.3.0 - - hasql-notifications ==0.2.0.4 + - hasql-notifications ==0.2.0.5 - hasql-optparse-applicative ==0.5 - hasql-pool ==0.8.0.7 - hasql-queue ==1.2.0.2 @@ -1133,7 +1133,7 @@ default-package-overrides: - hpack ==0.35.2 - hpack-dhall ==0.5.7 - hpc-codecov ==0.3.0.0 - - hpc-lcov ==1.1.0 + - hpc-lcov ==1.1.1 - HPDF ==1.6.1 - hpp ==0.6.5 - hpqtypes ==1.9.4.0 @@ -1181,7 +1181,7 @@ default-package-overrides: - hspec-expectations-json ==1.0.0.7 - hspec-expectations-lifted ==0.10.0 - hspec-expectations-pretty-diff ==0.7.2.6 - - hspec-golden ==0.2.0.1 + - hspec-golden ==0.2.1.0 - hspec-golden-aeson ==0.9.0.0 - hspec-hedgehog ==0.0.1.2 - hspec-junit-formatter ==1.1.0.2 @@ -1256,7 +1256,7 @@ default-package-overrides: - hw-hspec-hedgehog ==0.1.1.1 - hw-int ==0.0.2.0 - hw-ip ==2.4.2.1 - - hw-json ==1.3.2.3 + - hw-json ==1.3.2.4 - hw-json-simd ==0.1.1.2 - hw-json-simple-cursor ==0.1.1.1 - hw-json-standard-cursor ==0.2.3.2 @@ -1314,7 +1314,7 @@ default-package-overrides: - influxdb ==1.9.2.2 - ini ==0.4.2 - inj ==1.0 - - inline-c ==0.9.1.7 + - inline-c ==0.9.1.8 - inline-c-cpp ==0.5.0.0 - inliterate ==0.1.0 - input-parsers ==0.2.3.2 @@ -1452,7 +1452,7 @@ default-package-overrides: - lens-properties ==4.11.1 - lens-regex ==0.1.3 - lens-regex-pcre ==1.1.0.0 - - lentil ==1.5.5.2 + - lentil ==1.5.5.4 - LetsBeRational ==1.0.0.0 - leveldb-haskell ==0.6.5 - lexer-applicative ==2.1.0.2 @@ -1525,14 +1525,14 @@ default-package-overrides: - mainland-pretty ==0.7.1 - main-tester ==0.2.0.1 - managed ==1.0.10 - - mandrill ==0.5.6.0 + - mandrill ==0.5.7.0 - map-syntax ==0.3 - markdown ==0.1.17.5 - markdown-unlit ==0.5.1 - markov-chain ==0.0.3.4 - markov-chain-usage-model ==0.0.0 - mason ==0.2.6 - - massiv ==1.0.3.0 + - massiv ==1.0.4.0 - massiv-io ==1.0.0.1 - massiv-persist ==1.0.0.3 - massiv-serialise ==1.0.0.2 @@ -1540,6 +1540,7 @@ default-package-overrides: - mathexpr ==0.3.1.0 - math-extras ==0.1.1.0 - math-functions ==0.3.4.2 + - mathlist ==0.1.0.4 - matplotlib ==0.7.7 - matrices ==0.5.0 - matrix ==0.3.6.1 @@ -1713,7 +1714,7 @@ default-package-overrides: - netwire ==5.0.3 - netwire-input ==0.0.7 - netwire-input-glfw ==0.0.11 - - network ==3.1.2.9 + - network ==3.1.4.0 - network-bsd ==2.8.1.0 - network-byte-order ==0.1.6 - network-conduit-tls ==1.3.2 @@ -1804,10 +1805,10 @@ default-package-overrides: - optics-extra ==0.4.2.1 - optics-th ==0.4.1 - optics-vl ==0.2.1 - - optima ==0.4.0.3 + - optima ==0.4.0.4 - optional-args ==1.0.2 - options ==1.2.1.1 - - optparse-applicative ==0.17.0.0 + - optparse-applicative ==0.17.1.0 - optparse-enum ==1.0.0.0 - optparse-generic ==1.4.9 - optparse-simple ==0.1.1.4 @@ -1829,7 +1830,7 @@ default-package-overrides: - pandoc-plot ==1.5.5 - pandoc-throw ==0.1.0.0 - pandoc-types ==1.22.2.1 - - pango ==0.13.8.2 + - pango ==0.13.10.0 - pantry ==0.5.7 - parallel ==3.2.2.0 - parallel-io ==0.3.5 @@ -1955,7 +1956,7 @@ default-package-overrides: - postgresql-binary ==0.13.1 - postgresql-libpq ==0.9.5.0 - postgresql-libpq-notify ==0.2.0.0 - - postgresql-migration ==0.2.1.6 + - postgresql-migration ==0.2.1.7 - postgresql-query ==3.10.0 - postgresql-schema ==0.1.14 - postgresql-simple ==0.6.4 @@ -2124,7 +2125,7 @@ default-package-overrides: - regex-pcre-builtin ==0.95.2.3.8.44 - regex-posix ==0.96.0.1 - regex-posix-clib ==2.7 - - regex-tdfa ==1.3.2 + - regex-tdfa ==1.3.2.1 - regex-with-pcre ==1.1.0.2 - registry ==0.3.3.4 - registry-aeson ==0.2.3.3 @@ -2408,7 +2409,7 @@ default-package-overrides: - stack ==2.9.1 - stack-all ==0.4.1 - stack-clean-old ==0.4.6 - - stack-templatizer ==0.1.0.2 + - stack-templatizer ==0.1.1.0 - state-codes ==0.1.3 - stateref ==0.3 - statestack ==0.3.1.1 @@ -2427,7 +2428,7 @@ default-package-overrides: - stm-extras ==0.1.0.3 - stm-hamt ==1.2.0.11 - stm-lifted ==2.5.0.0 - - STMonadTrans ==0.4.6 + - STMonadTrans ==0.4.7 - stm-split ==0.0.2.1 - stopwatch ==0.1.0.6 - storable-complex ==0.2.3.0 @@ -2587,7 +2588,7 @@ default-package-overrides: - testing-feat ==1.1.1.1 - testing-type-modifiers ==0.1.0.1 - texmath ==0.12.5.5 - - text-ansi ==0.2.1 + - text-ansi ==0.2.1.1 - text-binary ==0.2.1.1 - text-builder ==0.6.7 - text-builder-dev ==0.3.3.2 @@ -2683,7 +2684,7 @@ default-package-overrides: - transaction ==0.1.1.3 - transformers-base ==0.4.6 - transformers-compat ==0.7.2 - - transformers-either ==0.1.3 + - transformers-either ==0.1.4 - transformers-fix ==1.0 - transient ==0.7.0.0 - traverse-with-class ==1.0.1.1 diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml index cceddaf74fb32..b40feb6a7b4ce 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml @@ -1265,7 +1265,6 @@ dont-distribute-packages: - distributed-process-systest - distributed-process-task - distributed-process-tests - - distributed-process-zookeeper - distributed-static - distribution-plot - dixi @@ -1514,7 +1513,7 @@ dont-distribute-packages: - fpnla-examples - frame-markdown - freckle-app - - freckle-app_1_9_0_1 + - freckle-app_1_9_0_2 - free-functors - free-game - free-theorems-counterexamples @@ -1541,7 +1540,6 @@ dont-distribute-packages: - functor-combo - funflow - funflow-nix - - fungll-combinators - funion - funnyprint - funsat @@ -1934,6 +1932,8 @@ dont-distribute-packages: - hakyll-ogmarkup - hakyll-shortcut-links - halberd + - halide-JuicyPixels + - halide-arrayfire - hall-symbols - halma-gui - halma-telegram-bot @@ -2597,6 +2597,7 @@ dont-distribute-packages: - libmolude - libraft - librato + - libssh2-conduit - libxml-enumerator - lifted-base-tf - lightning-haskell @@ -3004,7 +3005,7 @@ dont-distribute-packages: - padKONTROL - pairing - panda - - pandoc-crossref_0_3_15_2 + - pandoc-crossref_0_3_16_0 - pandoc-highlighting-extensions - pandoc-japanese-filters - pandora-io @@ -3119,13 +3120,13 @@ dont-distribute-packages: - plugins-auto - png-file - pngload - - pocket-dns - point-octree - pointless-lenses - pointless-rewrite - poker - polh-lexicon - polydata + - polyglot - polysemy-RandomFu - polysemy-account - polysemy-account-api @@ -3570,6 +3571,7 @@ dont-distribute-packages: - servant-openapi3 - servant-postgresql - servant-pushbullet-client + - servant-queryparam-openapi3 - servant-rate-limit - servant-reason - servant-server-namedargs @@ -3740,7 +3742,6 @@ dont-distribute-packages: - stackage-setup - stackage-upload - stackage2nix - - stackctl - stan - starrover2 - stateful-mtl @@ -4308,5 +4309,4 @@ dont-distribute-packages: - zoom-cache - zoom-cache-pcm - zoom-cache-sndfile - - zoovisitor - zuramaru diff --git a/pkgs/development/haskell-modules/configuration-nix.nix b/pkgs/development/haskell-modules/configuration-nix.nix index 9e6e13425678b..d02beb6bad6d1 100644 --- a/pkgs/development/haskell-modules/configuration-nix.nix +++ b/pkgs/development/haskell-modules/configuration-nix.nix @@ -426,18 +426,8 @@ self: super: builtins.intersectAttrs super { ''; }) super.leksah); - dyre = - appendPatch - # Dyre needs special support for reading the NIX_GHC env var. This is - # available upstream in https://github.com/willdonnelly/dyre/pull/43, but - # hasn't been released to Hackage as of dyre-0.9.1. Likely included in - # next version. - (pkgs.fetchpatch { - url = "https://github.com/willdonnelly/dyre/commit/c7f29d321aae343d6b314f058812dffcba9d7133.patch"; - sha256 = "10m22k35bi6cci798vjpy4c2l08lq5nmmj24iwp0aflvmjdgscdb"; - }) - # dyre's tests appear to be trying to directly call GHC. - (dontCheck super.dyre); + # dyre's tests appear to be trying to directly call GHC. + dyre = dontCheck super.dyre; # https://github.com/edwinb/EpiVM/issues/13 # https://github.com/edwinb/EpiVM/issues/14 @@ -1023,6 +1013,7 @@ self: super: builtins.intersectAttrs super { (super.cachix.override { fsnotify = dontCheck super.fsnotify_0_4_1_0; hnix-store-core = super.hnix-store-core_0_6_1_0; + nix = self.hercules-ci-cnix-store.nixPackage; }) [ (addBuildTool self.hercules-ci-cnix-store.nixPackage) diff --git a/pkgs/development/haskell-modules/generic-builder.nix b/pkgs/development/haskell-modules/generic-builder.nix index 55b7d8cd46dc0..53ba217ed19bc 100644 --- a/pkgs/development/haskell-modules/generic-builder.nix +++ b/pkgs/development/haskell-modules/generic-builder.nix @@ -7,7 +7,7 @@ let isCross = stdenv.buildPlatform != stdenv.hostPlatform; inherit (buildPackages) fetchurl removeReferencesTo - pkg-config coreutils gnugrep gnused glibcLocales; + pkg-config coreutils gnugrep glibcLocales; in { pname @@ -31,6 +31,7 @@ in , doBenchmark ? false , doHoogle ? true , doHaddockQuickjump ? doHoogle && lib.versionAtLeast ghc.version "8.6" +, doInstallIntermediates ? false , editedCabalFile ? null # aarch64 outputs otherwise exceed 2GB limit , enableLibraryProfiling ? !(ghc.isGhcjs or stdenv.targetPlatform.isAarch64 or false) @@ -84,6 +85,7 @@ in , enableSeparateBinOutput ? false , enableSeparateDataOutput ? false , enableSeparateDocOutput ? doHaddock +, enableSeparateIntermediatesOutput ? false , # Don't fail at configure time if there are multiple versions of the # same package in the (recursive) dependencies of the package being # built. Will delay failures, if any, to compile time. @@ -93,6 +95,10 @@ in # This can make it slightly faster to load this library into GHCi, but takes # extra disk space and compile time. enableLibraryForGhci ? false + # Set this to a previous build of this same package to reuse the intermediate + # build products from that prior build as a starting point for accelerating + # this build +, previousIntermediates ? null } @ args: assert editedCabalFile != null -> revision != null; @@ -240,9 +246,11 @@ let "--ghc-options=-haddock" ]; + postPhases = optional doInstallIntermediates "installIntermediatesPhase"; + setupCompileFlags = [ (optionalString (!coreSetup) "-${nativePackageDbFlag}=$setupPackageConfDir") - (optionalString enableParallelBuilding (parallelBuildingFlags)) + (optionalString enableParallelBuilding parallelBuildingFlags) "-threaded" # https://github.com/haskell/cabal/issues/2398 "-rtsopts" # allow us to pass RTS flags to the generated Setup executable ]; @@ -306,6 +314,8 @@ let continue fi ''; + + intermediatesDir = "share/haskell/${ghc.version}/${pname}-${version}/dist"; in lib.fix (drv: assert allPkgconfigDepends != [] -> pkg-config != null; @@ -316,7 +326,9 @@ stdenv.mkDerivation ({ outputs = [ "out" ] ++ (optional enableSeparateDataOutput "data") ++ (optional enableSeparateDocOutput "doc") - ++ (optional enableSeparateBinOutput "bin"); + ++ (optional enableSeparateBinOutput "bin") + ++ (optional enableSeparateIntermediatesOutput "intermediates"); + setOutputFlags = false; pos = builtins.unsafeGetAttrPos "pname" args; @@ -393,7 +405,13 @@ stdenv.mkDerivation ({ # only use the links hack if we're actually building dylibs. otherwise, the # "dynamic-library-dirs" point to nonexistent paths, and the ln command becomes # "ln -s $out/lib/links", which tries to recreate the links dir and fails - + (optionalString (stdenv.isDarwin && (enableSharedLibraries || enableSharedExecutables)) '' + # + # Note: We need to disable this work-around when using intermediate build + # products from a prior build because otherwise Nix will change permissions on + # the `$out/lib/links` directory to read-only when the build is done after the + # dist directory has already been exported, which triggers an unnecessary + # rebuild of modules included in the exported dist directory. + + (optionalString (stdenv.isDarwin && (enableSharedLibraries || enableSharedExecutables) && !enableSeparateIntermediatesOutput) '' # Work around a limit in the macOS Sierra linker on the number of paths # referenced by any one dynamic library: # @@ -471,11 +489,22 @@ stdenv.mkDerivation ({ runHook postConfigure ''; - buildPhase = '' - runHook preBuild - ${setupCommand} build ${buildTarget}${crossCabalFlagsString}${buildFlagsString} - runHook postBuild - ''; + buildPhase = + '' + runHook preBuild + '' + + lib.optionalString (previousIntermediates != null) + '' + mkdir -p dist; + rm -r dist/build + cp -r ${previousIntermediates}/${intermediatesDir}/build dist/build + find dist/build -exec chmod u+w {} + + find dist/build -exec touch -d '1970-01-01T00:00:00Z' {} + + '' + + '' + ${setupCommand} build ${buildTarget}${crossCabalFlagsString}${buildFlagsString} + runHook postBuild + ''; inherit doCheck; @@ -558,6 +587,15 @@ stdenv.mkDerivation ({ runHook postInstall ''; + ${if doInstallIntermediates then "installIntermediatesPhase" else null} = '' + runHook preInstallIntermediates + intermediatesOutput=${if enableSeparateIntermediatesOutput then "$intermediates" else "$out"} + installIntermediatesDir="$intermediatesOutput/${intermediatesDir}" + mkdir -p "$installIntermediatesDir" + cp -r dist/build "$installIntermediatesDir" + runHook postInstallIntermediates + ''; + passthru = passthru // rec { inherit pname version; @@ -660,7 +698,7 @@ stdenv.mkDerivation ({ lib.optionals (!isCross) setupHaskellDepends); ghcCommandCaps = lib.toUpper ghcCommand'; - in stdenv.mkDerivation ({ + in stdenv.mkDerivation { inherit name shellHook; depsBuildBuild = lib.optional isCross ghcEnvForBuild; @@ -680,7 +718,7 @@ stdenv.mkDerivation ({ "NIX_${ghcCommandCaps}_LIBDIR" = if ghc.isHaLVM or false then "${ghcEnv}/lib/HaLVM-${ghc.version}" else "${ghcEnv}/${ghcLibdir}"; - }); + }; env = envFunc { }; @@ -719,6 +757,7 @@ stdenv.mkDerivation ({ // optionalAttrs (args ? preFixup) { inherit preFixup; } // optionalAttrs (args ? postFixup) { inherit postFixup; } // optionalAttrs (args ? dontStrip) { inherit dontStrip; } +// optionalAttrs (postPhases != []) { inherit postPhases; } // optionalAttrs (stdenv.buildPlatform.libc == "glibc"){ LOCALE_ARCHIVE = "${glibcLocales}/lib/locale/locale-archive"; } ) ) diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix index ede7c9cdf9472..e1993ae80ddee 100644 --- a/pkgs/development/haskell-modules/hackage-packages.nix +++ b/pkgs/development/haskell-modules/hackage-packages.nix @@ -2071,8 +2071,8 @@ self: { }: mkDerivation { pname = "Blammo"; - version = "1.1.1.1"; - sha256 = "1qms459jmikx2dxsl6znn8scb6293s4zprz419da5s71lkiql7cp"; + version = "1.1.1.2"; + sha256 = "156c3yx3gzyic5pnmzkk6fzvw74a2zw2vchf5j12j09qmjq6hyss"; libraryHaskellDepends = [ aeson base bytestring case-insensitive clock containers dlist envparse exceptions fast-logger http-types lens monad-logger-aeson @@ -3561,6 +3561,7 @@ self: { librarySystemDepends = [ libdevil ]; description = "An FFI interface to the DevIL library"; license = lib.licenses.bsd3; + badPlatforms = lib.platforms.darwin; }) {inherit (pkgs) libdevil;}; "Color" = callPackage @@ -7019,6 +7020,7 @@ self: { librarySystemDepends = [ libGL libX11 ]; description = "Open OpenGL context windows in X11 with libX11"; license = lib.licenses.bsd3; + badPlatforms = lib.platforms.darwin; }) {inherit (pkgs) libGL; inherit (pkgs.xorg) libX11;}; "GLM" = callPackage @@ -10577,6 +10579,23 @@ self: { license = lib.licenses.bsd3; }) {}; + "HaskellNet_0_6_1_2" = callPackage + ({ mkDerivation, array, base, base64, bytestring, cryptohash-md5 + , mime-mail, mtl, network, network-bsd, old-time, pretty, text + }: + mkDerivation { + pname = "HaskellNet"; + version = "0.6.1.2"; + sha256 = "0yd0n6c9favb6kv37flz2cn9wz5kapx3iqljq2h7l6qvx6kd92v5"; + libraryHaskellDepends = [ + array base base64 bytestring cryptohash-md5 mime-mail mtl network + network-bsd old-time pretty text + ]; + description = "Client support for POP3, SMTP, and IMAP"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "HaskellNet-SSL" = callPackage ({ mkDerivation, base, bytestring, connection, data-default , HaskellNet, network, network-bsd @@ -12325,8 +12344,8 @@ self: { pname = "JuicyPixels-scale-dct"; version = "0.1.2"; sha256 = "04rhrmjnh12hh2nz04k245avgdcwqfyjnsbpcrz8j9328j41nf7p"; - revision = "9"; - editedCabalFile = "130s6r1p7v0dhfk9q0kb5qlapccap3mbkjzn2y59r00n011rs6bi"; + revision = "10"; + editedCabalFile = "0p522zd42pnpgzp6x9agd5pnz3shsy873r0v84a0dj8c50njhm02"; libraryHaskellDepends = [ base base-compat carray fft JuicyPixels ]; @@ -14543,6 +14562,8 @@ self: { pname = "MuCheck"; version = "0.3.0.4"; sha256 = "183p3fmzz5d67g8wmzgv8c8yyhs0cp7x3xig4cm9s98nhrsm1j0r"; + revision = "1"; + editedCabalFile = "08h1jmsvy8kg3iq5x8hsjb734hhp9zf7fm8aj17v41gzn51icfrv"; libraryHaskellDepends = [ base directory hashable haskell-src-exts hint mtl random syb temporary time @@ -14621,6 +14642,18 @@ self: { mainProgram = "mucheck-smallcheck"; }) {}; + "MultipletCombiner" = callPackage + ({ mkDerivation, base, HUnit }: + mkDerivation { + pname = "MultipletCombiner"; + version = "0.0.4"; + sha256 = "13sps65mxr4jczw8b08civylzvsqdh1zy8h2miz27c9lr2wxmqj8"; + libraryHaskellDepends = [ base HUnit ]; + testHaskellDepends = [ base HUnit ]; + description = "A Haskell implementation for combining SU(n) multiplets"; + license = lib.licenses.bsd3; + }) {}; + "Munkres" = callPackage ({ mkDerivation, array, base }: mkDerivation { @@ -16225,10 +16258,8 @@ self: { ({ mkDerivation, base, QuickCheck }: mkDerivation { pname = "PSQueue"; - version = "1.1.1"; - sha256 = "02pgqzwxndi8cwa5fw668gfsh7z3lzbygkgcsf56bwrxwqjyz4bi"; - revision = "1"; - editedCabalFile = "02a5g59sc9jh3v4pibhjpijv8lsbiydznrpqyin7qhwsyc0p813a"; + version = "1.2.0"; + sha256 = "1rkvaz6gjh6cg9an67nly82v5wvpjrrh7qdlb5q2lc3zpr3kh01r"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base QuickCheck ]; description = "Priority Search Queue"; @@ -18347,6 +18378,7 @@ self: { librarySystemDepends = [ SDL_mixer ]; description = "Binding to libSDL_mixer"; license = lib.licenses.bsd3; + badPlatforms = lib.platforms.darwin; }) {inherit (pkgs) SDL_mixer;}; "SDL-mpeg" = callPackage @@ -18360,6 +18392,7 @@ self: { librarySystemDepends = [ smpeg ]; description = "Binding to the SMPEG library"; license = lib.licenses.bsd3; + badPlatforms = lib.platforms.darwin; }) {inherit (pkgs) smpeg;}; "SDL-ttf" = callPackage @@ -18668,11 +18701,9 @@ self: { }: mkDerivation { pname = "STMonadTrans"; - version = "0.4.6"; - sha256 = "0rvhh0hhwz601ibpzisry7xf3j61r5sxfgp47imaa37i5bvrlynb"; - revision = "1"; - editedCabalFile = "04svg3fwiir2zd5da44pklvw51bs2qm8pqmsnicyav0g0wvhbxbc"; - libraryHaskellDepends = [ array base mtl ]; + version = "0.4.7"; + sha256 = "1x83f48wbzx6rzbls6h8walfayzdv4j3j1mqbk8lfnkdqff9ri5d"; + libraryHaskellDepends = [ array base mtl transformers ]; testHaskellDepends = [ array base tasty tasty-hunit tasty-quickcheck transformers ]; @@ -20430,24 +20461,15 @@ self: { }) {}; "SvgIcons" = callPackage - ({ mkDerivation, base, blaze-markup, blaze-svg, directory, text }: + ({ mkDerivation }: mkDerivation { pname = "SvgIcons"; - version = "0.1.0.0"; - sha256 = "0vwlzjpcz6ky6x5mycsrqlwdfdzxf7y0z8y7pxwnc0h8f8psalr6"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base blaze-markup blaze-svg directory text - ]; - executableHaskellDepends = [ - base blaze-markup blaze-svg directory text - ]; - testHaskellDepends = [ base ]; + version = "1.1.1"; + sha256 = "0nxk4a997sibj8nl1b1r6mcn0r7qbyz68jnirv29lq2yyh6lbja4"; + doHaddock = false; description = "Svg Icons and more"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - mainProgram = "SvgIcons-exe"; broken = true; }) {}; @@ -26516,6 +26538,35 @@ self: { license = lib.licenses.bsd3; }) {}; + "aeson-schemas_1_4_1_0" = callPackage + ({ mkDerivation, aeson, aeson-qq, base, criterion, deepseq + , directory, filepath, first-class-families, hashable, interpolate + , megaparsec, process, QuickCheck, raw-strings-qq, tasty + , tasty-golden, tasty-hunit, tasty-quickcheck, template-haskell + , temporary, text, th-orphans, th-test-utils, unordered-containers + }: + mkDerivation { + pname = "aeson-schemas"; + version = "1.4.1.0"; + sha256 = "0l9qdzcx6fs661zn9vrkpflr5fl92s1w16nb94cabh8v1xzbagxh"; + libraryHaskellDepends = [ + aeson base first-class-families hashable megaparsec + template-haskell text unordered-containers + ]; + testHaskellDepends = [ + aeson aeson-qq base deepseq directory filepath interpolate process + QuickCheck raw-strings-qq tasty tasty-golden tasty-hunit + tasty-quickcheck template-haskell temporary text th-orphans + th-test-utils + ]; + benchmarkHaskellDepends = [ + aeson base criterion deepseq template-haskell th-test-utils + ]; + description = "Easily consume JSON data on-demand with type-safety"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "aeson-serialize" = callPackage ({ mkDerivation, aeson, base, cereal, hspec, HUnit }: mkDerivation { @@ -27612,6 +27663,25 @@ self: { mainProgram = "alex"; }) {}; + "alex_3_3_0_0" = callPackage + ({ mkDerivation, array, base, containers, directory, happy, process + }: + mkDerivation { + pname = "alex"; + version = "3.3.0.0"; + sha256 = "0qws6axn8a9iijhy6x8j3hjvm80sgw6ndxqhp9yc71vbxa2qw3w1"; + isLibrary = false; + isExecutable = true; + enableSeparateDataOutput = true; + executableHaskellDepends = [ array base containers directory ]; + executableToolDepends = [ happy ]; + testHaskellDepends = [ base process ]; + description = "Alex is a tool for generating lexical analysers in Haskell"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + mainProgram = "alex"; + }) {}; + "alex-meta" = callPackage ({ mkDerivation, alex, array, base, containers, happy , haskell-src-meta, QuickCheck, template-haskell @@ -27648,8 +27718,10 @@ self: { }: mkDerivation { pname = "alex-tools"; - version = "0.6"; - sha256 = "1khk9qxxj1al733a0bvbkla81370slgbiq37310nwll6ng06yh4a"; + version = "0.6.1"; + sha256 = "1nh8qbsv4sn6gxc7j8cbp2pb85cajilzhp8rchlwnk7bv8lzf8ji"; + revision = "1"; + editedCabalFile = "0s2gc18i5kvlwxnjkcwc3c5hmj9mg8bpj09wkl8hddmjscdlrjyk"; libraryHaskellDepends = [ base bytestring deepseq template-haskell text ]; @@ -27888,6 +27960,8 @@ self: { pname = "algebraic-graphs"; version = "0.6.1"; sha256 = "168aqkm7mfd4is95qwpyf9k0k95qf5rfnkhq5ydbr74jj4jrhr1d"; + revision = "1"; + editedCabalFile = "1lnzgy3z51jyl1ail3wdd817np84gzi2bplccwzbm72glwbakc5h"; libraryHaskellDepends = [ array base containers deepseq transformers ]; @@ -27907,6 +27981,8 @@ self: { pname = "algebraic-graphs"; version = "0.7"; sha256 = "0s75h92qb9jdfdyzh0fraxpzj0jl4xvcbqq9cwgba2k9306rl5ai"; + revision = "1"; + editedCabalFile = "1z9xls7riv3rlp1vjymvj7z64y8w0x3865d2ad2dzrwsdgzcsndf"; libraryHaskellDepends = [ array base containers deepseq transformers ]; @@ -28146,8 +28222,8 @@ self: { pname = "align-audio"; version = "0.0"; sha256 = "0sa7q5fzkc0z4vzibs5l21pvrkil0swdpbl27qn30vb6giy3yh7a"; - revision = "1"; - editedCabalFile = "1599vbnfalrnq0zgwmh47k62y9yq30agpjyyfwdzxzszhc0vfq6n"; + revision = "2"; + editedCabalFile = "1225s8vbwfblyzfbfv7b2v4xcxlp0aavaaivmx5154xlba56n10s"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -32003,7 +32079,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "annah"; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "annihilator" = callPackage @@ -32133,16 +32209,16 @@ self: { license = lib.licenses.bsd3; }) {}; - "ansi-terminal_0_11_5" = callPackage + "ansi-terminal_1_0" = callPackage ({ mkDerivation, ansi-terminal-types, base, colour }: mkDerivation { pname = "ansi-terminal"; - version = "0.11.5"; - sha256 = "1jwpq3l7ipzjpd6b8gc2df2k5hsh3b9w555ny20q6mgbapfcwjjv"; + version = "1.0"; + sha256 = "1jfgsnywzyipxg64xqgiyvq4af7wjnx4g8hazysn57hqg67sk607"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ ansi-terminal-types base colour ]; - description = "Simple ANSI terminal support, with Windows compatibility"; + description = "Simple ANSI terminal support"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; }) {}; @@ -32174,7 +32250,7 @@ self: { license = lib.licenses.gpl3Only; }) {}; - "ansi-terminal-game_1_9_1_1" = callPackage + "ansi-terminal-game_1_9_1_3" = callPackage ({ mkDerivation, ansi-terminal, array, base, bytestring, cereal , clock, colour, containers, exceptions, hspec, hspec-discover , linebreak, mintty, mtl, QuickCheck, random, split, terminal-size @@ -32182,8 +32258,8 @@ self: { }: mkDerivation { pname = "ansi-terminal-game"; - version = "1.9.1.1"; - sha256 = "11i1kkmi65l49nmvbzjvpnz9xysfp71i2vrfiqbpvnrz9pmv5blr"; + version = "1.9.1.3"; + sha256 = "0ln6cx98g7nv6yv600m7p721pscln1c10wkmmykwlfvsrrvnvk7w"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -32221,8 +32297,8 @@ self: { pname = "ansi-wl-pprint"; version = "0.6.9"; sha256 = "1b2fg8px98dzbaqyns10kvs8kn6cl1hdq5wb9saz40izrpkyicm7"; - revision = "3"; - editedCabalFile = "1km10sx7ldyv1vfyljik1gqnrwl7bnq2s5m40w41gc930vm48891"; + revision = "4"; + editedCabalFile = "04ljsk64bzwsczh0zc5w3r98qr1zlzbwwm2xb6nk9vradv4pnwzv"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ ansi-terminal base ]; @@ -32230,6 +32306,22 @@ self: { license = lib.licenses.bsd3; }) {}; + "ansi-wl-pprint_1_0_2" = callPackage + ({ mkDerivation, base, prettyprinter-compat-ansi-wl-pprint }: + mkDerivation { + pname = "ansi-wl-pprint"; + version = "1.0.2"; + sha256 = "0ir7mxvdxm94i09j0lf415pylczzws8f2d8n29nldrbql49ihki3"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base prettyprinter-compat-ansi-wl-pprint + ]; + description = "The Wadler/Leijen Pretty Printer for colored ANSI terminal output"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "ansigraph" = callPackage ({ mkDerivation, ansi-terminal, base, hspec, QuickCheck }: mkDerivation { @@ -32898,6 +32990,17 @@ self: { license = lib.licenses.bsd3; }) {}; + "apecs-effectful" = callPackage + ({ mkDerivation, apecs, base, effectful-core, vector }: + mkDerivation { + pname = "apecs-effectful"; + version = "0.1.0.0"; + sha256 = "1bd7ga74m07ck49z22jkjiyjxng0cv1dkrv560195fv436wwfzdi"; + libraryHaskellDepends = [ apecs base effectful-core vector ]; + description = "Adaptation of the apecs library for the effectful ecosystem"; + license = lib.licenses.bsd3; + }) {}; + "apecs-gloss" = callPackage ({ mkDerivation, apecs, apecs-physics, base, containers, gloss , linear @@ -34406,10 +34509,8 @@ self: { }: mkDerivation { pname = "arch-hs"; - version = "0.11.0.0"; - sha256 = "0zl9lsz9bhzyd4vd61q0rkawb7iyghk9cb5pzm4gm4y9d9hayw0p"; - revision = "1"; - editedCabalFile = "0gkbiyqjslrfa6zfik9zhf3ccrgdv9fh29rbgsl3qky8vq88dg3h"; + version = "0.11.1.0"; + sha256 = "1f50id3xplp8zwi379n6xi4in01gms97qbqnfxnsqzrv47xszwj4"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -34441,10 +34542,8 @@ self: { }: mkDerivation { pname = "arch-web"; - version = "0.1.1"; - sha256 = "1qlx1md7hzxv5cxv3jsiyc0rrbrg2m38b0w27i7bdyd1dlpnyy0d"; - revision = "1"; - editedCabalFile = "1342nvrxz8g6q96swxvvbvs1g34s82lhrx02xq371cv70svyq2bk"; + version = "0.2"; + sha256 = "0axyb62pjgh1l60qx6z8mppiq5gam3g6c9wfbrww8wl7f2kamwrp"; libraryHaskellDepends = [ aeson base deriving-aeson exceptions http-client http-client-tls http-types lens mtl servant servant-client servant-client-core text @@ -35637,6 +35736,8 @@ self: { pname = "ascii-char"; version = "1.0.1.0"; sha256 = "1fls3yw3gs36hwqp32pn7mfibkspx5a80k32wybzc3hfp4qyymlv"; + revision = "1"; + editedCabalFile = "1f4v2vxpj2f3783xlqm1iay46wj78m1r0byiw01s5f81j49ldpgf"; libraryHaskellDepends = [ base hashable ]; testHaskellDepends = [ base hspec ]; description = "A Char type representing an ASCII character"; @@ -37791,6 +37892,8 @@ self: { pname = "attoparsec-run"; version = "0.0.2.0"; sha256 = "0j9mj61aa4hw4j2z73fxjb1py8yhznk3irw2cqs9l40kmqlf0gz8"; + revision = "1"; + editedCabalFile = "1hvp37nr4pa8y3685444fhw8ah8b8bh65sbjca3cy15f99z9bbxp"; libraryHaskellDepends = [ attoparsec base bytestring mtl text ]; testHaskellDepends = [ attoparsec base bytestring hspec mtl text ]; description = "Conveniently run Attoparsec parsers"; @@ -40341,8 +40444,8 @@ self: { }: mkDerivation { pname = "balkon"; - version = "0.3.0.0"; - sha256 = "0kfg294f4h37vb9h0v54wfvmrw6pfh90yc6zjlbgk4kszvqx44jk"; + version = "1.1.0.0"; + sha256 = "0836mr88x8qqphv0mp9brbcggjpyz4id3z0n7rbrazg4gy343pyy"; libraryHaskellDepends = [ base harfbuzz-pure text text-icu unicode-data-scripts ]; @@ -42004,6 +42107,28 @@ self: { license = lib.licenses.mit; }) {}; + "bcp47-orphans_0_1_0_6" = callPackage + ({ mkDerivation, base, bcp47, cassava, errors, esqueleto, hashable + , hspec, http-api-data, path-pieces, persistent, QuickCheck + , serialise, text + }: + mkDerivation { + pname = "bcp47-orphans"; + version = "0.1.0.6"; + sha256 = "18r6wwj7sq5q1r9fg0kiss5p7h0qh485paginrc46lzygx4l5r3q"; + libraryHaskellDepends = [ + base bcp47 cassava errors esqueleto hashable http-api-data + path-pieces persistent serialise text + ]; + testHaskellDepends = [ + base bcp47 cassava hspec path-pieces persistent QuickCheck + serialise + ]; + description = "BCP47 orphan instances"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "bcrypt" = callPackage ({ mkDerivation, base, bytestring, data-default, entropy, memory }: mkDerivation { @@ -42675,7 +42800,7 @@ self: { description = "Command-line benchmark tool"; license = lib.licenses.bsd3; mainProgram = "bench"; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "bench-graph" = callPackage @@ -47859,6 +47984,31 @@ self: { mainProgram = "bm"; }) {}; + "bm_0_2_0_0" = callPackage + ({ mkDerivation, aeson, ansi-wl-pprint, base, directory, dlist + , filepath, network-uri, optparse-applicative, scientific, tasty + , tasty-hunit, text, transformers, typed-process, vector, yaml + }: + mkDerivation { + pname = "bm"; + version = "0.2.0.0"; + sha256 = "17dnv1vdsh43nc8b0p92d01nz1zvxd9bfcghlz0w6c8wc5yflg31"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base dlist network-uri scientific text transformers vector + ]; + executableHaskellDepends = [ + ansi-wl-pprint base directory filepath optparse-applicative + typed-process yaml + ]; + testHaskellDepends = [ base tasty tasty-hunit vector ]; + description = "open bookmarks and queries from the command line"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "bm"; + }) {}; + "bmp" = callPackage ({ mkDerivation, base, binary, bytestring }: mkDerivation { @@ -47881,6 +48031,8 @@ self: { pname = "bnb-staking-csvs"; version = "0.2.1.0"; sha256 = "1cvkfj1x0z7bv67ihzf3h8k4r4fpvdfjhiair32k08k52lz2q6h7"; + revision = "1"; + editedCabalFile = "1idi68azdq7frjdzc99zzvrmhj5q1lv94hf8a4024ginili7siys"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -48018,26 +48170,26 @@ self: { "boilerplate" = callPackage ({ mkDerivation, base, containers, directory, extra, filepath, ghc - , ghc-paths, hsinspect, HUnit, parsec, parsers, tasty + , ghc-boot, ghc-paths, hsinspect, HUnit, parsec, parsers, tasty , tasty-discover, tasty-hspec, text, transformers, vector }: mkDerivation { pname = "boilerplate"; - version = "0.0.2"; - sha256 = "187w058c237i0drz4cfzhb9ds3s915q5i7his4558sxy0r42xmsp"; + version = "0.0.3"; + sha256 = "15zij16yc9zqy1amvxwn9hmillifhk3c8pmf8m1r3p1xx9qh66da"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base containers directory filepath ghc ghc-paths hsinspect parsers - text transformers vector + base containers directory filepath ghc ghc-boot ghc-paths hsinspect + parsers text transformers vector ]; executableHaskellDepends = [ - base containers directory filepath ghc hsinspect parsec text - transformers + base containers directory filepath ghc ghc-boot hsinspect parsec + text transformers ]; testHaskellDepends = [ - base containers directory extra filepath ghc hsinspect HUnit parsec - tasty tasty-hspec text transformers + base containers directory extra filepath ghc ghc-boot hsinspect + HUnit parsec tasty tasty-hspec text transformers ]; testToolDepends = [ tasty-discover ]; description = "Generate Haskell boilerplate"; @@ -48204,12 +48356,18 @@ self: { }) {}; "bookhound" = callPackage - ({ mkDerivation, base, containers, text, time }: + ({ mkDerivation, base, containers, hspec, hspec-discover + , QuickCheck, quickcheck-instances, text, time + }: mkDerivation { pname = "bookhound"; - version = "0.1.13.0"; - sha256 = "0cqm9v61mj1n11wfq5x92ckzjk9nq66gkx7gg857vx8crr9bspci"; + version = "0.1.25.0"; + sha256 = "0kdsr01iwnf9jzb4sfh7mcsnffzxmvfiziz5h2214py8ya3rbi5c"; libraryHaskellDepends = [ base containers text time ]; + testHaskellDepends = [ + base containers hspec QuickCheck quickcheck-instances text time + ]; + testToolDepends = [ hspec-discover ]; description = "Simple Parser Combinators"; license = "LGPL"; hydraPlatforms = lib.platforms.none; @@ -48220,8 +48378,8 @@ self: { ({ mkDerivation, base, bookhound, containers, text, time }: mkDerivation { pname = "bookhound-format"; - version = "0.1.1.0"; - sha256 = "18ccq70sjzcwic3mxqyqr7nwh8f3sk6dblnjzj2a5s2r8dykavb1"; + version = "0.1.2.0"; + sha256 = "1jrhvdc1dc23rmjfmp3w4yldvy55x4baljjq8l9ja992bl4y9rlb"; libraryHaskellDepends = [ base bookhound containers text time ]; description = "Parsers for usual data formats"; license = "LGPL"; @@ -48468,8 +48626,8 @@ self: { }: mkDerivation { pname = "boomerang"; - version = "1.4.8.1"; - sha256 = "1hal4z1c1skqjq7vvjql0gm2rhfgrrlj29rgchjwlr2hm22zgnjp"; + version = "1.4.9"; + sha256 = "0z1lnzskvna5wdc45iwwybrsgv302gfja8s9zlvhdyvjlrxv5sjw"; libraryHaskellDepends = [ base mtl semigroups template-haskell text th-abstraction ]; @@ -49230,7 +49388,7 @@ self: { libraryHaskellDepends = [ base mtl transformers ]; description = "Break from a loop"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "breakout" = callPackage @@ -49359,7 +49517,7 @@ self: { license = lib.licenses.bsd3; }) {}; - "brick_1_7" = callPackage + "brick_1_9" = callPackage ({ mkDerivation, base, bimap, bytestring, config-ini, containers , data-clist, deepseq, directory, exceptions, filepath, microlens , microlens-mtl, microlens-th, mtl, QuickCheck, stm @@ -49367,8 +49525,8 @@ self: { }: mkDerivation { pname = "brick"; - version = "1.7"; - sha256 = "0sbsf0an7bx2ngm53c2b3dm8rlr5ydh75kf2s5bi62n6k7m9398b"; + version = "1.9"; + sha256 = "023fmgq8bgv05jpsr5saisz1jpkimkjycm1xza9gx5sxf6z6sjz3"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -51602,8 +51760,8 @@ self: { }: mkDerivation { pname = "bytestring-aeson-orphans"; - version = "0.1.0.0"; - sha256 = "0zr61jaj84js39w849mkz7wfgxc9pn9dg09hmjb7x11d86v3m2nh"; + version = "0.1.0.1"; + sha256 = "0iv2kkdiqhd1yxizpp1dv40f3bvb9qx5qzk1b59fplg1hiqmdr9h"; libraryHaskellDepends = [ aeson base base64-bytestring bytestring text ]; @@ -52310,8 +52468,8 @@ self: { ({ mkDerivation, array, base, primitive, template-haskell }: mkDerivation { pname = "c-struct"; - version = "0.1.1.3"; - sha256 = "190xw0bjzmwzw3lav5cb7gs11wd42hj7a8pggn3nxrp46fvqf07i"; + version = "0.1.3.0"; + sha256 = "00n371zsjryf6zk0j1kdj53m9frph42lg7iapsch7sm3w2mlmp8a"; libraryHaskellDepends = [ array base primitive template-haskell ]; testHaskellDepends = [ array base primitive template-haskell ]; description = "To make a wrapper for struct of C language"; @@ -52985,8 +53143,8 @@ self: { }: mkDerivation { pname = "cabal-fmt"; - version = "0.1.6"; - sha256 = "0vbdcc89jl5iwblb57m9g2250miwq0db7rn449dcpknskfrfrrfr"; + version = "0.1.7"; + sha256 = "1j21ynngk937p7jq361zn5kq0wiwnn6lypqm4z8z9mwa9knc2sv3"; isLibrary = false; isExecutable = true; libraryHaskellDepends = [ @@ -53158,6 +53316,8 @@ self: { pname = "cabal-install"; version = "3.10.1.0"; sha256 = "13c3qx0qw7kizaj2dpgl2y3pj86pgqvmkck20w726jalamlf6pcr"; + revision = "1"; + editedCabalFile = "0h1ra9kw7mk70202whiphbdyvknm7jbhqhkgw4h8abb1sgffhs3n"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -53296,6 +53456,8 @@ self: { pname = "cabal-install-solver"; version = "3.10.1.0"; sha256 = "0dwzyjk9382wxxkmqf99mrpgbqpzxjqr4kxbz2dnwx6d9kfrw39c"; + revision = "1"; + editedCabalFile = "1l3qhaiv0m2xc5vscggd2drinam1k4x0l3vfvvz15xrpvxypdv4d"; libraryHaskellDepends = [ array base bytestring Cabal Cabal-syntax containers edit-distance filepath mtl pretty transformers @@ -53491,8 +53653,8 @@ self: { }: mkDerivation { pname = "cabal-plan-bounds"; - version = "0.1.3"; - sha256 = "0bngpl6j5q11axra38802qgyh1crghdq89dsfpfhyllyrkcmwci6"; + version = "0.1.3.1"; + sha256 = "0cyvmzgfzw6x2rl9jsswqgzxcvffjzc0px48ia22852vqa9qw1ax"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -54328,37 +54490,39 @@ self: { ({ mkDerivation, aeson, async, base, base64-bytestring, bytestring , cachix-api, concurrent-extra, conduit, conduit-concurrent-map , conduit-extra, conduit-zstd, containers, cookie, cryptonite - , deepseq, dhall, direct-sqlite, directory, ed25519, either, extra - , filepath, fsnotify, here, hnix-store-core, hspec, hspec-discover - , http-client, http-client-tls, http-conduit, http-types, katip - , lukko, lzma-conduit, megaparsec, memory, mmorph, netrc - , network-uri, optparse-applicative, pretty-terminal, prettyprinter - , process, protolude, resourcet, retry, safe-exceptions, servant - , servant-auth, servant-auth-client, servant-client - , servant-client-core, servant-conduit, stm, stm-chans, stm-conduit - , systemd, temporary, text, time, unix, unordered-containers - , uri-bytestring, uuid, vector, versions, websockets, wuss + , deepseq, dhall, directory, ed25519, either, extra, filepath + , fsnotify, hercules-ci-cnix-store, here, hnix-store-core, hspec + , hspec-discover, http-client, http-client-tls, http-conduit + , http-types, inline-c-cpp, katip, lukko, lzma-conduit, megaparsec + , memory, mmorph, netrc, network-uri, nix, optparse-applicative + , pretty-terminal, prettyprinter, process, protolude, resourcet + , retry, safe-exceptions, servant, servant-auth + , servant-auth-client, servant-client, servant-client-core + , servant-conduit, stm, stm-chans, stm-conduit, systemd, temporary + , text, time, unix, unordered-containers, uri-bytestring, uuid + , vector, versions, websockets, wuss }: mkDerivation { pname = "cachix"; - version = "1.4.2"; - sha256 = "09fpbcghaz8423has79kzjd954mxg5lkjg0k6rz6834gv5p0z5bq"; + version = "1.5"; + sha256 = "1ync5hbyr4yyiv6513f57am8n8985sn3pd860cs4jp9rvc6w7am9"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson async base base64-bytestring bytestring cachix-api concurrent-extra conduit conduit-concurrent-map conduit-extra - conduit-zstd containers cookie cryptonite deepseq dhall - direct-sqlite directory ed25519 either extra filepath fsnotify here + conduit-zstd containers cookie cryptonite deepseq dhall directory + ed25519 either extra filepath fsnotify hercules-ci-cnix-store here hnix-store-core http-client http-client-tls http-conduit http-types - katip lukko lzma-conduit megaparsec memory mmorph netrc network-uri - optparse-applicative pretty-terminal prettyprinter process - protolude resourcet retry safe-exceptions servant servant-auth - servant-auth-client servant-client servant-client-core - servant-conduit stm stm-chans stm-conduit systemd temporary text - time unix unordered-containers uri-bytestring uuid vector versions - websockets wuss + inline-c-cpp katip lukko lzma-conduit megaparsec memory mmorph + netrc network-uri optparse-applicative pretty-terminal + prettyprinter process protolude resourcet retry safe-exceptions + servant servant-auth servant-auth-client servant-client + servant-client-core servant-conduit stm stm-chans stm-conduit + systemd temporary text time unix unordered-containers + uri-bytestring uuid vector versions websockets wuss ]; + libraryPkgconfigDepends = [ nix ]; executableHaskellDepends = [ aeson async base cachix-api conduit http-conduit katip protolude safe-exceptions stm stm-chans stm-conduit time uuid websockets wuss @@ -54371,7 +54535,7 @@ self: { description = "Command line client for Nix binary cache hosting https://cachix.org"; license = lib.licenses.asl20; maintainers = [ lib.maintainers.domenkozar ]; - }) {}; + }) {inherit (pkgs) nix;}; "cachix-api" = callPackage ({ mkDerivation, aeson, async, base, base16-bytestring, bytestring @@ -54385,8 +54549,8 @@ self: { }: mkDerivation { pname = "cachix-api"; - version = "1.4.2"; - sha256 = "018n0ifhrajjjyq0r9scg8ifjrz3w7q58p1qfak1hwh7a1wdyxsx"; + version = "1.5"; + sha256 = "14gy5lhd7q72ypx8fngvqxjgpy58v7wl7gkivwq851lzyn3fxfdq"; libraryHaskellDepends = [ aeson async base base16-bytestring bytestring conduit cookie cryptonite deepseq deriving-aeson exceptions http-api-data @@ -54502,8 +54666,8 @@ self: { }: mkDerivation { pname = "cairo"; - version = "0.13.8.2"; - sha256 = "1sq2imy359vnbny610n7655a4z5a8fgdxanys4f5nw84246hc2yl"; + version = "0.13.10.0"; + sha256 = "16dwjqg8gqk2dzp3qpcvhwdgn16rxxasll8qs2fl2gf84z41h0mf"; enableSeparateDataOutput = true; setupHaskellDepends = [ base Cabal gtk2hs-buildtools ]; libraryHaskellDepends = [ @@ -54932,24 +55096,6 @@ self: { }: mkDerivation { pname = "call-plantuml"; - version = "0.0.1.1"; - sha256 = "0wipnjcwv4d92vh1nmf228gf8bdy2yc0fana0a7zg5fxkaqznq0v"; - enableSeparateDataOutput = true; - libraryHaskellDepends = [ async base bytestring filepath process ]; - testHaskellDepends = [ - async base bytestring filepath hspec process - ]; - description = "A simple library to call PlantUML given a diagram specification"; - license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; - broken = true; - }) {}; - - "call-plantuml_0_0_1_2" = callPackage - ({ mkDerivation, async, base, bytestring, filepath, hspec, process - }: - mkDerivation { - pname = "call-plantuml"; version = "0.0.1.2"; sha256 = "1n4b079nj637djar5a7jdmqjr1mk2b4x2r0iipzrf2iwhvcw3mfk"; enableSeparateDataOutput = true; @@ -57043,18 +57189,16 @@ self: { }: mkDerivation { pname = "cborg"; - version = "0.2.8.0"; - sha256 = "07mh5bk61k5dz2x5g7fqw2cv7bjzs7v65yxvzkq7mdbkq8kwhn9f"; - revision = "3"; - editedCabalFile = "0a6lgb9qjxp9l2bkdzs048b672dcvaa4ifvxcdj5c9whfdhfl04d"; + version = "0.2.9.0"; + sha256 = "1apwdb0y08l3mbxb6pb006355nnn1lag035dvm006v7h4cbqvd6w"; libraryHaskellDepends = [ array base bytestring containers deepseq ghc-bignum ghc-prim half primitive text ]; testHaskellDepends = [ aeson array base base-orphans base16-bytestring base64-bytestring - bytestring deepseq half QuickCheck random scientific tasty - tasty-hunit tasty-quickcheck text vector + bytestring deepseq half primitive QuickCheck random scientific + tasty tasty-hunit tasty-quickcheck text vector ]; description = "Concise Binary Object Representation (CBOR)"; license = lib.licenses.bsd3; @@ -58852,6 +58996,17 @@ self: { license = lib.licenses.bsd3; }) {}; + "chessica" = callPackage + ({ mkDerivation, base, containers }: + mkDerivation { + pname = "chessica"; + version = "0.1.0.0"; + sha256 = "1ydsfb8cfasdqn5hmcp46cs66qgycba733zdyn1dfq858f6xj76d"; + libraryHaskellDepends = [ base containers ]; + description = "A Library for Chess Game Logic"; + license = lib.licenses.bsd3; + }) {}; + "chevalier-common" = callPackage ({ mkDerivation, base, bifunctors, bytestring, cereal, locators , mtl, network, network-uri, protobuf, text, unordered-containers @@ -60571,8 +60726,6 @@ self: { ]; description = "Clash: a functional hardware description language - Prelude library"; license = lib.licenses.bsd2; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "clash-prelude-hedgehog" = callPackage @@ -62827,6 +62980,8 @@ self: { pname = "co-log-core"; version = "0.3.2.0"; sha256 = "1r8yq4wan48mm37p32vsym44icdx4c5dyc5wkm5vz8f4l39yv59l"; + revision = "1"; + editedCabalFile = "0ljr9pam99q2mgqig8yf1pmz5j0jxk6dq9c2rvzyc4jbv6bnbwnf"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base doctest Glob ]; description = "Composable Contravariant Comonadic Logging Library"; @@ -63583,6 +63738,31 @@ self: { license = lib.licenses.bsd3; }) {}; + "coinor-clp" = callPackage + ({ mkDerivation, base, clp, comfort-array, deepseq + , doctest-exitcode-stdio, doctest-lib, linear-programming + , non-empty, QuickCheck, random, transformers, utility-ht + }: + mkDerivation { + pname = "coinor-clp"; + version = "0.0"; + sha256 = "1wfi1f4g3n0prks74iww5092nkiyl0d6hmf2yfqlvj6zwcly3kfn"; + libraryHaskellDepends = [ + base comfort-array deepseq linear-programming non-empty QuickCheck + transformers utility-ht + ]; + libraryPkgconfigDepends = [ clp ]; + testHaskellDepends = [ + base comfort-array doctest-exitcode-stdio doctest-lib + linear-programming non-empty QuickCheck random transformers + utility-ht + ]; + description = "Linear Programming using COIN-OR/CLP and comfort-array"; + license = lib.licenses.bsd3; + badPlatforms = [ "aarch64-linux" ]; + maintainers = [ lib.maintainers.thielema ]; + }) {inherit (pkgs) clp;}; + "cointracking-imports" = callPackage ({ mkDerivation, base, base-compat-batteries, bytestring, cassava , filepath, hedgehog, lens, scientific, tasty, tasty-hedgehog @@ -64045,6 +64225,24 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "colour-text" = callPackage + ({ mkDerivation, base, colour, hedgehog, hspec, hspec-hedgehog + , text + }: + mkDerivation { + pname = "colour-text"; + version = "0.0.0.0"; + sha256 = "017gxsplb66dj08s6jcb0qxx0ydplfsadwpxfy1a4vhq2mc1pwp6"; + revision = "1"; + editedCabalFile = "106zw7p0bg3ayz5f0h43jj4kayk43bzagp109ych7vnilkgjyav8"; + libraryHaskellDepends = [ base colour text ]; + testHaskellDepends = [ + base colour hedgehog hspec hspec-hedgehog text + ]; + description = "Print and parse colors"; + license = lib.licenses.asl20; + }) {}; + "colourista" = callPackage ({ mkDerivation, ansi-terminal, base, bytestring, hspec, text }: mkDerivation { @@ -64429,20 +64627,22 @@ self: { "comfort-glpk" = callPackage ({ mkDerivation, base, comfort-array, deepseq , doctest-exitcode-stdio, doctest-lib, glpk, glpk-headers - , non-empty, QuickCheck, random, transformers, utility-ht + , linear-programming, non-empty, QuickCheck, random, transformers + , utility-ht }: mkDerivation { pname = "comfort-glpk"; - version = "0.0.1"; - sha256 = "18n6nbq8gf3lx05xxak8k8frk1qhivh1hg83i0qxvabgfxl6gvxg"; + version = "0.1"; + sha256 = "06396jgbaxvm2gwksra6gjwqczsvdlif9lal46a8q5sc5cyhcpx1"; libraryHaskellDepends = [ - base comfort-array deepseq glpk-headers non-empty transformers - utility-ht + base comfort-array deepseq glpk-headers linear-programming + non-empty transformers utility-ht ]; librarySystemDepends = [ glpk ]; testHaskellDepends = [ - base comfort-array doctest-exitcode-stdio doctest-lib non-empty - QuickCheck random utility-ht + base comfort-array doctest-exitcode-stdio doctest-lib + linear-programming non-empty QuickCheck random transformers + utility-ht ]; description = "Linear Programming using GLPK and comfort-array"; license = lib.licenses.bsd3; @@ -65107,25 +65307,12 @@ self: { ({ mkDerivation, base, containers, hspec, QuickCheck, vector }: mkDerivation { pname = "compactmap"; - version = "0.1.4.2.1"; - sha256 = "0x7ps0pnjnyfr2pyjk839z7dwidizkcqwi29zxy2pgvq5856w5i2"; - libraryHaskellDepends = [ base vector ]; - testHaskellDepends = [ base containers hspec QuickCheck ]; - description = "A read-only memory-efficient key-value store"; - license = lib.licenses.bsd3; - }) {}; - - "compactmap_0_1_4_3" = callPackage - ({ mkDerivation, base, containers, hspec, QuickCheck, vector }: - mkDerivation { - pname = "compactmap"; version = "0.1.4.3"; sha256 = "0c02gkshlm1dppqzws3yg96h3k8jpkvbqi461509b1hbxzg04m27"; libraryHaskellDepends = [ base vector ]; testHaskellDepends = [ base containers hspec QuickCheck ]; description = "A read-only memory-efficient key-value store"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "compare-type" = callPackage @@ -66512,8 +66699,8 @@ self: { }: mkDerivation { pname = "concurrent-output"; - version = "1.10.17"; - sha256 = "12dmpjdiv3y1jnljvsbx258plzjvsjnizn25csmy7w4scfbrjl0b"; + version = "1.10.18"; + sha256 = "1nxc7wl37hsyz8axzy99gy40qsa6065z6m9a9pfjkgfq4s4k7a5p"; libraryHaskellDepends = [ ansi-terminal async base directory exceptions process stm terminal-size text transformers unix @@ -66774,17 +66961,14 @@ self: { "conduit" = callPackage ({ mkDerivation, base, bytestring, containers, deepseq, directory - , exceptions, filepath, gauge, hspec, kan-extensions - , mono-traversable, mtl, mwc-random, primitive, QuickCheck - , resourcet, safe, silently, split, text, transformers, unix - , unliftio, unliftio-core, vector + , exceptions, filepath, gauge, hspec, mono-traversable, mtl + , mwc-random, primitive, QuickCheck, resourcet, safe, silently + , split, text, transformers, unix, unliftio, unliftio-core, vector }: mkDerivation { pname = "conduit"; - version = "1.3.4.3"; - sha256 = "0zchhxcpciq4nr7ll4z4c7wshlngphr0dz0y3xfml1pfls3a18mc"; - revision = "1"; - editedCabalFile = "0fsvnlx8gd9d8f70f6gl68ljhmff790anrifrixcflz0j2kfxwjh"; + version = "1.3.5"; + sha256 = "0bbq3hr0y4hyia8dbqibfpg5q5zr2ici5hngv38y6hycxvhd7c1b"; libraryHaskellDepends = [ base bytestring directory exceptions filepath mono-traversable mtl primitive resourcet text transformers unix unliftio-core vector @@ -66795,8 +66979,7 @@ self: { transformers unliftio vector ]; benchmarkHaskellDepends = [ - base containers deepseq gauge hspec kan-extensions mwc-random - transformers vector + base containers deepseq gauge hspec mwc-random transformers vector ]; description = "Streaming data processing library"; license = lib.licenses.mit; @@ -67573,8 +67756,6 @@ self: { ]; description = "conferer's FromConfig instances for warp settings"; license = lib.licenses.mpl20; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "conferer-yaml" = callPackage @@ -68267,8 +68448,8 @@ self: { }: mkDerivation { pname = "constrained-categories"; - version = "0.4.1.0"; - sha256 = "0n9xi24jc590hmhz8b8g6rhfkbapq62h74mjkhs4mcsj58inx90p"; + version = "0.4.2.0"; + sha256 = "1hxs5b5ppjynhs6b63dqfxzni79bkb1gkyx4a7h2w62xxnn6738y"; libraryHaskellDepends = [ base contravariant fail semigroups tagged trivial-constraint void ]; @@ -68505,6 +68686,8 @@ self: { pname = "constraints-extras"; version = "0.4.0.0"; sha256 = "1irf4kd7a5h1glczbc73c3590m58azn4s68nfrjfg1h96i7mjfgn"; + revision = "1"; + editedCabalFile = "1fdabah3ilq9yf94916ml3c3rxgcgab1jhzl4mk1zgzsw78j53qf"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base constraints template-haskell ]; @@ -69990,20 +70173,20 @@ self: { "core-program" = callPackage ({ mkDerivation, base, bytestring, core-data, core-text, directory - , exceptions, filepath, fsnotify, hashable, hourglass, mtl - , prettyprinter, safe-exceptions, stm, template-haskell + , exceptions, filepath, fsnotify, githash, hashable, hourglass, mtl + , prettyprinter, process, safe-exceptions, stm, template-haskell , terminal-size, text, text-short, transformers, typed-process , unix, unliftio-core }: mkDerivation { pname = "core-program"; - version = "0.6.6.0"; - sha256 = "0s29n16nmk9w0yg8agwjgxg6h2f3xbsf1ah74g08m0inskq96s9h"; + version = "0.6.8.0"; + sha256 = "1r65a5bbz0clh6by0p56ynwv6c1xia01pap8fmsbcglgzifwxk9w"; libraryHaskellDepends = [ base bytestring core-data core-text directory exceptions filepath - fsnotify hashable hourglass mtl prettyprinter safe-exceptions stm - template-haskell terminal-size text text-short transformers - typed-process unix unliftio-core + fsnotify githash hashable hourglass mtl prettyprinter process + safe-exceptions stm template-haskell terminal-size text text-short + transformers typed-process unix unliftio-core ]; description = "Opinionated Haskell Interoperability"; license = lib.licenses.mit; @@ -70086,8 +70269,8 @@ self: { }: mkDerivation { pname = "core-webserver-warp"; - version = "0.2.1.0"; - sha256 = "0j7bbs7fbzzk2czz5hxmd15vgx6gh73n65z1r1wbsb9f8zaw34fg"; + version = "0.2.1.2"; + sha256 = "0117h6nsgvm860q3756mwp66paf6lncq1aibs04nw8vlya116s9d"; libraryHaskellDepends = [ async base bytestring bytestring-trie core-data core-program core-telemetry core-text http-types http2 mtl safe-exceptions vault @@ -71637,32 +71820,30 @@ self: { mainProgram = "criterion-report"; }) {}; - "criterion_1_6_0_0" = callPackage - ({ mkDerivation, aeson, ansi-wl-pprint, base, base-compat - , base-compat-batteries, binary, binary-orphans, bytestring - , cassava, code-page, containers, criterion-measurement, deepseq - , directory, exceptions, filepath, Glob, HUnit, js-chart - , microstache, mtl, mwc-random, optparse-applicative, parsec - , QuickCheck, statistics, tasty, tasty-hunit, tasty-quickcheck - , text, time, transformers, transformers-compat, vector - , vector-algorithms + "criterion_1_6_2_0" = callPackage + ({ mkDerivation, aeson, base, base-compat, base-compat-batteries + , binary, binary-orphans, bytestring, cassava, code-page + , containers, criterion-measurement, deepseq, directory, exceptions + , filepath, Glob, HUnit, js-chart, microstache, mtl, mwc-random + , optparse-applicative, parsec, prettyprinter + , prettyprinter-ansi-terminal, QuickCheck, statistics, tasty + , tasty-hunit, tasty-quickcheck, text, time, transformers + , transformers-compat, vector, vector-algorithms }: mkDerivation { pname = "criterion"; - version = "1.6.0.0"; - sha256 = "1c2jl881bb3g4w037dx4bs3s164s306vayw2jxd9k3hmrnffyaa0"; - revision = "1"; - editedCabalFile = "1sq1izskw1j1dxrdak8zxv22q3cvxg7s9wvxx3l2gj0165xj83bc"; + version = "1.6.2.0"; + sha256 = "1yiish22n4x9zh1gl6bf1rnbcimgad87dgkxk663hzc78683q2dm"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ - aeson ansi-wl-pprint base base-compat-batteries binary - binary-orphans bytestring cassava code-page containers - criterion-measurement deepseq directory exceptions filepath Glob - js-chart microstache mtl mwc-random optparse-applicative parsec - statistics text time transformers transformers-compat vector - vector-algorithms + aeson base base-compat-batteries binary binary-orphans bytestring + cassava code-page containers criterion-measurement deepseq + directory exceptions filepath Glob js-chart microstache mtl + mwc-random optparse-applicative parsec prettyprinter + prettyprinter-ansi-terminal statistics text time transformers + transformers-compat vector vector-algorithms ]; executableHaskellDepends = [ base base-compat-batteries optparse-applicative @@ -74519,19 +74700,19 @@ self: { "dahdit" = callPackage ({ mkDerivation, base, bytestring, containers, data-default , data-sword, free, mtl, primitive, tasty, tasty-hunit - , transformers + , transformers, vector }: mkDerivation { pname = "dahdit"; - version = "0.1.4"; - sha256 = "01ixh5rl5ls09zrmz50ph81swx28gn7aw3zslj7bbc5fldqdfgzl"; + version = "0.3.0"; + sha256 = "0c95v3n7x7z6jgppd8l9x8xqhx6nqx34j66q52k746b0aam5wf2i"; libraryHaskellDepends = [ base bytestring containers data-default data-sword free mtl - primitive transformers + primitive transformers vector ]; testHaskellDepends = [ base bytestring containers data-default data-sword free mtl - primitive tasty tasty-hunit transformers + primitive tasty tasty-hunit transformers vector ]; description = "Binary parsing and serialization with integrated size"; license = lib.licenses.bsd3; @@ -75702,6 +75883,25 @@ self: { broken = true; }) {}; + "data-diverse_4_7_1_0" = callPackage + ({ mkDerivation, base, containers, criterion, deepseq, ghc-prim + , hashable, hspec, tagged + }: + mkDerivation { + pname = "data-diverse"; + version = "4.7.1.0"; + sha256 = "102d9zmbbwwav01q6190ggdiw49jkx2j0j60zslc59nqhlm2qwlq"; + libraryHaskellDepends = [ + base containers deepseq ghc-prim hashable tagged + ]; + testHaskellDepends = [ base hspec tagged ]; + benchmarkHaskellDepends = [ base criterion ]; + description = "Extensible records and polymorphic variants"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "data-diverse-lens" = callPackage ({ mkDerivation, base, data-diverse, data-has, hspec, lens , profunctors, tagged @@ -78281,6 +78481,8 @@ self: { pname = "dear-imgui"; version = "2.1.3"; sha256 = "1czb3g51wh761r0s7d9v47fyx926r1prp3agi5cxpa34vwmghr9x"; + revision = "1"; + editedCabalFile = "14i9spw9cwqilhhj45aq51dsvhlln4rfddsml8wh6i1dkzl1sa17"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -79480,6 +79682,8 @@ self: { pname = "dependency"; version = "1.2.0.3"; sha256 = "1zwqbx9fd02jjb40clq2r6isafgphmfkd0ai1w60kygb4cib7nkx"; + revision = "1"; + editedCabalFile = "12slp19kr21j8919nfx08bci7c1r70pldjrgg4sxsav35ihsyyjg"; libraryHaskellDepends = [ ansi-wl-pprint base binary containers deepseq microlens ]; @@ -79624,6 +79828,8 @@ self: { pname = "dependent-sum"; version = "0.7.2.0"; sha256 = "1frw5965v8i6xqdgs95gg8asgdqcqnmfahz0pmbwiaw5ybn62rc2"; + revision = "1"; + editedCabalFile = "0qybk8x6gyvg8pgf84mywlfajlcvg9pp4rs1wfn9fa7ns6sms88n"; libraryHaskellDepends = [ base constraints-extras some ]; description = "Dependent sum type"; license = lib.licenses.publicDomain; @@ -80257,20 +80463,20 @@ self: { "desktop-portal" = callPackage ({ mkDerivation, base, binary, bytestring, containers - , data-default-class, dbus, hspec, hspec-discover, process, random - , text + , data-default-class, dbus, hspec, hspec-discover + , hspec-expectations, modern-uri, process, random, text }: mkDerivation { pname = "desktop-portal"; - version = "0.1.0.0"; - sha256 = "1mk4gxg18c2dkpbdsp11w89fmk107jvv0nx1al9y8wf7rqsdd29l"; + version = "0.2.0.0"; + sha256 = "0h5zdkr165jgpg5v2r16d4d77k3brqyn99imnfd6gavgddm41r1r"; libraryHaskellDepends = [ - base binary bytestring containers data-default-class dbus random - text + base binary bytestring containers data-default-class dbus + modern-uri random text ]; testHaskellDepends = [ base binary bytestring containers data-default-class dbus hspec - process random text + hspec-expectations modern-uri process random text ]; testToolDepends = [ hspec-discover ]; description = "Desktop Portal"; @@ -80631,7 +80837,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "dhall"; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "dhall_1_38_1" = callPackage @@ -80690,7 +80896,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "dhall"; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "dhall" = callPackage @@ -80776,7 +80982,7 @@ self: { description = "A configuration language guaranteed to terminate"; license = lib.licenses.bsd3; mainProgram = "dhall"; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "dhall_1_42_0" = callPackage @@ -80862,7 +81068,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "dhall"; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "dhall-bash" = callPackage @@ -80887,7 +81093,7 @@ self: { description = "Compile Dhall to Bash"; license = lib.licenses.bsd3; mainProgram = "dhall-to-bash"; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "dhall-bash_1_0_41" = callPackage @@ -80913,7 +81119,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "dhall-to-bash"; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "dhall-check" = callPackage @@ -80997,7 +81203,7 @@ self: { description = "Generate HTML docs from a dhall package"; license = lib.licenses.bsd3; mainProgram = "dhall-docs"; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "dhall-fly" = callPackage @@ -81064,7 +81270,7 @@ self: { ]; description = "Convert between Dhall and JSON or YAML"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "dhall-json_1_7_12" = callPackage @@ -81095,7 +81301,7 @@ self: { description = "Convert between Dhall and JSON or YAML"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "dhall-lex" = callPackage @@ -81145,7 +81351,7 @@ self: { description = "Language Server Protocol (LSP) server for Dhall"; license = lib.licenses.mit; mainProgram = "dhall-lsp-server"; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "dhall-nix" = callPackage @@ -81170,7 +81376,7 @@ self: { description = "Dhall to Nix compiler"; license = lib.licenses.bsd3; mainProgram = "dhall-to-nix"; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "dhall-nix_1_1_26" = callPackage @@ -81194,7 +81400,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "dhall-to-nix"; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "dhall-nixpkgs" = callPackage @@ -81220,7 +81426,7 @@ self: { description = "Convert Dhall projects to Nix packages"; license = lib.licenses.bsd3; mainProgram = "dhall-to-nixpkgs"; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "dhall-nixpkgs_1_0_10" = callPackage @@ -81245,7 +81451,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "dhall-to-nixpkgs"; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "dhall-openapi" = callPackage @@ -81271,7 +81477,7 @@ self: { description = "Convert an OpenAPI specification to a Dhall package"; license = lib.licenses.bsd3; mainProgram = "openapi-to-dhall"; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "dhall-recursive-adt" = callPackage @@ -81341,7 +81547,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "dhall-to-text"; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; broken = true; }) {}; @@ -81446,7 +81652,7 @@ self: { ]; description = "Convert between Dhall and YAML"; license = lib.licenses.gpl3Only; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "dhcp-lease-parser" = callPackage @@ -81818,10 +82024,8 @@ self: { }: mkDerivation { pname = "diagrams-core"; - version = "1.5.0.1"; - sha256 = "1gv1p5hrxi3hks0nb4l38gdgfq9bh9d86b6dxcyzqxrwxbxk1khn"; - revision = "1"; - editedCabalFile = "1gahbyv00xyr4pcmpq4g95jyh7844fp8z0g9l2ybifv4s73vdrym"; + version = "1.5.1"; + sha256 = "08bmb2r4gf7arc0wasxla6w1qpgrgrhcs24bb7sv2qgiyb6c22j6"; libraryHaskellDepends = [ adjunctions base containers distributive dual-tree lens linear monoid-extras mtl profunctors semigroups unordered-containers @@ -82010,26 +82214,26 @@ self: { license = lib.licenses.bsd3; }) {}; - "diagrams-lib_1_4_5_3" = callPackage + "diagrams-lib_1_4_6" = callPackage ({ mkDerivation, active, adjunctions, array, base, bytestring , cereal, colour, containers, criterion, data-default-class , deepseq, diagrams-core, diagrams-solve, directory, distributive - , dual-tree, exceptions, filepath, fingertree, fsnotify, hashable - , intervals, JuicyPixels, lens, linear, monoid-extras, mtl - , numeric-extras, optparse-applicative, process, profunctors + , dual-tree, exceptions, fail, filepath, fingertree, fsnotify + , hashable, intervals, JuicyPixels, lens, linear, monoid-extras + , mtl, numeric-extras, optparse-applicative, process, profunctors , QuickCheck, semigroups, tagged, tasty, tasty-hunit , tasty-quickcheck, text, transformers, unordered-containers }: mkDerivation { pname = "diagrams-lib"; - version = "1.4.5.3"; - sha256 = "0h762gc9l4gsbx3r035mkfrwqblwshjaxk943bq277rw9d5vi7ic"; - revision = "3"; - editedCabalFile = "10m1nh6swfh4jvky2mx692g0jp1xk1cym9gvzljmmni3pf41mzsf"; + version = "1.4.6"; + sha256 = "1a0wl8lspwkby5x45j1wa1xq27bs67x5vwj8jzavym56a3f2pjcb"; + revision = "1"; + editedCabalFile = "1ph3rcxlanyahgszsw0zqqx799i9samw7pyrard24rxs0xp3981n"; libraryHaskellDepends = [ active adjunctions array base bytestring cereal colour containers data-default-class diagrams-core diagrams-solve directory - distributive dual-tree exceptions filepath fingertree fsnotify + distributive dual-tree exceptions fail filepath fingertree fsnotify hashable intervals JuicyPixels lens linear monoid-extras mtl optparse-applicative process profunctors semigroups tagged text transformers unordered-containers @@ -82167,6 +82371,27 @@ self: { license = lib.licenses.bsd3; }) {}; + "diagrams-rasterific_1_4_2_3" = callPackage + ({ mkDerivation, base, bytestring, containers, data-default-class + , diagrams-core, diagrams-lib, file-embed, filepath, FontyFruity + , hashable, JuicyPixels, lens, mtl, optparse-applicative + , Rasterific + }: + mkDerivation { + pname = "diagrams-rasterific"; + version = "1.4.2.3"; + sha256 = "0n46scybjs8mnhrnh5z3nkrah6f8v1rv4cca8k8mqzsf8ss30q5l"; + libraryHaskellDepends = [ + base bytestring containers data-default-class diagrams-core + diagrams-lib file-embed filepath FontyFruity hashable JuicyPixels + lens mtl optparse-applicative Rasterific + ]; + testHaskellDepends = [ base diagrams-core diagrams-lib ]; + description = "Rasterific backend for diagrams"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "diagrams-reflex" = callPackage ({ mkDerivation, base, colour, containers, diagrams-core , diagrams-lib, lens, monoid-extras, mtl, reflex, reflex-dom @@ -83214,8 +83439,8 @@ self: { }: mkDerivation { pname = "diohsc"; - version = "0.1.12"; - sha256 = "0zffy3m5w9cbf2ngg8zhvpz9cgdml6r7swvkf5k8grph1zifa0sj"; + version = "0.1.13"; + sha256 = "0fiahbzidrwqn0hfpp6v7ja98rcd5wyxk7f2vnybhg19k50k3zri"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -83640,7 +83865,7 @@ self: { ]; description = "Easily stream directory contents in constant memory"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "dirtree" = callPackage @@ -83776,10 +84001,8 @@ self: { }: mkDerivation { pname = "discord-haskell"; - version = "1.15.3"; - sha256 = "1lgw0p7lzjz3mj49i45h4s0h5skjhjn3wmv79gv4wz9sxn9gp7bi"; - revision = "1"; - editedCabalFile = "0ajrdam5xdkkij8qm9qxlb5hl82qzmrlib3sxicdifn8kzxqvkdb"; + version = "1.15.4"; + sha256 = "10bnfljxgb9d3lwxp0mcqr5r2fbvspb7jy7ndh16yd5qs988b9hb"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -86166,8 +86389,8 @@ self: { pname = "doctest-extract"; version = "0.1"; sha256 = "1ncrq67d6zcqw5al5m2g7q6ys8rxhsq8rrzbj1dlsyl4q63vyrms"; - revision = "3"; - editedCabalFile = "1gmydr5gabjp7vnf8knxr8d97cx1wm85n2dmxj7529l05qhia9j6"; + revision = "4"; + editedCabalFile = "021s7c8zj5b2ssva02ssnhcrn7avrshidj29zdpccipr4xy1vd0v"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -87437,26 +87660,26 @@ self: { "dprox" = callPackage ({ mkDerivation, attoparsec, base, bytestring, bytestring-trie - , containers, dns, hashable, hspec, iproute, network - , optparse-applicative, psqueues, streaming-commons, time, unix + , containers, dns, fast-logger, hashable, hspec, iproute, network + , optparse-applicative, psqueues, streaming-commons, time }: mkDerivation { pname = "dprox"; - version = "0.3.0"; - sha256 = "1my3v3g7jb8akc41hxx557kamsqhry3q8g76rhsf9h8fhsm31gv1"; + version = "0.4.1"; + sha256 = "1gqx18pfq749hzgq5q7c146cfkdw688l2398pxm59wz65g19bvl4"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ - attoparsec base bytestring bytestring-trie containers dns hashable - iproute network optparse-applicative psqueues streaming-commons - time unix + attoparsec base bytestring bytestring-trie containers dns + fast-logger hashable iproute network optparse-applicative psqueues + streaming-commons time ]; testHaskellDepends = [ - attoparsec base bytestring bytestring-trie containers dns hashable - hspec iproute network optparse-applicative psqueues - streaming-commons time unix + attoparsec base bytestring bytestring-trie containers dns + fast-logger hashable hspec iproute network optparse-applicative + psqueues streaming-commons time ]; - description = "a lightweight DNS proxy server"; + description = "a lightweight DNS proxy server, compatible with dnsmasq-china-list"; license = lib.licenses.bsd3; mainProgram = "dprox"; }) {}; @@ -89071,8 +89294,8 @@ self: { }: mkDerivation { pname = "dyre"; - version = "0.9.1"; - sha256 = "1lrpjvah57p1ld3spcrgqds3claqkd5a9ay8inihl9wws0ifhfmh"; + version = "0.9.2"; + sha256 = "170gx5a0xs4zifbpml3c9rxw7jyidlcmbfl67fk5lpkjfmad23i4"; libraryHaskellDepends = [ base binary directory executable-path filepath io-storage process time unix xdg-basedir @@ -93885,7 +94108,7 @@ self: { ]; description = "Simplified error-handling"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "errors-ext" = callPackage @@ -97319,8 +97542,8 @@ self: { }: mkDerivation { pname = "extism"; - version = "0.2.0"; - sha256 = "0shrf55pqfxv201dl7b97f6z724splbly933zysxqd03lfwmp6r7"; + version = "0.3.0"; + sha256 = "1yb7s7ryaph8qpnbmkrx3xlhc6anli8d1gifmjmh1k67zq0isiyc"; libraryHaskellDepends = [ base bytestring extism-manifest json ]; librarySystemDepends = [ extism ]; testHaskellDepends = [ base bytestring HUnit ]; @@ -98155,8 +98378,8 @@ self: { }: mkDerivation { pname = "fast-downward"; - version = "0.2.2.0"; - sha256 = "0j2ss4cibzipjw7p0jmw04ch8zq7q87fhksfyh5ddqiaf4l6ysi6"; + version = "0.2.3.0"; + sha256 = "0mzp7ggn43q24zbq8zb2ycabr40wjpm41r68s12midvswakda4s3"; libraryHaskellDepends = [ base containers mtl process temporary text transformers ]; @@ -98817,8 +99040,8 @@ self: { }: mkDerivation { pname = "fbrnch"; - version = "1.3.1"; - sha256 = "0rg9mlk999rch4a6v48bb8yvdmkfqmnh9q70j7jn6bnwl0hl0v0w"; + version = "1.3.2"; + sha256 = "0qzfn271ka46f11hrbzq8axc3npkx1n5y5pihpg1gdccqmw6aazq"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -99310,8 +99533,8 @@ self: { }: mkDerivation { pname = "fedora-repoquery"; - version = "0.1.0"; - sha256 = "1cd62igqrw9dhr0dm32f9yv618sx0h1m22b5x86214j9a2r8x2yh"; + version = "0.2"; + sha256 = "1vbjwz98bmax8l535ip2n2500y431n87rf0p5gx8bff7qv68l3j6"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -103507,7 +103730,7 @@ self: { benchmarkHaskellDepends = [ base criterion ]; description = "Composable, streaming, and efficient left folds"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "foldl-exceptions" = callPackage @@ -104810,6 +105033,8 @@ self: { pname = "fourmolu"; version = "0.12.0.0"; sha256 = "0689w4h3y9qr8sxzphklns59jk31ld8y6dzk424xav5zaharmjjp"; + revision = "2"; + editedCabalFile = "0xwfsxn8n7bz47yivab2yjvmww51b2fmvbwm2wbrni11c8fh89z3"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -105250,7 +105475,7 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; - "freckle-app_1_9_0_1" = callPackage + "freckle-app_1_9_0_2" = callPackage ({ mkDerivation, aeson, aws-xray-client-persistent , aws-xray-client-wai, base, Blammo, bugsnag, bytestring , case-insensitive, cassava, conduit, conduit-extra, containers @@ -105268,8 +105493,8 @@ self: { }: mkDerivation { pname = "freckle-app"; - version = "1.9.0.1"; - sha256 = "0bxg7y2hm7yd08v4pnrjzn2dkzaw73z2k061hypds9b7m86hljhi"; + version = "1.9.0.2"; + sha256 = "13hsccdflfpwkjbr6420s6c9pzp2irszj1gah6n54kiirsfw44h0"; libraryHaskellDepends = [ aeson aws-xray-client-persistent aws-xray-client-wai base Blammo bugsnag bytestring case-insensitive cassava conduit conduit-extra @@ -106093,10 +106318,8 @@ self: { }: mkDerivation { pname = "friday"; - version = "0.2.3.1"; - sha256 = "04wn36249b7mddhp6r8zycdxixm0ryj3jrc6qjjvl5k138n4j9q8"; - revision = "2"; - editedCabalFile = "1iy2ywz42mwwr2iy7fzfdif8f0vbyl3w9hgy4rkynsmmqc8mmxba"; + version = "0.2.3.2"; + sha256 = "1jvr04bkjn11awhc79l4j54b1hsw3fnadvvp424s5l2rkyxshyhi"; libraryHaskellDepends = [ base containers convertible deepseq primitive ratio-int transformers vector @@ -107342,19 +107565,17 @@ self: { "fungll-combinators" = callPackage ({ mkDerivation, array, base, containers, gll, pretty - , regex-applicative, text, time, TypeCompose + , regex-applicative, text, time }: mkDerivation { pname = "fungll-combinators"; - version = "0.1.0.1"; - sha256 = "111cjr8jznm3jrf70jr89jhy36yhvikzdgv2vybqj43b1l2g8v4q"; + version = "0.4.1.1"; + sha256 = "1kvklj7ij957lzs6dswz0m53jk37gqh3hicdl9hfwzjqj3652gcr"; libraryHaskellDepends = [ array base containers gll pretty regex-applicative text time - TypeCompose ]; description = "GLL parser with simple combinator interface"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "funion" = callPackage @@ -107943,8 +108164,8 @@ self: { }: mkDerivation { pname = "fuzzyfind"; - version = "3.0.0"; - sha256 = "0vkjqgsa0qv8sz4bwwi49zf17fl23vckwvmr1agsd20rbhw4ivyr"; + version = "3.0.1"; + sha256 = "191qbviavkhzaxwnansis4lsixyc0g4q196myjn72h1cmq5c68v0"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base containers massiv text ]; @@ -112343,7 +112564,7 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; - "ghc-lib_9_6_1_20230312" = callPackage + "ghc-lib_9_6_2_20230523" = callPackage ({ mkDerivation, alex, array, base, binary, bytestring, containers , deepseq, directory, exceptions, filepath, ghc-lib-parser , ghc-prim, happy, hpc, parsec, pretty, process, rts, stm, time @@ -112351,8 +112572,8 @@ self: { }: mkDerivation { pname = "ghc-lib"; - version = "9.6.1.20230312"; - sha256 = "1g31mjshz4nh552sawffpfjd550qv58s7hy1xw7ylaqhp7dylqgv"; + version = "9.6.2.20230523"; + sha256 = "0wlmljbalbfm2y9i2c5ygnsks4gbfzw6ap725bffjcpwd8ma8cq4"; enableSeparateDataOutput = true; libraryHaskellDepends = [ array base binary bytestring containers deepseq directory @@ -112426,15 +112647,15 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; - "ghc-lib-parser_9_6_1_20230312" = callPackage + "ghc-lib-parser_9_6_2_20230523" = callPackage ({ mkDerivation, alex, array, base, binary, bytestring, containers , deepseq, directory, exceptions, filepath, ghc-prim, happy, parsec , pretty, process, time, transformers, unix }: mkDerivation { pname = "ghc-lib-parser"; - version = "9.6.1.20230312"; - sha256 = "0a2zfsjbw5gip7gp09r41vxgfvssyga9hfrrrv2s58fvscx1k7bh"; + version = "9.6.2.20230523"; + sha256 = "104q0lw7maz1ma67invxz6aw9pn99j3f9l15nl3387pgxb666gjq"; enableSeparateDataOutput = true; libraryHaskellDepends = [ array base binary bytestring containers deepseq directory @@ -113033,15 +113254,13 @@ self: { license = lib.licenses.bsd3; }) {}; - "ghc-syntax-highlighter_0_0_9_0" = callPackage + "ghc-syntax-highlighter_0_0_10_0" = callPackage ({ mkDerivation, base, ghc-lib-parser, hspec, hspec-discover, text }: mkDerivation { pname = "ghc-syntax-highlighter"; - version = "0.0.9.0"; - sha256 = "0dan000fg9ipfh8knhrdscnr8lvcf6p2djl9b4bgqd4nc65pcf8a"; - revision = "1"; - editedCabalFile = "0gakc31agipz6090v2masl1vd8d9ra0j8a06qjwchx4k15pds6xa"; + version = "0.0.10.0"; + sha256 = "145xjyraqd62k5amyqi9028rr9v2lgz3irmgz5v2hppza1i5qy72"; enableSeparateDataOutput = true; libraryHaskellDepends = [ base ghc-lib-parser text ]; testHaskellDepends = [ base hspec text ]; @@ -113212,8 +113431,8 @@ self: { ({ mkDerivation, base, bytestring, tasty-bench, text }: mkDerivation { pname = "ghc-trace-events"; - version = "0.1.2.6"; - sha256 = "1yc4ryjmg72znml92wlllxzgvh7z48id6jdyxcfq8fbal5wx6pc3"; + version = "0.1.2.7"; + sha256 = "1gqk6dddj3ajrwg1331ynp8yq44zdg40bx917s550hm9ycfnanji"; libraryHaskellDepends = [ base bytestring text ]; benchmarkHaskellDepends = [ base bytestring tasty-bench ]; description = "Faster traceEvent and traceMarker, and binary object logging for eventlog"; @@ -113370,8 +113589,8 @@ self: { ({ mkDerivation, base, directory, ghc, time }: mkDerivation { pname = "ghcflags"; - version = "1.0.3"; - sha256 = "1xsfznfypgmv67qdxm8zvl8n84hj47akjn9fsdi66b8flbx8c0gm"; + version = "1.0.4"; + sha256 = "10iqsvf1f0xqmzyi7xrs14q9zfkyd5snri2acl7nn4h349ynss18"; libraryHaskellDepends = [ base directory ghc time ]; description = "Dump the ghc flags during compilation"; license = lib.licenses.bsd2; @@ -113629,8 +113848,8 @@ self: { }: mkDerivation { pname = "ghcide"; - version = "1.10.0.0"; - sha256 = "0c2p1qv0hw5744az33ikhzbxzjnxk4migrr5my7i5yphzhywnqk6"; + version = "2.0.0.0"; + sha256 = "0dxd0p6bb982a5x1nf23ds7i46k79c3jy861rb4cmbfni19vqyla"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -113674,8 +113893,8 @@ self: { }: mkDerivation { pname = "ghcide-bench"; - version = "0.1.1"; - sha256 = "1ypb1wpy19an37aq457579y6jq6cic9anq53y5f6gdf09whlcv12"; + version = "2.0.0.0"; + sha256 = "1f5bry8j8af3gd8hndsys7i4z40d202mn1zs4h2rsr2aky8rgb2c"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -115670,8 +115889,8 @@ self: { }: mkDerivation { pname = "gio"; - version = "0.13.8.2"; - sha256 = "1fh0h786h36sm8bd2v72xqqp6paw4qm5inhf86gmd993hm4avxdk"; + version = "0.13.10.0"; + sha256 = "0lwayry5f3jfz7ryabhdf6vb20qwmx48mzfnlmv70zd3fxz4jcd8"; enableSeparateDataOutput = true; setupHaskellDepends = [ base Cabal gtk2hs-buildtools ]; libraryHaskellDepends = [ @@ -116472,30 +116691,6 @@ self: { }: mkDerivation { pname = "github-release"; - version = "2.0.0.5"; - sha256 = "1pd0b048n6vrq9fjgcrafw2y1jab58ac0ff0bcdhaicis12fn6p5"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base burrito bytestring http-client http-client-tls - http-types mime-types optparse-generic text unordered-containers - ]; - executableHaskellDepends = [ - aeson base burrito bytestring http-client http-client-tls - http-types mime-types optparse-generic text unordered-containers - ]; - description = "Upload files to GitHub releases"; - license = lib.licenses.mit; - mainProgram = "github-release"; - }) {}; - - "github-release_2_0_0_6" = callPackage - ({ mkDerivation, aeson, base, burrito, bytestring, http-client - , http-client-tls, http-types, mime-types, optparse-generic, text - , unordered-containers - }: - mkDerivation { - pname = "github-release"; version = "2.0.0.6"; sha256 = "0ydsms0gwz9m7645p9jw7xcn9ri7pzjjwfm10lpwmazjd71hvz4s"; isLibrary = true; @@ -116510,7 +116705,6 @@ self: { ]; description = "Upload files to GitHub releases"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "github-release"; }) {}; @@ -117096,6 +117290,7 @@ self: { librarySystemDepends = [ libGL ]; description = "Complete OpenGL raw bindings"; license = lib.licenses.bsd3; + badPlatforms = lib.platforms.darwin; }) {inherit (pkgs) libGL;}; "gl-capture" = callPackage @@ -117378,8 +117573,8 @@ self: { }: mkDerivation { pname = "glib"; - version = "0.13.8.2"; - sha256 = "09qamkxkpx2paazbh8x225wvwgzgpp0g0a3s708n96q76b4bvd46"; + version = "0.13.10.0"; + sha256 = "149y33ddv8vkvak0042ismiwh6lgc706n3n3bvnmrgw67fmi57m1"; setupHaskellDepends = [ base Cabal gtk2hs-buildtools ]; libraryHaskellDepends = [ base bytestring containers text utf8-string @@ -117473,8 +117668,8 @@ self: { }: mkDerivation { pname = "gll"; - version = "0.4.1.0"; - sha256 = "00gdgyglm4vif41sbi5wx8r69bnvp8ap5wfi4ahxz51ykhmwl2ka"; + version = "0.4.1.1"; + sha256 = "061ypdd5y2ksa4kmij8b1xasr30rsqa97w18n0j142817ravhxi7"; libraryHaskellDepends = [ array base containers pretty regex-applicative text time ]; @@ -120783,6 +120978,8 @@ self: { pname = "goldplate"; version = "0.2.1.1"; sha256 = "1cisak5ng6v0iq24djyg4jp87diay02m0k2saac49saxmk29jsr6"; + revision = "1"; + editedCabalFile = "1sw4rvcfkq56dq5pmd4qh5r9nsz5f0kcsszwn4y2wdbpjplpqm0i"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -122494,8 +122691,8 @@ self: { pname = "graphql-client"; version = "1.2.1"; sha256 = "02wrwb5vgj4px6m178wmfzzy1d2h6018wj106n0j4lzbxyh107iy"; - revision = "1"; - editedCabalFile = "0483nnw03ddv94w02ffr93p5h4aabyv738fbf4qp1v0lrzd54v5k"; + revision = "2"; + editedCabalFile = "0mmknz40l40jb4xnz8z3bzzl3aq243zpiqkyz9kfsmhq6hwzkidb"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -123994,8 +124191,8 @@ self: { }: mkDerivation { pname = "gtk"; - version = "0.15.7"; - sha256 = "063gfqpz8l4g2d1dy2iabdh2z350z82krgav9rypwi1vws92z9pn"; + version = "0.15.8"; + sha256 = "0yk1qqpf4j9j01fcrp7dnixi37l87rjdmmjk6nxsnb1i9zlhd3gn"; enableSeparateDataOutput = true; setupHaskellDepends = [ base Cabal gtk2hs-buildtools ]; libraryHaskellDepends = [ @@ -124185,8 +124382,8 @@ self: { }: mkDerivation { pname = "gtk2hs-buildtools"; - version = "0.13.8.3"; - sha256 = "0fcm0v32hm9j908nyziia16ahb181y9hqppsy18clx2prvj480rv"; + version = "0.13.10.0"; + sha256 = "0ww53n596h39smwf1k0wfk5k0s56n8mkapa8b0q9v9d9bpllgfyw"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -124340,8 +124537,8 @@ self: { }: mkDerivation { pname = "gtk3"; - version = "0.15.7"; - sha256 = "0f8gpmm52hzy8zszy2qdd3a30ssr6zdv4r09vqdkq8p5yrc419j4"; + version = "0.15.8"; + sha256 = "01zl2w239djimhpzvrjv2kc142mnvc1qd9p2q2b9v8z6ddddi7fm"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -124604,15 +124801,19 @@ self: { }) {}; "gvti" = callPackage - ({ mkDerivation, base, directory, mmsyn3, process }: + ({ mkDerivation, base, cli-arguments, directory, mmsyn3, process }: mkDerivation { pname = "gvti"; - version = "0.3.1.0"; - sha256 = "0a6ck1lqzlv2sf0ywinm63v357h6lakzsj5lcwba13l649zacg52"; + version = "0.4.1.0"; + sha256 = "0jfry5yp9rzhgmrnz7wvx7ir56hsi4gld02cdkhfm1320rxd98i7"; isLibrary = true; isExecutable = true; - libraryHaskellDepends = [ base directory mmsyn3 process ]; - executableHaskellDepends = [ base directory mmsyn3 process ]; + libraryHaskellDepends = [ + base cli-arguments directory mmsyn3 process + ]; + executableHaskellDepends = [ + base cli-arguments directory mmsyn3 process + ]; description = "GraphViz Tabular Interface"; license = lib.licenses.mit; mainProgram = "gvti"; @@ -124741,6 +124942,7 @@ self: { ]; description = "Raylib bindings for Haskell"; license = lib.licenses.asl20; + badPlatforms = lib.platforms.darwin; }) {c = null; inherit (pkgs) libGL; inherit (pkgs.xorg) libX11; inherit (pkgs.xorg) libXcursor; inherit (pkgs.xorg) libXext; inherit (pkgs.xorg) libXi; inherit (pkgs.xorg) libXinerama; @@ -125871,6 +126073,8 @@ self: { pname = "hackage-cli"; version = "0.1.0.1"; sha256 = "023gnhdxwn36k3pd74j5jcykqbrj7nvp131mg761h8913h9ldw1r"; + revision = "1"; + editedCabalFile = "02cipwmyj1vwmy21ldsf6ix5qi73vk6mzx9db88rs29ys090b2cw"; isLibrary = false; isExecutable = true; libraryHaskellDepends = [ @@ -127733,8 +127937,8 @@ self: { }: mkDerivation { pname = "half-space"; - version = "0.1.0.0"; - sha256 = "0pijcyxqsrzdp1jjcvi3xbrg878bp954j7n1i1y059riz9a7nyk6"; + version = "0.1.1.0"; + sha256 = "1wcnlbag6jr3fzb867izwsz1bdp94b3nv0xjg0kbs7kkpakk0l7d"; libraryHaskellDepends = [ base call-stack equational-reasoning manifolds-core vector-space ]; @@ -127769,6 +127973,33 @@ self: { broken = true; }) {}; + "halide-JuicyPixels" = callPackage + ({ mkDerivation, base, halide-haskell, hspec, JuicyPixels, vector + }: + mkDerivation { + pname = "halide-JuicyPixels"; + version = "0.0.2.1"; + sha256 = "1zmdfw01aqf1ixpx0xpj8aq936gjhq8rp7c11bbbbsrydff440bp"; + libraryHaskellDepends = [ base halide-haskell JuicyPixels vector ]; + testHaskellDepends = [ base halide-haskell hspec JuicyPixels ]; + description = "Integration between Halide and JuicyPixels"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + + "halide-arrayfire" = callPackage + ({ mkDerivation, arrayfire, base, halide-haskell, hspec }: + mkDerivation { + pname = "halide-arrayfire"; + version = "0.0.2.0"; + sha256 = "11dv10n0r0jk91j2vvh4sv59yfsk0v15jknsvngng2bdsmi7fxcm"; + libraryHaskellDepends = [ arrayfire base halide-haskell ]; + testHaskellDepends = [ arrayfire base halide-haskell hspec ]; + description = "Integration between Halide and ArrayFire"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "halide-haskell" = callPackage ({ mkDerivation, base, bytestring, constraints, filepath, Halide , hspec, HUnit, inline-c, inline-c-cpp, primitive, QuickCheck @@ -127776,8 +128007,8 @@ self: { }: mkDerivation { pname = "halide-haskell"; - version = "0.0.1.0"; - sha256 = "0glal3f23bvvpilczcvy4wsdcnl23xqavyy0ms8hmqk1nbp5is96"; + version = "0.0.2.0"; + sha256 = "0zhpcqzjpa3l7i1bwvcdmmfcg82qf3a75gidcqpfygs2g4gwjxgm"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -130939,8 +131170,8 @@ self: { }: mkDerivation { pname = "haskell-ci"; - version = "0.16"; - sha256 = "1v534l168z2gaxw79hm1c5liwv744v99dwzvzw4hyl7107b42s7i"; + version = "0.16.3"; + sha256 = "1f1k64w6hdgfns3a1pa09h4064ihfck2pdwr7fn0yqpynd0q6cq3"; isLibrary = false; isExecutable = true; libraryHaskellDepends = [ @@ -131338,6 +131569,29 @@ self: { license = lib.licenses.lgpl21Only; }) {inherit (pkgs) glib; inherit (pkgs) gobject-introspection;}; + "haskell-gi_0_26_5" = callPackage + ({ mkDerivation, ansi-terminal, attoparsec, base, bytestring, Cabal + , cabal-doctest, containers, directory, doctest, filepath, glib + , gobject-introspection, haskell-gi-base, mtl, pretty-show, process + , regex-tdfa, safe, text, transformers, xdg-basedir, xml-conduit + }: + mkDerivation { + pname = "haskell-gi"; + version = "0.26.5"; + sha256 = "1vwg0br0vrvq4blafv9j6l49x07ykg4jv9x0y11sjad7cm6s8k95"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ + ansi-terminal attoparsec base bytestring Cabal containers directory + filepath haskell-gi-base mtl pretty-show process regex-tdfa safe + text transformers xdg-basedir xml-conduit + ]; + libraryPkgconfigDepends = [ glib gobject-introspection ]; + testHaskellDepends = [ base doctest process ]; + description = "Generate Haskell bindings for GObject Introspection capable libraries"; + license = lib.licenses.lgpl21Only; + hydraPlatforms = lib.platforms.none; + }) {inherit (pkgs) glib; inherit (pkgs) gobject-introspection;}; + "haskell-gi-base" = callPackage ({ mkDerivation, base, bytestring, containers, glib, text }: mkDerivation { @@ -131350,6 +131604,19 @@ self: { license = lib.licenses.lgpl21Only; }) {inherit (pkgs) glib;}; + "haskell-gi-base_0_26_4" = callPackage + ({ mkDerivation, base, bytestring, containers, glib, text }: + mkDerivation { + pname = "haskell-gi-base"; + version = "0.26.4"; + sha256 = "1c5i9nwf0ldgjyqm8qir5fs66d5pkyl9ajq77rcxy5bc7r7kbyws"; + libraryHaskellDepends = [ base bytestring containers text ]; + libraryPkgconfigDepends = [ glib ]; + description = "Foundation for libraries generated by haskell-gi"; + license = lib.licenses.lgpl21Only; + hydraPlatforms = lib.platforms.none; + }) {inherit (pkgs) glib;}; + "haskell-gi-overloading" = callPackage ({ mkDerivation }: mkDerivation { @@ -131516,8 +131783,8 @@ self: { }: mkDerivation { pname = "haskell-language-server"; - version = "1.10.0.0"; - sha256 = "1sy7whdy18308lf0xydaizc9i6g3svlf90n5adnxyxq4fx8cjbv5"; + version = "2.0.0.0"; + sha256 = "08jw3wlr9kq8jwd23gh5gnals7rks189aypjxavq898y3wdlkgyh"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -133797,8 +134064,8 @@ self: { }: mkDerivation { pname = "haskoin-store"; - version = "0.65.9"; - sha256 = "16xjvrbpsiakq5j8v85m09cqmmlg1xw2wgap1iak0hbapqh287dv"; + version = "0.65.10"; + sha256 = "15zp67vxr8b593pgp989kfrp9cy8nybyyk8k5inqc42q7by1rz1y"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -134974,8 +135241,8 @@ self: { }: mkDerivation { pname = "hasql-notifications"; - version = "0.2.0.4"; - sha256 = "0r8vmp5pqzsc37ifsri5v3m5nmj5k1pid4yxhqqiyg7vimr5i89n"; + version = "0.2.0.5"; + sha256 = "1vxd896q3br75132swyab8lm7zhlc8c5bggc1ks2m883df4lmsc7"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -135003,14 +135270,14 @@ self: { license = lib.licenses.mit; }) {}; - "hasql-optparse-applicative_0_7" = callPackage + "hasql-optparse-applicative_0_7_1_1" = callPackage ({ mkDerivation, attoparsec, attoparsec-time, base, hasql , hasql-pool, optparse-applicative }: mkDerivation { pname = "hasql-optparse-applicative"; - version = "0.7"; - sha256 = "0kngkykspy20by86psdjf40m4lm7v1bs5f5w1lqn98dmlnvpqxd9"; + version = "0.7.1.1"; + sha256 = "1xm86m1sldjxxhkgg18whgcrgjh7ksczn2aim2l70dgh34ij3073"; libraryHaskellDepends = [ attoparsec attoparsec-time base hasql hasql-pool optparse-applicative @@ -135049,14 +135316,14 @@ self: { license = lib.licenses.mit; }) {}; - "hasql-pool_0_9_0_1" = callPackage + "hasql-pool_0_10" = callPackage ({ mkDerivation, async, base, hasql, hspec, random, rerebase, stm , time }: mkDerivation { pname = "hasql-pool"; - version = "0.9.0.1"; - sha256 = "00p06yjyasdcv9f7wn29c9il08drcym65k0xnh7kzyma871wv7yq"; + version = "0.10"; + sha256 = "15h5ashflq55rk42yc5dh6r3gsrj31a0vfx7px5r08jgffiqmv0i"; libraryHaskellDepends = [ base hasql stm time ]; testHaskellDepends = [ async hasql hspec random rerebase ]; description = "Pool of connections for Hasql"; @@ -135329,16 +135596,17 @@ self: { }) {}; "hasql-transaction-io" = callPackage - ({ mkDerivation, base, bytestring, bytestring-tree-builder, hasql - , mtl, resourcet, safe-exceptions, transformers, unliftio-core + ({ mkDerivation, base, bytestring, bytestring-tree-builder + , exceptions, hasql, mtl, resourcet, safe-exceptions, transformers + , unliftio-core }: mkDerivation { pname = "hasql-transaction-io"; - version = "0.2.0.0"; - sha256 = "1d6dmswc40ywr62fxywv1phsq2fxn6vg7q7247kzacrd0kkgs0ja"; + version = "0.2.2.0"; + sha256 = "1rrcpvkkg4l1lzmrhf4vihp4a56xg28cysdshlvl8anbf1ga3q41"; libraryHaskellDepends = [ - base bytestring bytestring-tree-builder hasql mtl resourcet - safe-exceptions transformers unliftio-core + base bytestring bytestring-tree-builder exceptions hasql mtl + resourcet safe-exceptions transformers unliftio-core ]; description = "Perform IO actions during transactions for Hasql"; license = lib.licenses.mit; @@ -137793,8 +138061,8 @@ self: { }: mkDerivation { pname = "hedgehog-extras"; - version = "0.4.5.1"; - sha256 = "1qqy8g9vjsa50j2nrm17z4f3jhvn1f9d5bxshcm1pz7hdkisy5hh"; + version = "0.4.5.2"; + sha256 = "1kdgjxdf9irk7sd8nlqxzppvppp9q6fcffhwpw3n62rf5rnsb6g3"; libraryHaskellDepends = [ aeson aeson-pretty async base bytestring deepseq Diff directory exceptions filepath hedgehog http-conduit hw-aeson mmorph mtl @@ -139665,6 +139933,8 @@ self: { pname = "hex-text"; version = "0.1.0.8"; sha256 = "06zp9hwvds9fss2206c34q1zv80pklhbxcyrirz1xnwl3ml28fb5"; + revision = "1"; + editedCabalFile = "1w1hwzfhaphdbrnbqwn48v2jh7my280nisn7z98asidq77gi0lsl"; libraryHaskellDepends = [ base base16-bytestring bytestring text ]; testHaskellDepends = [ base base16-bytestring bytestring hspec text @@ -139774,6 +140044,8 @@ self: { pname = "hexpat"; version = "0.20.13"; sha256 = "1l9zfp69r3xaxi2znjwpcrx7xckcqvaahv2c0qgkqq61a7ka1qa6"; + revision = "1"; + editedCabalFile = "1w60afh2iqpfs0pqlp1lrpfkq4kaxvqsar8x4sb87w0pvzsxz5a0"; libraryHaskellDepends = [ base bytestring containers deepseq List text transformers utf8-string @@ -140320,12 +140592,17 @@ self: { }) {}; "hgal" = callPackage - ({ mkDerivation, array, base, containers, mtl }: + ({ mkDerivation, array, base, containers, extra, mtl, old-time + , QuickCheck, random + }: mkDerivation { pname = "hgal"; - version = "2.0.0.2"; - sha256 = "17qw8izy54042g56mp3hdbmqcyk95cdarg58xggniwd85q2l5dpi"; + version = "2.0.0.3"; + sha256 = "0sla6djvppgrir0kc0h3d558kcrxsk85xi0i7ganragy9vkkr0qx"; libraryHaskellDepends = [ array base containers mtl ]; + testHaskellDepends = [ + array base containers extra mtl old-time QuickCheck random + ]; description = "library for computation automorphism group and canonical labelling of a graph"; license = "GPL"; }) {}; @@ -140601,8 +140878,8 @@ self: { pname = "hgis"; version = "1.0.0.3"; sha256 = "00s87mna6lxr1q3275jg7ya17qhksr9bmfg2nw9mgadb05j6h2v8"; - revision = "1"; - editedCabalFile = "1p44ngzglxp8kdj6jlczgfjpms889r3fs7waz69zf50cbqq2am0c"; + revision = "2"; + editedCabalFile = "0ghgz2rbzpmg8gkhzxpsj2dscs95asr37zwajs0f0sfc3px3kqnw"; libraryHaskellDepends = [ ansi-wl-pprint base binary bytestring Chart Chart-cairo Chart-diagrams colour composition-prelude data-binary-ieee754 @@ -141086,10 +141363,8 @@ self: { }: mkDerivation { pname = "hie-compat"; - version = "0.3.1.0"; - sha256 = "0ixk1xf8958ajxb11gxx64sf0w6glb9n171jmdqhzdfffd1abs71"; - revision = "1"; - editedCabalFile = "1dr9cqqmxq6dwsdbmm7q4a26ghsnq66yl49wy54dpyln5xzz4234"; + version = "0.3.1.1"; + sha256 = "0ds79wsygvv9dz8wbjxvmik58q2q9knrwrk7hy30c6qpp7a1c6jv"; libraryHaskellDepends = [ array base bytestring containers directory filepath ghc ghc-boot transformers @@ -141713,43 +141988,43 @@ self: { mainProgram = "hindent"; }) {}; - "hindent_6_0_0" = callPackage + "hindent_6_1_0" = callPackage ({ mkDerivation, base, bytestring, Cabal, containers, criterion , deepseq, Diff, directory, exceptions, filepath, ghc-lib-parser , ghc-lib-parser-ex, hspec, monad-loops, mtl, optparse-applicative - , path, path-io, regex-tdfa, split, syb, text, transformers - , unicode-show, utf8-string, yaml + , path, path-io, regex-tdfa, split, syb, transformers, unicode-show + , utf8-string, yaml }: mkDerivation { pname = "hindent"; - version = "6.0.0"; - sha256 = "17pkbjb4zqnzv3bnw3zwisf9j2m9lw5irq7i12bgwrzpv15fpabz"; + version = "6.1.0"; + sha256 = "03i1wxcqxllm6h55rxfksyrxvy5v21scjqa731jmchfr7xf09prr"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ base bytestring Cabal containers deepseq directory exceptions - filepath ghc-lib-parser ghc-lib-parser-ex monad-loops mtl path - path-io regex-tdfa split syb text transformers unicode-show - utf8-string yaml + filepath ghc-lib-parser ghc-lib-parser-ex monad-loops mtl + optparse-applicative path path-io regex-tdfa split syb transformers + unicode-show utf8-string yaml ]; executableHaskellDepends = [ base bytestring Cabal containers directory exceptions filepath ghc-lib-parser ghc-lib-parser-ex monad-loops mtl - optparse-applicative path path-io regex-tdfa split syb text - transformers unicode-show utf8-string yaml + optparse-applicative path path-io regex-tdfa split syb transformers + unicode-show utf8-string yaml ]; testHaskellDepends = [ base bytestring Cabal containers Diff directory exceptions filepath - ghc-lib-parser ghc-lib-parser-ex hspec monad-loops mtl path path-io - regex-tdfa split syb text transformers unicode-show utf8-string - yaml + ghc-lib-parser ghc-lib-parser-ex hspec monad-loops mtl + optparse-applicative path path-io regex-tdfa split syb transformers + unicode-show utf8-string yaml ]; benchmarkHaskellDepends = [ base bytestring Cabal containers criterion deepseq directory exceptions filepath ghc-lib-parser ghc-lib-parser-ex monad-loops - mtl path path-io regex-tdfa split syb text transformers - unicode-show utf8-string yaml + mtl optparse-applicative path path-io regex-tdfa split syb + transformers unicode-show utf8-string yaml ]; doHaddock = false; description = "Extensible Haskell pretty printer"; @@ -142645,8 +142920,8 @@ self: { }: mkDerivation { pname = "hix"; - version = "0.5.2"; - sha256 = "1vr4mbpkshd19ypn6xj788z2znfaqvkqg5ak7ziix955j6wsackl"; + version = "0.5.3"; + sha256 = "02dmsmn3ijf4z6105xralcim3my9as9hxk43kwx92z20n7lma0yj"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -143019,6 +143294,28 @@ self: { mainProgram = "hkgr"; }) {}; + "hkgr_0_4_3" = callPackage + ({ mkDerivation, base, bytestring, directory, extra, filepath + , simple-cabal, simple-cmd-args, simple-prompt, typed-process + , xdg-basedir + }: + mkDerivation { + pname = "hkgr"; + version = "0.4.3"; + sha256 = "0w9409hqjh8cl540dp60a0n2ci97qvq3iygvz9ys5v5j1jpj78rn"; + isLibrary = false; + isExecutable = true; + enableSeparateDataOutput = true; + executableHaskellDepends = [ + base bytestring directory extra filepath simple-cabal + simple-cmd-args simple-prompt typed-process xdg-basedir + ]; + description = "Simple Hackage release workflow for package maintainers"; + license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + mainProgram = "hkgr"; + }) {}; + "hkt" = callPackage ({ mkDerivation, base, hspec, inspection-testing, protolude, text }: @@ -143953,8 +144250,8 @@ self: { pname = "hlrdb-core"; version = "0.2.0.0"; sha256 = "0hkjll4v4kxc133b19kk9k4dkrbag6qdw24gwrhikrxlk666jsbl"; - revision = "2"; - editedCabalFile = "1ql8dg9axrwrlz8wnxx7zkw8i5761qqlhkiy5frc3p5nqvxmf18b"; + revision = "3"; + editedCabalFile = "169a7j9n3sgya96xkklcrbqv08prh41r024dgzr6q0a1wn5j7f04"; libraryHaskellDepends = [ base bytestring hashable hedis lens mtl profunctors random time unordered-containers @@ -143984,8 +144281,8 @@ self: { }: mkDerivation { pname = "hls-alternate-number-format-plugin"; - version = "1.3.0.1"; - sha256 = "0m2i1ypd7cz13fz6vw2baxslq4khhmn0h7213q4qf9i27q5phr7x"; + version = "2.0.0.0"; + sha256 = "12di8zpzrmlhj6i14zhjj7y79gihc3whm30qvlikfy52dkblhx4g"; libraryHaskellDepends = [ aeson base containers extra ghc-boot-th ghcide hie-compat hls-graph hls-plugin-api lens lsp mtl regex-tdfa syb text @@ -144017,10 +144314,8 @@ self: { }: mkDerivation { pname = "hls-cabal-fmt-plugin"; - version = "0.1.0.0"; - sha256 = "1zny0rv6f5km6hwpwq1n9c6chm3ny74d67spyqcmmlrxpqpfc6mp"; - revision = "1"; - editedCabalFile = "09qrgw7zrzvc6hil1q761dpds4ng0pmwm571pmm0dgv7mblp6lpy"; + version = "2.0.0.0"; + sha256 = "0j2c22whp9d7wvwfb20f0ij2nz443vziz9m27y3di45yjwacdj46"; libraryHaskellDepends = [ base directory filepath ghcide hls-plugin-api lens lsp-types process text transformers @@ -144038,10 +144333,8 @@ self: { }: mkDerivation { pname = "hls-cabal-plugin"; - version = "0.1.0.0"; - sha256 = "0f4vag33gl25dfv4gxxi7ldfaaaczv96pwmasmv0imkhnqzgprd5"; - revision = "1"; - editedCabalFile = "11jx04gsbsksw0ja9yyvscyp4if7chmw4p00dy6d4a28b3p00ji7"; + version = "2.0.0.0"; + sha256 = "1cmnyjx8mfhj8q0srvnx0wf4pc1gin1cshnvfqcwikyimpsjivsm"; libraryHaskellDepends = [ base bytestring Cabal deepseq directory extra ghcide hashable hls-graph hls-plugin-api lsp lsp-types regex-tdfa stm text @@ -144062,10 +144355,8 @@ self: { }: mkDerivation { pname = "hls-call-hierarchy-plugin"; - version = "1.2.0.0"; - sha256 = "0x5568l5n8dr7vnk12msczcabpg5ffqbqs50rg5gfj1w6n673y41"; - revision = "1"; - editedCabalFile = "0achd5qpbl7rk07dhwz8b6dhbss2x96g3q82m0b36fagibmwpkix"; + version = "2.0.0.0"; + sha256 = "1sshrk144ndp8dr1kfg9sy3riyx1malhpdj9afnz8nmibg0gicxs"; libraryHaskellDepends = [ aeson base containers extra ghcide hiedb hls-plugin-api lens lsp sqlite-simple text unordered-containers @@ -144085,8 +144376,8 @@ self: { }: mkDerivation { pname = "hls-change-type-signature-plugin"; - version = "1.1.0.1"; - sha256 = "0i8yngk3gdyngd0da37a4d86bnzks8g8331lacncwbl5m3c2dxmg"; + version = "2.0.0.0"; + sha256 = "0ccprd27vr2rj18rgad0855h8w1krf0rwlm1bxsdx85ilcgym4q3"; libraryHaskellDepends = [ base ghcide hls-plugin-api lsp-types regex-tdfa syb text transformers unordered-containers @@ -144106,8 +144397,8 @@ self: { }: mkDerivation { pname = "hls-class-plugin"; - version = "1.1.1.1"; - sha256 = "1yj008zjxhdbcrzzibcisgsd2r6fsh58kasrkxha1n530yidk0qq"; + version = "2.0.0.0"; + sha256 = "1hpgq2c9702iixami1kgl1kb00h15p4sl5ajlza69y42wad2s4r0"; libraryHaskellDepends = [ aeson base containers deepseq extra ghc ghc-boot-th ghc-exactprint ghcide hls-graph hls-plugin-api lens lsp text transformers @@ -144128,10 +144419,8 @@ self: { }: mkDerivation { pname = "hls-code-range-plugin"; - version = "1.1.0.0"; - sha256 = "1qziqda7gk46a253qx8z0yd4dxhjmi1dl5k3c6rv3jv7i4qci30r"; - revision = "1"; - editedCabalFile = "1ai1am9nbmknfmpxdjwz9gm901fynbisk8y1w0j0djb9qq2vmshc"; + version = "2.0.0.0"; + sha256 = "1cwb4r1b35c9szcxq9nzy6yqfwg8ssxirpfxkc8vbrmza59wqn29"; libraryHaskellDepends = [ aeson base containers deepseq extra ghcide hashable hls-plugin-api lens lsp mtl semigroupoids text transformers vector @@ -144154,8 +144443,8 @@ self: { }: mkDerivation { pname = "hls-eval-plugin"; - version = "1.5.0.0"; - sha256 = "1rqnszfw0qdn1xw58vblsrrijx15ajk18gwqvwhmxjsfcm7qk0rb"; + version = "2.0.0.0"; + sha256 = "1agjw6mxdin4mpwna1lgzzhscbva32z02v9x3rzqirnf47pfnl2w"; libraryHaskellDepends = [ aeson base containers data-default deepseq Diff directory dlist extra filepath ghc ghc-boot-th ghc-paths ghcide hashable hls-graph @@ -144196,10 +144485,8 @@ self: { }: mkDerivation { pname = "hls-explicit-fixity-plugin"; - version = "1.1.0.0"; - sha256 = "09saakffpncm7p3148m4pz0g1wsrcgmv845ksn58rqvpdkzv0wsw"; - revision = "1"; - editedCabalFile = "0m81m12nm4hbal8z0sk3db31cbn0rbn6cng1n4qcbxkjx849jwil"; + version = "2.0.0.0"; + sha256 = "094bih984f44zxkzli8zn5779g4l3n47p0n60i3ys0p2awpvwnn7"; libraryHaskellDepends = [ base containers deepseq extra ghc ghcide hashable hls-plugin-api lsp text transformers @@ -144216,8 +144503,8 @@ self: { }: mkDerivation { pname = "hls-explicit-imports-plugin"; - version = "1.2.1.0"; - sha256 = "1rr3i7xri9pnhlxykfa46g2bdfcii1h5rb8rh3mk0dy669f4br3y"; + version = "2.0.0.0"; + sha256 = "1lz620w5z3ly3iivg653csa4rdz6f3mln7mh983xkhrrvnf05w7a"; libraryHaskellDepends = [ aeson base containers deepseq ghc ghcide hls-graph hls-plugin-api lsp text unordered-containers @@ -144234,8 +144521,8 @@ self: { }: mkDerivation { pname = "hls-explicit-record-fields-plugin"; - version = "1.0.1.0"; - sha256 = "0gnzyl547lddd2ms3b1cl2haz1rxnx7g5qz94grj7ygh8ynzk04i"; + version = "2.0.0.0"; + sha256 = "0nw35qpd170860dn3lcdxmc47whbhsi8a89m8kka1arzkagp8p5p"; libraryHaskellDepends = [ base containers ghc-boot-th ghcide hls-graph hls-plugin-api lens lsp syb text transformers unordered-containers @@ -144253,10 +144540,8 @@ self: { }: mkDerivation { pname = "hls-floskell-plugin"; - version = "1.0.2.0"; - sha256 = "1lsfqimmpb4s4j8zwwnxlnxnjhclmg589p54c6mhzgwyhk3llw9i"; - revision = "1"; - editedCabalFile = "1jcbj57am5rcmgb943fpbiiwvzm2r1gypa0hm0mr0whxnln3a1sw"; + version = "2.0.0.0"; + sha256 = "13idpjnd10m4y4yr94hyanv7p5s0zjjlhn7pc55xd418gi08ykn7"; libraryHaskellDepends = [ base floskell ghcide hls-plugin-api lsp-types text transformers ]; @@ -144272,10 +144557,8 @@ self: { }: mkDerivation { pname = "hls-fourmolu-plugin"; - version = "1.1.1.0"; - sha256 = "1gxsx1qskjgm0vgqw7cy33mlkczqr7b6whlykppbpnsfxa2il4jg"; - revision = "2"; - editedCabalFile = "1w3d8bc6n8gjpw1n5cg7znklj0l73sfrl4pwwg2diir72jnp34rd"; + version = "2.0.0.0"; + sha256 = "0w1h5d380b6mk9k91047gwnmag92kwsmbing58hfx3cfq3nrdvzs"; libraryHaskellDepends = [ base filepath fourmolu ghc ghc-boot-th ghcide hls-plugin-api lens lsp process-extras text @@ -144297,8 +144580,8 @@ self: { }: mkDerivation { pname = "hls-gadt-plugin"; - version = "1.0.2.0"; - sha256 = "0ifnnyrdwvczrb5ds6d0nk1g4ixb4wy75fvrbpsjmbmais6xgr9h"; + version = "2.0.0.0"; + sha256 = "0ad45yz9x2lcf4b7pwfn4a7mbba2j3svgp4kpkfb46qdv70jcm13"; libraryHaskellDepends = [ aeson base containers extra ghc ghc-boot-th ghc-exactprint ghcide hls-plugin-api hls-refactor-plugin lens lsp mtl text transformers @@ -144320,8 +144603,8 @@ self: { }: mkDerivation { pname = "hls-graph"; - version = "1.9.0.0"; - sha256 = "0k40cjp52ssp6axb60aqh0ipnm477pps5q1d0smbclhrd9w6gp14"; + version = "2.0.0.0"; + sha256 = "0dij91crndh4l98vgjgv5jrms8lvc40qnr5ynmlhb07wpim5j3yh"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson async base bytestring containers deepseq directory exceptions @@ -144342,10 +144625,8 @@ self: { ({ mkDerivation }: mkDerivation { pname = "hls-haddock-comments-plugin"; - version = "1.1.1.0"; - sha256 = "008q2ybk13180vds9ban61j5k80vxrzn2jx7q6d0bd18jsj7xdvn"; - revision = "1"; - editedCabalFile = "1b4p1n0zn58fiixph88ddm6nndqs7vif998gwgmvh39qxpi8nwdy"; + version = "2.0.0.0"; + sha256 = "099xvvbyd9zi8y48q7dg7fk7kj34nn39gdyhkdff7832q6p7892i"; description = "Haddock comments plugin for Haskell Language Server"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; @@ -144356,21 +144637,19 @@ self: { ({ mkDerivation, aeson, apply-refact, base, binary, bytestring , containers, data-default, deepseq, Diff, directory, extra , filepath, ghc-exactprint, ghc-lib-parser, ghc-lib-parser-ex - , ghcide, hashable, hlint, hls-plugin-api, hls-test-utils, hslogger - , lens, lsp, lsp-types, refact, regex-tdfa, stm, temporary, text + , ghcide, hashable, hlint, hls-plugin-api, hls-test-utils, lens + , lsp, lsp-types, refact, regex-tdfa, stm, temporary, text , transformers, unordered-containers }: mkDerivation { pname = "hls-hlint-plugin"; - version = "1.1.2.0"; - sha256 = "17swnq0a9zp8pkgw6iidcpfid4a2pz77cwj7yp6ajn4hwzxvjp3r"; - revision = "1"; - editedCabalFile = "06flq252j3yj72vhscs0ky3b55lr54f7hcn89x2vkh1w1rq9gkcx"; + version = "2.0.0.0"; + sha256 = "19py74k9ff9pidwpvv4qbhl72dv78lh5m1wvfhv4dzmr3mfn8ry6"; libraryHaskellDepends = [ aeson apply-refact base binary bytestring containers data-default deepseq Diff directory extra filepath ghc-exactprint ghc-lib-parser - ghc-lib-parser-ex ghcide hashable hlint hls-plugin-api hslogger - lens lsp refact regex-tdfa stm temporary text transformers + ghc-lib-parser-ex ghcide hashable hlint hls-plugin-api lens lsp + refact regex-tdfa stm temporary text transformers unordered-containers ]; testHaskellDepends = [ @@ -144388,10 +144667,8 @@ self: { }: mkDerivation { pname = "hls-module-name-plugin"; - version = "1.1.1.0"; - sha256 = "06p0grkkwy1zdik2lq84c0qikfggry5iicldi5xs0xs0skj5y6w2"; - revision = "1"; - editedCabalFile = "020zf882fjmrznr0xzj63q48q9ff15xjkzlr5700iaadh81nrbj1"; + version = "2.0.0.0"; + sha256 = "0y9wkc7zw9cw7gm8d4z58sj1q2w3gvzzqb349g2f73hdm28ydwsk"; libraryHaskellDepends = [ aeson base directory filepath ghcide hls-plugin-api lsp text transformers unordered-containers @@ -144408,8 +144685,8 @@ self: { }: mkDerivation { pname = "hls-ormolu-plugin"; - version = "1.0.4.0"; - sha256 = "0by02vicacp4wxq3plzbd32zi8kwkiqwqdz2h9x83ihkyzb0npry"; + version = "2.0.0.0"; + sha256 = "1wv31qjhgpcwf7cvq3phr1dgw1a2spgs7hhg94zinqkwsjjgdswi"; libraryHaskellDepends = [ base filepath ghc ghc-boot-th ghcide hls-plugin-api lens lsp ormolu text @@ -144432,8 +144709,8 @@ self: { }: mkDerivation { pname = "hls-plugin-api"; - version = "1.6.0.0"; - sha256 = "1d5ry2bfa7y76wzwz445h9hpgll1fp6lj2gjq4q5qwcs17y8ph5m"; + version = "2.0.0.0"; + sha256 = "1h0vycqsnh7j0ygiizbkc30n29bmdzch0l045jlsy3306inalq0z"; libraryHaskellDepends = [ aeson base containers data-default dependent-map dependent-sum Diff dlist extra filepath ghc hashable hls-graph hw-fingertree lens @@ -144458,10 +144735,8 @@ self: { }: mkDerivation { pname = "hls-pragmas-plugin"; - version = "1.0.4.0"; - sha256 = "1cv5m04yzbqvd70rkg1bfry67hzfqn94j4vv13sx15z6cna7nid5"; - revision = "1"; - editedCabalFile = "162xiia6gw5hkg9isdw1gbihfb04zz3b8a6m2v190x9xzmd3mwca"; + version = "2.0.0.0"; + sha256 = "0gd58h1y0ky5wy0j959rcrwkjwqsn1mlwc56rp28mhx4wyl4ilrr"; libraryHaskellDepends = [ base containers extra fuzzy ghc ghcide hls-plugin-api lens lsp text transformers unordered-containers @@ -144480,10 +144755,8 @@ self: { }: mkDerivation { pname = "hls-qualify-imported-names-plugin"; - version = "1.0.2.0"; - sha256 = "0b2q39bkl9xgq266lq9gffz393lflg26j4pbqpsrj9pv2lkdkb3f"; - revision = "1"; - editedCabalFile = "0g7yfzlpfdym9yxzbzyq9swbnqmbvawnndr0h3f4m21l1ki4fm9p"; + version = "2.0.0.0"; + sha256 = "1w9a9xgsphhj8slbq9138xlsv1fzn004iigkq8zp4pgf2hdqcbhh"; libraryHaskellDepends = [ aeson base containers deepseq dlist ghc ghcide hls-graph hls-plugin-api lsp text transformers unordered-containers @@ -144504,8 +144777,8 @@ self: { }: mkDerivation { pname = "hls-refactor-plugin"; - version = "1.2.0.0"; - sha256 = "0jgqxbyxk3wmm3ir75pxx3j249via04757w01dhr8cc3bpck2pl0"; + version = "2.0.0.0"; + sha256 = "004j4m6mzb2mb7q7gvdyqc42kn51psx2kx6h6j8nfq917h1njdhf"; libraryHaskellDepends = [ aeson base bytestring containers data-default deepseq dlist extra ghc ghc-boot ghc-exactprint ghcide hls-graph hls-plugin-api lens @@ -144529,8 +144802,8 @@ self: { }: mkDerivation { pname = "hls-refine-imports-plugin"; - version = "1.0.5.0"; - sha256 = "1jfld3m2cbs3swhfmmp9qkhc11gw4s2fhb8wc57bvwq2i0kpvljr"; + version = "2.0.0.0"; + sha256 = "0jsqy005mbk3hqdz90gfs5xa0cm9bhd5py5f0sb8hvpk78wgbr40"; libraryHaskellDepends = [ aeson base containers deepseq ghc ghcide hls-explicit-imports-plugin hls-graph hls-plugin-api lsp text @@ -144543,19 +144816,17 @@ self: { "hls-rename-plugin" = callPackage ({ mkDerivation, aeson, base, containers, extra, filepath, ghc - , ghc-exactprint, ghcide, hashable, hiedb, hls-plugin-api - , hls-refactor-plugin, hls-test-utils, lsp, lsp-types, mod, syb - , text, transformers, unordered-containers + , ghc-exactprint, ghcide, hashable, hie-compat, hiedb + , hls-plugin-api, hls-refactor-plugin, hls-test-utils, lsp + , lsp-types, mod, syb, text, transformers, unordered-containers }: mkDerivation { pname = "hls-rename-plugin"; - version = "1.0.2.0"; - sha256 = "16hzr13k8dafdpsr23wz8kyjjyybdg2v41r10iy5csjggyqp9iq7"; - revision = "2"; - editedCabalFile = "1jw8rz67s9q3z35krc6fwivws0zp5wqb49fa7xjmvh9qkv4kyh8j"; + version = "2.0.0.0"; + sha256 = "11j67d031a2vvsb0crl702467088z0x14gkw425crr544gwjd7x6"; libraryHaskellDepends = [ - base containers extra ghc ghc-exactprint ghcide hashable hiedb - hls-plugin-api hls-refactor-plugin lsp lsp-types mod syb text + base containers extra ghc ghc-exactprint ghcide hashable hie-compat + hiedb hls-plugin-api hls-refactor-plugin lsp lsp-types mod syb text transformers unordered-containers ]; testHaskellDepends = [ @@ -144573,8 +144844,8 @@ self: { }: mkDerivation { pname = "hls-retrie-plugin"; - version = "1.0.4.0"; - sha256 = "1n8j29sd3gplpb91zc6hwsiwl445z5aq2flv5k166apgvn1w9fdc"; + version = "2.0.0.0"; + sha256 = "02mm4zwv99qj0ldhyps4yn3j48xs1njxb3drxpid5kkdvpiv1spx"; libraryHaskellDepends = [ aeson base bytestring containers deepseq directory extra ghc ghcide hashable hls-plugin-api hls-refactor-plugin lsp lsp-types retrie @@ -144621,8 +144892,8 @@ self: { }: mkDerivation { pname = "hls-splice-plugin"; - version = "1.1.0.0"; - sha256 = "1aicxjq6lkkb86ilbj3jgqy2fqm5l6qgdx8yizavnjihfq0b7sh4"; + version = "2.0.0.0"; + sha256 = "0q8yjq2r97p0pnxbcs2wxzhyjqx69zp3vrgbz4q8hmy3d3v05a9x"; libraryHaskellDepends = [ aeson base containers dlist extra foldl ghc ghc-exactprint ghcide hls-plugin-api hls-refactor-plugin lens lsp retrie syb text @@ -144637,8 +144908,8 @@ self: { ({ mkDerivation }: mkDerivation { pname = "hls-stan-plugin"; - version = "1.0.1.0"; - sha256 = "07wvjzi6422c63dwm28xj6ba5zhbxgb2y4fldahy1h8bfrc8vjkx"; + version = "2.0.0.0"; + sha256 = "1qcck8a58bqim5x7vq0mmsak0742xjy7g525mn6c6rbshv3vdxd4"; description = "Stan integration plugin with Haskell Language Server"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; @@ -144652,10 +144923,8 @@ self: { }: mkDerivation { pname = "hls-stylish-haskell-plugin"; - version = "1.0.1.2"; - sha256 = "061bqhy6ldrkvp76w2kvdrgzss0rqyhj1nsnqafrr4rdqc1x8y4c"; - revision = "1"; - editedCabalFile = "0r6dn3ygd3qx584acb92s8axp6jwy5w07i4fgvfv8all2ski2k2n"; + version = "2.0.0.0"; + sha256 = "1441pswwmxh1c7zl7r4jl5ylpkg2v6xvwyvgmziyhgx9jy29j72r"; libraryHaskellDepends = [ base directory filepath ghc ghc-boot-th ghcide hls-plugin-api lsp-types stylish-haskell text @@ -144669,8 +144938,8 @@ self: { ({ mkDerivation }: mkDerivation { pname = "hls-tactics-plugin"; - version = "1.8.0.0"; - sha256 = "06kxgjds3sv2ygqig9wjc7xys97qgfv1cnpn988s6ji6840bral4"; + version = "2.0.0.0"; + sha256 = "0ai0drpakkijamkd5d7smdhv4kwgld9xwvkh2l9avjzljqwragqy"; description = "Wingman plugin for Haskell Language Server"; license = lib.licenses.asl20; hydraPlatforms = lib.platforms.none; @@ -144686,10 +144955,8 @@ self: { }: mkDerivation { pname = "hls-test-utils"; - version = "1.5.0.0"; - sha256 = "032y0xa5b9p4idkn4ac6qn28clf1xmhwqc28gwvnq4hz8h6lxng3"; - revision = "1"; - editedCabalFile = "1rcvr6csvmaadsm271wz8plsid6fxk0c0f7lxn8a7q54mk8fyj6z"; + version = "2.0.0.0"; + sha256 = "1xvfkj9xscf1cx3va6v6vblhsnimvkwkladvdbw5mxabicpwjy2m"; libraryHaskellDepends = [ aeson async base blaze-markup bytestring containers data-default directory extra filepath ghcide hls-graph hls-plugin-api lens lsp @@ -147342,6 +147609,27 @@ self: { mainProgram = "hr"; }) {}; + "horizontal-rule_0_6_0_0" = callPackage + ({ mkDerivation, ansi-wl-pprint, base, HMock, optparse-applicative + , tasty, tasty-hunit, terminal-size, text, time + }: + mkDerivation { + pname = "horizontal-rule"; + version = "0.6.0.0"; + sha256 = "03rh58znaghcf1gicbwbxkx5ya4lv7qi8b2lq5nawi35ljars02x"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base terminal-size text ]; + executableHaskellDepends = [ + ansi-wl-pprint base optparse-applicative text time + ]; + testHaskellDepends = [ base HMock tasty tasty-hunit ]; + description = "horizontal rule for the terminal"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "hr"; + }) {}; + "horname" = callPackage ({ mkDerivation, base, containers, megaparsec, optparse-applicative , text, these, uniplate, wl-pprint-text @@ -148149,10 +148437,10 @@ self: { }: mkDerivation { pname = "hpc-lcov"; - version = "1.1.0"; - sha256 = "009z1i0ddjx7sazybirrpw99675p1fyl84ykg4dyypa7rz81vv3z"; - revision = "2"; - editedCabalFile = "11sbnn7rdfm7l7k3rcw4g4mvzrbgrw1jlyx726v47j3l39n54qsn"; + version = "1.1.1"; + sha256 = "0wwcg3s0vd0mj2pkkrv3vf16x7l39chz14xniqsm6v3yw3sfi4dq"; + revision = "1"; + editedCabalFile = "102ynl0z1w7s98h1ry9sqj5vm298hvxaq6l8hh6pl45rgq40k8jd"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base containers hpc ]; @@ -148459,8 +148747,8 @@ self: { }: mkDerivation { pname = "hpqtypes-extras"; - version = "1.16.4.0"; - sha256 = "131jy0caw220lvlaq99k13mg2cri5mldd30caj1vfck8llfdck60"; + version = "1.16.4.2"; + sha256 = "1j7xyj5rw2j5drrrw64pjv75dbf3sbzs14qqi3kxbvmkhg8jgb5a"; libraryHaskellDepends = [ base base16-bytestring bytestring containers cryptohash exceptions extra hpqtypes log-base mtl text text-show @@ -148538,32 +148826,34 @@ self: { "hprox" = callPackage ({ mkDerivation, async, base, base64-bytestring, binary, bytestring - , case-insensitive, conduit, conduit-extra, dns, http-client - , http-client-tls, http-reverse-proxy, http-types - , optparse-applicative, random, tls, unix, wai, wai-extra, warp - , warp-tls + , case-insensitive, conduit, conduit-extra, dns, fast-logger + , http-client, http-client-tls, http-reverse-proxy, http-types + , http2, optparse-applicative, random, tls, tls-session-manager + , wai, wai-extra, warp, warp-tls }: mkDerivation { pname = "hprox"; - version = "0.4.0"; - sha256 = "0jgq2m3k892qbcalrp8wjijgymn7m5rapdmn0ndsj8r6f0v85avk"; + version = "0.5.2"; + sha256 = "00ms3kvirrnpy6w5ngykfzrv4777n2pw8ppwb76myjrkylj7ygws"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ async base base64-bytestring binary bytestring case-insensitive - conduit conduit-extra dns http-client http-client-tls - http-reverse-proxy http-types optparse-applicative random tls unix - wai wai-extra warp warp-tls + conduit conduit-extra dns fast-logger http-client http-client-tls + http-reverse-proxy http-types http2 optparse-applicative random tls + tls-session-manager wai wai-extra warp warp-tls ]; executableHaskellDepends = [ async base base64-bytestring binary bytestring case-insensitive - conduit conduit-extra dns http-client http-client-tls - http-reverse-proxy http-types optparse-applicative random tls unix - wai wai-extra warp warp-tls + conduit conduit-extra dns fast-logger http-client http-client-tls + http-reverse-proxy http-types http2 optparse-applicative random tls + tls-session-manager wai wai-extra warp warp-tls ]; description = "a lightweight HTTP proxy server, and more"; license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; mainProgram = "hprox"; + broken = true; }) {}; "hps" = callPackage @@ -151728,8 +152018,8 @@ self: { }: mkDerivation { pname = "hsexif"; - version = "0.6.1.9"; - sha256 = "1k6zq1jjzl7y38yh9cris096i5bba24rwwizdr8a2cyqqxz2g8jf"; + version = "0.6.1.10"; + sha256 = "1j9gnd6c3g820915sgcqwx0f829xvi43gzqi5zqj6dqdinbrxgvl"; libraryHaskellDepends = [ base binary bytestring containers iconv text time ]; @@ -151976,8 +152266,8 @@ self: { }: mkDerivation { pname = "hsinspect"; - version = "0.0.18"; - sha256 = "1xqrmkr1r3ssv51aqikxhw39rgajswrvl3z0gb0xq2p3shynxi53"; + version = "0.1.0"; + sha256 = "1w7rhnqmk38hxm0dwmrh3jlkz53rr50ilcc8sk1fq1dmr3kh9j53"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -153236,14 +153526,14 @@ self: { license = lib.licenses.mit; }) {}; - "hspec_2_11_0_1" = callPackage + "hspec_2_11_1" = callPackage ({ mkDerivation, base, hspec-core, hspec-discover , hspec-expectations, QuickCheck }: mkDerivation { pname = "hspec"; - version = "2.11.0.1"; - sha256 = "0sz2ishjz7fa09w2215fdxw2yj6bv1q55arr554l1jdxf6mvd7r7"; + version = "2.11.1"; + sha256 = "0rm2hcnhka0b8z7kdlzsd4lvk5jna29n9qfrfxzvn5a8ncj0mb71"; libraryHaskellDepends = [ base hspec-core hspec-discover hspec-expectations QuickCheck ]; @@ -153265,14 +153555,14 @@ self: { license = lib.licenses.mit; }) {}; - "hspec-api_2_11_0_1" = callPackage + "hspec-api_2_11_1" = callPackage ({ mkDerivation, base, hspec, hspec-core, hspec-discover , transformers }: mkDerivation { pname = "hspec-api"; - version = "2.11.0.1"; - sha256 = "0zrd2kn9qwx5cs9cbn8pz9sm8jr322jnj99lpasskpg8acby3pkk"; + version = "2.11.1"; + sha256 = "0jq8x5rfskb29nh1hpy9y1rc7g6nwbdba8nnri5kdc3jf3jwmnff"; libraryHaskellDepends = [ base hspec-core transformers ]; testHaskellDepends = [ base hspec hspec-core transformers ]; testToolDepends = [ hspec-discover ]; @@ -153397,7 +153687,7 @@ self: { license = lib.licenses.mit; }) {}; - "hspec-core_2_11_0_1" = callPackage + "hspec-core_2_11_1" = callPackage ({ mkDerivation, ansi-terminal, array, base, base-orphans , call-stack, deepseq, directory, filepath, haskell-lexer , hspec-expectations, hspec-meta, HUnit, process, QuickCheck @@ -153406,8 +153696,8 @@ self: { }: mkDerivation { pname = "hspec-core"; - version = "2.11.0.1"; - sha256 = "03fwa0y901khi3gp45qs72f6yzxils1dwkm8hpc2znl0ndaf06hq"; + version = "2.11.1"; + sha256 = "1r8jnhfg6yn4spq5bml4rg47ifkq7xsk6lb1mnikly7l5x91nscl"; libraryHaskellDepends = [ ansi-terminal array base call-stack deepseq directory filepath haskell-lexer hspec-expectations HUnit process QuickCheck @@ -153434,6 +153724,8 @@ self: { pname = "hspec-dirstream"; version = "1.0.0.4"; sha256 = "10axc2rszyqzw8zwz7zjh05m5lifmghflls1w2sbyp7vlyz13iac"; + revision = "1"; + editedCabalFile = "1dzfiw97z0jwl8axha8r6vzpm25x25rz181i7i3i7dm8j8kanm1d"; enableSeparateDataOutput = true; libraryHaskellDepends = [ base dirstream filepath hspec hspec-core pipes pipes-safe @@ -153488,14 +153780,14 @@ self: { maintainers = [ lib.maintainers.maralorn ]; }) {}; - "hspec-discover_2_11_0_1" = callPackage + "hspec-discover_2_11_1" = callPackage ({ mkDerivation, base, directory, filepath, hspec-meta, mockery , QuickCheck }: mkDerivation { pname = "hspec-discover"; - version = "2.11.0.1"; - sha256 = "18acqmw3zgkn718vgjiskx266ids4pp4mamb4gxlhj2934vfl656"; + version = "2.11.1"; + sha256 = "15jcz0dldq9jjzciv7vwnlxw9h7vbglvcgq90zwb50lpj1d9l916"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base directory filepath ]; @@ -153523,6 +153815,19 @@ self: { license = lib.licenses.mit; }) {}; + "hspec-expectations_0_8_3" = callPackage + ({ mkDerivation, base, call-stack, HUnit, nanospec }: + mkDerivation { + pname = "hspec-expectations"; + version = "0.8.3"; + sha256 = "0wi1s0byfrlay98w1w38lj0mi0ifqzhvkl05q5dv5yr1wl50mgvi"; + libraryHaskellDepends = [ base call-stack HUnit ]; + testHaskellDepends = [ base call-stack HUnit nanospec ]; + description = "Catchy combinators for HUnit"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "hspec-expectations-json" = callPackage ({ mkDerivation, aeson, aeson-pretty, aeson-qq, base, Diff, hspec , HUnit, scientific, text, unordered-containers, vector @@ -153656,25 +153961,6 @@ self: { }: mkDerivation { pname = "hspec-golden"; - version = "0.2.0.1"; - sha256 = "09c7bpbvkrdp0fxhr0s1v9gm6hcsqb3fyhix5bckaqhniccdnr5w"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base directory filepath hspec-core ]; - executableHaskellDepends = [ base directory optparse-applicative ]; - testHaskellDepends = [ base directory hspec hspec-core silently ]; - testToolDepends = [ hspec-discover ]; - description = "Golden tests for hspec"; - license = lib.licenses.mit; - mainProgram = "hgold"; - }) {}; - - "hspec-golden_0_2_1_0" = callPackage - ({ mkDerivation, base, directory, filepath, hspec, hspec-core - , hspec-discover, optparse-applicative, silently - }: - mkDerivation { - pname = "hspec-golden"; version = "0.2.1.0"; sha256 = "07bfwj10n75l5zskwx4yzi86xxp5b4f692bjjkqs5b970h6gw33y"; isLibrary = true; @@ -153685,7 +153971,6 @@ self: { testToolDepends = [ hspec-discover ]; description = "Golden tests for hspec"; license = lib.licenses.mit; - hydraPlatforms = lib.platforms.none; mainProgram = "hgold"; }) {}; @@ -157396,6 +157681,35 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "httpstan" = callPackage + ({ mkDerivation, aeson, base, base64-bytestring, bytestring + , case-insensitive, containers, deepseq, exceptions, hspec + , http-api-data, http-client, http-client-tls, http-media + , http-types, iso8601-time, katip, microlens, mtl, network + , QuickCheck, random, safe-exceptions, semigroups, text, time + , transformers, unordered-containers, vector + }: + mkDerivation { + pname = "httpstan"; + version = "0.2.0.0"; + sha256 = "08wpigjaqjdbml7bp4rpikldzv7qkkzbxlmngp9p99zxr75d86vf"; + libraryHaskellDepends = [ + aeson base base64-bytestring bytestring case-insensitive containers + deepseq exceptions http-api-data http-client http-client-tls + http-media http-types iso8601-time katip microlens mtl network + random safe-exceptions text time transformers unordered-containers + vector + ]; + testHaskellDepends = [ + aeson base bytestring containers hspec iso8601-time mtl QuickCheck + semigroups text time transformers unordered-containers vector + ]; + description = "Auto-generated httpstan API Client"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "htune" = callPackage ({ mkDerivation, alsa-pcm, base, carray, fft, gloss }: mkDerivation { @@ -158711,10 +159025,8 @@ self: { }: mkDerivation { pname = "hw-json"; - version = "1.3.2.3"; - sha256 = "1m5q46ywmdymk2xwqbpm0rswmkbdfzscg6gdym61yninz2sjmd7a"; - revision = "2"; - editedCabalFile = "0ys6nrz477zhav1mp59vglkm8dv1b0q1hwswz4l6wya12w11bzlw"; + version = "1.3.2.4"; + sha256 = "13cwkivc5sb2nzr7ifldp65aax0kznr3gj1pskamxnig8h3iqdcl"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -160878,6 +161190,7 @@ self: { testSystemDepends = [ zookeeper_mt ]; description = "Haskell client library for Apache Zookeeper"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {inherit (pkgs) zookeeper_mt;}; "hzulip" = callPackage @@ -162837,6 +163150,8 @@ self: { pname = "implicit-hie-cradle"; version = "0.5.0.1"; sha256 = "1ryahlkw21n4xq01p0xiyrgklqa983gybjwaxqywh0bf8zw26mpf"; + revision = "1"; + editedCabalFile = "170mbhpw724wa9b7i9jl2vwhzhn9143ms3ws2rz7pbkr896l3jfv"; libraryHaskellDepends = [ base directory extra filepath hie-bios implicit-hie process transformers @@ -163441,7 +163756,7 @@ self: { description = "Indexed Types"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; broken = true; }) {}; @@ -163701,6 +164016,26 @@ self: { mainProgram = "indigo"; }) {}; + "inf-backprop" = callPackage + ({ mkDerivation, base, comonad, doctest, isomorphism-class + , monad-logger, numhask, simple-expr, text, transformers + }: + mkDerivation { + pname = "inf-backprop"; + version = "0.1.0.2"; + sha256 = "0qz19lbksjip8j1lm1x9079pdbfhbw4l24v4fahgwmd7zckrf01m"; + libraryHaskellDepends = [ + base comonad isomorphism-class monad-logger numhask simple-expr + text transformers + ]; + testHaskellDepends = [ + base comonad doctest isomorphism-class monad-logger numhask + simple-expr text transformers + ]; + description = "Automatic differentiation and backpropagation"; + license = lib.licenses.bsd3; + }) {}; + "inf-interval" = callPackage ({ mkDerivation, array, base, deepseq, QuickCheck, text, vector }: mkDerivation { @@ -164219,8 +164554,8 @@ self: { }: mkDerivation { pname = "inline-c"; - version = "0.9.1.7"; - sha256 = "0wcwfrg4qcsi9vzp13dpbagjib9yxq5ii1g45zd5a2wlyh16s9sk"; + version = "0.9.1.8"; + sha256 = "1qa1rspwyac0f68g7qll17a0wc2a4qrr9fkfarpymfhm7gxzf947"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -164258,6 +164593,24 @@ self: { maintainers = [ lib.maintainers.roberth ]; }) {}; + "inline-c-objc" = callPackage + ({ mkDerivation, base, containers, hspec, inline-c + , template-haskell + }: + mkDerivation { + pname = "inline-c-objc"; + version = "0.1.0.0"; + sha256 = "1xqmcizpa1is5dg77damxy8v26dmrcc8djf5f21y6zwjiaz27y3f"; + libraryHaskellDepends = [ + base containers inline-c template-haskell + ]; + testHaskellDepends = [ base hspec inline-c ]; + description = "Lets you embed Objective-C code into Haskell"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "inline-c-win32" = callPackage ({ mkDerivation, base, containers, inline-c, template-haskell , Win32 @@ -164311,8 +164664,8 @@ self: { }: mkDerivation { pname = "inline-r"; - version = "1.0.0"; - sha256 = "0b7xsfglhb9mjac79ch07fd426bkdg22nwdg50j3jj906bi65jba"; + version = "1.0.1"; + sha256 = "0wndjyp5y08f8m01rbcxs1dn721dp2wfcfa19k1i443r0f1wc3mf"; libraryHaskellDepends = [ aeson base bytestring containers data-default-class deepseq exceptions heredoc inline-c mtl pretty primitive process reflection @@ -164519,22 +164872,22 @@ self: { , binary, bytestring, case-insensitive, containers, directory , ekg-core, exceptions, hslogger, http-client, http-client-tls , http-types, HUnit, network, process, random, regex-base - , regex-compat, regex-pcre, regex-tdfa, retry, scientific, servant - , servant-server, stm, sysinfo, text, time, transformers, unix - , unordered-containers, vector, wai, warp + , regex-compat, regex-pcre, regex-tdfa, retry, safe, scientific + , servant, servant-server, stm, sysinfo, text, time, transformers + , unix, unordered-containers, vector, wai, warp }: mkDerivation { pname = "instana-haskell-trace-sdk"; - version = "0.10.0.0"; - sha256 = "1cng78w2pk9rprbrwcg5z760v4fbv1swcm7rhmrv6xkvg5vipmh0"; + version = "0.10.2.0"; + sha256 = "1ljf0zkx1863r9a3na7acvj1f4cdjq27bs3m54k91k5l4iqjj3v7"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson aeson-casing aeson-extra base bytestring case-insensitive containers directory ekg-core exceptions hslogger http-client - http-client-tls http-types network process random regex-base - regex-compat regex-pcre regex-tdfa retry scientific stm sysinfo - text time unix unordered-containers vector wai + http-client-tls http-types network random regex-base regex-compat + regex-pcre regex-tdfa retry safe scientific stm sysinfo text time + unix unordered-containers vector wai ]; executableHaskellDepends = [ aeson aeson-casing base binary bytestring case-insensitive @@ -164545,7 +164898,7 @@ self: { aeson aeson-casing aeson-extra array base bytestring case-insensitive containers directory ekg-core exceptions hslogger http-client http-types HUnit process random regex-base regex-compat - regex-pcre regex-tdfa retry scientific text unix + regex-pcre regex-tdfa retry safe scientific text unix unordered-containers vector wai ]; description = "SDK for adding custom Instana tracing support to Haskell applications"; @@ -165485,25 +165838,20 @@ self: { "interval-algebra" = callPackage ({ mkDerivation, base, binary, containers, deepseq, foldl, hspec - , hspec-discover, prettyprinter, QuickCheck, safe, text, time - , witch, witherable + , hspec-discover, prettyprinter, QuickCheck, text, time }: mkDerivation { pname = "interval-algebra"; - version = "2.1.3"; - sha256 = "0dsy32n9s0d9i9479d9rhlwwnjl2grl4xg8jwg4mk91p34s8l05n"; + version = "2.2.0"; + sha256 = "1hzdcrvymr5l4vwg24a1c624qym05kvv864i5ff54d5iwb06m5yj"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base binary containers deepseq foldl prettyprinter QuickCheck safe - text time witch witherable - ]; - executableHaskellDepends = [ - base containers prettyprinter time witch - ]; - testHaskellDepends = [ - base containers hspec QuickCheck safe time witherable + base binary containers deepseq foldl prettyprinter QuickCheck text + time ]; + executableHaskellDepends = [ base containers prettyprinter time ]; + testHaskellDepends = [ base containers hspec QuickCheck time ]; testToolDepends = [ hspec-discover ]; description = "An implementation of Allen's interval algebra for temporal logic"; license = lib.licenses.bsd3; @@ -165530,8 +165878,8 @@ self: { }: mkDerivation { pname = "interval-patterns"; - version = "0.6.0.0"; - sha256 = "0f0gy1442v7di34bngssihhyb6vmhdi71j8yqmii8c7xxvnpr69a"; + version = "0.6.0.1"; + sha256 = "0i4wwch90842dkbrjh5ikclwxgzs9wx9s2v2hgcv9zzqi4z8pn4x"; libraryHaskellDepends = [ base containers groups lattices semirings time time-compat ]; @@ -165603,6 +165951,7 @@ self: { executablePkgconfigDepends = [ ncurses ]; description = "A game of competitive puzzle-design"; license = lib.licenses.gpl3Only; + badPlatforms = lib.platforms.darwin; mainProgram = "intricacy"; }) {inherit (pkgs) ncurses;}; @@ -168234,6 +168583,8 @@ self: { pname = "jacinda"; version = "1.2.0.0"; sha256 = "11xgbxhbhd6j974invscbmc1r41f4synjqhc2499kdknjfvnvnv5"; + revision = "1"; + editedCabalFile = "03rj2ygqman0ynr9ns7w8z42x5xbvqkxgr2x6skldlipqamj9pb2"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -169618,8 +169969,8 @@ self: { pname = "joy-rewrite"; version = "0.2.0"; sha256 = "00p1gnkydlcfkbcbv2dycpafni2v2dg5xp87yvcf304jiyw4xh4r"; - revision = "1"; - editedCabalFile = "09dpapnfyxv65hxqli2k418dxy7758cr21m332c3xxxhy1w1p08m"; + revision = "2"; + editedCabalFile = "1815hwmrk445cb3a14dg4h88hgs3xphhmq794np5avirdp0183zg"; libraryHaskellDepends = [ base containers hspec monad-loops parsec text ]; @@ -171391,20 +171742,19 @@ self: { }) {}; "juicy-gcode" = callPackage - ({ mkDerivation, base, configurator, gitrev, lens, linear, matrix - , optparse-applicative, svg-tree, text + ({ mkDerivation, aeson, base, gitrev, JuicyPixels, lens, linear + , matrix, optparse-applicative, svg-tree, text + , unordered-containers, yaml }: mkDerivation { pname = "juicy-gcode"; - version = "0.3.0.0"; - sha256 = "0j2q76fwx93az2yk0pnmzl82npl0305ks2ia7gbxi7k9jwdzbp0i"; - revision = "1"; - editedCabalFile = "1n7hnbsiag3zzm8qbqz002g7iz074g8fifiq6inzny3y8n8x1fcy"; + version = "1.0.0.0"; + sha256 = "1m8mqszid40fhspm8hk8zhvrx2sp7ikfvvh46z8kfbhpgqbfq1jv"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ - base configurator gitrev lens linear matrix optparse-applicative - svg-tree text + aeson base gitrev JuicyPixels lens linear matrix + optparse-applicative svg-tree text unordered-containers yaml ]; description = "SVG to G-Code converter"; license = lib.licenses.bsd3; @@ -173284,8 +173634,8 @@ self: { }: mkDerivation { pname = "kempe"; - version = "0.2.0.12"; - sha256 = "0ijxc5sc2caxfcdi737q4f6b14xwjpi1f3if3lmwc09mz3y98bs1"; + version = "0.2.0.13"; + sha256 = "0r2kskw5hpl9pkfl4r8c2p5wkzhy922rl8l7fla017iw3h1v6y8s"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -173998,14 +174348,14 @@ self: { license = lib.licenses.bsd3; }) {}; - "kind-generics-th_0_2_3_0" = callPackage + "kind-generics-th_0_2_3_1" = callPackage ({ mkDerivation, base, fcf-family, ghc-prim, kind-generics , template-haskell, th-abstraction }: mkDerivation { pname = "kind-generics-th"; - version = "0.2.3.0"; - sha256 = "12rqqsvfwllq0k5dmgvab61j5n92xx6z6xlcmi4sm5zfxk2pi3b5"; + version = "0.2.3.1"; + sha256 = "1xcpv659176jhsxzqs9642pn192hkbl3qcccabh1ynx3nysivk7m"; libraryHaskellDepends = [ base fcf-family ghc-prim kind-generics template-haskell th-abstraction @@ -174086,8 +174436,8 @@ self: { pname = "kleene"; version = "0.1"; sha256 = "00w1gywdhqyy2k3y238gfjs9h2w4pjanmi45bna5lj215n0jb0hg"; - revision = "6"; - editedCabalFile = "15fkqfhf4pjskbivsvjnrq79667cdxf3jv2yx576vl8fkgx5l1ba"; + revision = "7"; + editedCabalFile = "0pdxv8cjv5zkby152xyxbm1kzvy7bl3f4gni4z3ksd96kijaqixq"; libraryHaskellDepends = [ attoparsec base base-compat bytestring containers lattices MemoTrie QuickCheck range-set-list regex-applicative semigroupoids @@ -176264,6 +176614,8 @@ self: { pname = "language-ats"; version = "1.7.10.3"; sha256 = "0snidchidgzxwizbzaxf1gn547ga6kdf8pi03p6p5g9ffb8mv372"; + revision = "1"; + editedCabalFile = "0v557gfd66ma82gi2m29y7yc9jw2z0syp94sjaqgbqskzv10vs3y"; enableSeparateDataOutput = true; libraryHaskellDepends = [ ansi-wl-pprint array base composition-prelude containers deepseq @@ -177647,24 +177999,21 @@ self: { "lapack" = callPackage ({ mkDerivation, base, blas-ffi, blaze-html, boxes, ChasingBottoms , comfort-array, comfort-array-shape, data-ref, deepseq - , doctest-exitcode-stdio, fixed-length, guarded-allocation, hyper - , lapack-ffi, lazyio, monoid-transformer, netlib-ffi, non-empty - , QuickCheck, quickcheck-transformer, random, semigroups, Stream - , tagged, text, tfp, transformers, unique-logic-tf, utility-ht + , doctest-exitcode-stdio, guarded-allocation, hyper, lapack-ffi + , lazyio, monoid-transformer, netlib-ffi, non-empty, QuickCheck + , quickcheck-transformer, random, semigroups, Stream, tagged, text + , tfp, transformers, unique-logic-tf, utility-ht }: mkDerivation { pname = "lapack"; - version = "0.5.0.2"; - sha256 = "18gb8p2mx9hwhcqnqghvjhrdbxr7sziyr936vn2bnh33w9srnghi"; - revision = "1"; - editedCabalFile = "0z2lp9x1difxi5pddjgmn3dxkw6wp6qjhl0w8d5i6qgzg4r50kl3"; + version = "0.5.0.3"; + sha256 = "0461rzz8qp5vqna7rha3qa89pm7clkmx1vqmkmqb9i50znfr0sc0"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base blas-ffi blaze-html boxes comfort-array comfort-array-shape - deepseq fixed-length guarded-allocation hyper lapack-ffi lazyio - netlib-ffi non-empty semigroups Stream tagged text tfp transformers - utility-ht + deepseq guarded-allocation hyper lapack-ffi lazyio netlib-ffi + non-empty semigroups Stream tagged text tfp transformers utility-ht ]; testHaskellDepends = [ base ChasingBottoms comfort-array comfort-array-shape data-ref @@ -177739,6 +178088,8 @@ self: { pname = "lapack-ffi-tools"; version = "0.1.3.1"; sha256 = "1mf41wcbxkgiv71c3jjwhsdg9d7qpa88qsifpa5vgplpx2v1p6ya"; + revision = "1"; + editedCabalFile = "1mlqmyfsz65if9in8i8cyzm2nbqka00lwg15s2m0hq61sg3kfyfs"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -179981,7 +180332,7 @@ self: { description = "Tutorial for the lens library"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; broken = true; }) {}; @@ -180079,8 +180430,8 @@ self: { }: mkDerivation { pname = "lentil"; - version = "1.5.5.2"; - sha256 = "0ccm21y14q87r8w888js9s6cb615mi2hif0j1ca84x934q0r2a8v"; + version = "1.5.5.4"; + sha256 = "04srkha0nv4k7gxma3q09p9zph6z6v0blpvqivn46g071zdf76cj"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -181397,6 +181748,8 @@ self: { libraryToolDepends = [ c2hs ]; description = "FFI bindings to libssh2 SSH2 client library (http://libssh2.org/)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; }) {inherit (pkgs) libssh2;}; "libssh2-conduit" = callPackage @@ -181414,6 +181767,7 @@ self: { ]; description = "Conduit wrappers for libssh2 FFI bindings (see libssh2 package)"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "libstackexchange" = callPackage @@ -182629,12 +182983,29 @@ self: { broken = true; }) {}; + "linear-programming" = callPackage + ({ mkDerivation, base, comfort-array, non-empty, QuickCheck, random + , transformers, utility-ht + }: + mkDerivation { + pname = "linear-programming"; + version = "0.0"; + sha256 = "0bpsm47g6knpwh4gqg2myljrivpk716ip41g3cpxvpsnq0qqz57i"; + libraryHaskellDepends = [ + base comfort-array non-empty QuickCheck random transformers + utility-ht + ]; + description = "Linear Programming basic definitions"; + license = lib.licenses.bsd3; + maintainers = [ lib.maintainers.thielema ]; + }) {}; + "linear-smc" = callPackage ({ mkDerivation, array, base, constraints }: mkDerivation { pname = "linear-smc"; - version = "1.1.1"; - sha256 = "1zg8j3m7wa3df0wcyqrys8v7zhszgx653r6pi39ny84kd5dlwg2i"; + version = "2.0.2"; + sha256 = "0dzbqdjrx5c3nkdddmijrd153wydi66yfgjr85279440a68nqbcx"; libraryHaskellDepends = [ base constraints ]; testHaskellDepends = [ array base constraints ]; description = "Build SMC morphisms using linear types"; @@ -182698,26 +183069,31 @@ self: { "linearmap-category" = callPackage ({ mkDerivation, base, call-stack, constrained-categories - , containers, data-default-class, free-vector-spaces, hashable - , ieee754, lens, linear, manifolds-core, MemoTrie, QuickCheck - , semigroups, tagged, tasty, tasty-quickcheck, template-haskell - , th-abstraction, transformers, vector, vector-space + , containers, data-default-class, free-vector-spaces + , ghc-typelits-natnormalise, hashable, ieee754, lens, linear + , manifolds-core, MemoTrie, QuickCheck, semigroups, singletons + , singletons-base, tagged, tasty, tasty-quickcheck + , template-haskell, th-abstraction, transformers, type-natural + , vector, vector-space }: mkDerivation { pname = "linearmap-category"; - version = "0.5.0.1"; - sha256 = "0d8abx928mr0cw04xja5ffybzlmvb4pq6g4cdm9px5r7x567hpb5"; + version = "0.6.0.1"; + sha256 = "1rwa6jlkxvgzsw6v717gk5981rxdhk78zvv1smninlwsrjwc5j0i"; + revision = "1"; + editedCabalFile = "0qj860xn0k36vr45zpchskk3y86k8529qspz53f600nvzgd4r4cz"; libraryHaskellDepends = [ base call-stack constrained-categories containers - data-default-class free-vector-spaces hashable ieee754 lens linear - manifolds-core MemoTrie QuickCheck semigroups tagged - template-haskell th-abstraction transformers vector vector-space + data-default-class free-vector-spaces ghc-typelits-natnormalise + hashable ieee754 lens linear manifolds-core MemoTrie QuickCheck + semigroups singletons singletons-base tagged template-haskell + th-abstraction transformers type-natural vector vector-space ]; testHaskellDepends = [ base constrained-categories linear manifolds-core QuickCheck tasty - tasty-quickcheck vector-space + tasty-quickcheck vector vector-space ]; - description = "Native, complete, matrix-free linear algebra"; + description = "Native, complete-ish, matrix-free linear algebra"; license = lib.licenses.gpl3Only; hydraPlatforms = lib.platforms.none; }) {}; @@ -183951,7 +184327,7 @@ self: { testHaskellDepends = [ base doctest ]; description = "List monad transformer"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "list-tries" = callPackage @@ -184213,6 +184589,32 @@ self: { mainProgram = "literatex"; }) {}; + "literatex_0_3_0_0" = callPackage + ({ mkDerivation, ansi-wl-pprint, base, bytestring, conduit + , filepath, optparse-applicative, tasty, tasty-hunit, text, ttc + , unliftio + }: + mkDerivation { + pname = "literatex"; + version = "0.3.0.0"; + sha256 = "0ph3s26hxvnkdqc3s09d3ka1p224zmgwc3k6zi7jmma0sgrmnm9x"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring conduit text ttc unliftio + ]; + executableHaskellDepends = [ + ansi-wl-pprint base optparse-applicative ttc + ]; + testHaskellDepends = [ + base bytestring filepath tasty tasty-hunit text ttc unliftio + ]; + description = "transform literate source code to Markdown"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "literatex"; + }) {}; + "little-earley" = callPackage ({ mkDerivation, base, containers, mtl, tasty, tasty-hunit }: mkDerivation { @@ -184263,6 +184665,23 @@ self: { license = lib.licenses.bsd3; }) {}; + "little-rio_2_0_0" = callPackage + ({ mkDerivation, base, exceptions, little-logger, microlens, mtl + , primitive, resourcet, unliftio-core + }: + mkDerivation { + pname = "little-rio"; + version = "2.0.0"; + sha256 = "1hg1vf29lvsg2p8n7w10vy2kb7qgsaw3ybj5hsgxcr2v1inafgil"; + libraryHaskellDepends = [ + base exceptions little-logger microlens mtl primitive resourcet + unliftio-core + ]; + description = "When you need just the RIO monad"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "live-sequencer" = callPackage ({ mkDerivation, alsa-core, alsa-seq, base, bytestring, cgi , concurrent-split, containers, data-accessor @@ -185758,6 +186177,21 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "logging-effect-colors" = callPackage + ({ mkDerivation, ansi-terminal, base, logging-effect, prettyprinter + , text + }: + mkDerivation { + pname = "logging-effect-colors"; + version = "0.1.0.0"; + sha256 = "1rdcxp7nfy8sajqrw5wz5j531dn86pkwa70g1kgsvgb1wqm6zlbb"; + libraryHaskellDepends = [ + ansi-terminal base logging-effect prettyprinter text + ]; + description = "Log messages in color"; + license = lib.licenses.bsd3; + }) {}; + "logging-effect-extra" = callPackage ({ mkDerivation, base, logging-effect, logging-effect-extra-file , logging-effect-extra-handler, prettyprinter @@ -185819,6 +186253,17 @@ self: { broken = true; }) {}; + "logging-effect-syslog" = callPackage + ({ mkDerivation, base, bytestring, hsyslog, logging-effect }: + mkDerivation { + pname = "logging-effect-syslog"; + version = "0.1.0.0"; + sha256 = "15wlxyvn1jb4r2x32k2hmamc8jislzvfnf317lvhsvz6xbgsgkp4"; + libraryHaskellDepends = [ base bytestring hsyslog logging-effect ]; + description = "Log messages to a posix system log via logging-effect"; + license = lib.licenses.bsd3; + }) {}; + "logging-facade" = callPackage ({ mkDerivation, base, call-stack, hspec, hspec-discover , transformers @@ -187454,8 +187899,8 @@ self: { ({ mkDerivation, base, blaze-builder, lucid, text, transformers }: mkDerivation { pname = "lucid-svg"; - version = "0.7.1"; - sha256 = "1crfq5z0acv8ci7cj62dg1sy9hmsgpzhjwrjky9rkfnjs2brbf0n"; + version = "0.7.1.1"; + sha256 = "16yijfnbm58cw8b2bfx10xnn55z96xjdhjd488a76ypcfl2qzfrd"; libraryHaskellDepends = [ base blaze-builder lucid text transformers ]; @@ -187482,6 +187927,8 @@ self: { pname = "lucid2"; version = "0.0.20221012"; sha256 = "00r3qmxrs3jh3v4gl5m38j86ihh78q4vmsk4bz2pbcc8gh2yficj"; + revision = "1"; + editedCabalFile = "029vhllgcdayrk34dssqirf1xpsr7z9jmi1lrh7qg2m061ypipxf"; libraryHaskellDepends = [ base blaze-builder bytestring containers mtl text transformers ]; @@ -189167,7 +189614,7 @@ self: { libraryHaskellDepends = [ base transformers ]; description = "A monad for managed values"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "managed-functions" = callPackage @@ -189613,8 +190060,8 @@ self: { }: mkDerivation { pname = "mandrill"; - version = "0.5.6.0"; - sha256 = "1p58c83dqbpsl0a41s6xnnwbygk04gmsg51gfqprjkvzbgl2h7zq"; + version = "0.5.7.0"; + sha256 = "13g07wlg9z1yci521f3y34i9lw24x5d4737k22s2rkajbrgdl98x"; libraryHaskellDepends = [ aeson base base64-bytestring blaze-html bytestring containers email-validate http-client http-client-tls http-types microlens-th @@ -189761,15 +190208,15 @@ self: { }) {}; "manifolds-core" = callPackage - ({ mkDerivation, base, call-stack, equational-reasoning, tagged + ({ mkDerivation, base, call-stack, equational-reasoning , vector-space }: mkDerivation { pname = "manifolds-core"; - version = "0.6.0.0"; - sha256 = "000lfkvx6j3cf6dzccfncazlkqj9bjfl04x0d36k8w78d20md5kj"; + version = "0.6.1.0"; + sha256 = "1fw6985ccg173x3449s81yzgnn3irhyzbw8i8jajyzqawr7kasp4"; libraryHaskellDepends = [ - base call-stack equational-reasoning tagged vector-space + base call-stack equational-reasoning vector-space ]; description = "The basic classes for the manifolds hierarchy"; license = lib.licenses.gpl3Only; @@ -190442,10 +190889,8 @@ self: { }: mkDerivation { pname = "massiv"; - version = "1.0.3.0"; - sha256 = "1q0qp4xz7z3r70581lry9bkldjv195wfagazwbq6lkxrf8i25lx1"; - revision = "1"; - editedCabalFile = "1jrbn37lpmipi11ab4n4wdnp36349kwi7gqb5s5s5qigq8207gk9"; + version = "1.0.4.0"; + sha256 = "0xsrls5kxlrm4664ssdphx588zbrh41wgf84afqdmia8x8mm5kl5"; libraryHaskellDepends = [ base bytestring deepseq exceptions primitive random scheduler unliftio-core vector vector-stream @@ -190919,6 +191364,29 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "mathlist" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "mathlist"; + version = "0.1.0.4"; + sha256 = "1zcnjw96n76pfmz3jnci76abcxxb16ahzxlcll0sm2qgn604yk5a"; + libraryHaskellDepends = [ base ]; + description = "Math using lists, including FFT and Wavelet"; + license = lib.licenses.bsd3; + }) {}; + + "mathlist_0_2_0_0" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "mathlist"; + version = "0.2.0.0"; + sha256 = "1rj16k64svph91v38g3r3nllpzy93522kcci26alfxkphhwra4ak"; + libraryHaskellDepends = [ base ]; + description = "Math using lists, including FFT and Wavelet"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "matlab" = callPackage ({ mkDerivation, array, base, Cabal, containers, eng, exceptions , filepath, mat, mx, path, profunctors, template-haskell, text @@ -191689,6 +192157,22 @@ self: { broken = true; }) {}; + "md5" = callPackage + ({ mkDerivation, base, bytebuild, byteslice, natural-arithmetic + , primitive + }: + mkDerivation { + pname = "md5"; + version = "0.1.0.0"; + sha256 = "0h0m6wwis1p2dl689wllywp338yxyykghfnznsq6jfb9vdfavzs4"; + libraryHaskellDepends = [ base bytebuild byteslice primitive ]; + testHaskellDepends = [ + base bytebuild byteslice natural-arithmetic primitive + ]; + description = "MD5 Hash"; + license = lib.licenses.bsd3; + }) {}; + "mdapi" = callPackage ({ mkDerivation, aeson, base, bytestring, data-default, lens , lens-aeson, text, transformers, wreq @@ -192186,15 +192670,15 @@ self: { license = lib.licenses.bsd2; }) {}; - "megaparsec_9_3_0" = callPackage + "megaparsec_9_3_1" = callPackage ({ mkDerivation, base, bytestring, case-insensitive, containers , criterion, deepseq, mtl, parser-combinators, scientific, text , transformers, weigh }: mkDerivation { pname = "megaparsec"; - version = "9.3.0"; - sha256 = "01b05s3chlidz48lrwlyffw712vy4hlfijlh4wj9lq0fdy2b1z0r"; + version = "9.3.1"; + sha256 = "00dp79sssb2j9w0sbzphkqjn49xzrafd16gkqda5ngqhbjdniw73"; libraryHaskellDepends = [ base bytestring case-insensitive containers deepseq mtl parser-combinators scientific text transformers @@ -192231,7 +192715,7 @@ self: { license = lib.licenses.bsd2; }) {}; - "megaparsec-tests_9_3_0" = callPackage + "megaparsec-tests_9_3_1" = callPackage ({ mkDerivation, base, bytestring, case-insensitive, containers , hspec, hspec-discover, hspec-expectations, hspec-megaparsec , megaparsec, mtl, parser-combinators, QuickCheck, scientific @@ -192239,8 +192723,8 @@ self: { }: mkDerivation { pname = "megaparsec-tests"; - version = "9.3.0"; - sha256 = "1ra1y1gdcxav0xi2djril3l3kb7kvzcjnmxxspmn2nj2921sb0yi"; + version = "9.3.1"; + sha256 = "01gd6xlqfazpbawzwgbk0ag86dq8nv5qdrhny9b7hrks3i3b558m"; libraryHaskellDepends = [ base bytestring containers hspec hspec-expectations hspec-megaparsec megaparsec mtl QuickCheck text transformers @@ -193691,8 +194175,8 @@ self: { pname = "microaeson"; version = "0.1.0.1"; sha256 = "0rx5gm7apazc0sm65v687ab5106ximka9khizxq1lbckd2x0cq3q"; - revision = "2"; - editedCabalFile = "1b9sdks42sl19i3rvsv71bjv0jjxi8b5mkbi14iqmybw18q1a2pk"; + revision = "3"; + editedCabalFile = "12grcl9hpw3585k6h2rswgj4phfpqb3i1ygk2jympsngyqq5kvjf"; libraryHaskellDepends = [ array base bytestring containers deepseq fail text ]; @@ -194164,8 +194648,8 @@ self: { pname = "midi-music-box"; version = "0.0.1.2"; sha256 = "0rnjwis6y0lnyfjxnxqk3zsh78ylccq5v21avb97vybmj0pld1l9"; - revision = "2"; - editedCabalFile = "1w595kidg493vnv871ga2xsh94g2f80yxn4k5mlrm0jip45xxi7m"; + revision = "3"; + editedCabalFile = "0yh1mqpsw12dci8fgw124jbz5588v5vxdzggrn67x1pd4wvjmr8k"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -194932,6 +195416,44 @@ self: { license = lib.licenses.asl20; }) {}; + "minio-hs_1_7_0" = callPackage + ({ mkDerivation, aeson, base, base64-bytestring, binary, bytestring + , case-insensitive, conduit, conduit-extra, connection, cryptonite + , cryptonite-conduit, digest, directory, filepath, http-client + , http-client-tls, http-conduit, http-types, ini, memory + , network-uri, QuickCheck, raw-strings-qq, relude, resourcet, retry + , tasty, tasty-hunit, tasty-quickcheck, tasty-smallcheck, text + , time, time-units, transformers, unliftio, unliftio-core + , unordered-containers, xml-conduit + }: + mkDerivation { + pname = "minio-hs"; + version = "1.7.0"; + sha256 = "154n2pw89xzidhpkn0c6b26cslg29y80v3309dww17dxiccl9iwg"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base base64-bytestring binary bytestring case-insensitive + conduit conduit-extra connection cryptonite cryptonite-conduit + digest directory filepath http-client http-client-tls http-conduit + http-types ini memory network-uri relude resourcet retry text time + time-units transformers unliftio unliftio-core unordered-containers + xml-conduit + ]; + testHaskellDepends = [ + aeson base base64-bytestring binary bytestring case-insensitive + conduit conduit-extra connection cryptonite cryptonite-conduit + digest directory filepath http-client http-client-tls http-conduit + http-types ini memory network-uri QuickCheck raw-strings-qq relude + resourcet retry tasty tasty-hunit tasty-quickcheck tasty-smallcheck + text time time-units transformers unliftio unliftio-core + unordered-containers xml-conduit + ]; + description = "A MinIO Haskell Library for Amazon S3 compatible cloud storage"; + license = lib.licenses.asl20; + hydraPlatforms = lib.platforms.none; + }) {}; + "minions" = callPackage ({ mkDerivation, ansi-terminal, base, MissingH, process, time }: mkDerivation { @@ -195743,8 +196265,8 @@ self: { pname = "mmark-cli"; version = "0.0.5.1"; sha256 = "1an1rc7gdl2209d3agxx1dfl61zsc2wg5nx9cwdf50spmlgs3cr0"; - revision = "2"; - editedCabalFile = "1raxvhsv3b3lni4d2fqf9b1rs7lsqha13baizpg9hv7w0f8zss8m"; + revision = "3"; + editedCabalFile = "14l6ngccsxjx0kpkfhx7hzq44swb9dwlfpji1y9ap283v18rkrmb"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -195790,7 +196312,7 @@ self: { description = "Monad morphisms"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "mmorph" = callPackage @@ -195806,7 +196328,7 @@ self: { ]; description = "Monad morphisms"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "mmsyn2" = callPackage @@ -198921,6 +199443,8 @@ self: { pname = "monomer"; version = "1.5.1.0"; sha256 = "13z6ls2y8d4r98dwxl8d65xf0rcs4i0v65zlq93i7yk5zcyw0s8i"; + revision = "2"; + editedCabalFile = "0lqkppaak0bxmnihrjpxbav2p9pdcsyybb5sshan0wbwfvxyqh84"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -198946,6 +199470,7 @@ self: { ]; description = "A GUI library for writing native Haskell applications"; license = lib.licenses.bsd3; + badPlatforms = lib.platforms.darwin; mainProgram = "dev-test-app"; }) {inherit (pkgs) glew;}; @@ -198955,8 +199480,8 @@ self: { }: mkDerivation { pname = "monomer-flatpak-example"; - version = "0.0.7.0"; - sha256 = "06yacsb0911cdgm9dlsz817794jpfwq7pd9r9gxhn9rk1a0h3l6s"; + version = "0.0.8.0"; + sha256 = "0xasnb61x6ixl57hsbsx134msbwlfma3b6szq1ndp5aj149r0fl7"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -198992,6 +199517,7 @@ self: { testToolDepends = [ hspec-discover ]; description = "A datagrid widget for the Monomer library"; license = lib.licenses.mit; + badPlatforms = lib.platforms.darwin; }) {}; "monomorphic" = callPackage @@ -199814,7 +200340,7 @@ self: { license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; mainProgram = "morte"; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; broken = true; }) {}; @@ -200238,7 +200764,7 @@ self: { executableHaskellDepends = [ base ]; description = "Save your spot when watching movies with @mplayer@"; license = lib.licenses.bsd3; - badPlatforms = [ "aarch64-linux" ]; + badPlatforms = [ "aarch64-linux" ] ++ lib.platforms.darwin; mainProgram = "mplayer-spot"; }) {}; @@ -201752,8 +202278,8 @@ self: { ({ mkDerivation, base, doctest, sop-core }: mkDerivation { pname = "multicurryable"; - version = "0.1.0.1"; - sha256 = "1d75pksld6cd9p39avjq54qcb0lhjgm8b78hl1521df17c1yi5y6"; + version = "0.1.1.0"; + sha256 = "0v2izrfnjchbrxgq33zxdc1f8rli8l5blmmj5xdk0ay5nnfsgyk4"; libraryHaskellDepends = [ base sop-core ]; testHaskellDepends = [ base doctest sop-core ]; description = "Uncurry functions with multiple arguments"; @@ -202980,7 +203506,7 @@ self: { description = "Model-view-controller"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; broken = true; }) {}; @@ -202996,7 +203522,7 @@ self: { description = "Concurrent and combinable updates"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "mvclient" = callPackage @@ -204320,6 +204846,8 @@ self: { pname = "nanovg"; version = "0.8.1.0"; sha256 = "1yzabd2l8z77dsgby97dzv0h38a6w554kmhp6hsfx3j24n0h0rnv"; + revision = "1"; + editedCabalFile = "1hczgvm5y5i8sw9yflsjmh9lzamqy6f6r5lmp06siai003ff1jxz"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base bytestring containers text vector ]; @@ -204329,6 +204857,7 @@ self: { testHaskellDepends = [ base containers hspec inline-c QuickCheck ]; description = "Haskell bindings for nanovg"; license = lib.licenses.isc; + badPlatforms = lib.platforms.darwin; }) {inherit (pkgs) freetype; inherit (pkgs) glew; inherit (pkgs) libGL; inherit (pkgs) libGLU; inherit (pkgs.xorg) libX11;}; @@ -205641,8 +206170,8 @@ self: { pname = "netrc"; version = "0.2.0.0"; sha256 = "11iax3ick0im397jyyjkny7lax9bgrlgk90a25dp2jsglkphfpls"; - revision = "9"; - editedCabalFile = "0srgxcgzzkrq96zg8vk61wnr4mrvgcxbgpdh2kklsfc2p6phzzp7"; + revision = "10"; + editedCabalFile = "1nfv0851h05h7g2fjz54z0myas9yfcnmcp9ncmzxnb3kdvvzbfgn"; libraryHaskellDepends = [ base bytestring deepseq parsec ]; testHaskellDepends = [ base bytestring tasty tasty-golden tasty-quickcheck @@ -205872,6 +206401,8 @@ self: { pname = "network"; version = "2.6.3.1"; sha256 = "1rl2gl37cf4k0ddsq93q15fwdz1l25nhl4w205krbh7d5dg5y12p"; + revision = "1"; + editedCabalFile = "1mfwybinwdfb05pvlg3hkiql4pazp9rp1agz777ijj44njkgn416"; libraryHaskellDepends = [ base bytestring unix ]; testHaskellDepends = [ base bytestring doctest HUnit test-framework test-framework-hunit @@ -205887,8 +206418,8 @@ self: { }: mkDerivation { pname = "network"; - version = "3.1.2.9"; - sha256 = "006rzlzanc9izyh4ha0p7xkxvffxpgkyf43yj31yrgrxcpj9bgqc"; + version = "3.1.4.0"; + sha256 = "13hmp4va00ydpzbnwjzgf5wd5iy7373j0f7baxrj1ncmmjps4lml"; libraryHaskellDepends = [ base bytestring deepseq directory ]; testHaskellDepends = [ base bytestring directory hspec HUnit QuickCheck temporary @@ -206588,6 +207119,18 @@ self: { license = lib.licenses.bsd3; }) {}; + "network-run_0_2_5" = callPackage + ({ mkDerivation, base, bytestring, network }: + mkDerivation { + pname = "network-run"; + version = "0.2.5"; + sha256 = "08662w7ja9w4a4fwikaawxnxcszkd0mdmaajmshas2dd25xyikwi"; + libraryHaskellDepends = [ base bytestring network ]; + description = "Simple network runner library"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "network-server" = callPackage ({ mkDerivation, base, network, unix }: mkDerivation { @@ -207997,7 +208540,9 @@ self: { description = "Parse and render *.drv files"; license = lib.licenses.bsd3; mainProgram = "pretty-derivation"; - maintainers = [ lib.maintainers.Gabriel439 lib.maintainers.sorki ]; + maintainers = [ + lib.maintainers.Gabriella439 lib.maintainers.sorki + ]; }) {}; "nix-diff" = callPackage @@ -208031,7 +208576,7 @@ self: { license = lib.licenses.bsd3; mainProgram = "nix-diff"; maintainers = [ - lib.maintainers.Gabriel439 lib.maintainers.sorki + lib.maintainers.Gabriella439 lib.maintainers.sorki lib.maintainers.terlar ]; }) {}; @@ -210590,8 +211135,8 @@ self: { }: mkDerivation { pname = "nvfetcher"; - version = "0.6.0.0"; - sha256 = "0hhfnz5q076z92g1m4yx7y5qsxfimngkqx9r0781hkrcdmi1g2x8"; + version = "0.6.1.0"; + sha256 = "1899x279x236h71infk6h6cxw6sckhzh2z15frq92wpl6viq9qwz"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -211555,8 +212100,8 @@ self: { }: mkDerivation { pname = "ogma-cli"; - version = "1.0.8"; - sha256 = "1h578lx0pclymhg97m6rzrcjvd5892gn02cmkx6dpy25rvm7fbcc"; + version = "1.0.9"; + sha256 = "1c2hg3wgx8jlrgch2mqasskjhx7d9b7ycixndp5rfls4jb94bipa"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ base ogma-core optparse-applicative ]; @@ -211578,8 +212123,8 @@ self: { }: mkDerivation { pname = "ogma-core"; - version = "1.0.8"; - sha256 = "0qyh0vw4x20mgggp1c6c7gialzmjrkan0wgays3h2x0hczb88gfv"; + version = "1.0.9"; + sha256 = "0fl0wg9xxc9sjh10hx35qzs3mi9ql9m5cy4z1hvlm0kl4cz8ach1"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson base filepath IfElse mtl ogma-extra ogma-language-c @@ -211601,8 +212146,8 @@ self: { }: mkDerivation { pname = "ogma-extra"; - version = "1.0.8"; - sha256 = "0npb83nxi3mglm1ki9fd7vwdc5nkfyhjaqgcrhmi71v2agjwi06v"; + version = "1.0.9"; + sha256 = "14g55a7lyd363p06kvjnjj06rp4hn6plp23ivhsl829hs2rcpq1d"; libraryHaskellDepends = [ base bytestring Cabal directory filepath ]; @@ -211619,8 +212164,8 @@ self: { }: mkDerivation { pname = "ogma-language-c"; - version = "1.0.8"; - sha256 = "1xpcxm04n9p6fs5c5gkr72y92fxdj45bsmbj3mws0w6jaiw3pb8b"; + version = "1.0.9"; + sha256 = "0flbxfpylbad4fvy12lxs7lhzd1bxv25gr2pi9ck3chgwyid39ff"; setupHaskellDepends = [ base BNFC Cabal process ]; libraryHaskellDepends = [ array base ]; testHaskellDepends = [ @@ -211638,8 +212183,8 @@ self: { }: mkDerivation { pname = "ogma-language-cocospec"; - version = "1.0.8"; - sha256 = "00n8bapl7vdbirs07kp9swr604fvfi52ywf89z86y395lgamss4c"; + version = "1.0.9"; + sha256 = "0a913c3xqznipkkybzym3dm5x915qa2ci6rzd4gb3rqk1f1wlhf2"; setupHaskellDepends = [ base BNFC Cabal process ]; libraryHaskellDepends = [ array base ]; testHaskellDepends = [ @@ -211655,8 +212200,8 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "ogma-language-copilot"; - version = "1.0.8"; - sha256 = "0l646ddd5v8ivijp21j405jy1dqyp9kmmzxqfcwx0i37a7spy87j"; + version = "1.0.9"; + sha256 = "007psfn5r8d1fgrpx1h65a2qwh6w4hh9ym1hwip5f1c7yvlrf9sk"; libraryHaskellDepends = [ base ]; description = "Ogma: Runtime Monitor translator: Copilot Language Endpoints"; license = "unknown"; @@ -211669,8 +212214,8 @@ self: { }: mkDerivation { pname = "ogma-language-fret-cs"; - version = "1.0.8"; - sha256 = "0wcvxc955r8d0919xqi0f3nf356np52i14k464dd3xk5s1nsm4nm"; + version = "1.0.9"; + sha256 = "1gr38xg0y4bcg8yyk70bnx3d9qd8vigf43h6b8d415p363kwzkjw"; libraryHaskellDepends = [ aeson base ogma-language-cocospec ogma-language-smv ]; @@ -211690,8 +212235,8 @@ self: { }: mkDerivation { pname = "ogma-language-fret-reqs"; - version = "1.0.8"; - sha256 = "0fgjkqn251rpzcx4x34ccm3hx0ppygk3234ga2bfy56w73nkggqc"; + version = "1.0.9"; + sha256 = "1n3y57zhq2qyy3bplkk1x6b9vgmxdnvsdcflnzv8wywl4v1bbb7a"; libraryHaskellDepends = [ aeson base ogma-language-cocospec ogma-language-smv text ]; @@ -211710,8 +212255,8 @@ self: { }: mkDerivation { pname = "ogma-language-smv"; - version = "1.0.8"; - sha256 = "1c8143pdmxgkjfzc85pbf2zdlhwvlrn1wla2jna67r30sp9qrxg2"; + version = "1.0.9"; + sha256 = "151s4hvczr8kjfn5pq4h34hi0qqxlac2biinp29qx15pzh4ayijy"; setupHaskellDepends = [ base BNFC Cabal process ]; libraryHaskellDepends = [ array base ]; testHaskellDepends = [ @@ -212548,6 +213093,8 @@ self: { pname = "oops"; version = "0.2.0.1"; sha256 = "0n5n9503kx5scpkync4mya80arqh3q4y96pi9b3bql3r33kxnzg2"; + revision = "1"; + editedCabalFile = "0j4naz61zlsahm5x9k5f8s1yh3gics6r7bwb1qyrwpf90590ahx7"; libraryHaskellDepends = [ base exceptions mtl QuickCheck transformers ]; @@ -214325,8 +214872,8 @@ self: { }: mkDerivation { pname = "optima"; - version = "0.4.0.3"; - sha256 = "0pah3p4f5j8ah2ccb5mpq1dcjrlzvwg6pf0yfqhnq4m7j1nqhzlj"; + version = "0.4.0.4"; + sha256 = "0p7q05f7xmd5y7rd35zcgyvqp8jh945qp5242vshbr875cy25dj5"; libraryHaskellDepends = [ attoparsec attoparsec-data base optparse-applicative text text-builder @@ -214455,7 +215002,7 @@ self: { libraryHaskellDepends = [ base ]; description = "Optional function arguments"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "options" = callPackage @@ -214513,8 +215060,8 @@ self: { }: mkDerivation { pname = "optparse-applicative"; - version = "0.17.0.0"; - sha256 = "097p1bkvw9r3rvcr65w53yw14drb0s46ldkkl1jbmq5g7m6jwnw2"; + version = "0.17.1.0"; + sha256 = "1vx5w03vvfr3hdk79lvl34x8bxj5xbx0xh53mmnmxi9r05scnyfi"; libraryHaskellDepends = [ ansi-wl-pprint base process transformers transformers-compat ]; @@ -214523,6 +215070,24 @@ self: { license = lib.licenses.bsd3; }) {}; + "optparse-applicative_0_18_1_0" = callPackage + ({ mkDerivation, base, prettyprinter, prettyprinter-ansi-terminal + , process, QuickCheck, text, transformers, transformers-compat + }: + mkDerivation { + pname = "optparse-applicative"; + version = "0.18.1.0"; + sha256 = "14f4xihvklrdbc0banwzh5wwqfmyi1d34r43hsw2ks16zns1m0b3"; + libraryHaskellDepends = [ + base prettyprinter prettyprinter-ansi-terminal process text + transformers transformers-compat + ]; + testHaskellDepends = [ base QuickCheck ]; + description = "Utilities and combinators for parsing command line options"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "optparse-applicative-cmdline-util" = callPackage ({ mkDerivation, attoparsec, base, optparse-applicative, text }: mkDerivation { @@ -214600,7 +215165,7 @@ self: { executableHaskellDepends = [ base ]; description = "Auto-generate a command-line parser for your datatype"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "optparse-generic_1_5_0" = callPackage @@ -214621,7 +215186,7 @@ self: { description = "Auto-generate a command-line parser for your datatype"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "optparse-helper" = callPackage @@ -215308,6 +215873,8 @@ self: { pname = "ormolu"; version = "0.5.3.0"; sha256 = "13x0iasi2mrwv6mnhg2clkaa0znm6i058vssyxri9mdi147sb3pk"; + revision = "2"; + editedCabalFile = "0p9q9za35ky5wqnnppr5d2bw2ql7b09yfy460i2fsjk5hyafdvkx"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -215330,7 +215897,7 @@ self: { mainProgram = "ormolu"; }) {}; - "ormolu_0_6_0_1" = callPackage + "ormolu_0_7_0_0" = callPackage ({ mkDerivation, ansi-terminal, array, base, binary, bytestring , Cabal-syntax, containers, deepseq, Diff, directory, file-embed , filepath, ghc-lib-parser, hspec, hspec-discover, hspec-megaparsec @@ -215339,8 +215906,10 @@ self: { }: mkDerivation { pname = "ormolu"; - version = "0.6.0.1"; - sha256 = "1idmqky5whprjybsf3pmwnxbdqim2qpzk25dqzhkiskpkm1vdkpl"; + version = "0.7.0.0"; + sha256 = "07bwcki2xp2g5q3jpll8675yawr1x6nk3zg1yns8mdw085a98g7s"; + revision = "1"; + editedCabalFile = "1fm3vi1nk18p623vxw197inlqfb8gwg4jiy88s63id0j7sdlvzqh"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -215349,12 +215918,13 @@ self: { megaparsec MemoTrie mtl syb text ]; executableHaskellDepends = [ - base containers directory filepath ghc-lib-parser + base Cabal-syntax containers directory filepath ghc-lib-parser optparse-applicative text th-env ]; testHaskellDepends = [ base Cabal-syntax containers directory filepath ghc-lib-parser - hspec hspec-megaparsec path path-io QuickCheck temporary text + hspec hspec-megaparsec megaparsec path path-io QuickCheck temporary + text ]; testToolDepends = [ hspec-discover ]; description = "A formatter for Haskell source code"; @@ -215840,6 +216410,80 @@ self: { broken = true; }) {}; + "pa-error-tree" = callPackage + ({ mkDerivation, base, containers, pa-prelude }: + mkDerivation { + pname = "pa-error-tree"; + version = "0.1.0.0"; + sha256 = "0ffnz0642kqkjancq5smjal6ap59p4jc8c8zr0qhv7wdbs83sbgq"; + libraryHaskellDepends = [ base containers pa-prelude ]; + description = "Collect a tree of errors and pretty-print"; + license = lib.licenses.bsd3; + }) {}; + + "pa-field-parser" = callPackage + ({ mkDerivation, aeson, aeson-better-errors, attoparsec, base + , case-insensitive, containers, pa-error-tree, pa-prelude + , scientific, semigroupoids, text + }: + mkDerivation { + pname = "pa-field-parser"; + version = "0.1.0.1"; + sha256 = "07yp19w7lbjdi2hxrsi15pf77lc4rkkl7axawbk96scbi5lh7zg7"; + libraryHaskellDepends = [ + aeson aeson-better-errors attoparsec base case-insensitive + containers pa-error-tree pa-prelude scientific semigroupoids text + ]; + description = "“Vertical” parsing of values"; + license = lib.licenses.bsd3; + }) {}; + + "pa-json" = callPackage + ({ mkDerivation, aeson, aeson-better-errors, base, containers + , hspec-core, hspec-expectations, pa-error-tree, pa-label + , pa-prelude, scientific, text, time, vector + }: + mkDerivation { + pname = "pa-json"; + version = "0.1.0.0"; + sha256 = "0lka7viqsbrh2vb1snhs1ryi6mcxf5l404rjmq65mqbh5y6gf0pc"; + libraryHaskellDepends = [ + aeson aeson-better-errors base containers hspec-core + hspec-expectations pa-error-tree pa-label pa-prelude scientific + text time vector + ]; + description = "Our JSON parsers/encoders"; + license = lib.licenses.bsd3; + }) {}; + + "pa-label" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "pa-label"; + version = "0.1.0.1"; + sha256 = "0dcdxqkpyfjig3ywiazyml6hc6ipnx8ix26cv16aj46r31vsnc81"; + libraryHaskellDepends = [ base ]; + description = "Labels, and labelled tuples and enums (GHC >9.2)"; + license = lib.licenses.bsd3; + }) {}; + + "pa-prelude" = callPackage + ({ mkDerivation, base, bytestring, containers, error, exceptions + , mtl, profunctors, PyF, semigroupoids, text, these + , validation-selective + }: + mkDerivation { + pname = "pa-prelude"; + version = "0.1.0.0"; + sha256 = "1as9kj351ph10nqzqxfnqyhnm7d10gc0jlnh3q9m8wdzmkimciam"; + libraryHaskellDepends = [ + base bytestring containers error exceptions mtl profunctors PyF + semigroupoids text these validation-selective + ]; + description = "The Possehl Analytics Prelude"; + license = lib.licenses.bsd3; + }) {}; + "pack" = callPackage ({ mkDerivation, array, base, bytestring, lens, transformers , vector @@ -216181,8 +216825,8 @@ self: { }: mkDerivation { pname = "pact-time"; - version = "0.2.0.1"; - sha256 = "1k55bwf7crkr16szyjyzwc5f4h2r0x3yxaajvvffnqkbjpq3zwy0"; + version = "0.2.0.2"; + sha256 = "0vkrz5mk2gwxx46x9mjx2b0wkkd88xylg52pf3bhbyp08z6g00p5"; libraryHaskellDepends = [ aeson attoparsec base bytestring cereal clock Decimal deepseq microlens mtl text vector vector-space @@ -216798,24 +217442,24 @@ self: { maintainers = [ lib.maintainers.maralorn ]; }) {}; - "pandoc-crossref_0_3_15_2" = callPackage + "pandoc-crossref_0_3_16_0" = callPackage ({ mkDerivation, base, containers, criterion, data-default, deepseq - , directory, filepath, gitrev, hspec, microlens, microlens-mtl - , microlens-th, mtl, open-browser, optparse-applicative, pandoc - , pandoc-cli, pandoc-types, syb, template-haskell, temporary, text - , utility-ht + , directory, filepath, gitrev, hspec, microlens, microlens-ghc + , microlens-mtl, microlens-th, mtl, open-browser + , optparse-applicative, pandoc, pandoc-cli, pandoc-types, syb + , template-haskell, temporary, text, utility-ht }: mkDerivation { pname = "pandoc-crossref"; - version = "0.3.15.2"; - sha256 = "15lwg85xwmkws4s8mpdmm8bv7almz495njiaqbvf2d0mlzl18aq3"; + version = "0.3.16.0"; + sha256 = "1vp4x4vgc17y0c4grfffrw0nx5iiimj7jm00mwc2p4x8v3gvd1qr"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ base containers data-default directory filepath microlens - microlens-mtl microlens-th mtl pandoc pandoc-types syb - template-haskell text utility-ht + microlens-ghc microlens-mtl microlens-th mtl pandoc pandoc-types + syb template-haskell text utility-ht ]; executableHaskellDepends = [ base deepseq gitrev open-browser optparse-applicative pandoc @@ -217399,8 +218043,8 @@ self: { ({ mkDerivation, base, mtl, pandoc-types, text }: mkDerivation { pname = "pandoc-sidenote"; - version = "0.22.1.0"; - sha256 = "1ci30gav385ygcvqs2x3w7lp8y1m7myf9jci3idxrd4w7csdg7f3"; + version = "0.23.0.0"; + sha256 = "0bgcgsbwzbb0wqjrlj8vjj00w3ny4qhfr8v9yrc2dmmyyyfcl8i7"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base mtl pandoc-types text ]; @@ -217430,30 +218074,32 @@ self: { "pandoc-symreg" = callPackage ({ mkDerivation, attoparsec, attoparsec-expr, base, bytestring, mtl - , optparse-applicative, srtree + , optparse-applicative, srtree, srtree-eqsat }: mkDerivation { pname = "pandoc-symreg"; - version = "0.2.0.0"; - sha256 = "0ick0m8iz85hvvy4kfpqnghj2dx30qx12q546xaj7b0lqj4gf4mw"; + version = "0.2.1.1"; + sha256 = "1qzz3xc77ak6fvxvdanq1iy9nz2brwlixmjqlbwcjx0568qqcy7l"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ attoparsec attoparsec-expr base bytestring mtl optparse-applicative - srtree + srtree srtree-eqsat ]; executableHaskellDepends = [ attoparsec attoparsec-expr base bytestring mtl optparse-applicative - srtree + srtree srtree-eqsat ]; testHaskellDepends = [ attoparsec attoparsec-expr base bytestring mtl optparse-applicative - srtree + srtree srtree-eqsat ]; description = "A tool to convert symbolic regression expressions into different formats"; license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; mainProgram = "pandoc-symreg"; - }) {}; + broken = true; + }) {srtree-eqsat = null;}; "pandoc-throw" = callPackage ({ mkDerivation, base, exceptions, pandoc }: @@ -217638,8 +218284,8 @@ self: { }: mkDerivation { pname = "pango"; - version = "0.13.8.2"; - sha256 = "1mndcb904vlkqpbmj5np9lxqw2qw3pzawvrgbsbxa9xjayh0ylw5"; + version = "0.13.10.0"; + sha256 = "0qdk18vj07qivyyd0limjprni77q2xvydx748lsxsrw2ws8hb1ax"; enableSeparateDataOutput = true; setupHaskellDepends = [ base Cabal filepath gtk2hs-buildtools ]; libraryHaskellDepends = [ @@ -219932,8 +220578,8 @@ self: { }: mkDerivation { pname = "patch"; - version = "0.0.8.1"; - sha256 = "06hdh1x5lilz1w4gakixwf9r0x4x13a2cijgim8zjf7lq5irlmw5"; + version = "0.0.8.2"; + sha256 = "15r2sjlpvp22iwd7qa1lqdq7n8nvqv2klvzrlm3phqq3j5n5x5y5"; libraryHaskellDepends = [ base commutative-semigroups constraints-extras containers dependent-map dependent-sum indexed-traversable lens @@ -223622,6 +224268,34 @@ self: { license = lib.licenses.mit; }) {}; + "phatsort_0_6_0_0" = callPackage + ({ mkDerivation, ansi-wl-pprint, base, directory, filepath, HMock + , MonadRandom, optparse-applicative, random-shuffle, tasty + , tasty-hunit, transformers, unix-compat + }: + mkDerivation { + pname = "phatsort"; + version = "0.6.0.0"; + sha256 = "1cjmamla9383fk9715jxzlw87qnd26hpkcqhk4vvgld51nraf2pl"; + revision = "1"; + editedCabalFile = "0ivqjrahwjg6bl6k2nwb58avvyz7643js3zprabla1znlss36alv"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base directory filepath MonadRandom random-shuffle transformers + unix-compat + ]; + executableHaskellDepends = [ + ansi-wl-pprint base optparse-applicative + ]; + testHaskellDepends = [ + base HMock MonadRandom tasty tasty-hunit transformers + ]; + description = "FAT filesystem sort utility"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "phizzle" = callPackage ({ mkDerivation, aeson, base, bytestring, network, network-uri , regex-pcre, text @@ -223654,15 +224328,21 @@ self: { "phladiprelio-general-simple" = callPackage ({ mkDerivation, base, cli-arguments, phladiprelio-general-shared - , phonetic-languages-phonetics-basics, rhythmic-sequences + , phonetic-languages-constraints-array + , phonetic-languages-permutations-array + , phonetic-languages-phonetics-basics + , phonetic-languages-simplified-base, rhythmic-sequences }: mkDerivation { pname = "phladiprelio-general-simple"; - version = "0.2.4.0"; - sha256 = "04wzlgn2wkyb6j9499mcqgji5r2xw777xm3pyd35qh3gbkz7k0yj"; + version = "0.4.1.0"; + sha256 = "12wz9rydy16glwwj621ai74grghj5qjc6pahj17wdw6ip99p89hb"; libraryHaskellDepends = [ base cli-arguments phladiprelio-general-shared - phonetic-languages-phonetics-basics rhythmic-sequences + phonetic-languages-constraints-array + phonetic-languages-permutations-array + phonetic-languages-phonetics-basics + phonetic-languages-simplified-base rhythmic-sequences ]; description = "A generalized functionality of PhLADiPreLiO for different languages that uses hash algorithms"; license = lib.licenses.mit; @@ -223698,17 +224378,23 @@ self: { "phladiprelio-ukrainian-simple" = callPackage ({ mkDerivation, base, cli-arguments, phladiprelio-ukrainian-shared + , phonetic-languages-constraints-array + , phonetic-languages-permutations-array + , phonetic-languages-simplified-base , phonetic-languages-ukrainian-array, rhythmic-sequences , ukrainian-phonetics-basic-array }: mkDerivation { pname = "phladiprelio-ukrainian-simple"; - version = "0.3.4.0"; - sha256 = "1h6bdy7g3fgm555g7vmqzaidhlfv2zpl4an8j5j69wl3g11l5k2g"; + version = "0.5.1.1"; + sha256 = "0swzv9zyixdbffxnszy92g8fdhcp5a177yi583mxix13m253xd32"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ base cli-arguments phladiprelio-ukrainian-shared + phonetic-languages-constraints-array + phonetic-languages-permutations-array + phonetic-languages-simplified-base phonetic-languages-ukrainian-array rhythmic-sequences ukrainian-phonetics-basic-array ]; @@ -223880,8 +224566,8 @@ self: { ({ mkDerivation, base, subG }: mkDerivation { pname = "phonetic-languages-constraints-array"; - version = "0.2.0.0"; - sha256 = "1pqdraxiw35kvpiivbi26pj81wakib8bzi62n2547rvj55dh5j3z"; + version = "0.6.2.0"; + sha256 = "0b5w7va3b77fld9sij4jpb378bmqp7l918cxw0yh514lbkyawzgk"; libraryHaskellDepends = [ base subG ]; description = "Constraints to filter the needed permutations"; license = lib.licenses.mit; @@ -225242,7 +225928,7 @@ self: { ]; description = "Compositional pipelines"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "pipes-aeson" = callPackage @@ -225432,7 +226118,7 @@ self: { ]; description = "ByteString support for pipes"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "pipes-bzip" = callPackage @@ -225602,7 +226288,7 @@ self: { testHaskellDepends = [ async base pipes stm ]; description = "Concurrency for the pipes ecosystem"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "pipes-conduit" = callPackage @@ -225665,7 +226351,7 @@ self: { ]; description = "Fast, streaming csv parser"; license = lib.licenses.mit; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "pipes-errors" = callPackage @@ -225725,7 +226411,7 @@ self: { ]; description = "Extra utilities for pipes"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "pipes-fastx" = callPackage @@ -225810,7 +226496,7 @@ self: { testHaskellDepends = [ base doctest lens-family-core ]; description = "Group streams into substreams"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "pipes-http" = callPackage @@ -225828,7 +226514,7 @@ self: { ]; description = "HTTP client with pipes interface"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "pipes-illumina" = callPackage @@ -226099,7 +226785,7 @@ self: { libraryHaskellDepends = [ base pipes transformers ]; description = "Parsing infrastructure for the pipes ecosystem"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "pipes-postgresql-simple" = callPackage @@ -226226,7 +226912,7 @@ self: { ]; description = "Safety for the pipes ecosystem"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "pipes-shell" = callPackage @@ -228250,6 +228936,33 @@ self: { broken = true; }) {}; + "polyglot" = callPackage + ({ mkDerivation, base, bookhound, bytestring, casing, containers + , directory, directory-tree, extra, filepath, fsnotify + , optparse-applicative, parallel, text, utility-ht + }: + mkDerivation { + pname = "polyglot"; + version = "0.1.1.0"; + sha256 = "08sgpn5fb6f5mhr02lbzj4kbyaxv1dyqkv7nynm7fv0ajinb07hq"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bookhound bytestring casing containers directory + directory-tree extra filepath fsnotify optparse-applicative + parallel text utility-ht + ]; + executableHaskellDepends = [ + base bookhound bytestring casing containers directory + directory-tree extra filepath fsnotify optparse-applicative + parallel text utility-ht + ]; + description = "Haskell to Purescript & Scala 3 transpiler"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + mainProgram = "polyglot"; + }) {}; + "polymap" = callPackage ({ mkDerivation, base, containers }: mkDerivation { @@ -230077,14 +230790,16 @@ self: { }) {}; "posit" = callPackage - ({ mkDerivation, base, data-dword, deepseq, scientific, vector - , weigh + ({ mkDerivation, base, data-dword, deepseq, random, scientific + , vector, weigh }: mkDerivation { pname = "posit"; - version = "2022.0.0.0"; - sha256 = "09kviw9pv4b6mn0h3m7i104svfh87mv8ix0xrk5h6ddnaya2cw2n"; - libraryHaskellDepends = [ base data-dword deepseq scientific ]; + version = "2022.0.1.0"; + sha256 = "0gqrc0gq9d9wb94r8nm81b2yzmnvivqc8ppni59a1k1v95m3lb6c"; + libraryHaskellDepends = [ + base data-dword deepseq random scientific + ]; testHaskellDepends = [ base ]; benchmarkHaskellDepends = [ base vector weigh ]; description = "Posit Numbers"; @@ -230634,21 +231349,22 @@ self: { }) {}; "postgresql-migration" = callPackage - ({ mkDerivation, base, base64-bytestring, bytestring, cryptohash - , directory, filepath, hspec, postgresql-simple, text, time + ({ mkDerivation, base, base64-bytestring, bytestring + , cryptohash-md5, directory, filepath, hspec, postgresql-simple + , text, time }: mkDerivation { pname = "postgresql-migration"; - version = "0.2.1.6"; - sha256 = "0zx6pa9s8k3gq1sgn8pj9xwdlj0wlx49d1mxgmd9s2zk9flfzybf"; + version = "0.2.1.7"; + sha256 = "0r8pmy9905549vavbmps4627d2a5agz7hq0wv9663xdibvqsaf78"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base base64-bytestring bytestring cryptohash directory filepath + base base64-bytestring bytestring cryptohash-md5 directory filepath postgresql-simple text time ]; executableHaskellDepends = [ - base base64-bytestring bytestring cryptohash directory + base base64-bytestring bytestring cryptohash-md5 directory postgresql-simple text time ]; testHaskellDepends = [ base bytestring hspec postgresql-simple ]; @@ -232706,6 +233422,8 @@ self: { pname = "pretty-html"; version = "0.1.0.1"; sha256 = "14f2jydcjxnm9whxi2irvsx769xc4041dpvn3r7iahcn5gqf3krr"; + revision = "1"; + editedCabalFile = "095b0401vsv2kngazzq0hkmlcwll9m5hz6wkqb6n3zlk9xjyqgp3"; enableSeparateDataOutput = true; libraryHaskellDepends = [ base text ]; testHaskellDepends = [ base bytestring filepath text ]; @@ -233070,6 +233788,8 @@ self: { pname = "prettyprinter-interp"; version = "0.2.0.0"; sha256 = "0ml068y49n0s6p0nq0qfv5dmpkpkbd9p06hkj582yn2a1h32x0ff"; + revision = "1"; + editedCabalFile = "0p820l7raf812kr66sk63fwg9y9r0wmwm70cg6mvqb4hzdcycwkh"; libraryHaskellDepends = [ base prettyprinter string-interpolate template-haskell text ]; @@ -235156,8 +235876,8 @@ self: { }: mkDerivation { pname = "prometheus-proc"; - version = "0.1.4.0"; - sha256 = "0sicn1c51ks1c535nbgrqrgfqvzb8c5pmpnf2dx9a1xvjq2m54ny"; + version = "0.1.5.0"; + sha256 = "0kk96ph9xrr9gqd83rbmgsy6dpx05gg9jz145iv90d225rqb23qf"; libraryHaskellDepends = [ base directory filepath prometheus-client regex-applicative text unix unix-memory @@ -235331,8 +236051,8 @@ self: { }: mkDerivation { pname = "propellor"; - version = "5.15"; - sha256 = "0106ayiadnam0mz1836la0fya4s82cv591r3vc6cdyafzpjzjphk"; + version = "5.16"; + sha256 = "12ywc4riq4wr1ylm4gqp4fcszssfz1a6n1xa5da0mwxydklmw6l1"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -237126,8 +237846,8 @@ self: { }: mkDerivation { pname = "purebred-email"; - version = "0.6"; - sha256 = "0i89jyzy04fsrkfsqasrszhhax3hhmms7ih31sypn67w3awkk985"; + version = "0.6.0.1"; + sha256 = "0gdzdbxgsyps8hqd903bsyja0cr6kbklkicvma62q48wv0y7230j"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -238967,7 +239687,7 @@ self: { "quic" = callPackage ({ mkDerivation, array, async, base, base16-bytestring, bytestring - , containers, crypto-token, cryptonite, data-default-class, doctest + , containers, crypto-token, cryptonite, data-default-class , fast-logger, filepath, hspec, hspec-discover, iproute, memory , network, network-byte-order, network-udp, psqueues, QuickCheck , random, stm, tls, unix-time, unliftio, unliftio-core, x509 @@ -238975,8 +239695,8 @@ self: { }: mkDerivation { pname = "quic"; - version = "0.1.0"; - sha256 = "0yv12241waj9ab4q7n1blnsv8h8rrbs7wk5xirz0p58zf6kkkbk5"; + version = "0.1.1"; + sha256 = "02slgbrz3n6ga335sya6625xvsn6i1k8wnw6avipc48q6fmwzw29"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -238986,8 +239706,8 @@ self: { unix-time unliftio unliftio-core x509 x509-system ]; testHaskellDepends = [ - async base base16-bytestring bytestring containers cryptonite - doctest hspec network network-udp QuickCheck tls unix-time unliftio + async base base16-bytestring bytestring containers cryptonite hspec + network network-udp QuickCheck tls unix-time unliftio ]; testToolDepends = [ hspec-discover ]; description = "QUIC"; @@ -242600,8 +243320,8 @@ self: { }: mkDerivation { pname = "reactive-banana-automation"; - version = "0.5.5"; - sha256 = "13vpmyn68ad1g9885aj6dvgyn07f5blr91k4c3gf77ymlwj1a1zn"; + version = "0.5.6"; + sha256 = "161blkyhkff3z0blbrmrwmclhac481njn9ikb3x4ax0yfa1lpsvq"; libraryHaskellDepends = [ base reactive-banana stm time transformers ]; @@ -243854,6 +244574,31 @@ self: { pname = "redact"; version = "0.4.0.0"; sha256 = "0q0sqsqajv8mvz76b9xy40z22j6cbacwn76rwhns5wwj5kwli829"; + revision = "1"; + editedCabalFile = "0gdvbz483f8sbl1f1iqcm7n5srk09dxz401dpzjc59gyzg0j3a7s"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ ansi-terminal base text ]; + executableHaskellDepends = [ + ansi-terminal ansi-wl-pprint base directory optparse-applicative + ]; + testHaskellDepends = [ + ansi-terminal base explainable-predicates HMock tasty tasty-hunit + ]; + description = "hide secret text on the terminal"; + license = lib.licenses.mit; + mainProgram = "redact"; + }) {}; + + "redact_0_5_0_0" = callPackage + ({ mkDerivation, ansi-terminal, ansi-wl-pprint, base, directory + , explainable-predicates, HMock, optparse-applicative, tasty + , tasty-hunit, text + }: + mkDerivation { + pname = "redact"; + version = "0.5.0.0"; + sha256 = "0f9nfkli9spbcidfwq81z4ryjnlyqf4snj1dmhsngpcp0x2am798"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ ansi-terminal base text ]; @@ -243865,6 +244610,7 @@ self: { ]; description = "hide secret text on the terminal"; license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; mainProgram = "redact"; }) {}; @@ -244515,7 +245261,7 @@ self: { license = lib.licenses.bsd3; }) {}; - "reflex_0_9_0_0" = callPackage + "reflex_0_9_0_1" = callPackage ({ mkDerivation, base, bifunctors, commutative-semigroups, comonad , constraints, constraints-extras, containers, criterion , data-default, deepseq, dependent-map, dependent-sum, directory @@ -244529,8 +245275,8 @@ self: { }: mkDerivation { pname = "reflex"; - version = "0.9.0.0"; - sha256 = "0g22b2bkv6l2m7aiz7kqi3x572qhzy0hikvpysrq2jffl02by0lm"; + version = "0.9.0.1"; + sha256 = "1r7mjpg73clp1jqxpakvmiah55kbm6q54kcy9y84abn20wy98swi"; libraryHaskellDepends = [ base bifunctors commutative-semigroups comonad constraints constraints-extras containers data-default dependent-map @@ -244649,8 +245395,8 @@ self: { pname = "reflex-dom"; version = "0.6.1.1"; sha256 = "0ykkzmzxiznd09sgmjwzmbrpnm8gr2bd57hzdl8avrr728bwj8ga"; - revision = "1"; - editedCabalFile = "0g9ch18sibdz6mqkfkh1dh86hf7vp3bjr8hyq2dqk33vn1lkrlrp"; + revision = "2"; + editedCabalFile = "0jcsl5miv1wz385kln4ap079sp54dcnc37f3kb93m5a52dwbjx4p"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -244735,8 +245481,8 @@ self: { }: mkDerivation { pname = "reflex-dom-core"; - version = "0.7.0.2"; - sha256 = "1piwllxvq2fkfrfrvmnpz802vrwa9izhg8irlk19nmxy02rcx9ra"; + version = "0.8.0.0"; + sha256 = "17zj8a7wmbf4019gb6m9bb4nybbqmbc11qydc8l9h9p3kavhbd0j"; libraryHaskellDepends = [ aeson base bifunctors bimap blaze-builder bytestring case-insensitive commutative-semigroups constraints containers @@ -244932,10 +245678,8 @@ self: { }: mkDerivation { pname = "reflex-fsnotify"; - version = "0.2.1.2"; - sha256 = "1g5zm12ypqr0agrgmbyglhh5f9p933hba2dismbyywsgdmn1i9bl"; - revision = "1"; - editedCabalFile = "1hpi0wnvif72n3mfnrypa3psl82wfw60l36cn2j8fdp7lrvzxa88"; + version = "0.3.0.0"; + sha256 = "1i0rb5s0qsxv7mlfy9jsaz7qr3s8i0dy540qxx4srzi48sg1xc0j"; libraryHaskellDepends = [ base containers directory filepath fsnotify reflex ]; @@ -245210,6 +245954,8 @@ self: { pname = "reflex-process"; version = "0.3.1.2"; sha256 = "0casszkah49b6n36ymh5ffyhbz1161z5vrlpwisn1r1wb68idm3j"; + revision = "2"; + editedCabalFile = "1vkdpi6yapgy6xksdwqkz926hjjbd9v07q9p7fx0nnbjg6yxg437"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -245297,8 +246043,8 @@ self: { }: mkDerivation { pname = "reflex-vty"; - version = "0.4.1.0"; - sha256 = "1jh56c0gh2gzyyh13qx0qpmci8szacd70qjnyla1gjjabvrgzlg2"; + version = "0.4.1.1"; + sha256 = "0s9f5v6nnm9g058rlq5k2x5ak8hpgxsmc9l3hcbvgm9l0979mr74"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -245934,8 +246680,8 @@ self: { }: mkDerivation { pname = "regex-tdfa"; - version = "1.3.2"; - sha256 = "1lfzhir5zbgga44zhr4qvc2xc9pa9lslv12c8lwqqw80bzfdfq16"; + version = "1.3.2.1"; + sha256 = "15c2gc7c0y2xv9sm586jvys2kx1dc18lzfvjzad5mm2d4yszi2sw"; libraryHaskellDepends = [ array base bytestring containers mtl parsec regex-base text ]; @@ -247855,6 +248601,23 @@ self: { license = lib.licenses.bsd2; }) {}; + "replace-attoparsec_1_5_0_0" = callPackage + ({ mkDerivation, attoparsec, base, bytestring, hspec, HUnit + , parsers, text + }: + mkDerivation { + pname = "replace-attoparsec"; + version = "1.5.0.0"; + sha256 = "1pv24qlng92ywy6xpprvn3yzcndngww4ki6nih4vpd4hzsp534zl"; + libraryHaskellDepends = [ attoparsec base bytestring text ]; + testHaskellDepends = [ + attoparsec base bytestring hspec HUnit parsers text + ]; + description = "Find, replace, split string patterns with Attoparsec parsers (instead of regex)"; + license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + }) {}; + "replace-megaparsec" = callPackage ({ mkDerivation, base, bytestring, Cabal, megaparsec , parser-combinators, text @@ -247872,6 +248635,24 @@ self: { maintainers = [ lib.maintainers.maralorn ]; }) {}; + "replace-megaparsec_1_5_0_1" = callPackage + ({ mkDerivation, base, bytestring, hspec, megaparsec + , parser-combinators, text + }: + mkDerivation { + pname = "replace-megaparsec"; + version = "1.5.0.1"; + sha256 = "134ns97fhsg0a0jn5pjfnbv9jj40p0ljinx7y572gaw0lpfwc4x1"; + libraryHaskellDepends = [ + base bytestring megaparsec parser-combinators text + ]; + testHaskellDepends = [ base bytestring hspec megaparsec text ]; + description = "Find, replace, split string patterns with Megaparsec parsers (instead of regex)"; + license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + maintainers = [ lib.maintainers.maralorn ]; + }) {}; + "replica" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, Diff , file-embed, http-types, QuickCheck, quickcheck-instances @@ -248562,6 +249343,17 @@ self: { broken = true; }) {}; + "resource-effectful" = callPackage + ({ mkDerivation, base, effectful-core, stm }: + mkDerivation { + pname = "resource-effectful"; + version = "0.1.0.0"; + sha256 = "13f80fycm3000rwbcqb47n6m3jr4z3r7l6dw1ra8nvbbzb7n1q97"; + libraryHaskellDepends = [ base effectful-core stm ]; + description = "A region-based resource effect for the effectful ecosystem"; + license = lib.licenses.bsd3; + }) {}; + "resource-embed" = callPackage ({ mkDerivation, base, bytestring, directory }: mkDerivation { @@ -253067,8 +253859,8 @@ self: { ({ mkDerivation, array, base, bifunctors, mtl, template-haskell }: mkDerivation { pname = "rzk"; - version = "0.3.0"; - sha256 = "0vbkk0xf7cwynb7w7793byhh40jif3343r3h06h5bm6jz1yf4qxv"; + version = "0.4.0"; + sha256 = "0525bzxsb7ckfmbm3jhd4zvds0r1pag6i4lyvmc293fskj0g4zqj"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -254643,18 +255435,19 @@ self: { ({ mkDerivation, aeson, alex, array, base, bytestring, containers , deepseq, lattices, QuickCheck, tasty, tasty-bench, tasty-hunit , tasty-quickcheck, template-haskell, text, th-letrec, wide-word + , word8set }: mkDerivation { pname = "sasha"; - version = "0"; - sha256 = "0c7wvrw5139d4n9vj5na7j3l4ayk5651w7qf962hd0cb1ah77518"; + version = "0.2"; + sha256 = "1z99hdbn94ngfinijgsd5x4lllwpyxc8jkf67lk0f6p12jfq7qv0"; libraryHaskellDepends = [ base bytestring containers lattices QuickCheck template-haskell - th-letrec wide-word + th-letrec wide-word word8set ]; testHaskellDepends = [ aeson array base bytestring deepseq lattices tasty tasty-bench - tasty-hunit tasty-quickcheck text + tasty-hunit tasty-quickcheck template-haskell text ]; testToolDepends = [ alex ]; description = "A staged lexer generator"; @@ -254971,7 +255764,7 @@ self: { license = lib.licenses.mit; }) {}; - "sbp_4_14_0" = callPackage + "sbp_4_15_0" = callPackage ({ mkDerivation, aeson, aeson-pretty, array, base , base64-bytestring, basic-prelude, binary, binary-conduit , bytestring, cmdargs, conduit, conduit-extra, data-binary-ieee754 @@ -254980,8 +255773,8 @@ self: { }: mkDerivation { pname = "sbp"; - version = "4.14.0"; - sha256 = "1ycz6yqab4l9idsr2ks5mwa9mnbvq9vsjyki4lnxaxqg83f8a0lm"; + version = "4.15.0"; + sha256 = "1x8gqrrds6ci2s33vrrmw5ndzj22k271zd0wsbvfqg7wpz8ry37f"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -261129,6 +261922,63 @@ self: { broken = true; }) {}; + "servant-queryparam-client" = callPackage + ({ mkDerivation, base, servant, servant-client-core + , servant-queryparam-core + }: + mkDerivation { + pname = "servant-queryparam-client"; + version = "2.0.0"; + sha256 = "02k52mjv1m8wvjgjkfqzdn8njf12nn027vff7pk9lihmba6k5giw"; + libraryHaskellDepends = [ + base servant servant-client-core servant-queryparam-core + ]; + description = "Client support for servant-queryparam-core"; + license = lib.licenses.bsd3; + }) {}; + + "servant-queryparam-core" = callPackage + ({ mkDerivation, base, first-class-families, servant }: + mkDerivation { + pname = "servant-queryparam-core"; + version = "2.0.1"; + sha256 = "0c4bg9icph25jj0543ljvl742k0g8dkfh0l0033nn4k3dhvqjqlp"; + libraryHaskellDepends = [ base first-class-families servant ]; + description = "Use records for query parameters in servant APIs"; + license = lib.licenses.bsd3; + }) {}; + + "servant-queryparam-openapi3" = callPackage + ({ mkDerivation, base, openapi3, servant, servant-openapi3 + , servant-queryparam-core + }: + mkDerivation { + pname = "servant-queryparam-openapi3"; + version = "2.0.0"; + sha256 = "16zzh6gzl9327n1k447cv31g49gdqyfs66sy16r5lqm8fgr42sy5"; + libraryHaskellDepends = [ + base openapi3 servant servant-openapi3 servant-queryparam-core + ]; + description = "Instances of classes from openapi3 for servant-queryparam-core"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + + "servant-queryparam-server" = callPackage + ({ mkDerivation, base, servant, servant-queryparam-core + , servant-server, text + }: + mkDerivation { + pname = "servant-queryparam-server"; + version = "2.0.0"; + sha256 = "0n0sxxl74vbpz5fy85my6sza0g88wyfkj7lp4a388nfg40b5ax0c"; + libraryHaskellDepends = [ + base servant servant-queryparam-core servant-server text + ]; + description = "Server support for servant-queryparam-core"; + license = lib.licenses.bsd3; + }) {}; + "servant-quickcheck" = callPackage ({ mkDerivation, aeson, base, base-compat-batteries, blaze-html , bytestring, case-insensitive, clock, data-default-class, hspec @@ -262287,7 +263137,7 @@ self: { description = "Auto-generate a server for your datatype"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; broken = true; }) {}; @@ -262995,8 +263845,8 @@ self: { }: mkDerivation { pname = "sexpresso"; - version = "1.2.2.0"; - sha256 = "1lzh70zx5lnjbz0h95icdl06lmcig8d093frk46fdydgzl3z9mgw"; + version = "1.2.3.0"; + sha256 = "0nbwyv0zxcgd2jsng0qn84mnc3x9dc31cq43cacj3mijiss2s57p"; libraryHaskellDepends = [ base bifunctors containers megaparsec recursion-schemes text ]; @@ -265835,6 +266685,25 @@ self: { broken = true; }) {}; + "simple-expr" = callPackage + ({ mkDerivation, base, data-fix, doctest, graphite, graphviz + , hashable, numhask, text, unicode-show + }: + mkDerivation { + pname = "simple-expr"; + version = "0.1.0.2"; + sha256 = "1blr20svc7w5gdjpzlldgwjpy452n4bgvz3sbbrpgrqlcj1vln5b"; + libraryHaskellDepends = [ + base data-fix graphite graphviz hashable numhask text unicode-show + ]; + testHaskellDepends = [ + base data-fix doctest graphite graphviz hashable numhask text + unicode-show + ]; + description = "Minimalistic toolkit for simple mathematical expression"; + license = lib.licenses.bsd3; + }) {}; + "simple-firewire" = callPackage ({ mkDerivation, base, bindings-dc1394, CV }: mkDerivation { @@ -266203,6 +267072,18 @@ self: { license = lib.licenses.bsd3; }) {}; + "simple-prompt_0_2_0_1" = callPackage + ({ mkDerivation, base, exceptions, extra, haskeline, time }: + mkDerivation { + pname = "simple-prompt"; + version = "0.2.0.1"; + sha256 = "1bmq1x7raibnlqkjay3gnvsqiiggv2n911vk02z1glly90b5yg21"; + libraryHaskellDepends = [ base exceptions extra haskeline time ]; + description = "Simple commandline text prompt functions"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "simple-reflect" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -268289,8 +269170,8 @@ self: { }: mkDerivation { pname = "slick"; - version = "1.2.0.0"; - sha256 = "1a1k723x0q9i43lvzagqar9fcaprni77r158la09kmmxzdmbzsl2"; + version = "1.2.1.0"; + sha256 = "1ba9z30lcxmsidzp9hzrglqn91wy2phil4sjd3qbvx393zllzn5s"; libraryHaskellDepends = [ aeson base bytestring directory extra mustache pandoc shake text unordered-containers @@ -271537,6 +272418,8 @@ self: { pname = "solana-staking-csvs"; version = "0.1.2.0"; sha256 = "03y8p5yf0gqv0lrmijqz0p302cf1qxhc6wyxzmfbgxvy22gfs3a1"; + revision = "1"; + editedCabalFile = "0blw47d4sy9g2yldzv7373g1xzc29knpbxys9bipw4kslmvq24zz"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -271927,8 +272810,8 @@ self: { pname = "sound-collage"; version = "0.2.1"; sha256 = "09g63b3k0l30z3lxmcz0zpggqqhnr7m01wh2vpm5v561rbnl8rsi"; - revision = "1"; - editedCabalFile = "07zs924gils8nsb5b8q6lmh4g6iln6dkj3qic8p8cpwkrazjfwsx"; + revision = "2"; + editedCabalFile = "0csr699dvsvyf90rcks43naiy5biv1awqj0ah4y8vnkyz261n8l5"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -274295,25 +275178,21 @@ self: { }) {}; "srtree" = callPackage - ({ mkDerivation, ad, base, containers, criterion, HUnit, mtl - , random, vector + ({ mkDerivation, ad, base, containers, dlist, HUnit, mtl, random + , vector }: mkDerivation { pname = "srtree"; - version = "1.0.0.1"; - sha256 = "169x9hdw73qpcfkzicm1f5vq19zm7nbpgcckhvpvk1qjrywcv6gc"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base containers mtl random vector ]; - executableHaskellDepends = [ - ad base containers criterion mtl random vector + version = "1.0.0.4"; + sha256 = "0i1fflmqvm9hl1cxm4hddjfz1dyxd5nq2pmwmj467wbyjmmrpksv"; + libraryHaskellDepends = [ + base containers dlist mtl random vector ]; testHaskellDepends = [ - ad base containers HUnit mtl random vector + ad base containers dlist HUnit mtl random vector ]; description = "A general framework to work with Symbolic Regression expression trees"; license = lib.licenses.bsd3; - mainProgram = "bench-srtree"; }) {}; "srv" = callPackage @@ -274674,8 +275553,8 @@ self: { pname = "stache"; version = "2.3.3"; sha256 = "1naqj54qm59f04x310lvj4fsrp3xar1v643i79gp7h48kyn1c2vy"; - revision = "2"; - editedCabalFile = "0bzamvkkxn2vrag7rb72n3i7sqvjr3rpyp172krp4ak1ydqlsyi7"; + revision = "3"; + editedCabalFile = "0flizmaig3crrwfl88wxchw0g67r299hal70p2qrxnl36c84yd63"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -274797,7 +275676,7 @@ self: { maintainers = [ lib.maintainers.cdepillabout ]; }) {}; - "stack_2_9_3" = callPackage + "stack_2_11_1" = callPackage ({ mkDerivation, aeson, annotated-wl-pprint, ansi-terminal, array , async, attoparsec, base, base64-bytestring, bytestring, Cabal , casa-client, casa-types, colour, conduit, conduit-extra @@ -274812,17 +275691,14 @@ self: { , pretty, primitive, process, project-template, QuickCheck, random , raw-strings-qq, retry, rio, rio-prettyprint, semigroups , smallcheck, split, stm, streaming-commons, tar, template-haskell - , temporary, text, text-metrics, th-reify-many, time, tls - , transformers, typed-process, unicode-transforms, unix - , unix-compat, unliftio, unordered-containers, vector, yaml - , zip-archive, zlib + , text, text-metrics, th-reify-many, time, tls, transformers + , typed-process, unicode-transforms, unix, unix-compat, unliftio + , unordered-containers, vector, yaml, zip-archive, zlib }: mkDerivation { pname = "stack"; - version = "2.9.3"; - sha256 = "1p7j05cm9y3vbj5wkcjsia65agfzyd2r8r1fvd4l4qnx4yr0qw64"; - revision = "1"; - editedCabalFile = "0klhligq0xh5vkcah66ws2i129gjz9miz4y3gvl9raa0ff5b44s8"; + version = "2.11.1"; + sha256 = "0qihckfj5p9xbq0d8xd9c7zy5jpdl2hrvcc0nq8x67k9a7vqwwx1"; configureFlags = [ "-fdisable-git-info" "-fhide-dependency-versions" "-fsupported-build" @@ -274842,8 +275718,8 @@ self: { optparse-applicative pantry path path-io persistent persistent-sqlite persistent-template pretty primitive process project-template random retry rio rio-prettyprint semigroups split - stm streaming-commons tar template-haskell temporary text - text-metrics th-reify-many time tls transformers typed-process + stm streaming-commons tar template-haskell text text-metrics + th-reify-many time tls transformers typed-process unicode-transforms unix unix-compat unliftio unordered-containers vector yaml zip-archive zlib ]; @@ -274859,8 +275735,8 @@ self: { optparse-applicative pantry path path-io persistent persistent-sqlite persistent-template pretty primitive process project-template random retry rio rio-prettyprint semigroups split - stm streaming-commons tar template-haskell temporary text - text-metrics th-reify-many time tls transformers typed-process + stm streaming-commons tar template-haskell text text-metrics + th-reify-many time tls transformers typed-process unicode-transforms unix unix-compat unliftio unordered-containers vector yaml zip-archive zlib ]; @@ -274877,8 +275753,8 @@ self: { persistent-sqlite persistent-template pretty primitive process project-template QuickCheck random raw-strings-qq retry rio rio-prettyprint semigroups smallcheck split stm streaming-commons - tar template-haskell temporary text text-metrics th-reify-many time - tls transformers typed-process unicode-transforms unix unix-compat + tar template-haskell text text-metrics th-reify-many time tls + transformers typed-process unicode-transforms unix unix-compat unliftio unordered-containers vector yaml zip-archive zlib ]; testToolDepends = [ hspec-discover ]; @@ -275159,20 +276035,6 @@ self: { ({ mkDerivation, base, bytestring, directory, filepath }: mkDerivation { pname = "stack-templatizer"; - version = "0.1.0.2"; - sha256 = "0wz9xa3zs2c6706p3zydkz5rl8076hqak10mi4ianmfidp2v446w"; - isLibrary = false; - isExecutable = true; - executableHaskellDepends = [ base bytestring directory filepath ]; - description = "Generate a stack template from a folder"; - license = lib.licenses.bsd3; - mainProgram = "stack-templatizer"; - }) {}; - - "stack-templatizer_0_1_1_0" = callPackage - ({ mkDerivation, base, bytestring, directory, filepath }: - mkDerivation { - pname = "stack-templatizer"; version = "0.1.1.0"; sha256 = "0m8mxr1ainzfv5pryb9xrmamzjpilfnjfpr0c0ra78vw4zhjzz63"; isLibrary = false; @@ -275180,7 +276042,6 @@ self: { executableHaskellDepends = [ base bytestring directory filepath ]; description = "Generate a stack template from a folder"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; mainProgram = "stack-templatizer"; }) {}; @@ -275698,26 +276559,27 @@ self: { "stackctl" = callPackage ({ mkDerivation, aeson, aeson-casing, aeson-pretty, amazonka , amazonka-cloudformation, amazonka-core, amazonka-ec2 - , amazonka-lambda, amazonka-sts, base, Blammo, bytestring, cfn-flip - , conduit, containers, envparse, errors, exceptions, extra - , filepath, Glob, hspec, lens, lens-aeson, monad-logger, mtl - , optparse-applicative, QuickCheck, resourcet, rio, semigroups - , text, time, transformers, unliftio, unliftio-core - , unordered-containers, uuid, yaml + , amazonka-lambda, amazonka-sso, amazonka-sts, base, Blammo + , bytestring, cfn-flip, conduit, containers, envparse, errors + , exceptions, extra, filepath, Glob, hspec, lens, lens-aeson + , monad-logger, mtl, optparse-applicative, QuickCheck, resourcet + , rio, semigroups, text, time, transformers, typed-process + , unliftio, unliftio-core, unordered-containers, uuid, yaml }: mkDerivation { pname = "stackctl"; - version = "1.4.0.1"; - sha256 = "01lm870d7xji00kk15r025hxpwldqc2l03xj09bclix75yq6fsvw"; + version = "1.4.2.1"; + sha256 = "1amvvw7za305rqz3cm9svqb4r0x6h096yw6p8w3wims1vq831a99"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson aeson-casing aeson-pretty amazonka amazonka-cloudformation - amazonka-core amazonka-ec2 amazonka-lambda amazonka-sts base Blammo - bytestring cfn-flip conduit containers envparse errors exceptions - extra filepath Glob lens lens-aeson monad-logger mtl - optparse-applicative QuickCheck resourcet rio semigroups text time - transformers unliftio unliftio-core unordered-containers uuid yaml + amazonka-core amazonka-ec2 amazonka-lambda amazonka-sso + amazonka-sts base Blammo bytestring cfn-flip conduit containers + envparse errors exceptions extra filepath Glob lens lens-aeson + monad-logger mtl optparse-applicative QuickCheck resourcet rio + semigroups text time transformers typed-process unliftio + unliftio-core unordered-containers uuid yaml ]; executableHaskellDepends = [ base ]; testHaskellDepends = [ @@ -275726,7 +276588,8 @@ self: { license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; mainProgram = "stackctl"; - }) {}; + broken = true; + }) {amazonka-sso = null;}; "stacked-dag" = callPackage ({ mkDerivation, base, containers, doctest, graphviz @@ -276096,6 +276959,8 @@ self: { pname = "statestack"; version = "0.3.1.1"; sha256 = "1747qzaj3xqc90fj4ddch3ra5kj52rfd1dn7a8c6fkdk68q76mfd"; + revision = "1"; + editedCabalFile = "0rxndmrq4gj1bc9cf20477n8d6kpri31dyl6x8f4h57yiwhblg55"; libraryHaskellDepends = [ base mtl transformers ]; description = "Simple State-like monad transformer with saveable and restorable state"; license = lib.licenses.bsd3; @@ -276195,6 +277060,41 @@ self: { license = lib.licenses.bsd3; }) {}; + "static-ls" = callPackage + ({ mkDerivation, array, base, containers, directory, errors, extra + , filepath, ghc, ghc-paths, ghcide, hiedb, hspec, hspec-discover + , lsp, lsp-types, mtl, sqlite-simple, template-haskell, text + , transformers, unliftio-core + }: + mkDerivation { + pname = "static-ls"; + version = "0.1.0"; + sha256 = "1bxhz8lbfhysjlcc4g9q7b7ijxgr1h52n5gx4fc0iznqrmnkkwn7"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + array base containers directory errors extra filepath ghc ghc-paths + ghcide hiedb lsp lsp-types mtl sqlite-simple template-haskell text + transformers unliftio-core + ]; + executableHaskellDepends = [ + array base containers directory errors extra filepath ghc ghc-paths + ghcide hiedb lsp lsp-types mtl sqlite-simple template-haskell text + transformers unliftio-core + ]; + testHaskellDepends = [ + array base containers directory errors extra filepath ghc ghc-paths + ghcide hiedb hspec lsp lsp-types mtl sqlite-simple template-haskell + text transformers unliftio-core + ]; + testToolDepends = [ hspec-discover ]; + description = "See README on Github for more information"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "static-ls"; + broken = true; + }) {}; + "static-resources" = callPackage ({ mkDerivation, base, directory, filepath, hslogger, HUnit , MissingH, mtl, old-time, process, syb, test-framework @@ -278156,8 +279056,8 @@ self: { }: mkDerivation { pname = "streaming-conduit"; - version = "0.1.2.2"; - sha256 = "0g2x8a6gksc1na3qn1fnd9c7cckn4r54x11x4rxnmy2v04sv0h8z"; + version = "0.1.3.0"; + sha256 = "1f19d6qmx9kpg4mynqzrnz3hry3f2sxmwqmj69y8fyrp30rgrpam"; libraryHaskellDepends = [ base bytestring conduit streaming streaming-bytestring transformers ]; @@ -278418,8 +279318,8 @@ self: { }: mkDerivation { pname = "streaming-utils"; - version = "0.2.3.0"; - sha256 = "1hap8vv78ij2pvn001rdmqqnm0whqpm8fca482z9bw1x2gywwzry"; + version = "0.2.4.0"; + sha256 = "108z34mcnp6qcrqx1lblnw5p1qnynvrfrxik6n3ff71iqbg7lllh"; libraryHaskellDepends = [ aeson attoparsec base bytestring http-client http-client-tls json-stream mtl network network-simple pipes resourcet streaming @@ -279154,8 +280054,8 @@ self: { ({ mkDerivation, array, base, io-classes, stm }: mkDerivation { pname = "strict-stm"; - version = "1.1.0.0"; - sha256 = "15yq90fa5i0v3mgrb7yhc6c753ypzpw08lh0ramx38kpv7l1gxvx"; + version = "1.1.0.1"; + sha256 = "01lw137aarcwbr5vgrkjrfh1kp9bn7ql31xw9ivw9nwfdhjblz04"; libraryHaskellDepends = [ array base io-classes stm ]; description = "Strict STM interface polymorphic over stm implementation"; license = lib.licenses.asl20; @@ -280496,8 +281396,8 @@ self: { }: mkDerivation { pname = "stylist"; - version = "2.6.0.0"; - sha256 = "15w3fxhjfywr516pys9sy56x9zllv9w4hqab3qqhr4dvbb1qma4p"; + version = "2.7.0.0"; + sha256 = "0a8d6cqn8k4q836lywp7j63s1sprfi059n35f13b4ym9834y5rxi"; libraryHaskellDepends = [ async base css-syntax file-embed hashable network-uri regex-tdfa stylist-traits text unordered-containers @@ -280516,8 +281416,8 @@ self: { ({ mkDerivation, base, css-syntax, network-uri, text }: mkDerivation { pname = "stylist-traits"; - version = "0.1.2.0"; - sha256 = "0438yz2lhjdq5xdsvfllnyd8hpdyg6pw48v5mlskk31wfr3j3jsa"; + version = "0.1.3.1"; + sha256 = "0dw26liwvp490njpj1p8mjkanin1mmx68pd0br034ppaq3aacmnl"; libraryHaskellDepends = [ base css-syntax network-uri text ]; description = "Traits, datatypes, & parsers for Haskell Stylist"; license = lib.licenses.gpl3Only; @@ -281732,8 +282632,8 @@ self: { pname = "svg-builder"; version = "0.1.1"; sha256 = "1k420f497lzkymmxin88ql6ib8dziic43avykv31yq65rgrf7l2g"; - revision = "6"; - editedCabalFile = "1cprm8ya1rdid4pz1dk6692mv0kqkaxrsqaxg83bca5z4dkgqi2z"; + revision = "7"; + editedCabalFile = "0fjbparishw3b2gnh3i7b3d3vxf7mp8h17sfawkf2333smb9zl47"; libraryHaskellDepends = [ base blaze-builder bytestring hashable text unordered-containers ]; @@ -281762,8 +282662,8 @@ self: { ({ mkDerivation, base, blaze-markup, blaze-svg, directory, text }: mkDerivation { pname = "svg-icons"; - version = "2.9.2.1"; - sha256 = "0wk6v6yk0chr7h8d4kba85hhd38vayk67hv312hjg5rh71rc602y"; + version = "2.10.0"; + sha256 = "0r1xm2vn62crrhzn9kb64lz9d16ra9gj0qq208wmhz6906hz0kbf"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -286720,6 +287620,21 @@ self: { license = lib.licenses.bsd3; }) {}; + "tasty-program_1_1_0" = callPackage + ({ mkDerivation, base, deepseq, directory, filepath, process, tasty + }: + mkDerivation { + pname = "tasty-program"; + version = "1.1.0"; + sha256 = "1c0f8xmca9s18mdmmb5cwvp8d7s8qc55879d2h3p0fcnwf9rc3cn"; + libraryHaskellDepends = [ + base deepseq directory filepath process tasty + ]; + description = "Use tasty framework to test whether a program executes correctly"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "tasty-quickcheck" = callPackage ({ mkDerivation, base, optparse-applicative, pcre-light, QuickCheck , random, tagged, tasty, tasty-hunit @@ -288958,8 +289873,8 @@ self: { }: mkDerivation { pname = "terraform-http-backend-pass"; - version = "0.1.0.0"; - sha256 = "0cw9vzj5kigz84r2nwxmvva5fmn9r6y78g40icwi1yaby9g9s809"; + version = "0.1.0.1"; + sha256 = "0jxgp63b6bwa0402p03inj6sr0slm8ynhf0vin8nq346z7296aij"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -289071,8 +289986,8 @@ self: { pname = "test-framework"; version = "0.8.2.0"; sha256 = "1hhacrzam6b8f10hyldmjw8pb7frdxh04rfg3farxcxwbnhwgbpm"; - revision = "8"; - editedCabalFile = "1sal1qqvc8c1rvsqz292bniy1kr5rx6ll7z9chwsz6j2ncw5sgmg"; + revision = "9"; + editedCabalFile = "13qmj87p4nddbqlsdk03j5v7mj4bcxamzmdc5pzf585j9gara8yn"; libraryHaskellDepends = [ ansi-terminal ansi-wl-pprint base containers hostname old-locale random regex-posix time xml @@ -289917,10 +290832,8 @@ self: { ({ mkDerivation, base, text, text-builder }: mkDerivation { pname = "text-ansi"; - version = "0.2.1"; - sha256 = "1s0ad0nap9z0pzwl3nm2vglkz148qv120bngwy08bqb6vbs8w90p"; - revision = "1"; - editedCabalFile = "0yvl94zb6s6v3sla42qy44fnqs5p60in0ljyjwylyjkaiv63m70x"; + version = "0.2.1.1"; + sha256 = "1lcpcyi16qly7pdb41ixm0qcdi2lq1z7cv0v1gfwryvp7d0sjgar"; libraryHaskellDepends = [ base text text-builder ]; description = "Text styling for ANSI terminals"; license = lib.licenses.bsd3; @@ -290093,10 +291006,10 @@ self: { }: mkDerivation { pname = "text-display"; - version = "0.0.4.0"; - sha256 = "1k259cm6a8l7bzjv3qg77szwjkslnh2zy08wwf866yqsanwlfcdn"; + version = "0.0.5.0"; + sha256 = "03v9alzpmsb2mvpyvch77qg13cdb8iqwf6fv736dzjsb5wwvx7sh"; revision = "1"; - editedCabalFile = "181h85z49vkbirxxqh8ljh5byqz3kvbprcn8pss26bgmxhwbzp9y"; + editedCabalFile = "0jrzqgz1gicjssjw2sg8v8i70z77vnh1w4pj39470rlijrjmxx7p"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base bytestring text ]; @@ -291668,8 +292581,8 @@ self: { pname = "th-test-utils"; version = "1.2.1"; sha256 = "1vk5fj66w7smq4yc614ixh7s78n3djggpzcxmakyxfz01vz20gay"; - revision = "1"; - editedCabalFile = "0v8z6pzvbbxywafgmkhkrv5s3cskc1ilabwsbg1ga2hvimm4hgi9"; + revision = "2"; + editedCabalFile = "0sjxy0v6g567n0vs8myi3vx0hbhhmd8k3jgjwsmp7zrvhzbfyw91"; libraryHaskellDepends = [ base template-haskell th-orphans transformers ]; @@ -294204,25 +295117,26 @@ self: { }) {}; "tinytools" = callPackage - ({ mkDerivation, aeson, base, bimap, binary, bytestring - , constraints-extras, containers, data-default, data-ordlist - , deepseq, dependent-map, dependent-sum, dependent-sum-template - , extra, hashable, hspec, hspec-contrib, HUnit, ilist, lens, linear - , listsafe, MonadRandom, mtl, patch, pretty-simple, random-shuffle - , ref-tf, reflex, reflex-potatoes, reflex-test-host, relude - , semialign, template-haskell, text, text-icu, these, vector, vty + ({ mkDerivation, aeson, aeson-pretty, base, bimap, binary + , bytestring, constraints-extras, containers, data-default + , data-ordlist, deepseq, dependent-map, dependent-sum + , dependent-sum-template, extra, filepath, hashable, hspec + , hspec-contrib, HUnit, ilist, lens, linear, listsafe, MonadRandom + , mtl, patch, pretty-simple, random-shuffle, ref-tf, reflex + , reflex-potatoes, reflex-test-host, relude, semialign + , template-haskell, text, text-icu, these, vector, vty }: mkDerivation { pname = "tinytools"; - version = "0.1.0.0"; - sha256 = "0qjh4m9s5gq56ghnhi1arv3zh0181iiyq1023z5gj2dk9hk4vyvx"; + version = "0.1.0.3"; + sha256 = "18ww0f86ifhy8770vflcip6vcfdaz8r8rgzss83w21qr0q4cl8bm"; libraryHaskellDepends = [ - aeson base bimap binary bytestring constraints-extras containers - data-default data-ordlist deepseq dependent-map dependent-sum - dependent-sum-template extra hashable ilist lens linear listsafe - MonadRandom mtl patch pretty-simple random-shuffle ref-tf reflex - reflex-potatoes reflex-test-host relude semialign template-haskell - text text-icu these vector vty + aeson aeson-pretty base bimap binary bytestring constraints-extras + containers data-default data-ordlist deepseq dependent-map + dependent-sum dependent-sum-template extra filepath hashable ilist + lens linear listsafe MonadRandom mtl patch pretty-simple + random-shuffle ref-tf reflex reflex-potatoes reflex-test-host + relude semialign template-haskell text text-icu these vector vty ]; testHaskellDepends = [ aeson base bimap binary bytestring constraints-extras containers @@ -294247,8 +295161,8 @@ self: { }: mkDerivation { pname = "tinytools-vty"; - version = "0.1.0.1"; - sha256 = "0f8jl45wz4wjsyb33q28fsbsic7r4qs3g37060c9iagkydnad8za"; + version = "0.1.0.3"; + sha256 = "17q484rfrwixp2y72x1pxcav2y6sz99la961yn8iwa1ipwljy1s6"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -295942,7 +296856,7 @@ self: { libraryHaskellDepends = [ base void ]; description = "Exhaustive pattern matching using lenses, traversals, and prisms"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "total-alternative" = callPackage @@ -296839,8 +297753,8 @@ self: { ({ mkDerivation, base, exceptions, text, transformers }: mkDerivation { pname = "transformers-either"; - version = "0.1.3"; - sha256 = "0vk4pyk26rpyn17r3imn0phl10lgdfw5cpabf77zpkdq8lr154yr"; + version = "0.1.4"; + sha256 = "10r542fz3gp2szccqzca9dc5jbs2qs2z5lg0vpl8fzlsy9s0xr11"; libraryHaskellDepends = [ base exceptions text transformers ]; description = "An Either monad transformer"; license = lib.licenses.bsd3; @@ -296850,8 +297764,8 @@ self: { ({ mkDerivation, base, exceptions, text, transformers }: mkDerivation { pname = "transformers-except"; - version = "0.1.3"; - sha256 = "038c4gywkhq3qry4h7589z1afh2dw25d6nrhr1yfi0mx4kqanjs8"; + version = "0.1.4"; + sha256 = "03g4cxfmlnybvl9rm5f344hnvaf916vz0rafymkal7ibamhhk6bi"; libraryHaskellDepends = [ base exceptions text transformers ]; description = "An Except monad transformer with"; license = lib.licenses.bsd3; @@ -297380,6 +298294,8 @@ self: { pname = "tree-diff"; version = "0.3.0.1"; sha256 = "1bkjsklsqxq8i8p3zx73pck4ca1kv21zjvn9xhbhz191gygprrj0"; + revision = "2"; + editedCabalFile = "070r8xv71bl57ln6kg51g66pplvvprknm6kai0a75vhjmnz5aicc"; libraryHaskellDepends = [ aeson ansi-terminal ansi-wl-pprint base base-compat bytestring bytestring-builder containers data-array-byte deepseq hashable @@ -297976,8 +298892,8 @@ self: { pname = "trifecta"; version = "2.1.2"; sha256 = "1akx8m6mgskwsbhsf90cxlqjq23jk4pwaxagvm923dpncwrlwfla"; - revision = "1"; - editedCabalFile = "0a7cfbd04w3zbm234mmpib9mxar46ra5xvb62gcnbmixr7b343j9"; + revision = "2"; + editedCabalFile = "0a1dvyzvdxk6sqb5y3y2k5qvyr7vq5jx7a409z3f7wa2mkf5xj02"; libraryHaskellDepends = [ ansi-terminal array base blaze-builder blaze-html blaze-markup bytestring charset comonad containers deepseq fingertree ghc-prim @@ -298736,11 +299652,11 @@ self: { ({ mkDerivation, base, ghc-prim, hspec, template-haskell }: mkDerivation { pname = "tuple-append"; - version = "0.2.0.0"; - sha256 = "18516636w3bgwvymdbzw1971fhja7lrpwx78nz5n67qq23il7rrq"; + version = "0.3.0.0"; + sha256 = "1zg2l5is9329b47cbkkkipgy2xnrpjwvh8mf65jrr2h8mc3bka6h"; libraryHaskellDepends = [ base ghc-prim template-haskell ]; testHaskellDepends = [ base ghc-prim hspec ]; - description = "A package to append items and tuples into new tuples"; + description = "A package to append, sequence and fold items and tuples into new tuples"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; broken = true; @@ -299040,7 +299956,7 @@ self: { benchmarkHaskellDepends = [ base tasty-bench text ]; description = "Shell programming, Haskell-style"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "turtle_1_6_1" = callPackage @@ -299069,7 +299985,7 @@ self: { description = "Shell programming, Haskell-style"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "turtle-options" = callPackage @@ -299182,6 +300098,8 @@ self: { pname = "tweet-hs"; version = "1.0.2.3"; sha256 = "0chkg9xkancp6dms0ha0m86fkcmvk690q6z0rvprg37lhj42xp1i"; + revision = "1"; + editedCabalFile = "06z9iimj3c3c1cx4i7lzvla2355qayqxp1a45fp6rq2xzjr50np1"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -300689,8 +301607,8 @@ self: { pname = "type-unary"; version = "0.3.2"; sha256 = "12h20xjqr1abb5mb4fmij9j0vkfn7rwbidm2dr7ssbkk7cb5fv37"; - revision = "1"; - editedCabalFile = "0pj81qqwd6cvypn923jlqg42v9zb3sv5kjvd93z2cksy3k80mqk6"; + revision = "2"; + editedCabalFile = "0a3mlnz9vh340chqi8pjnzm737mwccjjwmz4sy7gpysqkr0xjmws"; enableSeparateDataOutput = true; libraryHaskellDepends = [ applicative-numbers base constraints newtype-generics ty @@ -300907,7 +301825,7 @@ self: { executableHaskellDepends = [ base diagrams-lib text ]; description = "Typed and composable spreadsheets"; license = lib.licenses.bsd3; - maintainers = [ lib.maintainers.Gabriel439 ]; + maintainers = [ lib.maintainers.Gabriella439 ]; }) {}; "typed-streams" = callPackage @@ -302221,8 +303139,8 @@ self: { }: mkDerivation { pname = "unbound-kind-generics"; - version = "0.2.1.0"; - sha256 = "01xfgjgjnv302dy4w7c8z727ppfr30f1h8y0vhxiy296rzzkdwfm"; + version = "0.2.1.1"; + sha256 = "1502wvg787hpq6d2a0z1vwcpmhzhdcrng1nm2h4955xhfd1rm1ql"; libraryHaskellDepends = [ base kind-generics kind-generics-th unbound-generics ]; @@ -308603,6 +309521,8 @@ self: { pname = "verset"; version = "0.0.1.8"; sha256 = "19l5ck1l1528f7mqks5c6n314cyzrw5qk2ddg77s6y6lv5sm4kv3"; + revision = "1"; + editedCabalFile = "0lf4np9zxl9a48s4sifh49d9gvqv2hhd3wmbr5z1ian83l9slcz7"; libraryHaskellDepends = [ base bytestring containers extra mtl safe text time uuid ]; @@ -309380,8 +310300,8 @@ self: { pname = "visualize-cbn"; version = "0.1.0.2"; sha256 = "1vlidljhy0ykflgf7k8gawlqazcrkvcs7r8wbv7h9x6wfnx0w334"; - revision = "1"; - editedCabalFile = "04cb9j0m83g6qix3lwh62l56kk8qvpzsv3ia8yw43aw9zi4jnrc3"; + revision = "2"; + editedCabalFile = "1c50m624jqyhr7hx75vsik2z2h3hj5f0jpim156hwiirdi266d9n"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -313949,8 +314869,8 @@ self: { ({ mkDerivation, base, Cabal, gtk2hs-buildtools, webkitgtk }: mkDerivation { pname = "webkit2gtk3-javascriptcore"; - version = "0.14.4.4"; - sha256 = "03x9nzdw13j5zwi2l5hz78lz12j6fcf96k6k0iw6bgmcyi4i6w59"; + version = "0.14.4.5"; + sha256 = "05vsizj1nk6wdsgh4qn11hd0w7jsrr130bx6a33k5dk0gmam2ap9"; setupHaskellDepends = [ base Cabal gtk2hs-buildtools ]; libraryHaskellDepends = [ base ]; libraryPkgconfigDepends = [ webkitgtk ]; @@ -315984,6 +316904,26 @@ self: { license = lib.licenses.bsd3; }) {}; + "word8set" = callPackage + ({ mkDerivation, base, deepseq, lattices, QuickCheck, tasty + , tasty-quickcheck, template-haskell, wide-word + }: + mkDerivation { + pname = "word8set"; + version = "0.1.1"; + sha256 = "106sp0qqywfm43c4lriyvfaxzgn03z6m2krarysvp9ff0q3j2nhi"; + libraryHaskellDepends = [ + base deepseq lattices QuickCheck template-haskell wide-word + ]; + testHaskellDepends = [ + base lattices QuickCheck tasty tasty-quickcheck + ]; + description = "Word8 set"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "wordchoice" = callPackage ({ mkDerivation, base, binary, bytestring, Chart, Chart-diagrams , composition-prelude, containers, criterion, directory, Glob, lens @@ -324878,6 +325818,41 @@ self: { mainProgram = "zenacy-html-exe"; }) {}; + "zenacy-html_2_1_0" = callPackage + ({ mkDerivation, base, bytestring, containers, criterion + , data-default, dlist, extra, HUnit, mtl, pretty-show + , raw-strings-qq, safe, safe-exceptions, test-framework + , test-framework-hunit, text, transformers, vector, word8 + }: + mkDerivation { + pname = "zenacy-html"; + version = "2.1.0"; + sha256 = "0xyzgklkjlmx8jq5r67vkjgay4xkb2941m0cq9a8s4s4yjknvfh5"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring containers data-default dlist extra mtl pretty-show + safe safe-exceptions text transformers vector word8 + ]; + executableHaskellDepends = [ + base bytestring containers data-default dlist extra pretty-show + text vector + ]; + testHaskellDepends = [ + base bytestring containers data-default dlist extra HUnit mtl + pretty-show raw-strings-qq test-framework test-framework-hunit text + transformers + ]; + benchmarkHaskellDepends = [ + base bytestring containers criterion data-default dlist pretty-show + raw-strings-qq text + ]; + description = "A standard compliant HTML parsing library"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + mainProgram = "zenacy-html-exe"; + }) {}; + "zenacy-unicode" = callPackage ({ mkDerivation, base, bytestring, HUnit, test-framework , test-framework-hunit, text, vector, word8 diff --git a/pkgs/development/haskell-modules/patches/gtk2hs-buildtools-fix-ghc-9.4.x.patch b/pkgs/development/haskell-modules/patches/gtk2hs-buildtools-fix-ghc-9.4.x.patch deleted file mode 100644 index 948a0366ca4e4..0000000000000 --- a/pkgs/development/haskell-modules/patches/gtk2hs-buildtools-fix-ghc-9.4.x.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff --git a/src/Gtk2HsSetup.hs b/src/Gtk2HsSetup.hs -index 598048f..b652b76 100644 ---- a/src/Gtk2HsSetup.hs -+++ b/src/Gtk2HsSetup.hs -@@ -300,6 +300,7 @@ ourC2hs :: BuildInfo -> LocalBuildInfo -> PreProcessor - ourC2hs bi lbi = PreProcessor { - #endif - platformIndependent = False, -+ ppOrdering = (\ _ _ ms -> return ms), - runPreProcessor = runC2HS bi lbi - } - diff --git a/pkgs/development/interpreters/angelscript/default.nix b/pkgs/development/interpreters/angelscript/default.nix index 5aa19f665a82f..24ac89eb4c5b0 100644 --- a/pkgs/development/interpreters/angelscript/default.nix +++ b/pkgs/development/interpreters/angelscript/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation rec { pname = "angelscript"; - version = "2.36.0"; + version = "2.36.1"; src = fetchurl { url = "https://www.angelcode.com/angelscript/sdk/files/angelscript_${version}.zip"; - sha256 = "sha256-M/lfdZe8DYiwl9NeexMg0VQZ/8V3mFHZ0qbMzsV4EbM="; + sha256 = "sha256-WLt0mvnH44YwRwX05uYnrkHf4D4LanPD0NLgF8T8lI8="; }; nativeBuildInputs = [ unzip cmake ]; diff --git a/pkgs/development/interpreters/clojure/babashka.nix b/pkgs/development/interpreters/clojure/babashka.nix index 20c9b497bb7e9..db68d4ff1add2 100644 --- a/pkgs/development/interpreters/clojure/babashka.nix +++ b/pkgs/development/interpreters/clojure/babashka.nix @@ -7,11 +7,11 @@ buildGraalvmNativeImage rec { pname = "babashka"; - version = "1.3.179"; + version = "1.3.180"; src = fetchurl { url = "https://github.com/babashka/${pname}/releases/download/v${version}/${pname}-${version}-standalone.jar"; - sha256 = "sha256-tF+SqKY7tcJvmOATVwKIZemR2A3eqrbhvSBvr7tcq5U="; + sha256 = "sha256-moNFb5jHTK2XJHx9BAeD+BUH4Y6NyypDM0MycqE5Zwk="; }; graalvmDrv = graalvmCEPackages.graalvm19-ce; diff --git a/pkgs/development/interpreters/clojure/default.nix b/pkgs/development/interpreters/clojure/default.nix index 00ebc85623343..3f70c30dc8d32 100644 --- a/pkgs/development/interpreters/clojure/default.nix +++ b/pkgs/development/interpreters/clojure/default.nix @@ -1,13 +1,13 @@ { lib, stdenv, fetchurl, installShellFiles, jdk, rlwrap, makeWrapper, writeScript }: -stdenv.mkDerivation rec { +stdenv.mkDerivation (finalAttrs: { pname = "clojure"; - version = "1.11.1.1273"; + version = "1.11.1.1347"; src = fetchurl { # https://clojure.org/releases/tools - url = "https://download.clojure.org/install/clojure-tools-${version}.tar.gz"; - sha256 = "sha256-X4uvzyS9FIrJvL5gqOe4CTye2OuODzhxmXcOOPDkDOY="; + url = "https://download.clojure.org/install/clojure-tools-${finalAttrs.version}.tar.gz"; + hash = "sha256-1ebAPk64tJt/Cpt3pKfMTN50YABKPflqG055f4Quv+M="; }; nativeBuildInputs = [ @@ -31,7 +31,7 @@ stdenv.mkDerivation rec { install -Dm644 example-deps.edn "$clojure_lib_dir/example-deps.edn" install -Dm644 tools.edn "$clojure_lib_dir/tools.edn" install -Dm644 exec.jar "$clojure_lib_dir/libexec/exec.jar" - install -Dm644 clojure-tools-${version}.jar "$clojure_lib_dir/libexec/clojure-tools-${version}.jar" + install -Dm644 clojure-tools-${finalAttrs.version}.jar "$clojure_lib_dir/libexec/clojure-tools-${finalAttrs.version}.jar" echo "Installing clojure and clj into $bin_dir" substituteInPlace clojure --replace PREFIX $out @@ -53,7 +53,7 @@ stdenv.mkDerivation rec { CLJ_CONFIG=$TMPDIR CLJ_CACHE=$TMPDIR/.clj_cache $out/bin/clojure \ -Spath \ -Sverbose \ - -Scp $out/libexec/clojure-tools-${version}.jar + -Scp $out/libexec/clojure-tools-${finalAttrs.version}.jar ''; passthru.updateScript = writeScript "update-clojure" '' @@ -98,4 +98,4 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ jlesquembre thiagokokada ]; platforms = platforms.unix; }; -} +}) diff --git a/pkgs/development/interpreters/erlang/24.nix b/pkgs/development/interpreters/erlang/24.nix index ae0a29d08208e..2cea49fd94094 100644 --- a/pkgs/development/interpreters/erlang/24.nix +++ b/pkgs/development/interpreters/erlang/24.nix @@ -1,6 +1,6 @@ { mkDerivation }: mkDerivation { - version = "24.3.4.11"; - sha256 = "sha256-1A73UOCPJnCRCAXTEPc3VTHsDJIWQjlPJXkuwQBV0r4="; + version = "24.3.4.12"; + sha256 = "sha256-XrQvpIHCxXbcaP9cvX1nwl9LumZeVzlgRJwq2Dj0VoY="; } diff --git a/pkgs/development/interpreters/erlang/25.nix b/pkgs/development/interpreters/erlang/25.nix index 8539738575e25..500995a8a2a32 100644 --- a/pkgs/development/interpreters/erlang/25.nix +++ b/pkgs/development/interpreters/erlang/25.nix @@ -1,6 +1,6 @@ { mkDerivation }: mkDerivation { - version = "25.3.2"; - sha256 = "cuFeHwyAyS8R7rXcJJxzE7LTZGgDr4x3qMZx63PIowM="; + version = "25.3.2.1"; + sha256 = "4PDK18/tekJHgNGECG5hv/HvwvteR+FeN6hlpB9FC9o="; } diff --git a/pkgs/development/interpreters/lua-5/default.nix b/pkgs/development/interpreters/lua-5/default.nix index 139dd09e72a33..f4c622515d7d9 100644 --- a/pkgs/development/interpreters/lua-5/default.nix +++ b/pkgs/development/interpreters/lua-5/default.nix @@ -77,29 +77,12 @@ in rec { lua5_4 = callPackage ./interpreter.nix { self = lua5_4; - version = "5.4.4"; - hash = "sha256-Fkx4SWU7gK5nvsS3RzuIS/XMjS3KBWU0dewu0nuev2E="; + version = "5.4.6"; + hash = "sha256-fV6huctqoLWco93hxq3LV++DobqOVDLA7NBr9DmzrYg="; makeWrapper = makeBinaryWrapper; inherit passthruFun; - patches = lib.optional stdenv.isDarwin ./5.4.darwin.patch - ++ [ - (fetchpatch { - name = "CVE-2022-28805.patch"; - url = "https://github.com/lua/lua/commit/1f3c6f4534c6411313361697d98d1145a1f030fa.patch"; - sha256 = "sha256-YTwoolSnRNJIHFPVijSO6ZDw35BG5oWYralZ8qOb9y8="; - stripLen = 1; - extraPrefix = "src/"; - excludes = [ "src/testes/*" ]; - }) - (fetchpatch { - name = "CVE-2022-33099.patch"; - url = "https://github.com/lua/lua/commit/42d40581dd919fb134c07027ca1ce0844c670daf.patch"; - sha256 = "sha256-qj1Dq1ojVoknALSa67jhgH3G3Kk4GtJP6ROFElVF+D0="; - stripLen = 1; - extraPrefix = "src/"; - }) - ]; + patches = lib.optional stdenv.isDarwin ./5.4.darwin.patch; }; lua5_4_compat = lua5_4.override({ diff --git a/pkgs/development/interpreters/php/generic.nix b/pkgs/development/interpreters/php/generic.nix index eb75606273b40..6351eacd658e2 100644 --- a/pkgs/development/interpreters/php/generic.nix +++ b/pkgs/development/interpreters/php/generic.nix @@ -9,7 +9,7 @@ let , nixosTests , tests , fetchurl - , makeWrapper + , makeBinaryWrapper , symlinkJoin , writeText , autoconf @@ -141,7 +141,7 @@ let phpWithExtensions = symlinkJoin { name = "php-with-extensions-${version}"; inherit (php) version; - nativeBuildInputs = [ makeWrapper ]; + nativeBuildInputs = [ makeBinaryWrapper ]; passthru = php.passthru // { buildEnv = mkBuildEnv allArgs allExtensionFunctions; withExtensions = mkWithExtensions allArgs allExtensionFunctions; diff --git a/pkgs/development/interpreters/python/cpython/default.nix b/pkgs/development/interpreters/python/cpython/default.nix index a089dbf2002b9..07f8a7d3c1b76 100644 --- a/pkgs/development/interpreters/python/cpython/default.nix +++ b/pkgs/development/interpreters/python/cpython/default.nix @@ -53,6 +53,7 @@ , enableLTO ? stdenv.is64bit && stdenv.isLinux , reproducibleBuild ? false , pythonAttr ? "python${sourceVersion.major}${sourceVersion.minor}" +, noldconfigPatch ? ./. + "/${sourceVersion.major}.${sourceVersion.minor}/no-ldconfig.patch" } @ inputs: # Note: this package is used for bootstrapping fetchurl, and thus @@ -141,6 +142,11 @@ let "$out/bin/python" else pythonForBuild.interpreter; + src = fetchurl { + url = with sourceVersion; "https://www.python.org/ftp/python/${major}.${minor}.${patch}/Python-${version}.tar.xz"; + inherit hash; + }; + # The CPython interpreter contains a _sysconfigdata_<platform specific suffix> # module that is imported by the sysconfig and distutils.sysconfig modules. # The sysconfigdata module is generated at build time and contains settings @@ -216,15 +222,11 @@ let in with passthru; stdenv.mkDerivation { pname = "python3"; - inherit version; + inherit src version; inherit nativeBuildInputs; buildInputs = [ bash ] ++ buildInputs; # bash is only for patchShebangs - src = fetchurl { - url = with sourceVersion; "https://www.python.org/ftp/python/${major}.${minor}.${patch}/Python-${version}.tar.xz"; - inherit hash; - }; prePatch = optionalString stdenv.isDarwin '' substituteInPlace configure --replace '`/usr/bin/arch`' '"i386"' @@ -251,7 +253,7 @@ in with passthru; stdenv.mkDerivation { # ctypes.util.find_library during the loading of the uuid module # (since it will do a futile invocation of gcc (!) to find # libuuid, slowing down program startup a lot). - (./. + "/${sourceVersion.major}.${sourceVersion.minor}/no-ldconfig.patch") + noldconfigPatch # Make sure that the virtualenv activation scripts are # owner-writable, so venvs can be recreated without permission # errors. @@ -283,7 +285,7 @@ in with passthru; stdenv.mkDerivation { sha256 = "1h18lnpx539h5lfxyk379dxwr8m2raigcjixkf133l4xy3f4bzi2"; } ) - ] ++ optionals (pythonOlder "3.12") [ + ] ++ optionals (pythonAtLeast "3.7" && pythonOlder "3.12") [ # LDSHARED now uses $CC instead of gcc. Fixes cross-compilation of extension modules. ./3.8/0001-On-all-posix-systems-not-just-Darwin-set-LDSHARED-if.patch # Use sysconfigdata to find headers. Fixes cross-compilation of extension modules. @@ -523,7 +525,24 @@ in with passthru; stdenv.mkDerivation { separateDebugInfo = true; - inherit passthru; + passthru = passthru // { + doc = stdenv.mkDerivation { + inherit src; + name = "python${pythonVersion}-${version}-doc"; + + dontConfigure = true; + + dontBuild = true; + + sphinxRoot = "Doc"; + + postInstallSphinx = '' + mv $out/share/doc/* $out/share/doc/python${pythonVersion}-${version} + ''; + + nativeBuildInputs = with pkgsBuildBuild.python3.pkgs; [ sphinxHook python_docs_theme ]; + }; + }; enableParallelBuilding = true; diff --git a/pkgs/development/interpreters/python/default.nix b/pkgs/development/interpreters/python/default.nix index 510aacbdc33a8..6eae07ac3a72f 100644 --- a/pkgs/development/interpreters/python/default.nix +++ b/pkgs/development/interpreters/python/default.nix @@ -8,113 +8,12 @@ , makeScopeWithSplicing , pythonPackagesExtensions , stdenv -}: +}@args: (let # Common passthru for all Python interpreters. - passthruFun = - { implementation - , libPrefix - , executable - , sourceVersion - , pythonVersion - , packageOverrides - , sitePackages - , hasDistutilsCxxPatch - , pythonOnBuildForBuild - , pythonOnBuildForHost - , pythonOnBuildForTarget - , pythonOnHostForHost - , pythonOnTargetForTarget - , pythonAttr ? null - , self # is pythonOnHostForTarget - }: let - pythonPackages = let - ensurePythonModules = items: let - exceptions = [ - stdenv - ]; - providesSetupHook = lib.attrByPath [ "provides" "setupHook"] false; - valid = value: pythonPackages.hasPythonModule value || providesSetupHook value || lib.elem value exceptions; - func = name: value: - if lib.isDerivation value then - lib.extendDerivation (valid value || throw "${name} should use `buildPythonPackage` or `toPythonModule` if it is to be part of the Python packages set.") {} value - else - value; - in lib.mapAttrs func items; - in ensurePythonModules (callPackage - # Function that when called - # - imports python-packages.nix - # - adds spliced package sets to the package set - # - applies overrides from `packageOverrides` and `pythonPackagesOverlays`. - ({ pkgs, stdenv, python, overrides }: let - pythonPackagesFun = import ./python-packages-base.nix { - inherit stdenv pkgs lib; - python = self; - }; - otherSplices = { - selfBuildBuild = pythonOnBuildForBuild.pkgs; - selfBuildHost = pythonOnBuildForHost.pkgs; - selfBuildTarget = pythonOnBuildForTarget.pkgs; - selfHostHost = pythonOnHostForHost.pkgs; - selfTargetTarget = pythonOnTargetForTarget.pkgs or {}; # There is no Python TargetTarget. - }; - hooks = import ./hooks/default.nix; - keep = lib.extends hooks pythonPackagesFun; - extra = _: {}; - optionalExtensions = cond: as: lib.optionals cond as; - pythonExtension = import ../../../top-level/python-packages.nix; - python2Extension = import ../../../top-level/python2-packages.nix; - extensions = lib.composeManyExtensions ([ - pythonExtension - ] ++ (optionalExtensions (!self.isPy3k) [ - python2Extension - ]) ++ pythonPackagesExtensions ++ [ - overrides - ]); - aliases = self: super: lib.optionalAttrs config.allowAliases (import ../../../top-level/python-aliases.nix lib self super); - in makeScopeWithSplicing - otherSplices - keep - extra - (lib.extends (lib.composeExtensions aliases extensions) keep)) - { - overrides = packageOverrides; - python = self; - }); - in rec { - isPy27 = pythonVersion == "2.7"; - isPy37 = pythonVersion == "3.7"; - isPy38 = pythonVersion == "3.8"; - isPy39 = pythonVersion == "3.9"; - isPy310 = pythonVersion == "3.10"; - isPy311 = pythonVersion == "3.11"; - isPy312 = pythonVersion == "3.12"; - isPy2 = lib.strings.substring 0 1 pythonVersion == "2"; - isPy3 = lib.strings.substring 0 1 pythonVersion == "3"; - isPy3k = isPy3; - isPyPy = lib.hasInfix "pypy" interpreter; - - buildEnv = callPackage ./wrapper.nix { python = self; inherit (pythonPackages) requiredPythonModules; }; - withPackages = import ./with-packages.nix { inherit buildEnv pythonPackages;}; - pkgs = pythonPackages; - interpreter = "${self}/bin/${executable}"; - inherit executable implementation libPrefix pythonVersion sitePackages; - inherit sourceVersion; - pythonAtLeast = lib.versionAtLeast pythonVersion; - pythonOlder = lib.versionOlder pythonVersion; - inherit hasDistutilsCxxPatch; - # TODO: rename to pythonOnBuild - # Not done immediately because its likely used outside Nixpkgs. - pythonForBuild = pythonOnBuildForHost.override { inherit packageOverrides; self = pythonForBuild; }; - - tests = callPackage ./tests.nix { - python = self; - }; - - inherit pythonAttr; - }; + passthruFun = import ./passthrufun.nix args; sources = { python310 = { diff --git a/pkgs/development/interpreters/python/passthrufun.nix b/pkgs/development/interpreters/python/passthrufun.nix new file mode 100644 index 0000000000000..aa63f354e085d --- /dev/null +++ b/pkgs/development/interpreters/python/passthrufun.nix @@ -0,0 +1,103 @@ +{ lib, stdenv, callPackage, pythonPackagesExtensions, config, makeScopeWithSplicing, ... }: + +{ implementation +, libPrefix +, executable +, sourceVersion +, pythonVersion +, packageOverrides +, sitePackages +, hasDistutilsCxxPatch +, pythonOnBuildForBuild +, pythonOnBuildForHost +, pythonOnBuildForTarget +, pythonOnHostForHost +, pythonOnTargetForTarget +, pythonAttr ? null +, self # is pythonOnHostForTarget +}: let + pythonPackages = let + ensurePythonModules = items: let + exceptions = [ + stdenv + ]; + providesSetupHook = lib.attrByPath [ "provides" "setupHook"] false; + valid = value: pythonPackages.hasPythonModule value || providesSetupHook value || lib.elem value exceptions; + func = name: value: + if lib.isDerivation value then + lib.extendDerivation (valid value || throw "${name} should use `buildPythonPackage` or `toPythonModule` if it is to be part of the Python packages set.") {} value + else + value; + in lib.mapAttrs func items; + in ensurePythonModules (callPackage + # Function that when called + # - imports python-packages.nix + # - adds spliced package sets to the package set + # - applies overrides from `packageOverrides` and `pythonPackagesOverlays`. + ({ pkgs, stdenv, python, overrides }: let + pythonPackagesFun = import ./python-packages-base.nix { + inherit stdenv pkgs lib; + python = self; + }; + otherSplices = { + selfBuildBuild = pythonOnBuildForBuild.pkgs; + selfBuildHost = pythonOnBuildForHost.pkgs; + selfBuildTarget = pythonOnBuildForTarget.pkgs; + selfHostHost = pythonOnHostForHost.pkgs; + selfTargetTarget = pythonOnTargetForTarget.pkgs or {}; # There is no Python TargetTarget. + }; + hooks = import ./hooks/default.nix; + keep = lib.extends hooks pythonPackagesFun; + extra = _: {}; + optionalExtensions = cond: as: lib.optionals cond as; + pythonExtension = import ../../../top-level/python-packages.nix; + python2Extension = import ../../../top-level/python2-packages.nix; + extensions = lib.composeManyExtensions ([ + pythonExtension + ] ++ (optionalExtensions (!self.isPy3k) [ + python2Extension + ]) ++ pythonPackagesExtensions ++ [ + overrides + ]); + aliases = self: super: lib.optionalAttrs config.allowAliases (import ../../../top-level/python-aliases.nix lib self super); + in makeScopeWithSplicing + otherSplices + keep + extra + (lib.extends (lib.composeExtensions aliases extensions) keep)) + { + overrides = packageOverrides; + python = self; + }); +in rec { + isPy27 = pythonVersion == "2.7"; + isPy37 = pythonVersion == "3.7"; + isPy38 = pythonVersion == "3.8"; + isPy39 = pythonVersion == "3.9"; + isPy310 = pythonVersion == "3.10"; + isPy311 = pythonVersion == "3.11"; + isPy312 = pythonVersion == "3.12"; + isPy2 = lib.strings.substring 0 1 pythonVersion == "2"; + isPy3 = lib.strings.substring 0 1 pythonVersion == "3"; + isPy3k = isPy3; + isPyPy = lib.hasInfix "pypy" interpreter; + + buildEnv = callPackage ./wrapper.nix { python = self; inherit (pythonPackages) requiredPythonModules; }; + withPackages = import ./with-packages.nix { inherit buildEnv pythonPackages;}; + pkgs = pythonPackages; + interpreter = "${self}/bin/${executable}"; + inherit executable implementation libPrefix pythonVersion sitePackages; + inherit sourceVersion; + pythonAtLeast = lib.versionAtLeast pythonVersion; + pythonOlder = lib.versionOlder pythonVersion; + inherit hasDistutilsCxxPatch; + # TODO: rename to pythonOnBuild + # Not done immediately because its likely used outside Nixpkgs. + pythonForBuild = pythonOnBuildForHost.override { inherit packageOverrides; self = pythonForBuild; }; + + tests = callPackage ./tests.nix { + python = self; + }; + + inherit pythonAttr; +} diff --git a/pkgs/development/interpreters/python/python-packages-base.nix b/pkgs/development/interpreters/python/python-packages-base.nix index 0899ad18e967c..6a723413c850c 100644 --- a/pkgs/development/interpreters/python/python-packages-base.nix +++ b/pkgs/development/interpreters/python/python-packages-base.nix @@ -8,7 +8,6 @@ self: let inherit (self) callPackage; - inherit (python.passthru) isPy27 isPy37 isPy38 isPy39 isPy310 isPy311 isPy3k isPyPy pythonAtLeast pythonOlder; namePrefix = python.libPrefix + "-"; @@ -92,7 +91,6 @@ in { inherit lib pkgs stdenv; inherit (python.passthru) isPy27 isPy37 isPy38 isPy39 isPy310 isPy311 isPy3k isPyPy pythonAtLeast pythonOlder; inherit buildPythonPackage buildPythonApplication; - inherit (pkgs) fetchPypi; inherit hasPythonModule requiredPythonModules makePythonPath disabled disabledIf; inherit toPythonModule toPythonApplication; inherit buildSetupcfg; diff --git a/pkgs/development/interpreters/ruby/dev.nix b/pkgs/development/interpreters/ruby/dev.nix index 62d561fbc1426..dea21118b2001 100644 --- a/pkgs/development/interpreters/ruby/dev.nix +++ b/pkgs/development/interpreters/ruby/dev.nix @@ -1,5 +1,5 @@ /* An environment for development that bundles ruby, bundler and bundix - together. This avoids version conflicts where each is using a diferent + together. This avoids version conflicts where each is using a different version of each-other. */ { buildEnv, ruby, bundler, bundix }: diff --git a/pkgs/development/interpreters/wasmtime/default.nix b/pkgs/development/interpreters/wasmtime/default.nix index a568b364edfdf..7e40b1d4adb40 100644 --- a/pkgs/development/interpreters/wasmtime/default.nix +++ b/pkgs/development/interpreters/wasmtime/default.nix @@ -2,17 +2,17 @@ rustPlatform.buildRustPackage rec { pname = "wasmtime"; - version = "9.0.2"; + version = "9.0.3"; src = fetchFromGitHub { owner = "bytecodealliance"; repo = pname; rev = "v${version}"; - hash = "sha256-Fnc3iepxHr7WjorFoabHE6ZM/zK1T5W/gkxL+AEcVgU="; + hash = "sha256-b/GioFixPpbCUiYfOLwJ1NCsLGqIm+v9ODuq6kD8JeE="; fetchSubmodules = true; }; - cargoHash = "sha256-7Q5aJU0sYzRLgjiSNLIrydYRJ3ozABjDo4VtmexS3po="; + cargoHash = "sha256-AYb6dbmvoFYbvgik9rdyOnxdHdnhR8thnrQShGxRLFA="; cargoBuildFlags = [ "--package" "wasmtime-cli" "--package" "wasmtime-c-api" ]; @@ -36,6 +36,10 @@ rustPlatform.buildRustPackage rec { install -m0644 $src/crates/c-api/include/*.h $dev/include install -m0644 $src/crates/c-api/include/wasmtime/*.h $dev/include/wasmtime install -m0644 $src/crates/c-api/wasm-c-api/include/* $dev/include + '' + lib.optionalString stdenv.isDarwin '' + install_name_tool -id \ + $dev/lib/libwasmtime.dylib \ + $dev/lib/libwasmtime.dylib ''; meta = with lib; { diff --git a/pkgs/development/libraries/PlistCpp/default.nix b/pkgs/development/libraries/PlistCpp/default.nix index c2d5e6dceac7b..4eea44e3ba0bd 100644 --- a/pkgs/development/libraries/PlistCpp/default.nix +++ b/pkgs/development/libraries/PlistCpp/default.nix @@ -11,6 +11,10 @@ stdenv.mkDerivation { sha256 = "10jn6bvm9vn6492zix2pd724v5h4lccmkqg3lxfw8r0qg3av0yzv"; }; + postPatch = '' + sed -i "1i #include <algorithm>" src/Plist.cpp + ''; + nativeBuildInputs = [ cmake ]; buildInputs = [ boost NSPlist pugixml ]; diff --git a/pkgs/development/libraries/SDL2/default.nix b/pkgs/development/libraries/SDL2/default.nix index 8160554a0609d..7fe3fb38a1f7e 100644 --- a/pkgs/development/libraries/SDL2/default.nix +++ b/pkgs/development/libraries/SDL2/default.nix @@ -88,7 +88,7 @@ stdenv.mkDerivation rec { dlopenPropagatedBuildInputs = [ ] # Propagated for #include <GLES/gl.h> in SDL_opengles.h. - ++ lib.optional openglSupport libGL + ++ lib.optional (openglSupport && !stdenv.isDarwin) libGL # Propagated for #include <X11/Xlib.h> and <X11/Xatom.h> in SDL_syswm.h. ++ lib.optionals x11Support [ libX11 ]; diff --git a/pkgs/development/libraries/SDL2_ttf/default.nix b/pkgs/development/libraries/SDL2_ttf/default.nix index 06793ee5e551a..66f53949c2459 100644 --- a/pkgs/development/libraries/SDL2_ttf/default.nix +++ b/pkgs/development/libraries/SDL2_ttf/default.nix @@ -13,7 +13,8 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ pkg-config ]; - buildInputs = [ SDL2 freetype libGL ] + buildInputs = [ SDL2 freetype ] + ++ lib.optional (!stdenv.isDarwin) libGL ++ lib.optional stdenv.isDarwin darwin.libobjc; meta = with lib; { diff --git a/pkgs/development/libraries/SDL_compat/default.nix b/pkgs/development/libraries/SDL_compat/default.nix index ff5d2649aa0af..919963bb0c9a4 100644 --- a/pkgs/development/libraries/SDL_compat/default.nix +++ b/pkgs/development/libraries/SDL_compat/default.nix @@ -19,13 +19,13 @@ let in stdenv.mkDerivation rec { pname = "SDL_compat"; - version = "1.2.60"; + version = "1.2.64"; src = fetchFromGitHub { owner = "libsdl-org"; repo = "sdl12-compat"; rev = "release-" + version; - hash = "sha256-8b9rFI4iRpBJqeJ2KRJ9vRyv9gYwa9jRWCuXRfA3x50="; + hash = "sha256-Ctl7RElRWaB4IpBZD5Sm0rYOcv5zaIag78VTKoFlbVs="; }; nativeBuildInputs = [ cmake pkg-config ] diff --git a/pkgs/development/libraries/abseil-cpp/202103.nix b/pkgs/development/libraries/abseil-cpp/202103.nix index 1c75853f52203..712f89e383fff 100644 --- a/pkgs/development/libraries/abseil-cpp/202103.nix +++ b/pkgs/development/libraries/abseil-cpp/202103.nix @@ -25,6 +25,14 @@ stdenv.mkDerivation rec { url = "https://github.com/abseil/abseil-cpp/commit/5bfa70c75e621c5d5ec095c8c4c0c050dcb2957e.patch"; sha256 = "0nhjxqfxpi2pkfinnqvd5m4npf9l1kg39mjx9l3087ajhadaywl5"; }) + + # Bacport gcc-13 fix: + # https://github.com/abseil/abseil-cpp/pull/1187 + (fetchpatch { + name = "gcc-13.patch"; + url = "https://github.com/abseil/abseil-cpp/commit/36a4b073f1e7e02ed7d1ac140767e36f82f09b7c.patch"; + hash = "sha256-aA7mwGEtv/cQINcawjkukmCvfNuqwUeDFssSiNKPdgg="; + }) ] ++ lib.optionals stdenv.hostPlatform.isLoongArch64 [ # https://github.com/abseil/abseil-cpp/pull/1110 (fetchpatch { diff --git a/pkgs/development/libraries/accountsservice/Disable-methods-that-change-files-in-etc.patch b/pkgs/development/libraries/accountsservice/Disable-methods-that-change-files-in-etc.patch index acaccb8c84855..23e1de95fdffd 100644 --- a/pkgs/development/libraries/accountsservice/Disable-methods-that-change-files-in-etc.patch +++ b/pkgs/development/libraries/accountsservice/Disable-methods-that-change-files-in-etc.patch @@ -10,10 +10,10 @@ Only if environment variable NIXOS_USERS_PURE is set. 2 files changed, 45 insertions(+) diff --git a/src/daemon.c b/src/daemon.c -index e62e124..87459b2 100644 +index 861430f..aefaf2d 100644 --- a/src/daemon.c +++ b/src/daemon.c -@@ -931,6 +931,11 @@ daemon_create_user (AccountsAccounts *accounts, +@@ -1378,6 +1378,11 @@ daemon_create_user (AccountsAccounts *accounts, const gchar *real_name, gint account_type) { @@ -22,10 +22,10 @@ index e62e124..87459b2 100644 + return; + } + - Daemon *daemon = (Daemon*)accounts; + Daemon *daemon = (Daemon *) accounts; CreateUserData *data; -@@ -1138,6 +1143,11 @@ daemon_delete_user (AccountsAccounts *accounts, +@@ -1581,6 +1586,11 @@ daemon_delete_user (AccountsAccounts *accounts, gint64 uid, gboolean remove_files) { @@ -34,14 +34,14 @@ index e62e124..87459b2 100644 + return; + } + - Daemon *daemon = (Daemon*)accounts; + Daemon *daemon = (Daemon *) accounts; DeleteUserData *data; diff --git a/src/user.c b/src/user.c -index 0fb1a17..dbdebaf 100644 +index 28170db..df947a1 100644 --- a/src/user.c +++ b/src/user.c -@@ -904,6 +904,11 @@ user_set_real_name (AccountsUser *auser, +@@ -1216,6 +1216,11 @@ user_set_real_name (AccountsUser *auser, GDBusMethodInvocation *context, const gchar *real_name) { @@ -50,10 +50,10 @@ index 0fb1a17..dbdebaf 100644 + return; + } + - User *user = (User*)auser; + User *user = (User *) auser; int uid; const gchar *action_id; -@@ -981,6 +986,11 @@ user_set_user_name (AccountsUser *auser, +@@ -1293,6 +1298,11 @@ user_set_user_name (AccountsUser *auser, GDBusMethodInvocation *context, const gchar *user_name) { @@ -62,10 +62,10 @@ index 0fb1a17..dbdebaf 100644 + return; + } + - User *user = (User*)auser; + User *user = (User *) auser; + daemon_local_check_auth (user->daemon, - user, -@@ -1263,6 +1273,11 @@ user_set_home_directory (AccountsUser *auser, +@@ -1945,6 +1955,11 @@ user_set_home_directory (AccountsUser *auser, GDBusMethodInvocation *context, const gchar *home_dir) { @@ -74,10 +74,10 @@ index 0fb1a17..dbdebaf 100644 + return; + } + - User *user = (User*)auser; + User *user = (User *) auser; + daemon_local_check_auth (user->daemon, - user, -@@ -1322,6 +1337,11 @@ user_set_shell (AccountsUser *auser, +@@ -2000,6 +2015,11 @@ user_set_shell (AccountsUser *auser, GDBusMethodInvocation *context, const gchar *shell) { @@ -86,10 +86,10 @@ index 0fb1a17..dbdebaf 100644 + return; + } + - User *user = (User*)auser; + User *user = (User *) auser; + daemon_local_check_auth (user->daemon, - user, -@@ -1602,6 +1622,11 @@ user_set_locked (AccountsUser *auser, +@@ -2249,6 +2269,11 @@ user_set_locked (AccountsUser *auser, GDBusMethodInvocation *context, gboolean locked) { @@ -98,10 +98,10 @@ index 0fb1a17..dbdebaf 100644 + return; + } + - User *user = (User*)auser; + User *user = (User *) auser; + daemon_local_check_auth (user->daemon, - user, -@@ -1814,6 +1839,11 @@ user_set_password_mode (AccountsUser *auser, +@@ -2457,6 +2482,11 @@ user_set_password_mode (AccountsUser *auser, GDBusMethodInvocation *context, gint mode) { @@ -110,10 +110,10 @@ index 0fb1a17..dbdebaf 100644 + return; + } + - User *user = (User*)auser; + User *user = (User *) auser; const gchar *action_id; - -@@ -1905,6 +1935,11 @@ user_set_password (AccountsUser *auser, + gint uid; +@@ -2550,6 +2580,11 @@ user_set_password (AccountsUser *auser, const gchar *password, const gchar *hint) { @@ -122,9 +122,6 @@ index 0fb1a17..dbdebaf 100644 + return; + } + - User *user = (User*)auser; + User *user = (User *) auser; gchar **data; - --- -2.9.3 - + const gchar *action_id; diff --git a/pkgs/development/libraries/accountsservice/default.nix b/pkgs/development/libraries/accountsservice/default.nix index 584b328d47001..1a5f03f635bc2 100644 --- a/pkgs/development/libraries/accountsservice/default.nix +++ b/pkgs/development/libraries/accountsservice/default.nix @@ -21,13 +21,13 @@ stdenv.mkDerivation rec { pname = "accountsservice"; - version = "22.08.8"; + version = "23.13.9"; outputs = [ "out" "dev" ]; src = fetchurl { url = "https://www.freedesktop.org/software/accountsservice/accountsservice-${version}.tar.xz"; - sha256 = "kJmXp2kZ/n3BOKmgHOpwvWItWpMtvJ+xMBARMCOno5E="; + sha256 = "rdpM3q4k+gmS598///nv+nCQvjrCM6Pt/fadWpybkk8="; }; patches = [ @@ -46,6 +46,10 @@ stdenv.mkDerivation rec { # Do not ignore third-party (e.g Pantheon) extensions not matching FHS path scheme. # Fixes https://github.com/NixOS/nixpkgs/issues/72396 ./drop-prefix-check-extensions.patch + + # Detect DM type from config file. + # `readlink display-manager.service` won't return any of the candidates. + ./get-dm-type-from-config.patch ]; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/accountsservice/drop-prefix-check-extensions.patch b/pkgs/development/libraries/accountsservice/drop-prefix-check-extensions.patch index 4b5222c9552d8..d4b7eac1cb316 100644 --- a/pkgs/development/libraries/accountsservice/drop-prefix-check-extensions.patch +++ b/pkgs/development/libraries/accountsservice/drop-prefix-check-extensions.patch @@ -1,8 +1,8 @@ diff --git a/src/extensions.c b/src/extensions.c -index 038dcb2..830465d 100644 +index 354f476..8d020a6 100644 --- a/src/extensions.c +++ b/src/extensions.c -@@ -121,16 +121,7 @@ daemon_read_extension_directory (GHashTable *ifaces, +@@ -122,15 +122,7 @@ daemon_read_extension_directory (GHashTable *ifaces, continue; } @@ -10,8 +10,7 @@ index 038dcb2..830465d 100644 - const gchar * const prefix = "../../dbus-1/interfaces/"; - if (g_str_has_prefix (symlink, prefix) && g_str_equal (symlink + strlen (prefix), name)) { - daemon_read_extension_file (ifaces, filename); -- } -- else { +- } else { - g_warning ("Found accounts service vendor extension symlink %s, but it must be exactly " - "equal to '../../dbus-1/interfaces/%s' for forwards-compatibility reasons.", - filename, name); diff --git a/pkgs/development/libraries/accountsservice/fix-paths.patch b/pkgs/development/libraries/accountsservice/fix-paths.patch index 0ed8e04579f4a..d4b48e882e53d 100644 --- a/pkgs/development/libraries/accountsservice/fix-paths.patch +++ b/pkgs/development/libraries/accountsservice/fix-paths.patch @@ -1,8 +1,8 @@ diff --git a/src/daemon.c b/src/daemon.c -index c8b6320..2b74949 100644 +index aa9d050..861430f 100644 --- a/src/daemon.c +++ b/src/daemon.c -@@ -1102,7 +1102,7 @@ daemon_create_user_authorized_cb (Daemon *daemon, +@@ -1319,7 +1319,7 @@ daemon_create_user_authorized_cb (Daemon *daemon, sys_log (context, "create user '%s'", cd->user_name); @@ -11,7 +11,7 @@ index c8b6320..2b74949 100644 argv[1] = "-m"; argv[2] = "-c"; argv[3] = cd->real_name; -@@ -1335,7 +1335,7 @@ daemon_delete_user_authorized_cb (Daemon *daemon, +@@ -1552,7 +1552,7 @@ daemon_delete_user_authorized_cb (Daemon *daemon, } free (resolved_homedir); @@ -21,10 +21,10 @@ index c8b6320..2b74949 100644 argv[1] = "-f"; argv[2] = "-r"; diff --git a/src/user.c b/src/user.c -index 189b2c5..5358c02 100644 +index 917d427..28170db 100644 --- a/src/user.c +++ b/src/user.c -@@ -1145,7 +1145,7 @@ user_change_real_name_authorized_cb (Daemon *daemon, +@@ -1193,7 +1193,7 @@ user_change_real_name_authorized_cb (Daemon *daemon, new_gecos = g_strdup (name); } @@ -33,7 +33,7 @@ index 189b2c5..5358c02 100644 argv[1] = "-c"; argv[2] = new_gecos; argv[3] = "--"; -@@ -1218,7 +1218,7 @@ user_change_user_name_authorized_cb (Daemon *daemon, +@@ -1267,7 +1267,7 @@ user_change_user_name_authorized_cb (Daemon *daemon, accounts_user_get_uid (ACCOUNTS_USER (user)), name); @@ -42,7 +42,25 @@ index 189b2c5..5358c02 100644 argv[1] = "-l"; argv[2] = name; argv[3] = "--"; -@@ -1627,7 +1627,7 @@ user_change_home_dir_authorized_cb (Daemon *daemon, +@@ -1718,7 +1718,7 @@ user_set_password_expiration_policy_authorized_cb (Daemon *daemon + accounts_user_get_uid (ACCOUNTS_USER (user))); + + g_object_freeze_notify (G_OBJECT (user)); +- argv[0] = "/usr/bin/chage"; ++ argv[0] = "@shadow@/bin/chage"; + argv[1] = "-m"; + argv[2] = pwd_expiration->min_days_between_changes; + argv[3] = "-M"; +@@ -1806,7 +1806,7 @@ user_set_user_expiration_policy_authorized_cb (Daemon *daemon, + } else { + expiration_time = g_strdup ("-1"); + } +- argv[0] = "/usr/bin/chage"; ++ argv[0] = "@shadow@/bin/chage"; + argv[1] = "-E"; + argv[2] = expiration_time; + argv[3] = accounts_user_get_user_name (ACCOUNTS_USER (user)); +@@ -1919,7 +1919,7 @@ user_change_home_dir_authorized_cb (Daemon *daemon, accounts_user_get_uid (ACCOUNTS_USER (user)), home_dir); @@ -51,7 +69,7 @@ index 189b2c5..5358c02 100644 argv[1] = "-m"; argv[2] = "-d"; argv[3] = home_dir; -@@ -1683,7 +1683,7 @@ user_change_shell_authorized_cb (Daemon *daemon, +@@ -1977,7 +1977,7 @@ user_change_shell_authorized_cb (Daemon *daemon, accounts_user_get_uid (ACCOUNTS_USER (user)), shell); @@ -60,7 +78,7 @@ index 189b2c5..5358c02 100644 argv[1] = "-s"; argv[2] = shell; argv[3] = "--"; -@@ -1824,7 +1824,7 @@ user_change_icon_file_authorized_cb (Daemon *daemon, +@@ -2120,7 +2120,7 @@ user_change_icon_file_authorized_cb (Daemon *daemon, return; } @@ -69,7 +87,7 @@ index 189b2c5..5358c02 100644 argv[1] = filename; argv[2] = NULL; -@@ -1904,7 +1904,7 @@ user_change_locked_authorized_cb (Daemon *daemon, +@@ -2201,7 +2201,7 @@ user_change_locked_authorized_cb (Daemon *daemon, locked ? "locking" : "unlocking", accounts_user_get_user_name (ACCOUNTS_USER (user)), accounts_user_get_uid (ACCOUNTS_USER (user))); @@ -78,7 +96,7 @@ index 189b2c5..5358c02 100644 argv[1] = locked ? "-L" : "-U"; argv[2] = "--"; argv[3] = accounts_user_get_user_name (ACCOUNTS_USER (user)); -@@ -2026,7 +2026,7 @@ user_change_account_type_authorized_cb (Daemon *daemon, +@@ -2328,7 +2328,7 @@ user_change_account_type_authorized_cb (Daemon *daemon, g_free (groups); @@ -87,16 +105,16 @@ index 189b2c5..5358c02 100644 argv[1] = "-G"; argv[2] = str->str; argv[3] = "--"; -@@ -2093,7 +2093,7 @@ user_change_password_mode_authorized_cb (Daemon *daemon, +@@ -2396,7 +2396,7 @@ user_change_password_mode_authorized_cb (Daemon *daemon, + if (mode == PASSWORD_MODE_SET_AT_LOGIN || mode == PASSWORD_MODE_NONE) { - - argv[0] = "/usr/bin/passwd"; + argv[0] = "/run/wrappers/bin/passwd"; argv[1] = "-d"; argv[2] = "--"; argv[3] = accounts_user_get_user_name (ACCOUNTS_USER (user)); -@@ -2105,7 +2105,7 @@ user_change_password_mode_authorized_cb (Daemon *daemon, +@@ -2408,7 +2408,7 @@ user_change_password_mode_authorized_cb (Daemon *daemon, } if (mode == PASSWORD_MODE_SET_AT_LOGIN) { @@ -105,21 +123,21 @@ index 189b2c5..5358c02 100644 argv[1] = "-d"; argv[2] = "0"; argv[3] = "--"; -@@ -2126,7 +2126,7 @@ user_change_password_mode_authorized_cb (Daemon *daemon, +@@ -2428,7 +2428,7 @@ user_change_password_mode_authorized_cb (Daemon *daemon, + */ accounts_user_set_locked (ACCOUNTS_USER (user), FALSE); - } - else if (accounts_user_get_locked (ACCOUNTS_USER (user))) { + } else if (accounts_user_get_locked (ACCOUNTS_USER (user))) { - argv[0] = "/usr/sbin/usermod"; + argv[0] = "@shadow@/bin/usermod"; argv[1] = "-U"; argv[2] = "--"; argv[3] = accounts_user_get_user_name (ACCOUNTS_USER (user)); -@@ -2203,7 +2203,7 @@ user_change_password_authorized_cb (Daemon *daemon, +@@ -2505,7 +2505,7 @@ user_change_password_authorized_cb (Daemon *daemon, - g_object_freeze_notify (G_OBJECT (user)); + g_autoptr (GError) error = NULL; + g_autoptr (GSubprocess) process = NULL; +- const char *argv[] = { "/usr/sbin/chpasswd", "-e", NULL }; ++ const char *argv[] = { "@shadow@/bin/chpasswd", "-e", NULL }; -- argv[0] = "/usr/sbin/usermod"; -+ argv[0] = "@shadow@/bin/usermod"; - argv[1] = "-p"; - argv[2] = strings[0]; - argv[3] = "--"; + sys_log (context, + "set password and hint of user '%s' (%" G_GUINT64_FORMAT ")", diff --git a/pkgs/development/libraries/accountsservice/get-dm-type-from-config.patch b/pkgs/development/libraries/accountsservice/get-dm-type-from-config.patch new file mode 100644 index 0000000000000..3d4398ab303a5 --- /dev/null +++ b/pkgs/development/libraries/accountsservice/get-dm-type-from-config.patch @@ -0,0 +1,15 @@ +diff --git a/src/daemon.c b/src/daemon.c +index aefaf2d..7c004d0 100644 +--- a/src/daemon.c ++++ b/src/daemon.c +@@ -193,9 +193,9 @@ get_current_system_dm_type (void) + basename = g_file_get_basename (file); + g_object_unref (file); + +- if (g_strcmp0 (basename, "lightdm.service") == 0) ++ if (g_file_test (PATH_LIGHTDM_CONF, G_FILE_TEST_EXISTS)) + return DISPLAY_MANAGER_TYPE_LIGHTDM; +- else if (g_strcmp0 (basename, "gdm.service") == 0) ++ else if (g_file_test (PATH_GDM_CUSTOM, G_FILE_TEST_EXISTS)) + return DISPLAY_MANAGER_TYPE_GDM; + } diff --git a/pkgs/development/libraries/accountsservice/no-create-dirs.patch b/pkgs/development/libraries/accountsservice/no-create-dirs.patch index 5d137eb52a112..9fbba4599c9f1 100644 --- a/pkgs/development/libraries/accountsservice/no-create-dirs.patch +++ b/pkgs/development/libraries/accountsservice/no-create-dirs.patch @@ -2,7 +2,7 @@ diff --git a/meson_post_install.py b/meson_post_install.py index d8c3dd1..620f714 100644 --- a/meson_post_install.py +++ b/meson_post_install.py -@@ -9,9 +9,9 @@ localstatedir = os.path.normpath(destdir + os.sep + sys.argv[1]) +@@ -9,9 +9,9 @@ # FIXME: meson will not track the creation of these directories # https://github.com/mesonbuild/meson/blob/master/mesonbuild/scripts/uninstall.py#L39 dst_dirs = [ diff --git a/pkgs/development/libraries/amdvlk/default.nix b/pkgs/development/libraries/amdvlk/default.nix index 9f24514144a97..aa3fe0b16b08e 100644 --- a/pkgs/development/libraries/amdvlk/default.nix +++ b/pkgs/development/libraries/amdvlk/default.nix @@ -25,13 +25,13 @@ let in stdenv.mkDerivation rec { pname = "amdvlk"; - version = "2023.Q2.1"; + version = "2023.Q2.2"; src = fetchRepoProject { name = "${pname}-src"; manifest = "https://github.com/GPUOpen-Drivers/AMDVLK.git"; rev = "refs/tags/v-${version}"; - sha256 = "znjv50seqN2Rdzwnu/5ks6q1uiUacM/Z5fzMyCgv0b8="; + sha256 = "V6DszDpiwvIcfWh2f8+1sWTQJHxwsxm0LoxSLoJOWHo="; }; buildInputs = [ diff --git a/pkgs/development/libraries/aqbanking/sources.nix b/pkgs/development/libraries/aqbanking/sources.nix index d065e3f7f47f9..61632662122dd 100644 --- a/pkgs/development/libraries/aqbanking/sources.nix +++ b/pkgs/development/libraries/aqbanking/sources.nix @@ -15,8 +15,8 @@ # https://www.aquamaniac.de/rdm/projects/aqbanking/files aqbanking = { - version = "6.5.3"; - hash = "sha256-bGK/JqpC5psh4Yi1T2pdgl1to03hoUy8O2fYWpcFE24="; - releaseId = "467"; + version = "6.5.4"; + hash = "sha256-DRbOrnbwcY5GZjj0VHqLFJJ/HY2YMiB5zWSBrd4wrJk="; + releaseId = "499"; }; } diff --git a/pkgs/development/libraries/armadillo/default.nix b/pkgs/development/libraries/armadillo/default.nix index 9eeb138f634b9..d085dbc31ced4 100644 --- a/pkgs/development/libraries/armadillo/default.nix +++ b/pkgs/development/libraries/armadillo/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "armadillo"; - version = "12.2.0"; + version = "12.4.0"; src = fetchurl { url = "mirror://sourceforge/arma/armadillo-${version}.tar.xz"; - sha256 = "sha256-sNzgQil+hlrdM1Ha1394wsdjjWYy9YNXsBXlDty9IYY="; + sha256 = "sha256-mQUoJ4HO0/mXabDkWnBey1AZLKFiIwBwezMC6hZ9yIM="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/audio/libopenmpt/default.nix b/pkgs/development/libraries/audio/libopenmpt/default.nix index 9b5839d1d122a..f058be4b645d8 100644 --- a/pkgs/development/libraries/audio/libopenmpt/default.nix +++ b/pkgs/development/libraries/audio/libopenmpt/default.nix @@ -16,13 +16,13 @@ stdenv.mkDerivation rec { pname = "libopenmpt"; - version = "0.6.10"; + version = "0.7.1"; outputs = [ "out" "dev" "bin" ]; src = fetchurl { url = "https://lib.openmpt.org/files/libopenmpt/src/libopenmpt-${version}+release.autotools.tar.gz"; - sha256 = "wlvo3A2sI87AJUh+WPGV5NFPfZSu3dX+RrIcBPHOJ3Q="; + hash = "sha256-vxddJkSLsTP3RxTzqIWecAC5NSL7NXdVnf/ANxYZEPk="; }; enableParallelBuilding = true; @@ -39,9 +39,13 @@ stdenv.mkDerivation rec { portaudio libsndfile flac - ] ++ lib.optional usePulseAudio libpulseaudio; + ] ++ lib.optionals usePulseAudio [ + libpulseaudio + ]; - configureFlags = lib.optional (!usePulseAudio) "--without-pulseaudio"; + configureFlags = [ + (lib.strings.withFeature usePulseAudio "pulseaudio") + ]; doCheck = stdenv.buildPlatform.canExecute stdenv.hostPlatform; diff --git a/pkgs/development/libraries/audio/roc-toolkit/default.nix b/pkgs/development/libraries/audio/roc-toolkit/default.nix index 7b3dfee253de5..878f499ccbbb2 100644 --- a/pkgs/development/libraries/audio/roc-toolkit/default.nix +++ b/pkgs/development/libraries/audio/roc-toolkit/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { pname = "roc-toolkit"; - version = "0.2.3"; + version = "0.2.4"; outputs = [ "out" "dev" ]; @@ -29,7 +29,7 @@ stdenv.mkDerivation rec { owner = "roc-streaming"; repo = "roc-toolkit"; rev = "v${version}"; - hash = "sha256-wwcc2r1hrM9zryMJp+DOifSh0g6T/gdZJMpVdhqhjR8="; + hash = "sha256-x4+/MIFKcos9xWhvSNWdsUQA2oLiyYS0MJE60HY/3hQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/audiofile/default.nix b/pkgs/development/libraries/audiofile/default.nix index 7366c6e36377a..c6d656388d458 100644 --- a/pkgs/development/libraries/audiofile/default.nix +++ b/pkgs/development/libraries/audiofile/default.nix @@ -28,9 +28,6 @@ stdenv.mkDerivation rec { outputs = [ "out" "dev" "man" ]; - # fix build with gcc9 - NIX_CFLAGS_LINK = lib.optional (stdenv.system == "i686-linux") "-lgcc"; - # Even when statically linking, libstdc++.la is put in dependency_libs here, # and hence libstdc++.so passed to the linker, just pass -lstdc++ and let the # compiler do what it does best. (libaudiofile.la is a generated file, so we diff --git a/pkgs/development/libraries/c-ares/default.nix b/pkgs/development/libraries/c-ares/default.nix index 9c024211a71bd..a48b6f4fa7f53 100644 --- a/pkgs/development/libraries/c-ares/default.nix +++ b/pkgs/development/libraries/c-ares/default.nix @@ -13,14 +13,15 @@ stdenv.mkDerivation rec { pname = "c-ares"; - version = "1.19.0"; - outputs = [ "out" "dev" ]; + version = "1.19.1"; src = fetchurl { url = "https://c-ares.haxx.se/download/${pname}-${version}.tar.gz"; - sha256 = "sha256-v866N+I/1TEpOCkALKwEAe9JptxVkj9/kiNlhbetHdM="; + sha256 = "sha256-MhcAOZty7Q4DfQB0xinndB9rLsLdqSlWq+PpZx0+Jo4="; }; + outputs = [ "out" "dev" "man" ]; + nativeBuildInputs = lib.optionals withCMake [ cmake ]; cmakeFlags = [] ++ lib.optionals stdenv.hostPlatform.isStatic [ diff --git a/pkgs/development/libraries/cairo/default.nix b/pkgs/development/libraries/cairo/default.nix index 70a59bfa0db70..f36adbda8920f 100644 --- a/pkgs/development/libraries/cairo/default.nix +++ b/pkgs/development/libraries/cairo/default.nix @@ -63,6 +63,14 @@ in { sha256 = "sha256-8G98nsPz3MLEWPDX9F0jKgXC4hC4NNdFQLSpmW3ay2s="; }) + # Fix clang build failures on newer LLVM versions + # Upstream PR: https://gitlab.freedesktop.org/cairo/cairo/-/merge_requests/119 + (fetchpatch { + name = "fix-types.patch"; + url = "https://gitlab.freedesktop.org/cairo/cairo/-/commit/38e486b34d435130f2fb38c429e6016c3c82cd53.patch"; + sha256 = "sha256-vmluOJSuTRiQHmbBBVCxOIkZ0O0ZEo0J4mgrUPn0SIo="; + }) + # Fix unexpected color addition on grayscale images (usually text). # Upstream fix: https://gitlab.freedesktop.org/cairo/cairo/-/merge_requests/114 # Can be removed after 1.18 release @@ -71,6 +79,7 @@ in { url = "https://gitlab.freedesktop.org/cairo/cairo/-/commit/4f4d89506f58a64b4829b1bb239bab9e46d63727.diff"; sha256 = "sha256-mbTg67e7APfdELsuMAgXdY3xokWbGtHF7VDD5UyYqKM="; }) + ]; outputs = [ "out" "dev" "devdoc" ]; diff --git a/pkgs/development/libraries/cista/default.nix b/pkgs/development/libraries/cista/default.nix index 770e13ff85c2a..862a74c596a32 100644 --- a/pkgs/development/libraries/cista/default.nix +++ b/pkgs/development/libraries/cista/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "cista"; - version = "0.13"; + version = "0.14"; src = fetchFromGitHub { owner = "felixguendling"; repo = pname; rev = "v${version}"; - sha256 = "sha256-dQOVmKRXfApN0QRx/PmLVzeCGppFJBnNWIOoLbDbrds="; + sha256 = "sha256-E2B+dNFk0ssKhT9dULNFzpa8auRQ9Q0czuUjX6hxWPw="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/cmocka/default.nix b/pkgs/development/libraries/cmocka/default.nix index 5eefba8eb478a..6c88d1baebfa8 100644 --- a/pkgs/development/libraries/cmocka/default.nix +++ b/pkgs/development/libraries/cmocka/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { pname = "cmocka"; majorVersion = "1.1"; - version = "${majorVersion}.6"; + version = "${majorVersion}.7"; src = fetchurl { url = "https://cmocka.org/files/${majorVersion}/cmocka-${version}.tar.xz"; - sha256 = "0xksffx1w3pzm18ynf28cx8scrhylcbz43s1rgkkdqnyil1q6cjv"; + sha256 = "sha256-gQVw6wuNZIBDMfgrKf9Hx5DOnNaxY+mNR6SAcEfsrYI="; }; patches = [ @@ -52,6 +52,5 @@ stdenv.mkDerivation rec { license = licenses.asl20; platforms = platforms.all; maintainers = with maintainers; [ kragniz rasendubi ]; - broken = stdenv.hostPlatform.isStatic; # See https://github.com/NixOS/nixpkgs/issues/213623 }; } diff --git a/pkgs/development/libraries/composable_kernel/default.nix b/pkgs/development/libraries/composable_kernel/default.nix index e00af9a9755ee..531d5d66f3ffb 100644 --- a/pkgs/development/libraries/composable_kernel/default.nix +++ b/pkgs/development/libraries/composable_kernel/default.nix @@ -2,7 +2,6 @@ , stdenv , fetchFromGitHub , unstableGitUpdater -, runCommand , cmake , rocm-cmake , hip @@ -88,9 +87,6 @@ let }; }); - ckProfiler = runCommand "ckProfiler" { preferLocalBuild = true; } '' - cp -a ${ck}/bin/ckProfiler $out - ''; in stdenv.mkDerivation { inherit (ck) pname version outputs src passthru requiredSystemFeatures meta; @@ -102,8 +98,7 @@ in stdenv.mkDerivation { installPhase = '' runHook preInstall - mkdir -p $out/bin - cp -as ${ckProfiler} $out/bin/ckProfiler + mkdir -p $out cp -an ${ck}/* $out '' + lib.optionalString buildTests '' cp -a ${ck.test} $test diff --git a/pkgs/development/libraries/cpp-netlib/default.nix b/pkgs/development/libraries/cpp-netlib/default.nix index 1effce915515b..af57944a453d6 100644 --- a/pkgs/development/libraries/cpp-netlib/default.nix +++ b/pkgs/development/libraries/cpp-netlib/default.nix @@ -17,6 +17,9 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DCPP-NETLIB_BUILD_SHARED_LIBS=ON" + # fatal error: 'boost/asio/stream_socket_service.hpp' file not found + "-DCPP-NETLIB_BUILD_EXAMPLES=OFF" + "-DCPP-NETLIB_BUILD_TESTS=OFF" ]; # Most tests make network GET requests to various websites diff --git a/pkgs/development/libraries/dav1d/default.nix b/pkgs/development/libraries/dav1d/default.nix index 54bd9a1095be5..d456f1d43ba67 100644 --- a/pkgs/development/libraries/dav1d/default.nix +++ b/pkgs/development/libraries/dav1d/default.nix @@ -10,15 +10,17 @@ assert useVulkan -> withExamples; stdenv.mkDerivation rec { pname = "dav1d"; - version = "1.1.0"; + version = "1.2.0"; src = fetchFromGitHub { owner = "videolan"; repo = pname; rev = version; - hash = "sha256-1k6TsaXI9nwrBXTj3hncblkQuN/bvDudWDCsx4E4iwY="; + hash = "sha256-Y9wqa6lIs0eKT+q+95gjzfHIc3pglXzLNaDjsWy1gok="; }; + outputs = [ "out" "dev" ]; + nativeBuildInputs = [ meson ninja nasm pkg-config ]; # TODO: doxygen (currently only HTML and not build by default). buildInputs = [ xxHash ] diff --git a/pkgs/development/libraries/dbus/default.nix b/pkgs/development/libraries/dbus/default.nix index f984f33103001..52928e1005fff 100644 --- a/pkgs/development/libraries/dbus/default.nix +++ b/pkgs/development/libraries/dbus/default.nix @@ -67,6 +67,8 @@ stdenv.mkDerivation rec { ++ lib.optionals stdenv.isLinux [ audit libapparmor ]; # ToDo: optional selinux? + __darwinAllowLocalNetworking = true; + configureFlags = [ "--enable-user-session" "--enable-xml-docs" diff --git a/pkgs/development/libraries/directx-headers/default.nix b/pkgs/development/libraries/directx-headers/default.nix index 233b96304a02c..946385ab0917d 100644 --- a/pkgs/development/libraries/directx-headers/default.nix +++ b/pkgs/development/libraries/directx-headers/default.nix @@ -1,13 +1,13 @@ { lib, stdenv, fetchFromGitHub, meson, ninja }: stdenv.mkDerivation rec { pname = "directx-headers"; - version = "1.610.0"; + version = "1.610.2"; src = fetchFromGitHub { owner = "microsoft"; repo = "DirectX-Headers"; rev = "v${version}"; - hash = "sha256-lPYXAMFSyU3FopWdE6dDRWD6sVKcjxDVsTbgej/T2sk="; + hash = "sha256-se+/TgqKdatTnBlHcBC1K4aOGGfPEW+E1efpP34+xc0="; }; nativeBuildInputs = [ meson ninja ]; diff --git a/pkgs/development/libraries/egl-wayland/default.nix b/pkgs/development/libraries/egl-wayland/default.nix index d3ff8a8af0fd1..66e05dc9af117 100644 --- a/pkgs/development/libraries/egl-wayland/default.nix +++ b/pkgs/development/libraries/egl-wayland/default.nix @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { pname = "egl-wayland"; - version = "1.1.11"; + version = "1.1.12"; outputs = [ "out" "dev" ]; @@ -24,18 +24,9 @@ stdenv.mkDerivation rec { owner = "Nvidia"; repo = pname; rev = version; - sha256 = "sha256-xb0d8spr4GoGZl/8C8BoPMPN7PAlzuQV11tEJbOQQ4U="; + hash = "sha256-KxlUuoj2HJhkqkIX+Pic/0+36g/N3qfAAlnvYO2Y6uQ="; }; - patches = [ - # remove after next update - # https://github.com/NVIDIA/egl-wayland/pull/79 - (fetchpatch { - url = "https://github.com/NVIDIA/egl-wayland/commit/13737c6af4c0a7cfef5ec9013a4382bbeb7b495c.patch"; - hash = "sha256-EEqI6iJb+uv0HkhnauYNxSzny4YapTm73PLgK8A9Km8="; - }) - ]; - postPatch = '' # Declares an includedir but doesn't install any headers # CMake's `pkg_check_modules(NAME wayland-eglstream IMPORTED_TARGET)` considers this an error diff --git a/pkgs/development/libraries/embree/default.nix b/pkgs/development/libraries/embree/default.nix index 552859cd4a5d9..419572f3ff160 100644 --- a/pkgs/development/libraries/embree/default.nix +++ b/pkgs/development/libraries/embree/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchFromGitHub, cmake, pkg-config, ispc, tbb, glfw, +{ stdenv, lib, fetchFromGitHub, fetchpatch, cmake, pkg-config, ispc, tbb, glfw, openimageio, libjpeg, libpng, libpthreadstubs, libX11, glib }: stdenv.mkDerivation rec { @@ -12,6 +12,14 @@ stdenv.mkDerivation rec { sha256 = "sha256-tfM4SGOFVBG0pQK9B/iN2xDaW3yjefnTtsoUad75m80="; }; + patches = [ + (fetchpatch { + name = "fixed-compilation-issues-for-arm-aarch64-processor-under-linux.patch"; + url = "https://github.com/embree/embree/commit/82ca6b5ccb7abe0403a658a0e079926478f04cb1.patch"; + hash = "sha256-l9S4PBk+yQUypQ22l05daD0ruouZKE4VHkGvzKxkH4o="; + }) + ]; + postPatch = '' # Fix duplicate /nix/store/.../nix/store/.../ paths sed -i "s|SET(EMBREE_ROOT_DIR .*)|set(EMBREE_ROOT_DIR $out)|" \ @@ -28,7 +36,6 @@ stdenv.mkDerivation rec { "-DTBB_INCLUDE_DIR=${tbb.dev}/include" ]; - nativeBuildInputs = [ ispc pkg-config cmake ]; buildInputs = [ tbb glfw openimageio libjpeg libpng libX11 libpthreadstubs ] ++ lib.optionals stdenv.isDarwin [ glib ]; @@ -39,6 +46,5 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ hodapp gebner ]; license = licenses.asl20; platforms = platforms.unix; - badPlatforms = [ "aarch64-linux" ]; }; } diff --git a/pkgs/development/libraries/faudio/default.nix b/pkgs/development/libraries/faudio/default.nix index 580d7399a961b..35da314b340a2 100644 --- a/pkgs/development/libraries/faudio/default.nix +++ b/pkgs/development/libraries/faudio/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "faudio"; - version = "23.05"; + version = "23.06"; src = fetchFromGitHub { owner = "FNA-XNA"; repo = "FAudio"; rev = version; - sha256 = "sha256-uZSKbLQ36Kw6useAKyDoxLKD1xtKbigq/ejWErxvkcE="; + sha256 = "sha256-V5t9YliyXxoWNnKwp3TTOCyCIzpcyg1X4DaI0WFlfeQ="; }; nativeBuildInputs = [cmake]; diff --git a/pkgs/development/libraries/ffmpeg/4.nix b/pkgs/development/libraries/ffmpeg/4.nix index 7882c19da8f3f..905e93de7a7fd 100644 --- a/pkgs/development/libraries/ffmpeg/4.nix +++ b/pkgs/development/libraries/ffmpeg/4.nix @@ -1,4 +1,11 @@ import ./generic.nix rec { - version = "4.4.3"; - sha256 = "sha256-zZDzG1hD+0AHqElzeGR6OVm+H5wqtdktloSPmEUzT/c="; + version = "4.4.4"; + sha256 = "sha256-Q8bkuF/1uJfqttJJoObnnLX3BEduv+qxsvOrVhMvRjA="; + extraPatches = [ + { + name = "libsvtav1-1.5.0-compat-compressed_ten_bit_format.patch"; + url = "https://git.ffmpeg.org/gitweb/ffmpeg.git/patch/031f1561cd286596cdb374da32f8aa816ce3b135"; + hash = "sha256-mSnmAkoNikDpxcN+A/hpB7mUbbtcMvm4tG6gZFuroe8="; + } + ]; } diff --git a/pkgs/development/libraries/ffmpeg/5.nix b/pkgs/development/libraries/ffmpeg/5.nix index 0aa176bb8d241..dcfe033f040fa 100644 --- a/pkgs/development/libraries/ffmpeg/5.nix +++ b/pkgs/development/libraries/ffmpeg/5.nix @@ -1,4 +1,21 @@ import ./generic.nix rec { version = "5.1.3"; sha256 = "sha256-twfJvANLQGO7TiyHPMPqApfHLFUlOGZTTIIGEnjyvuE="; + extraPatches = [ + { + name = "libsvtav1-1.5.0-compat-compressed_ten_bit_format.patch"; + url = "https://git.ffmpeg.org/gitweb/ffmpeg.git/patch/031f1561cd286596cdb374da32f8aa816ce3b135"; + hash = "sha256-mSnmAkoNikDpxcN+A/hpB7mUbbtcMvm4tG6gZFuroe8="; + } + { + name = "libsvtav1-1.5.0-compat-vbv_bufsize.patch"; + url = "https://git.ffmpeg.org/gitweb/ffmpeg.git/patch/1c6fd7d756afe0f8b7df14dbf7a95df275f8f5ee"; + hash = "sha256-v9Viyo12QfZpbcVqd1aHgLl/DgSkdE9F1kr6afTGPik="; + } + { + name = "libsvtav1-1.5.0-compat-maximum_buffer_size_ms-conditional.patch"; + url = "https://git.ffmpeg.org/gitweb/ffmpeg.git/patch/96748ac54f998ba6fe22802799c16b4eba8d4ccc"; + hash = "sha256-Z5HSe7YpryYGHD3BYXejAhqR4EPnmfTGyccxNvU3AaU="; + } + ]; } diff --git a/pkgs/development/libraries/ffmpeg/generic.nix b/pkgs/development/libraries/ffmpeg/generic.nix index 92772c419c1e7..12e59c939afee 100644 --- a/pkgs/development/libraries/ffmpeg/generic.nix +++ b/pkgs/development/libraries/ffmpeg/generic.nix @@ -126,7 +126,6 @@ , withMultithread ? true # Multithreading via pthreads/win32 threads , withNetwork ? withHeadlessDeps # Network support , withPixelutils ? withHeadlessDeps # Pixel utils in libavutil -, withLTO ? false # build with link-time optimization /* * Program options */ @@ -384,7 +383,6 @@ stdenv.mkDerivation (finalAttrs: { (enableFeature withSmallBuild "small") (enableFeature withRuntimeCPUDetection "runtime-cpudetect") - (enableFeature withLTO "lto") (enableFeature withGrayscale "gray") (enableFeature withSwscaleAlpha "swscale-alpha") (enableFeature withHardcodedTables "hardcoded-tables") diff --git a/pkgs/development/libraries/fontconfig/default.nix b/pkgs/development/libraries/fontconfig/default.nix index 6c0b8899a3f4a..eadb30352e9a9 100644 --- a/pkgs/development/libraries/fontconfig/default.nix +++ b/pkgs/development/libraries/fontconfig/default.nix @@ -1,6 +1,7 @@ { stdenv , lib , fetchurl +, fetchpatch2 , pkg-config , python3 , freetype @@ -14,15 +15,25 @@ stdenv.mkDerivation rec { pname = "fontconfig"; - version = "2.14.0"; + version = "2.14.2"; outputs = [ "bin" "dev" "lib" "out" ]; # $out contains all the config src = fetchurl { url = "https://www.freedesktop.org/software/fontconfig/release/${pname}-${version}.tar.xz"; - sha256 = "3L64TJx0u/2xM9U1/hx77cnyIhqNrzkUuYTETFIOm6w="; + hash = "sha256-26aVtXvOFQI9LO7e+CBiwrkl5R9dTMSu9zbPE/YKRos="; }; + patches = [ + # Provide 11-lcdfilter-none.conf for NixOS module + # https://gitlab.freedesktop.org/fontconfig/fontconfig/-/merge_requests/268 + (fetchpatch2 { + name = "add-optional-11-lcdfilter-none-configuration.patch"; + url = "https://gitlab.freedesktop.org/fontconfig/fontconfig/-/commit/c2666a6d9a6ed18b1bfcef8176e25f62993e24db.patch"; + hash = "sha256-UBzkxy3uxFO+g0aQtPnBZv7OncgQdinwzNwWS8ngjcE="; + }) + ]; + nativeBuildInputs = [ autoreconfHook gperf diff --git a/pkgs/development/libraries/fribidi/default.nix b/pkgs/development/libraries/fribidi/default.nix index 0c8c4c23be5ad..613725a2672e2 100644 --- a/pkgs/development/libraries/fribidi/default.nix +++ b/pkgs/development/libraries/fribidi/default.nix @@ -10,14 +10,14 @@ stdenv.mkDerivation rec { pname = "fribidi"; - version = "1.0.12"; + version = "1.0.13"; outputs = [ "out" "dev" "devdoc" ]; # NOTE: Only URL tarball has "Have pre-generated man pages: true", which works-around upstream usage of some rare ancient `c2man` fossil application. src = fetchurl { url = "https://github.com/fribidi/fribidi/releases/download/v${version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-DNIz+X/IxnuzrCfOhEDe9dP/rPUWdluRwsxlRJgpNJU="; + sha256 = "sha256-f6FsgMgb1iL3sZjTE1baE5zDGKY/x3YSF69BMJA/VKI="; }; postPatch = '' diff --git a/pkgs/development/libraries/ftxui/default.nix b/pkgs/development/libraries/ftxui/default.nix index f3be2b9c272e5..e9ae2524ca02d 100644 --- a/pkgs/development/libraries/ftxui/default.nix +++ b/pkgs/development/libraries/ftxui/default.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { pname = "ftxui"; - version = "4.1.0"; + version = "4.1.1"; src = fetchFromGitHub { owner = "ArthurSonzogni"; repo = "ftxui"; rev = "v${version}"; - sha256 = "sha256-6uPlJXuWcTUnpk+xe6EWDYvDLsfy7hGkEMO/2j3Dz0o="; + sha256 = "sha256-qFgCLV7sgGxlL18sThqpl+vyXL68GXcbYqMG7mXhsB4="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/gettext/default.nix b/pkgs/development/libraries/gettext/default.nix index 5443f1eeac0d5..a8e8fde96f630 100644 --- a/pkgs/development/libraries/gettext/default.nix +++ b/pkgs/development/libraries/gettext/default.nix @@ -9,11 +9,11 @@ stdenv.mkDerivation rec { pname = "gettext"; - version = "0.21"; + version = "0.21.1"; src = fetchurl { url = "mirror://gnu/gettext/${pname}-${version}.tar.gz"; - sha256 = "04kbg1sx0ncfrsbr85ggjslqkzzb243fcw9nyh3rrv1a22ihszf7"; + sha256 = "sha256-6MNlDh2M7odcTzVWQjgsHfgwWL1aEe6FVcDPJ21kbUU="; }; patches = [ ./absolute-paths.diff @@ -47,14 +47,6 @@ stdenv.mkDerivation rec { '' + lib.optionalString stdenv.hostPlatform.isCygwin '' sed -i -e "s/\(cldr_plurals_LDADD = \)/\\1..\/gnulib-lib\/libxml_rpl.la /" gettext-tools/src/Makefile.in sed -i -e "s/\(libgettextsrc_la_LDFLAGS = \)/\\1..\/gnulib-lib\/libxml_rpl.la /" gettext-tools/src/Makefile.in - '' + - # This change to gettext's vendored copy of gnulib is already - # merged upstream; we can drop this patch on the next version - # bump. It must be applied twice because gettext vendors gnulib - # not once, but twice! - '' - patch -p2 -d gettext-tools/gnulib-lib/ < ${gnulib.passthru.longdouble-redirect-patch} - patch -p2 -d gettext-tools/libgrep/ < ${gnulib.passthru.longdouble-redirect-patch} ''; strictDeps = true; diff --git a/pkgs/development/libraries/google-cloud-cpp/default.nix b/pkgs/development/libraries/google-cloud-cpp/default.nix index 1e5271d47709c..cb626ffac968c 100644 --- a/pkgs/development/libraries/google-cloud-cpp/default.nix +++ b/pkgs/development/libraries/google-cloud-cpp/default.nix @@ -68,6 +68,9 @@ stdenv.mkDerivation rec { protobuf ]; + # https://hydra.nixos.org/build/222679737/nixlog/3/tail + NIX_CFLAGS_COMPILE = if stdenv.isAarch64 then "-Wno-error=maybe-uninitialized" else null; + doInstallCheck = true; preInstallCheck = @@ -122,10 +125,13 @@ stdenv.mkDerivation rec { "-DGOOGLE_CLOUD_CPP_ENABLE=${lib.concatStringsSep ";" apis}" ]; + requiredSystemFeatures = [ "big-parallel" ]; + meta = with lib; { license = with licenses; [ asl20 ]; homepage = "https://github.com/googleapis/google-cloud-cpp"; description = "C++ Idiomatic Clients for Google Cloud Platform services"; + platforms = [ "x86_64-linux" "aarch64-linux" ]; maintainers = with maintainers; [ cpcloud ]; }; } diff --git a/pkgs/development/libraries/gstreamer/bad/default.nix b/pkgs/development/libraries/gstreamer/bad/default.nix index bb1acbe6fdb3e..ccfbd892a97d8 100644 --- a/pkgs/development/libraries/gstreamer/bad/default.nix +++ b/pkgs/development/libraries/gstreamer/bad/default.nix @@ -23,7 +23,6 @@ , lcms2 , libnice , webrtc-audio-processing -, webrtc-audio-processing_1 , lilv , lv2 , serd @@ -39,7 +38,6 @@ , bluez , chromaprint , curl -, directfb , fdk_aac , flite , gsm @@ -90,6 +88,7 @@ , vo-aacenc , libfreeaptx , zxing-cpp +, usrsctp , VideoToolbox , AudioToolbox , AVFoundation @@ -104,17 +103,18 @@ , microdnsSupport ? false # Checks meson.is_cross_build(), so even canExecute isn't enough. , enableDocumentation ? stdenv.hostPlatform == stdenv.buildPlatform, hotdoc +, guiSupport ? true, directfb }: stdenv.mkDerivation rec { pname = "gst-plugins-bad"; - version = "1.22.2"; + version = "1.22.3"; outputs = [ "out" "dev" ]; src = fetchurl { url = "https://gstreamer.freedesktop.org/src/${pname}/${pname}-${version}.tar.xz"; - hash = "sha256-PY+vHONALIU1zjqMThpslg5LVlXb2mtVlD25rHkCLQ8="; + hash = "sha256-4XmP7i2GEn8GN0gcYH+YMpO/D9garXClx7RyBa82Idg="; }; patches = [ @@ -165,6 +165,7 @@ stdenv.mkDerivation rec { libde265 libdvdnav libdvdread + libnice qrencode libsndfile libusb1 @@ -182,9 +183,6 @@ stdenv.mkDerivation rec { libwebp xvidcore gnutls - libGL - libGLU - gtk3 game-music-emu openssl libxml2 @@ -193,6 +191,7 @@ stdenv.mkDerivation rec { vo-aacenc libfreeaptx zxing-cpp + usrsctp ] ++ lib.optionals enableZbar [ zbar ] ++ lib.optionals faacSupport [ @@ -218,11 +217,9 @@ stdenv.mkDerivation rec { mjpegtools chromaprint - directfb flite libdrm libgudev - libnice sbc spandsp @@ -236,6 +233,13 @@ stdenv.mkDerivation rec { serd sord sratom + + libGL + libGLU + ] ++ lib.optionals guiSupport [ + gtk3 + ] ++ lib.optionals (stdenv.isLinux && guiSupport) [ + directfb ] ++ lib.optionals stdenv.isDarwin [ # For unknown reasons the order is important, e.g. if # VideoToolbox is last, we get: @@ -276,7 +280,6 @@ stdenv.mkDerivation rec { "-Dmusepack=disabled" "-Dopenni2=disabled" # not packaged in nixpkgs as of writing "-Dopensles=disabled" # not packaged in nixpkgs as of writing - "-Dsctp=disabled" # required `usrsctp` library not packaged in nixpkgs as of writing "-Dsvthevcenc=disabled" # required `SvtHevcEnc` library not packaged in nixpkgs as of writing "-Dteletext=disabled" # required `zvbi` library not packaged in nixpkgs as of writing "-Dtinyalsa=disabled" # not packaged in nixpkgs as of writing @@ -297,10 +300,11 @@ stdenv.mkDerivation rec { "-Ddoc=disabled" # needs gstcuda to be enabled which is Linux-only "-Dnvcodec=disabled" # Linux-only "-Dva=disabled" # see comment on `libva` in `buildInputs` + ] ++ lib.optionals (!stdenv.isLinux || !guiSupport) [ + "-Ddirectfb=disabled" ] ++ lib.optionals stdenv.isDarwin [ "-Dchromaprint=disabled" - "-Ddirectfb=disabled" "-Dflite=disabled" "-Dkms=disabled" # renders to libdrm output "-Dlv2=disabled" @@ -311,7 +315,6 @@ stdenv.mkDerivation rec { "-Duvch264=disabled" # requires gudev "-Dv4l2codecs=disabled" # requires gudev "-Dladspa=disabled" # requires lrdf - "-Dwebrtc=disabled" # requires libnice, which as of writing doesn't work on Darwin in nixpkgs "-Dwildmidi=disabled" # see dependencies above ] ++ lib.optionals (!stdenv.isLinux || !stdenv.isx86_64) [ "-Dqsv=disabled" # Linux (and Windows) x86 only @@ -361,6 +364,6 @@ stdenv.mkDerivation rec { ''; license = if enableGplPlugins then licenses.gpl2Plus else licenses.lgpl2Plus; platforms = platforms.linux ++ platforms.darwin; - maintainers = with maintainers; [ matthewbauer ]; + maintainers = with maintainers; [ matthewbauer lilyinstarlight ]; }; } diff --git a/pkgs/development/libraries/gstreamer/base/default.nix b/pkgs/development/libraries/gstreamer/base/default.nix index 652f949f72261..5c70b225e5269 100644 --- a/pkgs/development/libraries/gstreamer/base/default.nix +++ b/pkgs/development/libraries/gstreamer/base/default.nix @@ -45,7 +45,7 @@ stdenv.mkDerivation (finalAttrs: { pname = "gst-plugins-base"; - version = "1.22.2"; + version = "1.22.3"; outputs = [ "out" "dev" ]; @@ -53,7 +53,7 @@ stdenv.mkDerivation (finalAttrs: { inherit (finalAttrs) pname version; in fetchurl { url = "https://gstreamer.freedesktop.org/src/${pname}/${pname}-${version}.tar.xz"; - hash = "sha256-62USDE7nm3oVPDwZctXAFYwhUYd8xR7Hclu6V0lnnUk="; + hash = "sha256-HFliiaDUIHOAIz66jDapMsTRrOuhmTKTfZtXwkzvifM="; }; strictDeps = true; @@ -87,9 +87,9 @@ stdenv.mkDerivation (finalAttrs: { libpng libjpeg tremor - libGL pango ] ++ lib.optionals (!stdenv.isDarwin) [ + libGL libvisual ] ++ lib.optionals stdenv.isDarwin [ OpenGL @@ -168,6 +168,6 @@ stdenv.mkDerivation (finalAttrs: { "gstreamer-video-1.0" ]; platforms = platforms.unix; - maintainers = with maintainers; [ matthewbauer ]; + maintainers = with maintainers; [ matthewbauer lilyinstarlight ]; }; }) diff --git a/pkgs/development/libraries/gstreamer/core/default.nix b/pkgs/development/libraries/gstreamer/core/default.nix index 88101ceea41d1..e6c9d2222d182 100644 --- a/pkgs/development/libraries/gstreamer/core/default.nix +++ b/pkgs/development/libraries/gstreamer/core/default.nix @@ -24,7 +24,7 @@ stdenv.mkDerivation (finalAttrs: { pname = "gstreamer"; - version = "1.22.2"; + version = "1.22.3"; outputs = [ "bin" @@ -36,7 +36,7 @@ stdenv.mkDerivation (finalAttrs: { inherit (finalAttrs) pname version; in fetchurl { url = "https://gstreamer.freedesktop.org/src/${pname}/${pname}-${version}.tar.xz"; - hash = "sha256-sq/nNgOSHGCLpIlp27fXQ3dnRL/l2AWeziQRN7f4jiE="; + hash = "sha256-n/6rlQU/n2mV6zs9oiXojyHBKc1g2gAtP3ldtw1tWXQ="; }; depsBuildBuild = [ @@ -120,6 +120,6 @@ stdenv.mkDerivation (finalAttrs: { "gstreamer-controller-1.0" ]; platforms = platforms.unix; - maintainers = with maintainers; [ ttuegel matthewbauer ]; + maintainers = with maintainers; [ ttuegel matthewbauer lilyinstarlight ]; }; }) diff --git a/pkgs/development/libraries/gstreamer/default.nix b/pkgs/development/libraries/gstreamer/default.nix index 6207cf4fc5665..662009005e36b 100644 --- a/pkgs/development/libraries/gstreamer/default.nix +++ b/pkgs/development/libraries/gstreamer/default.nix @@ -48,5 +48,5 @@ ipu6-camera-hal = ipu6ep-camera-hal; }; - # note: gst-python is in ./python/default.nix - called under pythonPackages + # note: gst-python is in ../../python-modules/gst-python - called under python3Packages } diff --git a/pkgs/development/libraries/gstreamer/devtools/default.nix b/pkgs/development/libraries/gstreamer/devtools/default.nix index 471de787e197d..8837a0a0e93d7 100644 --- a/pkgs/development/libraries/gstreamer/devtools/default.nix +++ b/pkgs/development/libraries/gstreamer/devtools/default.nix @@ -17,11 +17,11 @@ stdenv.mkDerivation rec { pname = "gst-devtools"; - version = "1.22.2"; + version = "1.22.3"; src = fetchurl { url = "https://gstreamer.freedesktop.org/src/${pname}/${pname}-${version}.tar.xz"; - hash = "sha256-62JybT4nqHgjaaJP1jZKiIXtJGKzu9qwkd/8gTnuBtg="; + hash = "sha256-RGrJxC1QLL/ZCBc3zBuFOzwfUNt3ynzNAa6hD2h1UME="; }; outputs = [ @@ -65,5 +65,6 @@ stdenv.mkDerivation rec { homepage = "https://gstreamer.freedesktop.org"; license = licenses.lgpl2Plus; platforms = platforms.unix; + maintainers = with maintainers; [ lilyinstarlight ]; }; } diff --git a/pkgs/development/libraries/gstreamer/ges/default.nix b/pkgs/development/libraries/gstreamer/ges/default.nix index 8beedddeeebba..e5f8ed02061a8 100644 --- a/pkgs/development/libraries/gstreamer/ges/default.nix +++ b/pkgs/development/libraries/gstreamer/ges/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { pname = "gst-editing-services"; - version = "1.22.2"; + version = "1.22.3"; outputs = [ "out" @@ -27,7 +27,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://gstreamer.freedesktop.org/src/${pname}/${pname}-${version}.tar.xz"; - hash = "sha256-RTsUZPw4V94mmnyw69lmr+Ahcdl772cqC4oKbUPgzr8="; + hash = "sha256-FaW85iUJseEl6FoJ7EHzIcD1SSZLUETACV/PstXAzqI="; }; nativeBuildInputs = [ @@ -69,5 +69,6 @@ stdenv.mkDerivation rec { homepage = "https://gstreamer.freedesktop.org"; license = licenses.lgpl2Plus; platforms = platforms.unix; + maintainers = with maintainers; [ lilyinstarlight ]; }; } diff --git a/pkgs/development/libraries/gstreamer/good/default.nix b/pkgs/development/libraries/gstreamer/good/default.nix index c8efbbfd874c3..ef6143b36ec90 100644 --- a/pkgs/development/libraries/gstreamer/good/default.nix +++ b/pkgs/development/libraries/gstreamer/good/default.nix @@ -52,13 +52,13 @@ assert raspiCameraSupport -> (stdenv.isLinux && stdenv.isAarch64); stdenv.mkDerivation rec { pname = "gst-plugins-good"; - version = "1.22.2"; + version = "1.22.3"; outputs = [ "out" "dev" ]; src = fetchurl { url = "https://gstreamer.freedesktop.org/src/${pname}/${pname}-${version}.tar.xz"; - hash = "sha256-fIzFlCXysjL2DKfRPlbt1hXaT3Eec90Bp8/6Rua8DN0="; + hash = "sha256-r4EVSzou8/TS/ro5XyVpb+6m/RPsYsktPHqXNHBxAnM="; }; strictDeps = true; @@ -190,6 +190,6 @@ stdenv.mkDerivation rec { ''; license = licenses.lgpl2Plus; platforms = platforms.linux ++ platforms.darwin; - maintainers = with maintainers; [ matthewbauer ]; + maintainers = with maintainers; [ matthewbauer lilyinstarlight ]; }; } diff --git a/pkgs/development/libraries/gstreamer/libav/default.nix b/pkgs/development/libraries/gstreamer/libav/default.nix index b51a103c0855e..a1271fab91f4b 100644 --- a/pkgs/development/libraries/gstreamer/libav/default.nix +++ b/pkgs/development/libraries/gstreamer/libav/default.nix @@ -18,11 +18,11 @@ stdenv.mkDerivation rec { pname = "gst-libav"; - version = "1.22.2"; + version = "1.22.3"; src = fetchurl { url = "https://gstreamer.freedesktop.org/src/${pname}/${pname}-${version}.tar.xz"; - hash = "sha256-/Kr5h4/o87yCMX7xOhVYgky2jfH4loxnl/VWxeM7z/0="; + hash = "sha256-LsXIBYCLQ3Gn4ysdoCAqHIprNrbOkFCAv1w0CX0SqSM="; }; outputs = [ "out" "dev" ]; @@ -57,5 +57,6 @@ stdenv.mkDerivation rec { homepage = "https://gstreamer.freedesktop.org"; license = licenses.lgpl2Plus; platforms = platforms.unix; + maintainers = with maintainers; [ lilyinstarlight ]; }; } diff --git a/pkgs/development/libraries/gstreamer/rs/default.nix b/pkgs/development/libraries/gstreamer/rs/default.nix index 5ad11cef9dcdd..6f67ee6327ce6 100644 --- a/pkgs/development/libraries/gstreamer/rs/default.nix +++ b/pkgs/development/libraries/gstreamer/rs/default.nix @@ -1,7 +1,6 @@ { lib , stdenv , fetchFromGitLab -, fetchpatch , writeText , rustPlatform , meson @@ -27,11 +26,14 @@ , Security , gst-plugins-good , nix-update-script +# specifies a limited subset of plugins to build (the default `null` means all plugins supported on the stdenv platform) +, plugins ? null +# Checks meson.is_cross_build(), so even canExecute isn't enough. +, enableDocumentation ? stdenv.hostPlatform == stdenv.buildPlatform && plugins == null +, hotdoc # TODO: required for case-insensitivity hack below , yq , moreutils -# specify a limited set of plugins to build if not all supported plugins -, plugins ? null }: let @@ -94,13 +96,13 @@ let selectedPlugins = if plugins != null then lib.unique (lib.sort lib.lessThan plugins) else lib.subtractLists ( [ - "audiofx" # tests have race-y failure, see https://gitlab.freedesktop.org/gstreamer/gst-plugins-rs/-/issues/337 "csound" # tests have weird failure on x86, does not currently work on arm or darwin + "livesync" # tests have suspicious intermittent failure, see https://gitlab.freedesktop.org/gstreamer/gst-plugins-rs/-/issues/357 ] ++ lib.optionals stdenv.isDarwin [ "reqwest" # tests hang on darwin "threadshare" # tests cannot bind to localhost on darwin "webp" # not supported on darwin (upstream crate issue) - ] ++ lib.optionals (stdenv.isDarwin && !stdenv.isAarch64) [ + ] ++ lib.optionals (!gst-plugins-base.glEnabled) [ # these require gstreamer-gl which requires darwin sdk bump "gtk4" "livesync" @@ -161,6 +163,8 @@ stdenv.mkDerivation rec { cargo cargo-c nasm + ] ++ lib.optionals enableDocumentation [ + hotdoc ]; buildInputs = [ @@ -177,7 +181,7 @@ stdenv.mkDerivation rec { map (plugin: lib.mesonEnable plugin true) selectedPlugins ) ++ [ (lib.mesonOption "sodium-source" "system") - (lib.mesonEnable "doc" false) # `hotdoc` not packaged in nixpkgs as of writing + (lib.mesonEnable "doc" enableDocumentation) ] ++ (let crossFile = writeText "cross-file.conf" '' [binaries] @@ -187,7 +191,7 @@ stdenv.mkDerivation rec { "--cross-file=${crossFile}" ]); - # turn off all auto plugins if a list is specified + # turn off all auto plugins since we use a list of plugins we generate mesonAutoFeatures = "disabled"; doCheck = true; @@ -202,7 +206,7 @@ stdenv.mkDerivation rec { export CSOUND_LIB_DIR=${lib.getLib csound}/lib '' + lib.optionalString (lib.mutuallyExclusive [ "webrtc" "webrtchttp" ] selectedPlugins) '' sed -i "/\['gstreamer-webrtc-1\.0', 'gst-plugins-bad', 'gstwebrtc_dep', 'gstwebrtc'\]/d" meson.build - '' + lib.optionalString (stdenv.isDarwin && !stdenv.isAarch64) '' + '' + lib.optionalString (!gst-plugins-base.glEnabled) '' sed -i "/\['gstreamer-gl-1\.0', 'gst-plugins-base', 'gst_gl_dep', 'gstgl'\]/d" meson.build ''; @@ -210,7 +214,7 @@ stdenv.mkDerivation rec { checkPhase = '' runHook preCheck - meson test --no-rebuild --verbose --timeout-multiplier 6 + meson test --no-rebuild --verbose --timeout-multiplier 12 runHook postCheck ''; diff --git a/pkgs/development/libraries/gstreamer/rtsp-server/default.nix b/pkgs/development/libraries/gstreamer/rtsp-server/default.nix index 0f8a2f59c577c..2fe745e0329e7 100644 --- a/pkgs/development/libraries/gstreamer/rtsp-server/default.nix +++ b/pkgs/development/libraries/gstreamer/rtsp-server/default.nix @@ -15,11 +15,11 @@ stdenv.mkDerivation rec { pname = "gst-rtsp-server"; - version = "1.22.2"; + version = "1.22.3"; src = fetchurl { url = "https://gstreamer.freedesktop.org/src/${pname}/${pname}-${version}.tar.xz"; - hash = "sha256-K+Suz7iHEBAOpxFe0CFkA+gJQ0Tr8UYJQnG41Nc4KL8="; + hash = "sha256-0Co536m9v5mj3S03jheUKzzkLf42+wwn4tCwFyL8Vh0="; }; outputs = [ @@ -62,6 +62,6 @@ stdenv.mkDerivation rec { ''; license = licenses.lgpl2Plus; platforms = platforms.unix; - maintainers = with maintainers; [ bkchr ]; + maintainers = with maintainers; [ bkchr lilyinstarlight ]; }; } diff --git a/pkgs/development/libraries/gstreamer/ugly/default.nix b/pkgs/development/libraries/gstreamer/ugly/default.nix index 0ebc61565ba62..c0926dfc50679 100644 --- a/pkgs/development/libraries/gstreamer/ugly/default.nix +++ b/pkgs/development/libraries/gstreamer/ugly/default.nix @@ -26,13 +26,13 @@ stdenv.mkDerivation rec { pname = "gst-plugins-ugly"; - version = "1.22.2"; + version = "1.22.3"; outputs = [ "out" "dev" ]; src = fetchurl { url = "https://gstreamer.freedesktop.org/src/${pname}/${pname}-${version}.tar.xz"; - hash = "sha256-jzD0TbC9BjcJv2++VROOOpivCry2HDYPNVgrvhDoBpE="; + hash = "sha256-PcmO1cIpM2izxObOVdib6DSgpi6b+I7xeSjPA7fVo2A="; }; nativeBuildInputs = [ @@ -93,6 +93,6 @@ stdenv.mkDerivation rec { ''; license = if enableGplPlugins then licenses.gpl2Plus else licenses.lgpl2Plus; platforms = platforms.unix; - maintainers = with maintainers; [ matthewbauer ]; + maintainers = with maintainers; [ matthewbauer lilyinstarlight ]; }; } diff --git a/pkgs/development/libraries/gstreamer/vaapi/default.nix b/pkgs/development/libraries/gstreamer/vaapi/default.nix index b34581ed3435a..c25aa55557aa5 100644 --- a/pkgs/development/libraries/gstreamer/vaapi/default.nix +++ b/pkgs/development/libraries/gstreamer/vaapi/default.nix @@ -24,11 +24,11 @@ stdenv.mkDerivation rec { pname = "gstreamer-vaapi"; - version = "1.22.2"; + version = "1.22.3"; src = fetchurl { url = "https://gstreamer.freedesktop.org/src/${pname}/${pname}-${version}.tar.xz"; - hash = "sha256-0uZC+XRfl9n3On9Qhedlmpox/iCbd05uRdrgQbQ13wY="; + hash = "sha256-onhnBi6LaTBfylt9PxPtfDGLcD59cnVslDlb0wXHsyw="; }; outputs = [ @@ -62,10 +62,11 @@ stdenv.mkDerivation rec { xorg.libXrandr xorg.libSM xorg.libICE - libGL - libGLU nasm libvpx + ] ++ lib.optionals (!stdenv.isDarwin) [ + libGL + libGLU ]; strictDeps = true; @@ -84,7 +85,7 @@ stdenv.mkDerivation rec { description = "Set of VAAPI GStreamer Plug-ins"; homepage = "https://gstreamer.freedesktop.org"; license = licenses.lgpl21Plus; - maintainers = with maintainers; [ ]; platforms = platforms.linux; + maintainers = with maintainers; [ lilyinstarlight ]; }; } diff --git a/pkgs/development/libraries/harfbuzz/default.nix b/pkgs/development/libraries/harfbuzz/default.nix index 24d00992eaabd..41e29d0d88a30 100644 --- a/pkgs/development/libraries/harfbuzz/default.nix +++ b/pkgs/development/libraries/harfbuzz/default.nix @@ -34,11 +34,11 @@ stdenv.mkDerivation rec { pname = "harfbuzz${lib.optionalString withIcu "-icu"}"; - version = "7.2.0"; + version = "7.3.0"; src = fetchurl { url = "https://github.com/harfbuzz/harfbuzz/releases/download/${version}/harfbuzz-${version}.tar.xz"; - hash = "sha256-/FVgyAfq4O/V+VtapMZYAMeo7tZkIAimsefj//94c8w="; + hash = "sha256-IHcHiXSaybqEbfM5g9vaItuDbHDZ9dBQy5qlNHCUqPs="; }; postPatch = '' diff --git a/pkgs/development/libraries/hpp-fcl/default.nix b/pkgs/development/libraries/hpp-fcl/default.nix new file mode 100644 index 0000000000000..ba58835ea5dd4 --- /dev/null +++ b/pkgs/development/libraries/hpp-fcl/default.nix @@ -0,0 +1,63 @@ +{ lib +, stdenv +, fetchFromGitHub +, fetchpatch +, cmake +, boost +, eigen +, assimp +, octomap +, qhull +, pythonSupport ? false +, python3Packages +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "hpp-fcl"; + version = "2.3.4"; + + src = fetchFromGitHub { + owner = "humanoid-path-planner"; + repo = finalAttrs.pname; + rev = "v${finalAttrs.version}"; + fetchSubmodules = true; + hash = "sha256-tX8AvlR/Az8fFs4ylqFijw3hXiNRoEWffmYbTcaqO90="; + }; + + strictDeps = true; + + nativeBuildInputs = [ + cmake + ]; + + propagatedBuildInputs = [ + assimp + qhull + octomap + ] ++ lib.optionals (!pythonSupport) [ + boost + eigen + ] ++ lib.optionals pythonSupport [ + python3Packages.boost + python3Packages.eigenpy + ]; + + cmakeFlags = [ + "-DHPP_FCL_HAS_QHULL=ON" + ] ++ lib.optionals (!pythonSupport) [ + "-DBUILD_PYTHON_INTERFACE=OFF" + ]; + + doCheck = true; + pythonImportsCheck = lib.optionals (!pythonSupport) [ + "hppfcl" + ]; + + meta = with lib; { + description = "An extension of the Flexible Collision Library"; + homepage = "https://github.com/humanoid-path-planner/hpp-fcl"; + license = licenses.bsd3; + maintainers = with maintainers; [ nim65s ]; + platforms = platforms.unix; + }; +}) diff --git a/pkgs/development/libraries/http-parser/default.nix b/pkgs/development/libraries/http-parser/default.nix index dd1ea3559d7a0..327121dc6b1bc 100644 --- a/pkgs/development/libraries/http-parser/default.nix +++ b/pkgs/development/libraries/http-parser/default.nix @@ -26,6 +26,8 @@ stdenv.mkDerivation rec { doCheck = true; checkTarget = "test"; + enableParallelBuilding = true; + meta = with lib; { description = "An HTTP message parser written in C"; homepage = "https://github.com/nodejs/http-parser"; diff --git a/pkgs/development/libraries/httplib/default.nix b/pkgs/development/libraries/httplib/default.nix index 9061cbbb15e64..dca86affa633a 100644 --- a/pkgs/development/libraries/httplib/default.nix +++ b/pkgs/development/libraries/httplib/default.nix @@ -7,13 +7,13 @@ stdenv.mkDerivation rec { pname = "httplib"; - version = "0.12.3"; + version = "0.12.5"; src = fetchFromGitHub { owner = "yhirose"; repo = "cpp-httplib"; rev = "v${version}"; - hash = "sha256-QHsa+Lmw9XTnwfyyY8b5I5PC8DFEIzwPvIdCwJWQz+I="; + hash = "sha256-9qCquF6DXpgtrfXVd/hc8n1Eu1nOxf/Lm+R13QI0N9Q="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/json-c/default.nix b/pkgs/development/libraries/json-c/default.nix index d6aac7161d4fd..785548c211a93 100644 --- a/pkgs/development/libraries/json-c/default.nix +++ b/pkgs/development/libraries/json-c/default.nix @@ -1,14 +1,24 @@ -{ lib, stdenv, fetchurl, cmake }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake }: stdenv.mkDerivation rec { pname = "json-c"; version = "0.16"; - src = fetchurl { - url = "https://s3.amazonaws.com/json-c_releases/releases/${pname}-${version}.tar.gz"; - sha256 = "sha256-jkWsj5bsd5Hq87t+5Q6cIQC7vIe40PHQMMW6igKI2Ws="; + src = fetchFromGitHub { + owner = "json-c"; + repo = "json-c"; + rev = "json-c-0.16-20220414"; + sha256 = "sha256-KbnUWLgpg6/1wvXhUoYswyqDcgiwEcvgaWCPjNcX20o="; }; + patches = [ + # needed for emscripten, which uses LLVM 15+ + (fetchpatch { + url = "https://github.com/json-c/json-c/commit/6eca65617aacd19f4928acd5766b8dd20eda0b34.patch"; + sha256 = "sha256-fyugX+HgYlt/4AVtfNDaKS+blyUt8JYTNqkmhURb9dk="; + }) + ]; + outputs = [ "out" "dev" ]; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/kde-frameworks/default.nix b/pkgs/development/libraries/kde-frameworks/default.nix index abb11662a4338..4245aa0ed20ec 100644 --- a/pkgs/development/libraries/kde-frameworks/default.nix +++ b/pkgs/development/libraries/kde-frameworks/default.nix @@ -82,7 +82,7 @@ let homepage = meta.homepage or "https://kde.org"; license = meta.license or license; maintainers = (meta.maintainers or []) ++ maintainers; - platforms = meta.platforms or lib.platforms.linux; + platforms = meta.platforms or lib.platforms.all; }; in mkDerivation (args // { diff --git a/pkgs/development/libraries/kde-frameworks/kauth/default.nix b/pkgs/development/libraries/kde-frameworks/kauth/default.nix index f5ab518ce6213..0ad7cfbbb7e11 100644 --- a/pkgs/development/libraries/kde-frameworks/kauth/default.nix +++ b/pkgs/development/libraries/kde-frameworks/kauth/default.nix @@ -1,7 +1,7 @@ { - lib, mkDerivation, propagate, + lib, stdenv, mkDerivation, propagate, extra-cmake-modules, kcoreaddons, qttools, - enablePolkit ? true, polkit-qt + enablePolkit ? stdenv.isLinux, polkit-qt }: mkDerivation { diff --git a/pkgs/development/libraries/kde-frameworks/kcoreaddons.nix b/pkgs/development/libraries/kde-frameworks/kcoreaddons.nix index fbd6710994659..3e0eeec617b65 100644 --- a/pkgs/development/libraries/kde-frameworks/kcoreaddons.nix +++ b/pkgs/development/libraries/kde-frameworks/kcoreaddons.nix @@ -1,5 +1,5 @@ { - mkDerivation, lib, + mkDerivation, lib, stdenv, extra-cmake-modules, qtbase, qttools, shared-mime-info }: @@ -18,4 +18,7 @@ mkDerivation ({ postInstall = '' moveToOutput "mkspecs" "$dev" ''; +} // lib.optionalAttrs stdenv.isDarwin { + # https://invent.kde.org/frameworks/kcoreaddons/-/merge_requests/327 + env.NIX_CFLAGS_COMPILE = "-DSOCK_CLOEXEC=0"; }) diff --git a/pkgs/development/libraries/kde-frameworks/kdoctools/default.nix b/pkgs/development/libraries/kde-frameworks/kdoctools/default.nix index 83f3a04ee36ad..4b52cd95b7101 100644 --- a/pkgs/development/libraries/kde-frameworks/kdoctools/default.nix +++ b/pkgs/development/libraries/kde-frameworks/kdoctools/default.nix @@ -1,5 +1,5 @@ { - mkDerivation, + mkDerivation, lib, stdenv, fetchpatch, extra-cmake-modules, docbook_xml_dtd_45, docbook_xsl_ns, karchive, ki18n, qtbase, perl, perlPackages @@ -20,7 +20,15 @@ mkDerivation { ]; buildInputs = [ karchive ki18n ]; outputs = [ "out" "dev" ]; - patches = [ ./kdoctools-no-find-docbook-xml.patch ]; + patches = [ ./kdoctools-no-find-docbook-xml.patch ] + # kf.doctools.core: Error: Could not find kdoctools catalogs + ++ lib.optionals stdenv.isDarwin [ + (fetchpatch { + name = "kdoctools-relocate-datapath.patch"; + url = "https://github.com/msys2/MINGW-packages/raw/0900785a1f4e4146ab9561fb92a1c70fa70fcfc4/mingw-w64-kdoctools-qt5/0001-kdoctools-relocate-datapath.patch"; + hash = "sha256-MlokdrabXavWHGXYmdz9zZDJQIwAdNxebJBSAH2Z3vI="; + }) + ]; cmakeFlags = [ "-DDocBookXML4_DTD_DIR=${docbook_xml_dtd_45}/xml/dtd/docbook" "-DDocBookXSL_DIR=${docbook_xsl_ns}/xml/xsl/docbook" diff --git a/pkgs/development/libraries/kde-frameworks/ktexteditor.nix b/pkgs/development/libraries/kde-frameworks/ktexteditor.nix index 5788c07cb05ce..ccc9f76b237ac 100644 --- a/pkgs/development/libraries/kde-frameworks/ktexteditor.nix +++ b/pkgs/development/libraries/kde-frameworks/ktexteditor.nix @@ -1,12 +1,12 @@ { - mkDerivation, + mkDerivation, lib, stdenv, extra-cmake-modules, perl, karchive, kconfig, kguiaddons, ki18n, kiconthemes, kio, kparts, libgit2, qtscript, qtxmlpatterns, sonnet, syntax-highlighting, qtquickcontrols, editorconfig-core-c }: -mkDerivation { +mkDerivation ({ pname = "ktexteditor"; nativeBuildInputs = [ extra-cmake-modules perl ]; buildInputs = [ @@ -15,4 +15,9 @@ mkDerivation { editorconfig-core-c ]; propagatedBuildInputs = [ kparts ]; -} +} // lib.optionalAttrs stdenv.isDarwin { + postPatch = '' + substituteInPlace src/part/CMakeLists.txt \ + --replace "kpart.desktop" "${kparts}/share/kservicetypes5/kpart.desktop" + ''; +}) diff --git a/pkgs/development/libraries/kimageannotator/default.nix b/pkgs/development/libraries/kimageannotator/default.nix index 66d1fc9a4788e..ce1be1d180629 100644 --- a/pkgs/development/libraries/kimageannotator/default.nix +++ b/pkgs/development/libraries/kimageannotator/default.nix @@ -2,13 +2,13 @@ mkDerivation rec { pname = "kimageannotator"; - version = "0.6.0"; + version = "0.6.1"; src = fetchFromGitHub { owner = "ksnip"; repo = "kImageAnnotator"; rev = "v${version}"; - sha256 = "sha256-fWMaat5IguEZwoEJiEjGrWIbOqdJhs25qOebxpWVQQk="; + sha256 = "sha256-lNoYAJ5yTC5H0gWPVkBGhLroRhFCPyC1DsVBy0IrqL4="; }; nativeBuildInputs = [ cmake qttools ]; diff --git a/pkgs/development/libraries/libLAS/default.nix b/pkgs/development/libraries/libLAS/default.nix index 3fd247dc4e82f..fc55f14f118e5 100644 --- a/pkgs/development/libraries/libLAS/default.nix +++ b/pkgs/development/libraries/libLAS/default.nix @@ -15,6 +15,16 @@ stdenv.mkDerivation rec { url = "https://github.com/libLAS/libLAS/commit/ded463732db1f9baf461be6f3fe5b8bb683c41cd.patch"; sha256 = "sha256-aWMpazeefDHE9OzuLR3FJ8+oXeGhEsk1igEm6j2DUnw="; }) + (fetchpatch { + name = "fix-build-with-boost-1.73-1.patch"; + url = "https://github.com/libLAS/libLAS/commit/af431abce95076b59f4eb7c6ef0930ca57c8a063.patch"; + hash = "sha256-2lr028t5hq3oOLZFXnvIJXCUsoVHbG/Mus93OZvi5ZU="; + }) + (fetchpatch { + name = "fix-build-with-boost-1.73-2.patch"; + url = "https://github.com/libLAS/libLAS/commit/0d3b8d75f371a6b7c605bbe5293091cb64a7e2d3.patch"; + hash = "sha256-gtNIazR+l1h+Xef+4qQc7EVi+Nlht3F8CrwkINothtA="; + }) ]; nativeBuildInputs = [ cmake ] ++ lib.optional stdenv.hostPlatform.isDarwin fixDarwinDylibNames; diff --git a/pkgs/development/libraries/libaom/default.nix b/pkgs/development/libraries/libaom/default.nix index 5129637c80c80..6be0370a17736 100644 --- a/pkgs/development/libraries/libaom/default.nix +++ b/pkgs/development/libraries/libaom/default.nix @@ -8,11 +8,11 @@ let in stdenv.mkDerivation rec { pname = "libaom"; - version = "3.6.0"; + version = "3.6.1"; src = fetchzip { url = "https://aomedia.googlesource.com/aom/+archive/v${version}.tar.gz"; - sha256 = "sha256-tt19UCsZP99rq6BYBSzSHecyIu4CiimD+P1f3CY2QEU="; + sha256 = "sha256-U7hmKdpjTtqStM4UIjCvgJ2swpZ1x0Px1Q9+gSHbaeQ="; stripRoot = false; }; diff --git a/pkgs/development/libraries/libass/default.nix b/pkgs/development/libraries/libass/default.nix index 84c3eb39ef361..3265fd7d093e3 100644 --- a/pkgs/development/libraries/libass/default.nix +++ b/pkgs/development/libraries/libass/default.nix @@ -17,6 +17,8 @@ stdenv.mkDerivation rec { sha256 = "sha256-8NoLv7pHbBauPhz9hiJW0wkVkR96uqGxbOYu5lMZJ4Q="; }; + outputs = [ "out" "dev" ]; + configureFlags = [ (lib.enableFeature fontconfigSupport "fontconfig") (lib.enableFeature rasterizerSupport "rasterizer") diff --git a/pkgs/development/libraries/libclc/default.nix b/pkgs/development/libraries/libclc/default.nix index 647079ae2fb42..1db2819a57b5e 100644 --- a/pkgs/development/libraries/libclc/default.nix +++ b/pkgs/development/libraries/libclc/default.nix @@ -1,38 +1,48 @@ -{ lib, stdenv, fetchFromGitHub, ninja, cmake, python3, llvmPackages, spirv-llvm-translator }: - -let - llvm = llvmPackages.llvm; - clang-unwrapped = llvmPackages.clang-unwrapped; -in +{ lib, stdenv, fetchFromGitHub, buildPackages, ninja, cmake, python3, llvm_14 }: stdenv.mkDerivation rec { pname = "libclc"; - version = "15.0.7"; + version = "16.0.3"; src = fetchFromGitHub { owner = "llvm"; repo = "llvm-project"; rev = "llvmorg-${version}"; - sha256 = "sha256-wjuZQyXQ/jsmvy6y1aksCcEDXGBjuhpgngF3XQJ/T4s="; + hash = "sha256-paWwnoU3XMqreRgh9JbT1tDMTwq/ZL0ss3SJTteEGL0="; }; sourceRoot = "source/libclc"; + outputs = [ "out" "dev" ]; + # cmake expects all required binaries to be in the same place, so it will not be able to find clang without the patch postPatch = '' substituteInPlace CMakeLists.txt \ - --replace 'find_program( LLVM_CLANG clang PATHS ''${LLVM_BINDIR} NO_DEFAULT_PATH )' \ - 'find_program( LLVM_CLANG clang PATHS "${clang-unwrapped}/bin" NO_DEFAULT_PATH )' \ - --replace 'find_program( LLVM_SPIRV llvm-spirv PATHS ''${LLVM_BINDIR} NO_DEFAULT_PATH )' \ - 'find_program( LLVM_SPIRV llvm-spirv PATHS "${spirv-llvm-translator}/bin" NO_DEFAULT_PATH )' + --replace 'find_program( LLVM_CLANG clang PATHS ''${LLVM_TOOLS_BINARY_DIR} NO_DEFAULT_PATH )' \ + 'find_program( LLVM_CLANG clang PATHS "${buildPackages.clang_14.cc}/bin" NO_DEFAULT_PATH )' \ + --replace 'find_program( LLVM_AS llvm-as PATHS ''${LLVM_TOOLS_BINARY_DIR} NO_DEFAULT_PATH )' \ + 'find_program( LLVM_AS llvm-as PATHS "${buildPackages.llvm_14}/bin" NO_DEFAULT_PATH )' \ + --replace 'find_program( LLVM_LINK llvm-link PATHS ''${LLVM_TOOLS_BINARY_DIR} NO_DEFAULT_PATH )' \ + 'find_program( LLVM_LINK llvm-link PATHS "${buildPackages.llvm_14}/bin" NO_DEFAULT_PATH )' \ + --replace 'find_program( LLVM_OPT opt PATHS ''${LLVM_TOOLS_BINARY_DIR} NO_DEFAULT_PATH )' \ + 'find_program( LLVM_OPT opt PATHS "${buildPackages.llvm_14}/bin" NO_DEFAULT_PATH )' \ + --replace 'find_program( LLVM_SPIRV llvm-spirv PATHS ''${LLVM_TOOLS_BINARY_DIR} NO_DEFAULT_PATH )' \ + 'find_program( LLVM_SPIRV llvm-spirv PATHS "${buildPackages.spirv-llvm-translator}/bin" NO_DEFAULT_PATH )' + '' + lib.optionalString (stdenv.hostPlatform != stdenv.buildPlatform) '' + substituteInPlace CMakeLists.txt \ + --replace 'COMMAND prepare_builtins' 'COMMAND ${buildPackages.libclc.dev}/bin/prepare_builtins' ''; - nativeBuildInputs = [ cmake ninja python3 spirv-llvm-translator ]; - buildInputs = [ llvm clang-unwrapped ]; + nativeBuildInputs = [ cmake ninja python3 ]; + buildInputs = [ llvm_14 ]; strictDeps = true; cmakeFlags = [ "-DCMAKE_INSTALL_INCLUDEDIR=include" ]; + postInstall = '' + install -Dt $dev/bin prepare_builtins + ''; + meta = with lib; { broken = stdenv.isDarwin; homepage = "http://libclc.llvm.org/"; diff --git a/pkgs/development/libraries/libcs50/default.nix b/pkgs/development/libraries/libcs50/default.nix new file mode 100644 index 0000000000000..14c8190ccbf2a --- /dev/null +++ b/pkgs/development/libraries/libcs50/default.nix @@ -0,0 +1,28 @@ +{ lib, stdenv, fetchFromGitHub }: + +stdenv.mkDerivation (finalAttrs: { + pname = "libcs50"; + version = "11.0.2"; + + src = fetchFromGitHub { + owner = "cs50"; + repo = "libcs50"; + rev = "v${finalAttrs.version}"; + hash = "sha256-A4CEU5wfwykVTDIsKZnQ8co+6RwBGYGZEZxRFzQTKBI="; + }; + + installPhase = '' + runHook preInstall + mkdir $out + cp -R build/lib $out/lib + cp -R build/include $out/include + ln -sf $out/lib/libcs50.so.11.0.2 $out/lib/libcs50.so.11 + runHook postInstall + ''; + + meta = with lib; { + homepage = "https://github.com/cs50/libcs50"; + description = "CS50 Library for C"; + license = licenses.gpl3Only; + }; +}) diff --git a/pkgs/development/libraries/libcyaml/default.nix b/pkgs/development/libraries/libcyaml/default.nix index 645187368e115..99ad390896f68 100644 --- a/pkgs/development/libraries/libcyaml/default.nix +++ b/pkgs/development/libraries/libcyaml/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "libcyaml"; - version = "1.4.0"; + version = "1.4.1"; src = fetchFromGitHub { owner = "tlsa"; repo = "libcyaml"; rev = "v${version}"; - sha256 = "sha256-UENh8oxZm7uukCr448Nrf7devDK4SIT3DVhvXbwfjw8="; + sha256 = "sha256-iS1T8R0SW+qu0TlP5FVlDzUfQitiZMUkbJUigbxeW0Y="; }; buildInputs = [ libyaml ]; diff --git a/pkgs/development/libraries/libdaemon/default.nix b/pkgs/development/libraries/libdaemon/default.nix index 581cc723dc414..112792454c43c 100644 --- a/pkgs/development/libraries/libdaemon/default.nix +++ b/pkgs/development/libraries/libdaemon/default.nix @@ -9,6 +9,8 @@ stdenv.mkDerivation rec { sha256 = "0d5qlq5ab95wh1xc87rqrh1vx6i8lddka1w3f1zcqvcqdxgyn8zx"; }; + outputs = [ "out" "dev" "doc" ]; + patches = [ ./fix-includes.patch ]; configureFlags = [ "--disable-lynx" ] diff --git a/pkgs/development/libraries/libevdev/default.nix b/pkgs/development/libraries/libevdev/default.nix index 6af1e5d87182f..90853d5f2db42 100644 --- a/pkgs/development/libraries/libevdev/default.nix +++ b/pkgs/development/libraries/libevdev/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "libevdev"; - version = "1.13.0"; + version = "1.13.1"; src = fetchurl { url = "https://www.freedesktop.org/software/${pname}/${pname}-${version}.tar.xz"; - sha256 = "sha256-nt8gBsyGpQVSeWR8OOySPRGoIe5NwsMDPo0g6O4jfNk="; + sha256 = "sha256-Bqd78qxcmTMFiCvBZBAX9b7BWS1tG2R4e61JKrNPLzY="; }; nativeBuildInputs = [ python3 ]; diff --git a/pkgs/development/libraries/libglvnd/default.nix b/pkgs/development/libraries/libglvnd/default.nix index 4047c7bbefd08..fa9562947f815 100644 --- a/pkgs/development/libraries/libglvnd/default.nix +++ b/pkgs/development/libraries/libglvnd/default.nix @@ -33,7 +33,10 @@ stdenv.mkDerivation rec { "-DDEFAULT_EGL_VENDOR_CONFIG_DIRS=\"${addOpenGLRunpath.driverLink}/share/glvnd/egl_vendor.d:/etc/glvnd/egl_vendor.d:/usr/share/glvnd/egl_vendor.d\"" "-Wno-error=array-bounds" - ] ++ lib.optional stdenv.cc.isClang "-Wno-error"); + ] ++ lib.optionals stdenv.cc.isClang [ + "-Wno-error" + "-Wno-int-conversion" + ]); configureFlags = [] # Indirectly: https://bugs.freedesktop.org/show_bug.cgi?id=35268 diff --git a/pkgs/development/libraries/libidn2/default.nix b/pkgs/development/libraries/libidn2/default.nix index 2c4041a9cfa7d..0782f94f41e5b 100644 --- a/pkgs/development/libraries/libidn2/default.nix +++ b/pkgs/development/libraries/libidn2/default.nix @@ -18,8 +18,6 @@ stdenv.mkDerivation rec { # Beware: non-bootstrap libidn2 is overridden by ./hack.nix outputs = [ "bin" "dev" "out" "info" "devdoc" ]; - patches = lib.optional stdenv.isDarwin ./fix-error-darwin.patch; - enableParallelBuilding = true; # The above patch causes the documentation to be regenerated, so the diff --git a/pkgs/development/libraries/libidn2/fix-error-darwin.patch b/pkgs/development/libraries/libidn2/fix-error-darwin.patch deleted file mode 100644 index e2202abd947c4..0000000000000 --- a/pkgs/development/libraries/libidn2/fix-error-darwin.patch +++ /dev/null @@ -1,20 +0,0 @@ -diff --git a/src/idn2.c b/src/idn2.c -index 6abbc72..804f0f2 100644 ---- a/src/idn2.c -+++ b/src/idn2.c -@@ -31,7 +31,6 @@ - #include <unistr.h> - - /* Gnulib headers. */ --#include "error.h" - #include "gettext.h" - #define _(String) dgettext (PACKAGE, String) - #include "progname.h" -@@ -222,7 +219,7 @@ main (int argc, char *argv[]) - } - - if (ferror (stdin)) -- error (EXIT_FAILURE, errno, "%s", _("input error")); -+ perror (_("input error")); - - cmdline_parser_free (&args_info); diff --git a/pkgs/development/libraries/liblc3/default.nix b/pkgs/development/libraries/liblc3/default.nix index e246732963cae..3e27e4064c591 100644 --- a/pkgs/development/libraries/liblc3/default.nix +++ b/pkgs/development/libraries/liblc3/default.nix @@ -7,7 +7,7 @@ let name = "liblc3"; - version = "1.0.2"; + version = "1.0.3"; in stdenv.mkDerivation { pname = name; @@ -17,7 +17,7 @@ stdenv.mkDerivation { owner = "google"; repo = "liblc3"; rev = "v${version}"; - sha256 = "sha256-Be+dPUnxC2+cHzqL2FAqXOU7NjEAHiPBKh7spuYkvhc="; + sha256 = "sha256-PEnK12FWAtxOMR3WyuxOQTgF+lD9S5YX+oKuWRbFfXM="; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/libnest2d/default.nix b/pkgs/development/libraries/libnest2d/default.nix index 4117b38e1d9b9..b3aba528f9243 100644 --- a/pkgs/development/libraries/libnest2d/default.nix +++ b/pkgs/development/libraries/libnest2d/default.nix @@ -1,6 +1,6 @@ -{ lib, stdenv, fetchFromGitHub, cmake, clipper, nlopt, boost, python3 }: +{ lib, stdenv, fetchFromGitHub, cmake, clipper, nlopt, boost }: -stdenv.mkDerivation rec { +stdenv.mkDerivation { version = "4.12.0"; pname = "libnest2d"; @@ -14,6 +14,11 @@ stdenv.mkDerivation rec { sha256 = "1hzqi4z55x76rss3xk7hfqhy9hcaq2jaav5jqxa1aqmbvarr2gla"; }; + postPatch = '' + substituteInPlace {,examples/}CMakeLists.txt \ + --replace "set(CMAKE_CXX_STANDARD 11)" "set(CMAKE_CXX_STANDARD 14)" + ''; + propagatedBuildInputs = [ clipper nlopt boost ]; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/libssh/default.nix b/pkgs/development/libraries/libssh/default.nix index 417405f42652f..00cb7e042c970 100644 --- a/pkgs/development/libraries/libssh/default.nix +++ b/pkgs/development/libraries/libssh/default.nix @@ -22,11 +22,21 @@ stdenv.mkDerivation rec { sha256 = "sha256-tg4v9/Nnue7itWNNOmMwPd/t4OahjfyojESodw5+QjQ="; }; + # Do not split 'dev' output until lib/cmake/libssh/libssh-config.cmake + # is fixed to point INTERFACE_INCLUDE_DIRECTORIES to .dev output. + # Otherwise it breaks `plasma5Packages.kio-extras`: + # https://hydra.nixos.org/build/221540008/nixlog/3/tail + #outputs = [ "out" "dev" ]; + postPatch = '' # Fix headers to use libsodium instead of NaCl sed -i 's,nacl/,sodium/,g' ./include/libssh/curve25519.h src/curve25519.c ''; + # Don’t build examples, which are not installed and require additional dependencies not + # included in `buildInputs` such as libX11. + cmakeFlags = [ "-DWITH_EXAMPLES=OFF" ]; + # single output, otherwise cmake and .pc files point to the wrong directory # outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/libssh2/default.nix b/pkgs/development/libraries/libssh2/default.nix index ce496637fcc20..091885a1f084a 100644 --- a/pkgs/development/libraries/libssh2/default.nix +++ b/pkgs/development/libraries/libssh2/default.nix @@ -2,22 +2,17 @@ stdenv.mkDerivation rec { pname = "libssh2"; - version = "1.10.0"; + version = "1.11.0"; src = fetchurl { url = "https://www.libssh2.org/download/libssh2-${version}.tar.gz"; - sha256 = "sha256-LWTpDz3tOUuR06LndMogOkF59prr7gMAPlpvpiHkHVE="; + sha256 = "sha256-NzYWHkHiaTMk3rOMJs/cPv5iCdY0ukJY2xzs/2pa1GE="; }; outputs = [ "out" "dev" "devdoc" ]; - patches = [ - # https://github.com/libssh2/libssh2/pull/700 - # openssl: add support for LibreSSL 3.5.x - ./openssl_add_support_for_libressl_3_5.patch - ]; - - buildInputs = [ openssl zlib ] + propagatedBuildInputs = [ openssl ]; # see Libs: in libssh2.pc + buildInputs = [ zlib ] ++ lib.optional stdenv.hostPlatform.isMinGW windows.mingw_w64; meta = with lib; { diff --git a/pkgs/development/libraries/libssh2/openssl_add_support_for_libressl_3_5.patch b/pkgs/development/libraries/libssh2/openssl_add_support_for_libressl_3_5.patch deleted file mode 100644 index d72a67a63403c..0000000000000 --- a/pkgs/development/libraries/libssh2/openssl_add_support_for_libressl_3_5.patch +++ /dev/null @@ -1,26 +0,0 @@ -From f0681a4573d7c7f7484d3157ddff7063a200295b Mon Sep 17 00:00:00 2001 -From: Viktor Szakats <commit@vsz.me> -Date: Thu, 19 May 2022 13:25:06 +0000 -Subject: [PATCH] openssl: add support for LibreSSL 3.5.x - -LibreSSL 3.5.0 made more structures opaque, so let's enable existing -support for that when building against these LibreSSL versions. - -Ref: https://ftp.openbsd.org/pub/OpenBSD/LibreSSL/libressl-3.5.0-relnotes.txt ---- - src/openssl.h | 3 ++- - 1 file changed, 2 insertions(+), 1 deletion(-) - -diff --git a/src/openssl.h b/src/openssl.h -index 658b040..1733b9e 100644 ---- a/src/openssl.h -+++ b/src/openssl.h -@@ -58,7 +58,8 @@ - #include <openssl/rand.h> - - #if OPENSSL_VERSION_NUMBER >= 0x10100000L && \ -- !defined(LIBRESSL_VERSION_NUMBER) -+ !defined(LIBRESSL_VERSION_NUMBER) || \ -+ LIBRESSL_VERSION_NUMBER >= 0x3050000fL - # define HAVE_OPAQUE_STRUCTS 1 - #endif diff --git a/pkgs/development/libraries/libuv/default.nix b/pkgs/development/libraries/libuv/default.nix index c24cfd3533d53..544ad53772913 100644 --- a/pkgs/development/libraries/libuv/default.nix +++ b/pkgs/development/libraries/libuv/default.nix @@ -1,7 +1,6 @@ { stdenv , lib , fetchFromGitHub -, fetchpatch , autoconf , automake , libtool @@ -24,27 +23,18 @@ }: stdenv.mkDerivation rec { - version = "1.44.2"; + version = "1.45.0"; pname = "libuv"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "sha256-K6v+00basjI32ON27ZjC5spQi/zWCcslDwQwyosq2iY="; + sha256 = "sha256-qKw9QFR24Uw7pVA9isPH8Va+9/5DYuqXz6l6jWcXn+4="; }; outputs = [ "out" "dev" ]; - patches = [ - # Fix tests for statically linked variant upstream PR is - # https://github.com/libuv/libuv/pull/3735 - (fetchpatch { - url = "https://github.com/libuv/libuv/commit/9d898acc564351dde74e9ed9865144e5c41f5beb.patch"; - sha256 = "sha256-6XsjrseD8a+ny887EKOX0NmHocLMXGf2YL13vkNHUZ0="; - }) - ]; - postPatch = let toDisable = [ "getnameinfo_basic" "udp_send_hang_loop" # probably network-dependent @@ -53,7 +43,7 @@ stdenv.mkDerivation rec { "getaddrinfo_fail" "getaddrinfo_fail_sync" "threadpool_multiple_event_loops" # times out on slow machines "get_passwd" # passed on NixOS but failed on other Linuxes - "tcp_writealot" "udp_multicast_join" "udp_multicast_join6" # times out sometimes + "tcp_writealot" "udp_multicast_join" "udp_multicast_join6" "metrics_pool_events" # times out sometimes "fs_fstat" # https://github.com/libuv/libuv/issues/2235#issuecomment-1012086927 # Assertion failed in test/test-tcp-bind6-error.c on line 60: r == UV_EADDRINUSE diff --git a/pkgs/development/libraries/libvisual/default.nix b/pkgs/development/libraries/libvisual/default.nix index 046035a290cb1..52ea32f758329 100644 --- a/pkgs/development/libraries/libvisual/default.nix +++ b/pkgs/development/libraries/libvisual/default.nix @@ -17,6 +17,8 @@ stdenv.mkDerivation rec { hash = "sha256-qhKHdBf3bTZC2fTHIzAjgNgzF1Y51jpVZB0Bkopd230="; }; + outputs = [ "out" "dev" ]; + patches = [ # pull upstream fix for SDL1 cross-compilation. # https://github.com/Libvisual/libvisual/pull/238 diff --git a/pkgs/development/libraries/libvterm-neovim/default.nix b/pkgs/development/libraries/libvterm-neovim/default.nix index bbbceab3ab78a..27ce41d20f623 100644 --- a/pkgs/development/libraries/libvterm-neovim/default.nix +++ b/pkgs/development/libraries/libvterm-neovim/default.nix @@ -8,11 +8,11 @@ stdenv.mkDerivation rec { pname = "libvterm-neovim"; # Releases are not tagged, look at commit history to find latest release - version = "0.3.1"; + version = "0.3.2"; src = fetchurl { url = "https://www.leonerd.org.uk/code/libvterm/libvterm-${version}.tar.gz"; - sha256 = "sha256-JaitnBVIU2jf0Kip3KGuyP6lwn2j+nTsUY1dN4fww5c="; + sha256 = "sha256-ketQiAafTm7atp4UxCEvbaAZLmVpWVbcBIAWoNq4vPY="; }; nativeBuildInputs = [ perl libtool ]; diff --git a/pkgs/development/libraries/libwacom/default.nix b/pkgs/development/libraries/libwacom/default.nix index f1f6762bab8c3..c03dd99a125b6 100644 --- a/pkgs/development/libraries/libwacom/default.nix +++ b/pkgs/development/libraries/libwacom/default.nix @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { pname = "libwacom"; - version = "2.6.0"; + version = "2.7.0"; outputs = [ "out" "dev" ]; @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { owner = "linuxwacom"; repo = "libwacom"; rev = "libwacom-${version}"; - sha256 = "sha256-9zqW6zPrFcxv/yAAtFgdVavKVMXeDBoMP3E/XriUcT0="; + sha256 = "sha256-NNfhZMshM5U/EfJHuNgkDe5NEkEGKtJ56vSpXyGf/xw="; }; postPatch = '' diff --git a/pkgs/development/libraries/libwacom/surface.nix b/pkgs/development/libraries/libwacom/surface.nix index 6168686cf50b7..22707a375954e 100644 --- a/pkgs/development/libraries/libwacom/surface.nix +++ b/pkgs/development/libraries/libwacom/surface.nix @@ -7,8 +7,8 @@ let libwacom-surface = fetchFromGitHub { owner = "linux-surface"; repo = "libwacom-surface"; - rev = "v2.6.0-1"; - hash = "sha256-4UOO9LMyCJd4LkqU0uva/0Xc44fIVdIQi27tJOtNEFk="; + rev = "v2.7.0-1"; + hash = "sha256-LgJ8YFQQN05kyd6kxBakIIiGgZ9icW27xKK3Dz6TwLs="; }; in libwacom.overrideAttrs (old: { pname = "libwacom-surface"; diff --git a/pkgs/development/libraries/libxc/default.nix b/pkgs/development/libraries/libxc/default.nix index c8cbf8aa6c107..71dedb8346a56 100644 --- a/pkgs/development/libraries/libxc/default.nix +++ b/pkgs/development/libraries/libxc/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "libxc"; - version = "6.1.0"; + version = "6.2.0"; src = fetchFromGitLab { owner = "libxc"; repo = "libxc"; rev = version; - hash = "sha256-PqKqZbL9Y7lKu7tKo+DfAhoEeFSsYWEcwiFX41VhRIs="; + hash = "sha256-VILqlvACQyccaXXS+UE25+LzE74+52pI66RUrVS0esI="; }; nativeBuildInputs = [ perl cmake gfortran ]; @@ -20,6 +20,7 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DENABLE_FORTRAN=ON" "-DBUILD_SHARED_LIBS=ON" + "-DENABLE_XHOST=OFF" # Force compilation of higher derivatives "-DDISABLE_VXC=0" "-DDISABLE_FXC=0" diff --git a/pkgs/development/libraries/libyaml/default.nix b/pkgs/development/libraries/libyaml/default.nix index 03e7e4715f886..9a9c5e0311f16 100644 --- a/pkgs/development/libraries/libyaml/default.nix +++ b/pkgs/development/libraries/libyaml/default.nix @@ -14,6 +14,8 @@ stdenv.mkDerivation rec { sha256 = "18zsnsxc53pans4a01cs4401a2cjk3qi098hi440pj4zijifgcsb"; }; + outputs = [ "out" "dev" ]; + nativeBuildInputs = [ autoreconfHook ]; meta = with lib; { diff --git a/pkgs/development/libraries/lmdb/default.nix b/pkgs/development/libraries/lmdb/default.nix index dbc15f11c3aa2..a186f2993a462 100644 --- a/pkgs/development/libraries/lmdb/default.nix +++ b/pkgs/development/libraries/lmdb/default.nix @@ -46,6 +46,9 @@ stdenv.mkDerivation rec { Cflags: -I$dev/include Libs: -L$out/lib -llmdb EOF + + # Expected by Rust libraries. + ln -s lmdb.pc "$dev/lib/pkgconfig/liblmdb.pc" ''; meta = with lib; { diff --git a/pkgs/development/libraries/mesa/22.3.nix b/pkgs/development/libraries/mesa/22.3.nix deleted file mode 100644 index 1a1127dae508e..0000000000000 --- a/pkgs/development/libraries/mesa/22.3.nix +++ /dev/null @@ -1,4 +0,0 @@ -import ./generic.nix { - version = "22.3.7"; - hash = "sha256-iUzi9KHC52F3zdIoRiAZLQ2jBmskPuwvux18838TBCw="; -} diff --git a/pkgs/development/libraries/mesa/23.0.nix b/pkgs/development/libraries/mesa/23.0.nix deleted file mode 100644 index 323e001961816..0000000000000 --- a/pkgs/development/libraries/mesa/23.0.nix +++ /dev/null @@ -1,4 +0,0 @@ -import ./generic.nix { - version = "23.0.3"; - hash = "sha256-OGNipdgN87CWY2tn80Dhzme3BbRHZ9W90R0u0QNxktU="; -} diff --git a/pkgs/development/libraries/mesa/generic.nix b/pkgs/development/libraries/mesa/default.nix index ea7c1cb8b7b5b..38afcd174db33 100644 --- a/pkgs/development/libraries/mesa/generic.nix +++ b/pkgs/development/libraries/mesa/default.nix @@ -1,12 +1,10 @@ -{ version, hash }: - { stdenv, lib, fetchurl, fetchpatch , meson, pkg-config, ninja , intltool, bison, flex, file, python3Packages, wayland-scanner , expat, libdrm, xorg, wayland, wayland-protocols, openssl , llvmPackages_15, libffi, libomxil-bellagio, libva-minimal , libelf, libvdpau -, libglvnd, libunwind +, libglvnd, libunwind, lm_sensors , vulkan-loader, glslang , galliumDrivers ? if stdenv.isLinux then @@ -87,6 +85,9 @@ */ let + version = "23.1.1"; + hash = "sha256-omeQMe1bc7KcTwQqxk2W+DsM/khYYX3jLi78GWxlOkA="; + # Release calendar: https://www.mesa3d.org/release-calendar.html # Release frequency: https://www.mesa3d.org/releasing.html#schedule branch = lib.versions.major version; @@ -145,11 +146,6 @@ self = stdenv.mkDerivation { "get_option('datadir')" "'${placeholder "out"}/share'" substituteInPlace src/amd/vulkan/meson.build --replace \ "get_option('datadir')" "'${placeholder "out"}/share'" - '' - # TODO: can be removed >= 23.0.4 (most likely) - # https://gitlab.freedesktop.org/mesa/mesa/-/commit/035aa34ed5eb418339c0e2d2 - + '' - sed '/--size_t-is-usize/d' -i src/gallium/frontends/rusticl/meson.build ''; outputs = [ "out" "dev" "drivers" ] @@ -197,6 +193,10 @@ self = stdenv.mkDerivation { # To enable non-mesa gbm backends to be found (e.g. Nvidia) "-Dgbm-backends-path=${libglvnd.driverLink}/lib/gbm:${placeholder "out"}/lib/gbm" + + # meson auto_features enables these features, but we do not want them + "-Dandroid-libbacktrace=disabled" + ] ++ lib.optionals stdenv.isLinux [ "-Dglvnd=true" @@ -219,10 +219,9 @@ self = stdenv.mkDerivation { libX11 libXext libxcb libXt libXfixes libxshmfence libXrandr libffi libvdpau libelf libXvMC libpthreadstubs openssl /*or another sha1 provider*/ - zstd + zstd libunwind ] ++ lib.optionals haveWayland [ wayland wayland-protocols ] - ++ lib.optionals stdenv.isLinux [ libomxil-bellagio libva-minimal udev ] - ++ lib.optionals stdenv.isDarwin [ libunwind ] + ++ lib.optionals stdenv.isLinux [ libomxil-bellagio libva-minimal udev lm_sensors ] ++ lib.optionals enableOpenCL [ libclc llvmPackages.clang llvmPackages.clang-unwrapped rustc rust-bindgen' spirv-llvm-translator' ] ++ lib.optional withValgrind valgrind-light ++ lib.optional haveZink vulkan-loader @@ -253,6 +252,7 @@ self = stdenv.mkDerivation { if [ -n "$(shopt -s nullglob; echo "$out/lib/libxatracker"*)" -o -n "$(shopt -s nullglob; echo "$out/lib/libvulkan_"*)" ]; then # move gallium-related stuff to $drivers, so $out doesn't depend on LLVM mv -t $drivers/lib \ + $out/lib/libpowervr_rogue* \ $out/lib/libxatracker* \ $out/lib/libvulkan_* fi @@ -371,6 +371,9 @@ self = stdenv.mkDerivation { license = licenses.mit; # X11 variant, in most files platforms = platforms.mesaPlatforms; maintainers = with maintainers; [ primeos vcunat ]; # Help is welcome :) + + # https://gitlab.freedesktop.org/mesa/mesa/-/issues/8634 + broken = stdenv.isDarwin; }; }; diff --git a/pkgs/development/libraries/mesa/disk_cache-include-dri-driver-path-in-cache-key.patch b/pkgs/development/libraries/mesa/disk_cache-include-dri-driver-path-in-cache-key.patch index 445f26c6bd109..fe51c79d7a06e 100644 --- a/pkgs/development/libraries/mesa/disk_cache-include-dri-driver-path-in-cache-key.patch +++ b/pkgs/development/libraries/mesa/disk_cache-include-dri-driver-path-in-cache-key.patch @@ -10,16 +10,18 @@ diff --git a/meson_options.txt b/meson_options.txt index b8f753e2e1a..70d9071c8be 100644 --- a/meson_options.txt +++ b/meson_options.txt -@@ -452,6 +452,12 @@ option( +@@ -452,7 +452,14 @@ option( value : true, description : 'Enable direct rendering in GLX and EGL for DRI', ) + +option( + 'disk-cache-key', + type : 'string', + value : '', + description : 'Mesa cache key.' +) ++ option('egl-lib-suffix', type : 'string', value : '', diff --git a/pkgs/development/libraries/mlt/qt-5.nix b/pkgs/development/libraries/mlt/qt-5.nix index b7a881548d38e..e993cfcf8dede 100644 --- a/pkgs/development/libraries/mlt/qt-5.nix +++ b/pkgs/development/libraries/mlt/qt-5.nix @@ -27,13 +27,13 @@ mkDerivation rec { pname = "mlt"; - version = "7.14.0"; + version = "7.16.0"; src = fetchFromGitHub { owner = "mltframework"; repo = "mlt"; rev = "v${version}"; - sha256 = "sha256-BmvgDj/zgGJNpTy5A9XPOl+9001Kc0qSFSqQ3gwZPmI="; + sha256 = "sha256-Ed9CHaeJ8Rkrvfq/dZVOn/5lhHLH7B6A1Qf2xOQfWik="; }; buildInputs = [ diff --git a/pkgs/development/libraries/mpfr/default.nix b/pkgs/development/libraries/mpfr/default.nix index aba3a413a6682..cf5035948cb55 100644 --- a/pkgs/development/libraries/mpfr/default.nix +++ b/pkgs/development/libraries/mpfr/default.nix @@ -30,7 +30,7 @@ stdenv.mkDerivation rec { configureFlags = lib.optional stdenv.hostPlatform.isSunOS "--disable-thread-safe" ++ lib.optional stdenv.hostPlatform.is64bit "--with-pic" - ++ lib.optional stdenv.hostPlatform.isPower64 [ + ++ lib.optionals stdenv.hostPlatform.isPower64 [ # Without this, the `tget_set_d128` test experiences a link # error due to missing `__dpd_trunctdkf`. "--disable-decimal-float" diff --git a/pkgs/development/libraries/nettle/default.nix b/pkgs/development/libraries/nettle/default.nix index 1ce011a3231c0..3a1297f897636 100644 --- a/pkgs/development/libraries/nettle/default.nix +++ b/pkgs/development/libraries/nettle/default.nix @@ -1,10 +1,10 @@ { callPackage, fetchurl }: callPackage ./generic.nix rec { - version = "3.8.1"; + version = "3.9.1"; src = fetchurl { url = "mirror://gnu/nettle/nettle-${version}.tar.gz"; - hash = "sha256-Nk8+K3fNfc3oP9fEUhnINOVLDHXkKLb4lKI9Et1By/4="; + hash = "sha256-zP7/mBsMpxu9b7ywVPQHxg/7ZEOJpb6A1nFtW1UMbOM="; }; } diff --git a/pkgs/development/libraries/nghttp3/default.nix b/pkgs/development/libraries/nghttp3/default.nix index e7d57d457bde6..38e996330e71d 100644 --- a/pkgs/development/libraries/nghttp3/default.nix +++ b/pkgs/development/libraries/nghttp3/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "nghttp3"; - version = "0.10.0"; + version = "0.11.0"; src = fetchFromGitHub { owner = "ngtcp2"; repo = pname; rev = "v${version}"; - hash = "sha256-V0g/d1B9uMn7KZU6ShzyPGXOSAYCbz4ZubnhAwz+Qsc="; + hash = "sha256-fZMFSQ8RCVxuoLrisa8lLqjNVe4fIuGqbyKtkC/u02M="; }; outputs = [ "out" "dev" "doc" ]; diff --git a/pkgs/development/libraries/ngtcp2/default.nix b/pkgs/development/libraries/ngtcp2/default.nix index af8ef8623d512..e85a7674a2634 100644 --- a/pkgs/development/libraries/ngtcp2/default.nix +++ b/pkgs/development/libraries/ngtcp2/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "ngtcp2"; - version = "0.14.1"; + version = "0.15.0"; src = fetchFromGitHub { owner = "ngtcp2"; repo = pname; rev = "v${version}"; - hash = "sha256-VsacRYvjTWVx2ga952s1vs02GElXIW6umgcYr3UCcgE="; + hash = "sha256-FWNWpRuCUyqTIyLZkBFKrd2urjSCqHp20mBAXOcJm14="; }; outputs = [ "out" "dev" "doc" ]; diff --git a/pkgs/development/libraries/nlohmann_json/default.nix b/pkgs/development/libraries/nlohmann_json/default.nix index 3c8244c755320..29c7ca2c690bf 100644 --- a/pkgs/development/libraries/nlohmann_json/default.nix +++ b/pkgs/development/libraries/nlohmann_json/default.nix @@ -1,6 +1,7 @@ { stdenv , lib , fetchFromGitHub +, fetchpatch , cmake }: let @@ -21,6 +22,24 @@ in stdenv.mkDerivation (finalAttrs: { hash = "sha256-SUdhIV7tjtacf5DkoWk9cnkfyMlrkg8ZU7XnPZd22Tw="; }; + patches = [ + # Backport fix for gcc-13: + # https://github.com/nlohmann/json/pull/3895 + (fetchpatch { + name = "gcc-13-rebind.patch"; + url = "https://github.com/nlohmann/json/commit/a5b09d50b786638ed9deb09ef13860a3cb64eb6b.patch"; + hash = "sha256-Jbi0VwZP+ZHTGbpIwgKCVc66gOmwjkT5iOUe85eIzM0="; + }) + + # Backport fix for gcc-13: + # https://github.com/nlohmann/json/pull/3950 + (fetchpatch { + name = "gcc-13-eq-op.patch"; + url = "https://github.com/nlohmann/json/commit/a49829bd984c0282be18fcec070df0c31bf77dd5.patch"; + hash = "sha256-D+cRtdN6AXr4z3/y9Ui7Zqp3e/y10tp+DOL80ZtPz5E="; + }) + ]; + nativeBuildInputs = [ cmake ]; cmakeFlags = [ diff --git a/pkgs/development/libraries/nss/gcc-13-esr.patch b/pkgs/development/libraries/nss/gcc-13-esr.patch new file mode 100644 index 0000000000000..547ee0bd37618 --- /dev/null +++ b/pkgs/development/libraries/nss/gcc-13-esr.patch @@ -0,0 +1,44 @@ +https://bugzilla.mozilla.org/show_bug.cgi?id=1771273 +https://hg.mozilla.org/projects/nss/raw-rev/21e7aaa1f7d94bca15d997e5b4c2329b32fad21a + +# HG changeset patch +# User Sergei Trofimovich <slyich@gmail.com> +# Date 1653552519 0 +# Node ID 21e7aaa1f7d94bca15d997e5b4c2329b32fad21a +# Parent ad1046e9eee5f5dc17dac7c9343e2f7f0da44b4e +Bug 1771273 - cpputil/databuffer.h: add missing <cstdint> include r=nss-reviewers,mt + +Without the change build fails on this week's gcc-13 snapshot as: + + ../../cpputil/databuffer.h:20:20: error: 'uint8_t' does not name a type + 20 | DataBuffer(const uint8_t* d, size_t l) : data_(nullptr), len_(0) { + | ^~~~~~~ + ../../cpputil/databuffer.h:14:1: note: 'uint8_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'? + 13 | #include <iostream> + +++ |+#include <cstdint> + 14 | + +Differential Revision: https://phabricator.services.mozilla.com/D147404 + +diff --git a/cpputil/databuffer.h b/cpputil/databuffer.h +--- nss/cpputil/databuffer.h ++++ nss/cpputil/databuffer.h +@@ -6,16 +6,17 @@ + + #ifndef databuffer_h__ + #define databuffer_h__ + + #include <algorithm> + #include <cstring> + #include <iomanip> + #include <iostream> ++#include <cstdint> + + namespace nss_test { + + class DataBuffer { + public: + DataBuffer() : data_(nullptr), len_(0) {} + DataBuffer(const uint8_t* d, size_t l) : data_(nullptr), len_(0) { + Assign(d, l); + diff --git a/pkgs/development/libraries/nss/generic.nix b/pkgs/development/libraries/nss/generic.nix index be2196d6d2fc0..b2d1c1e15fd83 100644 --- a/pkgs/development/libraries/nss/generic.nix +++ b/pkgs/development/libraries/nss/generic.nix @@ -47,6 +47,11 @@ stdenv.mkDerivation rec { ./85_security_load_3.85+.patch ) ./fix-cross-compilation.patch + ] ++ lib.optionals (lib.versionOlder version "3.89") [ + # Backport gcc-13 build fix: + # https://bugzilla.mozilla.org/show_bug.cgi?id=1771273 + # https://hg.mozilla.org/projects/nss/raw-rev/21e7aaa1f7d94bca15d997e5b4c2329b32fad21a + ./gcc-13-esr.patch ]; patchFlags = [ "-p0" ]; diff --git a/pkgs/development/libraries/nuraft/default.nix b/pkgs/development/libraries/nuraft/default.nix index d8a56a7a5bfed..6d75ba99fc6a0 100644 --- a/pkgs/development/libraries/nuraft/default.nix +++ b/pkgs/development/libraries/nuraft/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, cmake, boost172, asio, openssl, zlib }: +{ lib, stdenv, fetchFromGitHub, cmake, boost, asio, openssl, zlib }: stdenv.mkDerivation rec { pname = "nuraft"; @@ -12,13 +12,13 @@ stdenv.mkDerivation rec { }; nativeBuildInputs = [ cmake ]; - buildInputs = [ boost172 asio openssl zlib ]; + buildInputs = [ boost asio openssl zlib ]; meta = with lib; { homepage = "https://github.com/eBay/NuRaft"; description = "C++ implementation of Raft core logic as a replication library"; license = licenses.asl20; - platforms = platforms.linux; maintainers = with maintainers; [ wheelsandmetal ]; + platforms = platforms.all; }; } diff --git a/pkgs/development/libraries/openal-soft/default.nix b/pkgs/development/libraries/openal-soft/default.nix index 8164a4264e6e3..496b7ac60fe00 100644 --- a/pkgs/development/libraries/openal-soft/default.nix +++ b/pkgs/development/libraries/openal-soft/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "openal-soft"; - version = "1.22.2"; + version = "1.23.1"; src = fetchFromGitHub { owner = "kcat"; repo = "openal-soft"; rev = version; - sha256 = "sha256-MVM0qCZDWcO7/Hnco+0dBqzBLcWD279xjx0slxxlc4w="; + sha256 = "sha256-jwY1NzNJdWIvVv7TvJyg4cIGFLWGZhL3BkMI1NbOEG0="; }; patches = [ diff --git a/pkgs/development/libraries/opencv/4.x.nix b/pkgs/development/libraries/opencv/4.x.nix index 5f99488486181..3f120e2558f39 100644 --- a/pkgs/development/libraries/opencv/4.x.nix +++ b/pkgs/development/libraries/opencv/4.x.nix @@ -2,6 +2,7 @@ , stdenv , fetchurl , fetchFromGitHub +, fetchpatch , cmake , pkg-config , unzip @@ -275,6 +276,21 @@ stdenv.mkDerivation { # Ensures that we use the system OpenEXR rather than the vendored copy of the source included with OpenCV. patches = [ ./cmake-don-t-use-OpenCVFindOpenEXR.patch + ] ++ lib.optionals enableContrib [ + (fetchpatch { + name = "CVE-2023-2617.patch"; + url = "https://github.com/opencv/opencv_contrib/commit/ccc277247ac1a7aef0a90353edcdec35fbc5903c.patch"; + stripLen = 2; + extraPrefix = [ "opencv_contrib/" ]; + sha256 = "sha256-drZ+DVn+Pk4zAZJ+LgX5u3Tz7MU0AEI/73EVvxDP3AU="; + }) + (fetchpatch { + name = "CVE-2023-2618.patch"; + url = "https://github.com/opencv/opencv_contrib/commit/ec406fa4748fb4b0630c1b986469e7918d5e8953.patch"; + stripLen = 2; + extraPrefix = [ "opencv_contrib/" ]; + sha256 = "sha256-cB5Tsh2fDOsc0BNtSzd6U/QoCjkd9yMW1QutUU69JJ0="; + }) ] ++ lib.optional enableCuda ./cuda_opt_flow.patch; # This prevents cmake from using libraries in impure paths (which diff --git a/pkgs/development/libraries/openexr/default.nix b/pkgs/development/libraries/openexr/default.nix index ba0263bcad13b..38e0fadd07389 100644 --- a/pkgs/development/libraries/openexr/default.nix +++ b/pkgs/development/libraries/openexr/default.nix @@ -28,13 +28,35 @@ stdenv.mkDerivation rec { extraPrefix = "OpenEXR/IlmImf/"; sha256 = "1wa2jn6sa0n3phaqvklnlbgk1bz60y756ad4jk4d757pzpnannsy"; }) + (fetchpatch { + name = "CVE-2021-3933.patch"; + url = "https://github.com/AcademySoftwareFoundation/openexr/commit/5db6f7aee79e3e75e8c3780b18b28699614dd08e.patch"; + stripLen = 4; + extraPrefix = "OpenEXR/IlmImf/"; + sha256 = "sha256-DrpldpNgN5pWKzIuuPIrynGX3EpP8YhJlu+lLfNFGxQ="; + }) + + # Backport gcc-13 fix: + # https://github.com/AcademySoftwareFoundation/openexr/pull/1264 + ./gcc-13.patch ]; + # tests are determined to use /var/tmp on unix + postPatch = '' + find . -name tmpDir.h | while read -r f ; do + substituteInPlace $f --replace '/var/tmp' "$TMPDIR" + done + ''; + cmakeFlags = lib.optional stdenv.hostPlatform.isStatic "-DCMAKE_SKIP_RPATH=ON"; nativeBuildInputs = [ cmake ]; propagatedBuildInputs = [ ilmbase zlib ]; + # https://github.com/AcademySoftwareFoundation/openexr/issues/1400 + # https://github.com/AcademySoftwareFoundation/openexr/issues/1281 + doCheck = !stdenv.isAarch32 && !stdenv.isi686; + meta = with lib; { description = "A high dynamic-range (HDR) image file format"; homepage = "https://www.openexr.com/"; diff --git a/pkgs/development/libraries/openexr/gcc-13.patch b/pkgs/development/libraries/openexr/gcc-13.patch new file mode 100644 index 0000000000000..d508b6028f76d --- /dev/null +++ b/pkgs/development/libraries/openexr/gcc-13.patch @@ -0,0 +1,33 @@ +https://github.com/AcademySoftwareFoundation/openexr/pull/1264 +https://github.com/AcademySoftwareFoundation/openexr/commit/d0088a3c6943a9a53fc24e29885414d082d531fe.patch + +--- a/OpenEXR/IlmImf/ImfDwaCompressor.cpp ++++ b/OpenEXR/IlmImf/ImfDwaCompressor.cpp +@@ -159,6 +159,7 @@ + #include <limits> + + #include <cstddef> ++#include <cstdint> + + + // Windows specific addition to prevent the indirect import of the redefined min/max macros +--- a/OpenEXR/IlmImf/ImfHuf.cpp ++++ b/OpenEXR/IlmImf/ImfHuf.cpp +@@ -53,6 +53,7 @@ + #include <cstring> + #include <cassert> + #include <algorithm> ++#include <cstdint> + + + using namespace std; +--- a/OpenEXR/IlmImf/ImfMisc.cpp ++++ b/OpenEXR/IlmImf/ImfMisc.cpp +@@ -52,6 +52,7 @@ + #include <ImfConvert.h> + #include <ImfPartType.h> + #include <ImfTileDescription.h> ++#include <cstdint> + #include "ImfNamespace.h" + + OPENEXR_IMF_INTERNAL_NAMESPACE_SOURCE_ENTER diff --git a/pkgs/development/libraries/openimageio/default.nix b/pkgs/development/libraries/openimageio/default.nix index b60b94b929105..cf717cc33f351 100644 --- a/pkgs/development/libraries/openimageio/default.nix +++ b/pkgs/development/libraries/openimageio/default.nix @@ -16,13 +16,13 @@ stdenv.mkDerivation rec { pname = "openimageio"; - version = "2.4.11.1"; + version = "2.4.12.0"; src = fetchFromGitHub { owner = "OpenImageIO"; repo = "oiio"; rev = "v${version}"; - hash = "sha256-Q8Gb/zscZre7fJPyLlZn04Xp3VFFbr6Z007mDPzownc="; + hash = "sha256-0Jilfe4jNNnpsbodJBFIyxjWqOA99MwmzAriwJgvqVs="; }; outputs = [ "bin" "out" "dev" "doc" ]; diff --git a/pkgs/development/libraries/openldap/default.nix b/pkgs/development/libraries/openldap/default.nix index 69c3316986600..0f659654e2438 100644 --- a/pkgs/development/libraries/openldap/default.nix +++ b/pkgs/development/libraries/openldap/default.nix @@ -34,6 +34,8 @@ stdenv.mkDerivation rec { "devdoc" ]; + __darwinAllowLocalNetworking = true; + enableParallelBuilding = true; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/openssl/default.nix b/pkgs/development/libraries/openssl/default.nix index 699f97c4d00ef..0449651090fe5 100644 --- a/pkgs/development/libraries/openssl/default.nix +++ b/pkgs/development/libraries/openssl/default.nix @@ -222,8 +222,8 @@ in { openssl_1_1 = common { - version = "1.1.1t"; - sha256 = "sha256-je6bJL2x3L8MPR6bAvuPa/IhZegH9Fret8lndTaFnTs="; + version = "1.1.1u"; + sha256 = "sha256-4vjYS1I+7NBse+diaDA3AwD7zBU4a/UULXJ1j2lj68Y="; patches = [ ./1.1/nix-ssl-cert-file.patch @@ -240,8 +240,8 @@ in { }; openssl_3 = common { - version = "3.0.8"; - sha256 = "sha256-bBPSvzj98x6sPOKjRwc2c/XWMmM5jx9p0N9KQSU+Sz4="; + version = "3.0.9"; + sha256 = "sha256-6xqwR4FHQ2D3fDGKuJ2MWgOrw45j1lpgPKu/GwCh3JA="; patches = [ ./3.0/nix-ssl-cert-file.patch diff --git a/pkgs/development/libraries/pdal/default.nix b/pkgs/development/libraries/pdal/default.nix index 16f9fb2e1a2de..1c5715eb32372 100644 --- a/pkgs/development/libraries/pdal/default.nix +++ b/pkgs/development/libraries/pdal/default.nix @@ -22,13 +22,13 @@ stdenv.mkDerivation rec { pname = "pdal"; - version = "2.4.3"; + version = "2.5.4"; src = fetchFromGitHub { owner = "PDAL"; repo = "PDAL"; rev = version; - sha256 = "sha256-9TQlhuGSTnHsTlJos9Hwnyl1CxI0tXLZdqsaGdp6WIE="; + sha256 = "sha256-WP74YMKYJ0VqsPkOzSfuFhSKM/aY5ynVVmDTP6/DmgA="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/podofo/0.10.x.nix b/pkgs/development/libraries/podofo/0.10.x.nix new file mode 100644 index 0000000000000..92231718c2615 --- /dev/null +++ b/pkgs/development/libraries/podofo/0.10.x.nix @@ -0,0 +1,67 @@ +{ lib +, stdenv +, fetchFromGitHub +, cmake +, expat +, fontconfig +, freetype +, libidn +, libjpeg +, libpng +, libtiff +, libxml2 +, lua5 +, openssl +, pkg-config +, zlib +}: + +stdenv.mkDerivation (finalAttrs: { + pname = "podofo"; + version = "0.10.0"; + + src = fetchFromGitHub { + owner = "podofo"; + repo = "podofo"; + rev = finalAttrs.version; + hash = "sha256-Z9mVAo2dITEtTdqA2sftaLZSCiTbGS02RYxfNcEwd1c="; + }; + + outputs = [ "out" "dev" "lib" ]; + + nativeBuildInputs = [ + cmake + pkg-config + ]; + + buildInputs = [ + expat + fontconfig + freetype + libidn + libjpeg + libpng + libtiff + libxml2 + lua5 + openssl + zlib + ]; + + cmakeFlags = [ + "-DPODOFO_BUILD_STATIC=${if stdenv.hostPlatform.isStatic then "ON" else "OFF"}" + "-DCMAKE_BUILD_WITH_INSTALL_NAME_DIR=ON" + ]; + + postInstall = '' + moveToOutput lib "$lib" + ''; + + meta = { + homepage = "https://github.com/podofo/podofo"; + description = "A library to work with the PDF file format"; + platforms = lib.platforms.all; + license = with lib.licenses; [ gpl2Plus lgpl2Plus ]; + maintainers = []; + }; +}) diff --git a/pkgs/development/libraries/qca-qt5/default.nix b/pkgs/development/libraries/qca-qt5/default.nix index 67d916dd14ee4..336a9e63ca63f 100644 --- a/pkgs/development/libraries/qca-qt5/default.nix +++ b/pkgs/development/libraries/qca-qt5/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "qca-qt5"; - version = "2.3.5"; + version = "2.3.6"; src = fetchurl { url = "http://download.kde.org/stable/qca/${version}/qca-${version}.tar.xz"; - sha256 = "sha256-kffZFqs2kr9ZkfClU7+BUxYb/doUvQBdSAorTjhDYug="; + sha256 = "sha256-7lnVMdS4L7FoX02NdMLKoHd/UBgA90JuqjchCaQwUkk="; }; buildInputs = [ openssl qtbase ]; diff --git a/pkgs/development/libraries/qt-5/5.15/srcs-generated.json b/pkgs/development/libraries/qt-5/5.15/srcs-generated.json index 03c409a381969..20649c6f83a1d 100644 --- a/pkgs/development/libraries/qt-5/5.15/srcs-generated.json +++ b/pkgs/development/libraries/qt-5/5.15/srcs-generated.json @@ -16,8 +16,8 @@ }, "qtbase": { "url": "https://invent.kde.org/qt/qt/qtbase.git", - "rev": "d3b21bc8b70eaa1af848371dc1d34c4617c1f73c", - "sha256": "11yww09fgcqsxv4sk4cflxdsdpdqc0x9b3qw63asfpwrnv9qry0a" + "rev": "a196623892558623e467f20b67edb78794252a09", + "sha256": "0yna2k1w595xwh9bk268h31fjl2ff8cm185dmm0v5gr4w8h9yr4g" }, "qtcharts": { "url": "https://invent.kde.org/qt/qt/qtcharts.git", @@ -26,8 +26,8 @@ }, "qtconnectivity": { "url": "https://invent.kde.org/qt/qt/qtconnectivity.git", - "rev": "0f9e49cde3b7ca40cd94e63d2f5d29f5b586d3d6", - "sha256": "1iwqa98ihzqqpqgwsj0lm4zkfwgag9k634sxjnx6gxvfq0h6d4nx" + "rev": "e6d37133affc71451129d84790c6c22227e64aff", + "sha256": "1bc1d0h2f1q0xfvr8p5fq1580bl8cs0qhdncm600v590z56cyika" }, "qtdatavis3d": { "url": "https://invent.kde.org/qt/qt/qtdatavis3d.git", @@ -36,8 +36,8 @@ }, "qtdeclarative": { "url": "https://invent.kde.org/qt/qt/qtdeclarative.git", - "rev": "0e1bed3c3e27d44d86d6f68a8b93b96a4821575c", - "sha256": "0v4c3pls67ww6ffiscbp05yb2vv583zrxj8p4jcy3yxa06khniy5" + "rev": "039ce261b0f8061f8485f9c2eaf497a4d4395baa", + "sha256": "1kp2pnwfcwsxhy2w1sdg722d0kb1i6kx3a9r42gl1i9d73k8afi2" }, "qtdoc": { "url": "https://invent.kde.org/qt/qt/qtdoc.git", @@ -61,8 +61,8 @@ }, "qtlocation": { "url": "https://invent.kde.org/qt/qt/qtlocation.git", - "rev": "2a8a48e9101236f118c2c4f0d79fae9c9d7b3f2a", - "sha256": "0ajvlqkm2641ahms34kg6a2hykvql1hxlm5nsaba7233hnfv3nsy" + "rev": "30fb93cf8521f2c0b3803903153d9034b7d7bcc2", + "sha256": "1b027hfc1m2nz0v906w08srmpyci3362arxc18cin334yhgghbx1" }, "qtlottie": { "url": "https://invent.kde.org/qt/qt/qtlottie.git", @@ -101,8 +101,8 @@ }, "qtquickcontrols2": { "url": "https://invent.kde.org/qt/qt/qtquickcontrols2.git", - "rev": "86a84eaa74c4071e5750f23b6e9911762880d391", - "sha256": "1zywq3ll49bzzvl6rzn4zpp96a4mdx0b9l5ic0x6zc4dr8c8jk5m" + "rev": "68a48018e34322edaf611639710b3edbe389e8c2", + "sha256": "04hswsamjmwgn63gs3rhxygvwjfqx5f0qifzp3gp6q4fw8lkgwpf" }, "qtquicktimeline": { "url": "https://invent.kde.org/qt/qt/qtquicktimeline.git", @@ -146,8 +146,8 @@ }, "qtsvg": { "url": "https://invent.kde.org/qt/qt/qtsvg.git", - "rev": "9b5ab29cbba1908fd4928e2bda2b93e418e36187", - "sha256": "0vnwhbkk40wj9rfy3fhjm9slra3y3j1mk67n3vnrzvmzrmpl4443" + "rev": "837b5163e17edbd3a9f098e9a1ab73febab419b4", + "sha256": "082i9q36d44g5a3jbw3ahvmmxikfai50wd2yq8xvkh8kr8xr7n5z" }, "qttools": { "url": "https://invent.kde.org/qt/qt/qttools.git", diff --git a/pkgs/development/libraries/qtstyleplugin-kvantum/default.nix b/pkgs/development/libraries/qtstyleplugin-kvantum/default.nix index 01458c0e7c6ea..af4f194efc807 100644 --- a/pkgs/development/libraries/qtstyleplugin-kvantum/default.nix +++ b/pkgs/development/libraries/qtstyleplugin-kvantum/default.nix @@ -5,8 +5,9 @@ , qmake , qtbase , qtsvg -, qtx11extras -, kwindowsystem +, qtx11extras ? null +, kwindowsystem ? null +, qtwayland , libX11 , libXext , qttools @@ -34,11 +35,10 @@ stdenv.mkDerivation rec { buildInputs = [ qtbase qtsvg - qtx11extras - kwindowsystem libX11 libXext - ]; + ] ++ lib.optionals (lib.versionOlder qtbase.version "6") [ qtx11extras kwindowsystem ] + ++ lib.optional (lib.versionAtLeast qtbase.version "6") qtwayland; sourceRoot = "source/Kvantum"; @@ -66,6 +66,6 @@ stdenv.mkDerivation rec { homepage = "https://github.com/tsujan/Kvantum"; license = licenses.gpl3Plus; platforms = platforms.linux; - maintainers = [ maintainers.romildo ]; + maintainers = with maintainers; [ romildo Scrumplex ]; }; } diff --git a/pkgs/development/libraries/qxlsx/default.nix b/pkgs/development/libraries/qxlsx/default.nix index 6251689d0e239..b6d92b964452c 100644 --- a/pkgs/development/libraries/qxlsx/default.nix +++ b/pkgs/development/libraries/qxlsx/default.nix @@ -1,21 +1,31 @@ { lib , stdenv , fetchFromGitHub +, fetchpatch , cmake , qtbase }: stdenv.mkDerivation rec { pname = "qxlsx"; - version = "1.4.5"; + version = "1.4.6"; src = fetchFromGitHub { owner = "QtExcel"; repo = "QXlsx"; rev = "v${version}"; - hash = "sha256-T+PUeml4O6uwY6DCAsBer4gDo+nrSGGus+yQv02CJcE="; + hash = "sha256-8plnvyb4sQRfEac1TVWgr2yrtAVAPKucgAnsybdUd3U="; }; + patches = [ + # Fix header include path + # https://github.com/QtExcel/QXlsx/pull/279 + (fetchpatch { + url = "https://github.com/QtExcel/QXlsx/commit/9d6db9efb92b93c3663ccfef3aec05267ba43723.patch"; + hash = "sha256-EbE5CNACAcgENCQh81lBZJ52hCIcBsFhNnYOS0Wr25I="; + }) + ]; + nativeBuildInputs = [ cmake ]; buildInputs = [ qtbase ]; diff --git a/pkgs/development/libraries/rdkafka/default.nix b/pkgs/development/libraries/rdkafka/default.nix index c1517084374a4..f0ff32d368f26 100644 --- a/pkgs/development/libraries/rdkafka/default.nix +++ b/pkgs/development/libraries/rdkafka/default.nix @@ -5,7 +5,7 @@ stdenv.mkDerivation rec { version = "2.1.1"; src = fetchFromGitHub { - owner = "edenhill"; + owner = "confluentinc"; repo = "librdkafka"; rev = "v${version}"; sha256 = "sha256-MwPRnD/S8o1gG6RWq2tKxqdpGum4FB5K8bHPAvlKW10="; @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "librdkafka - Apache Kafka C/C++ client library"; - homepage = "https://github.com/edenhill/librdkafka"; + homepage = "https://github.com/confluentinc/librdkafka"; license = licenses.bsd2; platforms = platforms.linux ++ platforms.darwin; maintainers = with maintainers; [ commandodev ]; diff --git a/pkgs/development/libraries/rocfft/default.nix b/pkgs/development/libraries/rocfft/default.nix index 535d27feff6f4..325de9151b4b1 100644 --- a/pkgs/development/libraries/rocfft/default.nix +++ b/pkgs/development/libraries/rocfft/default.nix @@ -1,199 +1,243 @@ -{ lib +{ rocfft +, lib , stdenv , fetchFromGitHub , rocmUpdateScript -, runCommand , cmake -, rocm-cmake -, rocrand , hip -, openmp -, sqlite , python3 -, gtest +, rocm-cmake +, sqlite , boost , fftw , fftwFloat -, buildTests ? false -, buildBenchmarks ? false +, gtest +, openmp +, rocrand +# NOTE: Update the default GPU targets on every update +, gpuTargets ? [ + "gfx803" + "gfx900" + "gfx906" + "gfx908" + "gfx90a" + "gfx1030" + "gfx1100" + "gfx1102" +] }: let - name-zero = "librocfft-device-0.so.0.1"; - name-one = "librocfft-device-1.so.0.1"; - name-two = "librocfft-device-2.so.0.1"; - name-three = "librocfft-device-3.so.0.1"; - - # This is over 3GB, to allow hydra caching we separate it - rf = stdenv.mkDerivation (finalAttrs: { - pname = "rocfft"; - version = "5.4.3"; - - outputs = [ - "out" - "libzero" - "libone" - "libtwo" - "libthree" - ] ++ lib.optionals buildTests [ - "test" - ] ++ lib.optionals buildBenchmarks [ - "benchmark" - ]; - - src = fetchFromGitHub { - owner = "ROCmSoftwarePlatform"; - repo = "rocFFT"; - rev = "rocm-${finalAttrs.version}"; - hash = "sha256-FsefE0B2hF5ZcHDB6TscwFeZ1NKFkWX7VDpEvvbDbOk="; - }; - - nativeBuildInputs = [ - cmake - rocm-cmake - hip - ]; - - buildInputs = [ - sqlite - python3 - ] ++ lib.optionals buildTests [ - gtest - ] ++ lib.optionals (buildTests || buildBenchmarks) [ - rocrand - boost - fftw - fftwFloat - openmp - ]; - - propagatedBuildInputs = lib.optionals buildTests [ - fftw - fftwFloat - ]; - - cmakeFlags = [ - "-DCMAKE_C_COMPILER=hipcc" - "-DCMAKE_CXX_COMPILER=hipcc" - "-DUSE_HIP_CLANG=ON" - "-DSQLITE_USE_SYSTEM_PACKAGE=ON" - # Manually define CMAKE_INSTALL_<DIR> - # See: https://github.com/NixOS/nixpkgs/pull/197838 - "-DCMAKE_INSTALL_BINDIR=bin" - "-DCMAKE_INSTALL_LIBDIR=lib" - "-DCMAKE_INSTALL_INCLUDEDIR=include" - ] ++ lib.optionals buildTests [ - "-DBUILD_CLIENTS_TESTS=ON" - ] ++ lib.optionals buildBenchmarks [ - "-DBUILD_CLIENTS_RIDER=ON" - "-DBUILD_CLIENTS_SAMPLES=ON" - ]; - - postInstall = '' - mv $out/lib/${name-zero} $libzero - mv $out/lib/${name-one} $libone - mv $out/lib/${name-two} $libtwo - mv $out/lib/${name-three} $libthree - ln -s $libzero $out/lib/${name-zero} - ln -s $libone $out/lib/${name-one} - ln -s $libtwo $out/lib/${name-two} - ln -s $libthree $out/lib/${name-three} - '' + lib.optionalString buildTests '' - mkdir -p $test/{bin,lib/fftw} - cp -a $out/bin/* $test/bin - ln -s ${fftw}/lib/libfftw*.so $test/lib/fftw - ln -s ${fftwFloat}/lib/libfftw*.so $test/lib/fftw - rm -r $out/lib/fftw - rm $test/bin/{rocfft_rtc_helper,*-rider} || true - '' + lib.optionalString buildBenchmarks '' - mkdir -p $benchmark/bin - cp -a $out/bin/* $benchmark/bin - rm $benchmark/bin/{rocfft_rtc_helper,*-test} || true - '' + lib.optionalString (buildTests || buildBenchmarks ) '' - mv $out/bin/rocfft_rtc_helper $out - rm -r $out/bin/* - mv $out/rocfft_rtc_helper $out/bin + # To avoid output limit exceeded errors in hydra, we build kernel + # device libs and the kernel RTC cache database in separate derivations + kernelDeviceLibs = map + (target: + (rocfft.overrideAttrs (prevAttrs: { + pname = "rocfft-device-${target}"; + + patches = prevAttrs.patches ++ [ + # Add back install rule for device library + # This workaround is needed because rocm_install_targets + # doesn't support an EXCLUDE_FROM_ALL option + ./device-install.patch + ]; + + buildFlags = [ "rocfft-device-${target}" ]; + + installPhase = '' + runHook preInstall + cmake --install . --component device + runHook postInstall + ''; + + requiredSystemFeatures = [ "big-parallel" ]; + })).override { + gpuTargets = [ target ]; + } + ) + gpuTargets; + + # TODO: Figure out how to also split this by GPU target + # + # It'll be bit more complicated than what we're doing for the kernel + # device libs, because the kernel cache needs to be compiled into + # one sqlite database (whereas the device libs can be linked into + # rocfft as separate libraries for each GPU target). + # + # It's not clear why this needs to even be a db in the first place. + # It would simplify things A LOT if we could just store these + # pre-compiled kernels as files (but that'd need a lot of patching). + kernelRtcCache = rocfft.overrideAttrs (_: { + pname = "rocfft-kernel-cache"; + + buildFlags = [ "rocfft_kernel_cache_target" ]; + + installPhase = '' + runHook preInstall + cmake --install . --component kernel_cache + runHook postInstall ''; - passthru.updateScript = rocmUpdateScript { - name = finalAttrs.pname; - owner = finalAttrs.src.owner; - repo = finalAttrs.src.repo; - }; - - meta = with lib; { - description = "FFT implementation for ROCm "; - homepage = "https://github.com/ROCmSoftwarePlatform/rocFFT"; - license = with licenses; [ mit ]; - maintainers = teams.rocm.members; - platforms = platforms.linux; - broken = versions.minor finalAttrs.version != versions.minor hip.version; - }; + requiredSystemFeatures = [ "big-parallel" ]; }); +in +stdenv.mkDerivation (finalAttrs: { + pname = "rocfft"; + version = "5.4.3"; + + src = fetchFromGitHub { + owner = "ROCmSoftwarePlatform"; + repo = "rocFFT"; + rev = "rocm-${finalAttrs.version}"; + hash = "sha256-FsefE0B2hF5ZcHDB6TscwFeZ1NKFkWX7VDpEvvbDbOk="; + }; + + patches = [ + # Exclude kernel compilation & installation from "all" target, + # and split device libraries by GPU target + ./split-kernel-compilation.patch + ]; - rf-zero = runCommand name-zero { preferLocalBuild = true; } '' - cp -a ${rf.libzero} $out - ''; + nativeBuildInputs = [ + cmake + hip + python3 + rocm-cmake + ]; - rf-one = runCommand name-one { preferLocalBuild = true; } '' - cp -a ${rf.libone} $out - ''; + buildInputs = [ + sqlite + ] ++ lib.optionals (finalAttrs.pname == "rocfft") kernelDeviceLibs; + + cmakeFlags = [ + "-DCMAKE_C_COMPILER=hipcc" + "-DCMAKE_CXX_COMPILER=hipcc" + "-DUSE_HIP_CLANG=ON" + "-DSQLITE_USE_SYSTEM_PACKAGE=ON" + # Manually define CMAKE_INSTALL_<DIR> + # See: https://github.com/NixOS/nixpkgs/pull/197838 + "-DCMAKE_INSTALL_BINDIR=bin" + "-DCMAKE_INSTALL_LIBDIR=lib" + "-DCMAKE_INSTALL_INCLUDEDIR=include" + "-DAMDGPU_TARGETS=${lib.concatStringsSep ";" gpuTargets}" + ]; - rf-two = runCommand name-two { preferLocalBuild = true; } '' - cp -a ${rf.libtwo} $out + postInstall = lib.optionalString (finalAttrs.pname == "rocfft") '' + ln -s ${kernelRtcCache}/lib/rocfft_kernel_cache.db "$out/lib" ''; - rf-three = runCommand name-three { preferLocalBuild = true; } '' - cp -a ${rf.libthree} $out - ''; -in stdenv.mkDerivation { - inherit (rf) pname version src passthru meta; - - outputs = [ - "out" - ] ++ lib.optionals buildTests [ - "test" - ] ++ lib.optionals buildBenchmarks [ - "benchmark" - ]; + passthru = { + test = stdenv.mkDerivation { + pname = "${finalAttrs.pname}-test"; + inherit (finalAttrs) version src; + + sourceRoot = "source/clients/tests"; + + nativeBuildInputs = [ + cmake + hip + rocm-cmake + ]; + + buildInputs = [ + boost + fftw + fftwFloat + finalAttrs.finalPackage + gtest + openmp + rocrand + ]; + + cmakeFlags = [ + "-DCMAKE_C_COMPILER=hipcc" + "-DCMAKE_CXX_COMPILER=hipcc" + ]; + + postInstall = '' + rm -r "$out/lib/fftw" + rmdir "$out/lib" + ''; + }; - dontUnpack = true; - dontPatch = true; - dontConfigure = true; - dontBuild = true; - - installPhase = '' - runHook preInstall - - mkdir -p $out/lib - ln -sf ${rf-zero} $out/lib/${name-zero} - ln -sf ${rf-one} $out/lib/${name-one} - ln -sf ${rf-two} $out/lib/${name-two} - ln -sf ${rf-three} $out/lib/${name-three} - cp -an ${rf}/* $out - '' + lib.optionalString buildTests '' - cp -a ${rf.test} $test - '' + lib.optionalString buildBenchmarks '' - cp -a ${rf.benchmark} $benchmark - '' + '' - runHook postInstall - ''; + benchmark = stdenv.mkDerivation { + pname = "${finalAttrs.pname}-benchmark"; + inherit (finalAttrs) version src; + + sourceRoot = "source/clients/rider"; + + nativeBuildInputs = [ + cmake + hip + rocm-cmake + ]; + + buildInputs = [ + boost + finalAttrs.finalPackage + openmp + (python3.withPackages (ps: with ps; [ + pandas + scipy + ])) + rocrand + ]; + + cmakeFlags = [ + "-DCMAKE_C_COMPILER=hipcc" + "-DCMAKE_CXX_COMPILER=hipcc" + ]; + + postInstall = '' + cp -a ../../../scripts/perf "$out/bin" + ''; + }; - # Fix paths - preFixup = '' - substituteInPlace $out/include/*.h $out/rocfft/include/*.h \ - --replace "${rf}" "$out" - - patchelf --set-rpath \ - $(patchelf --print-rpath $out/lib/librocfft.so | sed 's,${rf}/lib,'"$out/lib"',') \ - $out/lib/librocfft.so - '' + lib.optionalString buildTests '' - patchelf --set-rpath \ - $(patchelf --print-rpath $test/bin/rocfft-test | sed 's,${rf}/lib,'"$out/lib"',') \ - $test/bin/rocfft-test - '' + lib.optionalString buildBenchmarks '' - patchelf --set-rpath \ - $(patchelf --print-rpath $benchmark/bin/rocfft-rider | sed 's,${rf}/lib,'"$out/lib"',') \ - $benchmark/bin/rocfft-rider - ''; -} + samples = stdenv.mkDerivation { + pname = "${finalAttrs.pname}-samples"; + inherit (finalAttrs) version src; + + sourceRoot = "source/clients/samples"; + + nativeBuildInputs = [ + cmake + hip + rocm-cmake + ]; + + buildInputs = [ + boost + finalAttrs.finalPackage + openmp + rocrand + ]; + + cmakeFlags = [ + "-DCMAKE_C_COMPILER=hipcc" + "-DCMAKE_CXX_COMPILER=hipcc" + ]; + + installPhase = '' + runHook preInstall + mkdir "$out" + cp -a bin "$out" + runHook postInstall + ''; + }; + + updateScript = rocmUpdateScript { + name = finalAttrs.pname; + owner = finalAttrs.src.owner; + repo = finalAttrs.src.repo; + }; + }; + + meta = with lib; { + description = "FFT implementation for ROCm"; + homepage = "https://github.com/ROCmSoftwarePlatform/rocFFT"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ kira-bruneau ] ++ teams.rocm.members; + platforms = platforms.linux; + broken = versions.minor finalAttrs.version != versions.minor hip.version; + }; +}) diff --git a/pkgs/development/libraries/rocfft/device-install.patch b/pkgs/development/libraries/rocfft/device-install.patch new file mode 100644 index 0000000000000..355cf30d07ff1 --- /dev/null +++ b/pkgs/development/libraries/rocfft/device-install.patch @@ -0,0 +1,15 @@ +diff --git a/library/src/device/CMakeLists.txt b/library/src/device/CMakeLists.txt +index 73a8ec9..9bfd4b8 100644 +--- a/library/src/device/CMakeLists.txt ++++ b/library/src/device/CMakeLists.txt +@@ -255,4 +255,10 @@ foreach( sub ${AMDGPU_TARGETS} ) + if( NOT BUILD_SHARED_LIBS ) + set_target_properties( rocfft-device-${sub} PROPERTIES PREFIX "lib" ) + endif( ) ++ ++ rocm_install_targets( ++ TARGETS ++ rocfft-device-${sub} ++ COMPONENT device ++ ) + endforeach() diff --git a/pkgs/development/libraries/rocfft/split-kernel-compilation.patch b/pkgs/development/libraries/rocfft/split-kernel-compilation.patch new file mode 100644 index 0000000000000..5d71fe399c1a5 --- /dev/null +++ b/pkgs/development/libraries/rocfft/split-kernel-compilation.patch @@ -0,0 +1,124 @@ +diff --git a/library/src/CMakeLists.txt b/library/src/CMakeLists.txt +index 3a16304..606b711 100644 +--- a/library/src/CMakeLists.txt ++++ b/library/src/CMakeLists.txt +@@ -250,12 +250,12 @@ foreach( target + + endforeach() + +-add_executable( rocfft_aot_helper ++add_executable( rocfft_aot_helper EXCLUDE_FROM_ALL + rocfft_aot_helper.cpp + rocfft_stub.cpp + ) + +-add_executable( rocfft_config_search ++add_executable( rocfft_config_search EXCLUDE_FROM_ALL + rocfft_config_search.cpp + rocfft_stub.cpp + ) +@@ -279,10 +279,10 @@ endif() + + target_link_libraries( rocfft PRIVATE ${ROCFFT_DEVICE_LINK_LIBS} ) + +-target_link_libraries( rocfft PRIVATE rocfft-device-0 ) +-target_link_libraries( rocfft PRIVATE rocfft-device-1 ) +-target_link_libraries( rocfft PRIVATE rocfft-device-2 ) +-target_link_libraries( rocfft PRIVATE rocfft-device-3 ) ++foreach( sub ${AMDGPU_TARGETS} ) ++ target_link_libraries( rocfft PRIVATE -lrocfft-device-${sub} ) ++endforeach() ++ + foreach( target rocfft rocfft_aot_helper rocfft_config_search ) + # RTC uses dladdr to find the RTC helper program + if( NOT WIN32 ) +@@ -347,7 +347,7 @@ add_custom_command( + DEPENDS rocfft_aot_helper rocfft_rtc_helper + COMMENT "Compile kernels into shipped cache file" + ) +-add_custom_target( rocfft_kernel_cache_target ALL ++add_custom_target( rocfft_kernel_cache_target + DEPENDS rocfft_kernel_cache.db + VERBATIM + ) +@@ -392,7 +392,8 @@ else() + endif() + rocm_install(FILES ${ROCFFT_KERNEL_CACHE_PATH} + DESTINATION "${ROCFFT_KERNEL_CACHE_INSTALL_DIR}" +- COMPONENT runtime ++ COMPONENT kernel_cache ++ EXCLUDE_FROM_ALL + ) + + # PERMISSIONS OWNER_EXECUTE OWNER_WRITE OWNER_READ GROUP_EXECUTE GROUP_READ WORLD_EXECUTE WORLD_READ +diff --git a/library/src/device/CMakeLists.txt b/library/src/device/CMakeLists.txt +index 9f7b85f..73a8ec9 100644 +--- a/library/src/device/CMakeLists.txt ++++ b/library/src/device/CMakeLists.txt +@@ -170,11 +170,11 @@ list( SORT rocfft_device_source ) + # functions callable by rocFFT and depends on amdhip64, and another + # one usable by AOT RTC that contains no device code + list( FILTER rocfft_device_source EXCLUDE REGEX function_pool.cpp ) +-add_library( rocfft-function-pool OBJECT ++add_library( rocfft-function-pool OBJECT EXCLUDE_FROM_ALL + function_pool.cpp + ) + target_compile_definitions( rocfft-function-pool PRIVATE FUNCTION_POOL_STANDALONE_BODY= ) +-add_library( rocfft-function-pool-standalone OBJECT ++add_library( rocfft-function-pool-standalone OBJECT EXCLUDE_FROM_ALL + function_pool.cpp + ) + target_compile_definitions( rocfft-function-pool-standalone PRIVATE FUNCTION_POOL_STANDALONE_BODY={} ) +@@ -193,26 +193,15 @@ foreach( pool rocfft-function-pool rocfft-function-pool-standalone ) + add_dependencies(${pool} gen_headers_target) + endforeach() + +-list( LENGTH rocfft_device_source rocfft_device_source_len ) +-math(EXPR split_len "${rocfft_device_source_len} / 4") +-math(EXPR split_idx_2 "${rocfft_device_source_len} / 4 * 2") +-math(EXPR split_idx_3 "${rocfft_device_source_len} / 4 * 3") +- +-list( SUBLIST rocfft_device_source 0 ${split_len} rocfft_device_source_0 ) +-list( SUBLIST rocfft_device_source ${split_len} ${split_len} rocfft_device_source_1 ) +-list( SUBLIST rocfft_device_source ${split_idx_2} ${split_len} rocfft_device_source_2 ) +-list( SUBLIST rocfft_device_source ${split_idx_3} -1 rocfft_device_source_3 ) +- +-foreach( sub RANGE 3 ) +- set( rocfft_device_source_var rocfft_device_source_${sub} ) ++foreach( sub ${AMDGPU_TARGETS} ) + if(NOT SINGLELIB) +- add_library( rocfft-device-${sub} +- ${${rocfft_device_source_var}} ) ++ add_library( rocfft-device-${sub} EXCLUDE_FROM_ALL ++ ${rocfft_device_source} ) + else() + # Compile the device lib as a static library, which is then linked + # into librocfft.so Useful for testing purposes. +- add_library( rocfft-device-${sub} STATIC +- ${${rocfft_device_source_var}} ) ++ add_library( rocfft-device-${sub} STATIC EXCLUDE_FROM_ALL ++ ${rocfft_device_source} ) + + # if we're building singlelib, we don't want to export any of the + # device library symbols to the main library +@@ -241,9 +230,7 @@ foreach( sub RANGE 3 ) + # Set AMD GPU architecture options + + # Enable compilation of desired architectures +- foreach( target ${AMDGPU_TARGETS} ) +- target_compile_options( rocfft-device-${sub} PRIVATE --offload-arch=${target} ) +- endforeach( ) ++ target_compile_options( rocfft-device-${sub} PRIVATE --offload-arch=${sub} ) + + target_include_directories( rocfft-device-${sub} + PRIVATE $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}> +@@ -268,9 +255,4 @@ foreach( sub RANGE 3 ) + if( NOT BUILD_SHARED_LIBS ) + set_target_properties( rocfft-device-${sub} PROPERTIES PREFIX "lib" ) + endif( ) +- +- rocm_install_targets( +- TARGETS +- rocfft-device-${sub} +- ) + endforeach() diff --git a/pkgs/development/libraries/s2n-tls/default.nix b/pkgs/development/libraries/s2n-tls/default.nix index 6ee476ae94597..be49af907cbf1 100644 --- a/pkgs/development/libraries/s2n-tls/default.nix +++ b/pkgs/development/libraries/s2n-tls/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "s2n-tls"; - version = "1.3.44"; + version = "1.3.45"; src = fetchFromGitHub { owner = "aws"; repo = pname; rev = "v${version}"; - sha256 = "sha256-8YF9PhxTrXQBTUJvTrJZFDVijQecTeZ1ayGuvQRqGEE="; + sha256 = "sha256-ZipZXCwat3H0NoUX9T6XB7/qMRvViB2QrYpgj0U41nU="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/sbc/default.nix b/pkgs/development/libraries/sbc/default.nix index edab4037a154b..7cdd3072c56c2 100644 --- a/pkgs/development/libraries/sbc/default.nix +++ b/pkgs/development/libraries/sbc/default.nix @@ -2,13 +2,15 @@ stdenv.mkDerivation rec { pname = "sbc"; - version = "1.4"; + version = "2.0"; src = fetchurl { url = "https://www.kernel.org/pub/linux/bluetooth/${pname}-${version}.tar.xz"; - sha256 = "1jal98pnrjkzxlkiqy0ykh4qmgnydz9bmsp1jn581p5kddpg92si"; + sha256 = "sha256-jxI2jh279V4UU2UgRzz7M4yEs5KTnMm2Qpg2D9SgeZI="; }; + outputs = [ "out" "dev" ]; + nativeBuildInputs = [ pkg-config ]; buildInputs = [ libsndfile ]; diff --git a/pkgs/development/libraries/science/biology/ciftilib/default.nix b/pkgs/development/libraries/science/biology/ciftilib/default.nix index 797607ed8f545..85b0b1c8a0e5b 100644 --- a/pkgs/development/libraries/science/biology/ciftilib/default.nix +++ b/pkgs/development/libraries/science/biology/ciftilib/default.nix @@ -24,13 +24,16 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DCMAKE_CTEST_ARGUMENTS=--exclude-regex;'big|datatype-md5'" ]; + # error: no member named 'file_string' in 'boost::filesystem::path' + env.NIX_CFLAGS_COMPILE = "-UCIFTILIB_BOOST_NO_FSV3"; + doCheck = true; meta = with lib; { homepage = "https://github.com/Washington-University/CiftiLib"; description = "Library for reading and writing CIFTI files"; maintainers = with maintainers; [ bcdarwin ]; - platforms = platforms.linux; + platforms = platforms.unix; license = licenses.bsd2; }; } diff --git a/pkgs/development/libraries/science/chemistry/plumed/default.nix b/pkgs/development/libraries/science/chemistry/plumed/default.nix index 8c308cf2df5be..b825c8270d628 100644 --- a/pkgs/development/libraries/science/chemistry/plumed/default.nix +++ b/pkgs/development/libraries/science/chemistry/plumed/default.nix @@ -8,13 +8,13 @@ assert !blas.isILP64; stdenv.mkDerivation rec { pname = "plumed"; - version = "2.8.2"; + version = "2.9.0"; src = fetchFromGitHub { owner = "plumed"; repo = "plumed2"; rev = "v${version}"; - hash = "sha256-ugYhJq8KFjT8rkAOX/yZ9IlEklXCwRxKH49REd2QN9E="; + hash = "sha256-yL+59f908IhbxGIylI1ydi1BPZwAapjK/vP4/h5gcHk="; }; postPatch = '' diff --git a/pkgs/development/libraries/science/math/clblast/default.nix b/pkgs/development/libraries/science/math/clblast/default.nix new file mode 100644 index 0000000000000..281076caba9fb --- /dev/null +++ b/pkgs/development/libraries/science/math/clblast/default.nix @@ -0,0 +1,44 @@ +{ lib +, stdenv +, fetchFromGitHub +, cmake +, ninja +, opencl-headers +, ocl-icd +}: + +stdenv.mkDerivation rec { + pname = "clblast"; + version = "1.6.0"; + + src = fetchFromGitHub { + owner = "CNugteren"; + repo = "CLBlast"; + rev = version; + hash = "sha256-eRwSfP6p0+9yql7TiXZsExRMcnnBLXXW2hh1JliYU2I="; + }; + + nativeBuildInputs = [ + cmake + ninja + ]; + + buildInputs = [ + opencl-headers + ocl-icd + ]; + + cmakeFlags = [ + # https://github.com/NixOS/nixpkgs/issues/144170 + "-DCMAKE_INSTALL_INCLUDEDIR=include" + "-DCMAKE_INSTALL_LIBDIR=lib" + ]; + + meta = with lib; { + description = "The tuned OpenCL BLAS library"; + homepage = "https://github.com/CNugteren/CLBlast"; + license = licenses.asl20; + maintainers = with maintainers; [ Tungsten842 ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/development/libraries/science/robotics/ispike/default.nix b/pkgs/development/libraries/science/robotics/ispike/default.nix index b3eed2e326e6f..28a38b7056ddc 100644 --- a/pkgs/development/libraries/science/robotics/ispike/default.nix +++ b/pkgs/development/libraries/science/robotics/ispike/default.nix @@ -9,6 +9,10 @@ stdenv.mkDerivation rec { sha256 = "0khrxp43bi5kisr8j4lp9fl4r5marzf7b4inys62ac108sfb28lp"; }; + postPatch = '' + sed -i "1i #include <map>" include/iSpike/YarpConnection.hpp + ''; + nativeBuildInputs = [ cmake ]; buildInputs = [ boost ]; @@ -16,7 +20,7 @@ stdenv.mkDerivation rec { description = "Spiking neural interface between iCub and a spiking neural simulator"; homepage = "https://sourceforge.net/projects/ispike/"; license = lib.licenses.lgpl3; - platforms = lib.platforms.linux; + platforms = lib.platforms.unix; maintainers = [ lib.maintainers.nico202 ]; }; } diff --git a/pkgs/development/libraries/sentry-native/default.nix b/pkgs/development/libraries/sentry-native/default.nix index 536ce321b973b..7857c6e42db6f 100644 --- a/pkgs/development/libraries/sentry-native/default.nix +++ b/pkgs/development/libraries/sentry-native/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "sentry-native"; - version = "0.6.2"; + version = "0.6.3"; src = fetchFromGitHub { owner = "getsentry"; repo = "sentry-native"; rev = version; - hash = "sha256-cKDKdwkmvmB7O5tvCYtAHFdZFlcTk3I95AuA0dr+oX8="; + hash = "sha256-GefuMsMFmNyAn+xmnRqUjyWFHqiF/kIzqBCF6mk3vx0="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/silgraphite/graphite2.nix b/pkgs/development/libraries/silgraphite/graphite2.nix index 11b430a00e546..5e7358fa15f9a 100644 --- a/pkgs/development/libraries/silgraphite/graphite2.nix +++ b/pkgs/development/libraries/silgraphite/graphite2.nix @@ -17,6 +17,8 @@ stdenv.mkDerivation rec { sha256 = "1790ajyhk0ax8xxamnrk176gc9gvhadzy78qia4rd8jzm89ir7gr"; }; + outputs = [ "out" "dev" ]; + nativeBuildInputs = [ pkg-config cmake ]; buildInputs = [ freetype ]; diff --git a/pkgs/development/libraries/sioclient/default.nix b/pkgs/development/libraries/sioclient/default.nix new file mode 100644 index 0000000000000..2a4cd3c8e91ce --- /dev/null +++ b/pkgs/development/libraries/sioclient/default.nix @@ -0,0 +1,38 @@ +{ lib +, stdenv +, fetchFromGitHub +, cmake +, asio +, rapidjson +, websocketpp +}: + +stdenv.mkDerivation { + pname = "sioclient"; + version = "unstable-2023-02-13"; + + src = fetchFromGitHub { + owner = "socketio"; + repo = "socket.io-client-cpp"; + rev = "b10474e3eaa6b27e75dbc1382ac9af74fdf3fa85"; + hash = "sha256-bkuFA6AvZvBpnO6Lixqx8Ux5Dy5NHWGB2y1VF7allC0="; + }; + + nativeBuildInputs = [ + cmake + ]; + + buildInputs = [ + asio + rapidjson + websocketpp + ]; + + meta = with lib; { + description = "C++11 implementation of Socket.IO client"; + homepage = "https://github.com/socketio/socket.io-client-cpp"; + license = licenses.mit; + maintainers = with maintainers; [ wegank ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/development/libraries/sord/default.nix b/pkgs/development/libraries/sord/default.nix index efb8bf0b89529..54ae9261f8109 100644 --- a/pkgs/development/libraries/sord/default.nix +++ b/pkgs/development/libraries/sord/default.nix @@ -21,6 +21,8 @@ stdenv.mkDerivation rec { hash = "sha256-S22Szpg6iXeana5t6EpbOtRstthgrJ4Z2cBrf7a9ZBk="; }; + outputs = [ "out" "dev" "doc" "man" ]; + nativeBuildInputs = [ doxygen meson diff --git a/pkgs/development/libraries/spice/default.nix b/pkgs/development/libraries/spice/default.nix index 25e60397b3574..d7855cd5cea5a 100644 --- a/pkgs/development/libraries/spice/default.nix +++ b/pkgs/development/libraries/spice/default.nix @@ -27,11 +27,11 @@ stdenv.mkDerivation rec { pname = "spice"; - version = "0.15.1"; + version = "0.15.2"; src = fetchurl { url = "https://www.spice-space.org/download/releases/spice-server/${pname}-${version}.tar.bz2"; - sha256 = "ramvZ6syGRa9frWePWGaSneWwIooxzLt/H8C/ICxo3o="; + sha256 = "sha256-bZ62EX8DkXRxxLwQAEq+z/SKefuF64WhxF8CM3cBW4E="; }; patches = [ @@ -82,7 +82,7 @@ stdenv.mkDerivation rec { postPatch = '' patchShebangs build-aux - # Forgotten in 0.15.1 tarball + # Forgotten in 0.15.2 tarball sed -i /meson.add_dist_script/d meson.build ''; diff --git a/pkgs/development/libraries/sqlite/default.nix b/pkgs/development/libraries/sqlite/default.nix index 961a0c9e31954..a3006e1236a6b 100644 --- a/pkgs/development/libraries/sqlite/default.nix +++ b/pkgs/development/libraries/sqlite/default.nix @@ -15,13 +15,13 @@ in stdenv.mkDerivation rec { pname = "sqlite${lib.optionalString interactive "-interactive"}"; - version = "3.41.2"; + version = "3.42.0"; # nixpkgs-update: no auto update # NB! Make sure to update ./tools.nix src (in the same directory). src = fetchurl { url = "https://sqlite.org/2023/sqlite-autoconf-${archiveVersion version}.tar.gz"; - hash = "sha256-6YwQDdHaTjD6Rgdh2rfAuRpQt4XhZ/jFesxGUU+ulJk="; + hash = "sha256-erz9FhxuJ0LKXGwIldH4U8lA8gMwSgtJ2k4eyl0IjKY="; }; outputs = [ "bin" "dev" "out" ]; diff --git a/pkgs/development/libraries/sqlite/tools.nix b/pkgs/development/libraries/sqlite/tools.nix index 9943184bd1f36..c30ce8d45d9a2 100644 --- a/pkgs/development/libraries/sqlite/tools.nix +++ b/pkgs/development/libraries/sqlite/tools.nix @@ -4,12 +4,12 @@ let archiveVersion = import ./archive-version.nix lib; mkTool = { pname, makeTarget, description, homepage, mainProgram }: stdenv.mkDerivation rec { inherit pname; - version = "3.41.2"; + version = "3.42.0"; # nixpkgs-update: no auto update src = assert version == sqlite.version; fetchurl { url = "https://sqlite.org/2023/sqlite-src-${archiveVersion version}.zip"; - hash = "sha256-hxkfzsuLcH2aEO2xNgdoYxfXFpwIC5vcXTnQY1g3bMw="; + hash = "sha256-OMpWoxe+N/sAvZK8KA2bkgm9QAiyl9SDxB7B9geb+20="; }; nativeBuildInputs = [ unzip ]; diff --git a/pkgs/development/libraries/tbox/default.nix b/pkgs/development/libraries/tbox/default.nix new file mode 100644 index 0000000000000..5c622cfe66563 --- /dev/null +++ b/pkgs/development/libraries/tbox/default.nix @@ -0,0 +1,37 @@ +{ lib +, stdenv +, fetchFromGitHub +}: + +stdenv.mkDerivation rec { + pname = "tbox"; + version = "1.7.3"; + + src = fetchFromGitHub { + owner = "tboox"; + repo = pname; + rev = "v${version}"; + hash = "sha256-6SqMvwxKSiJO7Z33xx7cJoECu5AJ1gWF8ZsiERWx8DU="; + }; + + configureFlags = [ + "--hash=y" + "--charset=y" + "--float=y" + "--demo=n" + ]; + + postInstall = '' + mkdir -p $out/lib/pkgconfig + substituteAll ${./libtbox.pc.in} $out/lib/pkgconfig/libtbox.pc + ''; + + meta = with lib; { + description = "A glib-like multi-platform c library"; + homepage = "https://docs.tboox.org"; + license = licenses.asl20; + platforms = platforms.linux; + maintainers = with maintainers; [ rewine ]; + }; +} + diff --git a/pkgs/development/libraries/tbox/libtbox.pc.in b/pkgs/development/libraries/tbox/libtbox.pc.in new file mode 100644 index 0000000000000..19907b72c07c1 --- /dev/null +++ b/pkgs/development/libraries/tbox/libtbox.pc.in @@ -0,0 +1,10 @@ +prefix=@out@ +exec_prefix=${prefix} +libdir=@out@/lib +includedir=@out@/include + +Name: tbox +Description: A glib-like multi-platform c library +Version: @version@ +Libs: -L${libdir} -ltbox +Cflags: -I${includedir} diff --git a/pkgs/development/libraries/tcl-fcgi/default.nix b/pkgs/development/libraries/tcl-fcgi/default.nix new file mode 100644 index 0000000000000..5451c5186a4ee --- /dev/null +++ b/pkgs/development/libraries/tcl-fcgi/default.nix @@ -0,0 +1,31 @@ +{ lib, fetchFromGitHub, tcl, tclx }: + +tcl.mkTclDerivation rec { + pname = "tcl-fcgi"; + version = "0.5.0"; + + src = fetchFromGitHub { + owner = "mpcjanssen"; + repo = "tcl-fcgi"; + rev = "62452dbf3177ba9458fbb42457834ca77bdf5a82"; + sha256 = "sha256-RLuV4ARmGWCJTmhs7DbMWENQGj3d5ZXWb821WrgG0qA="; + }; + + buildInputs = [ + tclx + ]; + + unpackPhase = '' + mkdir -p $out/lib/tcl-fcgi + cp -r $src/tcl-src/* $out/lib/tcl-fcgi/ + ''; + + meta = with lib; { + homepage = "https://github.com/mpcjanssen/tcl-fcgi"; + description = "Tcl interface for the FastCGI protocol"; + license = licenses.bsd2; + platforms = tclx.meta.platforms; + maintainers = with maintainers; [ nat-418 ]; + }; +} + diff --git a/pkgs/development/libraries/tclx/default.nix b/pkgs/development/libraries/tclx/default.nix index a31777fed9df2..1e6098aa637ae 100644 --- a/pkgs/development/libraries/tclx/default.nix +++ b/pkgs/development/libraries/tclx/default.nix @@ -5,13 +5,13 @@ tcl.mkTclDerivation rec { pname = "tclx"; - version = "8.6.1"; + version = "8.6.2"; src = fetchFromGitHub { owner = "flightaware"; repo = "tclx"; rev = "v${version}"; - hash = "sha256-HdbuU0IR8q/0g2fIs1xtug4oox/D24C8E2VbEJC5B1A="; + hash = "sha256-ZYJcaVBM5DQWBFYAcW6fx+ENMWJwHzTOUKYPkLsd6o8="; }; # required in order for tclx to properly detect tclx.tcl at runtime diff --git a/pkgs/development/libraries/tk/8.6.nix b/pkgs/development/libraries/tk/8.6.nix index 3e3d8ad54011d..fbf4560517547 100644 --- a/pkgs/development/libraries/tk/8.6.nix +++ b/pkgs/development/libraries/tk/8.6.nix @@ -14,4 +14,8 @@ callPackage ./generic.nix (args // { sha256 = "sha256-LmX6BpojNlRAo8VsVWuGc7XjKig4ANjZslfj9YTOBnU="; }; + patches = [ + ./tk-8_6_13-find-library.patch + ]; + }) diff --git a/pkgs/development/libraries/tk/tk-8_6_13-find-library.patch b/pkgs/development/libraries/tk/tk-8_6_13-find-library.patch new file mode 100644 index 0000000000000..a055ade80cc07 --- /dev/null +++ b/pkgs/development/libraries/tk/tk-8_6_13-find-library.patch @@ -0,0 +1,25 @@ +diff --git a/generic/tkWindow.c b/generic/tkWindow.c +index fa25553..ad45598 100644 +--- a/generic/tkWindow.c ++++ b/generic/tkWindow.c +@@ -1045,6 +1045,7 @@ TkCreateMainWindow( + + Tcl_SetVar2(interp, "tk_patchLevel", NULL, TK_PATCH_LEVEL, TCL_GLOBAL_ONLY); + Tcl_SetVar2(interp, "tk_version", NULL, TK_VERSION, TCL_GLOBAL_ONLY); ++ Tcl_SetVar2(interp, "tk_library", NULL, TK_LIBRARY, TCL_GLOBAL_ONLY); + + tsdPtr->numMainWindows++; + return tkwin; +diff --git a/unix/Makefile.in b/unix/Makefile.in +index e98070e..f417753 100644 +--- a/unix/Makefile.in ++++ b/unix/Makefile.in +@@ -1033,7 +1033,7 @@ tkVisual.o: $(GENERIC_DIR)/tkVisual.c + $(CC) -c $(CC_SWITCHES) $(GENERIC_DIR)/tkVisual.c + + tkWindow.o: $(GENERIC_DIR)/tkWindow.c tkUuid.h +- $(CC) -c $(CC_SWITCHES) -I. $(GENERIC_DIR)/tkWindow.c ++ $(CC) -c $(CC_SWITCHES) -I. -DTK_LIBRARY=\"${TK_LIBRARY}\" $(GENERIC_DIR)/tkWindow.c + + tkButton.o: $(GENERIC_DIR)/tkButton.c + $(CC) -c $(CC_SWITCHES) $(GENERIC_DIR)/tkButton.c diff --git a/pkgs/development/libraries/tracker/default.nix b/pkgs/development/libraries/tracker/default.nix index 4ba70506b718e..1df7553e6c69e 100644 --- a/pkgs/development/libraries/tracker/default.nix +++ b/pkgs/development/libraries/tracker/default.nix @@ -1,6 +1,7 @@ { stdenv , lib , fetchurl +, fetchpatch , gettext , meson , ninja @@ -40,6 +41,16 @@ stdenv.mkDerivation rec { sha256 = "+XLVCse6/czxE7HrmdyuNUBGhameVb/vFvOsg7Tel00="; }; + patches = [ + # Backport sqlite-3.42.0 compatibility: + # https://gitlab.gnome.org/GNOME/tracker/-/merge_requests/600 + (fetchpatch { + name = "sqlite-3.42.0.patch"; + url = "https://gitlab.gnome.org/GNOME/tracker/-/commit/4cbbd1773a7367492fa3b3e3804839654e18a12a.patch"; + hash = "sha256-w5D9I0P1DdyILhpjslh6ifojmlUiBoeFnxHPIr0rO3s="; + }) + ]; + strictDeps = true; depsBuildBuild = [ diff --git a/pkgs/development/libraries/wavpack/default.nix b/pkgs/development/libraries/wavpack/default.nix index 01b29e012dfc1..bb0a43d24c0f2 100644 --- a/pkgs/development/libraries/wavpack/default.nix +++ b/pkgs/development/libraries/wavpack/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "wavpack"; - version = "5.5.0"; + version = "5.6.0"; enableParallelBuilding = true; @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { owner = "dbry"; repo = "WavPack"; rev = version; - hash = "sha256-4QDtLywu0PT+YsMV26M74bL2P7p4s1tk8ZBQtQcubaU="; + hash = "sha256-fWAGE87JTNTnYoxrkMf3I8C53kZrQiiBy3Zyg0cw8Og="; }; outputs = [ "out" "dev" "doc" "man" ]; diff --git a/pkgs/development/libraries/webkitgtk/default.nix b/pkgs/development/libraries/webkitgtk/default.nix index 2d6948d2ada05..5407a74ee2ba2 100644 --- a/pkgs/development/libraries/webkitgtk/default.nix +++ b/pkgs/development/libraries/webkitgtk/default.nix @@ -71,7 +71,7 @@ stdenv.mkDerivation (finalAttrs: { pname = "webkitgtk"; - version = "2.40.1"; + version = "2.40.2"; name = "${finalAttrs.pname}-${finalAttrs.version}+abi=${if lib.versionAtLeast gtk3.version "4.0" then "6.0" else "4.${if lib.versions.major libsoup.version == "2" then "0" else "1"}"}"; outputs = [ "out" "dev" "devdoc" ]; @@ -82,7 +82,7 @@ stdenv.mkDerivation (finalAttrs: { src = fetchurl { url = "https://webkitgtk.org/releases/webkitgtk-${finalAttrs.version}.tar.xz"; - hash = "sha256-ZOUmmE+M0hYe8DrpSa+ZwAL/Mz1hXmOGtGAWSjwbfvY="; + hash = "sha256-lomIcNmU2kBu56YygW3N6aO7OV7l80T8s/O4zIp34AA="; }; patches = lib.optionals stdenv.isLinux [ @@ -173,13 +173,11 @@ stdenv.mkDerivation (finalAttrs: { install -Dm444 "${lib.getDev apple_sdk.sdk}"/include/libproc.h "$out"/include/libproc.h '' ) ++ lib.optionals stdenv.isLinux [ - bubblewrap libseccomp libmanette wayland libwpe libwpe-fdo - xdg-dbus-proxy ] ++ lib.optionals systemdSupport [ systemd ] ++ lib.optionals enableGeoLocation [ @@ -204,6 +202,11 @@ stdenv.mkDerivation (finalAttrs: { "-DUSE_LIBHYPHEN=OFF" "-DUSE_SOUP2=${cmakeBool (lib.versions.major libsoup.version == "2")}" "-DUSE_LIBSECRET=${cmakeBool withLibsecret}" + ] ++ lib.optionals stdenv.isLinux [ + # Have to be explicitly specified when cross. + # https://github.com/WebKit/WebKit/commit/a84036c6d1d66d723f217a4c29eee76f2039a353 + "-DBWRAP_EXECUTABLE=${lib.getExe bubblewrap}" + "-DDBUS_PROXY_EXECUTABLE=${lib.getExe xdg-dbus-proxy}" ] ++ lib.optionals stdenv.isDarwin [ "-DENABLE_GAMEPAD=OFF" "-DENABLE_GTKDOC=OFF" diff --git a/pkgs/development/libraries/webrtc-audio-processing/0.3.nix b/pkgs/development/libraries/webrtc-audio-processing/0.3.nix index a16ddebbefe40..30e2a343e2d07 100644 --- a/pkgs/development/libraries/webrtc-audio-processing/0.3.nix +++ b/pkgs/development/libraries/webrtc-audio-processing/0.3.nix @@ -9,6 +9,8 @@ stdenv.mkDerivation rec { sha256 = "1gsx7k77blfy171b6g3m0k0s0072v6jcawhmx1kjs9w5zlwdkzd0"; }; + outputs = [ "out" "dev" ]; + patches = [ ./enable-riscv.patch ./enable-powerpc.patch diff --git a/pkgs/development/libraries/wxsqlite3/default.nix b/pkgs/development/libraries/wxsqlite3/default.nix index 10b5558589a6e..5dc9829b1a3ad 100644 --- a/pkgs/development/libraries/wxsqlite3/default.nix +++ b/pkgs/development/libraries/wxsqlite3/default.nix @@ -12,13 +12,13 @@ stdenv.mkDerivation rec { pname = "wxsqlite3"; - version = "4.9.3"; + version = "4.9.4"; src = fetchFromGitHub { owner = "utelle"; repo = "wxsqlite3"; rev = "v${version}"; - hash = "sha256-HdsPCdZF1wMTGYFaXzq+f4bUFjgCAklsKhhdyMKaxp8="; + hash = "sha256-aM79DI/Kj1QEIJ1HMttlfqK/WZER9RJhQbrnbPto57U="; }; nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/development/libraries/xmake-core-sv/default.nix b/pkgs/development/libraries/xmake-core-sv/default.nix new file mode 100644 index 0000000000000..83442a8d48a91 --- /dev/null +++ b/pkgs/development/libraries/xmake-core-sv/default.nix @@ -0,0 +1,30 @@ +{ lib +, stdenv +, fetchFromGitHub +, autoreconfHook +}: + +stdenv.mkDerivation rec { + pname = "xmake-core-sv"; + version = "1.1"; + + src = fetchFromGitHub { + owner = "xmake-io"; + repo = pname; + rev = "v${version}"; + hash = "sha256-icvGQi6FNSZXNGs2oLiUKu6rrVsWcXh1r91kycGjnwY="; + }; + + nativeBuildInputs = [ + autoreconfHook + ]; + + meta = with lib; { + description = "Public domain cross-platform semantic versioning in c99"; + homepage = "https://github.com/xmake-io/xmake-core-sv"; + license = licenses.unlicense; + platforms = platforms.linux; + maintainers = with maintainers; [ rewine ]; + }; +} + diff --git a/pkgs/development/libraries/zchunk/default.nix b/pkgs/development/libraries/zchunk/default.nix index 212196bf3032f..4af4ba65a395f 100644 --- a/pkgs/development/libraries/zchunk/default.nix +++ b/pkgs/development/libraries/zchunk/default.nix @@ -11,13 +11,13 @@ stdenv.mkDerivation rec { pname = "zchunk"; - version = "1.3.0"; + version = "1.3.1"; src = fetchFromGitHub { owner = "zchunk"; repo = pname; rev = version; - hash = "sha256-9T1u2Qvy2gRUQzgAp81x+tSbHXuEoxhYhS1T9XntvKk="; + hash = "sha256-mZc8DC26c4hZzHsozhBmuvaIjL3ifQ7GYYGDEsBBPKc="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/zeromq/4.x.nix b/pkgs/development/libraries/zeromq/4.x.nix index b37dfbdd70773..53b1f2f7431a7 100644 --- a/pkgs/development/libraries/zeromq/4.x.nix +++ b/pkgs/development/libraries/zeromq/4.x.nix @@ -1,5 +1,13 @@ -{ lib, stdenv, fetchFromGitHub, cmake, asciidoc, pkg-config, libsodium -, enableDrafts ? false }: +{ lib +, stdenv +, fetchFromGitHub +, fetchpatch +, cmake +, asciidoc +, pkg-config +, libsodium +, enableDrafts ? false +}: stdenv.mkDerivation rec { pname = "zeromq"; @@ -12,6 +20,16 @@ stdenv.mkDerivation rec { sha256 = "sha256-epOEyHOswUGVwzz0FLxhow/zISmZHxsIgmpOV8C8bQM="; }; + patches = [ + # Backport gcc-13 fix: + # https://github.com/zeromq/libzmq/pull/4480 + (fetchpatch { + name = "gcc-13.patch"; + url = "https://github.com/zeromq/libzmq/commit/438d5d88392baffa6c2c5e0737d9de19d6686f0d.patch"; + hash = "sha256-tSTYSrQzgnfbY/70QhPdOnpEXX05VAYwVYuW8P1LWf0="; + }) + ]; + nativeBuildInputs = [ cmake asciidoc pkg-config ]; buildInputs = [ libsodium ]; diff --git a/pkgs/development/libraries/zimg/default.nix b/pkgs/development/libraries/zimg/default.nix index f7b0ab31d83cf..60a20bf8a5dc0 100644 --- a/pkgs/development/libraries/zimg/default.nix +++ b/pkgs/development/libraries/zimg/default.nix @@ -11,6 +11,8 @@ stdenv.mkDerivation rec { sha256 = "1069x49l7kh1mqcq1h3f0m5j0h832jp5x230bh4c613ymgg5kn00"; }; + outputs = [ "out" "dev" "doc" ]; + nativeBuildInputs = [ autoreconfHook ]; enableParallelBuilding = true; diff --git a/pkgs/development/misc/resholve/test.nix b/pkgs/development/misc/resholve/test.nix index 9096a9249a4d2..8f9da36c9de47 100644 --- a/pkgs/development/misc/resholve/test.nix +++ b/pkgs/development/misc/resholve/test.nix @@ -20,7 +20,7 @@ , runDemo ? false , binlore , sqlite -, util-linux +, unixtools , gawk , rlwrap , gnutar @@ -29,7 +29,7 @@ let default_packages = [ bash file findutils gettext ]; - parsed_packages = [ coreutils sqlite util-linux gnused gawk findutils rlwrap gnutar bc ]; + parsed_packages = [ coreutils sqlite unixtools.script gnused gawk findutils rlwrap gnutar bc ]; in rec { module1 = resholve.mkDerivation { diff --git a/pkgs/development/mobile/ios-webkit-debug-proxy/0001-Don-t-compile-examples.patch b/pkgs/development/mobile/ios-webkit-debug-proxy/0001-Don-t-compile-examples.patch new file mode 100644 index 0000000000000..2ab6554d9ac49 --- /dev/null +++ b/pkgs/development/mobile/ios-webkit-debug-proxy/0001-Don-t-compile-examples.patch @@ -0,0 +1,23 @@ +diff --git a/Makefile.am b/Makefile.am +index 52dc7a8..407c056 100644 +--- a/Makefile.am ++++ b/Makefile.am +@@ -2,4 +2,4 @@ + # Copyright 2012 Google Inc. wrightt@google.com + + AUTOMAKE_OPTIONS = foreign +-SUBDIRS = src include examples ++SUBDIRS = src include +diff --git a/configure.ac b/configure.ac +index ac2a278..a4104b7 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -82,7 +82,7 @@ fi + + AC_CHECK_FUNCS([memmove memset regcomp select socket strcasecmp strncasecmp strchr strdup strndup strrchr strstr strtol strcasestr getline]) + +-AC_CONFIG_FILES([Makefile src/Makefile include/Makefile examples/Makefile]) ++AC_CONFIG_FILES([Makefile src/Makefile include/Makefile]) + + CFLAGS="${CFLAGS} -Wall -Werror" + diff --git a/pkgs/development/mobile/ios-webkit-debug-proxy/default.nix b/pkgs/development/mobile/ios-webkit-debug-proxy/default.nix new file mode 100644 index 0000000000000..b9edbb4cbd4a2 --- /dev/null +++ b/pkgs/development/mobile/ios-webkit-debug-proxy/default.nix @@ -0,0 +1,57 @@ +{ stdenv +, autoconf +, automake +, fetchFromGitHub +, fetchpatch +, lib +, libimobiledevice +, libusb1 +, libplist +, libtool +, openssl +, pkg-config +}: + +stdenv.mkDerivation rec { + pname = "ios-webkit-debug-proxy"; + version = "1.9.0"; + + src = fetchFromGitHub { + owner = "google"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-cZ/p/aWET/BXKDrD+qgR+rfTISd+4jPNQFuV8klSLUo="; + }; + + patches = [ + # OpenSSL 3.0 compatibility + (fetchpatch { + url = "https://github.com/google/ios-webkit-debug-proxy/commit/5ba30a2a67f39d25025cadf37c0eafb2e2d2d0a8.patch"; + sha256 = "sha256-2b9BjG9wkqO+ZfoBYYJvD2Db5Kr0F/MxKMTRsI0ea3s="; + }) + # Examples compilation breaks with --disable-static, see https://github.com/google/ios-webkit-debug-proxy/issues/399 + ./0001-Don-t-compile-examples.patch + ]; + + outputs = [ "out" "dev" ]; + + nativeBuildInputs = [ autoconf automake libtool pkg-config ]; + buildInputs = [ libimobiledevice libusb1 libplist openssl ]; + + preConfigure = '' + NOCONFIGURE=1 ./autogen.sh + ''; + enableParallelBuilding = true; + + meta = with lib; { + description = "A DevTools proxy (Chrome Remote Debugging Protocol) for iOS devices (Safari Remote Web Inspector)."; + longDescription = '' + The ios_webkit_debug_proxy (aka iwdp) proxies requests from usbmuxd + daemon over a websocket connection, allowing developers to send commands + to MobileSafari and UIWebViews on real and simulated iOS devices. + ''; + homepage = "https://github.com/google/ios-webkit-debug-proxy"; + license = licenses.bsd3; + maintainers = [ maintainers.abustany ]; + }; +} diff --git a/pkgs/development/node-packages/aliases.nix b/pkgs/development/node-packages/aliases.nix index 62f0d1aa672a9..7e13ee15364e2 100644 --- a/pkgs/development/node-packages/aliases.nix +++ b/pkgs/development/node-packages/aliases.nix @@ -42,6 +42,7 @@ mapAliases { "@githubnext/github-copilot-cli" = pkgs.github-copilot-cli; # Added 2023-05-02 "@google/clasp" = pkgs.google-clasp; # Added 2023-05-07 "@nestjs/cli" = pkgs.nest-cli; # Added 2023-05-06 + eslint_d = pkgs.eslint_d; # Added 2023-05-26 manta = pkgs.node-manta; # Added 2023-05-06 thelounge = pkgs.thelounge; # Added 2023-05-22 triton = pkgs.triton; # Added 2023-05-06 diff --git a/pkgs/development/node-packages/main-programs.nix b/pkgs/development/node-packages/main-programs.nix index 762a445055537..b016d08e3cd5b 100644 --- a/pkgs/development/node-packages/main-programs.nix +++ b/pkgs/development/node-packages/main-programs.nix @@ -16,6 +16,7 @@ "@angular/cli" = "ng"; "@antora/cli" = "antora"; "@astrojs/language-server" = "astro-ls"; + "@babel/cli" = "babel"; "@bitwarden/cli" = "bw"; "@commitlint/cli" = "commitlint"; "@forge/cli" = "forge"; diff --git a/pkgs/development/node-packages/node-packages.json b/pkgs/development/node-packages/node-packages.json index 2ef2d3e41afe1..c8aede0935b95 100644 --- a/pkgs/development/node-packages/node-packages.json +++ b/pkgs/development/node-packages/node-packages.json @@ -2,6 +2,7 @@ "@angular/cli" , "@antfu/ni" , "@astrojs/language-server" +, "@babel/cli" , "@bitwarden/cli" , "@commitlint/cli" , "@commitlint/config-conventional" @@ -132,7 +133,6 @@ , "emojione" , "escape-string-regexp" , "eslint" -, "eslint_d" , "esy" , "expo-cli" , "fast-cli" diff --git a/pkgs/development/node-packages/node-packages.nix b/pkgs/development/node-packages/node-packages.nix index a5d07ae489cbf..3298f936ff403 100644 --- a/pkgs/development/node-packages/node-packages.nix +++ b/pkgs/development/node-packages/node-packages.nix @@ -166,31 +166,31 @@ let sha512 = "lFMjJTrFL3j7L9yBxwYfCq2k6qqwHyzuUl/XBnif78PWTJYyL/dfowQHWE3sp6U6ZzqWiiIZnpTMO96zhkjwtg=="; }; }; - "@angular-devkit/architect-0.1600.3" = { + "@angular-devkit/architect-0.1600.4" = { name = "_at_angular-devkit_slash_architect"; packageName = "@angular-devkit/architect"; - version = "0.1600.3"; + version = "0.1600.4"; src = fetchurl { - url = "https://registry.npmjs.org/@angular-devkit/architect/-/architect-0.1600.3.tgz"; - sha512 = "XEncYhrQDwHjDBWqSv9oeufzsYQNHVP+ftD0LWtqL4TvOwsJ5ShWEqkjXIfG9FiaIUtmd6X2BBXutbib/yALxA=="; + url = "https://registry.npmjs.org/@angular-devkit/architect/-/architect-0.1600.4.tgz"; + sha512 = "wW35EURt4QQhOTuQoMQ91Y9Jt7Fm4fs7KCUIQpkGisVu3P79TRgWyXUKv5IBXzLMGC3aJDv25zbLRchP+4Y7uA=="; }; }; - "@angular-devkit/core-16.0.3" = { + "@angular-devkit/core-16.0.4" = { name = "_at_angular-devkit_slash_core"; packageName = "@angular-devkit/core"; - version = "16.0.3"; + version = "16.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/@angular-devkit/core/-/core-16.0.3.tgz"; - sha512 = "3Epwyl0jlLP4X1hT8rl6fF66aGX6a/OvERvDFyaSI5fgMmiO/mN44JXeew9G6OE8XFQoV/cofrroYQ+Ugy+nJw=="; + url = "https://registry.npmjs.org/@angular-devkit/core/-/core-16.0.4.tgz"; + sha512 = "RK8+W+BVQcD2RHyQcy4iKSIFO1BexVUU2htu3+A9SY7VN/szoMgHIP/sx7Pj+LIJfDrvyve57aIOv0KPWk3WOg=="; }; }; - "@angular-devkit/schematics-16.0.3" = { + "@angular-devkit/schematics-16.0.4" = { name = "_at_angular-devkit_slash_schematics"; packageName = "@angular-devkit/schematics"; - version = "16.0.3"; + version = "16.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/@angular-devkit/schematics/-/schematics-16.0.3.tgz"; - sha512 = "mWvEKtuWi8GjplhdogJ48e8/19Fa6JjyFvRJulZNFUpxfAUUTOAJ1e5FuxbK9mwD2f2NGOJf0/6wIl9ldj4jUg=="; + url = "https://registry.npmjs.org/@angular-devkit/schematics/-/schematics-16.0.4.tgz"; + sha512 = "ASr9bGRuTTAAgHsr/ltBBl4CTyZETmuzS/boVMNDVLvjDDFr0aY/F/FW/QRFbJsxgxM2VAJn7NpY64Rl9fQz/g=="; }; }; "@apidevtools/json-schema-ref-parser-9.0.6" = { @@ -382,13 +382,13 @@ let sha512 = "xhlTqH0m31mnsG0tIP4ETgfSB6gXDaYYsUWTrlUV93fFQPI9dd8hE0Ot6MHLCtqgB32hwJAC3YZMWlXZw7AleA=="; }; }; - "@astrojs/compiler-1.4.2" = { + "@astrojs/compiler-1.5.0" = { name = "_at_astrojs_slash_compiler"; packageName = "@astrojs/compiler"; - version = "1.4.2"; + version = "1.5.0"; src = fetchurl { - url = "https://registry.npmjs.org/@astrojs/compiler/-/compiler-1.4.2.tgz"; - sha512 = "xoRp7JpiMZPK/beUcZEM5kM44Z/h20wwwQcl54duPqQMyySG9vZ5xMM6dYiQmn7b3XzpZs0cT6TRDoJJ5gwHAQ=="; + url = "https://registry.npmjs.org/@astrojs/compiler/-/compiler-1.5.0.tgz"; + sha512 = "k04X/7nlMklU0HQUScxbCTf5n8/Vr+0U0bawb9QWulWxd6qJf3FmBrNATgTYiltjB4pc5HBqmmttAfFi7m4lLg=="; }; }; "@asyncapi/specs-4.3.1" = { @@ -409,6 +409,15 @@ let sha512 = "TvE1r2CUueyXOuHdEigYjIZVesInd9KN+K/TFFNfkkxRThiNxO6i4ZqqAVMoEjAamZZ1AA8WXJkjCz7YShHPQA=="; }; }; + "@aws-crypto/crc32-3.0.0" = { + name = "_at_aws-crypto_slash_crc32"; + packageName = "@aws-crypto/crc32"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@aws-crypto/crc32/-/crc32-3.0.0.tgz"; + sha512 = "IzSgsrxUcsrejQbPVilIKy16kAT52EwB6zSaI+M3xxIhKh5+aldEyvI+z6erM7TCLB2BJsFrtHjp6/4/sr+3dA=="; + }; + }; "@aws-crypto/crc32c-2.0.0" = { name = "_at_aws-crypto_slash_crc32c"; packageName = "@aws-crypto/crc32c"; @@ -472,6 +481,15 @@ let sha512 = "Lgu5v/0e/BcrZ5m/IWqzPUf3UYFTy/PpeED+uc9SWUR1iZQL8XXbGQg10UfllwwBryO3hFF5dizK+78aoXC1eA=="; }; }; + "@aws-crypto/util-3.0.0" = { + name = "_at_aws-crypto_slash_util"; + packageName = "@aws-crypto/util"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@aws-crypto/util/-/util-3.0.0.tgz"; + sha512 = "2OJlpeJpCR48CC8r+uKVChzs9Iungj9wkZrl8Z041DWEWvyIHILYKCPNzJghKsivj+S3mLo6BVc7mBNzdxA46w=="; + }; + }; "@aws-sdk/abort-controller-3.226.0" = { name = "_at_aws-sdk_slash_abort-controller"; packageName = "@aws-sdk/abort-controller"; @@ -616,6 +634,15 @@ let sha512 = "6uPtR8vSwz3fqoZk9hrb6qBYdp3PJ22+JxV5Wimdesvow4kJXSgDQXIxEkxbv6SxB9tNRB4uJHD84RetHEi15Q=="; }; }; + "@aws-sdk/eventstream-codec-3.342.0" = { + name = "_at_aws-sdk_slash_eventstream-codec"; + packageName = "@aws-sdk/eventstream-codec"; + version = "3.342.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@aws-sdk/eventstream-codec/-/eventstream-codec-3.342.0.tgz"; + sha512 = "IwtvSuplioMyiu/pQgpazKkGWDM5M5BOx85zmsB0uNxt6rmje8+WqPmGmuPdmJv4bLC5dJPLovcCp/fuH8XWhA=="; + }; + }; "@aws-sdk/eventstream-serde-browser-3.226.0" = { name = "_at_aws-sdk_slash_eventstream-serde-browser"; packageName = "@aws-sdk/eventstream-serde-browser"; @@ -931,13 +958,13 @@ let sha512 = "FzB+VrQ47KAFxiPt2YXrKZ8AOLZQqGTLCKHzx4bjxGmwgsjV8yIbtJiJhZLMcUQV4LtGeIY9ixIqQhGvnZHE4A=="; }; }; - "@aws-sdk/querystring-parser-3.341.0" = { + "@aws-sdk/querystring-parser-3.342.0" = { name = "_at_aws-sdk_slash_querystring-parser"; packageName = "@aws-sdk/querystring-parser"; - version = "3.341.0"; + version = "3.342.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/querystring-parser/-/querystring-parser-3.341.0.tgz"; - sha512 = "7O61bRUdo2x73TTeyyriibLpx9tUPO13gBdI9oHpJTZEkOiUYxoxjMdo5s7ofis12MdmzelqIUjPmAvJNtB5wA=="; + url = "https://registry.npmjs.org/@aws-sdk/querystring-parser/-/querystring-parser-3.342.0.tgz"; + sha512 = "6svvr/LZW1EPJaARnOpjf92FIiK25wuO7fRq05gLTcTRAfUMDvub+oDg3Ro9EjJERumrYQrYCem5Qi4X9w8K2g=="; }; }; "@aws-sdk/s3-request-presigner-3.241.0" = { @@ -976,22 +1003,22 @@ let sha512 = "/R5q5agdPd7HJB68XMzpxrNPk158EHUvkFkuRu5Qf3kkkHebEzWEBlWoVpUe6ss4rP9Tqcue6xPuaftEmhjpYw=="; }; }; - "@aws-sdk/signature-v4-3.341.0" = { + "@aws-sdk/signature-v4-3.342.0" = { name = "_at_aws-sdk_slash_signature-v4"; packageName = "@aws-sdk/signature-v4"; - version = "3.341.0"; + version = "3.342.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/signature-v4/-/signature-v4-3.341.0.tgz"; - sha512 = "4nWgDiw68lEFBwrQY1JsKBvcMmcRhClpWzi3iKHwU1PJogId6g4XRU89Zo0QzBQihmFZIKklRSF/150pbNGdcg=="; + url = "https://registry.npmjs.org/@aws-sdk/signature-v4/-/signature-v4-3.342.0.tgz"; + sha512 = "OWrGO2UOa1ENpy0kYd2shK4sklQygWUqvWLx9FotDbjIeUIEfAnqoPq/QqcXVrNyT/UvPi4iIrjHJEO8JCNRmA=="; }; }; - "@aws-sdk/signature-v4-crt-3.341.0" = { + "@aws-sdk/signature-v4-crt-3.342.0" = { name = "_at_aws-sdk_slash_signature-v4-crt"; packageName = "@aws-sdk/signature-v4-crt"; - version = "3.341.0"; + version = "3.342.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/signature-v4-crt/-/signature-v4-crt-3.341.0.tgz"; - sha512 = "DsBX+ePdQHd1KrlVhNxIFNCBLPtp2cE73FAoxWp5hDelH6RlyvIEEiNkO9fL9mRROsSK6jI+kdK1jOFGYec+bw=="; + url = "https://registry.npmjs.org/@aws-sdk/signature-v4-crt/-/signature-v4-crt-3.342.0.tgz"; + sha512 = "8WlcB4eWCWdM3ChdPOIEt4hChjQ2es71ZW7hqli1V54sMH6GByCN4GUaSZrlXh7ySYNIMBp4MfZnPMw7Xp73Ww=="; }; }; "@aws-sdk/signature-v4-multi-region-3.226.0" = { @@ -1030,13 +1057,13 @@ let sha512 = "MmmNHrWeO4man7wpOwrAhXlevqtOV9ZLcH4RhnG5LmRce0RFOApx24HoKENfFCcOyCm5LQBlsXCqi0dZWDWU0A=="; }; }; - "@aws-sdk/types-3.341.0" = { + "@aws-sdk/types-3.342.0" = { name = "_at_aws-sdk_slash_types"; packageName = "@aws-sdk/types"; - version = "3.341.0"; + version = "3.342.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/types/-/types-3.341.0.tgz"; - sha512 = "2KJf64BhJly/Ty35oWKlCElIqUP4kQ0LA+meSrgAmwl7oE0AYuO7V0ar1nsTGlsubYkLRvOuEhMcuNuumaUdoQ=="; + url = "https://registry.npmjs.org/@aws-sdk/types/-/types-3.342.0.tgz"; + sha512 = "5uyXVda/AgUpdZNJ9JPHxwyxr08miPiZ/CKSMcRdQVjcNnrdzY9m/iM9LvnQT44sQO+IEEkF2IoZIWvZcq199A=="; }; }; "@aws-sdk/url-parser-3.226.0" = { @@ -1192,13 +1219,13 @@ let sha512 = "B96CQnwX4gRvQdaQkdUtqvDPkrptV5+va6FVeJOocU/DbSYMAScLxtR3peMS8cnlOT6nL1Eoa42OI9AfZz1VwQ=="; }; }; - "@aws-sdk/util-middleware-3.341.0" = { + "@aws-sdk/util-middleware-3.342.0" = { name = "_at_aws-sdk_slash_util-middleware"; packageName = "@aws-sdk/util-middleware"; - version = "3.341.0"; + version = "3.342.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/util-middleware/-/util-middleware-3.341.0.tgz"; - sha512 = "JsuZGZw9pMYMHzaJW31Y3Zl1Dh/R2PNVxnlQPsPy37RhHoSLPZ6wR9G828Y1ZY2thBpR+DU3D/VfNJOxBmWGkw=="; + url = "https://registry.npmjs.org/@aws-sdk/util-middleware/-/util-middleware-3.342.0.tgz"; + sha512 = "P2LYyMP4JUFZBy9DcMvCDxWU34mlShCyrqBZ1ouuGW7UMgRb1PTEvpLAVndIWn9H+1KGDFjMqOWp1FZHr4YZOA=="; }; }; "@aws-sdk/util-retry-3.229.0" = { @@ -1345,13 +1372,13 @@ let sha512 = "HFrcTgmuSuukRf/EdPmqBrc5l6Q5Uu+2TbuhaKbgaCpP2TfAeiNaQPAadxO+CYBRHGUzIDteMAjFspFLDLnKVQ=="; }; }; - "@azure/core-client-1.7.2" = { + "@azure/core-client-1.7.3" = { name = "_at_azure_slash_core-client"; packageName = "@azure/core-client"; - version = "1.7.2"; + version = "1.7.3"; src = fetchurl { - url = "https://registry.npmjs.org/@azure/core-client/-/core-client-1.7.2.tgz"; - sha512 = 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+2020,6 @@ let sha512 = "tycmZxkGfZaxhMRbXlPXuVFpdWlXpir2W4AMhSJgRKzk/eDlIXOhb2LHWoLpDF7TEHylV5zNhykX6KAgHJmTNw=="; }; }; - "@babel/plugin-syntax-bigint-7.8.3" = { - name = "_at_babel_slash_plugin-syntax-bigint"; - packageName = "@babel/plugin-syntax-bigint"; - version = "7.8.3"; - src = fetchurl { - url = "https://registry.npmjs.org/@babel/plugin-syntax-bigint/-/plugin-syntax-bigint-7.8.3.tgz"; - sha512 = "wnTnFlG+YxQm3vDxpGE57Pj0srRU4sHE/mDkt1qv2YJJSeUAec2ma4WLUnUPeKjyrfntVwe/N6dCXpU+zL3Npg=="; - }; - }; "@babel/plugin-syntax-class-properties-7.12.13" = { name = "_at_babel_slash_plugin-syntax-class-properties"; packageName = "@babel/plugin-syntax-class-properties"; @@ -2632,13 +2650,13 @@ let sha512 = "yECRVxRu25Nsf6IY5v5XrXhcW9ZHomUQiq30VO8H7r3JYPcBJDTcxZmT+6v1O3QKKrDp1Wp40LinGbcd+jlp9A=="; }; }; - "@babel/plugin-transform-runtime-7.22.2" = { + "@babel/plugin-transform-runtime-7.22.4" = { name = "_at_babel_slash_plugin-transform-runtime"; packageName = "@babel/plugin-transform-runtime"; - version = "7.22.2"; + version = "7.22.4"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/plugin-transform-runtime/-/plugin-transform-runtime-7.22.2.tgz"; - sha512 = "ewgWBw1pAoqFg9crO6yhZAQoKWN/iNEGqAmuYegZp+xEpvMHGyLxt0SgPZ9bWG6jx4eff6jQ4JILt5zwj/EoTg=="; + url = "https://registry.npmjs.org/@babel/plugin-transform-runtime/-/plugin-transform-runtime-7.22.4.tgz"; + sha512 = "Urkiz1m4zqiRo17klj+l3nXgiRTFQng91Bc1eiLF7BMQu1e7wE5Gcq9xSv062IF068NHjcutSbIMev60gXxAvA=="; }; }; "@babel/plugin-transform-shorthand-properties-7.18.6" = { @@ -2749,13 +2767,13 @@ let sha512 = "Fnx1wWaWv2w2rl+VHxA9si//Da40941IQ29fKiRejVR7oN1FxSEL8+SyAX/2oKIye2gPvY/GBbJVEKQ/oi43zQ=="; }; }; - "@babel/preset-env-7.22.2" = { + "@babel/preset-env-7.22.4" = { name = "_at_babel_slash_preset-env"; packageName = "@babel/preset-env"; - version = "7.22.2"; + version = "7.22.4"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/preset-env/-/preset-env-7.22.2.tgz"; - 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"5D2qVpZrgpjtqU4eNOcWGp1gnUCgjfM+vKGE2y03kKN6z5EBhtx0qdRFbg8QuNNj8wXNoX93KJoYb+NqoxswmQ=="; }; }; - "@forge/api-2.15.3" = { + "@forge/api-2.16.0" = { name = "_at_forge_slash_api"; packageName = "@forge/api"; - version = "2.15.3"; + version = "2.16.0"; src = fetchurl { - url = "https://registry.npmjs.org/@forge/api/-/api-2.15.3.tgz"; - sha512 = "ePWWVokOTT4DBjITu0bJB7I94aYTdZ+ud2drR4Jed52F5SQmARACpOgKHIr83o+IolDHbpKCXi+2SC7EV1zjkA=="; + url = "https://registry.npmjs.org/@forge/api/-/api-2.16.0.tgz"; + sha512 = "0F90d4JVeDaYiPbDKpsxbwqjOazfRJ5pRl3kM1Scf3x54IUVN/dOYZldWG/Q+6jXzBTbebOoKHjh2hgjXooyrQ=="; }; }; "@forge/auth-0.0.1" = { @@ -5917,22 +5890,22 @@ let sha512 = "n2eXc/shPwx0ahD3NNfsmeiFoBCukeglt2htePaNnJBDt0VpC6R4Njsjc/wnL5OMgrGl5/GXzN+mymngXrw9qQ=="; }; }; - "@forge/bundler-4.7.0" = { + "@forge/bundler-4.8.0" = { name = "_at_forge_slash_bundler"; packageName = "@forge/bundler"; - version = "4.7.0"; + version = "4.8.0"; src = fetchurl { - url = "https://registry.npmjs.org/@forge/bundler/-/bundler-4.7.0.tgz"; - sha512 = "dxN+od0GzfCGcRMHbL42jEC5oPBupSKu5x6qBT/n2t1AXjKsbiAmndcaiSlNfwotZWI9km2oCgfWCpaFzryEpQ=="; + url = "https://registry.npmjs.org/@forge/bundler/-/bundler-4.8.0.tgz"; + sha512 = "O8om668vQF54yD03o3Sds6e6hpIKkaEhBai4zOtBiTjD7KU0JC5w8kk3IW2aok2E8VQxZVU+UyUVCcHhreXMnA=="; }; }; - "@forge/cli-shared-3.11.2" = { + "@forge/cli-shared-3.12.0" = { name = "_at_forge_slash_cli-shared"; packageName = "@forge/cli-shared"; - version = "3.11.2"; + version = "3.12.0"; src = fetchurl { - url = "https://registry.npmjs.org/@forge/cli-shared/-/cli-shared-3.11.2.tgz"; - sha512 = "HOkYs6RHY4KVJCOSupc9QKvYEzxfoNvKCsy+0RykKcOl5CyFlVoZRS3yLMwA9ck8m+yfPyWdM9mpImHxMUgdiA=="; + url = "https://registry.npmjs.org/@forge/cli-shared/-/cli-shared-3.12.0.tgz"; + sha512 = "Ajj9HnBApSk2MUQhf3Ax8xA+b1yNtplx8iD7SMaruwzrd/Y+YCL0/13liT7UzF2cdiWsPh+wCh7wpnSZrCZ73w=="; }; }; "@forge/csp-2.1.3" = { @@ -5953,31 +5926,31 @@ let sha512 = "4XUr2LfLN4TGbEcg5GiqFeHwOT+1l7aaW7nwCn0uz2uFahQ+G9Kq0ebFWqsvzd5mCvO9oaSAucJaDeEpriKhmA=="; }; }; - "@forge/lint-3.4.0" = { + "@forge/lint-3.5.0" = { name = "_at_forge_slash_lint"; packageName = "@forge/lint"; - version = "3.4.0"; + version = "3.5.0"; src = fetchurl { - url = "https://registry.npmjs.org/@forge/lint/-/lint-3.4.0.tgz"; - sha512 = "MbtC5aN5YuWFeqt8tq3uws1waQNCJ5jr1S5YGcTtGN4O89DXMnS9euEaYyMg+eNc6BBjzhz767SMsZEBrlgnoA=="; + url = "https://registry.npmjs.org/@forge/lint/-/lint-3.5.0.tgz"; + sha512 = "4uLIqSQd7f72YclSFXmBXk1i+zxZs+LS4AL60dgGwB9H0udJWHr7OQOreHvWdVsVLL2L7e+WK2NBdeR/kCt8VQ=="; }; }; - "@forge/manifest-4.12.0" = { + "@forge/manifest-4.13.0" = { name = "_at_forge_slash_manifest"; packageName = "@forge/manifest"; - version = "4.12.0"; + version = "4.13.0"; src = fetchurl { - url = "https://registry.npmjs.org/@forge/manifest/-/manifest-4.12.0.tgz"; - sha512 = "vtjVADFsNENmnKXInO7h1vpi6n4ixqrdB+zCCXtTc1LDjDAjFh0SaJTCDeZVZ0QJlXQjwoyZasWDBlj2ksfDrA=="; + url = "https://registry.npmjs.org/@forge/manifest/-/manifest-4.13.0.tgz"; + sha512 = "faxkhSPwFy0XPIn2vIEb5uBJOkGGTrm455BLSOyIxlNqOQlArMdGTnrv8t0x0NdyddsGvpuULpjakIYPybX3WA=="; }; }; - "@forge/runtime-4.3.4" = { + "@forge/runtime-4.4.0" = { name = "_at_forge_slash_runtime"; packageName = "@forge/runtime"; - version = "4.3.4"; + version = "4.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/@forge/runtime/-/runtime-4.3.4.tgz"; - sha512 = "cpEsKjA8mFlDMj8ECMvo2nD/MUqN7g6GxM2Z+dCYGOzrNZMLX/rLaLbgUFyqb9GllnBkpCQ/qw4oIs+6WTe5RA=="; + url = "https://registry.npmjs.org/@forge/runtime/-/runtime-4.4.0.tgz"; + sha512 = "Y1Md9KaajJb4jnfwk9BPuuZ0ChAJUlWVNNPAW7SVixqNLV7GSNCnyFz6nJWOy0tgODgz8tWHWktkgmTb807RaA=="; }; }; "@forge/storage-1.5.2" = { @@ -5989,13 +5962,13 @@ let sha512 = "/w9UaTMmvK7DSnGpg+bbLPUF8GDPfrShNPZi7ArgwexihK1j/J7EVvH2j1VEjXGdSH+FuRcqjThfCZoGytFJHw=="; }; }; - "@forge/tunnel-3.4.0" = { + "@forge/tunnel-3.5.0" = { name = "_at_forge_slash_tunnel"; packageName = "@forge/tunnel"; - version = "3.4.0"; + version = "3.5.0"; src = fetchurl { - url = "https://registry.npmjs.org/@forge/tunnel/-/tunnel-3.4.0.tgz"; - sha512 = "PMaVrl8rgmSm5cwJ240WnxTSJpLYGWWNkC9Sc6L93oOb+i5GoshbrbRZVZKkEc6rnKy80Svg4Kk38pcULiU9hw=="; + url = "https://registry.npmjs.org/@forge/tunnel/-/tunnel-3.5.0.tgz"; + sha512 = "MnMgWl0bh6Dveqw2mS5tb0SBJBylSuqoACAr2cWeAUJjJHTX0CXbFH6hC3IEFpKmQNj+fY4GYgFXLlqOsLFoug=="; }; }; "@forge/util-1.2.3" = { @@ -6016,31 +5989,31 @@ let sha512 = "k2Ty1JcVojjJFwrg/ThKi2ujJ7XNLYaFGNB/bWT9wGR+oSMJHMa5w+CUq6p/pVrKeNNgA7pCqEcjSnHVoqJQFw=="; }; }; - "@gitbeaker/core-38.9.0" = { + "@gitbeaker/core-38.10.0" = { name = "_at_gitbeaker_slash_core"; packageName = "@gitbeaker/core"; - version = "38.9.0"; + version = "38.10.0"; src = fetchurl { - url = "https://registry.npmjs.org/@gitbeaker/core/-/core-38.9.0.tgz"; - sha512 = "to//00CiiOi1I9wAOT9jkZQQ5fhY6l6zJdhw/jJJJ1IjUGRCcWn/Yuy/fERWPe1OI6FU3YYICYaUXvrjmEKuaA=="; + url = "https://registry.npmjs.org/@gitbeaker/core/-/core-38.10.0.tgz"; + sha512 = "B5s+Ty/pYo06DZib49CIpn6YUOC0upUPVdKQ1hy33Gkw9GHHlmtilZ0cC8FegdCmstAw9qWgafbBAOX6CYfEeA=="; }; }; - "@gitbeaker/requester-utils-38.9.0" = { + "@gitbeaker/requester-utils-38.10.0" = { name = "_at_gitbeaker_slash_requester-utils"; packageName = "@gitbeaker/requester-utils"; - version = "38.9.0"; + version = "38.10.0"; src = fetchurl { - url = "https://registry.npmjs.org/@gitbeaker/requester-utils/-/requester-utils-38.9.0.tgz"; - sha512 = "3JlHC11yHSjeUZKnwam45wvAvfGSkBEaOzC5XGeAbOWpsD14iKtJxu/zEDjKlX7J/RYsLtkEVyvKRM3LPOlMgw=="; + url = "https://registry.npmjs.org/@gitbeaker/requester-utils/-/requester-utils-38.10.0.tgz"; + sha512 = "OtqB2svrKx9Z0hfdcD2fdj6FSscQEj4B5VpQalJUpPcoIhm2vkezwQ0biJ4h1J8tUTQ0daShFA0p8X4DexntZg=="; }; }; - "@gitbeaker/rest-38.9.0" = { + "@gitbeaker/rest-38.10.0" = { name = "_at_gitbeaker_slash_rest"; packageName = "@gitbeaker/rest"; - version = "38.9.0"; + version = "38.10.0"; src = fetchurl { - url = "https://registry.npmjs.org/@gitbeaker/rest/-/rest-38.9.0.tgz"; - sha512 = "rMh/hgKYPZvUV7kHjf3Ke74Kxc1Wih3dB4Sj5C+BxNxec0AgC8C55mWWS7TJDSuXd8wUiGk4UjhGudbyNYlIDQ=="; + url = "https://registry.npmjs.org/@gitbeaker/rest/-/rest-38.10.0.tgz"; + sha512 = "DpE5vQSOaPXpg5Hqdqyvv5dWX+8TD2sU2b5RDY+uyT/C27wkTbzCBxhBof68bRpbPzW0CiXIlfUMLtfOQIFVlg=="; }; }; "@glideapps/ts-necessities-2.1.2" = { @@ -6592,13 +6565,13 @@ let sha512 = "A0NOZI+Glp3Xgcz6Na7i7o09+/+xm2m0UCU8gdtM2nIv6/cjLmhMZMqehSpTlgbx9omtLmV8LVqOskPEyWnmZQ=="; }; }; - "@humanwhocodes/config-array-0.11.8" = { + "@humanwhocodes/config-array-0.11.10" = { name = "_at_humanwhocodes_slash_config-array"; packageName = "@humanwhocodes/config-array"; - version = "0.11.8"; + version = "0.11.10"; src = fetchurl { - url = "https://registry.npmjs.org/@humanwhocodes/config-array/-/config-array-0.11.8.tgz"; - sha512 = "UybHIJzJnR5Qc/MsD9Kr+RpO2h+/P1GhOwdiLPXK5TWk5sgTdu88bTD9UP+CKbPPh5Rni1u0GjAdYQLemG8g+g=="; + url = "https://registry.npmjs.org/@humanwhocodes/config-array/-/config-array-0.11.10.tgz"; + sha512 = "KVVjQmNUepDVGXNuoRRdmmEjruj0KfiGSbS8LVc12LMsWDQzRXJ0qdhN8L8uUigKpfEHRhlaQFY0ib1tnUbNeQ=="; }; }; "@humanwhocodes/config-array-0.5.0" = { @@ -6844,24 +6817,6 @@ let sha512 = "4z6p4jLGSthc8gQ7wu4nHfGYn/IgCKFr+7hjuf80VdXUs7sm029mZGGDpS8sb29PVZWUBvMMTBCVGFhH2nN4Vw=="; }; }; - "@jest/console-29.5.0" = { - name = "_at_jest_slash_console"; - packageName = "@jest/console"; - version = "29.5.0"; - src = fetchurl { - url = "https://registry.npmjs.org/@jest/console/-/console-29.5.0.tgz"; - sha512 = "NEpkObxPwyw/XxZVLPmAGKE89IQRp4puc6IQRPru6JKd1M3fW9v1xM1AnzIJE65hbCkzQAdnL8P47e9hzhiYLQ=="; - }; - }; - "@jest/core-29.5.0" = { - name = "_at_jest_slash_core"; - packageName = "@jest/core"; - version = "29.5.0"; - src = fetchurl { - url = "https://registry.npmjs.org/@jest/core/-/core-29.5.0.tgz"; - sha512 = "28UzQc7ulUrOQw1IsN/kv1QES3q2kkbl/wGslyhAclqZ/8cMdB5M68BffkIdSJgKBUt50d3hbwJ92XESlE7LiQ=="; - }; - }; "@jest/environment-27.5.1" = { name = "_at_jest_slash_environment"; packageName = "@jest/environment"; @@ -6871,33 +6826,6 @@ let sha512 = "/WQjhPJe3/ghaol/4Bq480JKXV/Rfw8nQdN7f41fM8VDHLcxKXou6QyXAh3EFr9/bVG3x74z1NWDkP87EiY8gA=="; }; }; - "@jest/environment-29.5.0" = { - name = "_at_jest_slash_environment"; - packageName = "@jest/environment"; - version = "29.5.0"; - src = fetchurl { - url = "https://registry.npmjs.org/@jest/environment/-/environment-29.5.0.tgz"; - sha512 = "5FXw2+wD29YU1d4I2htpRX7jYnAyTRjP2CsXQdo9SAM8g3ifxWPSV0HnClSn71xwctr0U3oZIIH+dtbfmnbXVQ=="; - }; - }; - "@jest/expect-29.5.0" = { - name = "_at_jest_slash_expect"; - packageName = "@jest/expect"; - version = "29.5.0"; - src = fetchurl { - url = "https://registry.npmjs.org/@jest/expect/-/expect-29.5.0.tgz"; - sha512 = "PueDR2HGihN3ciUNGr4uelropW7rqUfTiOn+8u0leg/42UhblPxHkfoh0Ruu3I9Y1962P3u2DY4+h7GVTSVU6g=="; - }; - }; - "@jest/expect-utils-29.5.0" = { - name = "_at_jest_slash_expect-utils"; - packageName = 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}; }; - "@rushstack/terminal-0.5.9" = { + "@rushstack/terminal-0.5.12" = { name = "_at_rushstack_slash_terminal"; packageName = "@rushstack/terminal"; - version = "0.5.9"; + version = "0.5.12"; src = fetchurl { - url = "https://registry.npmjs.org/@rushstack/terminal/-/terminal-0.5.9.tgz"; - sha512 = "6zlxXqpQ5j9hWHN62fmooHeJufsqNFax7k0mp0xRhBfbA5DalsGc0hMCQzS6LVX6mBs/YBEGFWu3j1hoNtUflw=="; + url = "https://registry.npmjs.org/@rushstack/terminal/-/terminal-0.5.12.tgz"; + sha512 = "AWrKNYmHwgciPFZyF++bxI5RtsVdn7shy0WWfIZv0G2sNjJI1kuflQtyeCLrvX7wDd0ok0DqDyazn5ITpJKCgw=="; }; }; - "@rushstack/ts-command-line-4.13.2" = { + "@rushstack/ts-command-line-4.13.3" = { name = "_at_rushstack_slash_ts-command-line"; packageName = "@rushstack/ts-command-line"; - version = "4.13.2"; + version = "4.13.3"; src = fetchurl { - url = "https://registry.npmjs.org/@rushstack/ts-command-line/-/ts-command-line-4.13.2.tgz"; - sha512 = 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fetchurl { - url = "https://registry.npmjs.org/@vercel/remix-builder/-/remix-builder-1.8.10.tgz"; - sha512 = "DXOjz/4HUawFojrbK9AQq1sjA2YxGbG8/bTTwSdqdYJZv0QgeK1vkOioxLmQP5qzZ7DQNK+LgSn9oMrX3Bq/lA=="; + url = "https://registry.npmjs.org/@vercel/remix-builder/-/remix-builder-1.8.12.tgz"; + sha512 = "S/C8ZRFmisrxSSWav21hB6R9qt3TiKPEHutBQK0eiQBhu+5M3B2TFT0ThNSM54M4980P2c3NkPdipGU92+cARg=="; }; }; "@vercel/routing-utils-2.2.1" = { @@ -14107,13 +13855,13 @@ let sha512 = "J8I0B7wAn8piGoPhBroBfJWgMEJTMEL/2o8MCoCyWdaE7MRtpXhI10pj8IvcUvAECoGJ+SM1Pm+SvBqtbtZ5FQ=="; }; }; - "@vercel/static-build-1.3.32" = { + "@vercel/static-build-1.3.34" = { name = "_at_vercel_slash_static-build"; packageName = "@vercel/static-build"; - version = "1.3.32"; + version = "1.3.34"; src = fetchurl { - url = "https://registry.npmjs.org/@vercel/static-build/-/static-build-1.3.32.tgz"; - sha512 = "pFZ9dG/Ixm72o8ZGc5G78zUsgHUm5t9V6Ob/RI6KtDz+LP3iIXt7Mh0SLd4hWb553i2vgywe5T1KMPyuy3tOvw=="; + url = 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= "@volar/language-core"; + version = "1.7.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@volar/language-core/-/language-core-1.7.0.tgz"; + sha512 = "ZjuD1bSyPUcWwiCS3wq/BRslMbJ5kU4z4KC3n8epeEFNBo+o2INdASW0wJwG96HSHEbAfO74XFIJ3hQdDGcSAg=="; + }; + }; "@volar/language-server-1.4.1" = { name = "_at_volar_slash_language-server"; packageName = "@volar/language-server"; @@ -14215,6 +13981,15 @@ let sha512 = "UxhiN205o8ZfTnMNhRPCtW+ncrBtqZMd+f08Xf99Je4WB+SYyv3VNnIZEQDXfaTXR6mLUgQ1mDwPsUOLKKGY8A=="; }; }; + "@volar/language-server-1.7.0" = { + name = "_at_volar_slash_language-server"; + packageName = "@volar/language-server"; + version = "1.7.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@volar/language-server/-/language-server-1.7.0.tgz"; + sha512 = "wRojoFbu8rMPIVe3mYb0819VQRTLuX2RrYk3FdU20MwxFtVttwQVGM4S8ayXlw5Af9GVou1SxSpHuECAWdSZTA=="; + }; + }; "@volar/language-service-1.4.1" = { name = "_at_volar_slash_language-service"; packageName = 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= fetchurl { - url = "https://registry.npmjs.org/@zwave-js/serial/-/serial-10.22.3.tgz"; - sha512 = "Lhx6edKIQqUUhnzyJ37rMGvKiFTU1oMceMtWZQ1eF9ZZUNlw8OL/kq7dXidjz9p8ZF1Md4JVHpfkcvL3rasVMA=="; + url = "https://registry.npmjs.org/@zwave-js/serial/-/serial-10.23.0.tgz"; + sha512 = "B6Zm0P6c4/w1856pzC5oR/yBr2cXdMvawCTBaRLlpCmhQBS8eD3lO2b2K3M/3ye00DfOcs/MlGDz3vF2wcm0+g=="; }; }; "@zwave-js/shared-10.22.3" = { @@ -15772,13 +15574,13 @@ let sha512 = "jOH7UJjeDh/QpjRBdHWH7PSL9A7G04T4siVYUwmlY0EehNuQjD3mdpZQeGvHAMUbGTDQ7SHNI1pA1ji6azuyDw=="; }; }; - "@zwave-js/testing-10.22.3" = { + "@zwave-js/testing-10.23.0" = { name = "_at_zwave-js_slash_testing"; packageName = "@zwave-js/testing"; - version = "10.22.3"; + version = "10.23.0"; src = fetchurl { - url = "https://registry.npmjs.org/@zwave-js/testing/-/testing-10.22.3.tgz"; - sha512 = "CgUsJzztJxJUOyThMOOdmO8n5VoG0osam+eK1CjSEEbJdj4NmgYHTtTrOTb9QEEi1XFy/vWjJfkK8tdJDHnOUw=="; + url = 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"clipboard-sys-1.2.0" = { + "clipboard-sys-1.2.1" = { name = "clipboard-sys"; packageName = "clipboard-sys"; - version = "1.2.0"; + version = "1.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/clipboard-sys/-/clipboard-sys-1.2.0.tgz"; - sha512 = "d6Tz6sWl9iPtqMXOuCxcuxLMsOgQ4/253U9mcp6jrp8SDgP1zO+Y1OfMW8AEavQHLrOHF4A2Wbq7B74DEOHgLw=="; + url = "https://registry.npmjs.org/clipboard-sys/-/clipboard-sys-1.2.1.tgz"; + sha512 = "Ln/sq2sspjDrrBzgWHGN1hwo/GCZNpGBU+W1Cr2x31P7FlUTNiot0tbuqS/OXANd3konhUXrk4qPPtXpc4OXNw=="; }; }; "clipboardy-1.2.3" = { @@ -24224,15 +23990,6 @@ let sha512 = "jEovNnrhMuqyCcjfEJA56v0Xq8SkIoPKDyaHahwo3POf4qcSXqMYuwNcOTzp74vTsR9Tn08z4MxWqAhcekogkQ=="; }; }; - "collect-v8-coverage-1.0.1" = { - name = "collect-v8-coverage"; - packageName = "collect-v8-coverage"; - version = "1.0.1"; - src = fetchurl { - url = "https://registry.npmjs.org/collect-v8-coverage/-/collect-v8-coverage-1.0.1.tgz"; - sha512 = 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"detect-port"; + version = "1.5.1"; + src = fetchurl { + url = "https://registry.npmjs.org/detect-port/-/detect-port-1.5.1.tgz"; + sha512 = "aBzdj76lueB6uUst5iAs7+0H/oOjqI5D16XUWxlWMIMROhcM0rfsNVk93zTngq1dDNpoXRr++Sus7ETAExppAQ=="; + }; + }; "detective-4.7.1" = { name = "detective"; packageName = "detective"; @@ -29571,15 +29337,6 @@ let sha512 = "IayShXAgj/QMXgB0IWmKx+rOPuGMhqm5w6jvFxmVenXKIzRqTAAsbBPT3kWQeGANj3jGgvcvv4yK6SxqYmikgw=="; }; }; - "diff-sequences-29.4.3" = { - name = "diff-sequences"; - packageName = "diff-sequences"; - version = "29.4.3"; - src = fetchurl { - url = "https://registry.npmjs.org/diff-sequences/-/diff-sequences-29.4.3.tgz"; - sha512 = "ofrBgwpPhCD85kMKtE9RYFFq6OC1A89oW2vvgWZNCwxrUpRUILopY7lsYyMDSjc8g6U6aiO0Qubg6r4Wgt5ZnA=="; - }; - }; "diff2html-3.4.35" = { name = "diff2html"; packageName = "diff2html"; @@ -29805,13 +29562,13 @@ let sha512 = "QPWcUxbbNTaWaRQrJKUBmCXI6iE8l7f81bCVaZizCIkVg4py/4o2mho+AKlLUsZcCml5ss8MkJ257SFV2BZWCg=="; }; }; - "dockerfile-language-service-0.10.0" = { + "dockerfile-language-service-0.10.2" = { name = "dockerfile-language-service"; packageName = "dockerfile-language-service"; - version = "0.10.0"; + version = "0.10.2"; src = fetchurl { - url = "https://registry.npmjs.org/dockerfile-language-service/-/dockerfile-language-service-0.10.0.tgz"; - sha512 = "1EfLBQViRSzRFFet8co2r3CVudniKPbDB/Q595RUouewUs6UKpe4pdzrTuXIc4TzIGdRXUnBZCZdiN0T9fl+8w=="; + url = "https://registry.npmjs.org/dockerfile-language-service/-/dockerfile-language-service-0.10.2.tgz"; + sha512 = "W561U9gj5Eol55j/hanLRPVarXDq+WXPai1lG5f1fW7/kYElsmWJZoRd585SQBahvC9VlJfFAs6IpzZlvN41Hg=="; }; }; "dockerfile-language-service-0.9.0" = { @@ -30228,6 +29985,15 @@ let sha512 = "7GO6HghkA5fYG9TYnNxi14/7K9f5occMlp3zXAuSxn7CKCxt9xbNWG7yF8hTCSUchlfWSe3uLmlPfigevRItzQ=="; }; }; + "dotenv-16.1.3" = { + name = "dotenv"; + packageName = "dotenv"; + version = "16.1.3"; + src = fetchurl { + url = 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"electron-to-chromium"; packageName = "electron-to-chromium"; - version = "1.4.411"; + version = "1.4.419"; src = fetchurl { - url = "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.4.411.tgz"; - sha512 = "5VXLW4Qw89vM2WTICHua/y8v7fKGDRVa2VPOtBB9IpLvW316B+xd8yD1wTmLPY2ot/00P/qt87xdolj4aG/Lzg=="; + url = "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.4.419.tgz"; + sha512 = "jdie3RiEgygvDTyS2sgjq71B36q2cDSBfPlwzUyuOrfYTNoYWyBxxjGJV/HAu3A2hB0Y+HesvCVkVAFoCKwCSw=="; }; }; "electrum-client-git+https://github.com/janoside/electrum-client" = { @@ -30797,15 +30554,6 @@ let sha512 = "AGvFfs+d0JKCJQ4o01ASQLGPmSCxgfU9RFXvzPvZdjKK8oscynksuJhWrSTSw7j7Ep/sZct5b5ZhYCi8S/t0HQ=="; }; }; - "emittery-0.13.1" = { - name = "emittery"; - packageName = "emittery"; - version = "0.13.1"; - src = fetchurl { - url = "https://registry.npmjs.org/emittery/-/emittery-0.13.1.tgz"; - sha512 = 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"eslint-config-standard-17.1.0" = { name = "eslint-config-standard"; packageName = "eslint-config-standard"; - version = "17.0.0"; + version = "17.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/eslint-config-standard/-/eslint-config-standard-17.0.0.tgz"; - sha512 = "/2ks1GKyqSOkH7JFvXJicu0iMpoojkwB+f5Du/1SC0PtBL+s8v30k9njRZ21pm2drKYm2342jFnGWzttxPmZVg=="; + url = "https://registry.npmjs.org/eslint-config-standard/-/eslint-config-standard-17.1.0.tgz"; + sha512 = "IwHwmaBNtDK4zDHQukFDW5u/aTb8+meQWZvNFWkiGmbWjD6bqyuSSBxxXKkCftCUzc1zwCH2m/baCNDLGmuO5Q=="; }; }; "eslint-config-standard-jsx-11.0.0" = { @@ -33363,15 +33111,6 @@ let sha512 = "A5EmesHW6rfnZ9ysHQjPdJRni0SRar0tjtG5MNtm9n5TUvsYU8oozprtRD4AqHxcZWWlVuAmQo2nWKfN9oyjTw=="; }; }; - "expect-29.5.0" = { - name = "expect"; - packageName = "expect"; - version = "29.5.0"; - src = fetchurl { - url = "https://registry.npmjs.org/expect/-/expect-29.5.0.tgz"; - sha512 = 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"expo-pwa-0.0.125" = { name = "expo-pwa"; packageName = "expo-pwa"; - version = "0.0.124"; + version = "0.0.125"; src = fetchurl { - url = "https://registry.npmjs.org/expo-pwa/-/expo-pwa-0.0.124.tgz"; - sha512 = "hYvQQhxATNTivWSRc9nrd1WVYJJnBG8P/SVrJ4PPu0pmsS7ZIvWt981IXYG461y9UWnTbXdZEG4UOt0Thak1Gg=="; + url = "https://registry.npmjs.org/expo-pwa/-/expo-pwa-0.0.125.tgz"; + sha512 = "A40Man5vMO1WWHwVDJr/7Y2N6vwHCQDX4gQ1LM9GngEFHRMK2lxx/tMVV2v+UF2g1lr84RVRGzMvO/tV9LYiaA=="; }; }; "exponential-backoff-3.1.1" = { @@ -34371,13 +34110,13 @@ let sha512 = "KWKaceCwKQU0+HPoop6gn4eOHk50bBv/VxjJtGMfwmJt3D29JpN4H4eisCtIPA+a8GVBam+ldMMpMjJUvpDyHw=="; }; }; - "fbjs-3.0.4" = { + "fbjs-3.0.5" = { name = "fbjs"; packageName = "fbjs"; - version = "3.0.4"; + version = "3.0.5"; src = fetchurl { - url = "https://registry.npmjs.org/fbjs/-/fbjs-3.0.4.tgz"; - sha512 = "ucV0tDODnGV3JCnnkmoszb5lf4bNpzjv80K41wd4k798Etq+UYD0y0TIfalLjZoKgjive6/adkRnszwapiDgBQ=="; + url = "https://registry.npmjs.org/fbjs/-/fbjs-3.0.5.tgz"; + sha512 = "ztsSx77JBtkuMrEypfhgc3cI0+0h+svqeie7xHbh1k/IKdcydnvadp/mUaGgjAOXQmQSxsqgaRhS3q9fy+1kxg=="; }; }; "fbjs-css-vars-1.0.2" = { @@ -36054,13 +35793,13 @@ let sha512 = "+vSd9frUnapVC2RZYfL3FCB2p3g4TBhaUmrsWlSudsGdnxIuUvBB2QM1VZeBtc49QFwrp+wQLrDs3+xxDgI5gQ=="; }; }; - "fs-monkey-1.0.3" = { + "fs-monkey-1.0.4" = { name = "fs-monkey"; packageName = "fs-monkey"; - version = "1.0.3"; + version = "1.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/fs-monkey/-/fs-monkey-1.0.3.tgz"; - sha512 = "cybjIfiiE+pTWicSCLFHSrXZ6EilF30oh91FDP9S2B051prEa7QWfrVTQm10/dDpswBDXZugPa1Ogu8Yh+HV0Q=="; + url = "https://registry.npmjs.org/fs-monkey/-/fs-monkey-1.0.4.tgz"; + sha512 = "INM/fWAxMICjttnD0DX1rBvinKskj5G1w+oy/pnm9u/tSlnBrzFonJMcalKJ30P8RRsPzKcCG7Q8l0jx5Fh9YQ=="; }; }; "fs-readdir-recursive-1.1.0" = { @@ -36801,6 +36540,15 @@ let sha512 = "+5s0SJbGoyiJTZZ2JTpFPLMPSch72KEqGOTvQsBqg0RBWvwhWUSYZFAtz3TPW0GXJuLBJPts1E241iHg+VRfhg=="; }; }; + "get-uri-6.0.1" = { + name = "get-uri"; + packageName = "get-uri"; + version = "6.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/get-uri/-/get-uri-6.0.1.tgz"; + sha512 = "7ZqONUVqaabogsYNWlYj0t3YZaL6dhuEueZXGF+/YVmf6dHmaFg8/6psJKqhx9QykIDKzpGcy2cn4oV4YC7V/Q=="; + }; + }; "get-value-2.0.6" = { name = "get-value"; packageName = "get-value"; @@ -39916,6 +39664,15 @@ let sha512 = "n2hY8YdoRE1i7r6M0w9DIw5GgZN0G25P8zLCRQ8rjXtTU3vsNFBI/vWK/UIeE6g5MUUz6avwAPXmL6Fy9D/90w=="; }; }; + "http-proxy-agent-7.0.0" = { + name = "http-proxy-agent"; + packageName = "http-proxy-agent"; + version = "7.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/http-proxy-agent/-/http-proxy-agent-7.0.0.tgz"; + sha512 = "+ZT+iBxVUQ1asugqnD6oWoRiS25AkjNfG085dKJGtGxkdwLQrMKU5wJr2bOOFAXzKcTuqq+7fZlTMgG3SRfIYQ=="; + }; + }; "http-proxy-middleware-0.19.1" = { name = "http-proxy-middleware"; packageName = "http-proxy-middleware"; @@ -40069,22 +39826,22 @@ let sha512 = 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"https://registry.npmjs.org/lodash.clonedeepwith/-/lodash.clonedeepwith-4.5.0.tgz"; + sha512 = "QRBRSxhbtsX1nc0baxSkkK5WlVTTm/s48DSukcGcWZwIyI8Zz+lB+kFiELJXtzfH4Aj6kMWQ1VWW4U5uUDgZMA=="; + }; + }; "lodash.debounce-4.0.8" = { name = "lodash.debounce"; packageName = "lodash.debounce"; @@ -49231,13 +48763,13 @@ let sha512 = "jumlc0BIUrS3qJGgIkWZsyfAM7NCWiBcCDhnd+3NNM5KbBmLTgHVfWBcg6W+rLUsIpzpERPsvwUP7CckAQSOoA=="; }; }; - "lru-cache-9.1.1" = { + "lru-cache-9.1.2" = { name = "lru-cache"; packageName = "lru-cache"; - version = "9.1.1"; + version = "9.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/lru-cache/-/lru-cache-9.1.1.tgz"; - sha512 = "65/Jky17UwSb0BuB9V+MyDpsOtXKmYwzhyl+cOa9XUiI4uV2Ouy/2voFP3+al0BjZbJgMBD8FojMpAf+Z+qn4A=="; + url = "https://registry.npmjs.org/lru-cache/-/lru-cache-9.1.2.tgz"; + sha512 = "ERJq3FOzJTxBbFjZ7iDs+NiK4VI9Wz+RdrrAB8dio1oV+YvdPzUEE4QNiT2VD51DkIbCYRUUzCRkssXCHqSnKQ=="; }; }; "lru-queue-0.1.0" = { @@ -49565,15 +49097,6 @@ let sha512 = 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"memfs-3.5.2" = { name = "memfs"; packageName = "memfs"; - version = "3.5.1"; + version = "3.5.2"; src = fetchurl { - url = "https://registry.npmjs.org/memfs/-/memfs-3.5.1.tgz"; - sha512 = "UWbFJKvj5k+nETdteFndTpYxdeTMox/ULeqX5k/dpaQJCCFmj5EeKv3dBcyO2xmkRAx2vppRu5dVG7SOtsGOzA=="; + url = "https://registry.npmjs.org/memfs/-/memfs-3.5.2.tgz"; + sha512 = "4kbWXbVZ+LU4XFDS2CuA7frnwz2HxCMB/0yOXc86q7aCQrfWKkL11t6al1e2CsVC7uhnBNTQ1TfUsAxVauO9IQ=="; }; }; "memoizee-0.4.15" = { @@ -50987,13 +50519,13 @@ let sha512 = "AY9lGmUznFNsLr7Vm3hLCT7Ar0bN6Wninp3qA0E0/JBU4uRTRI4fIgM1I3+nbjLf23mwh+vrHut0ML63QB2acA=="; }; }; - "metalsmith-2.5.1" = { + "metalsmith-2.6.0" = { name = "metalsmith"; packageName = "metalsmith"; - version = "2.5.1"; + version = "2.6.0"; src = fetchurl { - url = "https://registry.npmjs.org/metalsmith/-/metalsmith-2.5.1.tgz"; - sha512 = "/jpf9JXYAvA16VlJDRlZRktcsjTgMHDwusiNLo1byU7ocUNWm2F7zQukrVtBslNNNi1gWnXbcxTINYdsi5zrAA=="; + url = "https://registry.npmjs.org/metalsmith/-/metalsmith-2.6.0.tgz"; + sha512 = "YgcpGZboY/Sw85a+bkaY+hPaGMONCBjP2X1ila4yYxCJBOwZT+0tg0mIIHmd5bGwADr+TORYhTwTO0sAggSmTA=="; }; }; "method-missing-1.2.4" = { @@ -51077,22 +50609,22 @@ let sha512 = "+WoovN/ppKolQOFIAajxi7Lu9kInbPxFuTBVEavFcL8eAfVstoc5MocPmqBeAdBOJV00uaVjegzH4+MA0DN/uA=="; }; }; - "micromark-3.1.0" = { + "micromark-3.2.0" = { name = "micromark"; packageName = "micromark"; - version = "3.1.0"; + version = "3.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/micromark/-/micromark-3.1.0.tgz"; - sha512 = "6Mj0yHLdUZjHnOPgr5xfWIMqMWS12zDN6iws9SLuSz76W8jTtAv24MN4/CL7gJrl5vtxGInkkqDv/JIoRsQOvA=="; + url = "https://registry.npmjs.org/micromark/-/micromark-3.2.0.tgz"; + sha512 = "uD66tJj54JLYq0De10AhWycZWGQNUvDI55xPgk2sQM5kn1JYlhbCMTtEeT27+vAhW2FBQxLlOmS3pmA7/2z4aA=="; }; }; - "micromark-core-commonmark-1.0.6" = { + "micromark-core-commonmark-1.1.0" = { name = "micromark-core-commonmark"; packageName = "micromark-core-commonmark"; - version = "1.0.6"; + version = "1.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/micromark-core-commonmark/-/micromark-core-commonmark-1.0.6.tgz"; - sha512 = "K+PkJTxqjFfSNkfAhp4GB+cZPfQd6dxtTXnf+RjZOV7T4EEXnvgzOcnp+eSTmpGk9d1S9sL6/lqrgSNn/s0HZA=="; + url = "https://registry.npmjs.org/micromark-core-commonmark/-/micromark-core-commonmark-1.1.0.tgz"; + sha512 = "BgHO1aRbolh2hcrzL2d1La37V0Aoz73ymF8rAcKnohLy93titmv62E0gP8Hrx9PKcKrqCZ1BbLGbP3bEhoXYlw=="; }; }; "micromark-extension-footnote-0.3.2" = { @@ -51113,13 +50645,13 @@ let sha512 = "q6nPLFCMTLtfsctAuS0Xh4vaolxSFUWUWR6PZSrXXiRy+SANGllpcqdXFv2z07l0Xz/6Hl40hK0ffNCJPH2n1A=="; }; }; - "micromark-extension-frontmatter-1.1.0" = { + "micromark-extension-frontmatter-1.1.1" = { name = "micromark-extension-frontmatter"; packageName = "micromark-extension-frontmatter"; - version = "1.1.0"; + version = "1.1.1"; src = fetchurl { - url = 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"https://registry.npmjs.org/micromark-extension-gfm-footnote/-/micromark-extension-gfm-footnote-1.1.2.tgz"; + sha512 = "Yxn7z7SxgyGWRNa4wzf8AhYYWNrwl5q1Z8ii+CSTTIqVkmGZF1CElX2JI8g5yGoM3GAman9/PVCUFUSJ0kB/8Q=="; }; }; "micromark-extension-gfm-strikethrough-0.6.5" = { @@ -51176,13 +50708,13 @@ let sha512 = "PpOKlgokpQRwUesRwWEp+fHjGGkZEejj83k9gU5iXCbDG+XBA92BqnRKYJdfqfkrRcZRgGuPuXb7DaK/DmxOhw=="; }; }; - "micromark-extension-gfm-strikethrough-1.0.5" = { + "micromark-extension-gfm-strikethrough-1.0.7" = { name = "micromark-extension-gfm-strikethrough"; packageName = "micromark-extension-gfm-strikethrough"; - version = "1.0.5"; + version = "1.0.7"; src = fetchurl { - url = "https://registry.npmjs.org/micromark-extension-gfm-strikethrough/-/micromark-extension-gfm-strikethrough-1.0.5.tgz"; - sha512 = "X0oI5eYYQVARhiNfbETy7BfLSmSilzN1eOuoRnrf9oUNsPRrWOAe9UqSizgw1vNxQBfOwL+n2610S3bYjVNi7w=="; + url = "https://registry.npmjs.org/micromark-extension-gfm-strikethrough/-/micromark-extension-gfm-strikethrough-1.0.7.tgz"; + sha512 = "sX0FawVE1o3abGk3vRjOH50L5TTLr3b5XMqnP9YDRb34M0v5OoZhG+OHFz1OffZ9dlwgpTBKaT4XW/AsUVnSDw=="; }; }; "micromark-extension-gfm-table-0.4.3" = { @@ -51194,13 +50726,13 @@ let sha512 = "hVGvESPq0fk6ALWtomcwmgLvH8ZSVpcPjzi0AjPclB9FsVRgMtGZkUcpE0zgjOCFAznKepF4z3hX8z6e3HODdA=="; }; }; - "micromark-extension-gfm-table-1.0.6" = { + "micromark-extension-gfm-table-1.0.7" = { name = "micromark-extension-gfm-table"; packageName = "micromark-extension-gfm-table"; - version = "1.0.6"; + version = "1.0.7"; src = fetchurl { - url = "https://registry.npmjs.org/micromark-extension-gfm-table/-/micromark-extension-gfm-table-1.0.6.tgz"; - sha512 = "92pq7Q+T+4kXH4M6kL+pc8WU23Z9iuhcqmtYFWdFWjm73ZscFpH2xE28+XFpGWlvgq3LUwcN0XC0PGCicYFpgA=="; + url = "https://registry.npmjs.org/micromark-extension-gfm-table/-/micromark-extension-gfm-table-1.0.7.tgz"; + sha512 = 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"micromark-factory-label-1.0.2" = { + "micromark-factory-label-1.1.0" = { name = "micromark-factory-label"; packageName = "micromark-factory-label"; - version = "1.0.2"; + version = "1.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/micromark-factory-label/-/micromark-factory-label-1.0.2.tgz"; - sha512 = "CTIwxlOnU7dEshXDQ+dsr2n+yxpP0+fn271pu0bwDIS8uqfFcumXpj5mLn3hSC8iw2MUr6Gx8EcKng1dD7i6hg=="; + url = "https://registry.npmjs.org/micromark-factory-label/-/micromark-factory-label-1.1.0.tgz"; + sha512 = "OLtyez4vZo/1NjxGhcpDSbHQ+m0IIGnT8BoPamh+7jVlzLJBH98zzuCoUeMxvM6WsNeh8wx8cKvqLiPHEACn0w=="; }; }; - "micromark-factory-mdx-expression-1.0.8" = { + "micromark-factory-mdx-expression-1.0.9" = { name = "micromark-factory-mdx-expression"; packageName = "micromark-factory-mdx-expression"; - version = "1.0.8"; + version = "1.0.9"; src = fetchurl { - url = "https://registry.npmjs.org/micromark-factory-mdx-expression/-/micromark-factory-mdx-expression-1.0.8.tgz"; - sha512 = 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= { name = "micromark-util-resolve-all"; packageName = "micromark-util-resolve-all"; - version = "1.0.0"; + version = "1.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/micromark-util-resolve-all/-/micromark-util-resolve-all-1.0.0.tgz"; - sha512 = "CB/AGk98u50k42kvgaMM94wzBqozSzDDaonKU7P7jwQIuH2RU0TeBqGYJz2WY1UdihhjweivStrJ2JdkdEmcfw=="; + url = "https://registry.npmjs.org/micromark-util-resolve-all/-/micromark-util-resolve-all-1.1.0.tgz"; + sha512 = "b/G6BTMSg+bX+xVCshPTPyAu2tmA0E4X98NSR7eIbeC6ycCqCeE7wjfDIgzEbkzdEVJXRtOG4FbEm/uGbCRouA=="; }; }; - "micromark-util-sanitize-uri-1.1.0" = { + "micromark-util-sanitize-uri-1.2.0" = { name = "micromark-util-sanitize-uri"; packageName = "micromark-util-sanitize-uri"; - version = "1.1.0"; + version = "1.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/micromark-util-sanitize-uri/-/micromark-util-sanitize-uri-1.1.0.tgz"; - sha512 = "RoxtuSCX6sUNtxhbmsEFQfWzs8VN7cTctmBPvYivo98xb/kDEoTCtJQX5wyzIYEmk/lvNFTat4hL8oW0KndFpg=="; + url = "https://registry.npmjs.org/micromark-util-sanitize-uri/-/micromark-util-sanitize-uri-1.2.0.tgz"; + sha512 = "QO4GXv0XZfWey4pYFndLUKEAktKkG5kZTdUNaTAkzbuJxn2tNBOr+QtxR2XpWaMhbImT2dPzyLrPXLlPhph34A=="; }; }; - "micromark-util-subtokenize-1.0.2" = { + "micromark-util-subtokenize-1.1.0" = { name = "micromark-util-subtokenize"; packageName = "micromark-util-subtokenize"; - version = "1.0.2"; + version = "1.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/micromark-util-subtokenize/-/micromark-util-subtokenize-1.0.2.tgz"; - sha512 = "d90uqCnXp/cy4G881Ub4psE57Sf8YD0pim9QdjCRNjfas2M1u6Lbt+XZK9gnHL2XFhnozZiEdCa9CNfXSfQ6xA=="; + url = "https://registry.npmjs.org/micromark-util-subtokenize/-/micromark-util-subtokenize-1.1.0.tgz"; + sha512 = "kUQHyzRoxvZO2PuLzMt2P/dwVsTiivCK8icYTeR+3WgbuPqfHgPPy7nFKbeqRivBvn/3N3GBiNC+JRTMSxEC7A=="; }; }; - "micromark-util-symbol-1.0.1" = { + "micromark-util-symbol-1.1.0" = { name = "micromark-util-symbol"; packageName = "micromark-util-symbol"; - 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"muggle-string"; + version = "0.3.1"; + src = fetchurl { + url = "https://registry.npmjs.org/muggle-string/-/muggle-string-0.3.1.tgz"; + sha512 = "ckmWDJjphvd/FvZawgygcUeQCxzvohjFO5RxTjj4eq8kw359gFF3E1brjfI+viLMxss5JrHTDRHZvu2/tuy0Qg=="; + }; + }; "multer-1.4.4" = { name = "multer"; packageName = "multer"; @@ -53814,13 +53355,13 @@ let sha512 = "P6qw6kenNXP+J9XlKJNi/MNHUQ+Lx5K8FEcSfX7/w8KJdZan5+BB5MKzuNgL2RTjHG1Svg8SehfseVEp8zAqwA=="; }; }; - "ngrok-4.3.3" = { + "ngrok-5.0.0-beta.2" = { name = "ngrok"; packageName = "ngrok"; - version = "4.3.3"; + version = "5.0.0-beta.2"; src = fetchurl { - url = "https://registry.npmjs.org/ngrok/-/ngrok-4.3.3.tgz"; - sha512 = "a2KApnkiG5urRxBPdDf76nNBQTnNNWXU0nXw0SsqsPI+Kmt2lGf9TdVYpYrHMnC+T9KhcNSWjCpWqBgC6QcFvw=="; + url = "https://registry.npmjs.org/ngrok/-/ngrok-5.0.0-beta.2.tgz"; + sha512 = "UzsyGiJ4yTTQLCQD11k1DQaMwq2/SsztBg2b34zAqcyjS25qjDpogMKPaCKHwe/APRTHeel3iDXcVctk5CNaCQ=="; }; }; "nice-try-1.0.5" = { @@ -53967,13 +53508,13 @@ let sha512 = 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"pac-resolver"; + packageName = "pac-resolver"; + version = "6.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/pac-resolver/-/pac-resolver-6.0.1.tgz"; + sha512 = "dg497MhVT7jZegPRuOScQ/z0aV/5WR0gTdRu1md+Irs9J9o+ls5jIuxjo1WfaTG+eQQkxyn5HMGvWK+w7EIBkQ=="; + }; + }; "package-hash-4.0.0" = { name = "package-hash"; packageName = "package-hash"; @@ -58423,6 +57982,15 @@ let sha512 = "ODbEPR0KKHqECXW1GoxdDb+AZvULmXjVPy4rt+pGo2+TnjJTIPJQSVS6N63n8T2Ip+syHhbn52OewKicV0373w=="; }; }; + "pathe-1.1.1" = { + name = "pathe"; + packageName = "pathe"; + version = "1.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/pathe/-/pathe-1.1.1.tgz"; + sha512 = "d+RQGp0MAYTIaDBIMmOfMwz3E+LOZnxx1HZd5R18mmCZY0QBlK0LDZfPc8FW8Ed2DlvsuE6PRjroDY+wg4+j/Q=="; + }; + }; "pathval-1.1.1" = { name = "pathval"; packageName = "pathval"; @@ -60835,13 +60403,13 @@ let sha512 = "2UzApPuxi2yRoyMlXMazgR6UcH9DKJhNgCviIwY3ixZ9THWSSrUww5vkiZ3C48WvpFl1M1y/oU63deSy1puWEA=="; }; }; - "prettier-plugin-astro-0.8.1" = { + "prettier-plugin-astro-0.10.0" = { name = "prettier-plugin-astro"; packageName = "prettier-plugin-astro"; - version = "0.8.1"; + version = "0.10.0"; src = fetchurl { - url = "https://registry.npmjs.org/prettier-plugin-astro/-/prettier-plugin-astro-0.8.1.tgz"; - sha512 = "lJ/mG/Lz/ccSwNtwqpFS126mtMVzFVyYv0ddTF9wqwrEG4seECjKDAyw/oGv915rAcJi8jr89990nqfpmG+qdg=="; + url = "https://registry.npmjs.org/prettier-plugin-astro/-/prettier-plugin-astro-0.10.0.tgz"; + sha512 = "dPzop0gKZyVGpTDQmfy+e7FKXC9JT3mlpfYA2diOVz+Ui+QR1U4G/s+OesKl2Hib2JJOtAYJs/l+ovgT0ljlFA=="; }; }; "prettier-plugin-svelte-2.10.1" = { @@ -60925,15 +60493,6 @@ let sha512 = "cvpcHTc42lcsvOOAzd3XuNWTcvk1Jmnzqeu+WsOuiPmxUJTnkbAcFNsRKvEpBEUFVUgy/GTZLulZDcDEi+CIlA=="; }; }; - "pretty-format-29.5.0" = { - name = "pretty-format"; - packageName = "pretty-format"; - version = "29.5.0"; - src = fetchurl { - url = "https://registry.npmjs.org/pretty-format/-/pretty-format-29.5.0.tgz"; - sha512 = 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"socket.io-client"; packageName = "socket.io-client"; - version = "4.6.1"; + version = "4.6.2"; src = fetchurl { - url = "https://registry.npmjs.org/socket.io-client/-/socket.io-client-4.6.1.tgz"; - sha512 = "5UswCV6hpaRsNg5kkEHVcbBIXEYoVbMQaHJBXJCyEQ+CiFPV1NIOY0XOFWG4XR4GZcB8Kn6AsRs/9cy9TbqVMQ=="; + url = "https://registry.npmjs.org/socket.io-client/-/socket.io-client-4.6.2.tgz"; + sha512 = "OwWrMbbA8wSqhBAR0yoPK6EdQLERQAYjXb3A0zLpgxfM1ZGLKoxHx8gVmCHA6pcclRX5oA/zvQf7bghAS11jRA=="; }; }; "socket.io-parser-2.1.2" = { @@ -69187,13 +68746,13 @@ let sha512 = "1rE4dZN3kCI/E5wixd393hmbqa78vVpkKmnEJhLeWoS/C5hbFYAbcSfnWoaVH43u9ToUVtzKjguxEZq+1XZfCQ=="; }; }; - "socket.io-parser-4.2.3" = { + "socket.io-parser-4.2.4" = { name = "socket.io-parser"; packageName = "socket.io-parser"; - version = "4.2.3"; + version = "4.2.4"; src = fetchurl { - url = "https://registry.npmjs.org/socket.io-parser/-/socket.io-parser-4.2.3.tgz"; - sha512 = 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version = "1.0.5"; - src = fetchurl { - url = "https://registry.npmjs.org/tmpl/-/tmpl-1.0.5.tgz"; - sha512 = "3f0uOEAQwIqGuWW2MVzYg8fV/QNnc/IpuJNG837rLuczAaLVHslWHZQj4IGiEl5Hs3kkbhwL9Ab7Hrsmuj+Smw=="; - }; - }; "to-absolute-glob-2.0.2" = { name = "to-absolute-glob"; packageName = "to-absolute-glob"; @@ -74894,15 +74435,6 @@ let sha512 = "Y/arvbn+rrz3JCKl9C4kVNfTfSm2/mEp5FSz5EsZSANGPSlQrpRI5M4PKF+mJnE52jOO90PnPSc3Ur3bTQw0gA=="; }; }; - "ts-jest-29.1.0" = { - name = "ts-jest"; - packageName = "ts-jest"; - version = "29.1.0"; - src = fetchurl { - url = "https://registry.npmjs.org/ts-jest/-/ts-jest-29.1.0.tgz"; - sha512 = "ZhNr7Z4PcYa+JjMl62ir+zPiNJfXJN6E8hSLnaUKhOgqcn8vb3e537cpkd0FuAfRK3sR1LSqM1MOhliXNgOFPA=="; - }; - }; "ts-loader-9.4.3" = { name = "ts-loader"; packageName = "ts-loader"; @@ -75056,13 +74588,13 @@ let sha512 = "tGyy4dAjRIEwI7BzsB0lynWgOpfqjUdq91XXAlIWD2OwKBH7oCl/GZG/HT4BOHrTlPMOASlMQ7veyTqpmRcrNA=="; }; }; - "tslib-2.5.2" = { + "tslib-2.5.3" = { name = "tslib"; packageName = "tslib"; - version = "2.5.2"; + version = "2.5.3"; src = fetchurl { - url = "https://registry.npmjs.org/tslib/-/tslib-2.5.2.tgz"; - sha512 = "5svOrSA2w3iGFDs1HibEVBGbDrAY82bFQ3HZ3ixB+88nsbsWQoKqDRb5UBYAUPEzbBn6dAp5gRNXglySbx1MlA=="; + url = "https://registry.npmjs.org/tslib/-/tslib-2.5.3.tgz"; + sha512 = "mSxlJJwl3BMEQCUNnxXBU9jP4JBktcEGhURcPR6VQVlnP0FdDEsIaz0C35dXNGLyRfrATNofF0F5p2KPxQgB+w=="; }; }; "tslint-5.20.1" = { @@ -75488,6 +75020,15 @@ let sha512 = "JaPw5U9ixP0XcpUbQoVSbxSDcK/K4nww20C3kjm9yE6cDRRhptU28AH60VWf9ltXmCrIfIbtt9J+2OUk2Uqiaw=="; }; }; + "type-fest-3.11.1" = { + name = "type-fest"; + packageName = "type-fest"; + version = "3.11.1"; + src = fetchurl { + url = "https://registry.npmjs.org/type-fest/-/type-fest-3.11.1.tgz"; + sha512 = "aCuRNRERRVh33lgQaJRlUxZqzfhzwTrsE98Mc3o3VXqmiaQdHacgUtJ0esp+7MvZ92qhtzKPeusaX6vIEcoreA=="; + }; + }; "type-fest-3.5.1" = { name = "type-fest"; packageName = "type-fest"; @@ -75695,13 +75236,22 @@ let sha512 = 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"typescript-auto-import-cache-0.2.1" = { @@ -77891,15 +77441,6 @@ let sha512 = "n9Mvkk3qlv5hpQ9WHDCNn7uGR8k8kNLpVj37fS8qTPK053ZFJ34Ei9CAbDqmsk/p4AGsV/2bfDdobctC1RaZFg=="; }; }; - "v8-to-istanbul-9.1.0" = { - name = "v8-to-istanbul"; - packageName = "v8-to-istanbul"; - version = "9.1.0"; - src = fetchurl { - url = "https://registry.npmjs.org/v8-to-istanbul/-/v8-to-istanbul-9.1.0.tgz"; - sha512 = "6z3GW9x8G1gd+JIIgQQQxXuiJtCXeAjp6RaPEPLv62mH3iPHPxV6W3robxtCzNErRo6ZwTmzWhsbNvjyEBKzKA=="; - }; - }; "v8flags-3.2.0" = { name = "v8flags"; packageName = "v8flags"; @@ -78476,6 +78017,15 @@ let sha512 = "bIOaZx4+Bf6a7sIORfmYnyKLDLk/lhVym6rjYlq+vkitYKnhFmUpmPpDTCltWFrUTlGKs6sCeoDWfMA0oOOneA=="; }; }; + "version-guard-1.1.1" = { + name = "version-guard"; + packageName = "version-guard"; + version = "1.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/version-guard/-/version-guard-1.1.1.tgz"; + sha512 = 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"volar-service-html-0.0.4" = { + name = "volar-service-html"; + packageName = "volar-service-html"; + version = "0.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/volar-service-html/-/volar-service-html-0.0.4.tgz"; + sha512 = "QGiecZxM5fQLpW8DpSDloe+mMY0DI508Ei8N6nKcpV6DAttCrM01VyZvjiGuov8fDyqL4fCAvvjIo52nPTpKXQ=="; + }; + }; + "volar-service-prettier-0.0.4" = { + name = "volar-service-prettier"; + packageName = "volar-service-prettier"; + version = "0.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/volar-service-prettier/-/volar-service-prettier-0.0.4.tgz"; + sha512 = "9zKJQX660rAGE76p/ZUoEJr8PlFM1sLJu1FABbZ+Sp3Hv1qgZ2aoHBTF+h6Ky0NCwc3DN5Sy/0wOY7JElcbH+Q=="; + }; + }; + "volar-service-typescript-0.0.4" = { + name = "volar-service-typescript"; + packageName = "volar-service-typescript"; + version = "0.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/volar-service-typescript/-/volar-service-typescript-0.0.4.tgz"; + sha512 = "Ag7H7Lrtz742S3bl8puJ5Ut/w0jx5WwdAskksPZ/bd7DYuNgoUDgZnHCs34WGu7o880Ndq+9IcRwWZ+S1w97eQ=="; + }; + }; + "volar-service-typescript-twoslash-queries-0.0.4" = { + name = "volar-service-typescript-twoslash-queries"; + packageName = "volar-service-typescript-twoslash-queries"; + version = "0.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/volar-service-typescript-twoslash-queries/-/volar-service-typescript-twoslash-queries-0.0.4.tgz"; + sha512 = "nAhoOjCjR1bcS+DcO4sSGTjjGdKHUyLrDRsXlcTZ/8dVS95WzwYgkTBGBfosT19IYzDPcDCVSxwaLjESL3eZ7Q=="; + }; + }; "vsce-2.15.0" = { name = "vsce"; packageName = "vsce"; @@ -78899,13 +78503,13 @@ let sha512 = "mIb5VMXM5jI97HzCk2eadI1K//rCEZXte0wBqA7PGXsyJH4KTyJUaYk9MR+mbfpUl2vMi3HZw9GUOLGYLc6l5w=="; }; }; - "vscode-html-languageservice-5.0.5" = { + "vscode-html-languageservice-5.0.6" = { name = "vscode-html-languageservice"; packageName = "vscode-html-languageservice"; - version = "5.0.5"; + version = "5.0.6"; src = fetchurl { - url = "https://registry.npmjs.org/vscode-html-languageservice/-/vscode-html-languageservice-5.0.5.tgz"; - sha512 = "7788ZT+I7/UhFoI4+bzaAiGGZEW7X39kTeuytLtw6jJA6W7ez85bWKYoFDcwrPNmywj3n/IkU9Op9asaje44jg=="; + url = "https://registry.npmjs.org/vscode-html-languageservice/-/vscode-html-languageservice-5.0.6.tgz"; + sha512 = "gCixNg6fjPO7+kwSMBAVXcwDRHdjz1WOyNfI0n5Wx0J7dfHG8ggb3zD1FI8E2daTZrwS1cooOiSoc1Xxph4qRQ=="; }; }; "vscode-json-languageservice-3.11.0" = { @@ -79574,15 +79178,6 @@ let sha512 = "9YlCL/ynK3CTlrSRrDxZvUauLzAswPCrsaCgilqFevUYpeEW0/3ScEjaa3kbW/T0ghhkEr7mv+fpjqn1Y1YuTA=="; }; }; - "walker-1.0.8" = { - name = "walker"; - packageName = "walker"; - version = "1.0.8"; - src = fetchurl { - url = "https://registry.npmjs.org/walker/-/walker-1.0.8.tgz"; - sha512 = "ts/8E8l5b7kY0vlWLewOkDXMmPdLcVV4GmOQLyxuSswIJsweeFZtAsMF7k1Nszz+TYBQrlYRmzOnr398y1JemQ=="; - }; - }; "ware-1.3.0" = { name = "ware"; packageName = "ware"; @@ -79898,13 +79493,13 @@ let sha512 = "gT5DP72KInmE/3azEaQrISjTvLYlSM0j1Ezhht/KLVkrqtv10JoP/RXhwmX/frrutOPuSq3o5Vq0ehR/4Vmd1g=="; }; }; - "webpack-5.84.1" = { + "webpack-5.85.0" = { name = "webpack"; packageName = "webpack"; - version = "5.84.1"; + version = "5.85.0"; src = fetchurl { - url = "https://registry.npmjs.org/webpack/-/webpack-5.84.1.tgz"; - sha512 = "ZP4qaZ7vVn/K8WN/p990SGATmrL1qg4heP/MrVneczYtpDGJWlrgZv55vxaV2ul885Kz+25MP2kSXkPe3LZfmg=="; + url = "https://registry.npmjs.org/webpack/-/webpack-5.85.0.tgz"; + sha512 = "7gazTiYqwo5OSqwH1tigLDL2r3qDeP2dOKYgd+LlXpsUMqDTklg6tOghexqky0/+6QY38kb/R/uRPUleuL43zg=="; }; }; "webpack-bundle-analyzer-3.9.0" = { @@ -79916,13 +79511,13 @@ let sha512 = "Ob8amZfCm3rMB1ScjQVlbYYUEJyEjdEtQ92jqiFUYt5VkEeO2v5UMbv49P/gnmCZm3A6yaFQzCBvpZqN4MUsdA=="; }; }; - "webpack-bundle-analyzer-4.8.0" = { + "webpack-bundle-analyzer-4.9.0" = { name = "webpack-bundle-analyzer"; packageName = "webpack-bundle-analyzer"; - version = "4.8.0"; + version = "4.9.0"; src = fetchurl { - url = "https://registry.npmjs.org/webpack-bundle-analyzer/-/webpack-bundle-analyzer-4.8.0.tgz"; - sha512 = "ZzoSBePshOKhr+hd8u6oCkZVwpVaXgpw23ScGLFpR6SjYI7+7iIWYarjN6OEYOfRt8o7ZyZZQk0DuMizJ+LEIg=="; + url = "https://registry.npmjs.org/webpack-bundle-analyzer/-/webpack-bundle-analyzer-4.9.0.tgz"; + sha512 = "+bXGmO1LyiNx0i9enBu3H8mv42sj/BJWhZNFwjz92tVnBa9J3JMGo2an2IXlEleoDOPn/Hofl5hr/xCpObUDtw=="; }; }; "webpack-cli-4.10.0" = { @@ -81311,13 +80906,13 @@ let sha512 = "N1XQngeqMBoj9wM4ZFadVV2MymImeiFfYD+fJrNlcVcOHsJFFQe7n3b+aBoTPwARuq2HQxukfzVpQmAk1gN4sQ=="; }; }; - "xdl-60.0.8" = { + "xdl-60.0.9" = { name = "xdl"; packageName = "xdl"; - version = "60.0.8"; + version = "60.0.9"; src = fetchurl { - url = "https://registry.npmjs.org/xdl/-/xdl-60.0.8.tgz"; - sha512 = "9wG6D23HrgkndebeBRfl7zHx0NOgokOwabemx0iswcnBKlEcVOh9ThcQW7RZq+rJ9u8ZL8T4CE5OGAv3pB4Kkg=="; + url = "https://registry.npmjs.org/xdl/-/xdl-60.0.9.tgz"; + sha512 = "pM9UCwv53KLcN6CK3cf+GSUwrLsO8X9aatucLAQ9YelyWRj7BSgcayG51QNlr5eFJOdtTH7mOhZBgbj7rFEVqg=="; }; }; "xdm-2.1.0" = { @@ -82311,13 +81906,13 @@ let sha512 = "9Ni+uXWeFix9+1t7s1q40zZdbcpdi/OwgD4N4cVaqI+bppPciOOXQ/RSggannwZu8m8zrSWELn6/93G7308jgg=="; }; }; - "yeoman-environment-3.18.4" = { + "yeoman-environment-3.19.3" = { name = "yeoman-environment"; packageName = "yeoman-environment"; - version = "3.18.4"; + version = "3.19.3"; src = fetchurl { - url = "https://registry.npmjs.org/yeoman-environment/-/yeoman-environment-3.18.4.tgz"; - sha512 = "/BN8fR3XJOJ6blcO+jKfcCKGq9gACWS8EiMFj/I6khRz73CcTsrrmqvCBtyQ6ym8BnS5cy+YKch0pBo8KWVtLQ=="; + url = "https://registry.npmjs.org/yeoman-environment/-/yeoman-environment-3.19.3.tgz"; + sha512 = "/+ODrTUHtlDPRH9qIC0JREH8+7nsRcjDl3Bxn2Xo/rvAaVvixH5275jHwg0C85g4QsF4P6M2ojfScPPAl+pLAg=="; }; }; "yeoman-generator-5.9.0" = { @@ -82500,13 +82095,13 @@ let sha512 = "m46AKbrzKVzOzs/DZgVnG5H55N1sv1M8qZU3A8RIKbs3mrACDNeIOeilDymVb2HdmP8uwshOCF4uJ8uM9rCqJw=="; }; }; - "zwave-js-10.22.3" = { + "zwave-js-10.23.1" = { name = "zwave-js"; packageName = "zwave-js"; - version = "10.22.3"; + version = "10.23.1"; src = fetchurl { - url = "https://registry.npmjs.org/zwave-js/-/zwave-js-10.22.3.tgz"; - sha512 = "Zxy3EdCTMpX1o1fqsRm2BEC/T+CF6IM4ogNdw2C/WtzuNYn9XBzRNxeQpmNDj+h16zV0lr054GsBo0187ojqLQ=="; + url = "https://registry.npmjs.org/zwave-js/-/zwave-js-10.23.1.tgz"; + sha512 = "Sk705YnHiHGU78KJivBa04D67wmkCt5KgZlyWDIwTbvKgn2mXYU3MvSPSRZFWdtviczxJCBxnH0NaAZcWicxXg=="; }; }; "zwitch-1.0.5" = { @@ -82542,15 +82137,15 @@ in "@angular/cli" = nodeEnv.buildNodePackage { name = "_at_angular_slash_cli"; packageName = "@angular/cli"; - version = "16.0.3"; + version = "16.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/@angular/cli/-/cli-16.0.3.tgz"; - sha512 = "yZQSfjxy1Tw2nAU5q1NEiE+qGDfVSqFJPptsRSi8C1DhOtwFI4mCbUjdX9l8X+J3y+trKCyaTtPhljs12TQrWg=="; + url = "https://registry.npmjs.org/@angular/cli/-/cli-16.0.4.tgz"; + sha512 = "6+gULiKzETlB/iTjhDBAnDYY7od34kKyFQE9X/p2DejslMtRweuj7/A8RueVpTR7fIDkWH1aBeZgqIWjj/8eVw=="; }; dependencies = [ - sources."@angular-devkit/architect-0.1600.3" - sources."@angular-devkit/core-16.0.3" - sources."@angular-devkit/schematics-16.0.3" + sources."@angular-devkit/architect-0.1600.4" + sources."@angular-devkit/core-16.0.4" + sources."@angular-devkit/schematics-16.0.4" sources."@gar/promisify-1.1.3" (sources."@isaacs/cliui-8.0.2" // { dependencies = [ @@ -82571,7 +82166,7 @@ in sources."@npmcli/promise-spawn-6.0.2" sources."@npmcli/run-script-6.0.2" sources."@pkgjs/parseargs-0.11.0" - sources."@schematics/angular-16.0.3" + sources."@schematics/angular-16.0.4" sources."@sigstore/protobuf-specs-0.1.0" sources."@tootallnate/once-2.0.0" sources."@tufjs/canonical-json-1.0.0" @@ -82798,7 +82393,7 @@ in sources."path-parse-1.0.7" (sources."path-scurry-1.9.2" // { dependencies = [ - sources."lru-cache-9.1.1" + sources."lru-cache-9.1.2" ]; }) sources."picomatch-2.3.1" @@ -82806,7 +82401,7 @@ in sources."promise-inflight-1.0.1" sources."promise-retry-2.0.1" sources."punycode-2.3.0" - (sources."read-package-json-6.0.3" // { + (sources."read-package-json-6.0.4" // { dependencies = [ sources."brace-expansion-2.0.1" sources."glob-10.2.6" @@ -82870,7 +82465,7 @@ in sources."through-2.3.8" sources."tmp-0.0.33" sources."to-regex-range-5.0.1" - sources."tslib-2.5.2" + sources."tslib-2.5.3" (sources."tuf-js-1.1.6" // { dependencies = [ sources."make-fetch-happen-11.1.1" @@ -82926,105 +82521,81 @@ in "@astrojs/language-server" = nodeEnv.buildNodePackage { name = "_at_astrojs_slash_language-server"; packageName = "@astrojs/language-server"; - version = "1.0.5"; + version = "2.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/@astrojs/language-server/-/language-server-1.0.5.tgz"; - sha512 = "HG/9nWk+b9Ol9KgBz4Osg1iuq4DGI75GGF7Kvre0GT5rxksoGiJRK96Vd5NLyS7qOhAgX8SgXZ//5USF/fqsQA=="; + url = "https://registry.npmjs.org/@astrojs/language-server/-/language-server-2.0.0.tgz"; + sha512 = "mjRmNP/U2TDxRAj9vbJQhx8UAr/fADtXhRu90hT2VIofIZoPqLD6SMqOuLNQbsouiaRHdoGubi2UFRSAtdzsIg=="; }; dependencies = [ - sources."@astrojs/compiler-1.4.2" + sources."@astrojs/compiler-1.5.0" sources."@emmetio/abbreviation-2.3.3" sources."@emmetio/css-abbreviation-2.1.8" sources."@emmetio/scanner-1.0.4" - sources."@jridgewell/resolve-uri-3.1.0" - sources."@jridgewell/sourcemap-codec-1.4.14" - sources."@jridgewell/trace-mapping-0.3.18" + sources."@jridgewell/sourcemap-codec-1.4.15" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@pkgr/utils-2.4.1" + sources."@volar/kit-1.7.0" + sources."@volar/language-core-1.7.0" + sources."@volar/language-server-1.7.0" + sources."@volar/language-service-1.7.0" + sources."@volar/source-map-1.7.0" + sources."@volar/typescript-1.7.0" (sources."@vscode/emmet-helper-2.8.8" // { dependencies = [ sources."vscode-uri-2.1.2" ]; }) - sources."@vscode/l10n-0.0.14" - sources."big-integer-1.6.51" - sources."bplist-parser-0.2.0" + sources."@vscode/l10n-0.0.11" + sources."balanced-match-1.0.2" + sources."brace-expansion-2.0.1" sources."braces-3.0.2" - sources."bundle-name-3.0.0" - sources."cross-spawn-7.0.3" - sources."default-browser-4.0.0" - sources."default-browser-id-3.0.0" - sources."define-lazy-prop-3.0.0" sources."emmet-2.4.4" - sources."events-3.3.0" - (sources."execa-7.1.1" // { - dependencies = [ - sources."human-signals-4.3.1" - sources."is-stream-3.0.0" - sources."mimic-fn-4.0.0" - sources."npm-run-path-5.1.0" - sources."onetime-6.0.0" - sources."path-key-4.0.0" - sources."strip-final-newline-3.0.0" - ]; - }) sources."fast-glob-3.2.12" sources."fastq-1.15.0" sources."fill-range-7.0.1" - sources."get-stream-6.0.1" sources."glob-parent-5.1.2" - sources."human-signals-2.1.0" - sources."is-docker-3.0.0" sources."is-extglob-2.1.1" sources."is-glob-4.0.3" - sources."is-inside-container-1.0.0" sources."is-number-7.0.0" - sources."is-stream-2.0.1" - (sources."is-wsl-2.2.0" // { - dependencies = [ - sources."is-docker-2.2.1" - ]; - }) - sources."isexe-2.0.0" sources."jsonc-parser-2.3.1" - sources."merge-stream-2.0.0" + sources."lru-cache-6.0.0" sources."merge2-1.4.1" sources."micromatch-4.0.5" - sources."mimic-fn-2.1.0" - sources."npm-run-path-4.0.1" - sources."onetime-5.1.2" - sources."open-9.1.0" - sources."path-key-3.1.1" - sources."picocolors-1.0.0" + sources."minimatch-9.0.1" + sources."muggle-string-0.3.1" sources."picomatch-2.3.1" sources."prettier-2.8.8" - sources."prettier-plugin-astro-0.8.1" + sources."prettier-plugin-astro-0.10.0" sources."queue-microtask-1.2.3" + sources."request-light-0.7.0" sources."reusify-1.0.4" - (sources."run-applescript-5.0.0" // { - dependencies = [ - sources."execa-5.1.1" - ]; - }) sources."run-parallel-1.2.0" sources."s.color-0.0.15" sources."sass-formatter-0.7.6" - sources."shebang-command-2.0.0" - sources."shebang-regex-3.0.0" - sources."signal-exit-3.0.7" - sources."strip-final-newline-2.0.0" + sources."semver-7.5.1" sources."suf-log-2.5.3" - sources."synckit-0.8.5" - sources."titleize-3.0.0" sources."to-regex-range-5.0.1" - sources."tslib-2.5.2" - sources."untildify-4.0.0" - sources."vscode-css-languageservice-6.2.6" - (sources."vscode-html-languageservice-5.0.5" // { + sources."typesafe-path-0.2.2" + sources."typescript-5.1.3" + sources."volar-service-css-0.0.4" + sources."volar-service-emmet-0.0.4" + sources."volar-service-html-0.0.4" + sources."volar-service-prettier-0.0.4" + (sources."volar-service-typescript-0.0.4" // { dependencies = [ - sources."@vscode/l10n-0.0.13" + sources."jsonc-parser-3.2.0" + ]; + }) + sources."volar-service-typescript-twoslash-queries-0.0.4" + (sources."vscode-css-languageservice-6.2.6" // { + dependencies = [ + sources."@vscode/l10n-0.0.14" + ]; + }) + (sources."vscode-html-languageservice-5.0.6" // { + dependencies = [ + sources."@vscode/l10n-0.0.14" ]; }) sources."vscode-jsonrpc-8.1.0" @@ -83032,8 +82603,9 @@ in sources."vscode-languageserver-protocol-3.17.3" sources."vscode-languageserver-textdocument-1.0.10" sources."vscode-languageserver-types-3.17.3" + sources."vscode-nls-5.2.0" sources."vscode-uri-3.0.7" - sources."which-2.0.2" + sources."yallist-4.0.0" ]; buildInputs = globalBuildInputs; meta = { @@ -83045,13 +82617,110 @@ in bypassCache = true; reconstructLock = true; }; + "@babel/cli" = nodeEnv.buildNodePackage { + name = "_at_babel_slash_cli"; + packageName = "@babel/cli"; + version = "7.21.5"; + src = fetchurl { + url = "https://registry.npmjs.org/@babel/cli/-/cli-7.21.5.tgz"; + sha512 = "TOKytQ9uQW9c4np8F+P7ZfPINy5Kv+pizDIUwSVH8X5zHgYHV4AA8HE5LA450xXeu4jEfmUckTYvv1I4S26M/g=="; + }; + dependencies = [ + sources."@ampproject/remapping-2.2.1" + sources."@babel/code-frame-7.21.4" + sources."@babel/compat-data-7.22.3" + (sources."@babel/core-7.22.1" // { + dependencies = [ + sources."semver-6.3.0" + ]; + }) + sources."@babel/generator-7.22.3" + (sources."@babel/helper-compilation-targets-7.22.1" // { + dependencies = [ + sources."semver-6.3.0" + ]; + }) + sources."@babel/helper-environment-visitor-7.22.1" + sources."@babel/helper-function-name-7.21.0" + sources."@babel/helper-hoist-variables-7.18.6" + sources."@babel/helper-module-imports-7.21.4" + sources."@babel/helper-module-transforms-7.22.1" + sources."@babel/helper-simple-access-7.21.5" + sources."@babel/helper-split-export-declaration-7.18.6" + sources."@babel/helper-string-parser-7.21.5" + sources."@babel/helper-validator-identifier-7.19.1" + sources."@babel/helper-validator-option-7.21.0" + sources."@babel/helpers-7.22.3" + sources."@babel/highlight-7.18.6" + sources."@babel/parser-7.22.4" + sources."@babel/template-7.21.9" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" + sources."@jridgewell/gen-mapping-0.3.3" + sources."@jridgewell/resolve-uri-3.1.0" + sources."@jridgewell/set-array-1.1.2" + sources."@jridgewell/sourcemap-codec-1.4.14" + sources."@jridgewell/trace-mapping-0.3.18" + sources."ansi-styles-3.2.1" + sources."balanced-match-1.0.2" + sources."brace-expansion-1.1.11" + sources."browserslist-4.21.7" + sources."caniuse-lite-1.0.30001492" + sources."chalk-2.4.2" + sources."color-convert-1.9.3" + sources."color-name-1.1.3" + sources."commander-4.1.1" + sources."concat-map-0.0.1" + sources."convert-source-map-1.9.0" + sources."debug-4.3.4" + sources."electron-to-chromium-1.4.419" + sources."escalade-3.1.1" + sources."escape-string-regexp-1.0.5" + sources."fs-readdir-recursive-1.1.0" + sources."fs.realpath-1.0.0" + sources."gensync-1.0.0-beta.2" + sources."glob-7.2.3" + sources."globals-11.12.0" + sources."has-flag-3.0.0" + sources."inflight-1.0.6" + sources."inherits-2.0.4" + sources."js-tokens-4.0.0" + sources."jsesc-2.5.2" + sources."json5-2.2.3" + sources."lru-cache-5.1.1" + sources."make-dir-2.1.0" + sources."minimatch-3.1.2" + sources."ms-2.1.2" + sources."node-releases-2.0.12" + sources."once-1.4.0" + sources."path-is-absolute-1.0.1" + sources."picocolors-1.0.0" + sources."pify-4.0.1" + sources."semver-5.7.1" + sources."slash-2.0.0" + sources."supports-color-5.5.0" + sources."to-fast-properties-2.0.0" + sources."update-browserslist-db-1.0.11" + sources."wrappy-1.0.2" + sources."yallist-3.1.1" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "Babel command line."; + homepage = "https://babel.dev/docs/en/next/babel-cli"; + license = "MIT"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; "@bitwarden/cli" = nodeEnv.buildNodePackage { name = "_at_bitwarden_slash_cli"; packageName = "@bitwarden/cli"; - version = "2023.4.0"; + version = "2023.5.0"; src = fetchurl { - url = "https://registry.npmjs.org/@bitwarden/cli/-/cli-2023.4.0.tgz"; - sha512 = "3Ktjqh+oJ1TsuGer5igsW03UzyZWbGg8W/AINW4lKytdTaq/gf8MTtK3REn/VI/U4LR5ZthAni1rY8SuZh9XVw=="; + url = "https://registry.npmjs.org/@bitwarden/cli/-/cli-2023.5.0.tgz"; + sha512 = "y8g6yYGN5oykbk7iOvC/XDg4tUq4yG5PpM5kX5symMjGpLHhLyzLhRtI24Mgx5oprHaJYth7WPVA6QEPtxe1mw=="; }; dependencies = [ sources."@ampproject/remapping-2.2.1" @@ -83077,13 +82746,13 @@ in sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/plugin-proposal-export-namespace-from-7.18.9" sources."@babel/plugin-syntax-export-namespace-from-7.8.3" sources."@babel/plugin-transform-modules-commonjs-7.21.5" sources."@babel/template-7.21.9" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.0" sources."@jridgewell/set-array-1.1.2" @@ -83134,18 +82803,27 @@ in sources."argon2-0.30.3" sources."asynckit-0.4.0" sources."balanced-match-1.0.2" + sources."base64-js-1.5.1" sources."big-integer-1.6.51" + (sources."bl-4.1.0" // { + dependencies = [ + sources."readable-stream-3.6.2" + sources."safe-buffer-5.2.1" + sources."string_decoder-1.3.0" + ]; + }) sources."brace-expansion-1.1.11" sources."browser-hrtime-1.1.8" sources."browser-process-hrtime-1.0.0" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" + sources."buffer-5.7.1" sources."buffer-from-1.1.2" sources."bufferutil-4.0.7" sources."busboy-0.2.14" sources."bytes-3.1.2" sources."cache-content-type-1.0.1" sources."call-bind-1.0.2" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."canvas-2.11.2" (sources."chalk-4.1.2" // { dependencies = [ @@ -83159,7 +82837,9 @@ in sources."chardet-0.7.0" sources."chownr-2.0.0" sources."cli-cursor-3.1.0" + sources."cli-spinners-2.9.0" sources."cli-width-3.0.0" + sources."clone-1.0.4" sources."co-4.6.0" sources."co-body-6.1.0" sources."color-convert-1.9.3" @@ -83202,6 +82882,7 @@ in sources."decompress-response-4.2.1" sources."deep-equal-1.0.1" sources."deep-is-0.1.4" + sources."defaults-1.0.4" sources."define-lazy-prop-2.0.0" sources."delayed-stream-1.0.0" sources."delegates-1.0.0" @@ -83215,7 +82896,7 @@ in ]; }) sources."ee-first-1.1.1" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."emoji-regex-8.0.0" sources."encodeurl-1.0.2" (sources."encoding-0.1.13" // { @@ -83260,22 +82941,21 @@ in sources."http-assert-1.5.0" sources."http-errors-1.8.1" sources."http-proxy-agent-4.0.1" - sources."https-proxy-agent-5.0.0" + sources."https-proxy-agent-5.0.1" sources."iconv-lite-0.4.24" + sources."ieee754-1.2.1" sources."immediate-3.0.6" sources."inflation-2.0.0" sources."inflight-1.0.6" sources."inherits-2.0.4" - (sources."inquirer-8.0.0" // { - dependencies = [ - sources."rxjs-6.6.7" - ]; - }) + sources."inquirer-8.2.5" sources."is-docker-2.2.1" sources."is-fullwidth-code-point-3.0.0" sources."is-generator-function-1.0.10" + sources."is-interactive-1.0.0" sources."is-potential-custom-element-name-1.0.1" sources."is-promise-2.2.2" + sources."is-unicode-supported-0.1.0" sources."is-wsl-2.2.0" sources."isarray-0.0.1" sources."js-tokens-4.0.0" @@ -83308,6 +82988,7 @@ in sources."levn-0.3.0" sources."lie-3.3.0" sources."lodash-4.17.21" + sources."log-symbols-4.1.0" sources."lowdb-1.0.0" sources."lru-cache-5.1.1" sources."lunr-2.3.9" @@ -83360,6 +83041,7 @@ in sources."only-0.0.2" sources."open-8.4.2" sources."optionator-0.8.3" + sources."ora-5.4.1" sources."os-tmpdir-1.0.2" sources."pako-1.0.11" sources."papaparse-5.4.1" @@ -83389,11 +83071,7 @@ in sources."retry-0.12.0" sources."rimraf-3.0.2" sources."run-async-2.4.1" - (sources."rxjs-7.8.1" // { - dependencies = [ - sources."tslib-2.5.2" - ]; - }) + sources."rxjs-7.8.1" sources."safe-buffer-5.1.2" sources."safer-buffer-2.1.2" sources."saxes-5.0.1" @@ -83428,14 +83106,14 @@ in ]; }) sources."through-2.3.8" - sources."tldts-5.7.112" - sources."tldts-core-5.7.112" + sources."tldts-6.0.5" + sources."tldts-core-6.0.5" sources."tmp-0.0.33" sources."to-fast-properties-2.0.0" sources."toidentifier-1.0.1" sources."tough-cookie-4.1.2" sources."tr46-2.1.0" - sources."tslib-1.14.1" + sources."tslib-2.5.3" sources."tsscmp-1.0.6" sources."type-check-0.3.2" sources."type-fest-0.21.3" @@ -83450,12 +83128,20 @@ in sources."vary-1.1.2" sources."w3c-hr-time-1.0.2" sources."w3c-xmlserializer-2.0.0" + sources."wcwidth-1.0.1" sources."webidl-conversions-6.1.0" sources."whatwg-encoding-1.0.5" sources."whatwg-mimetype-2.3.0" sources."whatwg-url-8.7.0" sources."wide-align-1.1.5" sources."word-wrap-1.2.3" + (sources."wrap-ansi-7.0.0" // { + dependencies = [ + sources."ansi-styles-4.3.0" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + ]; + }) sources."wrappy-1.0.2" sources."ws-7.5.9" sources."xml-name-validator-3.0.0" @@ -83478,10 +83164,10 @@ in "@commitlint/cli" = nodeEnv.buildNodePackage { name = "_at_commitlint_slash_cli"; packageName = "@commitlint/cli"; - version = "17.6.3"; + version = "17.6.5"; src = fetchurl { - url = "https://registry.npmjs.org/@commitlint/cli/-/cli-17.6.3.tgz"; - sha512 = "ItSz2fd4F+CujgIbQOfNNerDF1eFlsBGEfp9QcCb1kxTYMuKTYZzA6Nu1YRRrIaaWwe2E7awUGpIMrPoZkOG3A=="; + url = "https://registry.npmjs.org/@commitlint/cli/-/cli-17.6.5.tgz"; + sha512 = "3PQrWr/uo6lzF5k7n5QuosCYnzaxP9qGBp3jhWP0Vmsa7XA6wrl9ccPqfQyXpSbQE3zBROVO3TDqgPKe4tfmLQ=="; }; dependencies = [ sources."@babel/code-frame-7.21.4" @@ -83500,14 +83186,14 @@ in sources."@commitlint/ensure-17.4.4" sources."@commitlint/execute-rule-17.4.0" sources."@commitlint/format-17.4.4" - sources."@commitlint/is-ignored-17.6.3" - sources."@commitlint/lint-17.6.3" + sources."@commitlint/is-ignored-17.6.5" + sources."@commitlint/lint-17.6.5" sources."@commitlint/load-17.5.0" sources."@commitlint/message-17.4.2" - sources."@commitlint/parse-17.4.4" + sources."@commitlint/parse-17.6.5" sources."@commitlint/read-17.5.1" sources."@commitlint/resolve-extends-17.4.4" - sources."@commitlint/rules-17.6.1" + sources."@commitlint/rules-17.6.5" sources."@commitlint/to-lines-17.4.0" (sources."@commitlint/top-level-17.4.0" // { dependencies = [ @@ -83522,19 +83208,19 @@ in sources."@jridgewell/resolve-uri-3.1.1" sources."@jridgewell/sourcemap-codec-1.4.15" sources."@jridgewell/trace-mapping-0.3.9" - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" + sources."@swc/core-1.3.61" + sources."@swc/core-darwin-arm64-1.3.61" + sources."@swc/core-darwin-x64-1.3.61" + sources."@swc/core-linux-arm-gnueabihf-1.3.61" + sources."@swc/core-linux-arm64-gnu-1.3.61" + sources."@swc/core-linux-arm64-musl-1.3.61" + sources."@swc/core-linux-x64-gnu-1.3.61" + sources."@swc/core-linux-x64-musl-1.3.61" + sources."@swc/core-win32-arm64-msvc-1.3.61" + sources."@swc/core-win32-ia32-msvc-1.3.61" + sources."@swc/core-win32-x64-msvc-1.3.61" sources."@swc/helpers-0.5.1" - sources."@swc/wasm-1.3.60" + sources."@swc/wasm-1.3.62" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" @@ -83696,9 +83382,9 @@ in sources."through2-4.0.2" sources."trim-newlines-3.0.1" sources."ts-node-10.9.1" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."type-fest-0.18.1" - sources."typescript-5.0.4" + sources."typescript-5.1.3" sources."universalify-2.0.0" sources."uri-js-4.4.1" sources."util-deprecate-1.0.2" @@ -83730,10 +83416,10 @@ in "@commitlint/config-conventional" = nodeEnv.buildNodePackage { name = "_at_commitlint_slash_config-conventional"; packageName = "@commitlint/config-conventional"; - version = "17.6.3"; + version = "17.6.5"; src = fetchurl { - url = "https://registry.npmjs.org/@commitlint/config-conventional/-/config-conventional-17.6.3.tgz"; - sha512 = "bLyHEjjRWqlLQWIgYFHmUPbEFMOOLXeF3QbUinDIJev/u9e769tkoTH9YPknEywiuIrAgZaVo+OfzAIsJP0fsw=="; + url = "https://registry.npmjs.org/@commitlint/config-conventional/-/config-conventional-17.6.5.tgz"; + sha512 = "Xl9H9KLl86NZm5CYNTNF9dcz1xelE/EbvhWIWcYxG/rn3UWYWdWmmnX2q6ZduNdLFSGbOxzUpIx61j5zxbeXxg=="; }; dependencies = [ sources."array-ify-1.0.0" @@ -83793,10 +83479,10 @@ in "@forge/cli" = nodeEnv.buildNodePackage { name = "_at_forge_slash_cli"; packageName = "@forge/cli"; - version = "6.10.0"; + version = "6.11.0"; src = fetchurl { - url = "https://registry.npmjs.org/@forge/cli/-/cli-6.10.0.tgz"; - sha512 = "N6GYlUC5rlQFwgFKnuW1lKaGFRM7lSLSipcZPfGMRjqJhpUBM0wXBrRzOH8zMLfTXYd5/XsAdvhjGMVAbzDBhw=="; + url = "https://registry.npmjs.org/@forge/cli/-/cli-6.11.0.tgz"; + sha512 = "zmnZ2kb0D9hYp1PsLgA5Jw4h2/rG+n1sAIEMIB8RyEIlCavDuVj6TJL7H8WgLDZAD5uFRHd0raG7g/zJx8vdvA=="; }; dependencies = [ sources."@ampproject/remapping-2.2.1" @@ -83830,7 +83516,7 @@ in sources."@babel/helper-validator-option-7.21.0" sources."@babel/helpers-7.22.3" sources."@babel/highlight-7.18.6" - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/plugin-proposal-class-properties-7.18.6" sources."@babel/plugin-proposal-numeric-separator-7.18.6" sources."@babel/plugin-proposal-optional-chaining-7.21.0" @@ -83843,19 +83529,19 @@ in sources."@babel/plugin-transform-typescript-7.22.3" sources."@babel/preset-typescript-7.21.5" sources."@babel/template-7.21.9" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" sources."@colors/colors-1.5.0" sources."@discoveryjs/json-ext-0.5.7" - sources."@forge/api-2.15.3" + sources."@forge/api-2.16.0" (sources."@forge/auth-0.0.1" // { dependencies = [ sources."tslib-1.14.1" ]; }) sources."@forge/babel-plugin-transform-ui-1.1.2" - sources."@forge/bundler-4.7.0" - sources."@forge/cli-shared-3.11.2" + sources."@forge/bundler-4.8.0" + sources."@forge/cli-shared-3.12.0" sources."@forge/csp-2.1.3" (sources."@forge/egress-1.2.1" // { dependencies = [ @@ -83863,11 +83549,11 @@ in sources."minimatch-5.1.6" ]; }) - sources."@forge/lint-3.4.0" - sources."@forge/manifest-4.12.0" - sources."@forge/runtime-4.3.4" + sources."@forge/lint-3.5.0" + sources."@forge/manifest-4.13.0" + sources."@forge/runtime-4.4.0" sources."@forge/storage-1.5.2" - sources."@forge/tunnel-3.4.0" + sources."@forge/tunnel-3.5.0" sources."@forge/util-1.2.3" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.0" @@ -83885,24 +83571,24 @@ in sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" sources."@polka/url-1.0.0-next.21" - (sources."@sentry-internal/tracing-7.53.1" // { + (sources."@sentry-internal/tracing-7.54.0" // { dependencies = [ sources."tslib-1.14.1" ]; }) - (sources."@sentry/core-7.53.1" // { + (sources."@sentry/core-7.54.0" // { dependencies = [ sources."tslib-1.14.1" ]; }) - (sources."@sentry/node-7.53.1" // { + (sources."@sentry/node-7.54.0" // { dependencies = [ sources."cookie-0.4.2" sources."tslib-1.14.1" ]; }) - sources."@sentry/types-7.53.1" - (sources."@sentry/utils-7.53.1" // { + sources."@sentry/types-7.54.0" + (sources."@sentry/utils-7.54.0" // { dependencies = [ sources."tslib-1.14.1" ]; @@ -83937,15 +83623,15 @@ in sources."@types/sockjs-0.3.33" sources."@types/ws-8.5.4" sources."@types/yauzl-2.10.0" - sources."@typescript-eslint/types-5.59.7" - (sources."@typescript-eslint/typescript-estree-5.59.7" // { + sources."@typescript-eslint/types-5.59.8" + (sources."@typescript-eslint/typescript-estree-5.59.8" // { dependencies = [ sources."lru-cache-6.0.0" sources."semver-7.5.1" sources."yallist-4.0.0" ]; }) - sources."@typescript-eslint/visitor-keys-5.59.7" + sources."@typescript-eslint/visitor-keys-5.59.8" sources."@webassemblyjs/ast-1.11.1" sources."@webassemblyjs/floating-point-hex-parser-1.11.1" sources."@webassemblyjs/helper-api-error-1.11.1" @@ -84064,7 +83750,7 @@ in ]; }) sources."browserify-zlib-0.2.0" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."buffer-4.9.2" sources."buffer-crc32-0.2.13" sources."buffer-from-1.1.2" @@ -84078,7 +83764,7 @@ in sources."call-bind-1.0.2" sources."call-me-maybe-1.0.2" sources."camel-case-4.1.2" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."case-1.6.3" sources."chai-4.3.7" sources."chainsaw-0.1.0" @@ -84174,7 +83860,7 @@ in sources."css-select-4.3.0" sources."css-what-6.1.0" sources."d-1.0.1" - sources."dayjs-1.11.7" + sources."dayjs-1.11.8" sources."debounce-fn-3.0.1" sources."debug-4.3.4" sources."decompress-response-6.0.0" @@ -84188,7 +83874,7 @@ in sources."define-properties-1.2.0" sources."delayed-stream-1.0.0" sources."depd-2.0.0" - sources."des.js-1.0.1" + sources."des.js-1.1.0" sources."destroy-1.2.0" sources."detect-libc-2.0.1" sources."detect-node-2.1.0" @@ -84219,7 +83905,7 @@ in }) sources."duplexer3-0.1.5" sources."ee-first-1.1.1" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" (sources."elliptic-6.5.4" // { dependencies = [ sources."bn.js-4.12.0" @@ -84313,7 +83999,7 @@ in sources."fresh-0.5.2" sources."fs-constants-1.0.0" sources."fs-extra-8.1.0" - sources."fs-monkey-1.0.3" + sources."fs-monkey-1.0.4" sources."fs.realpath-1.0.0" sources."fsevents-2.3.2" (sources."fstream-1.0.12" // { @@ -84529,7 +84215,7 @@ in sources."make-dir-3.1.0" sources."md5.js-1.3.5" sources."media-typer-0.3.0" - sources."memfs-3.5.1" + sources."memfs-3.5.2" sources."memoizee-0.4.15" sources."merge-descriptors-1.0.1" sources."merge-stream-2.0.0" @@ -84561,10 +84247,10 @@ in sources."negotiator-0.6.3" sources."neo-async-2.6.2" sources."next-tick-1.1.0" - (sources."ngrok-4.3.3" // { + (sources."ngrok-5.0.0-beta.2" // { dependencies = [ - sources."@types/node-8.10.66" sources."uuid-8.3.2" + sources."yaml-2.3.1" ]; }) sources."no-case-3.0.4" @@ -84574,7 +84260,7 @@ in sources."semver-5.7.1" ]; }) - (sources."node-abi-3.40.0" // { + (sources."node-abi-3.43.0" // { dependencies = [ sources."lru-cache-6.0.0" sources."semver-7.5.1" @@ -84840,7 +84526,7 @@ in ]; }) sources."terminal-link-2.1.1" - (sources."terser-5.17.6" // { + (sources."terser-5.17.7" // { dependencies = [ sources."commander-2.20.3" ]; @@ -84879,7 +84565,7 @@ in sources."yallist-4.0.0" ]; }) - sources."tslib-2.5.2" + sources."tslib-2.5.3" (sources."tsutils-3.21.0" // { dependencies = [ sources."tslib-1.14.1" @@ -84940,7 +84626,7 @@ in sources."schema-utils-3.1.2" ]; }) - (sources."webpack-bundle-analyzer-4.8.0" // { + (sources."webpack-bundle-analyzer-4.9.0" // { dependencies = [ sources."chalk-4.1.2" ]; @@ -84960,7 +84646,7 @@ in sources."ajv-keywords-5.1.0" sources."fast-deep-equal-3.1.3" sources."http-proxy-middleware-2.0.6" - sources."ipaddr.js-2.0.1" + sources."ipaddr.js-2.1.0" sources."rimraf-3.0.2" sources."schema-utils-4.0.1" sources."ws-8.13.0" @@ -85148,7 +84834,7 @@ in sources."decamelize-6.0.0" (sources."decamelize-keys-2.0.1" // { dependencies = [ - sources."type-fest-3.11.0" + sources."type-fest-3.11.1" ]; }) (sources."decompress-response-6.0.0" // { @@ -85418,7 +85104,7 @@ in sources."map-obj-4.3.0" (sources."meow-12.0.1" // { dependencies = [ - sources."type-fest-3.11.0" + sources."type-fest-3.11.1" ]; }) sources."merge-stream-2.0.0" @@ -85438,7 +85124,7 @@ in }) sources."normalize-package-data-5.0.0" sources."normalize-url-6.1.0" - (sources."np-8.0.1" // { + (sources."np-8.0.2" // { dependencies = [ sources."chalk-5.2.0" sources."cli-width-4.0.0" @@ -85477,7 +85163,7 @@ in sources."os-tmpdir-1.0.2" (sources."ow-1.1.1" // { dependencies = [ - sources."@sindresorhus/is-5.3.0" + sources."@sindresorhus/is-5.4.0" sources."callsites-4.0.0" ]; }) @@ -85489,14 +85175,14 @@ in (sources."p-memoize-7.1.1" // { dependencies = [ sources."mimic-fn-4.0.0" - sources."type-fest-3.11.0" + sources."type-fest-3.11.1" ]; }) sources."p-timeout-6.1.1" sources."p-try-2.2.0" (sources."package-json-8.1.0" // { dependencies = [ - sources."@sindresorhus/is-5.3.0" + sources."@sindresorhus/is-5.4.0" sources."@szmarczak/http-timer-5.0.1" sources."cacheable-lookup-7.0.0" sources."cacheable-request-10.2.10" @@ -85618,7 +85304,7 @@ in sources."to-readable-stream-1.0.0" sources."to-regex-range-5.0.1" sources."trim-newlines-5.0.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."type-fest-0.21.3" sources."typedarray-to-buffer-3.1.5" sources."types-eslintrc-1.0.3" @@ -85724,7 +85410,7 @@ in sha512 = "tJNiTfZ5Q/rrTSp8GQdq2VU76bbRq9DTyk1OhfuGlIep6bvjRbKZ+hwMmWkQ5AtCi5PqZ1zVNPyOnigdJObgOg=="; }; dependencies = [ - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@medable/mdctl-api-1.0.69" sources."@medable/mdctl-api-driver-1.0.69" sources."@medable/mdctl-axon-tools-1.0.69" @@ -86737,7 +86423,7 @@ in sources."tar-stream-2.2.0" sources."through-2.3.8" sources."tr46-0.0.3" - sources."typescript-5.0.4" + sources."typescript-5.1.3" sources."unbzip2-stream-1.4.3" sources."utf-8-validate-6.0.3" sources."util-deprecate-1.0.2" @@ -86770,68 +86456,68 @@ in "@microsoft/rush" = nodeEnv.buildNodePackage { name = "_at_microsoft_slash_rush"; packageName = "@microsoft/rush"; - version = "5.98.0"; + version = "5.99.0"; src = fetchurl { - url = "https://registry.npmjs.org/@microsoft/rush/-/rush-5.98.0.tgz"; - sha512 = "ENHZd0T5Ck1bYsEZ9CjSVbwca86C4tC28bC2ZET2qNaXpgupdqCQk7raVp9BASfTdtcodYEw2CJIKTKqXGuhaw=="; + url = "https://registry.npmjs.org/@microsoft/rush/-/rush-5.99.0.tgz"; + sha512 = "456hlMuqS1w5UPBC1ipwXUJhtemMxRhZT4msbR19jULZUwfjwszSNlv2GVaYj7jFweS0lYMOllsXRXEAvmJYiA=="; }; dependencies = [ (sources."@azure/abort-controller-1.1.0" // { dependencies = [ - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) (sources."@azure/core-auth-1.4.0" // { dependencies = [ - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) - (sources."@azure/core-client-1.7.2" // { + (sources."@azure/core-client-1.7.3" // { dependencies = [ - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) (sources."@azure/core-http-2.3.2" // { dependencies = [ sources."@azure/core-tracing-1.0.0-preview.13" sources."form-data-4.0.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) (sources."@azure/core-lro-2.5.3" // { dependencies = [ - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) (sources."@azure/core-paging-1.5.0" // { dependencies = [ - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) - (sources."@azure/core-rest-pipeline-1.10.3" // { + (sources."@azure/core-rest-pipeline-1.11.0" // { dependencies = [ sources."form-data-4.0.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) (sources."@azure/core-tracing-1.0.1" // { dependencies = [ - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) (sources."@azure/core-util-1.3.2" // { dependencies = [ - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) (sources."@azure/identity-2.1.0" // { dependencies = [ - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) (sources."@azure/logger-1.0.4" // { dependencies = [ - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) (sources."@azure/msal-browser-2.37.0" // { @@ -86848,7 +86534,7 @@ in (sources."@azure/storage-blob-12.11.0" // { dependencies = [ sources."@azure/core-tracing-1.0.0-preview.13" - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) sources."@babel/code-frame-7.21.4" @@ -86863,15 +86549,15 @@ in sources."@babel/parser-7.16.4" (sources."@babel/template-7.21.9" // { dependencies = [ - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" ]; }) - (sources."@babel/traverse-7.22.1" // { + (sources."@babel/traverse-7.22.4" // { dependencies = [ - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" ]; }) - sources."@babel/types-7.22.3" + sources."@babel/types-7.22.4" sources."@devexpress/error-stack-parser-2.0.6" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.0" @@ -86882,7 +86568,7 @@ in sources."@jridgewell/sourcemap-codec-1.4.14" ]; }) - sources."@microsoft/rush-lib-5.98.0" + sources."@microsoft/rush-lib-5.99.0" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" @@ -86900,25 +86586,25 @@ in }) sources."@pnpm/types-6.4.0" sources."@pnpm/write-project-manifest-1.1.7" - sources."@rushstack/heft-config-file-0.12.1" - (sources."@rushstack/node-core-library-3.59.0" // { + sources."@rushstack/heft-config-file-0.12.3" + (sources."@rushstack/node-core-library-3.59.2" // { dependencies = [ sources."import-lazy-4.0.0" ]; }) - sources."@rushstack/package-deps-hash-4.0.16" - sources."@rushstack/package-extractor-0.2.3" - (sources."@rushstack/rig-package-0.3.18" // { + sources."@rushstack/package-deps-hash-4.0.19" + sources."@rushstack/package-extractor-0.2.6" + (sources."@rushstack/rig-package-0.3.19" // { dependencies = [ sources."strip-json-comments-3.1.1" ]; }) - sources."@rushstack/rush-amazon-s3-build-cache-plugin-5.98.0" - sources."@rushstack/rush-azure-storage-build-cache-plugin-5.98.0" - sources."@rushstack/rush-sdk-5.98.0" - sources."@rushstack/stream-collator-4.0.234" - sources."@rushstack/terminal-0.5.9" - (sources."@rushstack/ts-command-line-4.13.2" // { + sources."@rushstack/rush-amazon-s3-build-cache-plugin-5.99.0" + sources."@rushstack/rush-azure-storage-build-cache-plugin-5.99.0" + sources."@rushstack/rush-sdk-5.99.0" + sources."@rushstack/stream-collator-4.0.237" + sources."@rushstack/terminal-0.5.12" + (sources."@rushstack/ts-command-line-4.13.3" // { dependencies = [ sources."argparse-1.0.10" ]; @@ -86937,19 +86623,19 @@ in sources."@types/tunnel-0.0.3" (sources."@vue/compiler-core-3.3.4" // { dependencies = [ - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" ]; }) sources."@vue/compiler-dom-3.3.4" (sources."@vue/compiler-sfc-3.3.4" // { dependencies = [ - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" ]; }) sources."@vue/compiler-ssr-3.3.4" (sources."@vue/reactivity-transform-3.3.4" // { dependencies = [ - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" ]; }) sources."@vue/shared-3.3.4" @@ -87694,10 +87380,10 @@ in "@shopify/cli" = nodeEnv.buildNodePackage { name = "_at_shopify_slash_cli"; packageName = "@shopify/cli"; - version = "3.46.1"; + version = "3.46.2"; src = fetchurl { - url = "https://registry.npmjs.org/@shopify/cli/-/cli-3.46.1.tgz"; - sha512 = "LjQDZi8pV3vuW3/IjUpRccBqhtk6lPWQNDnrivScJRoV1zdD6IBtJ3XjOoCesRqvmsn9YkyXEKHx49e9NAVavQ=="; + url = "https://registry.npmjs.org/@shopify/cli/-/cli-3.46.2.tgz"; + sha512 = "qSQmXjSAcLE1YRvGmDsDBDcdte3pLfy3lLnjdyUt07E5XVuecTLvUUl/Dd4UEoXECwHkFr2uqfbHbFidi8rkuw=="; }; dependencies = [ sources."@bugsnag/browser-7.20.2" @@ -87741,7 +87427,7 @@ in ]; }) sources."@pnpm/npm-conf-2.2.0" - (sources."@shopify/cli-kit-3.46.1" // { + (sources."@shopify/cli-kit-3.46.2" // { dependencies = [ sources."ansi-escapes-6.0.0" sources."ansi-regex-6.0.1" @@ -87753,24 +87439,24 @@ in sources."strip-ansi-7.0.1" sources."supports-color-7.2.0" sources."supports-hyperlinks-3.0.0" - sources."type-fest-3.11.0" - ]; - }) - sources."@shopify/plugin-did-you-mean-3.46.1" - sources."@sindresorhus/is-5.3.0" - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" + sources."type-fest-3.11.1" + ]; + }) + sources."@shopify/plugin-did-you-mean-3.46.2" + sources."@sindresorhus/is-5.4.0" + sources."@swc/core-1.3.61" + sources."@swc/core-darwin-arm64-1.3.61" + sources."@swc/core-darwin-x64-1.3.61" + sources."@swc/core-linux-arm-gnueabihf-1.3.61" + sources."@swc/core-linux-arm64-gnu-1.3.61" + sources."@swc/core-linux-arm64-musl-1.3.61" + sources."@swc/core-linux-x64-gnu-1.3.61" + sources."@swc/core-linux-x64-musl-1.3.61" + sources."@swc/core-win32-arm64-msvc-1.3.61" + sources."@swc/core-win32-ia32-msvc-1.3.61" + sources."@swc/core-win32-x64-msvc-1.3.61" sources."@swc/helpers-0.5.1" - sources."@swc/wasm-1.3.60" + sources."@swc/wasm-1.3.62" sources."@szmarczak/http-timer-5.0.1" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" @@ -87781,7 +87467,7 @@ in sources."@types/http-cache-semantics-4.0.1" sources."@types/node-20.2.5" sources."@types/prop-types-15.7.5" - sources."@types/react-18.2.7" + sources."@types/react-18.2.8" sources."@types/readdir-glob-1.1.1" sources."@types/scheduler-0.16.3" sources."@types/tinycolor2-1.4.3" @@ -87999,7 +87685,7 @@ in dependencies = [ (sources."ansi-escapes-6.2.0" // { dependencies = [ - sources."type-fest-3.11.0" + sources."type-fest-3.11.1" ]; }) sources."ansi-regex-6.0.1" @@ -88248,10 +87934,10 @@ in sources."tree-kill-1.2.2" sources."ts-error-1.0.6" sources."ts-node-10.9.1" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."tunnel-agent-0.6.0" sources."type-fest-0.21.3" - sources."typescript-5.0.4" + sources."typescript-5.1.3" sources."unique-string-3.0.0" sources."universalify-2.0.0" sources."upper-case-2.0.2" @@ -88363,19 +88049,19 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" + sources."@swc/core-1.3.61" + sources."@swc/core-darwin-arm64-1.3.61" + sources."@swc/core-darwin-x64-1.3.61" + sources."@swc/core-linux-arm-gnueabihf-1.3.61" + sources."@swc/core-linux-arm64-gnu-1.3.61" + sources."@swc/core-linux-arm64-musl-1.3.61" + sources."@swc/core-linux-x64-gnu-1.3.61" + sources."@swc/core-linux-x64-musl-1.3.61" + sources."@swc/core-win32-arm64-msvc-1.3.61" + sources."@swc/core-win32-ia32-msvc-1.3.61" + sources."@swc/core-win32-x64-msvc-1.3.61" sources."@swc/helpers-0.5.1" - sources."@swc/wasm-1.3.60" + sources."@swc/wasm-1.3.62" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" @@ -88468,8 +88154,8 @@ in sources."arg-4.1.3" ]; }) - sources."tslib-2.5.2" - sources."typescript-5.0.4" + sources."tslib-2.5.3" + sources."typescript-5.1.3" sources."util-deprecate-1.0.2" sources."v8-compile-cache-lib-3.0.1" sources."wrappy-1.0.2" @@ -88505,19 +88191,19 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" + sources."@swc/core-1.3.61" + sources."@swc/core-darwin-arm64-1.3.61" + sources."@swc/core-darwin-x64-1.3.61" + sources."@swc/core-linux-arm-gnueabihf-1.3.61" + sources."@swc/core-linux-arm64-gnu-1.3.61" + sources."@swc/core-linux-arm64-musl-1.3.61" + sources."@swc/core-linux-x64-gnu-1.3.61" + sources."@swc/core-linux-x64-musl-1.3.61" + sources."@swc/core-win32-arm64-msvc-1.3.61" + sources."@swc/core-win32-ia32-msvc-1.3.61" + sources."@swc/core-win32-x64-msvc-1.3.61" sources."@swc/helpers-0.5.1" - sources."@swc/wasm-1.3.60" + sources."@swc/wasm-1.3.62" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" @@ -88611,8 +88297,8 @@ in sources."arg-4.1.3" ]; }) - sources."tslib-2.5.2" - sources."typescript-5.0.4" + sources."tslib-2.5.3" + sources."typescript-5.1.3" sources."util-deprecate-1.0.2" sources."v8-compile-cache-lib-3.0.1" sources."wrappy-1.0.2" @@ -88666,19 +88352,19 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" + sources."@swc/core-1.3.61" + sources."@swc/core-darwin-arm64-1.3.61" + sources."@swc/core-darwin-x64-1.3.61" + sources."@swc/core-linux-arm-gnueabihf-1.3.61" + sources."@swc/core-linux-arm64-gnu-1.3.61" + sources."@swc/core-linux-arm64-musl-1.3.61" + sources."@swc/core-linux-x64-gnu-1.3.61" + sources."@swc/core-linux-x64-musl-1.3.61" + sources."@swc/core-win32-arm64-msvc-1.3.61" + sources."@swc/core-win32-ia32-msvc-1.3.61" + sources."@swc/core-win32-x64-msvc-1.3.61" sources."@swc/helpers-0.5.1" - sources."@swc/wasm-1.3.60" + sources."@swc/wasm-1.3.62" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" @@ -88771,8 +88457,8 @@ in sources."arg-4.1.3" ]; }) - sources."tslib-2.5.2" - sources."typescript-5.0.4" + sources."tslib-2.5.3" + sources."typescript-5.1.3" sources."util-deprecate-1.0.2" sources."v8-compile-cache-lib-3.0.1" sources."wrappy-1.0.2" @@ -88808,19 +88494,19 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" + sources."@swc/core-1.3.61" + sources."@swc/core-darwin-arm64-1.3.61" + sources."@swc/core-darwin-x64-1.3.61" + sources."@swc/core-linux-arm-gnueabihf-1.3.61" + sources."@swc/core-linux-arm64-gnu-1.3.61" + sources."@swc/core-linux-arm64-musl-1.3.61" + sources."@swc/core-linux-x64-gnu-1.3.61" + sources."@swc/core-linux-x64-musl-1.3.61" + sources."@swc/core-win32-arm64-msvc-1.3.61" + sources."@swc/core-win32-ia32-msvc-1.3.61" + sources."@swc/core-win32-x64-msvc-1.3.61" sources."@swc/helpers-0.5.1" - sources."@swc/wasm-1.3.60" + sources."@swc/wasm-1.3.62" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" @@ -88924,8 +88610,8 @@ in sources."arg-4.1.3" ]; }) - sources."tslib-2.5.2" - sources."typescript-5.0.4" + sources."tslib-2.5.3" + sources."typescript-5.1.3" sources."util-deprecate-1.0.2" sources."v8-compile-cache-lib-3.0.1" sources."wrappy-1.0.2" @@ -88971,7 +88657,7 @@ in sources."asynckit-0.4.0" sources."atob-2.1.2" sources."available-typed-arrays-1.0.5" - sources."aws-sdk-2.1386.0" + sources."aws-sdk-2.1390.0" sources."base64-js-1.5.1" (sources."basic-auth-2.0.1" // { dependencies = [ @@ -89081,7 +88767,7 @@ in sources."iconv-lite-0.4.24" sources."ieee754-1.1.13" sources."inherits-2.0.4" - sources."ipaddr.js-2.0.1" + sources."ipaddr.js-2.1.0" sources."is-arguments-1.1.1" sources."is-callable-1.2.7" sources."is-generator-function-1.0.10" @@ -89237,7 +88923,7 @@ in sha512 = "+/kSxBAkZbeVBePoG2qRSvCkVIslk1dNlU5wQHAcbzOFTi7pEQR6C+kjoj94I+vGXVGMFfDwOYm07sPsd8dM6w=="; }; dependencies = [ - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@emmetio/abbreviation-2.3.3" sources."@emmetio/css-abbreviation-2.1.8" sources."@emmetio/scanner-1.0.4" @@ -89305,16 +88991,16 @@ in sources."source-map-js-1.0.2" sources."token-stream-1.0.0" sources."typesafe-path-0.2.2" - sources."typescript-5.0.4" + sources."typescript-5.1.3" sources."typescript-auto-import-cache-0.2.1" (sources."vscode-css-languageservice-6.2.6" // { dependencies = [ sources."@vscode/l10n-0.0.14" ]; }) - (sources."vscode-html-languageservice-5.0.5" // { + (sources."vscode-html-languageservice-5.0.6" // { dependencies = [ - sources."@vscode/l10n-0.0.13" + sources."@vscode/l10n-0.0.14" ]; }) (sources."vscode-json-languageservice-5.3.5" // { @@ -89431,13 +89117,13 @@ in sources."supports-color-5.5.0" ]; }) - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.18.6" sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.22.3" sources."@babel/plugin-proposal-class-properties-7.18.6" sources."@babel/plugin-proposal-nullish-coalescing-operator-7.18.6" sources."@babel/plugin-proposal-optional-chaining-7.21.0" - sources."@babel/plugin-proposal-private-property-in-object-7.21.0" + sources."@babel/plugin-proposal-private-property-in-object-7.21.10" sources."@babel/plugin-proposal-unicode-property-regex-7.18.6" sources."@babel/plugin-syntax-async-generators-7.8.4" sources."@babel/plugin-syntax-class-properties-7.12.13" @@ -89510,7 +89196,7 @@ in sources."@babel/plugin-transform-unicode-property-regex-7.22.3" sources."@babel/plugin-transform-unicode-regex-7.18.6" sources."@babel/plugin-transform-unicode-sets-regex-7.22.3" - (sources."@babel/preset-env-7.22.2" // { + (sources."@babel/preset-env-7.22.4" // { dependencies = [ sources."semver-6.3.0" ]; @@ -89528,8 +89214,8 @@ in sources."@babel/regjsgen-0.8.0" sources."@babel/runtime-7.22.3" sources."@babel/template-7.21.9" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" sources."@graphql-tools/merge-8.3.1" (sources."@graphql-tools/mock-8.7.20" // { dependencies = [ @@ -89678,7 +89364,7 @@ in }) sources."brace-expansion-1.1.11" sources."braces-3.0.2" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."buffer-5.7.1" sources."buffer-alloc-1.2.0" sources."buffer-alloc-unsafe-1.1.0" @@ -89697,7 +89383,7 @@ in }) sources."call-bind-1.0.2" sources."camelcase-6.3.0" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."caw-2.0.1" sources."chalk-4.1.2" sources."chardet-0.7.0" @@ -89807,7 +89493,7 @@ in sources."easy-stack-1.0.1" sources."ee-first-1.1.1" sources."ejs-3.1.9" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."emoji-regex-8.0.0" sources."encodeurl-1.0.2" sources."encoding-0.1.13" @@ -90410,7 +90096,7 @@ in sources."toidentifier-1.0.1" sources."tr46-0.0.3" sources."trim-repeated-1.0.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."tunnel-agent-0.6.0" sources."type-fest-0.6.0" sources."type-is-1.6.18" @@ -90625,9 +90311,9 @@ in sources."@babel/helper-string-parser-7.21.5" sources."@babel/helper-validator-identifier-7.19.1" sources."@babel/highlight-7.18.6" - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/template-7.21.9" - sources."@babel/types-7.22.3" + sources."@babel/types-7.22.4" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.0" sources."@jridgewell/set-array-1.1.2" @@ -90713,7 +90399,7 @@ in sources."@babel/helper-validator-identifier-7.19.1" sources."@babel/highlight-7.18.6" sources."@isaacs/cliui-8.0.2" - sources."@npmcli/config-6.1.7" + sources."@npmcli/config-6.2.0" (sources."@npmcli/map-workspaces-3.0.4" // { dependencies = [ sources."glob-10.2.6" @@ -90729,7 +90415,7 @@ in ]; }) sources."@pnpm/npm-conf-2.2.0" - sources."@sindresorhus/is-5.3.0" + sources."@sindresorhus/is-5.4.0" sources."@szmarczak/http-timer-5.0.1" sources."@types/acorn-4.0.6" sources."@types/concat-stream-2.0.0" @@ -90933,7 +90619,7 @@ in sources."escape-string-regexp-5.0.0" ]; }) - sources."mdast-util-from-markdown-1.3.0" + sources."mdast-util-from-markdown-1.3.1" sources."mdast-util-frontmatter-1.0.1" sources."mdast-util-gfm-2.0.2" sources."mdast-util-gfm-autolink-literal-1.0.3" @@ -90950,42 +90636,42 @@ in sources."mdast-util-to-nlcst-5.2.1" sources."mdast-util-to-string-3.2.0" sources."meow-11.0.0" - sources."micromark-3.1.0" - sources."micromark-core-commonmark-1.0.6" - sources."micromark-extension-frontmatter-1.1.0" + sources."micromark-3.2.0" + sources."micromark-core-commonmark-1.1.0" + sources."micromark-extension-frontmatter-1.1.1" sources."micromark-extension-gfm-2.0.3" - sources."micromark-extension-gfm-autolink-literal-1.0.4" - sources."micromark-extension-gfm-footnote-1.1.0" - sources."micromark-extension-gfm-strikethrough-1.0.5" - sources."micromark-extension-gfm-table-1.0.6" + sources."micromark-extension-gfm-autolink-literal-1.0.5" + sources."micromark-extension-gfm-footnote-1.1.2" + sources."micromark-extension-gfm-strikethrough-1.0.7" + sources."micromark-extension-gfm-table-1.0.7" sources."micromark-extension-gfm-tagfilter-1.0.2" - sources."micromark-extension-gfm-task-list-item-1.0.4" - sources."micromark-extension-mdx-expression-1.0.5" - sources."micromark-extension-mdx-jsx-1.0.4" + sources."micromark-extension-gfm-task-list-item-1.0.5" + sources."micromark-extension-mdx-expression-1.0.8" + sources."micromark-extension-mdx-jsx-1.0.5" sources."micromark-extension-mdx-md-1.0.1" sources."micromark-extension-mdxjs-1.0.1" - sources."micromark-extension-mdxjs-esm-1.0.4" - sources."micromark-factory-destination-1.0.0" - sources."micromark-factory-label-1.0.2" - sources."micromark-factory-mdx-expression-1.0.8" - sources."micromark-factory-space-1.0.0" - sources."micromark-factory-title-1.0.2" - sources."micromark-factory-whitespace-1.0.0" - sources."micromark-util-character-1.1.0" - sources."micromark-util-chunked-1.0.0" - sources."micromark-util-classify-character-1.0.0" - sources."micromark-util-combine-extensions-1.0.0" - sources."micromark-util-decode-numeric-character-reference-1.0.0" - sources."micromark-util-decode-string-1.0.2" - sources."micromark-util-encode-1.0.1" + sources."micromark-extension-mdxjs-esm-1.0.5" + sources."micromark-factory-destination-1.1.0" + sources."micromark-factory-label-1.1.0" + sources."micromark-factory-mdx-expression-1.0.9" + sources."micromark-factory-space-1.1.0" + sources."micromark-factory-title-1.1.0" + sources."micromark-factory-whitespace-1.1.0" + sources."micromark-util-character-1.2.0" + sources."micromark-util-chunked-1.1.0" + sources."micromark-util-classify-character-1.1.0" + sources."micromark-util-combine-extensions-1.1.0" + sources."micromark-util-decode-numeric-character-reference-1.1.0" + sources."micromark-util-decode-string-1.1.0" + sources."micromark-util-encode-1.1.0" sources."micromark-util-events-to-acorn-1.2.3" - sources."micromark-util-html-tag-name-1.1.0" - sources."micromark-util-normalize-identifier-1.0.0" - sources."micromark-util-resolve-all-1.0.0" - sources."micromark-util-sanitize-uri-1.1.0" - sources."micromark-util-subtokenize-1.0.2" - sources."micromark-util-symbol-1.0.1" - sources."micromark-util-types-1.0.2" + sources."micromark-util-html-tag-name-1.2.0" + sources."micromark-util-normalize-identifier-1.1.0" + sources."micromark-util-resolve-all-1.1.0" + sources."micromark-util-sanitize-uri-1.2.0" + sources."micromark-util-subtokenize-1.1.0" + sources."micromark-util-symbol-1.1.0" + sources."micromark-util-types-1.1.0" sources."mimic-response-4.0.0" sources."min-indent-1.0.1" sources."minimatch-5.1.6" @@ -91026,7 +90712,7 @@ in sources."path-key-3.1.1" (sources."path-scurry-1.9.2" // { dependencies = [ - sources."lru-cache-9.1.1" + sources."lru-cache-9.1.2" ]; }) sources."pause-stream-0.0.11" @@ -91139,7 +90825,7 @@ in sources."to-vfile-7.2.4" sources."trim-newlines-4.1.1" sources."trough-2.1.0" - sources."type-fest-3.11.0" + sources."type-fest-3.11.1" sources."typedarray-0.0.6" sources."typedarray-to-buffer-3.1.5" sources."unherit-3.0.1" @@ -91266,10 +90952,10 @@ in sources."@babel/helper-validator-option-7.21.0" sources."@babel/helpers-7.22.3" sources."@babel/highlight-7.18.6" - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/template-7.21.9" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.0" sources."@jridgewell/set-array-1.1.2" @@ -91279,15 +90965,15 @@ in sources."@jridgewell/sourcemap-codec-1.4.14" ]; }) - sources."@xmldom/xmldom-0.8.7" + sources."@xmldom/xmldom-0.8.8" sources."JSV-4.0.2" sources."ansi-styles-3.2.1" sources."array-unique-0.3.2" sources."async-3.2.4" sources."balanced-match-1.0.2" sources."brace-expansion-2.0.1" - sources."browserslist-4.21.6" - sources."caniuse-lite-1.0.30001489" + sources."browserslist-4.21.7" + sources."caniuse-lite-1.0.30001492" sources."chalk-2.4.2" sources."color-convert-1.9.3" sources."color-name-1.1.3" @@ -91297,7 +90983,7 @@ in sources."convert-source-map-1.9.0" sources."debug-4.3.4" sources."ejs-3.1.6" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."ensure-posix-path-1.1.1" sources."escalade-3.1.1" sources."escape-string-regexp-1.0.5" @@ -91684,9 +91370,9 @@ in sha512 = "FQzyfOsTlwVzjHxKEqRIAdJx9niO6VCBCoEwax/VLSoQF29ggECcPuBqUMZ+u8jCZOPSy8b8/8KnuFbp0SaFZQ=="; }; dependencies = [ - sources."browserslist-4.21.6" - sources."caniuse-lite-1.0.30001489" - sources."electron-to-chromium-1.4.411" + sources."browserslist-4.21.7" + sources."caniuse-lite-1.0.30001492" + sources."electron-to-chromium-1.4.419" sources."escalade-3.1.1" sources."fraction.js-4.2.0" sources."nanoid-3.3.6" @@ -91766,7 +91452,7 @@ in sources."ansi-styles-4.3.0" sources."ast-types-0.13.4" sources."available-typed-arrays-1.0.5" - (sources."aws-sdk-2.1386.0" // { + (sources."aws-sdk-2.1390.0" // { dependencies = [ sources."uuid-8.0.0" ]; @@ -91948,7 +91634,7 @@ in sources."tmp-0.0.33" sources."toidentifier-1.0.1" sources."tr46-0.0.3" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."type-check-0.3.2" sources."type-fest-0.21.3" (sources."unbzip2-stream-1.4.3" // { @@ -91991,10 +91677,10 @@ in aws-cdk = nodeEnv.buildNodePackage { name = "aws-cdk"; packageName = "aws-cdk"; - version = "2.81.0"; + version = "2.82.0"; src = fetchurl { - url = "https://registry.npmjs.org/aws-cdk/-/aws-cdk-2.81.0.tgz"; - sha512 = "EEwacXaauxHmVBLQzbFDOcjJOAZw57vzUQDJ7eDl3MIDSrKG2dZ1XYHVuMbSloqJpgDW6xZ9vAZ45rXTTjdSzw=="; + url = "https://registry.npmjs.org/aws-cdk/-/aws-cdk-2.82.0.tgz"; + sha512 = "4uAhKN8HMdxxM10Th8aMQJLSINO6evYV9UKTPL0hbVQ6dh6+i5LbSejcvDRw0HfBoP6qV1LNV8P8XGLYIC3tyQ=="; }; dependencies = [ sources."fsevents-2.3.2" @@ -92430,10 +92116,10 @@ in balanceofsatoshis = nodeEnv.buildNodePackage { name = "balanceofsatoshis"; packageName = "balanceofsatoshis"; - version = "15.8.6"; + version = "15.8.8"; src = fetchurl { - url = "https://registry.npmjs.org/balanceofsatoshis/-/balanceofsatoshis-15.8.6.tgz"; - sha512 = "4dTMDO4kWziIJ5169KWkOEsB9JiJhaBcoug8dPFjlHnodsFiwXKJ1j2OSyI/T/IF28V+a3eCrt8JyjMLE2kBWw=="; + url = "https://registry.npmjs.org/balanceofsatoshis/-/balanceofsatoshis-15.8.8.tgz"; + sha512 = "xblNHBHv4TvLxscRTjr10dkLEFZgzumCFBeeiSzFpFG0np/TKGxFsXF5EoZvuw59ObxApSMr+FcdWfOYUcl+YA=="; }; dependencies = [ sources."@alexbosworth/blockchain-1.4.0" @@ -93012,7 +92698,7 @@ in sources."tr46-0.0.3" sources."triple-beam-1.3.0" sources."truncate-utf8-bytes-1.0.2" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."tweetnacl-1.0.3" sources."tweetnacl-util-0.15.1" sources."type-fest-3.6.1" @@ -93363,7 +93049,7 @@ in sources."dash-ast-1.0.0" sources."defined-1.0.1" sources."deps-sort-2.0.1" - sources."des.js-1.0.1" + sources."des.js-1.1.0" sources."detective-5.2.1" (sources."diffie-hellman-5.0.3" // { dependencies = [ @@ -93670,10 +93356,10 @@ in sources."serve-static-1.13.2" sources."server-destroy-1.0.1" sources."setprototypeof-1.2.0" - sources."socket.io-4.6.1" + sources."socket.io-4.6.2" sources."socket.io-adapter-2.5.2" - sources."socket.io-client-4.6.1" - sources."socket.io-parser-4.2.3" + sources."socket.io-client-4.6.2" + sources."socket.io-parser-4.2.4" sources."statuses-1.3.1" sources."stream-throttle-0.1.3" sources."string-width-4.2.3" @@ -93722,8 +93408,8 @@ in sources."@babel/helper-string-parser-7.21.5" sources."@babel/helper-validator-identifier-7.19.1" sources."@babel/highlight-7.18.6" - sources."@babel/parser-7.22.3" - sources."@babel/types-7.22.3" + sources."@babel/parser-7.22.4" + sources."@babel/types-7.22.4" sources."@kwsites/file-exists-1.1.1" sources."@kwsites/promise-deferred-1.1.1" sources."@popperjs/core-2.11.8" @@ -93772,7 +93458,7 @@ in sources."debug-2.6.9" ]; }) - sources."bootstrap-5.2.3" + sources."bootstrap-5.3.0" sources."brace-expansion-1.1.11" sources."brorand-1.1.0" sources."bs58-4.0.1" @@ -94333,7 +94019,7 @@ in sources."internal-ip-1.2.0" sources."ip-1.1.8" sources."ip-set-1.0.2" - sources."ipaddr.js-2.0.1" + sources."ipaddr.js-2.1.0" sources."is-arrayish-0.2.1" sources."is-core-module-2.12.1" sources."is-finite-1.1.0" @@ -94661,7 +94347,7 @@ in ]; }) sources."@pnpm/npm-conf-2.2.0" - sources."@sindresorhus/is-5.3.0" + sources."@sindresorhus/is-5.4.0" sources."@szmarczak/http-timer-5.0.1" sources."@types/http-cache-semantics-4.0.1" sources."@types/minimist-1.2.2" @@ -94735,7 +94421,7 @@ in ]; }) sources."cli-width-2.2.1" - sources."clipboard-sys-1.2.0" + sources."clipboard-sys-1.2.1" (sources."clipboardy-2.3.0" // { dependencies = [ sources."cross-spawn-6.0.5" @@ -95231,10 +94917,10 @@ in cdk8s-cli = nodeEnv.buildNodePackage { name = "cdk8s-cli"; packageName = "cdk8s-cli"; - version = "2.2.45"; + version = "2.2.50"; src = fetchurl { - url = "https://registry.npmjs.org/cdk8s-cli/-/cdk8s-cli-2.2.45.tgz"; - sha512 = "D7t+MvDkkhN2Hs/tvtM66Jrn74zxZrxojFiy56J9+pKCC0n7f6Ly13cEf81jHs+B++itQ01J2mh4V5sjLuPxoA=="; + url = "https://registry.npmjs.org/cdk8s-cli/-/cdk8s-cli-2.2.50.tgz"; + sha512 = "gfTsqNTE0sAzcUaFq/jvPjmv1jSP78Z6C51s7po9inspGpLs1Fc0HpAABNh3qT/6eOFBxeYPCWWtBMvO/aC91A=="; }; dependencies = [ sources."@colors/colors-1.5.0" @@ -95258,7 +94944,7 @@ in sources."@octokit/types-6.41.0" sources."@types/node-16.18.34" sources."@types/triple-beam-1.3.2" - sources."@xmldom/xmldom-0.8.7" + sources."@xmldom/xmldom-0.8.8" sources."aggregate-error-3.1.0" sources."ajv-8.12.0" sources."ansi-escapes-4.3.2" @@ -95290,8 +94976,8 @@ in sources."buffer-5.7.1" sources."camelcase-6.3.0" sources."case-1.6.3" - sources."cdk8s-2.7.75" - sources."cdk8s-plus-25-2.8.4" + sources."cdk8s-2.7.77" + sources."cdk8s-plus-25-2.8.10" sources."chalk-4.1.2" sources."chardet-0.7.0" sources."clean-stack-2.2.0" @@ -95319,7 +95005,7 @@ in sources."combined-stream-1.0.8" sources."commonmark-0.30.0" sources."concat-map-0.0.1" - sources."constructs-10.2.35" + sources."constructs-10.2.41" sources."date-format-4.0.14" sources."debug-4.3.4" sources."decamelize-5.0.1" @@ -95336,10 +95022,10 @@ in sources."detect-newline-2.1.0" sources."dir-glob-3.0.1" sources."dot-case-3.0.4" - sources."dotenv-16.0.3" + sources."dotenv-16.1.3" (sources."downlevel-dts-0.11.0" // { dependencies = [ - sources."typescript-5.2.0-dev.20230528" + sources."typescript-5.2.0-dev.20230603" ]; }) sources."emoji-regex-8.0.0" @@ -95428,12 +95114,11 @@ in sources."yargs-16.2.0" ]; }) - (sources."jsii-srcmak-0.1.909" // { + (sources."jsii-srcmak-0.1.913" // { dependencies = [ - sources."@jsii/check-node-1.81.0" sources."cliui-8.0.1" sources."fs-extra-9.1.0" - (sources."jsii-5.0.9" // { + (sources."jsii-5.0.10" // { dependencies = [ sources."yargs-17.7.2" ]; @@ -95444,7 +95129,7 @@ in }) sources."json-schema-0.4.0" sources."json-schema-traverse-1.0.0" - sources."json2jsii-0.3.346" + sources."json2jsii-0.3.353" sources."jsonfile-6.1.0" sources."kuler-2.0.0" sources."locate-path-5.0.0" @@ -95525,7 +95210,7 @@ in sources."sscaff-1.2.274" sources."stack-trace-0.0.10" sources."stream-chain-2.2.5" - sources."stream-json-1.7.5" + sources."stream-json-1.8.0" sources."streamroller-3.1.5" sources."string-width-4.2.3" sources."string.prototype.repeat-0.2.0" @@ -95543,7 +95228,7 @@ in sources."to-regex-range-5.0.1" sources."tr46-0.0.3" sources."triple-beam-1.3.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."type-fest-0.21.3" sources."typescript-3.9.10" sources."universal-user-agent-6.0.0" @@ -95590,67 +95275,33 @@ in cdktf-cli = nodeEnv.buildNodePackage { name = "cdktf-cli"; packageName = "cdktf-cli"; - version = "0.16.1"; + version = "0.16.3"; src = fetchurl { - url = "https://registry.npmjs.org/cdktf-cli/-/cdktf-cli-0.16.1.tgz"; - sha512 = "acsVTjRM/ECQBkntkcgDTs7tOLOvFmr/UeuIkQ3pmPnTck6FkFkpgRGuAmUl9kLXB2SsaAmQDjDMohP7vcYrNA=="; + url = "https://registry.npmjs.org/cdktf-cli/-/cdktf-cli-0.16.3.tgz"; + sha512 = "VX0AQO89n06L2GOjxKX98Awzcak2NF0t9bCk7ITXwRcf5Rhq9wedcuu0rlRMO6MiBlYvbz+fjSAuQUGfVhj6BQ=="; }; dependencies = [ - sources."@ampproject/remapping-2.2.1" sources."@babel/code-frame-7.21.4" - sources."@babel/compat-data-7.22.3" - (sources."@babel/core-7.22.1" // { - dependencies = [ - sources."semver-6.3.0" - ]; - }) sources."@babel/generator-7.22.3" - (sources."@babel/helper-compilation-targets-7.22.1" // { - dependencies = [ - sources."lru-cache-5.1.1" - sources."semver-6.3.0" - sources."yallist-3.1.1" - ]; - }) - sources."@babel/helper-environment-visitor-7.22.1" - sources."@babel/helper-function-name-7.21.0" - sources."@babel/helper-hoist-variables-7.18.6" - sources."@babel/helper-module-imports-7.21.4" - sources."@babel/helper-module-transforms-7.22.1" - sources."@babel/helper-plugin-utils-7.21.5" - sources."@babel/helper-simple-access-7.21.5" - sources."@babel/helper-split-export-declaration-7.18.6" sources."@babel/helper-string-parser-7.21.5" sources."@babel/helper-validator-identifier-7.19.1" - sources."@babel/helper-validator-option-7.21.0" - sources."@babel/helpers-7.22.3" (sources."@babel/highlight-7.18.6" // { dependencies = [ + sources."ansi-styles-3.2.1" sources."chalk-2.4.2" + sources."color-convert-1.9.3" + sources."color-name-1.1.3" + sources."escape-string-regexp-1.0.5" + sources."has-flag-3.0.0" + sources."supports-color-5.5.0" ]; }) - sources."@babel/parser-7.22.3" - sources."@babel/plugin-syntax-async-generators-7.8.4" - sources."@babel/plugin-syntax-bigint-7.8.3" - sources."@babel/plugin-syntax-class-properties-7.12.13" - sources."@babel/plugin-syntax-import-meta-7.10.4" - sources."@babel/plugin-syntax-json-strings-7.8.3" - sources."@babel/plugin-syntax-jsx-7.21.4" - sources."@babel/plugin-syntax-logical-assignment-operators-7.10.4" - sources."@babel/plugin-syntax-nullish-coalescing-operator-7.8.3" - sources."@babel/plugin-syntax-numeric-separator-7.10.4" - sources."@babel/plugin-syntax-object-rest-spread-7.8.3" - sources."@babel/plugin-syntax-optional-catch-binding-7.8.3" - sources."@babel/plugin-syntax-optional-chaining-7.8.3" - sources."@babel/plugin-syntax-top-level-await-7.14.5" - sources."@babel/plugin-syntax-typescript-7.21.4" + sources."@babel/parser-7.22.4" sources."@babel/template-7.21.9" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" - sources."@bcoe/v8-coverage-0.2.3" - sources."@cdktf/cli-core-0.16.1" - sources."@cdktf/commons-0.16.1" - (sources."@cdktf/hcl2cdk-0.16.1" // { + sources."@babel/types-7.22.4" + sources."@cdktf/cli-core-0.16.3" + sources."@cdktf/commons-0.16.3" + (sources."@cdktf/hcl2cdk-0.16.3" // { dependencies = [ sources."brace-expansion-2.0.1" sources."camelcase-6.3.0" @@ -95659,7 +95310,7 @@ in sources."zod-3.21.4" ]; }) - (sources."@cdktf/hcl2json-0.16.1" // { + (sources."@cdktf/hcl2json-0.16.3" // { dependencies = [ sources."fs-extra-11.1.1" sources."jsonfile-6.1.0" @@ -95667,42 +95318,21 @@ in ]; }) sources."@cdktf/node-pty-prebuilt-multiarch-0.10.1-pre.10" - (sources."@cdktf/provider-generator-0.16.1" // { + (sources."@cdktf/provider-generator-0.16.3" // { dependencies = [ sources."@types/node-16.18.23" ]; }) - (sources."@cspotcode/source-map-support-0.8.1" // { - dependencies = [ - sources."@jridgewell/trace-mapping-0.3.9" - ]; - }) - sources."@istanbuljs/load-nyc-config-1.1.0" - sources."@istanbuljs/schema-0.1.3" - sources."@jest/console-29.5.0" - sources."@jest/core-29.5.0" - sources."@jest/environment-29.5.0" - sources."@jest/expect-29.5.0" - sources."@jest/expect-utils-29.5.0" - sources."@jest/fake-timers-29.5.0" - sources."@jest/globals-29.5.0" - sources."@jest/reporters-29.5.0" - sources."@jest/schemas-29.4.3" - sources."@jest/source-map-29.4.3" - sources."@jest/test-result-29.5.0" - sources."@jest/test-sequencer-29.5.0" - (sources."@jest/transform-29.5.0" // { - dependencies = [ - sources."convert-source-map-2.0.0" - ]; - }) - sources."@jest/types-29.5.0" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.0" sources."@jridgewell/set-array-1.1.2" - sources."@jridgewell/sourcemap-codec-1.4.14" - sources."@jridgewell/trace-mapping-0.3.18" - sources."@jsii/check-node-1.81.0" + sources."@jridgewell/sourcemap-codec-1.4.15" + (sources."@jridgewell/trace-mapping-0.3.18" // { + dependencies = [ + sources."@jridgewell/sourcemap-codec-1.4.14" + ]; + }) + sources."@jsii/check-node-1.82.0" sources."@jsii/spec-1.82.0" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" @@ -95734,101 +95364,68 @@ in sources."tslib-1.14.1" ]; }) - sources."@sinclair/typebox-0.25.24" - sources."@sinonjs/commons-3.0.0" - sources."@sinonjs/fake-timers-10.2.0" - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" - sources."@swc/helpers-0.5.1" - sources."@swc/wasm-1.3.60" - sources."@tsconfig/node10-1.0.9" - sources."@tsconfig/node12-1.0.11" - sources."@tsconfig/node14-1.0.3" - sources."@tsconfig/node16-1.0.4" - sources."@types/babel__core-7.20.1" - sources."@types/babel__generator-7.6.4" - sources."@types/babel__template-7.4.1" - sources."@types/babel__traverse-7.20.0" - sources."@types/graceful-fs-4.1.6" - sources."@types/istanbul-lib-coverage-2.0.4" - sources."@types/istanbul-lib-report-3.0.0" - sources."@types/istanbul-reports-3.0.1" sources."@types/node-20.2.5" - sources."@types/prettier-2.7.2" sources."@types/prop-types-15.7.5" - sources."@types/react-18.2.7" + sources."@types/react-18.2.8" sources."@types/scheduler-0.16.3" - sources."@types/stack-utils-2.0.1" - sources."@types/yargs-17.0.24" - sources."@types/yargs-parser-21.0.0" + sources."@types/yauzl-2.10.0" sources."@types/yoga-layout-1.9.2" - sources."@xmldom/xmldom-0.8.7" - sources."acorn-8.8.2" - sources."acorn-walk-8.2.0" + sources."@xmldom/xmldom-0.8.8" + sources."address-1.2.2" sources."agent-base-6.0.2" sources."ajv-8.12.0" - sources."ansi-escapes-4.3.2" + (sources."ansi-escapes-4.3.2" // { + dependencies = [ + sources."type-fest-0.21.3" + ]; + }) sources."ansi-regex-5.0.1" - sources."ansi-styles-3.2.1" + sources."ansi-styles-4.3.0" sources."anymatch-3.1.3" - sources."arg-4.1.3" - sources."argparse-1.0.10" + sources."archiver-5.3.1" + (sources."archiver-utils-2.1.0" // { + dependencies = [ + sources."readable-stream-2.3.8" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) sources."arr-rotate-1.0.0" sources."array-buffer-byte-length-1.0.0" sources."astral-regex-2.0.0" + sources."async-3.2.4" sources."at-least-node-1.0.0" sources."auto-bind-4.0.0" sources."available-typed-arrays-1.0.5" - sources."babel-jest-29.5.0" - sources."babel-plugin-istanbul-6.1.1" - sources."babel-plugin-jest-hoist-29.5.0" - sources."babel-preset-current-node-syntax-1.0.1" - sources."babel-preset-jest-29.5.0" sources."balanced-match-1.0.2" sources."base64-js-1.5.1" + sources."binary-extensions-2.2.0" sources."bl-4.1.0" sources."brace-expansion-1.1.11" sources."braces-3.0.2" - sources."browserslist-4.21.6" - sources."bs-logger-0.2.6" - sources."bser-2.1.1" sources."buffer-5.7.1" - sources."buffer-from-1.1.2" + sources."buffer-crc32-0.2.13" sources."bufferutil-4.0.7" sources."call-bind-1.0.2" - sources."callsites-3.1.0" sources."camelcase-5.3.1" - sources."caniuse-lite-1.0.30001489" sources."case-1.6.3" - sources."cdktf-0.16.1" - (sources."chalk-4.1.2" // { - dependencies = [ - sources."ansi-styles-4.3.0" - sources."color-convert-2.0.1" - sources."color-name-1.1.4" - sources."has-flag-4.0.0" - sources."supports-color-7.2.0" - ]; - }) - sources."char-regex-1.0.2" + sources."cdktf-0.16.3" + sources."chalk-4.1.2" + sources."chardet-0.7.0" + sources."chokidar-3.5.3" sources."chownr-1.1.4" - sources."ci-info-3.8.0" - sources."cjs-module-lexer-1.2.2" + sources."ci-info-2.0.0" sources."cli-boxes-2.2.1" sources."cli-cursor-3.1.0" + sources."cli-spinners-2.7.0" sources."cli-truncate-2.1.0" - sources."cliui-6.0.0" - sources."clone-2.1.2" - sources."co-4.6.0" + sources."cli-width-3.0.0" + (sources."cliui-8.0.1" // { + dependencies = [ + sources."wrap-ansi-7.0.0" + ]; + }) + sources."clone-1.0.4" sources."code-excerpt-3.0.0" (sources."codemaker-1.82.0" // { dependencies = [ @@ -95839,59 +95436,75 @@ in sources."universalify-2.0.0" ]; }) - sources."collect-v8-coverage-1.0.1" - sources."color-convert-1.9.3" - sources."color-name-1.1.3" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" sources."commonmark-0.30.0" + sources."compress-commons-4.1.1" sources."concat-map-0.0.1" - sources."constructs-10.2.35" - sources."convert-source-map-1.9.0" + sources."constructs-10.2.41" sources."convert-to-spaces-1.0.2" sources."cookie-0.4.2" - sources."create-require-1.1.1" + sources."core-util-is-1.0.3" + sources."crc-32-1.2.2" + sources."crc32-stream-4.0.2" + sources."cross-fetch-3.1.6" sources."cross-spawn-7.0.3" sources."csstype-3.1.2" sources."date-format-4.0.14" sources."debug-4.3.4" sources."decamelize-1.2.0" sources."decompress-response-6.0.0" - sources."dedent-0.7.0" - sources."deep-equal-2.2.1" + (sources."deep-equal-2.2.1" // { + dependencies = [ + sources."isarray-2.0.5" + ]; + }) sources."deep-extend-0.6.0" sources."deepmerge-4.3.1" + sources."defaults-1.0.4" sources."define-properties-1.2.0" sources."detect-indent-5.0.0" sources."detect-libc-2.0.1" - sources."detect-newline-3.1.0" - sources."diff-4.0.2" - sources."diff-sequences-29.4.3" + sources."detect-newline-2.1.0" + sources."detect-port-1.5.1" (sources."downlevel-dts-0.11.0" // { dependencies = [ - sources."typescript-5.2.0-dev.20230528" + sources."typescript-5.2.0-dev.20230603" ]; }) - sources."electron-to-chromium-1.4.411" - sources."emittery-0.13.1" sources."emoji-regex-8.0.0" - sources."encoding-0.1.13" + (sources."encoding-0.1.13" // { + dependencies = [ + sources."iconv-lite-0.6.3" + ]; + }) sources."end-of-stream-1.4.4" sources."entities-2.0.3" - sources."error-ex-1.3.2" - sources."es-get-iterator-1.1.3" + (sources."es-get-iterator-1.1.3" // { + dependencies = [ + sources."isarray-2.0.5" + ]; + }) sources."escalade-3.1.1" - sources."escape-string-regexp-1.0.5" - sources."esprima-4.0.1" + sources."escape-string-regexp-2.0.0" sources."events-3.3.0" sources."execa-5.1.1" - sources."exit-0.1.2" sources."expand-template-2.0.3" - sources."expect-29.5.0" + sources."external-editor-3.1.0" + (sources."extract-zip-2.0.1" // { + dependencies = [ + sources."get-stream-5.2.0" + ]; + }) sources."fast-deep-equal-3.1.3" sources."fast-glob-3.2.12" - sources."fast-json-stable-stringify-2.1.0" sources."fastq-1.15.0" - sources."fb-watchman-2.0.2" - sources."figures-3.2.0" + sources."fd-slicer-1.1.0" + (sources."figures-3.2.0" // { + dependencies = [ + sources."escape-string-regexp-1.0.5" + ]; + }) sources."fill-range-7.0.1" sources."find-up-4.1.0" sources."flatted-3.2.7" @@ -95903,10 +95516,8 @@ in sources."fsevents-2.3.2" sources."function-bind-1.1.1" sources."functions-have-names-1.2.3" - sources."gensync-1.0.0-beta.2" sources."get-caller-file-2.0.5" sources."get-intrinsic-1.2.1" - sources."get-package-type-0.1.0" sources."get-stream-6.0.1" sources."github-from-package-0.0.0" (sources."glob-7.2.3" // { @@ -95915,57 +95526,56 @@ in ]; }) sources."glob-parent-5.1.2" - sources."globals-11.12.0" sources."gopd-1.0.1" sources."graceful-fs-4.2.11" sources."graphology-0.25.1" sources."graphology-types-0.24.7" - sources."growly-1.3.0" sources."has-1.0.3" sources."has-bigints-1.0.2" - sources."has-flag-3.0.0" + sources."has-flag-4.0.0" sources."has-property-descriptors-1.0.0" sources."has-proto-1.0.1" sources."has-symbols-1.0.3" sources."has-tostringtag-1.0.0" - sources."html-escaper-2.0.2" sources."https-proxy-agent-5.0.1" sources."human-signals-2.1.0" - sources."iconv-lite-0.6.3" + sources."iconv-lite-0.4.24" sources."ieee754-1.2.1" - sources."import-local-3.1.0" - sources."imurmurhash-0.1.4" sources."indent-string-4.0.0" sources."inflight-1.0.6" sources."inherits-2.0.4" sources."ini-1.3.8" - (sources."ink-3.2.0" // { + sources."ink-3.2.0" + (sources."ink-select-input-4.2.2" // { dependencies = [ - sources."type-fest-0.12.0" + sources."react-17.0.2" ]; }) - sources."ink-select-input-4.2.2" + sources."ink-spinner-4.0.3" sources."ink-table-3.0.0" + sources."ink-testing-library-2.1.0" + sources."ink-use-stdout-dimensions-1.0.5" + (sources."inquirer-8.2.5" // { + dependencies = [ + sources."wrap-ansi-7.0.0" + ]; + }) sources."internal-slot-1.0.5" sources."interpret-1.4.0" sources."is-arguments-1.1.1" sources."is-array-buffer-3.0.2" - sources."is-arrayish-0.2.1" sources."is-bigint-1.0.4" + sources."is-binary-path-2.1.0" sources."is-boolean-object-1.1.2" sources."is-callable-1.2.7" - (sources."is-ci-2.0.0" // { - dependencies = [ - sources."ci-info-2.0.0" - ]; - }) + sources."is-ci-2.0.0" sources."is-core-module-2.12.1" sources."is-date-object-1.0.5" sources."is-docker-2.2.1" sources."is-extglob-2.1.1" sources."is-fullwidth-code-point-3.0.0" - sources."is-generator-fn-2.1.0" sources."is-glob-4.0.3" + sources."is-interactive-1.0.0" sources."is-map-2.0.2" sources."is-number-7.0.0" sources."is-number-object-1.0.7" @@ -95976,88 +95586,24 @@ in sources."is-string-1.0.7" sources."is-symbol-1.0.4" sources."is-typed-array-1.1.10" + sources."is-unicode-supported-0.1.0" sources."is-valid-domain-0.1.6" sources."is-weakmap-2.0.1" sources."is-weakset-2.0.2" sources."is-wsl-2.2.0" - sources."isarray-2.0.5" + sources."isarray-1.0.0" sources."isexe-2.0.0" - sources."istanbul-lib-coverage-3.2.0" - (sources."istanbul-lib-instrument-5.2.1" // { - dependencies = [ - sources."semver-6.3.0" - ]; - }) - (sources."istanbul-lib-report-3.0.0" // { - dependencies = [ - sources."has-flag-4.0.0" - sources."supports-color-7.2.0" - ]; - }) - sources."istanbul-lib-source-maps-4.0.1" - sources."istanbul-reports-3.1.5" - sources."jest-29.5.0" - (sources."jest-changed-files-29.5.0" // { - dependencies = [ - sources."p-limit-3.1.0" - ]; - }) - (sources."jest-circus-29.5.0" // { - dependencies = [ - sources."p-limit-3.1.0" - ]; - }) - sources."jest-cli-29.5.0" - (sources."jest-config-29.5.0" // { - dependencies = [ - sources."strip-json-comments-3.1.1" - ]; - }) - sources."jest-diff-29.5.0" - sources."jest-docblock-29.4.3" - sources."jest-each-29.5.0" - sources."jest-environment-node-29.5.0" - sources."jest-get-type-29.4.3" - sources."jest-haste-map-29.5.0" - sources."jest-leak-detector-29.5.0" - sources."jest-matcher-utils-29.5.0" - sources."jest-message-util-29.5.0" - sources."jest-mock-29.5.0" - sources."jest-pnp-resolver-1.2.3" - sources."jest-regex-util-29.4.3" - sources."jest-resolve-29.5.0" - sources."jest-resolve-dependencies-29.5.0" - (sources."jest-runner-29.5.0" // { - dependencies = [ - sources."p-limit-3.1.0" - ]; - }) - sources."jest-runtime-29.5.0" - sources."jest-snapshot-29.5.0" - sources."jest-util-29.5.0" - (sources."jest-validate-29.5.0" // { - dependencies = [ - sources."camelcase-6.3.0" - ]; - }) - sources."jest-watcher-29.5.0" - (sources."jest-worker-29.5.0" // { + sources."js-tokens-4.0.0" + sources."jsesc-2.5.2" + (sources."jsii-5.1.0" // { dependencies = [ - sources."has-flag-4.0.0" - sources."supports-color-8.1.1" + sources."typescript-5.1.3" ]; }) - sources."js-tokens-4.0.0" - sources."js-yaml-3.14.1" - sources."jsesc-2.5.2" - sources."jsii-5.0.9" (sources."jsii-pacmak-1.82.0" // { dependencies = [ - sources."@jsii/check-node-1.82.0" - sources."ansi-styles-4.3.0" sources."cliui-7.0.4" - sources."color-convert-2.0.1" - sources."color-name-1.1.4" + sources."clone-2.1.2" sources."escape-string-regexp-4.0.0" sources."fs-extra-10.1.0" sources."jsii-1.82.0" @@ -96066,59 +95612,67 @@ in sources."typescript-3.9.10" sources."universalify-2.0.0" sources."wrap-ansi-7.0.0" - sources."y18n-5.0.8" sources."yargs-16.2.0" sources."yargs-parser-20.2.9" ]; }) (sources."jsii-reflect-1.82.0" // { dependencies = [ - sources."@jsii/check-node-1.82.0" - sources."ansi-styles-4.3.0" sources."cliui-7.0.4" - sources."color-convert-2.0.1" - sources."color-name-1.1.4" sources."fs-extra-10.1.0" sources."jsonfile-6.1.0" sources."universalify-2.0.0" sources."wrap-ansi-7.0.0" - sources."y18n-5.0.8" sources."yargs-16.2.0" sources."yargs-parser-20.2.9" ]; }) - sources."jsii-rosetta-5.0.9" - (sources."jsii-srcmak-0.1.909" // { + (sources."jsii-rosetta-5.0.10" // { + dependencies = [ + sources."jsii-5.0.10" + ]; + }) + (sources."jsii-srcmak-0.1.913" // { dependencies = [ sources."fs-extra-9.1.0" + (sources."jsii-5.0.10" // { + dependencies = [ + sources."yargs-17.7.2" + ]; + }) sources."jsonfile-6.1.0" sources."universalify-2.0.0" - sources."yargs-15.4.1" - sources."yargs-parser-18.1.3" + (sources."yargs-15.4.1" // { + dependencies = [ + sources."cliui-6.0.0" + sources."y18n-4.0.3" + sources."yargs-parser-18.1.3" + ]; + }) ]; }) - sources."json-parse-even-better-errors-2.3.1" sources."json-schema-traverse-1.0.0" - sources."json5-2.2.3" sources."jsonfile-4.0.0" - sources."kleur-3.0.3" - sources."leven-3.1.0" - sources."lines-and-columns-1.2.4" + (sources."lazystream-1.0.1" // { + dependencies = [ + sources."readable-stream-2.3.8" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) sources."locate-path-5.0.0" sources."lodash-4.17.21" + sources."lodash.defaults-4.2.0" + sources."lodash.difference-4.5.0" + sources."lodash.flatten-4.4.0" sources."lodash.isequal-4.5.0" - sources."lodash.memoize-4.1.2" + sources."lodash.isplainobject-4.0.6" + sources."lodash.union-4.6.0" + sources."log-symbols-4.1.0" sources."log4js-6.9.1" sources."loose-envify-1.4.0" sources."lru-cache-6.0.0" sources."lru_map-0.3.3" - (sources."make-dir-3.1.0" // { - dependencies = [ - sources."semver-6.3.0" - ]; - }) - sources."make-error-1.3.6" - sources."makeerror-1.0.12" sources."mdurl-1.0.1" sources."merge-stream-2.0.0" sources."merge2-1.4.1" @@ -96134,16 +95688,13 @@ in sources."minipass-4.2.8" sources."mkdirp-classic-0.5.3" sources."ms-2.1.2" + sources."mute-stream-0.0.8" sources."nan-2.17.0" sources."napi-build-utils-1.0.2" - sources."natural-compare-1.4.0" sources."ncp-2.0.0" - sources."node-abi-3.40.0" + sources."node-abi-3.43.0" sources."node-fetch-2.6.11" sources."node-gyp-build-4.6.0" - sources."node-int64-0.4.0" - sources."node-notifier-10.0.1" - sources."node-releases-2.0.12" sources."normalize-path-3.0.0" sources."npm-run-path-4.0.1" sources."object-assign-4.1.1" @@ -96156,10 +95707,13 @@ in sources."once-1.4.0" sources."onetime-5.1.2" sources."oo-ascii-tree-1.82.0" + sources."open-7.4.2" + sources."ora-5.4.1" + sources."os-tmpdir-1.0.2" sources."p-limit-2.3.0" sources."p-locate-4.1.0" sources."p-try-2.2.0" - sources."parse-json-5.2.0" + sources."parse-gitignore-1.0.1" sources."patch-console-1.0.0" sources."path-exists-4.0.0" sources."path-is-absolute-1.0.1" @@ -96167,32 +95721,37 @@ in sources."path-parse-1.0.7" (sources."path-scurry-1.9.2" // { dependencies = [ - sources."lru-cache-9.1.1" + sources."lru-cache-9.1.2" sources."minipass-6.0.2" ]; }) - sources."picocolors-1.0.0" + sources."pend-1.2.0" sources."picomatch-2.3.1" - sources."pirates-4.0.5" - sources."pkg-dir-4.2.0" - sources."prebuild-install-7.1.1" - sources."prettier-2.8.8" - (sources."pretty-format-29.5.0" // { + (sources."pkg-up-3.1.0" // { dependencies = [ - sources."ansi-styles-5.2.0" + sources."find-up-3.0.0" + sources."locate-path-3.0.0" + sources."p-locate-3.0.0" + sources."path-exists-3.0.0" ]; }) - sources."prompts-2.4.2" + sources."prebuild-install-7.1.1" + sources."prettier-2.8.8" + sources."process-nextick-args-2.0.1" sources."pump-3.0.0" sources."punycode-2.3.0" - sources."pure-rand-6.0.2" sources."queue-microtask-1.2.3" sources."rc-1.2.8" - sources."react-17.0.2" + sources."react-18.2.0" sources."react-devtools-core-4.27.8" - sources."react-is-18.2.0" - sources."react-reconciler-0.26.2" + (sources."react-reconciler-0.26.2" // { + dependencies = [ + sources."react-17.0.2" + ]; + }) sources."readable-stream-3.6.2" + sources."readdir-glob-1.1.3" + sources."readdirp-3.6.0" sources."rechoir-0.6.2" sources."regexp.prototype.flags-1.5.0" sources."require-directory-2.1.1" @@ -96200,13 +95759,12 @@ in sources."require-main-filename-2.0.0" sources."reserved-words-0.1.2" sources."resolve-1.22.3" - sources."resolve-cwd-3.0.0" - sources."resolve-from-5.0.0" - sources."resolve.exports-2.0.2" sources."restore-cursor-3.1.0" sources."reusify-1.0.4" sources."rfdc-1.3.0" + sources."run-async-2.4.1" sources."run-parallel-1.2.0" + sources."rxjs-7.8.1" sources."safe-buffer-5.2.1" sources."safer-buffer-2.1.2" sources."sax-1.2.4" @@ -96222,75 +95780,45 @@ in sources."shebang-regex-3.0.0" sources."shell-quote-1.8.1" sources."shelljs-0.8.5" - sources."shellwords-0.1.1" sources."side-channel-1.0.4" sources."signal-exit-3.0.7" sources."simple-concat-1.0.1" sources."simple-get-4.0.1" - sources."sisteransi-1.0.5" - sources."slash-3.0.0" - (sources."slice-ansi-3.0.0" // { - dependencies = [ - sources."ansi-styles-4.3.0" - sources."color-convert-2.0.1" - sources."color-name-1.1.4" - ]; - }) - (sources."sort-json-2.0.1" // { - dependencies = [ - sources."detect-newline-2.1.0" - ]; - }) - sources."source-map-0.6.1" - sources."source-map-support-0.5.13" + sources."slice-ansi-3.0.0" + sources."sort-json-2.0.1" sources."spdx-license-list-6.6.0" - sources."sprintf-js-1.0.3" - (sources."stack-utils-2.0.6" // { - dependencies = [ - sources."escape-string-regexp-2.0.0" - ]; - }) + sources."sscaff-1.2.274" + sources."stack-utils-2.0.6" sources."stop-iteration-iterator-1.0.0" + sources."stream-buffers-3.0.2" sources."stream-chain-2.2.5" - sources."stream-json-1.7.5" + sources."stream-json-1.8.0" sources."streamroller-3.1.5" - sources."string-length-4.0.2" sources."string-width-4.2.3" sources."string.prototype.repeat-0.2.0" sources."string_decoder-1.3.0" sources."strip-ansi-6.0.1" - sources."strip-bom-4.0.0" sources."strip-final-newline-2.0.0" sources."strip-json-comments-2.0.1" - sources."supports-color-5.5.0" + sources."supports-color-7.2.0" sources."supports-preserve-symlinks-flag-1.0.0" sources."tar-fs-2.1.1" sources."tar-stream-2.2.0" - (sources."test-exclude-6.0.0" // { - dependencies = [ - sources."minimatch-3.1.2" - ]; - }) - sources."tmpl-1.0.5" + sources."through-2.3.8" + sources."tmp-0.0.33" sources."to-fast-properties-2.0.0" sources."to-regex-range-5.0.1" sources."tr46-0.0.3" - sources."ts-jest-29.1.0" - sources."ts-node-10.9.1" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."tunnel-agent-0.6.0" - sources."type-detect-4.0.8" - sources."type-fest-0.21.3" + sources."type-fest-0.12.0" sources."typescript-5.0.4" sources."universalify-0.1.2" - sources."update-browserslist-db-1.0.11" sources."uri-js-4.4.1" sources."utf-8-validate-5.0.10" sources."util-deprecate-1.0.2" sources."uuid-8.3.2" - sources."v8-compile-cache-lib-3.0.1" - sources."v8-to-istanbul-9.1.0" - sources."walker-1.0.8" + sources."wcwidth-1.0.1" sources."webidl-conversions-3.0.1" sources."whatwg-url-5.0.0" sources."which-2.0.2" @@ -96300,35 +95828,19 @@ in sources."which-typed-array-1.1.9" sources."widest-line-3.1.0" sources."workerpool-6.4.0" - (sources."wrap-ansi-6.2.0" // { - dependencies = [ - sources."ansi-styles-4.3.0" - sources."color-convert-2.0.1" - sources."color-name-1.1.4" - ]; - }) + sources."wrap-ansi-6.2.0" sources."wrappy-1.0.2" - sources."write-file-atomic-4.0.2" sources."ws-7.5.9" sources."xml-js-1.6.11" sources."xmlbuilder-15.1.1" sources."xstate-4.37.2" - sources."y18n-4.0.3" + sources."y18n-5.0.8" sources."yallist-4.0.0" - (sources."yargs-17.7.2" // { - dependencies = [ - sources."ansi-styles-4.3.0" - sources."cliui-8.0.1" - sources."color-convert-2.0.1" - sources."color-name-1.1.4" - sources."wrap-ansi-7.0.0" - sources."y18n-5.0.8" - ]; - }) + sources."yargs-17.7.2" sources."yargs-parser-21.1.1" - sources."yn-3.1.1" - sources."yocto-queue-0.1.0" + sources."yauzl-2.10.0" sources."yoga-layout-prebuilt-1.10.0" + sources."zip-stream-4.1.0" sources."zod-1.11.17" ]; buildInputs = globalBuildInputs; @@ -96646,7 +96158,7 @@ in sources."dockerfile-language-server-nodejs-0.9.0" sources."dockerfile-language-service-0.9.0" sources."dockerfile-utils-0.10.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."vscode-jsonrpc-8.1.0" sources."vscode-languageserver-8.1.0" (sources."vscode-languageserver-protocol-3.17.3" // { @@ -96835,7 +96347,7 @@ in }; dependencies = [ sources."isexe-2.0.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."vscode-languageserver-textdocument-1.0.10" sources."vscode-uri-3.0.7" sources."which-3.0.1" @@ -97242,7 +96754,7 @@ in sources."tar-6.1.15" sources."tr46-0.0.3" sources."traverse-0.3.9" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."typed-array-length-1.0.4" sources."unbox-primitive-1.0.2" sources."universalify-0.1.2" @@ -97317,13 +96829,13 @@ in coc-pyright = nodeEnv.buildNodePackage { name = "coc-pyright"; packageName = "coc-pyright"; - version = "1.1.307"; + version = "1.1.310"; src = fetchurl { - url = "https://registry.npmjs.org/coc-pyright/-/coc-pyright-1.1.307.tgz"; - sha512 = "hmR9GVaQfQklEn2/uifLa1PS+kCtavmbihYEdTnJm1jcEjSAuFhrQV3grLMSM8HfTOFy4JeQrQPMq2LcugJRWw=="; + url = "https://registry.npmjs.org/coc-pyright/-/coc-pyright-1.1.310.tgz"; + sha512 = "cFSqDbDktHM5EdRQv8gZlLaWigp4o8Rqe3nMhgO83fDCJF+N27WejGAFp/VEjgmSzf6CFJ1qq4uQEYFstfc56w=="; }; dependencies = [ - sources."pyright-1.1.310" + sources."pyright-1.1.311" ]; buildInputs = globalBuildInputs; meta = { @@ -97447,7 +96959,7 @@ in sources."safer-buffer-2.1.2" sources."to-regex-range-5.0.1" sources."tr46-0.0.3" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."turndown-7.1.2" sources."vscode-jsonrpc-8.0.2" sources."vscode-languageserver-8.0.2" @@ -97687,10 +97199,10 @@ in sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/template-7.21.9" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.0" sources."@jridgewell/set-array-1.1.2" @@ -97729,11 +97241,11 @@ in ]; }) sources."braces-3.0.2" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."callsites-3.1.0" sources."camelcase-5.3.1" sources."camelcase-keys-6.2.2" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" (sources."chalk-4.1.2" // { dependencies = [ sources."ansi-styles-4.3.0" @@ -97770,7 +97282,7 @@ in sources."domelementtype-1.3.1" sources."domhandler-2.4.2" sources."domutils-1.7.0" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."emoji-regex-8.0.0" sources."entities-1.1.2" sources."error-ex-1.3.2" @@ -98785,10 +98297,10 @@ in concurrently = nodeEnv.buildNodePackage { name = "concurrently"; packageName = "concurrently"; - version = "8.0.1"; + version = "8.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/concurrently/-/concurrently-8.0.1.tgz"; - sha512 = "Sh8bGQMEL0TAmAm2meAXMjcASHZa7V0xXQVDBLknCPa9TPtkY9yYs+0cnGGgfdkW0SV1Mlg+hVGfXcoI8d3MJA=="; + url = "https://registry.npmjs.org/concurrently/-/concurrently-8.1.0.tgz"; + sha512 = "0AB6eOAtaW/r/kX2lCdolaWtT191ICeuJjEJvI9hT3zbPFuZ/iZaJwMRKwbuwADome7OKxk73L7od+fsveZ7tA=="; }; dependencies = [ sources."@babel/runtime-7.22.3" @@ -98818,7 +98330,7 @@ in sources."strip-ansi-6.0.1" sources."supports-color-8.1.1" sources."tree-kill-1.2.2" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."wrap-ansi-7.0.0" sources."y18n-5.0.8" sources."yargs-17.7.2" @@ -99504,7 +99016,7 @@ in sources."lodash.isobject-3.0.2" sources."lodash.zip-4.2.0" sources."loud-rejection-2.2.0" - sources."lru-cache-9.1.1" + sources."lru-cache-9.1.2" sources."macos-release-2.5.1" (sources."make-dir-3.1.0" // { dependencies = [ @@ -99676,7 +99188,7 @@ in sources."read-2.1.0" sources."read-chunk-3.2.0" sources."read-cmd-shim-4.0.0" - (sources."read-package-json-6.0.3" // { + (sources."read-package-json-6.0.4" // { dependencies = [ sources."brace-expansion-2.0.1" sources."glob-10.2.6" @@ -99775,7 +99287,7 @@ in sources."strip-final-newline-2.0.0" sources."supports-color-7.2.0" sources."supports-preserve-symlinks-flag-1.0.0" - sources."systeminformation-5.17.13" + sources."systeminformation-5.17.16" (sources."tar-6.1.15" // { dependencies = [ sources."minipass-5.0.0" @@ -100260,10 +99772,10 @@ in create-react-native-app = nodeEnv.buildNodePackage { name = "create-react-native-app"; packageName = "create-react-native-app"; - version = "3.8.0"; + version = "3.9.0"; src = fetchurl { - url = "https://registry.npmjs.org/create-react-native-app/-/create-react-native-app-3.8.0.tgz"; - sha512 = "IAdWaSnaOof44HvsLInWVpzSdaaBchn54HtXICRBPXIA18NllLC4G+pckKKC+ONF2/TOlsS99CYhcL7k7PYL6w=="; + url = "https://registry.npmjs.org/create-react-native-app/-/create-react-native-app-3.9.0.tgz"; + sha512 = "Fm0fg2/CZje18+yjNVw5DFKT7uv2qKfv6+YVUxsUcwSLF+WghozghCZN1ATzYIyp/Z73AnEgmJX0V04hvUtYrA=="; }; buildInputs = globalBuildInputs; meta = { @@ -100303,7 +99815,7 @@ in sources."@cspell/dict-ada-4.0.1" sources."@cspell/dict-aws-3.0.0" sources."@cspell/dict-bash-4.1.1" - sources."@cspell/dict-companies-3.0.12" + sources."@cspell/dict-companies-3.0.13" sources."@cspell/dict-cpp-5.0.3" sources."@cspell/dict-cryptocurrencies-3.0.1" sources."@cspell/dict-csharp-4.0.2" @@ -100340,7 +99852,7 @@ in sources."@cspell/dict-ruby-5.0.0" sources."@cspell/dict-rust-4.0.1" sources."@cspell/dict-scala-5.0.0" - sources."@cspell/dict-software-terms-3.1.10" + sources."@cspell/dict-software-terms-3.1.11" sources."@cspell/dict-sql-2.1.0" sources."@cspell/dict-svelte-1.0.2" sources."@cspell/dict-swift-2.0.1" @@ -101328,19 +100840,15 @@ in dockerfile-language-server-nodejs = nodeEnv.buildNodePackage { name = "dockerfile-language-server-nodejs"; packageName = "dockerfile-language-server-nodejs"; - version = "0.10.0"; + version = "0.10.2"; src = fetchurl { - url = "https://registry.npmjs.org/dockerfile-language-server-nodejs/-/dockerfile-language-server-nodejs-0.10.0.tgz"; - sha512 = "PlEXMna7q8DorZxKTLnzbYl0SidbppXeeuA0l4xDLO5UdimPIgXCQghcLBbBM97fduxQmzbRsH9Z+C68AZf5SA=="; + url = "https://registry.npmjs.org/dockerfile-language-server-nodejs/-/dockerfile-language-server-nodejs-0.10.2.tgz"; + sha512 = "vLbaeYv4h3XEzrZ9JOhP6bD1eLzbzGzFFF03F3Ofd6kh9PU2aGBS/LVjd/w1omCyNV2LHviFX0ZGHINmWsZYyw=="; }; dependencies = [ - sources."dockerfile-ast-0.4.2" - sources."dockerfile-language-service-0.10.0" - (sources."dockerfile-utils-0.11.0" // { - dependencies = [ - sources."dockerfile-ast-0.5.0" - ]; - }) + sources."dockerfile-ast-0.5.0" + sources."dockerfile-language-service-0.10.2" + sources."dockerfile-utils-0.11.0" sources."vscode-jsonrpc-8.1.0" sources."vscode-languageserver-8.1.0" (sources."vscode-languageserver-protocol-3.17.3" // { @@ -101364,10 +100872,10 @@ in dotenv-vault = nodeEnv.buildNodePackage { name = "dotenv-vault"; packageName = "dotenv-vault"; - version = "1.22.0"; + version = "1.23.3"; src = fetchurl { - url = "https://registry.npmjs.org/dotenv-vault/-/dotenv-vault-1.22.0.tgz"; - sha512 = "gu0OS15r3hYVqC8mmM0jXbTvi6GRb5W3q29fCIB1LIIYuLFol0xMBE7MRK4BExXKDq9SHhu3bj2/Bim2bN4U3Q=="; + url = "https://registry.npmjs.org/dotenv-vault/-/dotenv-vault-1.23.3.tgz"; + sha512 = "hH6eUtj0I8DFEa8GwktLfxtuCXkJgLjEvSCfBF/6SFBAdGNRO6QszQOUcHiS8kUi5Ew1n2/xsgmZZDAjhWyO8w=="; }; dependencies = [ sources."@cspotcode/source-map-support-0.8.1" @@ -101406,19 +100914,19 @@ in ]; }) sources."@oclif/screen-3.0.4" - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" + sources."@swc/core-1.3.61" + sources."@swc/core-darwin-arm64-1.3.61" + sources."@swc/core-darwin-x64-1.3.61" + sources."@swc/core-linux-arm-gnueabihf-1.3.61" + sources."@swc/core-linux-arm64-gnu-1.3.61" + sources."@swc/core-linux-arm64-musl-1.3.61" + sources."@swc/core-linux-x64-gnu-1.3.61" + sources."@swc/core-linux-x64-musl-1.3.61" + sources."@swc/core-win32-arm64-msvc-1.3.61" + sources."@swc/core-win32-ia32-msvc-1.3.61" + sources."@swc/core-win32-x64-msvc-1.3.61" sources."@swc/helpers-0.5.1" - sources."@swc/wasm-1.3.60" + sources."@swc/wasm-1.3.62" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" @@ -101475,8 +100983,7 @@ in sources."delayed-stream-1.0.0" sources."diff-4.0.2" sources."dir-glob-3.0.1" - sources."dotenv-16.0.3" - sources."dotenv-vault-core-0.7.0" + sources."dotenv-16.1.3" sources."ejs-3.1.9" sources."emoji-regex-8.0.0" sources."end-of-stream-1.4.4" @@ -101600,10 +101107,10 @@ in sources."tmp-0.0.33" sources."to-regex-range-5.0.1" sources."ts-node-10.9.1" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."tunnel-agent-0.6.0" sources."type-fest-0.21.3" - sources."typescript-5.0.4" + sources."typescript-5.1.3" sources."universalify-2.0.0" sources."util-deprecate-1.0.2" sources."v8-compile-cache-lib-3.0.1" @@ -101629,10 +101136,10 @@ in elasticdump = nodeEnv.buildNodePackage { name = "elasticdump"; packageName = "elasticdump"; - version = "6.101.0"; + version = "6.103.0"; src = fetchurl { - url = "https://registry.npmjs.org/elasticdump/-/elasticdump-6.101.0.tgz"; - sha512 = "N+Bh+9hWF2Mx62DxatmYGRPSpqzm2mXy3ZhKFCB2s07q16cwzZv9ffpbWTgmDpzQN4AaOfJhk0PVrS3ob6B+jw=="; + url = "https://registry.npmjs.org/elasticdump/-/elasticdump-6.103.0.tgz"; + sha512 = "sBTxGvlI3/u49Sv83RRe/NSijctT6SiCuoqed5sKfCYsM1DnlOi8QT3Kjg4igc4J+L3Vp0kQ+8aPEXhrLBL31w=="; }; dependencies = [ sources."@fast-csv/format-4.3.5" @@ -102093,7 +101600,7 @@ in sources."ms-2.1.3" sources."negotiator-0.6.3" sources."nice-try-1.0.5" - sources."node-abi-3.40.0" + sources."node-abi-3.43.0" sources."node-api-version-0.1.4" sources."node-fetch-2.6.11" sources."node-gyp-9.3.1" @@ -102217,7 +101724,7 @@ in sources."to-regex-range-5.0.1" sources."tr46-0.0.3" sources."trim-repeated-1.0.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."type-fest-0.13.1" sources."unique-filename-2.0.1" sources."unique-slug-3.0.0" @@ -102405,7 +101912,7 @@ in sources."@sideway/pinpoint-2.0.0" sources."@urql/core-3.1.1" sources."@urql/exchange-retry-1.0.0" - sources."@xmldom/xmldom-0.7.10" + sources."@xmldom/xmldom-0.7.11" sources."agent-base-6.0.2" sources."ajv-8.11.0" sources."ajv-formats-2.1.1" @@ -102895,7 +102402,7 @@ in sources."@babel/helper-validator-option-7.21.0" sources."@babel/helpers-7.22.3" sources."@babel/highlight-7.18.6" - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/plugin-proposal-object-rest-spread-7.20.7" sources."@babel/plugin-syntax-jsx-7.21.4" sources."@babel/plugin-syntax-object-rest-spread-7.8.3" @@ -102903,8 +102410,8 @@ in sources."@babel/plugin-transform-parameters-7.22.3" sources."@babel/plugin-transform-react-jsx-7.22.3" sources."@babel/template-7.21.9" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.0" sources."@jridgewell/set-array-1.1.2" @@ -102917,7 +102424,7 @@ in sources."@types/minimist-1.2.2" sources."@types/normalize-package-data-2.4.1" sources."@types/prop-types-15.7.5" - sources."@types/react-18.2.7" + sources."@types/react-18.2.8" sources."@types/scheduler-0.16.3" sources."@types/yoga-layout-1.9.2" sources."ajv-6.12.6" @@ -102935,14 +102442,14 @@ in sources."auto-bind-4.0.0" sources."balanced-match-1.0.2" sources."brace-expansion-1.1.11" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."bufferutil-4.0.7" sources."caller-callsite-4.1.0" sources."caller-path-3.0.1" sources."callsites-3.1.0" sources."camelcase-5.3.1" sources."camelcase-keys-6.2.2" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."chalk-2.4.2" sources."ci-info-2.0.0" sources."cli-boxes-2.2.1" @@ -102972,7 +102479,7 @@ in ]; }) sources."dot-prop-5.3.0" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."emoji-regex-8.0.0" sources."emojilib-2.4.0" sources."end-of-stream-1.4.4" @@ -103224,17 +102731,17 @@ in eslint = nodeEnv.buildNodePackage { name = "eslint"; packageName = "eslint"; - version = "8.41.0"; + version = "8.42.0"; src = fetchurl { - url = "https://registry.npmjs.org/eslint/-/eslint-8.41.0.tgz"; - sha512 = "WQDQpzGBOP5IrXPo4Hc0814r4/v2rrIsB0rhT7jtunIalgg6gYXWhRMOejVO8yH21T/FGaxjmFjBMNqcIlmH1Q=="; + url = "https://registry.npmjs.org/eslint/-/eslint-8.42.0.tgz"; + sha512 = "ulg9Ms6E1WPf67PHaEY4/6E2tEn5/f7FXGzr3t9cBMugOmf1INYvuUwwh1aXQN4MfJ6a5K2iNwP3w4AColvI9A=="; }; dependencies = [ sources."@eslint-community/eslint-utils-4.4.0" sources."@eslint-community/regexpp-4.5.1" sources."@eslint/eslintrc-2.0.3" - sources."@eslint/js-8.41.0" - sources."@humanwhocodes/config-array-0.11.8" + sources."@eslint/js-8.42.0" + sources."@humanwhocodes/config-array-0.11.10" sources."@humanwhocodes/module-importer-1.0.1" sources."@humanwhocodes/object-schema-1.2.1" sources."@nodelib/fs.scandir-2.1.5" @@ -103258,7 +102765,7 @@ in sources."deep-is-0.1.4" sources."doctrine-3.0.0" sources."escape-string-regexp-4.0.0" - sources."eslint-8.41.0" + sources."eslint-8.42.0" sources."eslint-scope-7.2.0" sources."eslint-visitor-keys-3.4.1" sources."espree-9.5.2" @@ -103337,128 +102844,6 @@ in bypassCache = true; reconstructLock = true; }; - eslint_d = nodeEnv.buildNodePackage { - name = "eslint_d"; - packageName = "eslint_d"; - version = "12.2.1"; - src = fetchurl { - url = "https://registry.npmjs.org/eslint_d/-/eslint_d-12.2.1.tgz"; - sha512 = "qOJ9cTi5AaH5bOgEoCkv41DJ637mHgzffbOLojwU4wadwC6qbR+OxVJRvVzH0v2XYmQOvw4eiJK7ivrr5SvzsA=="; - }; - dependencies = [ - sources."@eslint-community/eslint-utils-4.4.0" - sources."@eslint-community/regexpp-4.5.1" - sources."@eslint/eslintrc-2.0.3" - sources."@eslint/js-8.41.0" - sources."@humanwhocodes/config-array-0.11.8" - sources."@humanwhocodes/module-importer-1.0.1" - sources."@humanwhocodes/object-schema-1.2.1" - sources."@nodelib/fs.scandir-2.1.5" - sources."@nodelib/fs.stat-2.0.5" - sources."@nodelib/fs.walk-1.2.8" - sources."acorn-8.8.2" - sources."acorn-jsx-5.3.2" - sources."ajv-6.12.6" - sources."ansi-regex-5.0.1" - sources."ansi-styles-4.3.0" - sources."argparse-2.0.1" - sources."balanced-match-1.0.2" - sources."brace-expansion-1.1.11" - sources."callsites-3.1.0" - (sources."chalk-4.1.2" // { - dependencies = [ - sources."supports-color-7.2.0" - ]; - }) - sources."color-convert-2.0.1" - sources."color-name-1.1.4" - sources."concat-map-0.0.1" - sources."core_d-5.0.1" - sources."cross-spawn-7.0.3" - sources."debug-4.3.4" - sources."deep-is-0.1.4" - sources."doctrine-3.0.0" - sources."escape-string-regexp-4.0.0" - sources."eslint-8.41.0" - sources."eslint-scope-7.2.0" - sources."eslint-visitor-keys-3.4.1" - sources."espree-9.5.2" - sources."esquery-1.5.0" - sources."esrecurse-4.3.0" - sources."estraverse-5.3.0" - sources."esutils-2.0.3" - sources."fast-deep-equal-3.1.3" - sources."fast-json-stable-stringify-2.1.0" - sources."fast-levenshtein-2.0.6" - sources."fastq-1.15.0" - sources."file-entry-cache-6.0.1" - sources."find-up-5.0.0" - sources."flat-cache-3.0.4" - sources."flatted-3.2.7" - sources."fs.realpath-1.0.0" - sources."glob-7.2.3" - sources."glob-parent-6.0.2" - sources."globals-13.20.0" - sources."graphemer-1.4.0" - sources."has-flag-4.0.0" - sources."ignore-5.2.4" - sources."import-fresh-3.3.0" - sources."imurmurhash-0.1.4" - sources."inflight-1.0.6" - sources."inherits-2.0.4" - sources."is-extglob-2.1.1" - sources."is-glob-4.0.3" - sources."is-path-inside-3.0.3" - sources."isexe-2.0.0" - sources."js-yaml-4.1.0" - sources."json-schema-traverse-0.4.1" - sources."json-stable-stringify-without-jsonify-1.0.1" - sources."levn-0.4.1" - sources."locate-path-6.0.0" - sources."lodash.merge-4.6.2" - sources."minimatch-3.1.2" - sources."ms-2.1.2" - sources."nanolru-1.0.0" - sources."natural-compare-1.4.0" - sources."once-1.4.0" - sources."optionator-0.9.1" - sources."p-limit-3.1.0" - sources."p-locate-5.0.0" - sources."parent-module-1.0.1" - sources."path-exists-4.0.0" - sources."path-is-absolute-1.0.1" - sources."path-key-3.1.1" - sources."prelude-ls-1.2.1" - sources."punycode-2.3.0" - sources."queue-microtask-1.2.3" - sources."resolve-from-4.0.0" - sources."reusify-1.0.4" - sources."rimraf-3.0.2" - sources."run-parallel-1.2.0" - sources."shebang-command-2.0.0" - sources."shebang-regex-3.0.0" - sources."strip-ansi-6.0.1" - sources."strip-json-comments-3.1.1" - sources."supports-color-8.1.1" - sources."text-table-0.2.0" - sources."type-check-0.4.0" - sources."type-fest-0.20.2" - sources."uri-js-4.4.1" - sources."which-2.0.2" - sources."word-wrap-1.2.3" - sources."wrappy-1.0.2" - sources."yocto-queue-0.1.0" - ]; - buildInputs = globalBuildInputs; - meta = { - description = "Makes eslint the fastest linter on the planet"; - homepage = "https://github.com/mantoni/eslint_d.js"; - license = "MIT"; - }; - production = true; - bypassCache = true; - reconstructLock = true; - }; esy = nodeEnv.buildNodePackage { name = "esy"; packageName = "esy"; @@ -103479,10 +102864,10 @@ in expo-cli = nodeEnv.buildNodePackage { name = "expo-cli"; packageName = "expo-cli"; - version = "6.3.7"; + version = "6.3.8"; src = fetchurl { - url = "https://registry.npmjs.org/expo-cli/-/expo-cli-6.3.7.tgz"; - sha512 = "ZnNKoNY7BpJA6HS6Ykj9yOxFddeS2xGhfv6w3MDDwPCSZyX5I6b7NxWWORSG7KZhKPQ6v5ZeTCr052IdhDY8FQ=="; + url = "https://registry.npmjs.org/expo-cli/-/expo-cli-6.3.8.tgz"; + sha512 = "kfgvqXaqD0jWN4Ab4pRVpt7RAky/76pXugi/XGGs6aQ8nFIgSWHPw2TYW5gz8hvCaCFV9xt5yd86/ulUXhk3Mg=="; }; dependencies = [ sources."@ampproject/remapping-2.2.1" @@ -103543,7 +102928,7 @@ in sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.18.6" sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.22.3" sources."@babel/plugin-proposal-async-generator-functions-7.20.7" @@ -103554,7 +102939,7 @@ in sources."@babel/plugin-proposal-object-rest-spread-7.20.7" sources."@babel/plugin-proposal-optional-catch-binding-7.18.6" sources."@babel/plugin-proposal-optional-chaining-7.21.0" - sources."@babel/plugin-proposal-private-property-in-object-7.21.0" + sources."@babel/plugin-proposal-private-property-in-object-7.21.10" sources."@babel/plugin-proposal-unicode-property-regex-7.18.6" sources."@babel/plugin-syntax-async-generators-7.8.4" sources."@babel/plugin-syntax-class-properties-7.12.13" @@ -103623,7 +103008,7 @@ in sources."@babel/plugin-transform-react-jsx-source-7.19.6" sources."@babel/plugin-transform-regenerator-7.21.5" sources."@babel/plugin-transform-reserved-words-7.18.6" - (sources."@babel/plugin-transform-runtime-7.22.2" // { + (sources."@babel/plugin-transform-runtime-7.22.4" // { dependencies = [ sources."semver-6.3.0" ]; @@ -103638,7 +103023,7 @@ in sources."@babel/plugin-transform-unicode-property-regex-7.22.3" sources."@babel/plugin-transform-unicode-regex-7.18.6" sources."@babel/plugin-transform-unicode-sets-regex-7.22.3" - (sources."@babel/preset-env-7.22.2" // { + (sources."@babel/preset-env-7.22.4" // { dependencies = [ sources."semver-6.3.0" ]; @@ -103651,16 +103036,16 @@ in sources."@babel/code-frame-7.21.4" ]; }) - (sources."@babel/traverse-7.22.1" // { + (sources."@babel/traverse-7.22.4" // { dependencies = [ sources."@babel/code-frame-7.21.4" ]; }) - sources."@babel/types-7.22.3" + sources."@babel/types-7.22.4" sources."@colors/colors-1.5.0" sources."@expo/apple-utils-1.0.0" sources."@expo/bunyan-4.0.0" - (sources."@expo/cli-0.7.1" // { + (sources."@expo/cli-0.7.3" // { dependencies = [ sources."@babel/runtime-7.22.3" (sources."@expo/config-8.0.4" // { @@ -103793,19 +103178,7 @@ in sources."@expo/sdk-runtime-versions-1.0.0" sources."@expo/spawn-async-1.5.0" sources."@expo/vector-icons-13.0.0" - (sources."@expo/webpack-config-18.0.4" // { - dependencies = [ - sources."@expo/config-6.0.20" - (sources."@expo/config-plugins-4.1.1" // { - dependencies = [ - sources."semver-7.5.1" - ]; - }) - sources."@expo/config-types-44.0.0" - sources."@expo/json-file-8.2.35" - sources."@expo/plist-0.0.18" - ]; - }) + sources."@expo/webpack-config-18.1.0" (sources."@expo/xcpretty-4.2.2" // { dependencies = [ sources."js-yaml-4.1.0" @@ -103899,7 +103272,7 @@ in sources."@webassemblyjs/wasm-opt-1.11.6" sources."@webassemblyjs/wasm-parser-1.11.6" sources."@webassemblyjs/wast-printer-1.11.6" - sources."@xmldom/xmldom-0.7.10" + sources."@xmldom/xmldom-0.7.11" sources."@xtuc/ieee754-1.2.0" sources."@xtuc/long-4.2.2" sources."abab-2.0.6" @@ -103979,7 +103352,7 @@ in sources."bplist-parser-0.2.0" sources."brace-expansion-1.1.11" sources."braces-3.0.2" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."buffer-alloc-1.2.0" sources."buffer-alloc-unsafe-1.1.0" sources."buffer-fill-1.0.0" @@ -104000,7 +103373,7 @@ in sources."camel-case-4.1.2" sources."camelcase-6.3.0" sources."caniuse-api-3.0.0" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" (sources."chalk-4.1.2" // { dependencies = [ sources."ansi-styles-4.3.0" @@ -104142,7 +103515,7 @@ in sources."dot-case-3.0.4" sources."duplexer3-0.1.5" sources."ee-first-1.1.1" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."emoji-regex-8.0.0" sources."emojis-list-3.0.0" sources."encodeurl-1.0.2" @@ -104179,7 +103552,7 @@ in sources."is-stream-1.1.0" ]; }) - (sources."expo-48.0.17" // { + (sources."expo-48.0.19" // { dependencies = [ sources."@babel/runtime-7.22.3" (sources."@expo/config-8.0.2" // { @@ -104231,7 +103604,7 @@ in ]; }) sources."expo-modules-core-1.2.7" - (sources."expo-pwa-0.0.124" // { + (sources."expo-pwa-0.0.125" // { dependencies = [ sources."@expo/image-utils-0.3.23" sources."commander-2.20.0" @@ -104268,7 +103641,7 @@ in sources."fastq-1.15.0" sources."faye-websocket-0.11.4" sources."fbemitter-3.0.0" - sources."fbjs-3.0.4" + sources."fbjs-3.0.5" sources."fbjs-css-vars-1.0.2" sources."fetch-retry-4.1.1" sources."fill-range-7.0.1" @@ -104301,7 +103674,7 @@ in ]; }) sources."fs-minipass-2.1.0" - sources."fs-monkey-1.0.3" + sources."fs-monkey-1.0.4" sources."fs.realpath-1.0.0" sources."fsevents-2.3.2" sources."function-bind-1.1.1" @@ -104477,7 +103850,7 @@ in sources."md5hex-1.0.0" sources."mdn-data-2.0.14" sources."media-typer-0.3.0" - sources."memfs-3.5.1" + sources."memfs-3.5.2" sources."memory-cache-0.2.0" sources."merge-descriptors-1.0.1" sources."merge-stream-2.0.0" @@ -104900,7 +104273,7 @@ in ]; }) sources."terminal-link-2.1.1" - (sources."terser-5.17.6" // { + (sources."terser-5.17.7" // { dependencies = [ sources."commander-2.20.3" sources."source-map-support-0.5.21" @@ -104927,12 +104300,12 @@ in sources."traverse-0.6.7" sources."tree-kill-1.2.2" sources."ts-interface-checker-0.1.13" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."turndown-7.0.0" sources."type-fest-0.12.0" sources."type-is-1.6.18" sources."typedarray-0.0.6" - sources."ua-parser-js-0.7.35" + sources."ua-parser-js-1.0.35" sources."unicode-canonical-property-names-ecmascript-2.0.0" sources."unicode-match-property-ecmascript-2.0.0" sources."unicode-match-property-value-ecmascript-2.1.0" @@ -104965,7 +104338,7 @@ in sources."wbuf-1.7.3" sources."wcwidth-1.0.1" sources."webidl-conversions-3.0.1" - (sources."webpack-5.84.1" // { + (sources."webpack-5.85.0" // { dependencies = [ sources."ajv-6.12.6" sources."json-schema-traverse-0.4.1" @@ -104993,7 +104366,7 @@ in sources."express-4.18.2" sources."finalhandler-1.2.0" sources."get-stream-6.0.1" - sources."ipaddr.js-2.0.1" + sources."ipaddr.js-2.1.0" sources."mimic-fn-2.1.0" sources."ms-2.0.0" sources."npm-run-path-4.0.1" @@ -105034,7 +104407,7 @@ in sources."uuid-7.0.3" ]; }) - (sources."xdl-60.0.8" // { + (sources."xdl-60.0.9" // { dependencies = [ sources."bplist-parser-0.3.2" sources."minimatch-3.0.4" @@ -105090,7 +104463,7 @@ in sources."@babel/helper-validator-option-7.21.0" sources."@babel/helpers-7.22.3" sources."@babel/highlight-7.18.6" - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/plugin-proposal-object-rest-spread-7.20.7" sources."@babel/plugin-syntax-jsx-7.21.4" sources."@babel/plugin-syntax-object-rest-spread-7.8.3" @@ -105098,8 +104471,8 @@ in sources."@babel/plugin-transform-parameters-7.22.3" sources."@babel/plugin-transform-react-jsx-7.22.3" sources."@babel/template-7.21.9" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.0" sources."@jridgewell/set-array-1.1.2" @@ -105113,7 +104486,7 @@ in sources."@types/node-20.2.5" sources."@types/normalize-package-data-2.4.1" sources."@types/prop-types-15.7.5" - sources."@types/react-18.2.7" + sources."@types/react-18.2.8" sources."@types/scheduler-0.16.3" sources."@types/yauzl-2.10.0" sources."@types/yoga-layout-1.9.2" @@ -105132,7 +104505,7 @@ in sources."base64-js-1.5.1" sources."bl-4.1.0" sources."brace-expansion-1.1.11" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."buffer-5.7.1" sources."buffer-crc32-0.2.13" sources."bufferutil-4.0.7" @@ -105141,7 +104514,7 @@ in sources."callsites-3.1.0" sources."camelcase-5.3.1" sources."camelcase-keys-6.2.2" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."chalk-2.4.2" sources."chownr-1.1.4" sources."ci-info-2.0.0" @@ -105167,7 +104540,7 @@ in }) sources."delay-5.0.0" sources."devtools-protocol-0.0.981744" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."emoji-regex-8.0.0" sources."encoding-0.1.13" sources."end-of-stream-1.4.4" @@ -105396,7 +104769,7 @@ in ]; }) sources."@oclif/linewrap-1.0.0" - sources."@oclif/parser-3.8.11" + sources."@oclif/parser-3.8.12" (sources."@oclif/plugin-autocomplete-0.1.5" // { dependencies = [ sources."ansi-styles-3.2.1" @@ -105696,7 +105069,7 @@ in sources."sshpk-1.17.0" sources."stealthy-require-1.1.1" sources."stream-chain-2.2.5" - sources."stream-json-1.7.5" + sources."stream-json-1.8.0" sources."strict-uri-encode-1.1.0" sources."string-width-4.2.3" (sources."string_decoder-1.1.1" // { @@ -105719,7 +105092,7 @@ in sources."tough-cookie-2.5.0" sources."tr46-0.0.3" sources."treeify-1.1.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" sources."type-check-0.3.2" @@ -105757,10 +105130,10 @@ in firebase-tools = nodeEnv.buildNodePackage { name = "firebase-tools"; packageName = "firebase-tools"; - version = "12.2.1"; + version = "12.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/firebase-tools/-/firebase-tools-12.2.1.tgz"; - sha512 = "9QjNJRFf+v5kgkRO0yXmVYNUZ8fZI6FrOTrgp7YQ2fhqytaIpEQrKSbKZebGlSjDGvcX87daKEsUEjqj0LuSvw=="; + url = "https://registry.npmjs.org/firebase-tools/-/firebase-tools-12.3.0.tgz"; + sha512 = "Z6Pl3Vp1wMKEroqCvT8Fm9UDXhWK+Bdq5zQjfTngTBqLL2FlL0/C4aG+D69aCLg5Q9Xyq8mc2pWnaEge40GqFw=="; }; dependencies = [ (sources."@apidevtools/json-schema-ref-parser-9.1.2" // { @@ -105768,7 +105141,7 @@ in sources."js-yaml-4.1.0" ]; }) - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@colors/colors-1.5.0" sources."@dabh/diagnostics-2.0.3" sources."@gar/promisify-1.1.3" @@ -106264,7 +105637,7 @@ in dependencies = [ sources."ansi-escapes-6.2.0" sources."chalk-5.2.0" - sources."type-fest-3.11.0" + sources."type-fest-3.11.1" ]; }) sources."mdurl-1.0.1" @@ -106468,7 +105841,7 @@ in sources."stack-trace-0.0.10" sources."statuses-2.0.1" sources."stream-chain-2.2.5" - sources."stream-json-1.7.5" + sources."stream-json-1.8.0" sources."stream-shift-1.0.1" sources."string-width-4.2.3" sources."string_decoder-1.3.0" @@ -106504,7 +105877,7 @@ in sources."toxic-1.0.1" sources."tr46-0.0.3" sources."triple-beam-1.3.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" sources."type-check-0.3.2" @@ -106816,7 +106189,7 @@ in sources."through-2.3.8" sources."tmp-0.0.33" sources."trim-newlines-4.1.1" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."type-fest-0.21.3" sources."util-deprecate-1.0.2" sources."validate-npm-package-license-3.0.4" @@ -107656,7 +107029,7 @@ in sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/plugin-syntax-jsx-7.21.4" sources."@babel/plugin-syntax-typescript-7.21.4" sources."@babel/plugin-transform-modules-commonjs-7.21.5" @@ -107664,8 +107037,8 @@ in sources."@babel/preset-typescript-7.21.5" sources."@babel/runtime-7.22.3" sources."@babel/template-7.21.9" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" sources."@hapi/hoek-9.3.0" sources."@hapi/topo-5.1.0" sources."@jridgewell/gen-mapping-0.3.3" @@ -107720,7 +107093,7 @@ in sources."boolbase-1.0.0" sources."boxen-5.1.2" sources."brace-expansion-1.1.11" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."cacheable-lookup-5.0.4" (sources."cacheable-request-7.0.2" // { dependencies = [ @@ -107728,7 +107101,7 @@ in ]; }) sources."camelcase-6.3.0" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" (sources."chalk-4.1.2" // { dependencies = [ sources."ansi-styles-4.3.0" @@ -107789,7 +107162,7 @@ in sources."domhandler-4.3.1" sources."domutils-2.8.0" sources."dot-prop-5.3.0" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."emoji-regex-8.0.0" sources."encoding-0.1.13" sources."end-of-stream-1.4.4" @@ -107891,7 +107264,7 @@ in sources."mimic-response-1.0.1" sources."minimatch-3.1.2" sources."ms-2.1.2" - sources."msgpackr-1.9.2" + sources."msgpackr-1.9.3" (sources."msgpackr-extract-3.0.2" // { dependencies = [ sources."node-gyp-build-optional-packages-5.0.7" @@ -108038,10 +107411,10 @@ in generator-code = nodeEnv.buildNodePackage { name = "generator-code"; packageName = "generator-code"; - version = "1.7.6"; + version = "1.7.7"; src = fetchurl { - url = "https://registry.npmjs.org/generator-code/-/generator-code-1.7.6.tgz"; - sha512 = "LZHxnoFnXWZaN4peq7XhLs70cOjq13TQQX/nDWAxpOzBiy+hKJSpZPAVJ8OmYZ8NU9s8TnFTAZC5l2OOn+l3AA=="; + url = "https://registry.npmjs.org/generator-code/-/generator-code-1.7.7.tgz"; + sha512 = "rbpBpdiUDTfqWrXPNqEEt/TLkB0tlLtPmgQ4o/la481ar/Sc7rIR/9CN+3SovpbGxQYLb8bqMOyfY1HWqFcJ1A=="; }; dependencies = [ sources."@babel/code-frame-7.21.4" @@ -108255,6 +107628,7 @@ in sources."@types/normalize-package-data-2.4.1" sources."@types/vinyl-2.0.7" sources."abbrev-1.1.1" + sources."abort-controller-3.0.0" sources."agent-base-6.0.2" sources."agentkeepalive-4.3.0" sources."aggregate-error-3.1.0" @@ -108360,7 +107734,9 @@ in sources."error-ex-1.3.2" sources."escape-string-regexp-1.0.5" sources."esprima-4.0.1" + sources."event-target-shim-5.0.1" sources."eventemitter3-4.0.7" + sources."events-3.3.0" sources."execa-5.1.1" (sources."external-editor-3.1.0" // { dependencies = [ @@ -108598,7 +107974,7 @@ in sources."path-parse-1.0.7" (sources."path-scurry-1.9.2" // { dependencies = [ - sources."lru-cache-9.1.1" + sources."lru-cache-9.1.2" ]; }) sources."path-type-4.0.0" @@ -108615,6 +107991,7 @@ in }) sources."pretty-bytes-5.6.0" sources."proc-log-3.0.0" + sources."process-0.11.10" sources."process-nextick-args-2.0.1" sources."promise-all-reject-late-1.0.1" sources."promise-call-limit-1.0.2" @@ -108622,7 +107999,7 @@ in sources."promise-retry-2.0.1" sources."queue-microtask-1.2.3" sources."read-cmd-shim-3.0.1" - (sources."read-package-json-6.0.3" // { + (sources."read-package-json-6.0.4" // { dependencies = [ sources."glob-10.2.6" sources."minimatch-9.0.1" @@ -108712,7 +108089,7 @@ in sources."tr46-0.0.3" sources."treeverse-1.0.4" sources."truncate-utf8-bytes-1.0.2" - sources."tslib-2.5.2" + sources."tslib-2.5.3" (sources."tuf-js-1.1.6" // { dependencies = [ sources."make-fetch-happen-11.1.1" @@ -108750,7 +108127,7 @@ in sources."wrappy-1.0.2" sources."write-file-atomic-4.0.2" sources."yallist-4.0.0" - (sources."yeoman-environment-3.18.4" // { + (sources."yeoman-environment-3.19.3" // { dependencies = [ sources."@npmcli/fs-1.1.1" sources."@npmcli/git-2.1.0" @@ -108760,8 +108137,13 @@ in sources."@npmcli/promise-spawn-1.3.2" sources."@npmcli/run-script-2.0.0" sources."@tootallnate/once-1.1.2" - sources."are-we-there-yet-2.0.0" + (sources."are-we-there-yet-2.0.0" // { + dependencies = [ + sources."readable-stream-3.6.2" + ]; + }) sources."brace-expansion-1.1.11" + sources."buffer-6.0.3" sources."builtins-1.0.3" sources."cacache-15.3.0" sources."escape-string-regexp-4.0.0" @@ -108790,6 +108172,7 @@ in sources."are-we-there-yet-3.0.1" sources."gauge-4.0.4" sources."npmlog-6.0.2" + sources."readable-stream-3.6.2" ]; }) sources."nopt-5.0.0" @@ -108823,7 +108206,7 @@ in sources."p-locate-5.0.0" sources."pacote-12.0.3" sources."read-package-json-fast-2.0.3" - sources."readable-stream-3.6.2" + sources."readable-stream-4.4.0" sources."socks-proxy-agent-6.2.1" sources."ssri-8.0.1" sources."unique-filename-1.1.1" @@ -109157,15 +108540,15 @@ in "@gitbeaker/cli" = nodeEnv.buildNodePackage { name = "_at_gitbeaker_slash_cli"; packageName = "@gitbeaker/cli"; - version = "38.9.0"; + version = "38.10.0"; src = fetchurl { - url = "https://registry.npmjs.org/@gitbeaker/cli/-/cli-38.9.0.tgz"; - sha512 = "SKusmMlHSrHiX4oxch4qVSC/kfc6LXYN1VGHscG4M1KjlRI/RqCqjGxgHgK0Aov60FsgR+bWzcqvqt+CQZyMDw=="; + url = "https://registry.npmjs.org/@gitbeaker/cli/-/cli-38.10.0.tgz"; + sha512 = "DjaTmywrC26v4+3n8AtJuxtQlxiff9btQZskG0afOiCAQuldpVB8wZvmfwQuHBsTnCPEU7JpckgSHL9yq8kaWw=="; }; dependencies = [ - sources."@gitbeaker/core-38.9.0" - sources."@gitbeaker/requester-utils-38.9.0" - sources."@gitbeaker/rest-38.9.0" + sources."@gitbeaker/core-38.10.0" + sources."@gitbeaker/requester-utils-38.10.0" + sources."@gitbeaker/rest-38.10.0" sources."ansi-styles-4.3.0" sources."call-bind-1.0.2" sources."chalk-4.1.2" @@ -109197,10 +108580,10 @@ in gitmoji-cli = nodeEnv.buildNodePackage { name = "gitmoji-cli"; packageName = "gitmoji-cli"; - version = "8.2.3"; + version = "8.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/gitmoji-cli/-/gitmoji-cli-8.2.3.tgz"; - sha512 = "4hMJQWKNRHTf6wwj9SyVmca1C1e5UonEt8k7iMTmZksdeehYg4d1UvKz808pRVwYfJx1HMts/Ie8mHmL2IxHJA=="; + url = "https://registry.npmjs.org/gitmoji-cli/-/gitmoji-cli-8.3.0.tgz"; + sha512 = "Dr3AWxT/SWS9mmyrD0vJr7z9oG7W1tBOKq3ChVn7FAFNZiN3fW44FrOIePXC+Mx0SrNOheThjtfxoUqeKOixhw=="; }; dependencies = [ sources."@babel/code-frame-7.21.4" @@ -109223,7 +108606,7 @@ in ]; }) sources."@pnpm/npm-conf-2.2.0" - sources."@sindresorhus/is-5.3.0" + sources."@sindresorhus/is-5.4.0" sources."@szmarczak/http-timer-5.0.1" sources."@tootallnate/once-1.1.2" sources."@types/http-cache-semantics-4.0.1" @@ -109391,7 +108774,7 @@ in dependencies = [ sources."ansi-escapes-6.2.0" sources."run-async-2.4.1" - sources."type-fest-3.11.0" + sources."type-fest-3.11.1" ]; }) sources."ip-1.1.8" @@ -109435,7 +108818,7 @@ in sources."map-obj-4.3.0" (sources."meow-11.0.0" // { dependencies = [ - sources."type-fest-3.11.0" + sources."type-fest-3.11.1" ]; }) sources."merge-stream-2.0.0" @@ -109560,7 +108943,7 @@ in sources."tmp-0.0.33" sources."toidentifier-1.0.1" sources."trim-newlines-4.1.1" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."type-check-0.3.2" sources."type-fest-2.19.0" sources."typedarray-to-buffer-3.1.5" @@ -109628,7 +109011,7 @@ in sources."is-fullwidth-code-point-3.0.0" sources."isexe-2.0.0" sources."jackspeak-2.2.1" - sources."lru-cache-9.1.1" + sources."lru-cache-9.1.2" sources."minimatch-9.0.1" sources."minipass-6.0.2" sources."path-key-3.1.1" @@ -109954,7 +109337,7 @@ in (sources."@graphql-tools/import-6.7.18" // { dependencies = [ sources."@graphql-tools/utils-9.2.1" - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) (sources."@graphql-tools/json-file-loader-6.2.6" // { @@ -109966,7 +109349,7 @@ in }) (sources."camel-case-4.1.2" // { dependencies = [ - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) ]; @@ -109982,7 +109365,7 @@ in dependencies = [ sources."@graphql-tools/merge-8.3.1" sources."@graphql-tools/utils-8.9.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) (sources."@graphql-tools/url-loader-6.10.1" // { @@ -110270,7 +109653,7 @@ in }) (sources."lower-case-2.0.2" // { dependencies = [ - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) sources."lowercase-keys-1.0.1" @@ -110297,7 +109680,7 @@ in sources."nice-try-1.0.5" (sources."no-case-3.0.4" // { dependencies = [ - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) sources."node-emoji-1.10.0" @@ -110356,7 +109739,7 @@ in sources."parse-json-5.2.0" (sources."pascal-case-3.1.2" // { dependencies = [ - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) sources."passwd-user-3.0.0" @@ -110498,9 +109881,9 @@ in sources."@babel/helper-string-parser-7.21.5" sources."@babel/helper-validator-identifier-7.19.1" sources."@babel/highlight-7.18.6" - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/polyfill-7.12.1" - sources."@babel/types-7.22.3" + sources."@babel/types-7.22.4" sources."@endemolshinegroup/cosmiconfig-typescript-loader-3.0.2" sources."@graphql-tools/batch-execute-8.5.22" sources."@graphql-tools/delegate-9.0.35" @@ -110659,8 +110042,8 @@ in sources."to-regex-range-5.0.1" sources."tr46-0.0.3" sources."ts-node-9.1.1" - sources."tslib-2.5.2" - sources."typescript-5.0.4" + sources."tslib-2.5.3" + sources."typescript-5.1.3" sources."unixify-1.0.0" sources."urlpattern-polyfill-8.0.2" sources."utf-8-validate-6.0.3" @@ -110763,7 +110146,7 @@ in sources."@oclif/config-1.17.0" sources."@oclif/errors-1.3.4" sources."@oclif/linewrap-1.0.0" - (sources."@oclif/parser-3.8.11" // { + (sources."@oclif/parser-3.8.12" // { dependencies = [ sources."@oclif/errors-1.3.6" ]; @@ -111062,7 +110445,7 @@ in sources."tr46-0.0.3" sources."tree-kit-0.7.4" sources."treeify-1.1.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."type-is-1.6.18" sources."uniq-1.0.1" sources."universalify-0.1.2" @@ -111401,9 +110784,9 @@ in sources."supports-color-7.2.0" ]; }) - sources."systeminformation-5.17.13" + sources."systeminformation-5.17.16" sources."term-canvas-0.0.5" - sources."type-fest-3.11.0" + sources."type-fest-3.11.1" sources."wordwrap-0.0.3" sources."x256-0.0.2" sources."xml2js-0.4.23" @@ -112625,7 +112008,7 @@ in sources."async-2.6.4" sources."asynckit-0.4.0" sources."available-typed-arrays-1.0.5" - sources."aws-sdk-2.1386.0" + sources."aws-sdk-2.1390.0" sources."aws-sign2-0.7.0" sources."aws4-1.12.0" sources."base64-js-1.5.1" @@ -113179,7 +112562,7 @@ in sources."string-width-4.2.3" sources."strip-ansi-6.0.1" sources."supports-color-5.5.0" - sources."systeminformation-5.17.13" + sources."systeminformation-5.17.16" sources."yocto-queue-0.1.0" ]; buildInputs = globalBuildInputs; @@ -113542,7 +112925,7 @@ in sources."to-regex-range-5.0.1" sources."tough-cookie-4.1.2" sources."tr46-0.0.3" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."tunnel-0.0.6" sources."tunnel-agent-0.6.0" sources."turndown-7.1.2" @@ -113560,9 +112943,8 @@ in sources."vscode-languageserver-types-3.17.3" ]; }) - (sources."vscode-html-languageservice-5.0.5" // { + (sources."vscode-html-languageservice-5.0.6" // { dependencies = [ - sources."@vscode/l10n-0.0.13" sources."vscode-languageserver-types-3.17.3" ]; }) @@ -113627,7 +113009,7 @@ in sources."ansi-styles-3.2.1" (sources."ast-types-0.13.4" // { dependencies = [ - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) sources."astral-regex-2.0.0" @@ -114153,22 +113535,33 @@ in sources."@aws-sdk/property-provider-3.226.0" sources."@aws-sdk/protocol-http-3.226.0" sources."@aws-sdk/querystring-builder-3.226.0" - (sources."@aws-sdk/querystring-parser-3.341.0" // { + (sources."@aws-sdk/querystring-parser-3.342.0" // { dependencies = [ - sources."@aws-sdk/types-3.341.0" + sources."@aws-sdk/types-3.342.0" ]; }) sources."@aws-sdk/s3-request-presigner-3.241.0" sources."@aws-sdk/service-error-classification-3.229.0" sources."@aws-sdk/shared-ini-file-loader-3.226.0" sources."@aws-sdk/signature-v4-3.226.0" - (sources."@aws-sdk/signature-v4-crt-3.341.0" // { + (sources."@aws-sdk/signature-v4-crt-3.342.0" // { dependencies = [ + (sources."@aws-crypto/crc32-3.0.0" // { + dependencies = [ + sources."tslib-1.14.1" + ]; + }) + (sources."@aws-crypto/util-3.0.0" // { + dependencies = [ + sources."tslib-1.14.1" + ]; + }) + sources."@aws-sdk/eventstream-codec-3.342.0" sources."@aws-sdk/is-array-buffer-3.310.0" - sources."@aws-sdk/signature-v4-3.341.0" - sources."@aws-sdk/types-3.341.0" + sources."@aws-sdk/signature-v4-3.342.0" + sources."@aws-sdk/types-3.342.0" sources."@aws-sdk/util-hex-encoding-3.310.0" - sources."@aws-sdk/util-middleware-3.341.0" + sources."@aws-sdk/util-middleware-3.342.0" sources."@aws-sdk/util-uri-escape-3.310.0" ]; }) @@ -114401,8 +113794,8 @@ in ]; }) sources."cwise-compiler-1.1.3" - sources."d3-7.8.4" - sources."d3-array-3.2.3" + sources."d3-7.8.5" + sources."d3-array-3.2.4" sources."d3-axis-3.0.0" sources."d3-brush-3.0.0" sources."d3-chord-3.0.1" @@ -114823,7 +114216,7 @@ in sources."negotiator-0.6.3" sources."nextgen-events-1.5.3" sources."no-case-2.3.2" - (sources."node-abi-3.40.0" // { + (sources."node-abi-3.43.0" // { dependencies = [ sources."semver-7.5.1" ]; @@ -115096,7 +114489,7 @@ in sources."tr46-3.0.0" sources."traverse-0.3.9" sources."tree-kit-0.7.4" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" sources."type-check-0.3.2" @@ -115179,10 +114572,10 @@ in js-beautify = nodeEnv.buildNodePackage { name = "js-beautify"; packageName = "js-beautify"; - version = "1.14.7"; + version = "1.14.8"; src = fetchurl { - url = "https://registry.npmjs.org/js-beautify/-/js-beautify-1.14.7.tgz"; - sha512 = "5SOX1KXPFKx+5f6ZrPsIPEY7NwKeQz47n3jm2i+XeHx9MoRsfQenlOP13FQhWvg8JRS0+XLO6XYUQ2GX+q+T9A=="; + url = "https://registry.npmjs.org/js-beautify/-/js-beautify-1.14.8.tgz"; + sha512 = "4S7HFeI9YfRvRgKnEweohs0tgJj28InHVIj4Nl8Htf96Y6pHg3+tJrmo4ucAM9f7l4SHbFI3IvFAZ2a1eQPbyg=="; }; dependencies = [ sources."abbrev-1.1.1" @@ -115247,7 +114640,7 @@ in sha512 = "e8cIg2z62InH7azBBi3EsSEqrKx+nUtAS5bBcYTSpZFA+vhNPyhv8PTFZ0WsjOPDj04/dOLlm08EDcQJDqaGQg=="; }; dependencies = [ - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@jsdoc/salty-0.2.5" sources."@types/linkify-it-3.0.2" sources."@types/markdown-it-12.2.3" @@ -115467,8 +114860,8 @@ in sources."ms-2.1.2" ]; }) - sources."@eslint/js-8.41.0" - (sources."@humanwhocodes/config-array-0.11.8" // { + sources."@eslint/js-8.42.0" + (sources."@humanwhocodes/config-array-0.11.10" // { dependencies = [ sources."debug-4.3.4" sources."ms-2.1.2" @@ -115546,13 +114939,13 @@ in sources."escalade-3.1.1" sources."escape-html-1.0.3" sources."escape-string-regexp-4.0.0" - (sources."eslint-8.41.0" // { + (sources."eslint-8.42.0" // { dependencies = [ sources."debug-4.3.4" sources."ms-2.1.2" ]; }) - sources."eslint-config-standard-17.0.0" + sources."eslint-config-standard-17.1.0" sources."eslint-config-standard-jsx-11.0.0" (sources."eslint-import-resolver-node-0.3.7" // { dependencies = [ @@ -115794,8 +115187,8 @@ in sources."shebang-command-2.0.0" sources."shebang-regex-3.0.0" sources."side-channel-1.0.4" - sources."standard-17.0.0" - sources."standard-engine-15.0.0" + sources."standard-17.1.0" + sources."standard-engine-15.1.0" sources."statuses-2.0.1" sources."steno-0.4.4" sources."string-width-4.2.3" @@ -115820,6 +115213,7 @@ in sources."uri-js-4.4.1" sources."utils-merge-1.0.1" sources."vary-1.1.2" + sources."version-guard-1.1.1" sources."which-2.0.2" sources."which-boxed-primitive-1.0.2" sources."which-typed-array-1.1.9" @@ -116473,7 +115867,7 @@ in ]; }) sources."@oclif/linewrap-1.0.0" - sources."@oclif/parser-3.8.11" + sources."@oclif/parser-3.8.12" (sources."@oclif/plugin-help-3.3.1" // { dependencies = [ sources."@oclif/config-1.18.2" @@ -116657,7 +116051,7 @@ in sources."through-2.3.8" sources."tmp-0.0.33" sources."to-regex-range-5.0.1" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."type-2.7.2" sources."type-fest-0.21.3" sources."typedarray-to-buffer-3.1.5" @@ -116829,14 +116223,14 @@ in sources."safer-buffer-2.1.2" sources."setprototypeof-1.2.0" sources."side-channel-1.0.4" - (sources."socket.io-4.6.1" // { + (sources."socket.io-4.6.2" // { dependencies = [ sources."debug-4.3.4" sources."ms-2.1.2" ]; }) sources."socket.io-adapter-2.5.2" - (sources."socket.io-parser-4.2.3" // { + (sources."socket.io-parser-4.2.4" // { dependencies = [ sources."debug-4.3.4" sources."ms-2.1.2" @@ -116919,13 +116313,13 @@ in sources."@babel/helpers-7.22.3" sources."@babel/highlight-7.18.6" sources."@babel/node-7.22.1" - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/plugin-syntax-jsx-7.21.4" sources."@babel/plugin-transform-react-jsx-7.22.3" sources."@babel/register-7.21.0" sources."@babel/template-7.21.9" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.0" sources."@jridgewell/set-array-1.1.2" @@ -117024,13 +116418,13 @@ in sources."braces-3.0.2" sources."browser-or-node-1.3.0" sources."browser-process-hrtime-1.0.0" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."buffer-5.7.1" sources."buffer-from-1.1.2" sources."bufferutil-4.0.7" sources."bytes-3.1.2" sources."call-bind-1.0.2" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."canvas-2.11.2" sources."chalk-2.4.2" sources."chardet-1.5.1" @@ -117090,7 +116484,7 @@ in }) sources."dotenv-8.6.0" sources."ee-first-1.1.1" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."emoji-regex-8.0.0" sources."encodeurl-1.0.2" sources."encoding-0.1.13" @@ -117282,7 +116676,7 @@ in sources."nan-2.17.0" sources."napi-build-utils-1.0.2" sources."negotiator-0.6.3" - (sources."node-abi-3.40.0" // { + (sources."node-abi-3.43.0" // { dependencies = [ sources."lru-cache-6.0.0" sources."semver-7.5.1" @@ -117467,7 +116861,7 @@ in sources."toidentifier-1.0.1" sources."tough-cookie-4.1.2" sources."tr46-0.0.3" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."tunnel-agent-0.6.0" sources."type-check-0.3.2" sources."type-is-1.6.18" @@ -118247,17 +117641,17 @@ in sources."@swc-node/core-1.10.3" sources."@swc-node/register-1.6.5" sources."@swc-node/sourcemap-support-0.3.0" - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" + sources."@swc/core-1.3.61" + sources."@swc/core-darwin-arm64-1.3.61" + sources."@swc/core-darwin-x64-1.3.61" + sources."@swc/core-linux-arm-gnueabihf-1.3.61" + sources."@swc/core-linux-arm64-gnu-1.3.61" + sources."@swc/core-linux-arm64-musl-1.3.61" + sources."@swc/core-linux-x64-gnu-1.3.61" + sources."@swc/core-linux-x64-musl-1.3.61" + sources."@swc/core-win32-arm64-msvc-1.3.61" + sources."@swc/core-win32-ia32-msvc-1.3.61" + sources."@swc/core-win32-x64-msvc-1.3.61" sources."@swc/helpers-0.5.1" sources."@tootallnate/once-2.0.0" sources."@tufjs/canonical-json-1.0.0" @@ -118271,7 +117665,7 @@ in sources."@types/normalize-package-data-2.4.1" sources."@types/parse-json-4.0.0" sources."@yarnpkg/lockfile-1.1.0" - (sources."@yarnpkg/parsers-3.0.0-rc.44" // { + (sources."@yarnpkg/parsers-3.0.0-rc.45" // { dependencies = [ sources."argparse-1.0.10" sources."js-yaml-3.14.1" @@ -118859,7 +118253,7 @@ in sources."minimatch-9.0.1" sources."npm-package-arg-10.1.0" sources."npm-packlist-7.0.4" - sources."read-package-json-6.0.3" + sources."read-package-json-6.0.4" (sources."ssri-10.0.4" // { dependencies = [ sources."minipass-5.0.0" @@ -118884,7 +118278,7 @@ in sources."path-parse-1.0.7" (sources."path-scurry-1.9.2" // { dependencies = [ - sources."lru-cache-9.1.1" + sources."lru-cache-9.1.2" sources."minipass-6.0.2" ]; }) @@ -119042,7 +118436,7 @@ in sources."treeverse-3.0.0" sources."trim-newlines-3.0.1" sources."tsconfig-paths-4.2.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."tuf-js-1.1.6" sources."type-fest-0.21.3" sources."typedarray-0.0.6" @@ -119128,7 +118522,7 @@ in sources."sax-1.2.4" sources."semver-5.7.1" sources."source-map-0.6.1" - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; buildInputs = globalBuildInputs; meta = { @@ -120175,19 +119569,19 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" + sources."@swc/core-1.3.61" + sources."@swc/core-darwin-arm64-1.3.61" + sources."@swc/core-darwin-x64-1.3.61" + sources."@swc/core-linux-arm-gnueabihf-1.3.61" + sources."@swc/core-linux-arm64-gnu-1.3.61" + sources."@swc/core-linux-arm64-musl-1.3.61" + sources."@swc/core-linux-x64-gnu-1.3.61" + sources."@swc/core-linux-x64-musl-1.3.61" + sources."@swc/core-win32-arm64-msvc-1.3.61" + sources."@swc/core-win32-ia32-msvc-1.3.61" + sources."@swc/core-win32-x64-msvc-1.3.61" sources."@swc/helpers-0.5.1" - sources."@swc/wasm-1.3.60" + sources."@swc/wasm-1.3.62" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" @@ -120321,8 +119715,8 @@ in sources."arg-4.1.3" ]; }) - sources."tslib-2.5.2" - sources."typescript-5.0.4" + sources."tslib-2.5.3" + sources."typescript-5.1.3" sources."util-deprecate-1.0.2" sources."v8-compile-cache-lib-3.0.1" sources."valid-data-url-3.0.1" @@ -120387,7 +119781,7 @@ in sources."js-yaml-4.1.0" sources."jsonc-parser-3.2.0" sources."linkify-it-4.0.1" - sources."lru-cache-9.1.1" + sources."lru-cache-9.1.2" sources."markdown-it-13.0.1" sources."markdownlint-0.28.2" sources."markdownlint-micromark-0.1.2" @@ -120610,7 +120004,7 @@ in ]; }) sources."@babel/highlight-7.18.6" - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/plugin-proposal-async-generator-functions-7.20.7" sources."@babel/plugin-proposal-class-properties-7.0.0" sources."@babel/plugin-proposal-json-strings-7.18.6" @@ -120678,8 +120072,8 @@ in ]; }) sources."@babel/template-7.0.0" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" sources."@chemzqm/msgpack-lite-0.1.29" sources."@chemzqm/neovim-5.9.5" sources."@jridgewell/gen-mapping-0.3.3" @@ -120814,7 +120208,7 @@ in ]; }) sources."browserify-zlib-0.2.0" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."buffer-4.9.2" sources."buffer-from-1.1.2" sources."buffer-xor-1.0.3" @@ -120827,7 +120221,7 @@ in }) sources."cache-base-1.0.1" sources."call-bind-1.0.2" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."case-sensitive-paths-webpack-plugin-2.1.2" sources."chalk-2.4.2" sources."chart.js-2.9.4" @@ -120904,7 +120298,7 @@ in sources."define-property-2.0.2" sources."del-3.0.0" sources."depd-1.1.1" - sources."des.js-1.0.1" + sources."des.js-1.1.0" sources."destroy-1.0.4" (sources."diffie-hellman-5.0.3" // { dependencies = [ @@ -120914,7 +120308,7 @@ in sources."domain-browser-1.2.0" sources."duplexify-3.7.1" sources."ee-first-1.1.1" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" (sources."elliptic-6.5.4" // { dependencies = [ sources."bn.js-4.12.0" @@ -122521,7 +121915,7 @@ in sources."near-hd-key-1.2.1" sources."near-ledger-js-0.2.1" sources."near-seed-phrase-0.2.0" - sources."node-abi-3.40.0" + sources."node-abi-3.43.0" sources."node-addon-api-3.2.1" sources."node-fetch-2.6.11" sources."node-gyp-build-4.6.0" @@ -123635,7 +123029,7 @@ in sources."toidentifier-1.0.1" sources."tough-cookie-4.0.0" sources."tr46-0.0.3" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."type-is-1.6.18" sources."typedarray-0.0.6" sources."uglify-js-3.16.3" @@ -123931,10 +123325,10 @@ in np = nodeEnv.buildNodePackage { name = "np"; packageName = "np"; - version = "8.0.1"; + version = "8.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/np/-/np-8.0.1.tgz"; - sha512 = "5Vd3p5LlymIUhQjKIVhcf/Zh1/Mpeuo4agQ53LWXokPnGlWH3SAjZx5jmy56B904uwnKXyM/220GJae5p7/NhA=="; + url = "https://registry.npmjs.org/np/-/np-8.0.2.tgz"; + sha512 = "mkQB4rEx736mbOd8gq4DfTW/Oh11CplO44AalimMehT7EKJB1vht50DdzpsXL78qPbzjPnnP7JddS179dbsAJg=="; }; dependencies = [ sources."@babel/code-frame-7.21.4" @@ -124065,7 +123459,7 @@ in sources."decamelize-6.0.0" (sources."decamelize-keys-2.0.1" // { dependencies = [ - sources."type-fest-3.11.0" + sources."type-fest-3.11.1" ]; }) (sources."decompress-response-6.0.0" // { @@ -124308,7 +123702,7 @@ in sources."map-obj-4.3.0" (sources."meow-12.0.1" // { dependencies = [ - sources."type-fest-3.11.0" + sources."type-fest-3.11.1" ]; }) sources."merge-stream-2.0.0" @@ -124360,7 +123754,7 @@ in sources."os-tmpdir-1.0.2" (sources."ow-1.1.1" // { dependencies = [ - sources."@sindresorhus/is-5.3.0" + sources."@sindresorhus/is-5.4.0" sources."callsites-4.0.0" ]; }) @@ -124372,14 +123766,14 @@ in (sources."p-memoize-7.1.1" // { dependencies = [ sources."mimic-fn-4.0.0" - sources."type-fest-3.11.0" + sources."type-fest-3.11.1" ]; }) sources."p-timeout-6.1.1" sources."p-try-2.2.0" (sources."package-json-8.1.0" // { dependencies = [ - sources."@sindresorhus/is-5.3.0" + sources."@sindresorhus/is-5.4.0" sources."@szmarczak/http-timer-5.0.1" sources."cacheable-lookup-7.0.0" sources."cacheable-request-10.2.10" @@ -124477,7 +123871,7 @@ in sources."run-parallel-1.2.0" (sources."rxjs-7.8.1" // { dependencies = [ - sources."tslib-2.5.2" + sources."tslib-2.5.3" ]; }) sources."safe-buffer-5.2.1" @@ -124635,7 +124029,7 @@ in }) sources."@pnpm/npm-conf-2.2.0" sources."@sigstore/protobuf-specs-0.1.0" - sources."@sindresorhus/is-5.3.0" + sources."@sindresorhus/is-5.4.0" sources."@szmarczak/http-timer-5.0.1" sources."@tootallnate/once-2.0.0" sources."@tufjs/canonical-json-1.0.0" @@ -124915,7 +124309,7 @@ in sources."path-key-3.1.1" (sources."path-scurry-1.9.2" // { dependencies = [ - sources."lru-cache-9.1.1" + sources."lru-cache-9.1.2" sources."minipass-6.0.2" ]; }) @@ -124937,7 +124331,7 @@ in ]; }) sources."rc-config-loader-4.1.2" - (sources."read-package-json-6.0.3" // { + (sources."read-package-json-6.0.4" // { dependencies = [ sources."glob-10.2.6" sources."minipass-6.0.2" @@ -125356,7 +124750,7 @@ in sources."array-union-2.1.0" sources."as-table-1.0.55" sources."ast-types-0.14.2" - sources."astring-1.8.5" + sources."astring-1.8.6" sources."available-typed-arrays-1.0.5" sources."backslash-0.2.0" sources."balanced-match-1.0.2" @@ -125675,10 +125069,10 @@ in sources."toidentifier-1.0.1" sources."tr46-0.0.3" sources."tsconfck-2.1.1" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."type-check-0.3.2" sources."typed-array-length-1.0.4" - sources."typescript-5.0.4" + sources."typescript-5.1.3" sources."unbox-primitive-1.0.2" sources."universalify-0.1.2" sources."unpipe-1.0.0" @@ -125776,10 +125170,10 @@ in sources."@babel/helper-wrap-function-7.20.5" sources."@babel/helpers-7.22.3" sources."@babel/highlight-7.18.6" - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.18.6" sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.22.3" - sources."@babel/plugin-proposal-private-property-in-object-7.21.0" + sources."@babel/plugin-proposal-private-property-in-object-7.21.10" sources."@babel/plugin-proposal-unicode-property-regex-7.18.6" sources."@babel/plugin-syntax-async-generators-7.8.4" sources."@babel/plugin-syntax-class-properties-7.12.13" @@ -125851,7 +125245,7 @@ in sources."@babel/plugin-transform-unicode-property-regex-7.22.3" sources."@babel/plugin-transform-unicode-regex-7.18.6" sources."@babel/plugin-transform-unicode-sets-regex-7.22.3" - (sources."@babel/preset-env-7.22.2" // { + (sources."@babel/preset-env-7.22.4" // { dependencies = [ sources."semver-6.3.0" ]; @@ -125860,8 +125254,8 @@ in sources."@babel/regjsgen-0.8.0" sources."@babel/runtime-7.22.3" sources."@babel/template-7.21.9" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" sources."@iarna/toml-2.2.5" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.0" @@ -125978,7 +125372,7 @@ in sources."pako-1.0.11" ]; }) - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" (sources."buffer-4.9.2" // { dependencies = [ sources."isarray-1.0.0" @@ -125995,7 +125389,7 @@ in sources."caller-path-2.0.0" sources."callsites-2.0.0" sources."caniuse-api-3.0.0" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."caseless-0.12.0" sources."chalk-2.4.2" sources."chokidar-2.1.8" @@ -126101,7 +125495,7 @@ in }) sources."delayed-stream-1.0.0" sources."depd-2.0.0" - sources."des.js-1.0.1" + sources."des.js-1.1.0" sources."destroy-1.2.0" (sources."diffie-hellman-5.0.3" // { dependencies = [ @@ -126128,7 +125522,7 @@ in sources."duplexer2-0.1.4" sources."ecc-jsbn-0.1.2" sources."ee-first-1.1.1" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" (sources."elliptic-6.5.4" // { dependencies = [ sources."bn.js-4.12.0" @@ -126246,7 +125640,7 @@ in sources."acorn-8.8.2" sources."posthtml-0.15.2" sources."posthtml-parser-0.7.2" - sources."terser-5.17.6" + sources."terser-5.17.7" ]; }) (sources."htmlparser2-6.1.0" // { @@ -126893,17 +126287,17 @@ in ]; }) sources."@parcel/workers-2.9.1" - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" + sources."@swc/core-1.3.61" + sources."@swc/core-darwin-arm64-1.3.61" + sources."@swc/core-darwin-x64-1.3.61" + sources."@swc/core-linux-arm-gnueabihf-1.3.61" + sources."@swc/core-linux-arm64-gnu-1.3.61" + sources."@swc/core-linux-arm64-musl-1.3.61" + sources."@swc/core-linux-x64-gnu-1.3.61" + sources."@swc/core-linux-x64-musl-1.3.61" + sources."@swc/core-win32-arm64-msvc-1.3.61" + sources."@swc/core-win32-ia32-msvc-1.3.61" + sources."@swc/core-win32-x64-msvc-1.3.61" sources."@swc/helpers-0.5.1" sources."@trysound/sax-0.2.0" sources."abab-2.0.6" @@ -126932,11 +126326,11 @@ in sources."brace-expansion-2.0.1" sources."braces-3.0.2" sources."browser-process-hrtime-1.0.0" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."buffer-from-1.1.2" sources."callsites-3.1.0" sources."caniuse-api-3.0.0" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."caseless-0.12.0" (sources."chalk-4.1.2" // { dependencies = [ @@ -126986,7 +126380,7 @@ in sources."dotenv-7.0.0" sources."dotenv-expand-5.1.0" sources."ecc-jsbn-0.1.2" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."entities-4.5.0" sources."error-ex-1.3.2" sources."escalade-3.1.1" @@ -127189,7 +126583,7 @@ in }) sources."symbol-tree-3.2.4" sources."term-size-2.2.1" - (sources."terser-5.17.6" // { + (sources."terser-5.17.7" // { dependencies = [ sources."commander-2.20.3" ]; @@ -127198,7 +126592,7 @@ in sources."to-regex-range-5.0.1" sources."tough-cookie-2.5.0" sources."tr46-1.0.1" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" sources."type-check-0.3.2" @@ -127743,7 +127137,7 @@ in sources."internal-ip-1.2.0" sources."ip-1.1.8" sources."ip-set-1.0.2" - sources."ipaddr.js-2.0.1" + sources."ipaddr.js-2.1.0" sources."is-arguments-1.1.1" sources."is-arrayish-0.2.1" sources."is-core-module-2.12.1" @@ -128270,7 +127664,7 @@ in sources."statuses-2.0.1" (sources."string2compact-1.3.2" // { dependencies = [ - sources."ipaddr.js-2.0.1" + sources."ipaddr.js-2.1.0" ]; }) sources."string_decoder-1.1.1" @@ -128427,7 +127821,7 @@ in ]; }) sources."napi-build-utils-1.0.2" - sources."node-abi-3.40.0" + sources."node-abi-3.43.0" sources."node-fetch-2.6.11" sources."node-notifier-10.0.1" sources."once-1.4.0" @@ -128583,7 +127977,7 @@ in sources."croner-4.1.97" sources."culvert-0.1.2" sources."data-uri-to-buffer-3.0.1" - sources."dayjs-1.11.7" + sources."dayjs-1.11.8" sources."debug-4.3.4" sources."deep-is-0.1.4" sources."degenerator-3.0.4" @@ -128710,10 +128104,10 @@ in sources."string_decoder-0.10.31" sources."supports-color-7.2.0" sources."supports-preserve-symlinks-flag-1.0.0" - sources."systeminformation-5.17.13" + sources."systeminformation-5.17.16" sources."to-regex-range-5.0.1" sources."toidentifier-1.0.1" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."tv4-1.3.0" sources."tx2-1.0.5" sources."type-check-0.3.2" @@ -128829,19 +128223,19 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" + sources."@swc/core-1.3.61" + sources."@swc/core-darwin-arm64-1.3.61" + sources."@swc/core-darwin-x64-1.3.61" + sources."@swc/core-linux-arm-gnueabihf-1.3.61" + sources."@swc/core-linux-arm64-gnu-1.3.61" + sources."@swc/core-linux-arm64-musl-1.3.61" + sources."@swc/core-linux-x64-gnu-1.3.61" + sources."@swc/core-linux-x64-musl-1.3.61" + sources."@swc/core-win32-arm64-msvc-1.3.61" + sources."@swc/core-win32-ia32-msvc-1.3.61" + sources."@swc/core-win32-x64-msvc-1.3.61" sources."@swc/helpers-0.5.1" - sources."@swc/wasm-1.3.60" + sources."@swc/wasm-1.3.62" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" @@ -128913,8 +128307,8 @@ in sources."thenby-1.3.4" sources."to-regex-range-5.0.1" sources."ts-node-10.9.1" - sources."tslib-2.5.2" - sources."typescript-5.0.4" + sources."tslib-2.5.3" + sources."typescript-5.1.3" sources."universalify-2.0.0" sources."v8-compile-cache-lib-3.0.1" sources."wrap-ansi-7.0.0" @@ -128962,7 +128356,7 @@ in sources."minimist-1.2.8" sources."mkdirp-classic-0.5.3" sources."napi-build-utils-1.0.2" - sources."node-abi-3.40.0" + sources."node-abi-3.43.0" sources."once-1.4.0" sources."pump-3.0.0" sources."rc-1.2.8" @@ -129068,13 +128462,13 @@ in prisma = nodeEnv.buildNodePackage { name = "prisma"; packageName = "prisma"; - version = "4.14.1"; + version = "4.15.0"; src = fetchurl { - url = "https://registry.npmjs.org/prisma/-/prisma-4.14.1.tgz"; - sha512 = "z6hxzTMYqT9SIKlzD08dhzsLUpxjFKKsLpp5/kBDnSqiOjtUyyl/dC5tzxLcOa3jkEHQ8+RpB/fE3w8bgNP51g=="; + url = "https://registry.npmjs.org/prisma/-/prisma-4.15.0.tgz"; + sha512 = "iKZZpobPl48gTcSZVawLMQ3lEy6BnXwtoMj7hluoGFYu2kQ6F9LBuBrUyF95zRVnNo8/3KzLXJXJ5TEnLSJFiA=="; }; dependencies = [ - sources."@prisma/engines-4.14.1" + sources."@prisma/engines-4.15.0" ]; buildInputs = globalBuildInputs; meta = { @@ -129089,10 +128483,10 @@ in "@prisma/language-server" = nodeEnv.buildNodePackage { name = "_at_prisma_slash_language-server"; packageName = "@prisma/language-server"; - version = "4.14.1"; + version = "4.15.0"; src = fetchurl { - url = "https://registry.npmjs.org/@prisma/language-server/-/language-server-4.14.1.tgz"; - sha512 = "I9VBVjyTBBEDuluVu+ZuvKyrWYltCzT/qGfeiDObCxWc69xJOYnAB65wKTQZpBD03ZHqThRnlhFtgljRjibYng=="; + url = "https://registry.npmjs.org/@prisma/language-server/-/language-server-4.15.0.tgz"; + sha512 = "zi2FR4OLDvI9kuYT4MqPC8HD4AYAV5WGvlVEahL07y1MU3OSPLvWChdU7EbciiiXiq+hAriotHdINGhvDkkP4g=="; }; dependencies = [ sources."@ampproject/remapping-2.2.1" @@ -129113,10 +128507,10 @@ in sources."@babel/helper-validator-option-7.21.0" sources."@babel/helpers-7.22.3" sources."@babel/highlight-7.18.6" - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/template-7.21.9" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" sources."@istanbuljs/load-nyc-config-1.1.0" sources."@istanbuljs/schema-0.1.3" sources."@jridgewell/gen-mapping-0.3.3" @@ -129128,7 +128522,7 @@ in sources."@jridgewell/sourcemap-codec-1.4.14" ]; }) - sources."@prisma/prisma-fmt-wasm-4.14.0-67.d9a4c5988f480fa576d43970d5a23641aa77bc9c" + sources."@prisma/prisma-fmt-wasm-4.15.0-28.8fbc245156db7124f997f4cecdd8d1219e360944" sources."@types/js-levenshtein-1.1.1" sources."aggregate-error-3.1.0" sources."ansi-regex-5.0.1" @@ -129138,10 +128532,10 @@ in sources."argparse-1.0.10" sources."balanced-match-1.0.2" sources."brace-expansion-1.1.11" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."caching-transform-4.0.0" sources."camelcase-5.3.1" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."chalk-2.4.2" sources."clean-stack-2.2.0" sources."cliui-6.0.0" @@ -129154,7 +128548,7 @@ in sources."debug-4.3.4" sources."decamelize-1.2.0" sources."default-require-extensions-3.0.1" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."emoji-regex-8.0.0" sources."es6-error-4.1.1" sources."escalade-3.1.1" @@ -129322,7 +128716,7 @@ in sources."jackspeak-2.2.1" sources."keypress-0.2.1" sources."lodash-4.17.21" - sources."lru-cache-9.1.1" + sources."lru-cache-9.1.2" sources."minimatch-3.0.8" sources."minipass-6.0.2" sources."once-1.4.0" @@ -129451,7 +128845,7 @@ in sources."dash-ast-1.0.0" sources."defined-1.0.1" sources."deps-sort-2.0.1" - sources."des.js-1.0.1" + sources."des.js-1.1.0" sources."detective-5.2.1" (sources."diffie-hellman-5.0.3" // { dependencies = [ @@ -129692,10 +129086,10 @@ in purs-tidy = nodeEnv.buildNodePackage { name = "purs-tidy"; packageName = "purs-tidy"; - version = "0.9.3"; + version = "0.10.0"; src = fetchurl { - url = "https://registry.npmjs.org/purs-tidy/-/purs-tidy-0.9.3.tgz"; - sha512 = "SrJLOXmlwmMuO1FbjxlyJfcl5sZY7tiS3ky7mvgrb/jYKsyNZwe+XABQlo+uOXQ9OhfytDyB68zabr78hKQ/IA=="; + url = "https://registry.npmjs.org/purs-tidy/-/purs-tidy-0.10.0.tgz"; + sha512 = "ULbJfBHRngczYwcOzugytRiNy+Guy2VXoAG1jMtGaSFEaUZk1lZkKU11t8jIZTrDdOrkgqlWCZLi3mfcHvdimA=="; }; buildInputs = globalBuildInputs; meta = { @@ -129728,17 +129122,21 @@ in pxder = nodeEnv.buildNodePackage { name = "pxder"; packageName = "pxder"; - version = "2.12.7"; + version = "2.12.8"; src = fetchurl { - url = "https://registry.npmjs.org/pxder/-/pxder-2.12.7.tgz"; - sha512 = "IBCWzhShbZt+nUf5ylCIeFMef/C8Mngxs9gA3u256xmEWljClCBnVghVTxDzDWEOadbBKIMXL05I/28FqOuifg=="; + url = "https://registry.npmjs.org/pxder/-/pxder-2.12.8.tgz"; + sha512 = "y1WhrgmrlfxF6wgTVnGIXO177BJj4WrjIfrxGAyZ9pDSDRPHcMySEfjXw1dTkqMD8wnIT0GR3dt1F72FxKRRhQ=="; }; dependencies = [ sources."@sindresorhus/is-0.14.0" sources."@szmarczak/http-timer-1.1.2" - sources."agent-base-6.0.2" + sources."acorn-8.8.2" + sources."acorn-walk-8.2.0" + sources."agent-base-7.1.0" sources."appdata-path-1.0.0" + sources."ast-types-0.13.4" sources."axios-0.24.0" + sources."basic-ftp-5.0.3" sources."blueimp-md5-2.19.0" (sources."cacheable-request-6.1.0" // { dependencies = [ @@ -129751,27 +129149,43 @@ in sources."colors-1.4.0" sources."commander-5.1.0" sources."compare-versions-4.1.4" + sources."data-uri-to-buffer-5.0.1" sources."debug-4.3.4" sources."decompress-response-3.3.0" sources."deep-extend-0.6.0" + sources."deep-is-0.1.4" sources."defer-to-connect-1.1.3" sources."define-lazy-prop-2.0.0" + sources."degenerator-4.0.2" sources."duplexer3-0.1.5" sources."end-of-stream-1.4.4" + sources."escodegen-1.14.3" + sources."esprima-4.0.1" + sources."estraverse-4.3.0" + sources."esutils-2.0.3" + sources."fast-levenshtein-2.0.6" sources."follow-redirects-1.15.2" - sources."fs-extra-10.1.0" + sources."fs-extra-11.1.1" sources."function-bind-1.1.1" sources."get-intrinsic-1.2.1" sources."get-stream-4.1.0" + (sources."get-uri-6.0.1" // { + dependencies = [ + sources."fs-extra-8.1.0" + sources."jsonfile-4.0.0" + sources."universalify-0.1.2" + ]; + }) sources."got-9.6.0" sources."graceful-fs-4.2.11" sources."has-1.0.3" sources."has-proto-1.0.1" sources."has-symbols-1.0.3" sources."http-cache-semantics-4.1.1" - sources."https-proxy-agent-5.0.1" + sources."http-proxy-agent-7.0.0" + sources."https-proxy-agent-7.0.0" sources."ini-1.3.8" - sources."ip-2.0.0" + sources."ip-1.1.8" sources."is-docker-2.2.1" sources."is-wsl-2.2.0" sources."js-base64-3.7.5" @@ -129780,26 +129194,35 @@ in sources."keyv-3.1.0" sources."kleur-3.0.3" sources."latest-version-5.1.0" + sources."levn-0.3.0" sources."lodash.flatmap-4.5.0" sources."lowercase-keys-1.0.1" + sources."lru-cache-7.18.3" sources."mimic-response-1.0.1" sources."minimist-1.2.8" sources."moment-2.29.4" sources."ms-2.1.2" + sources."netmask-2.0.2" sources."node-abort-controller-3.1.1" sources."normalize-url-4.5.1" sources."object-inspect-1.12.3" sources."once-1.4.0" sources."open-8.4.2" + sources."optionator-0.8.3" sources."p-cancelable-1.1.0" + sources."pac-proxy-agent-6.0.3" + sources."pac-resolver-6.0.1" sources."package-json-6.5.0" (sources."pixiv-api-client-0.25.0" // { dependencies = [ sources."axios-0.21.4" ]; }) + sources."prelude-ls-1.1.2" sources."prepend-http-2.0.0" sources."prompts-2.4.2" + sources."proxy-agent-6.2.1" + sources."proxy-from-env-1.1.0" sources."pump-3.0.0" sources."qs-6.11.2" sources."rc-1.2.8" @@ -129812,13 +129235,22 @@ in sources."side-channel-1.0.4" sources."sisteransi-1.0.5" sources."smart-buffer-4.2.0" - sources."socks-2.7.1" - sources."socks-proxy-agent-5.0.1" + (sources."socks-2.7.1" // { + dependencies = [ + sources."ip-2.0.0" + ]; + }) + sources."socks-proxy-agent-8.0.1" + sources."source-map-0.6.1" sources."strip-json-comments-2.0.1" sources."to-readable-stream-1.0.0" + sources."tslib-2.5.3" + sources."type-check-0.3.2" sources."universalify-2.0.0" sources."url-parse-lax-3.0.0" + sources."vm2-3.9.19" sources."winreg-1.2.4" + sources."word-wrap-1.2.3" sources."wrappy-1.0.2" ]; buildInputs = globalBuildInputs; @@ -129834,10 +129266,10 @@ in pyright = nodeEnv.buildNodePackage { name = "pyright"; packageName = "pyright"; - version = "1.1.310"; + version = "1.1.311"; src = fetchurl { - url = "https://registry.npmjs.org/pyright/-/pyright-1.1.310.tgz"; - sha512 = "hDWXUocMWfQoUJLXt89uqLZUbf5jPr0HjtGgXrbHGchhXp7QOTwuW1nZ8iKTJXPD/G8KY/05LhbQ4cRSnXoAog=="; + url = "https://registry.npmjs.org/pyright/-/pyright-1.1.311.tgz"; + sha512 = "/BBt70SxXyTTfDFT4KOWSanPpytOq3qV0+qZtuxw02X0sZwvO+MpJ4mpK372isoUvr2nWqLe6gfbyqGj4wyRWw=="; }; buildInputs = globalBuildInputs; meta = { @@ -129873,19 +129305,19 @@ in sources."typescript-4.9.4" ]; }) - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" + sources."@swc/core-1.3.61" + sources."@swc/core-darwin-arm64-1.3.61" + sources."@swc/core-darwin-x64-1.3.61" + sources."@swc/core-linux-arm-gnueabihf-1.3.61" + sources."@swc/core-linux-arm64-gnu-1.3.61" + sources."@swc/core-linux-arm64-musl-1.3.61" + sources."@swc/core-linux-x64-gnu-1.3.61" + sources."@swc/core-linux-x64-musl-1.3.61" + sources."@swc/core-win32-arm64-msvc-1.3.61" + sources."@swc/core-win32-ia32-msvc-1.3.61" + sources."@swc/core-win32-x64-msvc-1.3.61" sources."@swc/helpers-0.5.1" - sources."@swc/wasm-1.3.60" + sources."@swc/wasm-1.3.62" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" @@ -129988,7 +129420,7 @@ in sources."tiny-inflate-1.0.3" sources."tr46-0.0.3" sources."ts-node-10.9.1" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."typescript-4.9.5" sources."typical-4.0.0" sources."unicode-properties-1.4.1" @@ -130188,13 +129620,13 @@ in sources."@babel/helper-wrap-function-7.20.5" sources."@babel/helpers-7.22.3" sources."@babel/highlight-7.18.6" - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.18.6" sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.22.3" sources."@babel/plugin-proposal-class-properties-7.18.6" sources."@babel/plugin-proposal-export-default-from-7.18.10" sources."@babel/plugin-proposal-optional-chaining-7.21.0" - sources."@babel/plugin-proposal-private-property-in-object-7.21.0" + sources."@babel/plugin-proposal-private-property-in-object-7.21.10" sources."@babel/plugin-proposal-unicode-property-regex-7.18.6" sources."@babel/plugin-syntax-async-generators-7.8.4" sources."@babel/plugin-syntax-class-properties-7.12.13" @@ -130259,7 +129691,7 @@ in sources."@babel/plugin-transform-react-pure-annotations-7.18.6" sources."@babel/plugin-transform-regenerator-7.21.5" sources."@babel/plugin-transform-reserved-words-7.18.6" - (sources."@babel/plugin-transform-runtime-7.22.2" // { + (sources."@babel/plugin-transform-runtime-7.22.4" // { dependencies = [ sources."semver-6.3.0" ]; @@ -130273,7 +129705,7 @@ in sources."@babel/plugin-transform-unicode-property-regex-7.22.3" sources."@babel/plugin-transform-unicode-regex-7.18.6" sources."@babel/plugin-transform-unicode-sets-regex-7.22.3" - (sources."@babel/preset-env-7.22.2" // { + (sources."@babel/preset-env-7.22.4" // { dependencies = [ sources."semver-6.3.0" ]; @@ -130285,8 +129717,8 @@ in sources."@babel/regjsgen-0.8.0" sources."@babel/runtime-7.22.3" sources."@babel/template-7.21.9" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" sources."@jridgewell/gen-mapping-0.3.3" sources."@jridgewell/resolve-uri-3.1.0" sources."@jridgewell/set-array-1.1.2" @@ -130459,7 +129891,7 @@ in ]; }) sources."browserify-zlib-0.1.4" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."buffer-5.7.1" sources."buffer-alloc-1.2.0" sources."buffer-alloc-unsafe-1.1.0" @@ -130489,7 +129921,7 @@ in sources."camel-case-3.0.0" sources."camelcase-5.3.1" sources."caniuse-api-3.0.0" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."case-sensitive-paths-webpack-plugin-2.4.0" sources."caw-2.0.1" sources."chalk-2.4.2" @@ -130671,7 +130103,7 @@ in sources."define-property-2.0.2" sources."del-4.1.1" sources."depd-2.0.0" - sources."des.js-1.0.1" + sources."des.js-1.1.0" sources."destroy-1.2.0" sources."detect-node-2.1.0" (sources."diffie-hellman-5.0.3" // { @@ -130710,7 +130142,7 @@ in sources."duplexify-3.7.1" sources."ee-first-1.1.1" sources."ejs-2.7.4" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" (sources."elliptic-6.5.4" // { dependencies = [ sources."bn.js-4.12.0" @@ -132218,11 +131650,11 @@ in sources."supports-color-5.5.0" ]; }) - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/runtime-7.22.3" sources."@babel/template-7.21.9" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" sources."@emotion/is-prop-valid-1.2.1" sources."@emotion/memoize-0.8.1" sources."@emotion/stylis-0.8.5" @@ -132302,7 +131734,7 @@ in ]; }) sources."browserify-zlib-0.2.0" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."buffer-4.9.2" sources."buffer-from-1.1.2" sources."buffer-xor-1.0.3" @@ -132310,7 +131742,7 @@ in sources."call-me-maybe-1.0.2" sources."camelcase-6.3.0" sources."camelize-1.0.1" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."chalk-4.1.2" sources."chokidar-3.5.3" sources."chrome-trace-event-1.0.3" @@ -132339,7 +131771,7 @@ in sources."css-to-react-native-3.2.0" sources."debug-4.3.4" sources."decko-1.2.0" - sources."des.js-1.0.1" + sources."des.js-1.1.0" (sources."diffie-hellman-5.0.3" // { dependencies = [ sources."bn.js-4.12.0" @@ -132347,7 +131779,7 @@ in }) sources."domain-browser-1.2.0" sources."dompurify-2.4.5" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" (sources."elliptic-6.5.4" // { dependencies = [ sources."bn.js-4.12.0" @@ -132539,7 +131971,7 @@ in sources."supports-color-7.2.0" sources."swagger2openapi-7.0.8" sources."tapable-2.2.1" - sources."terser-5.17.6" + sources."terser-5.17.7" sources."terser-webpack-plugin-5.3.9" sources."timers-browserify-2.0.12" sources."to-arraybuffer-1.0.1" @@ -132570,7 +132002,7 @@ in sources."vm-browserify-1.1.2" sources."watchpack-2.4.0" sources."webidl-conversions-3.0.1" - sources."webpack-5.84.1" + sources."webpack-5.85.0" sources."webpack-sources-3.2.3" sources."whatwg-url-5.0.0" sources."widest-line-3.1.0" @@ -132603,7 +132035,7 @@ in }; dependencies = [ sources."@types/prop-types-15.7.5" - sources."@types/react-18.2.7" + sources."@types/react-18.2.8" sources."@types/scheduler-0.16.3" sources."@types/yoga-layout-1.9.2" sources."ansi-escapes-4.3.2" @@ -133090,7 +132522,7 @@ in sources."is-fullwidth-code-point-3.0.0" sources."isexe-2.0.0" sources."jackspeak-2.2.1" - sources."lru-cache-9.1.1" + sources."lru-cache-9.1.2" sources."minimatch-9.0.1" sources."minipass-6.0.2" sources."path-key-3.1.1" @@ -133167,9 +132599,9 @@ in sources."minimatch-3.1.2" ]; }) - sources."@eslint/js-8.41.0" + sources."@eslint/js-8.42.0" sources."@hpcc-js/wasm-2.5.0" - (sources."@humanwhocodes/config-array-0.11.8" // { + (sources."@humanwhocodes/config-array-0.11.10" // { dependencies = [ sources."brace-expansion-1.1.11" sources."minimatch-3.1.2" @@ -133185,14 +132617,14 @@ in sources."@types/node-16.11.68" sources."@types/semver-7.5.0" sources."@types/vscode-1.66.0" - sources."@typescript-eslint/eslint-plugin-5.59.7" - sources."@typescript-eslint/parser-5.59.7" - sources."@typescript-eslint/scope-manager-5.59.7" - sources."@typescript-eslint/type-utils-5.59.7" - sources."@typescript-eslint/types-5.59.7" - sources."@typescript-eslint/typescript-estree-5.59.7" - sources."@typescript-eslint/utils-5.59.7" - sources."@typescript-eslint/visitor-keys-5.59.7" + sources."@typescript-eslint/eslint-plugin-5.59.8" + sources."@typescript-eslint/parser-5.59.8" + sources."@typescript-eslint/scope-manager-5.59.8" + sources."@typescript-eslint/type-utils-5.59.8" + sources."@typescript-eslint/types-5.59.8" + sources."@typescript-eslint/typescript-estree-5.59.8" + sources."@typescript-eslint/utils-5.59.8" + sources."@typescript-eslint/visitor-keys-5.59.8" sources."@vscode/test-electron-2.3.2" sources."acorn-8.8.2" sources."acorn-jsx-5.3.2" @@ -133233,8 +132665,8 @@ in sources."cross-spawn-7.0.3" sources."css-select-5.1.0" sources."css-what-6.1.0" - sources."d3-7.8.4" - sources."d3-array-3.2.3" + sources."d3-7.8.5" + sources."d3-array-3.2.4" sources."d3-axis-3.0.0" sources."d3-brush-3.0.0" sources."d3-chord-3.0.1" @@ -133282,7 +132714,7 @@ in sources."entities-4.5.0" sources."escalade-3.1.1" sources."escape-string-regexp-4.0.0" - (sources."eslint-8.41.0" // { + (sources."eslint-8.42.0" // { dependencies = [ sources."brace-expansion-1.1.11" sources."eslint-scope-7.2.0" @@ -133393,7 +132825,7 @@ in sources."napi-build-utils-1.0.2" sources."natural-compare-1.4.0" sources."natural-compare-lite-1.4.0" - sources."node-abi-3.40.0" + sources."node-abi-3.43.0" sources."node-addon-api-4.3.0" sources."nth-check-2.1.1" sources."object-inspect-1.12.3" @@ -133468,7 +132900,7 @@ in sources."text-table-0.2.0" sources."tmp-0.2.1" sources."to-regex-range-5.0.1" - sources."tslib-2.5.2" + sources."tslib-2.5.3" (sources."tsutils-3.21.0" // { dependencies = [ sources."tslib-1.14.1" @@ -133838,10 +133270,10 @@ in serverless = nodeEnv.buildNodePackage { name = "serverless"; packageName = "serverless"; - version = "3.31.0"; + version = "3.32.2"; src = fetchurl { - url = "https://registry.npmjs.org/serverless/-/serverless-3.31.0.tgz"; - sha512 = "Cr2gEoPxxPFI1sLsLn5hzcsGMpsgzVEb7tiU0I/zcBe4Yug70bQrnZWReYw7N+DZlOMoWQ9ifCXD6yF1wWPQXg=="; + url = "https://registry.npmjs.org/serverless/-/serverless-3.32.2.tgz"; + sha512 = "OIh0dF8siYI2coGFVXg1iKvkjZXO1g7LXXe2asZe0HDEXENlgLA47zMerz1l3iFWVHsFN0901c+eW8av2W/Uaw=="; }; dependencies = [ sources."2-thenable-1.0.0" @@ -133905,7 +133337,7 @@ in sources."asynckit-0.4.0" sources."at-least-node-1.0.0" sources."available-typed-arrays-1.0.5" - (sources."aws-sdk-2.1386.0" // { + (sources."aws-sdk-2.1390.0" // { dependencies = [ sources."buffer-4.9.2" sources."ieee754-1.1.13" @@ -133998,7 +133430,7 @@ in sources."type-1.2.0" ]; }) - sources."dayjs-1.11.7" + sources."dayjs-1.11.8" sources."debug-4.3.4" (sources."decompress-4.2.1" // { dependencies = [ @@ -134044,7 +133476,7 @@ in sources."delayed-stream-1.0.0" sources."dezalgo-1.0.4" sources."dir-glob-3.0.1" - sources."dotenv-16.0.3" + sources."dotenv-16.1.3" sources."dotenv-expand-10.0.0" sources."duration-0.2.2" sources."emoji-regex-8.0.0" @@ -134332,7 +133764,7 @@ in sources."tr46-0.0.3" sources."traverse-0.6.7" sources."trim-repeated-1.0.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."type-2.7.2" sources."type-fest-0.21.3" sources."unbzip2-stream-1.4.3" @@ -135019,17 +134451,17 @@ in snyk = nodeEnv.buildNodePackage { name = "snyk"; packageName = "snyk"; - version = "1.1168.0"; + version = "1.1173.0"; src = fetchurl { - url = "https://registry.npmjs.org/snyk/-/snyk-1.1168.0.tgz"; - sha512 = "tv6pjESru/v5vnR848xwzPj+Oc8CCFDaNRkF+eQjH0jOnOqLz49EDHCrioOulDuBYIFlpX8Tfq/7fCMLyZkuuQ=="; + url = "https://registry.npmjs.org/snyk/-/snyk-1.1173.0.tgz"; + sha512 = "+HVJhjFxxY/VVQFF3lB2DuIx0L3jIzf8ty7s5ATpGDJXNcRTTFqm3pb1zqWtbsx4sWlTkS9u/pDKpDWXRzY7Qw=="; }; dependencies = [ - sources."@sentry-internal/tracing-7.53.1" - sources."@sentry/core-7.53.1" - sources."@sentry/node-7.53.1" - sources."@sentry/types-7.53.1" - sources."@sentry/utils-7.53.1" + sources."@sentry-internal/tracing-7.54.0" + sources."@sentry/core-7.54.0" + sources."@sentry/node-7.54.0" + sources."@sentry/types-7.54.0" + sources."@sentry/utils-7.54.0" sources."agent-base-6.0.2" sources."boolean-3.2.0" sources."cookie-0.4.2" @@ -135075,10 +134507,10 @@ in "socket.io" = nodeEnv.buildNodePackage { name = "socket.io"; packageName = "socket.io"; - version = "4.6.1"; + version = "4.6.2"; src = fetchurl { - url = "https://registry.npmjs.org/socket.io/-/socket.io-4.6.1.tgz"; - sha512 = "KMcaAi4l/8+xEjkRICl6ak8ySoxsYG+gG6/XfRCPJPQ/haCRIJBTL4wIl8YCsmtaBovcAXGLOShyVWQ/FG8GZA=="; + url = "https://registry.npmjs.org/socket.io/-/socket.io-4.6.2.tgz"; + sha512 = "Vp+lSks5k0dewYTfwgPT9UeGGd+ht7sCpB7p0e83VgO4X/AHYWhXITMrNk/pg8syY2bpx23ptClCQuHhqi2BgQ=="; }; dependencies = [ sources."@socket.io/component-emitter-3.1.0" @@ -135100,7 +134532,7 @@ in sources."node-gyp-build-4.6.0" sources."object-assign-4.1.1" sources."socket.io-adapter-2.5.2" - sources."socket.io-parser-4.2.3" + sources."socket.io-parser-4.2.4" sources."utf-8-validate-5.0.10" sources."vary-1.1.2" sources."ws-8.11.0" @@ -136390,7 +135822,7 @@ in sources."async-limiter-1.0.1" sources."asynckit-0.4.0" sources."available-typed-arrays-1.0.5" - (sources."aws-sdk-2.1386.0" // { + (sources."aws-sdk-2.1390.0" // { dependencies = [ sources."uuid-8.0.0" ]; @@ -137197,18 +136629,18 @@ in stylelint = nodeEnv.buildNodePackage { name = "stylelint"; packageName = "stylelint"; - version = "15.6.2"; + version = "15.6.3"; src = fetchurl { - url = "https://registry.npmjs.org/stylelint/-/stylelint-15.6.2.tgz"; - sha512 = "fjQWwcdUye4DU+0oIxNGwawIPC5DvG5kdObY5Sg4rc87untze3gC/5g/ikePqVjrAsBUZjwMN+pZsAYbDO6ArQ=="; + url = "https://registry.npmjs.org/stylelint/-/stylelint-15.6.3.tgz"; + sha512 = "qWUfFsnPyrgK8NMFvGkjUrF1+DNrS5VMoN39meJbeQcOW8NE3pxIwTpA35m0MG6lmZobs7GVoQUdELmzqdO7XQ=="; }; dependencies = [ sources."@babel/code-frame-7.21.4" sources."@babel/helper-validator-identifier-7.19.1" sources."@babel/highlight-7.18.6" - sources."@csstools/css-parser-algorithms-2.1.1" + sources."@csstools/css-parser-algorithms-2.2.0" sources."@csstools/css-tokenizer-2.1.1" - sources."@csstools/media-query-list-parser-2.0.4" + sources."@csstools/media-query-list-parser-2.1.0" sources."@csstools/selector-specificity-2.2.0" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" @@ -137575,10 +137007,10 @@ in sources."@babel/helper-validator-option-7.21.0" sources."@babel/helpers-7.22.3" sources."@babel/highlight-7.18.6" - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/template-7.21.9" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" (sources."@cspotcode/source-map-support-0.8.1" // { dependencies = [ sources."@jridgewell/trace-mapping-0.3.9" @@ -137592,19 +137024,19 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" + sources."@swc/core-1.3.61" + sources."@swc/core-darwin-arm64-1.3.61" + sources."@swc/core-darwin-x64-1.3.61" + sources."@swc/core-linux-arm-gnueabihf-1.3.61" + sources."@swc/core-linux-arm64-gnu-1.3.61" + sources."@swc/core-linux-arm64-musl-1.3.61" + sources."@swc/core-linux-x64-gnu-1.3.61" + sources."@swc/core-linux-x64-musl-1.3.61" + sources."@swc/core-win32-arm64-msvc-1.3.61" + sources."@swc/core-win32-ia32-msvc-1.3.61" + sources."@swc/core-win32-x64-msvc-1.3.61" sources."@swc/helpers-0.5.1" - sources."@swc/wasm-1.3.60" + sources."@swc/wasm-1.3.62" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" @@ -137629,11 +137061,11 @@ in sources."binary-extensions-2.2.0" sources."brace-expansion-1.1.11" sources."braces-3.0.2" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."buffer-crc32-0.2.13" sources."call-bind-1.0.2" sources."callsites-3.1.0" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."chalk-2.4.2" sources."character-parser-2.2.0" sources."chokidar-3.5.3" @@ -137655,7 +137087,7 @@ in sources."detect-indent-6.1.0" sources."diff-4.0.2" sources."doctypes-1.1.0" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."errno-0.1.8" sources."es-get-iterator-1.1.3" sources."es6-promise-3.3.1" @@ -137828,8 +137260,8 @@ in sources."to-regex-range-5.0.1" sources."token-stream-1.0.0" sources."ts-node-10.9.1" - sources."tslib-2.5.2" - sources."typescript-5.0.4" + sources."tslib-2.5.3" + sources."typescript-5.1.3" sources."update-browserslist-db-1.0.11" sources."v8-compile-cache-lib-3.0.1" sources."void-elements-3.1.0" @@ -137879,10 +137311,10 @@ in sources."@babel/helper-validator-option-7.21.0" sources."@babel/helpers-7.22.3" sources."@babel/highlight-7.18.6" - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/template-7.21.9" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" (sources."@cspotcode/source-map-support-0.8.1" // { dependencies = [ sources."@jridgewell/trace-mapping-0.3.9" @@ -137899,19 +137331,19 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" + sources."@swc/core-1.3.61" + sources."@swc/core-darwin-arm64-1.3.61" + sources."@swc/core-darwin-x64-1.3.61" + sources."@swc/core-linux-arm-gnueabihf-1.3.61" + sources."@swc/core-linux-arm64-gnu-1.3.61" + sources."@swc/core-linux-arm64-musl-1.3.61" + sources."@swc/core-linux-x64-gnu-1.3.61" + sources."@swc/core-linux-x64-musl-1.3.61" + sources."@swc/core-win32-arm64-msvc-1.3.61" + sources."@swc/core-win32-ia32-msvc-1.3.61" + sources."@swc/core-win32-x64-msvc-1.3.61" sources."@swc/helpers-0.5.1" - sources."@swc/wasm-1.3.60" + sources."@swc/wasm-1.3.62" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" @@ -137937,10 +137369,10 @@ in sources."binary-extensions-2.2.0" sources."brace-expansion-1.1.11" sources."braces-3.0.2" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."buffer-crc32-0.2.13" sources."call-bind-1.0.2" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."chalk-2.4.2" sources."character-parser-2.2.0" sources."chokidar-3.5.3" @@ -137959,7 +137391,7 @@ in sources."detect-indent-6.1.0" sources."diff-4.0.2" sources."doctypes-1.1.0" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."emmet-2.4.4" sources."errno-0.1.8" sources."es6-promise-3.3.1" @@ -138097,8 +137529,8 @@ in sources."to-regex-range-5.0.1" sources."token-stream-1.0.0" sources."ts-node-10.9.1" - sources."tslib-2.5.2" - sources."typescript-5.0.4" + sources."tslib-2.5.3" + sources."typescript-5.1.3" sources."update-browserslist-db-1.0.11" sources."v8-compile-cache-lib-3.0.1" sources."void-elements-3.1.0" @@ -138107,9 +137539,8 @@ in sources."vscode-languageserver-types-3.17.3" ]; }) - (sources."vscode-html-languageservice-5.0.5" // { + (sources."vscode-html-languageservice-5.0.6" // { dependencies = [ - sources."@vscode/l10n-0.0.13" sources."vscode-languageserver-types-3.17.3" ]; }) @@ -138856,19 +138287,19 @@ in sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" + sources."@swc/core-1.3.61" + sources."@swc/core-darwin-arm64-1.3.61" + sources."@swc/core-darwin-x64-1.3.61" + sources."@swc/core-linux-arm-gnueabihf-1.3.61" + sources."@swc/core-linux-arm64-gnu-1.3.61" + sources."@swc/core-linux-arm64-musl-1.3.61" + sources."@swc/core-linux-x64-gnu-1.3.61" + sources."@swc/core-linux-x64-musl-1.3.61" + sources."@swc/core-win32-arm64-msvc-1.3.61" + sources."@swc/core-win32-ia32-msvc-1.3.61" + sources."@swc/core-win32-x64-msvc-1.3.61" sources."@swc/helpers-0.5.1" - sources."@swc/wasm-1.3.60" + sources."@swc/wasm-1.3.62" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" @@ -138960,8 +138391,8 @@ in sources."arg-4.1.3" ]; }) - sources."tslib-2.5.2" - sources."typescript-5.0.4" + sources."tslib-2.5.3" + sources."typescript-5.1.3" sources."util-deprecate-1.0.2" sources."v8-compile-cache-lib-3.0.1" sources."wrappy-1.0.2" @@ -139306,10 +138737,10 @@ in terser = nodeEnv.buildNodePackage { name = "terser"; packageName = "terser"; - version = "5.17.6"; + version = "5.17.7"; src = fetchurl { - url = "https://registry.npmjs.org/terser/-/terser-5.17.6.tgz"; - sha512 = "V8QHcs8YuyLkLHsJO5ucyff1ykrLVsR4dNnS//L5Y3NiSXpbK1J+WMVUs67eI0KTxs9JtHhgEQpXQVHlHI92DQ=="; + url = "https://registry.npmjs.org/terser/-/terser-5.17.7.tgz"; + sha512 = "/bi0Zm2C6VAexlGgLlVxA0P2lru/sdLyfCVaRMfKVo9nWxbmz7f/sD8VPybPeSUJaJcwmCJis9pBIhcVcG1QcQ=="; }; dependencies = [ sources."@jridgewell/gen-mapping-0.3.3" @@ -140357,8 +139788,8 @@ in sources."ms-2.1.2" ]; }) - sources."@eslint/js-8.41.0" - (sources."@humanwhocodes/config-array-0.11.8" // { + sources."@eslint/js-8.42.0" + (sources."@humanwhocodes/config-array-0.11.10" // { dependencies = [ sources."debug-4.3.4" sources."ms-2.1.2" @@ -140414,7 +139845,7 @@ in sources."es-shim-unscopables-1.0.0" sources."es-to-primitive-1.2.1" sources."escape-string-regexp-4.0.0" - (sources."eslint-8.41.0" // { + (sources."eslint-8.42.0" // { dependencies = [ sources."debug-4.3.4" sources."doctrine-3.0.0" @@ -140936,7 +140367,7 @@ in ]; }) sources."socket.io-adapter-2.5.2" - (sources."socket.io-parser-4.2.3" // { + (sources."socket.io-parser-4.2.4" // { dependencies = [ sources."debug-4.3.4" sources."ms-2.1.2" @@ -140972,7 +140403,7 @@ in sources."token-types-4.2.1" sources."tr46-0.0.3" sources."trim-repeated-1.0.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."type-is-1.6.18" sources."ua-parser-js-1.0.33" sources."uc.micro-1.0.6" @@ -143024,10 +142455,10 @@ in three = nodeEnv.buildNodePackage { name = "three"; packageName = "three"; - version = "0.152.2"; + version = "0.153.0"; src = fetchurl { - url = "https://registry.npmjs.org/three/-/three-0.152.2.tgz"; - sha512 = "Ff9zIpSfkkqcBcpdiFo2f35vA9ZucO+N8TNacJOqaEE6DrB0eufItVMib8bK8Pcju/ZNT6a7blE1GhTpkdsILw=="; + url = "https://registry.npmjs.org/three/-/three-0.153.0.tgz"; + sha512 = "OCP2/uQR6GcDpSLnJt/3a4mdS0kNWcbfUXIwLoEMgLzEUIVIYsSDwskpmOii/AkDM+BBwrl6+CKgrjX9+E2aWg=="; }; buildInputs = globalBuildInputs; meta = { @@ -143073,7 +142504,7 @@ in sources."@types/keyv-3.1.4" sources."@types/node-20.2.5" sources."@types/responselike-1.0.0" - sources."@xmldom/xmldom-0.8.7" + sources."@xmldom/xmldom-0.8.8" sources."ajv-6.12.6" sources."asn1-0.2.6" sources."assert-plus-1.0.0" @@ -143247,7 +142678,7 @@ in sources."supports-color-2.0.0" sources."temp-0.8.4" sources."tslib-1.14.1" - sources."typescript-5.0.4" + sources."typescript-5.1.3" sources."wordwrap-0.0.3" sources."wrappy-1.0.2" ]; @@ -143274,19 +142705,19 @@ in sources."@jridgewell/resolve-uri-3.1.1" sources."@jridgewell/sourcemap-codec-1.4.15" sources."@jridgewell/trace-mapping-0.3.9" - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" + sources."@swc/core-1.3.61" + sources."@swc/core-darwin-arm64-1.3.61" + sources."@swc/core-darwin-x64-1.3.61" + sources."@swc/core-linux-arm-gnueabihf-1.3.61" + sources."@swc/core-linux-arm64-gnu-1.3.61" + sources."@swc/core-linux-arm64-musl-1.3.61" + sources."@swc/core-linux-x64-gnu-1.3.61" + sources."@swc/core-linux-x64-musl-1.3.61" + sources."@swc/core-win32-arm64-msvc-1.3.61" + sources."@swc/core-win32-ia32-msvc-1.3.61" + sources."@swc/core-win32-x64-msvc-1.3.61" sources."@swc/helpers-0.5.1" - sources."@swc/wasm-1.3.60" + sources."@swc/wasm-1.3.62" sources."@tsconfig/node10-1.0.9" sources."@tsconfig/node12-1.0.11" sources."@tsconfig/node14-1.0.3" @@ -143298,8 +142729,8 @@ in sources."create-require-1.1.1" sources."diff-4.0.2" sources."make-error-1.3.6" - sources."tslib-2.5.2" - sources."typescript-5.0.4" + sources."tslib-2.5.3" + sources."typescript-5.1.3" sources."v8-compile-cache-lib-3.0.1" sources."yn-3.1.1" ]; @@ -143337,10 +142768,10 @@ in typescript = nodeEnv.buildNodePackage { name = "typescript"; packageName = "typescript"; - version = "5.0.4"; + version = "5.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/typescript/-/typescript-5.0.4.tgz"; - sha512 = "cW9T5W9xY37cc+jfEnaUvX91foxtHkza3Nw3wkoF4sSlKn0MONdkdEndig/qPBWXNkmplh3NzayQzCiHM4/hqw=="; + url = "https://registry.npmjs.org/typescript/-/typescript-5.1.3.tgz"; + sha512 = "XH627E9vkeqhlZFQuL+UsyAXEnibT0kWR2FWONlr4sTjvxyJYnyefgrkyECLzM5NenmKzRAy2rR/OlYLA1HkZw=="; }; buildInputs = globalBuildInputs; meta = { @@ -143420,7 +142851,7 @@ in sources."@pnpm/network.ca-file-1.0.2" sources."@pnpm/npm-conf-2.2.0" sources."@primer/octicons-17.10.2" - sources."@sindresorhus/is-5.3.0" + sources."@sindresorhus/is-5.4.0" sources."@socket.io/component-emitter-3.1.0" sources."@szmarczak/http-timer-5.0.1" sources."@types/cookie-0.4.1" @@ -143536,7 +142967,7 @@ in sources."defined-1.0.1" sources."depd-2.0.0" sources."deps-sort-2.0.1" - sources."des.js-1.0.1" + sources."des.js-1.1.0" sources."destroy-1.2.0" sources."detective-5.2.1" sources."diff-5.1.0" @@ -143798,7 +143229,7 @@ in ]; }) sources."socket.io-adapter-2.4.0" - (sources."socket.io-parser-4.2.3" // { + (sources."socket.io-parser-4.2.4" // { dependencies = [ sources."debug-4.3.4" sources."ms-2.1.2" @@ -143912,7 +143343,7 @@ in sources."@babel/helper-validator-identifier-7.19.1" sources."@babel/highlight-7.18.6" sources."@isaacs/cliui-8.0.2" - sources."@npmcli/config-6.1.7" + sources."@npmcli/config-6.2.0" sources."@npmcli/map-workspaces-3.0.4" sources."@npmcli/name-from-folder-2.0.0" sources."@pkgjs/parseargs-0.11.0" @@ -143969,7 +143400,7 @@ in sources."lines-and-columns-2.0.3" sources."load-plugin-5.1.0" sources."locate-path-7.2.0" - sources."lru-cache-9.1.1" + sources."lru-cache-9.1.2" sources."minimatch-9.0.1" sources."minipass-6.0.2" sources."ms-2.1.2" @@ -144094,7 +143525,7 @@ in sources."commander-7.2.0" sources."concat-map-0.0.1" sources."console-control-strings-1.1.0" - sources."d3-array-3.2.3" + sources."d3-array-3.2.4" sources."d3-color-3.1.0" sources."d3-delaunay-6.0.4" sources."d3-dispatch-3.0.1" @@ -144255,7 +143686,7 @@ in sources."color-convert-2.0.1" sources."color-name-1.1.4" sources."commander-7.2.0" - sources."d3-array-3.2.3" + sources."d3-array-3.2.4" sources."d3-color-3.1.0" sources."d3-delaunay-6.0.4" sources."d3-dispatch-3.0.1" @@ -144297,7 +143728,7 @@ in ]; }) sources."tr46-0.0.3" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."vega-5.25.0" sources."vega-canvas-1.2.7" sources."vega-crossfilter-4.1.1" @@ -144352,10 +143783,10 @@ in vercel = nodeEnv.buildNodePackage { name = "vercel"; packageName = "vercel"; - version = "30.0.0"; + version = "30.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/vercel/-/vercel-30.0.0.tgz"; - sha512 = "JxpE29jxVTjnBsILc0E4umj6cLFq8H6AsSowGiPz/dxP0lJLwX3QPgDn+qd6GWIc4QDNEnvvkqAJ+7pSKTO04A=="; + url = "https://registry.npmjs.org/vercel/-/vercel-30.1.2.tgz"; + sha512 = "DjN8ICpD1QkU3LvG3In2S68J7CgYbfspbqaX/20IBsWaJQAejTnZsFCv6/21zPFSWeIHzihtnmzr6OGTZ6F+Sg=="; }; dependencies = [ sources."@adobe/css-tools-4.2.0" @@ -144422,10 +143853,10 @@ in sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.22.3" + sources."@babel/parser-7.22.4" sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.18.6" sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.22.3" - sources."@babel/plugin-proposal-private-property-in-object-7.21.0" + sources."@babel/plugin-proposal-private-property-in-object-7.21.10" sources."@babel/plugin-proposal-unicode-property-regex-7.18.6" sources."@babel/plugin-syntax-async-generators-7.8.4" sources."@babel/plugin-syntax-class-properties-7.12.13" @@ -144496,7 +143927,7 @@ in sources."@babel/plugin-transform-unicode-property-regex-7.22.3" sources."@babel/plugin-transform-unicode-regex-7.18.6" sources."@babel/plugin-transform-unicode-sets-regex-7.22.3" - (sources."@babel/preset-env-7.22.2" // { + (sources."@babel/preset-env-7.22.4" // { dependencies = [ sources."semver-6.3.0" ]; @@ -144506,8 +143937,8 @@ in sources."@babel/regjsgen-0.8.0" sources."@babel/runtime-7.22.3" sources."@babel/template-7.21.9" - sources."@babel/traverse-7.22.1" - sources."@babel/types-7.22.3" + sources."@babel/traverse-7.22.4" + sources."@babel/types-7.22.4" sources."@cspotcode/source-map-support-0.8.1" sources."@edge-runtime/format-2.0.1" sources."@edge-runtime/primitives-2.0.0" @@ -144592,19 +144023,19 @@ in sources."@rollup/pluginutils-4.2.1" sources."@sinclair/typebox-0.25.24" sources."@sindresorhus/is-4.6.0" - sources."@swc/core-1.3.60" - sources."@swc/core-darwin-arm64-1.3.60" - sources."@swc/core-darwin-x64-1.3.60" - sources."@swc/core-linux-arm-gnueabihf-1.3.60" - sources."@swc/core-linux-arm64-gnu-1.3.60" - sources."@swc/core-linux-arm64-musl-1.3.60" - sources."@swc/core-linux-x64-gnu-1.3.60" - sources."@swc/core-linux-x64-musl-1.3.60" - sources."@swc/core-win32-arm64-msvc-1.3.60" - sources."@swc/core-win32-ia32-msvc-1.3.60" - sources."@swc/core-win32-x64-msvc-1.3.60" + sources."@swc/core-1.3.61" + sources."@swc/core-darwin-arm64-1.3.61" + sources."@swc/core-darwin-x64-1.3.61" + sources."@swc/core-linux-arm-gnueabihf-1.3.61" + sources."@swc/core-linux-arm64-gnu-1.3.61" + sources."@swc/core-linux-arm64-musl-1.3.61" + sources."@swc/core-linux-x64-gnu-1.3.61" + sources."@swc/core-linux-x64-musl-1.3.61" + sources."@swc/core-win32-arm64-msvc-1.3.61" + sources."@swc/core-win32-ia32-msvc-1.3.61" + sources."@swc/core-win32-x64-msvc-1.3.61" sources."@swc/helpers-0.5.1" - sources."@swc/wasm-1.3.60" + sources."@swc/wasm-1.3.62" sources."@szmarczak/http-timer-4.0.6" sources."@tootallnate/once-1.1.2" sources."@ts-morph/common-0.11.1" @@ -144638,26 +144069,26 @@ in ]; }) sources."@vanilla-extract/private-1.0.3" - sources."@vercel/build-utils-6.7.3" - sources."@vercel/error-utils-1.0.8" + sources."@vercel/build-utils-6.7.5" + sources."@vercel/error-utils-1.0.10" (sources."@vercel/gatsby-plugin-vercel-analytics-1.0.10" // { dependencies = [ sources."@babel/runtime-7.12.1" ]; }) - (sources."@vercel/gatsby-plugin-vercel-builder-1.3.5" // { + (sources."@vercel/gatsby-plugin-vercel-builder-1.3.7" // { dependencies = [ sources."fs-extra-11.1.0" ]; }) sources."@vercel/go-2.5.1" sources."@vercel/hydrogen-0.0.64" - sources."@vercel/next-3.8.5" + sources."@vercel/next-3.8.6" sources."@vercel/nft-0.22.5" - sources."@vercel/node-2.14.3" + sources."@vercel/node-2.14.5" sources."@vercel/python-3.1.60" sources."@vercel/redwood-1.1.15" - (sources."@vercel/remix-builder-1.8.10" // { + (sources."@vercel/remix-builder-1.8.12" // { dependencies = [ sources."semver-7.3.8" ]; @@ -144670,7 +144101,7 @@ in ]; }) sources."@vercel/ruby-1.3.76" - sources."@vercel/static-build-1.3.32" + sources."@vercel/static-build-1.3.34" sources."@vercel/static-config-2.0.17" sources."@web3-storage/multipart-parser-1.0.0" sources."@zxing/text-encoding-0.9.0" @@ -144695,7 +144126,7 @@ in sources."array-flatten-1.1.1" sources."array-union-2.1.0" sources."ast-types-0.13.4" - sources."astring-1.8.5" + sources."astring-1.8.6" sources."async-listen-3.0.0" sources."async-sema-3.1.1" sources."asynckit-0.4.0" @@ -144725,7 +144156,7 @@ in sources."brace-expansion-1.1.11" sources."braces-3.0.2" sources."browserify-zlib-0.1.4" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."buffer-5.7.1" sources."buffer-from-1.1.2" sources."bufferutil-4.0.7" @@ -144744,7 +144175,7 @@ in ]; }) sources."call-bind-1.0.2" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" (sources."chalk-4.1.2" // { dependencies = [ sources."ansi-styles-4.3.0" @@ -144824,7 +144255,7 @@ in sources."detect-newline-3.1.0" sources."diff-4.0.2" sources."dir-glob-3.0.1" - sources."dotenv-16.0.3" + sources."dotenv-16.1.3" (sources."duplexify-3.7.1" // { dependencies = [ sources."readable-stream-2.3.8" @@ -144840,7 +144271,7 @@ in ]; }) sources."ee-first-1.1.1" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."emoji-regex-8.0.0" sources."emojis-list-3.0.0" sources."encodeurl-1.0.2" @@ -145075,7 +144506,7 @@ in sources."make-error-1.3.6" sources."markdown-extensions-1.1.1" sources."mdast-util-definitions-5.1.2" - sources."mdast-util-from-markdown-1.3.0" + sources."mdast-util-from-markdown-1.3.1" sources."mdast-util-frontmatter-1.0.1" sources."mdast-util-mdx-1.1.0" (sources."mdast-util-mdx-expression-1.3.2" // { @@ -145100,39 +144531,39 @@ in sources."merge-stream-2.0.0" sources."merge2-1.4.1" sources."methods-1.1.2" - sources."micromark-3.1.0" - sources."micromark-core-commonmark-1.0.6" - sources."micromark-extension-frontmatter-1.1.0" - sources."micromark-extension-mdx-expression-1.0.5" - (sources."micromark-extension-mdx-jsx-1.0.4" // { + sources."micromark-3.2.0" + sources."micromark-core-commonmark-1.1.0" + sources."micromark-extension-frontmatter-1.1.1" + sources."micromark-extension-mdx-expression-1.0.8" + (sources."micromark-extension-mdx-jsx-1.0.5" // { dependencies = [ sources."estree-util-is-identifier-name-2.1.0" ]; }) sources."micromark-extension-mdx-md-1.0.1" sources."micromark-extension-mdxjs-1.0.1" - sources."micromark-extension-mdxjs-esm-1.0.4" - sources."micromark-factory-destination-1.0.0" - sources."micromark-factory-label-1.0.2" - sources."micromark-factory-mdx-expression-1.0.8" - sources."micromark-factory-space-1.0.0" - sources."micromark-factory-title-1.0.2" - sources."micromark-factory-whitespace-1.0.0" - sources."micromark-util-character-1.1.0" - sources."micromark-util-chunked-1.0.0" - sources."micromark-util-classify-character-1.0.0" - sources."micromark-util-combine-extensions-1.0.0" - sources."micromark-util-decode-numeric-character-reference-1.0.0" - sources."micromark-util-decode-string-1.0.2" - sources."micromark-util-encode-1.0.1" + sources."micromark-extension-mdxjs-esm-1.0.5" + sources."micromark-factory-destination-1.1.0" + sources."micromark-factory-label-1.1.0" + sources."micromark-factory-mdx-expression-1.0.9" + sources."micromark-factory-space-1.1.0" + sources."micromark-factory-title-1.1.0" + sources."micromark-factory-whitespace-1.1.0" + sources."micromark-util-character-1.2.0" + sources."micromark-util-chunked-1.1.0" + sources."micromark-util-classify-character-1.1.0" + sources."micromark-util-combine-extensions-1.1.0" + sources."micromark-util-decode-numeric-character-reference-1.1.0" + sources."micromark-util-decode-string-1.1.0" + sources."micromark-util-encode-1.1.0" sources."micromark-util-events-to-acorn-1.2.3" - sources."micromark-util-html-tag-name-1.1.0" - sources."micromark-util-normalize-identifier-1.0.0" - sources."micromark-util-resolve-all-1.0.0" - sources."micromark-util-sanitize-uri-1.1.0" - sources."micromark-util-subtokenize-1.0.2" - sources."micromark-util-symbol-1.0.1" - sources."micromark-util-types-1.0.2" + sources."micromark-util-html-tag-name-1.2.0" + sources."micromark-util-normalize-identifier-1.1.0" + sources."micromark-util-resolve-all-1.1.0" + sources."micromark-util-sanitize-uri-1.2.0" + sources."micromark-util-subtokenize-1.1.0" + sources."micromark-util-symbol-1.1.0" + sources."micromark-util-types-1.1.0" sources."micromatch-4.0.5" sources."mime-1.6.0" sources."mime-db-1.52.0" @@ -145221,7 +144652,7 @@ in sources."path-parse-1.0.7" sources."path-to-regexp-6.2.1" sources."path-type-4.0.0" - sources."pathe-1.1.0" + sources."pathe-1.1.1" sources."peek-stream-1.1.3" (sources."periscopic-3.1.0" // { dependencies = [ @@ -145380,7 +144811,7 @@ in ]; }) sources."tar-stream-2.2.0" - sources."terser-5.17.6" + sources."terser-5.17.7" sources."through-2.3.8" (sources."through2-2.0.5" // { dependencies = [ @@ -145401,7 +144832,7 @@ in sources."ts-node-10.9.1" sources."ts-toolbelt-6.15.5" sources."tsconfig-paths-4.2.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."type-check-0.3.2" sources."type-fest-0.21.3" sources."type-is-1.6.18" @@ -145560,8 +144991,8 @@ in sources."@eslint-community/eslint-utils-4.4.0" sources."@eslint-community/regexpp-4.5.1" sources."@eslint/eslintrc-2.0.3" - sources."@eslint/js-8.41.0" - sources."@humanwhocodes/config-array-0.11.8" + sources."@eslint/js-8.42.0" + sources."@humanwhocodes/config-array-0.11.10" sources."@humanwhocodes/module-importer-1.0.1" sources."@humanwhocodes/object-schema-1.2.1" sources."@nodelib/fs.scandir-2.1.5" @@ -145592,7 +145023,7 @@ in sources."diff-4.0.2" sources."doctrine-3.0.0" sources."escape-string-regexp-4.0.0" - sources."eslint-8.41.0" + sources."eslint-8.42.0" sources."eslint-plugin-vue-9.14.1" sources."eslint-scope-7.2.0" sources."eslint-visitor-keys-3.4.1" @@ -145905,7 +145336,11 @@ in sources."@vscode/l10n-0.0.14" ]; }) - sources."vscode-html-languageservice-5.0.5" + (sources."vscode-html-languageservice-5.0.6" // { + dependencies = [ + sources."@vscode/l10n-0.0.14" + ]; + }) sources."vscode-json-languageservice-5.3.5" sources."vscode-jsonrpc-8.1.0" sources."vscode-languageserver-8.1.0" @@ -145943,6 +145378,7 @@ in sources."ansi-escapes-3.2.0" sources."ansi-regex-3.0.1" sources."ansi-styles-3.2.1" + sources."anymatch-3.1.3" sources."argparse-1.0.10" sources."array-differ-1.0.0" sources."array-union-1.0.2" @@ -145957,6 +145393,7 @@ in sources."balanced-match-1.0.2" sources."base64-js-1.5.1" sources."bcrypt-pbkdf-1.0.2" + sources."binary-extensions-2.2.0" sources."bl-1.2.3" sources."bluebird-3.7.2" sources."brace-expansion-1.1.11" @@ -145972,6 +145409,7 @@ in sources."caw-2.0.1" sources."chalk-2.4.2" sources."chardet-0.7.0" + sources."chokidar-3.5.3" sources."cli-cursor-2.1.0" sources."cli-spinners-1.3.1" sources."cli-width-2.2.1" @@ -145986,7 +145424,6 @@ in sources."consolidate-0.14.5" sources."core-util-is-1.0.3" sources."create-error-class-3.0.2" - sources."cross-spawn-7.0.3" sources."dashdash-1.14.1" sources."debug-4.3.4" sources."decompress-4.2.1" @@ -146027,11 +145464,13 @@ in sources."form-data-2.3.3" sources."fs-constants-1.0.0" sources."fs.realpath-1.0.0" + sources."fsevents-2.3.2" sources."get-proxy-2.1.0" sources."get-stream-3.0.0" sources."getpass-0.1.7" sources."git-clone-0.1.0" sources."glob-7.2.3" + sources."glob-parent-5.1.2" sources."got-6.7.1" sources."graceful-fs-4.2.11" sources."gray-matter-4.0.3" @@ -146048,8 +145487,11 @@ in sources."inherits-2.0.4" sources."ini-1.3.8" sources."inquirer-6.5.2" + sources."is-binary-path-2.1.0" sources."is-extendable-0.1.1" + sources."is-extglob-2.1.1" sources."is-fullwidth-code-point-2.0.0" + sources."is-glob-4.0.3" sources."is-natural-number-4.0.1" sources."is-number-7.0.0" sources."is-object-1.0.2" @@ -146059,7 +145501,6 @@ in sources."is-typedarray-1.0.0" sources."is-utf8-0.2.1" sources."isarray-1.0.0" - sources."isexe-2.0.0" sources."isstream-0.1.2" sources."isurl-1.0.0" sources."js-yaml-3.14.1" @@ -146070,6 +145511,7 @@ in sources."jsprim-1.4.2" sources."kind-of-6.0.3" sources."lodash-4.17.21" + sources."lodash.clonedeepwith-4.5.0" sources."log-symbols-2.2.0" sources."lowercase-keys-1.0.1" (sources."make-dir-1.3.0" // { @@ -146077,10 +145519,9 @@ in sources."pify-3.0.0" ]; }) - (sources."metalsmith-2.5.1" // { + (sources."metalsmith-2.6.0" // { dependencies = [ - sources."commander-6.2.1" - sources."rimraf-3.0.2" + sources."commander-10.0.1" ]; }) sources."micromatch-4.0.5" @@ -146094,6 +145535,7 @@ in sources."multimatch-2.1.0" sources."mute-stream-0.0.7" sources."neo-async-2.6.2" + sources."normalize-path-3.0.0" (sources."npm-conf-1.1.3" // { dependencies = [ sources."pify-3.0.0" @@ -146107,7 +145549,6 @@ in sources."os-homedir-1.0.2" sources."os-tmpdir-1.0.2" sources."path-is-absolute-1.0.1" - sources."path-key-3.1.1" sources."pend-1.2.0" sources."performance-now-2.1.0" sources."picomatch-2.3.1" @@ -146126,6 +145567,7 @@ in sources."safe-buffer-5.1.2" ]; }) + sources."readdirp-3.6.0" sources."request-2.88.2" sources."restore-cursor-2.0.0" sources."rimraf-2.7.1" @@ -146136,8 +145578,6 @@ in sources."section-matter-1.0.0" sources."seek-bzip-1.0.6" sources."semver-5.7.1" - sources."shebang-command-2.0.0" - sources."shebang-regex-3.0.0" sources."signal-exit-3.0.7" sources."source-map-0.6.1" sources."sprintf-js-1.0.3" @@ -146191,7 +145631,6 @@ in ]; }) sources."ware-1.3.0" - sources."which-2.0.2" sources."wordwrap-1.0.0" sources."wrap-fn-0.1.5" sources."wrappy-1.0.2" @@ -146632,7 +146071,7 @@ in sources."isarray-1.0.0" sources."isexe-2.0.0" sources."isobject-3.0.1" - (sources."js-beautify-1.14.7" // { + (sources."js-beautify-1.14.8" // { dependencies = [ sources."brace-expansion-2.0.1" sources."glob-8.1.0" @@ -147373,7 +146812,7 @@ in }) sources."@eslint/js-8.36.0" sources."@fluent/syntax-0.19.0" - sources."@humanwhocodes/config-array-0.11.8" + sources."@humanwhocodes/config-array-0.11.10" sources."@humanwhocodes/module-importer-1.0.1" sources."@humanwhocodes/object-schema-1.2.1" sources."@mdn/browser-compat-data-5.2.42" @@ -147387,7 +146826,7 @@ in ]; }) sources."@pnpm/npm-conf-2.2.0" - sources."@sindresorhus/is-5.3.0" + sources."@sindresorhus/is-5.4.0" sources."@szmarczak/http-timer-5.0.1" sources."@types/http-cache-semantics-4.0.1" sources."@types/minimatch-3.0.5" @@ -147750,7 +147189,7 @@ in sources."lodash-4.17.21" sources."lodash.merge-4.6.2" sources."lowercase-keys-3.0.0" - sources."lru-cache-9.1.1" + sources."lru-cache-9.1.2" sources."make-error-1.3.6" sources."map-age-cleaner-0.1.3" sources."marky-1.2.5" @@ -148039,10 +147478,10 @@ in webpack = nodeEnv.buildNodePackage { name = "webpack"; packageName = "webpack"; - version = "5.84.1"; + version = "5.85.0"; src = fetchurl { - url = "https://registry.npmjs.org/webpack/-/webpack-5.84.1.tgz"; - sha512 = "ZP4qaZ7vVn/K8WN/p990SGATmrL1qg4heP/MrVneczYtpDGJWlrgZv55vxaV2ul885Kz+25MP2kSXkPe3LZfmg=="; + url = "https://registry.npmjs.org/webpack/-/webpack-5.85.0.tgz"; + sha512 = "7gazTiYqwo5OSqwH1tigLDL2r3qDeP2dOKYgd+LlXpsUMqDTklg6tOghexqky0/+6QY38kb/R/uRPUleuL43zg=="; }; dependencies = [ sources."@jridgewell/gen-mapping-0.3.3" @@ -148077,12 +147516,12 @@ in sources."acorn-import-assertions-1.9.0" sources."ajv-6.12.6" sources."ajv-keywords-3.5.2" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."buffer-from-1.1.2" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."chrome-trace-event-1.0.3" sources."commander-2.20.3" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."enhanced-resolve-5.14.1" sources."es-module-lexer-1.2.1" sources."escalade-3.1.1" @@ -148118,12 +147557,12 @@ in sources."source-map-support-0.5.21" sources."supports-color-8.1.1" sources."tapable-2.2.1" - sources."terser-5.17.6" + sources."terser-5.17.7" sources."terser-webpack-plugin-5.3.9" sources."update-browserslist-db-1.0.11" sources."uri-js-4.4.1" sources."watchpack-2.4.0" - sources."webpack-5.84.1" + sources."webpack-5.85.0" sources."webpack-sources-3.2.3" ]; buildInputs = globalBuildInputs; @@ -148181,15 +147620,15 @@ in sources."acorn-import-assertions-1.9.0" sources."ajv-6.12.6" sources."ajv-keywords-3.5.2" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."buffer-from-1.1.2" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."chrome-trace-event-1.0.3" sources."clone-deep-4.0.1" sources."colorette-2.0.20" sources."commander-10.0.1" sources."cross-spawn-7.0.3" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."enhanced-resolve-5.14.1" sources."envinfo-7.8.1" sources."es-module-lexer-1.2.1" @@ -148253,7 +147692,7 @@ in sources."supports-color-8.1.1" sources."supports-preserve-symlinks-flag-1.0.0" sources."tapable-2.2.1" - (sources."terser-5.17.6" // { + (sources."terser-5.17.7" // { dependencies = [ sources."commander-2.20.3" ]; @@ -148262,7 +147701,7 @@ in sources."update-browserslist-db-1.0.11" sources."uri-js-4.4.1" sources."watchpack-2.4.0" - sources."webpack-5.84.1" + sources."webpack-5.85.0" sources."webpack-cli-5.1.1" sources."webpack-merge-5.9.0" sources."webpack-sources-3.2.3" @@ -148353,12 +147792,12 @@ in sources."bonjour-service-1.1.1" sources."brace-expansion-1.1.11" sources."braces-3.0.2" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."buffer-from-1.1.2" sources."bufferutil-4.0.7" sources."bytes-3.0.0" sources."call-bind-1.0.2" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."chokidar-3.5.3" sources."chrome-trace-event-1.0.3" sources."colorette-2.0.20" @@ -148386,7 +147825,7 @@ in sources."dns-equal-1.0.0" sources."dns-packet-5.6.0" sources."ee-first-1.1.1" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."encodeurl-1.0.2" sources."enhanced-resolve-5.14.1" sources."es-module-lexer-1.2.1" @@ -148417,7 +147856,7 @@ in sources."follow-redirects-1.15.2" sources."forwarded-0.2.0" sources."fresh-0.5.2" - sources."fs-monkey-1.0.3" + sources."fs-monkey-1.0.4" sources."fs.realpath-1.0.0" sources."fsevents-2.3.2" sources."function-bind-1.1.1" @@ -148447,7 +147886,7 @@ in sources."iconv-lite-0.4.24" sources."inflight-1.0.6" sources."inherits-2.0.4" - sources."ipaddr.js-2.0.1" + sources."ipaddr.js-2.1.0" sources."is-binary-path-2.1.0" sources."is-docker-2.2.1" sources."is-extglob-2.1.1" @@ -148464,7 +147903,7 @@ in sources."launch-editor-2.6.0" sources."loader-runner-4.3.0" sources."media-typer-0.3.0" - sources."memfs-3.5.1" + sources."memfs-3.5.2" sources."merge-descriptors-1.0.1" sources."merge-stream-2.0.0" sources."methods-1.1.2" @@ -148566,7 +148005,7 @@ in sources."strip-final-newline-2.0.0" sources."supports-color-8.1.1" sources."tapable-2.2.1" - sources."terser-5.17.6" + sources."terser-5.17.7" (sources."terser-webpack-plugin-5.3.9" // { dependencies = [ sources."ajv-6.12.6" @@ -148589,7 +148028,7 @@ in sources."vary-1.1.2" sources."watchpack-2.4.0" sources."wbuf-1.7.3" - (sources."webpack-5.84.1" // { + (sources."webpack-5.85.0" // { dependencies = [ sources."ajv-6.12.6" sources."ajv-keywords-3.5.2" @@ -148661,13 +148100,13 @@ in sources."ajv-formats-2.1.1" sources."ajv-keywords-5.1.0" sources."braces-3.0.2" - sources."browserslist-4.21.6" + sources."browserslist-4.21.7" sources."buffer-from-1.1.2" - sources."caniuse-lite-1.0.30001489" + sources."caniuse-lite-1.0.30001492" sources."chrome-trace-event-1.0.3" sources."commander-2.20.3" sources."dir-glob-3.0.1" - sources."electron-to-chromium-1.4.411" + sources."electron-to-chromium-1.4.419" sources."enhanced-resolve-5.14.1" sources."es-module-lexer-1.2.1" sources."escalade-3.1.1" @@ -148726,7 +148165,7 @@ in sources."source-map-support-0.5.21" sources."supports-color-8.1.1" sources."tapable-2.2.1" - sources."terser-5.17.6" + sources."terser-5.17.7" (sources."terser-webpack-plugin-5.3.9" // { dependencies = [ sources."ajv-6.12.6" @@ -148739,7 +148178,7 @@ in sources."update-browserslist-db-1.0.11" sources."uri-js-4.4.1" sources."watchpack-2.4.0" - (sources."webpack-5.84.1" // { + (sources."webpack-5.85.0" // { dependencies = [ sources."ajv-6.12.6" sources."ajv-keywords-3.5.2" @@ -148930,7 +148369,7 @@ in sources."inquirer-8.2.5" sources."ip-1.1.8" sources."ip-set-2.1.0" - sources."ipaddr.js-2.0.1" + sources."ipaddr.js-2.1.0" sources."is-ascii-1.0.0" sources."is-docker-2.2.1" sources."is-file-1.0.0" @@ -149107,7 +148546,7 @@ in ]; }) sources."torrent-piece-2.0.1" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."type-fest-0.21.3" sources."typedarray-0.0.6" sources."uint64be-2.0.2" @@ -149343,7 +148782,7 @@ in sources."mustache-4.2.0" sources."nanoid-3.3.6" sources."napi-build-utils-1.0.2" - sources."node-abi-3.40.0" + sources."node-abi-3.43.0" sources."node-forge-1.3.1" sources."node-gyp-build-4.6.0" sources."normalize-path-3.0.0" @@ -149379,7 +148818,7 @@ in sources."tar-fs-2.1.1" sources."tar-stream-2.2.0" sources."to-regex-range-5.0.1" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."tunnel-agent-0.6.0" sources."undici-5.22.1" sources."utf-8-validate-6.0.3" @@ -149438,8 +148877,8 @@ in sources."ms-2.1.2" ]; }) - sources."@eslint/js-8.41.0" - (sources."@humanwhocodes/config-array-0.11.8" // { + sources."@eslint/js-8.42.0" + (sources."@humanwhocodes/config-array-0.11.10" // { dependencies = [ sources."debug-4.3.4" sources."ms-2.1.2" @@ -149492,7 +148931,7 @@ in sources."es-shim-unscopables-1.0.0" sources."es-to-primitive-1.2.1" sources."escape-string-regexp-4.0.0" - (sources."eslint-8.41.0" // { + (sources."eslint-8.42.0" // { dependencies = [ sources."debug-4.3.4" sources."doctrine-3.0.0" @@ -149879,6 +149318,7 @@ in sources."@types/responselike-1.0.0" sources."@types/vinyl-2.0.7" sources."abbrev-1.1.1" + sources."abort-controller-3.0.0" (sources."agent-base-6.0.2" // { dependencies = [ sources."debug-4.3.4" @@ -150046,7 +149486,9 @@ in sources."escape-goat-2.1.1" sources."escape-string-regexp-1.0.5" sources."esprima-4.0.1" + sources."event-target-shim-5.0.1" sources."eventemitter3-4.0.7" + sources."events-3.3.0" (sources."execa-1.0.0" // { dependencies = [ sources."cross-spawn-6.0.5" @@ -150496,6 +149938,7 @@ in sources."prepend-http-2.0.0" sources."pretty-bytes-5.6.0" sources."proc-log-1.0.0" + sources."process-0.11.10" sources."process-nextick-args-2.0.1" sources."promise-all-reject-late-1.0.1" sources."promise-call-limit-1.0.2" @@ -150672,7 +150115,7 @@ in sources."to-regex-range-5.0.1" sources."treeverse-1.0.4" sources."trim-newlines-2.0.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."tunnel-0.0.6" (sources."twig-1.16.0" // { dependencies = [ @@ -150758,10 +150201,15 @@ in sources."url-parse-lax-1.0.0" ]; }) - (sources."yeoman-environment-3.18.4" // { + (sources."yeoman-environment-3.19.3" // { dependencies = [ - sources."are-we-there-yet-2.0.0" + (sources."are-we-there-yet-2.0.0" // { + dependencies = [ + sources."readable-stream-3.6.2" + ]; + }) sources."brace-expansion-1.1.11" + sources."buffer-6.0.3" sources."debug-4.3.4" sources."escape-string-regexp-4.0.0" sources."execa-5.1.1" @@ -150778,7 +150226,7 @@ in sources."p-limit-3.1.0" sources."p-locate-5.0.0" sources."path-exists-4.0.0" - sources."readable-stream-3.6.2" + sources."readable-stream-4.4.0" sources."semver-7.5.1" ]; }) @@ -150846,7 +150294,7 @@ in sources."@esm2cjs/form-data-encoder-2.1.4" sources."@esm2cjs/got-12.5.3" sources."@esm2cjs/http-timer-5.0.1" - sources."@esm2cjs/is-5.3.0" + sources."@esm2cjs/is-5.4.0" sources."@esm2cjs/lowercase-keys-3.0.0" sources."@esm2cjs/mimic-response-4.0.0" sources."@esm2cjs/normalize-url-8.0.0" @@ -150855,28 +150303,29 @@ in sources."@esm2cjs/p-timeout-5.1.0" sources."@esm2cjs/responselike-3.0.0" sources."@homebridge/ciao-1.1.7" - (sources."@sentry-internal/tracing-7.53.1" // { + sources."@leichtgewicht/ip-codec-2.0.4" + (sources."@sentry-internal/tracing-7.54.0" // { dependencies = [ sources."tslib-1.14.1" ]; }) - (sources."@sentry/core-7.53.1" // { + (sources."@sentry/core-7.54.0" // { dependencies = [ sources."tslib-1.14.1" ]; }) - (sources."@sentry/integrations-7.53.1" // { + (sources."@sentry/integrations-7.54.0" // { dependencies = [ sources."tslib-1.14.1" ]; }) - (sources."@sentry/node-7.53.1" // { + (sources."@sentry/node-7.54.0" // { dependencies = [ sources."tslib-1.14.1" ]; }) - sources."@sentry/types-7.53.1" - (sources."@sentry/utils-7.53.1" // { + sources."@sentry/types-7.54.0" + (sources."@sentry/utils-7.54.0" // { dependencies = [ sources."tslib-1.14.1" ]; @@ -150897,14 +150346,14 @@ in sources."@serialport/stream-10.5.0" sources."@types/http-cache-semantics-4.0.1" sources."@types/triple-beam-1.3.2" - sources."@zwave-js/cc-10.22.3" - sources."@zwave-js/config-10.22.3" + sources."@zwave-js/cc-10.23.0" + sources."@zwave-js/config-10.23.0" sources."@zwave-js/core-10.22.3" - sources."@zwave-js/host-10.22.3" + sources."@zwave-js/host-10.23.0" sources."@zwave-js/nvmedit-10.22.3" - sources."@zwave-js/serial-10.22.3" + sources."@zwave-js/serial-10.23.0" sources."@zwave-js/shared-10.22.3" - sources."@zwave-js/testing-10.22.3" + sources."@zwave-js/testing-10.23.0" sources."agent-base-6.0.2" sources."alcalzone-shared-4.0.8" sources."ansi-colors-4.1.3" @@ -150929,11 +150378,12 @@ in sources."combined-stream-1.0.8" sources."cookie-0.4.2" sources."cross-spawn-7.0.3" - sources."dayjs-1.11.7" + sources."dayjs-1.11.8" sources."debug-4.3.4" sources."decompress-response-6.0.0" sources."defer-to-connect-2.0.1" sources."delayed-stream-1.0.0" + sources."dns-packet-5.6.0" sources."emoji-regex-8.0.0" sources."enabled-2.0.0" sources."escalade-3.1.1" @@ -150973,6 +150423,7 @@ in sources."lowercase-keys-3.0.0" sources."lru-cache-6.0.0" sources."lru_map-0.3.3" + sources."mdns-server-1.0.11" sources."merge-stream-2.0.0" sources."mime-db-1.52.0" sources."mime-types-2.1.35" @@ -151015,7 +150466,7 @@ in sources."text-hex-1.0.0" sources."tiny-glob-0.2.9" sources."triple-beam-1.3.0" - sources."tslib-2.5.2" + sources."tslib-2.5.3" sources."universalify-2.0.0" sources."utf-8-validate-6.0.3" sources."util-deprecate-1.0.2" @@ -151030,7 +150481,7 @@ in sources."yallist-4.0.0" sources."yargs-17.7.2" sources."yargs-parser-21.1.1" - sources."zwave-js-10.22.3" + sources."zwave-js-10.23.1" ]; buildInputs = globalBuildInputs; meta = { diff --git a/pkgs/development/node-packages/overrides.nix b/pkgs/development/node-packages/overrides.nix index 71546bb7aefb5..9326076818f69 100644 --- a/pkgs/development/node-packages/overrides.nix +++ b/pkgs/development/node-packages/overrides.nix @@ -17,6 +17,8 @@ let in final: prev: { + inherit nodejs; + "@angular/cli" = prev."@angular/cli".override { prePatch = '' export NG_CLI_ANALYTICS=false diff --git a/pkgs/development/ocaml-modules/benchmark/default.nix b/pkgs/development/ocaml-modules/benchmark/default.nix index 6c579e127184c..b0e17054eb532 100644 --- a/pkgs/development/ocaml-modules/benchmark/default.nix +++ b/pkgs/development/ocaml-modules/benchmark/default.nix @@ -1,26 +1,17 @@ -{ stdenv, lib, fetchzip, ocaml, findlib, ocamlbuild, ocaml_pcre }: +{ lib, fetchurl, buildDunePackage }: -stdenv.mkDerivation rec { - pname = "ocaml${ocaml.version}-benchmark"; - version = "1.4"; +buildDunePackage rec { + pname = "benchmark"; + version = "1.6"; - src = fetchzip { - url = "https://github.com/Chris00/ocaml-benchmark/releases/download/${version}/benchmark-${version}.tar.gz"; - sha256 = "16wi8ld7c3mq77ylpgbnj8qqqqimyzwxs47v06vyrwpma5pab5xa"; + src = fetchurl { + url = "https://github.com/Chris00/ocaml-benchmark/releases/download/${version}/benchmark-${version}.tbz"; + hash = "sha256-Mw19cYya/MEy52PVRYE/B6TnqCWw5tEz9CUrUfKAnPA="; }; - strictDeps = true; - - nativeBuildInputs = [ ocaml findlib ocamlbuild ]; - buildInputs = [ ocaml_pcre ]; - - createFindlibDestdir = true; - meta = { - homepage = "http://ocaml-benchmark.forge.ocamlcore.org/"; - inherit (ocaml.meta) platforms; + homepage = "https://github.com/Chris00/ocaml-benchmark"; description = "Benchmark running times of code"; license = lib.licenses.lgpl21; - maintainers = with lib.maintainers; [ ]; }; } diff --git a/pkgs/development/ocaml-modules/iter/default.nix b/pkgs/development/ocaml-modules/iter/default.nix index 7d0f9366a554c..167f3739d2693 100644 --- a/pkgs/development/ocaml-modules/iter/default.nix +++ b/pkgs/development/ocaml-modules/iter/default.nix @@ -1,25 +1,19 @@ -{ lib, fetchFromGitHub, buildDunePackage, ocaml, dune-configurator -, result, seq +{ lib, fetchurl, buildDunePackage , mdx, ounit2, qcheck-core }: buildDunePackage rec { pname = "iter"; - version = "1.6"; + version = "1.7"; - duneVersion = "3"; + minimalOCamlVersion = "4.08"; - src = fetchFromGitHub { - owner = "c-cube"; - repo = pname; - rev = "v${version}"; - sha256 = "sha256-FbM/Vk/h4wkrBjyf9/QXTvTOA0nNqsdHP1mDnVkg1is="; + src = fetchurl { + url = "https://github.com/c-cube/iter/releases/download/v${version}/iter-${version}.tbz"; + hash = "sha256-vtcSnPMxpBwDve1zsR6cEnUsyu3JELPt2Kwu4OEEtzA="; }; - buildInputs = [ dune-configurator ]; - propagatedBuildInputs = [ result seq ]; - - doCheck = lib.versionAtLeast ocaml.version "4.08"; + doCheck = true; nativeCheckInputs = [ mdx.bin ]; checkInputs = [ ounit2 qcheck-core ]; diff --git a/pkgs/development/ocaml-modules/janestreet/0.15.nix b/pkgs/development/ocaml-modules/janestreet/0.15.nix index a0d5edc7bf871..969dadb9f55ab 100644 --- a/pkgs/development/ocaml-modules/janestreet/0.15.nix +++ b/pkgs/development/ocaml-modules/janestreet/0.15.nix @@ -1060,7 +1060,8 @@ with self; virtual_dom = janePackage { pname = "virtual_dom"; - hash = "15xia9v4ighzm0gv3vbqk9nvg47cvzqmfnl2zr67yxv4b98kyzv3"; + version = "0.15.1"; + hash = "sha256-Uv6ZDxz2/H0nHjiycUKNQwy/zZyHHmwDEHknFHwDuDs="; meta.description = "OCaml bindings for the virtual-dom library"; buildInputs = [ js_of_ocaml-ppx ]; propagatedBuildInputs = [ core_kernel gen_js_api js_of_ocaml lambdasoup tyxml ]; diff --git a/pkgs/development/ocaml-modules/lwt/default.nix b/pkgs/development/ocaml-modules/lwt/default.nix index cf631fd08e415..4033336ae119b 100644 --- a/pkgs/development/ocaml-modules/lwt/default.nix +++ b/pkgs/development/ocaml-modules/lwt/default.nix @@ -16,6 +16,8 @@ buildDunePackage rec { }; postPatch = lib.optionalString (lib.versionAtLeast ocaml.version "5.0") '' + substituteInPlace src/core/dune \ + --replace "(libraries bytes)" "" substituteInPlace src/unix/dune \ --replace "libraries bigarray lwt" "libraries lwt" ''; diff --git a/pkgs/development/ocaml-modules/memtrace/default.nix b/pkgs/development/ocaml-modules/memtrace/default.nix new file mode 100644 index 0000000000000..66a008186c59a --- /dev/null +++ b/pkgs/development/ocaml-modules/memtrace/default.nix @@ -0,0 +1,23 @@ +{ lib, buildDunePackage, fetchFromGitHub +}: + +buildDunePackage rec { + pname = "memtrace"; + version = "0.2.2"; + + src = fetchFromGitHub { + owner = "janestreet"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-y/Xz04CMFfRIzrDzGot16zEQsBMNc4J5s/q0VERcj04="; + }; + + minimalOCamlVersion = "4.11"; + + meta = with lib; { + homepage = "https://github.com/janestreet/${pname}"; + description = "Streaming client for OCaml's Memprof"; + license = licenses.mit; + maintainers = with maintainers; [ niols ]; + }; +} diff --git a/pkgs/development/ocaml-modules/ocplib-endian/default.nix b/pkgs/development/ocaml-modules/ocplib-endian/default.nix index 285e8de84b397..c7fa14a291d71 100644 --- a/pkgs/development/ocaml-modules/ocplib-endian/default.nix +++ b/pkgs/development/ocaml-modules/ocplib-endian/default.nix @@ -13,7 +13,8 @@ buildDunePackage rec { postPatch = lib.optionalString (lib.versionAtLeast ocaml.version "5.0") '' substituteInPlace src/dune \ - --replace "libraries ocplib_endian bigarray" "libraries ocplib_endian" + --replace "(libraries bytes)" "" \ + --replace "libraries ocplib_endian bigarray bytes" "libraries ocplib_endian" ''; minimalOCamlVersion = "4.03"; diff --git a/pkgs/development/ocaml-modules/rope/default.nix b/pkgs/development/ocaml-modules/rope/default.nix index 302237c3fe7fe..ff4f304d68515 100644 --- a/pkgs/development/ocaml-modules/rope/default.nix +++ b/pkgs/development/ocaml-modules/rope/default.nix @@ -1,45 +1,24 @@ -{ stdenv, lib, fetchurl, ocaml, findlib, ocamlbuild, dune_2, benchmark }: +{ lib, fetchurl, ocaml, buildDunePackage, benchmark }: -let param = - if lib.versionAtLeast ocaml.version "4.03" - then rec { - version = "0.6.2"; - url = "https://github.com/Chris00/ocaml-rope/releases/download/${version}/rope-${version}.tbz"; - sha256 = "15cvfa0s1vjx7gjd07d3fkznilishqf4z4h2q5f20wm9ysjh2h2i"; - nativeBuildInputs = [ dune_2 ]; - extra = { - buildPhase = "dune build -p rope"; - installPhase = '' - dune install --prefix $out --libdir $OCAMLFIND_DESTDIR rope - ''; - }; - } else { - version = "0.5"; - url = "https://forge.ocamlcore.org/frs/download.php/1156/rope-0.5.tar.gz"; - sha256 = "05fr2f5ch2rqhyaj06rv5218sbg99p1m9pq5sklk04hpslxig21f"; - nativeBuildInputs = [ ocamlbuild ]; - extra = { createFindlibDestdir = true; }; - }; -in +lib.throwIf (lib.versionAtLeast ocaml.version "5.0") + "rope is not available for OCaml ${ocaml.version}" -stdenv.mkDerivation ({ - pname = "ocaml${ocaml.version}-rope"; - inherit (param) version; +buildDunePackage rec { + pname = "rope"; + version = "0.6.2"; + minimalOCamlVersion = "4.03"; src = fetchurl { - inherit (param) url sha256; + url = "https://github.com/Chris00/ocaml-rope/releases/download/${version}/rope-${version}.tbz"; + sha256 = "15cvfa0s1vjx7gjd07d3fkznilishqf4z4h2q5f20wm9ysjh2h2i"; }; - nativeBuildInputs = [ ocaml findlib ] ++ param.nativeBuildInputs; buildInputs = [ benchmark ] ; - strictDeps = true; - meta = { - homepage = "http://rope.forge.ocamlcore.org/"; - inherit (ocaml.meta) platforms; - description = ''Ropes ("heavyweight strings") in OCaml''; + homepage = "https://github.com/Chris00/ocaml-rope"; + description = "Ropes (“heavyweight strings”) in OCaml"; license = lib.licenses.lgpl21; maintainers = with lib.maintainers; [ ]; }; -} // param.extra) +} diff --git a/pkgs/development/ocaml-modules/uuidm/default.nix b/pkgs/development/ocaml-modules/uuidm/default.nix index bece082f6418f..949737d28ee07 100644 --- a/pkgs/development/ocaml-modules/uuidm/default.nix +++ b/pkgs/development/ocaml-modules/uuidm/default.nix @@ -11,6 +11,10 @@ stdenv.mkDerivation rec { sha256 = "sha256-/GZbkJVDQu1UY8SliK282kUWAVMfOnpQadUlRT/tJrM="; }; + postPatch = '' + substituteInPlace pkg/META --replace "bytes" "" + ''; + strictDeps = true; nativeBuildInputs = [ ocaml findlib ocamlbuild topkg ]; diff --git a/pkgs/development/perl-modules/TextBibTeX-use-lib-on-aarch64.patch b/pkgs/development/perl-modules/TextBibTeX-use-lib.patch index 42fa3728680b9..e5490ad6f1180 100644 --- a/pkgs/development/perl-modules/TextBibTeX-use-lib-on-aarch64.patch +++ b/pkgs/development/perl-modules/TextBibTeX-use-lib.patch @@ -5,7 +5,7 @@ } else { - if ( $Config{archname} =~ /^x86_64|^ppc64|^s390x|^aarch64|^riscv64/ ) { -+ if ( $Config{archname} =~ /^x86_64|^ppc64|^s390x|^riscv64/ ) { ++ if ( 0 ) { $libdir =~ s/\bbin\b/lib64/; if ( !-d $libdir ) { my $test = $libdir; diff --git a/pkgs/development/perl-modules/strip-nondeterminism/default.nix b/pkgs/development/perl-modules/strip-nondeterminism/default.nix index f867e84374320..3dac3868e6649 100644 --- a/pkgs/development/perl-modules/strip-nondeterminism/default.nix +++ b/pkgs/development/perl-modules/strip-nondeterminism/default.nix @@ -28,10 +28,9 @@ buildPerlPackage rec { buildInputs = [ ArchiveZip ArchiveCpio + SubOverride ]; - nativeCheckInputs = [ SubOverride ]; - postPatch = '' substituteInPlace lib/File/StripNondeterminism.pm \ --replace "exec('file'" "exec('${lib.getExe file}'" diff --git a/pkgs/development/php-packages/composer/default.nix b/pkgs/development/php-packages/composer/default.nix index e3a1037e4dd9d..1c0e30500e217 100644 --- a/pkgs/development/php-packages/composer/default.nix +++ b/pkgs/development/php-packages/composer/default.nix @@ -2,11 +2,11 @@ mkDerivation rec { pname = "composer"; - version = "2.5.5"; + version = "2.5.7"; src = fetchurl { url = "https://github.com/composer/composer/releases/download/${version}/composer.phar"; - sha256 = "sha256-VmptHPS+HMOsiC0qKhOBf/rlTmD1qnyRN0NIEKWAn/w="; + sha256 = "sha256-klbEwcgDudDLemahq2xzfkjEPMbfe47J7CSXpyS/RN4="; }; dontUnpack = true; diff --git a/pkgs/development/php-packages/pdepend/default.nix b/pkgs/development/php-packages/pdepend/default.nix index ff98ff2b8bda2..9e8bdd2ee1eca 100644 --- a/pkgs/development/php-packages/pdepend/default.nix +++ b/pkgs/development/php-packages/pdepend/default.nix @@ -2,14 +2,14 @@ let pname = "pdepend"; - version = "2.13.0"; + version = "2.14.0"; in stdenv.mkDerivation { inherit pname version; src = fetchurl { url = "https://github.com/pdepend/pdepend/releases/download/${version}/pdepend.phar"; - sha256 = "sha256-cd76PoHzAqsRxQzvklyEIsNO+4jByK8Mwx1aNu8rnnk="; + sha256 = "sha256-t6Yf+z/8O/tZuYoLAZo2G5bORh8XPeEMdK57dWjHsmk="; }; dontUnpack = true; diff --git a/pkgs/development/php-packages/relay/default.nix b/pkgs/development/php-packages/relay/default.nix new file mode 100644 index 0000000000000..e3fb71d744bab --- /dev/null +++ b/pkgs/development/php-packages/relay/default.nix @@ -0,0 +1,113 @@ +{ stdenv +, lib +, fetchurl +, php +, openssl +, openssl_1_1 +, zstd +, lz4 +, autoPatchelfHook +}: + +let + version = "0.6.3"; + system = stdenv.hostPlatform.system; + phpVersion = lib.versions.majorMinor php.version; + variation = { + "aarch64-darwin" = { + platform = "darwin-arm64"; + hashes = { + "8.0" = "00a7pyf9na7hjifkmp2482c7sh086w72zniqgr4cz2rhz7hnqp7p"; + "8.1" = "0mg6nsllycgjxxinn8s30y9sk06g40vk8blnpx0askjw5zdsf5y7"; + "8.2" = "0qmcbrj6jaxczv25rdgfjrj9nwq4vb2faw7kzlyxrvvzb5pyn9dm"; + "8.3" = "1hqjy5y4q3alxvrj7xksaf7vvmz8p51bgzxbvmzdx6jnl63dix33"; + }; + }; + "aarch64-linux" = { + platform = "debian-aarch64+libssl3"; + hashes = { + "8.0" = "19zzw4324z096b6bph1686r30i4i2kwmlmmcqmb33lqkr9b9n5ag"; + "8.1" = "0j6wpwy8d67pqij4v8m2xwydfddzr7nn4c3lyrssp8llbn4ghwpn"; + "8.2" = "1nbajvi5zk6z8qr32l86p65f1zxv12kald56pg8k7bj4axlj2pmy"; + "8.3" = "1sn638g2636m6s3lv2cclza9lzmzgqxamcga7jz3ijhn2ja6znbv"; + }; + }; + "x86_64-darwin" = { + platform = "darwin-x86-64"; + hashes = { + "8.0" = "13q6va9lxgfyx86xw20iqjz4s9r9xms74ywb2hgqrhs5mjnazzz4"; + "8.1" = "1ncih5bf0jcylpl0nj8hi50kcwb4nl1g0ql359dgg9gp8s1b4hmw"; + "8.2" = "150difm3vg0g2pl5hb5cci4jzybd7jcd7prjdv3rmwsi91gsydlv"; + # 8.3 for this platform does not exist + }; + }; + "x86_64-linux" = { + platform = "debian-x86-64+libssl3"; + hashes = { + "8.0" = "1qvd5r591kp7qf9pkymz78s8llzs1vxjwqhwy9rvma21hh6gd8ld"; + "8.1" = "0fm9ppgx7qaggid134qnl9jkq5h97dac2ax21f1f1d0k8f5blmc2"; + "8.2" = "0g2yqwfrigf047dqkrvfcj318lvgp38zy522ry484mrgq7iqwvb8"; + "8.3" = "06mi3yr7k1a9icdljzl76xvrw6xqnvwiavgzx2g487s097mycjp4"; + }; + }; + }.${system} or (throw "Unsupported platform for relay: ${system}"); +in +stdenv.mkDerivation (finalAttrs: { + inherit version; + pname = "relay"; + extensionName = "relay"; + + src = fetchurl { + url = "https://builds.r2.relay.so/v${finalAttrs.version}/relay-v${finalAttrs.version}-php" + + phpVersion + "-" + variation.platform + ".tar.gz"; + sha256 = variation.hashes.${phpVersion} or (throw "Unsupported PHP version for relay ${phpVersion} on ${system}"); + }; + nativeBuildInputs = lib.optionals (!stdenv.isDarwin) [ + autoPatchelfHook + ]; + buildInputs = lib.optionals (!stdenv.isDarwin) [ + openssl + zstd + lz4 + ]; + installPhase = '' + runHook preInstall + + mkdir -p $out/lib/php/extensions + cp relay-pkg.so $out/lib/php/extensions/relay.so + chmod +w $out/lib/php/extensions/relay.so + '' + (if stdenv.isDarwin then + let + args = lib.strings.concatMapStrings + (v: " -change /Users/administrator/dev/relay-dev/relay-deps/build/arm64/lib/${v.name}" + + " ${lib.strings.makeLibraryPath [ v.value ]}/${v.name}") + (with lib.attrsets; [ + (nameValuePair "libssl.1.1.dylib" openssl_1_1) + (nameValuePair "libcrypto.1.1.dylib" openssl_1_1) + (nameValuePair "libzstd.1.dylib" zstd) + (nameValuePair "liblz4.1.dylib" lz4) + ]); + in + # fixDarwinDylibNames can't be used here because we need to completely remap .dylibs, not just add absolute paths + '' + install_name_tool${args} $out/lib/php/extensions/relay.so + '' + else + "") + '' + # Random UUID that's required by the extension. Can be anything, but must be different from default. + sed -i "s/00000000-0000-0000-0000-000000000000/aced680f-30e9-40cc-a868-390ead14ba0c/" $out/lib/php/extensions/relay.so + chmod -w $out/lib/php/extensions/relay.so + + runHook postInstall + ''; + + meta = with lib; { + description = "Next-generation Redis extension for PHP"; + changelog = "https://github.com/cachewerk/relay/releases/tag/v${version}"; + homepage = "https://relay.so/"; + sourceProvenance = [ sourceTypes.binaryNativeCode ]; + license = licenses.unfree; + maintainers = with maintainers; [ tillkruss ostrolucky ]; + platforms = [ "x86_64-linux" "aarch64-linux" "x86_64-darwin" "aarch64-darwin" ]; + }; +}) diff --git a/pkgs/development/python-modules/adb-enhanced/default.nix b/pkgs/development/python-modules/adb-enhanced/default.nix index 4d7c6203a84ee..12726a6bac513 100644 --- a/pkgs/development/python-modules/adb-enhanced/default.nix +++ b/pkgs/development/python-modules/adb-enhanced/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "adb-enhanced"; - version = "2.5.18"; + version = "2.5.21"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "ashishb"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-xsl8AentI4Tqo2mHWFRi6myyb0/MemATJz9erKN9eKQ="; + hash = "sha256-kisP2RXpQa5uc53M3wcqN+1xgE/MGa2dVYzHnr1dgX8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aesedb/default.nix b/pkgs/development/python-modules/aesedb/default.nix index 95e953e1f5a16..5dd95fe9eae58 100644 --- a/pkgs/development/python-modules/aesedb/default.nix +++ b/pkgs/development/python-modules/aesedb/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "aesedb"; - version = "0.1.3"; + version = "0.1.4"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "skelsec"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-TXGRXo3754dEgRotDO5vSl9vj119Xday/176yem3cqk="; + hash = "sha256-QqPy68rWabRY0Y98W+odwP/10gMtLAQ0Ah2+ZLkqHPI="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/aigpy/default.nix b/pkgs/development/python-modules/aigpy/default.nix new file mode 100644 index 0000000000000..50249e93ab04d --- /dev/null +++ b/pkgs/development/python-modules/aigpy/default.nix @@ -0,0 +1,30 @@ +{ lib +, buildPythonPackage +, fetchPypi +, mutagen +, requests +, colorama +, prettytable +, pycrypto +, pydub +}: + +buildPythonPackage rec { + pname = "aigpy"; + version = "2022.7.8.1"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-1kQced6YdC/wvegqFVhZfej4+4aemGXvKysKjejP13w="; + }; + + propagatedBuildInputs = [ mutagen requests colorama prettytable pycrypto pydub ]; + + meta = { + homepage = "https://github.com/AIGMix/AIGPY"; + description = "A python library with miscellaneous tools"; + license = lib.licenses.mit; + maintainers = [ lib.maintainers.misterio77 ]; + platforms = lib.platforms.all; + }; +} diff --git a/pkgs/development/python-modules/ailment/default.nix b/pkgs/development/python-modules/ailment/default.nix index f2fa360494e4c..6cd8f66eb02f5 100644 --- a/pkgs/development/python-modules/ailment/default.nix +++ b/pkgs/development/python-modules/ailment/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "ailment"; - version = "9.2.52"; + version = "9.2.54"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-F5KEoxvGkop2mcAYHYt1flWKrtJ7oPLaRhhGGaXCTAc="; + hash = "sha256-Wm8LV0R41muvhBNDsnoywI57ZRO022IaPFMZfVS4cPA="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/aio-pika/default.nix b/pkgs/development/python-modules/aio-pika/default.nix index 18cb7dd3c5cdd..3bed234995521 100644 --- a/pkgs/development/python-modules/aio-pika/default.nix +++ b/pkgs/development/python-modules/aio-pika/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "aio-pika"; - version = "9.0.7"; + version = "9.1.2"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "mosquito"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-4RZxpLQ8YcPRXrF0mJcteUwejlIQx0CIy0cFpfMW/RU="; + hash = "sha256-iyy6HaB3S/CPYuo62SThe3m96eg9rPTMaKg2KWt0Kf0="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/aioairzone-cloud/default.nix b/pkgs/development/python-modules/aioairzone-cloud/default.nix new file mode 100644 index 0000000000000..eed58dbc8e49f --- /dev/null +++ b/pkgs/development/python-modules/aioairzone-cloud/default.nix @@ -0,0 +1,47 @@ +{ lib +, aiohttp +, buildPythonPackage +, fetchFromGitHub +, pythonOlder +, setuptools +, wheel +}: + +buildPythonPackage rec { + pname = "aioairzone-cloud"; + version = "0.1.7"; + format = "pyproject"; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "Noltari"; + repo = "aioairzone-cloud"; + rev = "refs/tags/${version}"; + hash = "sha256-IkV0gwsd/87GZ9LSQu6azQuoxPXuKNbjZMekVKxAl/A="; + }; + + nativeBuildInputs = [ + setuptools + wheel + ]; + + propagatedBuildInputs = [ + aiohttp + ]; + + pythonImportsCheck = [ + "aioairzone_cloud" + ]; + + # Module has no tests + doCheck = false; + + meta = with lib; { + description = "Library to control Airzone via Cloud API"; + homepage = "https://github.com/Noltari/aioairzone-cloud"; + changelog = "https://github.com/Noltari/aioairzone-cloud/releases/tag/${version}"; + license = licenses.asl20; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/aioesphomeapi/default.nix b/pkgs/development/python-modules/aioesphomeapi/default.nix index e910b9b3618bb..64ad7567f6bdd 100644 --- a/pkgs/development/python-modules/aioesphomeapi/default.nix +++ b/pkgs/development/python-modules/aioesphomeapi/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "aioesphomeapi"; - version = "13.7.5"; + version = "13.9.0"; format = "setuptools"; disabled = pythonOlder "3.9"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "esphome"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-HBBhKRY3nfZ8TaQeXXlvowWqHt/vrwXD9PUb1cLvHLo="; + hash = "sha256-RjLzOl8Cb6Vrq+75SvBntAmmiK70i3o2rED7Smnpiws="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aiofile/default.nix b/pkgs/development/python-modules/aiofile/default.nix index 27e7cc8126078..ba9bd0652cfb3 100644 --- a/pkgs/development/python-modules/aiofile/default.nix +++ b/pkgs/development/python-modules/aiofile/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "aiofile"; - version = "3.8.5"; + version = "3.8.6"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "mosquito"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-jQ97jtYhkqQgQjtHhtlk5JlvkzbFQw3kY6uXuV81ZkQ="; + hash = "sha256-KBly/aeHHZh7mL8MJ9gmxbqS7PmR4sedtBY/2HCXt54="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aiohomekit/default.nix b/pkgs/development/python-modules/aiohomekit/default.nix index 94b12357ad39c..705e47946f267 100644 --- a/pkgs/development/python-modules/aiohomekit/default.nix +++ b/pkgs/development/python-modules/aiohomekit/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "aiohomekit"; - version = "2.6.3"; + version = "2.6.4"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "Jc2k"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-bVvz5ruc1OpRnSKso3XHAnppnN/4ySfRHodE787eLFw="; + hash = "sha256-98VoRo3gxS70M/R0HYEK5VItJWcwMi8Z3r2eJ5lEeMw="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/aiokafka/default.nix b/pkgs/development/python-modules/aiokafka/default.nix index 03957073c149c..1335db763d12f 100644 --- a/pkgs/development/python-modules/aiokafka/default.nix +++ b/pkgs/development/python-modules/aiokafka/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "aiokafka"; - version = "0.8.0"; + version = "0.8.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "aio-libs"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-g7xUB5RfjG4G7J9Upj3KXKSePa+VDit1Zf8pWHfui1o="; + hash = "sha256-O5cDP0PWFrxNSdwWqUUkErUKf1Tt9agKJqWIjd4jGqk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/aiomisc/default.nix b/pkgs/development/python-modules/aiomisc/default.nix index 5ef0068cc2a32..2d06e507fce55 100644 --- a/pkgs/development/python-modules/aiomisc/default.nix +++ b/pkgs/development/python-modules/aiomisc/default.nix @@ -22,14 +22,14 @@ buildPythonPackage rec { pname = "aiomisc"; - version = "17.3.0"; + version = "17.3.2"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-HX3IfTQ/zgNnYRN1qnd3vVWvm84g2pjSOBjhzrZHEUI="; + hash = "sha256-tJ8d02KbG4z6cUflvjSF/Y7UHH8UqWT8UY7XFqNPP+o="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/aiopvpc/default.nix b/pkgs/development/python-modules/aiopvpc/default.nix index 14f3a83481d5b..e4afdbadbfa5e 100644 --- a/pkgs/development/python-modules/aiopvpc/default.nix +++ b/pkgs/development/python-modules/aiopvpc/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "aiopvpc"; - version = "4.1.0"; + version = "4.2.1"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "azogue"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-ixHLFVPlDZKQkPMrOt8PG5z+e84UlygQutkyS8wCZR4="; + hash = "sha256-gfF/SFfiZgkWH0cQZF3hxEp6xxRi46nfDBB23Gerv5g="; }; postPatch = '' diff --git a/pkgs/development/python-modules/aioslimproto/default.nix b/pkgs/development/python-modules/aioslimproto/default.nix index c790d12b1bfa5..354c7e6da2b5c 100644 --- a/pkgs/development/python-modules/aioslimproto/default.nix +++ b/pkgs/development/python-modules/aioslimproto/default.nix @@ -1,4 +1,5 @@ { lib +, async-timeout , buildPythonPackage , fetchFromGitHub , pytestCheckHook @@ -7,7 +8,7 @@ buildPythonPackage rec { pname = "aioslimproto"; - version = "2.2.0"; + version = "2.2.2"; format = "setuptools"; disabled = pythonOlder "3.9"; @@ -16,9 +17,13 @@ buildPythonPackage rec { owner = "home-assistant-libs"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-3aLAAUaoGkdzjUHFb6aiyVv0fzO8DojN0Y3DTf6h2Ow="; + hash = "sha256-ZvyAZ/VLkkZkDTBzuxt7hrCuYxNsMHm0C0wkabnE3Ek="; }; + propagatedBuildInputs = [ + async-timeout + ]; + nativeCheckInputs = [ pytestCheckHook ]; diff --git a/pkgs/development/python-modules/aiosmb/default.nix b/pkgs/development/python-modules/aiosmb/default.nix index 97cbd60db1abc..b0655e0dabc37 100644 --- a/pkgs/development/python-modules/aiosmb/default.nix +++ b/pkgs/development/python-modules/aiosmb/default.nix @@ -16,14 +16,14 @@ buildPythonPackage rec { pname = "aiosmb"; - version = "0.4.4"; + version = "0.4.6"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-IGIEmM9eZ5T+op3ctGr72oy/cU48+OHaFJaZ8DRTY38="; + hash = "sha256-Y0Z76YP1cWcfMKZOn2L6z4B+hAdibxJOYBzT3WV6FcY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aiosmtplib/default.nix b/pkgs/development/python-modules/aiosmtplib/default.nix index 7bce233a8921a..aadee81a829e1 100644 --- a/pkgs/development/python-modules/aiosmtplib/default.nix +++ b/pkgs/development/python-modules/aiosmtplib/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "aiosmtplib"; - version = "2.0.1"; + version = "2.0.2"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "cole"; repo = pname; rev = "v${version}"; - hash = "sha256-Py/44J9J8FdrsSpEM2/DR2DQH8x8Ub7y0FPIN2gcmmA="; + hash = "sha256-Wo9WH3fwGN1upLAyj6aThxpQE7hortISjaCATTPee40="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/aiounifi/default.nix b/pkgs/development/python-modules/aiounifi/default.nix index 6ecd275dcab10..077a1c2cf51e7 100644 --- a/pkgs/development/python-modules/aiounifi/default.nix +++ b/pkgs/development/python-modules/aiounifi/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "aiounifi"; - version = "47"; + version = "48"; format = "setuptools"; disabled = pythonOlder "3.9"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "Kane610"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-/BdSB7CD/ob8vinYDZVy0FNU23PSCiHF8jHGQUDsm1w="; + hash = "sha256-HxZoHul8Nef52st/e10jjtRUvI9NGXuX6/pFYoFI/80="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aiowinreg/default.nix b/pkgs/development/python-modules/aiowinreg/default.nix index 54c0f9132ef6f..19959b7accd4a 100644 --- a/pkgs/development/python-modules/aiowinreg/default.nix +++ b/pkgs/development/python-modules/aiowinreg/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "aiowinreg"; - version = "0.0.9"; + version = "0.0.10"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "skelsec"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-FyrYqNqp0PTEHHit3Rn00jtvPOvgVy+lz3jDRJnsobI="; + hash = "sha256-PkrBjH+yeSLpwL9kH242xQKBsjv6a11k2c26qBwR6Fw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aliyun-python-sdk-kms/default.nix b/pkgs/development/python-modules/aliyun-python-sdk-kms/default.nix index a57373d02b00d..36f5f197695b2 100644 --- a/pkgs/development/python-modules/aliyun-python-sdk-kms/default.nix +++ b/pkgs/development/python-modules/aliyun-python-sdk-kms/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "aliyun-python-sdk-kms"; - version = "2.16.0"; + version = "2.16.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-p/GFdyyI86DdqFa2Zt2kNtguAPnxHqW78S3KsmEO41g="; + hash = "sha256-o3JzdxVoIBS6zmi9QP6DMy9P2SUAmj6xENQbxm8nDno="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/angr/default.nix b/pkgs/development/python-modules/angr/default.nix index a95a7ded9a66e..6a1a2d80fe7b5 100644 --- a/pkgs/development/python-modules/angr/default.nix +++ b/pkgs/development/python-modules/angr/default.nix @@ -32,7 +32,7 @@ buildPythonPackage rec { pname = "angr"; - version = "9.2.52"; + version = "9.2.54"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -41,7 +41,7 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-EjCy8p4rqhoZx2W+8VutZj9o1WsMuH7ftfuKr1pw6YM="; + hash = "sha256-5EDVJN8o6Dkb3/QzJJ072RN1kYoMxDhrFnSVAzHzdNc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/ansible-compat/default.nix b/pkgs/development/python-modules/ansible-compat/default.nix index e2507d108aece..8c2bef9746007 100644 --- a/pkgs/development/python-modules/ansible-compat/default.nix +++ b/pkgs/development/python-modules/ansible-compat/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "ansible-compat"; - version = "4.0.5"; + version = "4.1.2"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-TX4zP41PNbED6rwCfZG1hdVd1hk6FLkRh/xmsa3Wxs0="; + hash = "sha256-aWFi28EiPAtHQTamFmKz/kQRXUkN6NpgaxSc7lcrAe0="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/anyio/default.nix b/pkgs/development/python-modules/anyio/default.nix index 5153a2b4d2621..82874b9a3132f 100644 --- a/pkgs/development/python-modules/anyio/default.nix +++ b/pkgs/development/python-modules/anyio/default.nix @@ -3,38 +3,44 @@ , buildPythonPackage , fetchFromGitHub , pythonOlder + +# build-system , setuptools , setuptools-scm + +# dependencies +, exceptiongroup , idna , sniffio -, typing-extensions -, curio + +# optionals +, trio + +# tests , hypothesis -, mock +, psutil , pytest-mock , pytest-xdist , pytestCheckHook -, trio , trustme , uvloop }: buildPythonPackage rec { pname = "anyio"; - version = "3.6.2"; + version = "3.7.0"; format = "pyproject"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "agronholm"; repo = pname; rev = version; - hash = "sha256-bootaulvx9zmobQGDirsMz5uxuLeCD9ggAvYkPaKnWo="; + hash = "sha256-uXPp2ycYl3T/ybZihDchImC/Yi4qgHI37ZeA+I6dg4c="; }; - preBuild = '' - export SETUPTOOLS_SCM_PRETEND_VERSION=${version} - ''; + env.SETUPTOOLS_SCM_PRETEND_VERSION = version; nativeBuildInputs = [ setuptools @@ -44,51 +50,52 @@ buildPythonPackage rec { propagatedBuildInputs = [ idna sniffio - ] ++ lib.optionals (pythonOlder "3.8") [ - typing-extensions + ] ++ lib.optionals (pythonOlder "3.11") [ + exceptiongroup ]; + passthru.optional-dependencies = { + trio = [ + trio + ]; + }; + # trustme uses pyopenssl doCheck = !(stdenv.isDarwin && stdenv.isAarch64); nativeCheckInputs = [ - curio hypothesis + psutil pytest-mock pytest-xdist pytestCheckHook - trio trustme + ] ++ lib.optionals (pythonOlder "3.12") [ uvloop - ] ++ lib.optionals (pythonOlder "3.8") [ - mock - ]; + ] ++ passthru.optional-dependencies.trio; pytestFlagsArray = [ "-W" "ignore::trio.TrioDeprecationWarning" + "-m" "'not network'" ]; disabledTests = [ - # block devices access - "test_is_block_device" # INTERNALERROR> AttributeError: 'NonBaseMultiError' object has no attribute '_exceptions'. Did you mean: 'exceptions'? "test_exception_group_children" "test_exception_group_host" "test_exception_group_filtering" - # regression in python 3.11.3 and 3.10.11 - # https://github.com/agronholm/anyio/issues/550 - "TestTLSStream" - "TestTLSListener" + ] ++ lib.optionals stdenv.isDarwin [ + # PermissionError: [Errno 1] Operation not permitted: '/dev/console' + "test_is_block_device" ]; disabledTestPaths = [ # lots of DNS lookups "tests/test_sockets.py" - ] ++ lib.optionals stdenv.isDarwin [ - # darwin sandboxing limitations - "tests/streams/test_tls.py" ]; + __darwinAllowLocalNetworking = true; + pythonImportsCheck = [ "anyio" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/apache-airflow/providers.nix b/pkgs/development/python-modules/apache-airflow/providers.nix deleted file mode 100644 index 5a7a464be7848..0000000000000 --- a/pkgs/development/python-modules/apache-airflow/providers.nix +++ /dev/null @@ -1,311 +0,0 @@ -# Warning: generated by update-providers.py, do not update manually -{ - airbyte = { - deps = [ "requests" "requests-toolbelt" ]; - imports = [ "airflow.providers.airbyte.hooks.airbyte" "airflow.providers.airbyte.operators.airbyte" ]; - }; - alibaba = { - deps = [ "oss2" ]; - imports = [ "airflow.providers.alibaba.cloud.hooks.oss" "airflow.providers.alibaba.cloud.operators.oss" ]; - }; - amazon = { - deps = [ "adal" "apache-beam" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "grpcio-gcp" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "pandas" "paramiko" "proto-plus" "protobuf" "psycopg2" "pymongo" "pyopenssl" "pysftp" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; - imports = [ "airflow.providers.amazon.aws.hooks.appflow" "airflow.providers.amazon.aws.hooks.athena" "airflow.providers.amazon.aws.hooks.base_aws" "airflow.providers.amazon.aws.hooks.batch_client" "airflow.providers.amazon.aws.hooks.batch_waiters" "airflow.providers.amazon.aws.hooks.cloud_formation" "airflow.providers.amazon.aws.hooks.datasync" "airflow.providers.amazon.aws.hooks.dms" "airflow.providers.amazon.aws.hooks.dynamodb" "airflow.providers.amazon.aws.hooks.ec2" "airflow.providers.amazon.aws.hooks.ecs" "airflow.providers.amazon.aws.hooks.eks" "airflow.providers.amazon.aws.hooks.elasticache_replication_group" "airflow.providers.amazon.aws.hooks.emr" "airflow.providers.amazon.aws.hooks.emr" "airflow.providers.amazon.aws.hooks.glacier" "airflow.providers.amazon.aws.hooks.glue" "airflow.providers.amazon.aws.hooks.glue_catalog" "airflow.providers.amazon.aws.hooks.glue_crawler" "airflow.providers.amazon.aws.hooks.kinesis" "airflow.providers.amazon.aws.hooks.lambda_function" "airflow.providers.amazon.aws.hooks.logs" "airflow.providers.amazon.aws.hooks.quicksight" "airflow.providers.amazon.aws.hooks.rds" "airflow.providers.amazon.aws.hooks.redshift_cluster" "airflow.providers.amazon.aws.hooks.redshift_data" "airflow.providers.amazon.aws.hooks.redshift_sql" "airflow.providers.amazon.aws.hooks.s3" "airflow.providers.amazon.aws.hooks.sagemaker" "airflow.providers.amazon.aws.hooks.secrets_manager" "airflow.providers.amazon.aws.hooks.ses" "airflow.providers.amazon.aws.hooks.sns" "airflow.providers.amazon.aws.hooks.sqs" "airflow.providers.amazon.aws.hooks.step_function" "airflow.providers.amazon.aws.hooks.sts" "airflow.providers.amazon.aws.operators.appflow" "airflow.providers.amazon.aws.operators.athena" "airflow.providers.amazon.aws.operators.aws_lambda" "airflow.providers.amazon.aws.operators.batch" "airflow.providers.amazon.aws.operators.cloud_formation" "airflow.providers.amazon.aws.operators.datasync" "airflow.providers.amazon.aws.operators.dms" "airflow.providers.amazon.aws.operators.ec2" "airflow.providers.amazon.aws.operators.ecs" "airflow.providers.amazon.aws.operators.eks" "airflow.providers.amazon.aws.operators.emr" "airflow.providers.amazon.aws.operators.emr" "airflow.providers.amazon.aws.operators.glacier" "airflow.providers.amazon.aws.operators.glue" "airflow.providers.amazon.aws.operators.glue_crawler" "airflow.providers.amazon.aws.operators.lambda_function" "airflow.providers.amazon.aws.operators.quicksight" "airflow.providers.amazon.aws.operators.rds" "airflow.providers.amazon.aws.operators.redshift_cluster" "airflow.providers.amazon.aws.operators.redshift_data" "airflow.providers.amazon.aws.operators.redshift_sql" "airflow.providers.amazon.aws.operators.s3" "airflow.providers.amazon.aws.operators.sagemaker" "airflow.providers.amazon.aws.operators.sns" "airflow.providers.amazon.aws.operators.sqs" "airflow.providers.amazon.aws.operators.step_function" ]; - }; - apache_beam = { - deps = [ "adal" "apache-beam" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "grpcio-gcp" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "pandas" "paramiko" "proto-plus" "protobuf" "psycopg2" "pymongo" "pyopenssl" "pysftp" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; - imports = [ "airflow.providers.apache.beam.hooks.beam" "airflow.providers.apache.beam.operators.beam" ]; - }; - apache_cassandra = { - deps = [ "cassandra-driver" ]; - imports = [ "airflow.providers.apache.cassandra.hooks.cassandra" ]; - }; - apache_drill = { - deps = [ ]; - imports = [ "airflow.providers.apache.drill.hooks.drill" "airflow.providers.apache.drill.operators.drill" ]; - }; - apache_druid = { - deps = [ "adal" "apache-beam" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "grpcio-gcp" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "pandas" "paramiko" "proto-plus" "protobuf" "psycopg2" "pymongo" "pyopenssl" "pysftp" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; - imports = [ "airflow.providers.apache.druid.hooks.druid" "airflow.providers.apache.druid.operators.druid" "airflow.providers.apache.druid.operators.druid_check" ]; - }; - apache_hdfs = { - deps = [ ]; - imports = [ "airflow.providers.apache.hdfs.hooks.hdfs" "airflow.providers.apache.hdfs.hooks.webhdfs" ]; - }; - apache_hive = { - deps = [ "adal" "apache-beam" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "grpcio-gcp" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "pandas" "paramiko" "proto-plus" "protobuf" "psycopg2" "pymongo" "pyopenssl" "pysftp" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; - imports = [ "airflow.providers.apache.hive.hooks.hive" "airflow.providers.apache.hive.operators.hive" "airflow.providers.apache.hive.operators.hive_stats" ]; - }; - apache_kylin = { - deps = [ ]; - imports = [ "airflow.providers.apache.kylin.hooks.kylin" "airflow.providers.apache.kylin.operators.kylin_cube" ]; - }; - apache_livy = { - deps = [ "requests" "requests-toolbelt" ]; - imports = [ "airflow.providers.apache.livy.hooks.livy" "airflow.providers.apache.livy.operators.livy" ]; - }; - apache_pig = { - deps = [ ]; - imports = [ "airflow.providers.apache.pig.hooks.pig" "airflow.providers.apache.pig.operators.pig" ]; - }; - apache_pinot = { - deps = [ "ciso8601" ]; - imports = [ "airflow.providers.apache.pinot.hooks.pinot" ]; - }; - apache_spark = { - deps = [ "pyspark" ]; - imports = [ "airflow.providers.apache.spark.hooks.spark_jdbc" "airflow.providers.apache.spark.hooks.spark_jdbc_script" "airflow.providers.apache.spark.hooks.spark_sql" "airflow.providers.apache.spark.hooks.spark_submit" "airflow.providers.apache.spark.operators.spark_jdbc" "airflow.providers.apache.spark.operators.spark_sql" "airflow.providers.apache.spark.operators.spark_submit" ]; - }; - apache_sqoop = { - deps = [ ]; - imports = [ "airflow.providers.apache.sqoop.hooks.sqoop" "airflow.providers.apache.sqoop.operators.sqoop" ]; - }; - arangodb = { - deps = [ ]; - imports = [ "airflow.providers.arangodb.hooks.arangodb" "airflow.providers.arangodb.operators.arangodb" ]; - }; - asana = { - deps = [ "asana" ]; - imports = [ "airflow.providers.asana.hooks.asana" "airflow.providers.asana.operators.asana_tasks" ]; - }; - atlassian_jira = { - deps = [ "jira" ]; - imports = [ "airflow.providers.atlassian.jira.hooks.jira" "airflow.providers.atlassian.jira.operators.jira" ]; - }; - celery = { - deps = [ "celery" "flower" ]; - imports = [ ]; - }; - cloudant = { - deps = [ ]; - imports = [ "airflow.providers.cloudant.hooks.cloudant" ]; - }; - cncf_kubernetes = { - deps = [ "cryptography" "kubernetes" ]; - imports = [ "airflow.providers.cncf.kubernetes.hooks.kubernetes" "airflow.providers.cncf.kubernetes.operators.kubernetes_pod" "airflow.providers.cncf.kubernetes.operators.spark_kubernetes" ]; - }; - common_sql = { - deps = [ "sqlparse" ]; - imports = [ "airflow.providers.common.sql.hooks.sql" "airflow.providers.common.sql.operators.sql" ]; - }; - databricks = { - deps = [ "aiohttp" "databricks-sql-connector" "requests" ]; - imports = [ "airflow.providers.databricks.hooks.databricks" "airflow.providers.databricks.hooks.databricks_base" "airflow.providers.databricks.hooks.databricks_sql" "airflow.providers.databricks.operators.databricks" "airflow.providers.databricks.operators.databricks_repos" "airflow.providers.databricks.operators.databricks_sql" ]; - }; - datadog = { - deps = [ "datadog" ]; - imports = [ "airflow.providers.datadog.hooks.datadog" ]; - }; - dbt_cloud = { - deps = [ "requests" "requests-toolbelt" ]; - imports = [ "airflow.providers.dbt.cloud.hooks.dbt" "airflow.providers.dbt.cloud.operators.dbt" ]; - }; - dingding = { - deps = [ "requests" "requests-toolbelt" ]; - imports = [ "airflow.providers.dingding.hooks.dingding" "airflow.providers.dingding.operators.dingding" ]; - }; - discord = { - deps = [ "requests" "requests-toolbelt" ]; - imports = [ "airflow.providers.discord.hooks.discord_webhook" "airflow.providers.discord.operators.discord_webhook" ]; - }; - docker = { - deps = [ "docker" ]; - imports = [ "airflow.providers.docker.hooks.docker" "airflow.providers.docker.operators.docker" "airflow.providers.docker.operators.docker_swarm" ]; - }; - elasticsearch = { - deps = [ "elasticsearch" "elasticsearch-dsl" ]; - imports = [ "airflow.providers.elasticsearch.hooks.elasticsearch" ]; - }; - exasol = { - deps = [ "pandas" ]; - imports = [ "airflow.providers.exasol.hooks.exasol" "airflow.providers.exasol.operators.exasol" ]; - }; - facebook = { - deps = [ ]; - imports = [ "airflow.providers.facebook.ads.hooks.ads" ]; - }; - ftp = { - deps = [ ]; - imports = [ "airflow.providers.ftp.hooks.ftp" ]; - }; - github = { - deps = [ "pygithub" ]; - imports = [ "airflow.providers.github.hooks.github" "airflow.providers.github.operators.github" ]; - }; - google = { - deps = [ "adal" "apache-beam" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "grpcio-gcp" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "pandas" "paramiko" "proto-plus" "protobuf" "psycopg2" "pymongo" "pyopenssl" "pysftp" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; - imports = [ "airflow.providers.google.ads.hooks.ads" "airflow.providers.google.ads.operators.ads" "airflow.providers.google.cloud.hooks.automl" "airflow.providers.google.cloud.hooks.bigquery" "airflow.providers.google.cloud.hooks.bigquery_dts" "airflow.providers.google.cloud.hooks.bigtable" "airflow.providers.google.cloud.hooks.cloud_build" "airflow.providers.google.cloud.hooks.cloud_composer" "airflow.providers.google.cloud.hooks.cloud_memorystore" "airflow.providers.google.cloud.hooks.cloud_sql" "airflow.providers.google.cloud.hooks.cloud_storage_transfer_service" "airflow.providers.google.cloud.hooks.compute" "airflow.providers.google.cloud.hooks.compute_ssh" "airflow.providers.google.cloud.hooks.datacatalog" "airflow.providers.google.cloud.hooks.dataflow" "airflow.providers.google.cloud.hooks.dataform" "airflow.providers.google.cloud.hooks.datafusion" "airflow.providers.google.cloud.hooks.dataplex" "airflow.providers.google.cloud.hooks.dataprep" "airflow.providers.google.cloud.hooks.dataproc" "airflow.providers.google.cloud.hooks.dataproc_metastore" "airflow.providers.google.cloud.hooks.datastore" "airflow.providers.google.cloud.hooks.dlp" "airflow.providers.google.cloud.hooks.functions" "airflow.providers.google.cloud.hooks.gcs" "airflow.providers.google.cloud.hooks.gdm" "airflow.providers.google.cloud.hooks.kms" "airflow.providers.google.cloud.hooks.kubernetes_engine" "airflow.providers.google.cloud.hooks.life_sciences" "airflow.providers.google.cloud.hooks.looker" "airflow.providers.google.cloud.hooks.mlengine" "airflow.providers.google.cloud.hooks.natural_language" "airflow.providers.google.cloud.hooks.os_login" "airflow.providers.google.cloud.hooks.pubsub" "airflow.providers.google.cloud.hooks.secret_manager" "airflow.providers.google.cloud.hooks.spanner" "airflow.providers.google.cloud.hooks.speech_to_text" "airflow.providers.google.cloud.hooks.stackdriver" "airflow.providers.google.cloud.hooks.tasks" "airflow.providers.google.cloud.hooks.text_to_speech" "airflow.providers.google.cloud.hooks.translate" "airflow.providers.google.cloud.hooks.vertex_ai.auto_ml" "airflow.providers.google.cloud.hooks.vertex_ai.batch_prediction_job" "airflow.providers.google.cloud.hooks.vertex_ai.custom_job" "airflow.providers.google.cloud.hooks.vertex_ai.dataset" "airflow.providers.google.cloud.hooks.vertex_ai.endpoint_service" "airflow.providers.google.cloud.hooks.vertex_ai.hyperparameter_tuning_job" "airflow.providers.google.cloud.hooks.vertex_ai.model_service" "airflow.providers.google.cloud.hooks.video_intelligence" "airflow.providers.google.cloud.hooks.vision" "airflow.providers.google.cloud.hooks.workflows" "airflow.providers.google.cloud.operators.automl" "airflow.providers.google.cloud.operators.bigquery" "airflow.providers.google.cloud.operators.bigquery_dts" "airflow.providers.google.cloud.operators.bigtable" "airflow.providers.google.cloud.operators.cloud_build" "airflow.providers.google.cloud.operators.cloud_composer" "airflow.providers.google.cloud.operators.cloud_memorystore" "airflow.providers.google.cloud.operators.cloud_sql" "airflow.providers.google.cloud.operators.cloud_storage_transfer_service" "airflow.providers.google.cloud.operators.compute" "airflow.providers.google.cloud.operators.datacatalog" "airflow.providers.google.cloud.operators.dataflow" "airflow.providers.google.cloud.operators.dataform" "airflow.providers.google.cloud.operators.datafusion" "airflow.providers.google.cloud.operators.dataplex" "airflow.providers.google.cloud.operators.dataprep" "airflow.providers.google.cloud.operators.dataproc" "airflow.providers.google.cloud.operators.dataproc_metastore" "airflow.providers.google.cloud.operators.datastore" "airflow.providers.google.cloud.operators.dlp" "airflow.providers.google.cloud.operators.functions" "airflow.providers.google.cloud.operators.gcs" "airflow.providers.google.cloud.operators.kubernetes_engine" "airflow.providers.google.cloud.operators.life_sciences" "airflow.providers.google.cloud.operators.looker" "airflow.providers.google.cloud.operators.mlengine" "airflow.providers.google.cloud.operators.natural_language" "airflow.providers.google.cloud.operators.pubsub" "airflow.providers.google.cloud.operators.spanner" "airflow.providers.google.cloud.operators.speech_to_text" "airflow.providers.google.cloud.operators.stackdriver" "airflow.providers.google.cloud.operators.tasks" "airflow.providers.google.cloud.operators.text_to_speech" "airflow.providers.google.cloud.operators.translate" "airflow.providers.google.cloud.operators.translate_speech" "airflow.providers.google.cloud.operators.translate_speech" "airflow.providers.google.cloud.operators.vertex_ai.auto_ml" "airflow.providers.google.cloud.operators.vertex_ai.batch_prediction_job" "airflow.providers.google.cloud.operators.vertex_ai.custom_job" "airflow.providers.google.cloud.operators.vertex_ai.dataset" "airflow.providers.google.cloud.operators.vertex_ai.endpoint_service" "airflow.providers.google.cloud.operators.vertex_ai.hyperparameter_tuning_job" "airflow.providers.google.cloud.operators.vertex_ai.model_service" "airflow.providers.google.cloud.operators.video_intelligence" "airflow.providers.google.cloud.operators.vision" "airflow.providers.google.cloud.operators.workflows" "airflow.providers.google.common.hooks.base_google" "airflow.providers.google.common.hooks.discovery_api" "airflow.providers.google.firebase.hooks.firestore" "airflow.providers.google.firebase.operators.firestore" "airflow.providers.google.leveldb.hooks.leveldb" "airflow.providers.google.leveldb.operators.leveldb" "airflow.providers.google.marketing_platform.hooks.analytics" "airflow.providers.google.marketing_platform.hooks.campaign_manager" "airflow.providers.google.marketing_platform.hooks.display_video" "airflow.providers.google.marketing_platform.hooks.search_ads" "airflow.providers.google.marketing_platform.operators.analytics" "airflow.providers.google.marketing_platform.operators.campaign_manager" "airflow.providers.google.marketing_platform.operators.display_video" "airflow.providers.google.marketing_platform.operators.search_ads" "airflow.providers.google.suite.hooks.calendar" "airflow.providers.google.suite.hooks.drive" "airflow.providers.google.suite.hooks.sheets" "airflow.providers.google.suite.operators.sheets" ]; - }; - grpc = { - deps = [ "google-auth" "google-auth-httplib2" "grpcio" ]; - imports = [ "airflow.providers.grpc.hooks.grpc" "airflow.providers.grpc.operators.grpc" ]; - }; - hashicorp = { - deps = [ "adal" "apache-beam" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "grpcio-gcp" "httpx" "hvac" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "pandas" "paramiko" "proto-plus" "protobuf" "psycopg2" "pymongo" "pyopenssl" "pysftp" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; - imports = [ "airflow.providers.hashicorp.hooks.vault" ]; - }; - http = { - deps = [ "requests" "requests-toolbelt" ]; - imports = [ "airflow.providers.http.hooks.http" "airflow.providers.http.operators.http" ]; - }; - imap = { - deps = [ ]; - imports = [ "airflow.providers.imap.hooks.imap" ]; - }; - influxdb = { - deps = [ "influxdb-client" "requests" ]; - imports = [ "airflow.providers.influxdb.hooks.influxdb" "airflow.providers.influxdb.operators.influxdb" ]; - }; - jdbc = { - deps = [ "jaydebeapi" ]; - imports = [ "airflow.providers.jdbc.hooks.jdbc" "airflow.providers.jdbc.operators.jdbc" ]; - }; - jenkins = { - deps = [ "python-jenkins" ]; - imports = [ "airflow.providers.jenkins.hooks.jenkins" "airflow.providers.jenkins.operators.jenkins_job_trigger" ]; - }; - jira = { - deps = [ "jira" ]; - imports = [ "airflow.providers.jira.hooks.jira" "airflow.providers.jira.operators.jira" ]; - }; - microsoft_azure = { - deps = [ "adal" "apache-beam" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "grpcio-gcp" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "pandas" "paramiko" "proto-plus" "protobuf" "psycopg2" "pymongo" "pyopenssl" "pysftp" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; - imports = [ "airflow.providers.microsoft.azure.hooks.adx" "airflow.providers.microsoft.azure.hooks.asb" "airflow.providers.microsoft.azure.hooks.azure_batch" "airflow.providers.microsoft.azure.hooks.azure_container_instance" "airflow.providers.microsoft.azure.hooks.azure_container_registry" "airflow.providers.microsoft.azure.hooks.azure_container_volume" "airflow.providers.microsoft.azure.hooks.azure_cosmos" "airflow.providers.microsoft.azure.hooks.azure_data_factory" "airflow.providers.microsoft.azure.hooks.azure_data_lake" "airflow.providers.microsoft.azure.hooks.azure_fileshare" "airflow.providers.microsoft.azure.hooks.base_azure" "airflow.providers.microsoft.azure.hooks.batch" "airflow.providers.microsoft.azure.hooks.container_instance" "airflow.providers.microsoft.azure.hooks.container_registry" "airflow.providers.microsoft.azure.hooks.container_volume" "airflow.providers.microsoft.azure.hooks.cosmos" "airflow.providers.microsoft.azure.hooks.data_factory" "airflow.providers.microsoft.azure.hooks.data_lake" "airflow.providers.microsoft.azure.hooks.fileshare" "airflow.providers.microsoft.azure.hooks.synapse" "airflow.providers.microsoft.azure.hooks.wasb" "airflow.providers.microsoft.azure.operators.adls" "airflow.providers.microsoft.azure.operators.adls_delete" "airflow.providers.microsoft.azure.operators.adls_list" "airflow.providers.microsoft.azure.operators.adx" "airflow.providers.microsoft.azure.operators.asb" "airflow.providers.microsoft.azure.operators.azure_batch" "airflow.providers.microsoft.azure.operators.azure_container_instances" "airflow.providers.microsoft.azure.operators.azure_cosmos" "airflow.providers.microsoft.azure.operators.batch" "airflow.providers.microsoft.azure.operators.container_instances" "airflow.providers.microsoft.azure.operators.cosmos" "airflow.providers.microsoft.azure.operators.data_factory" "airflow.providers.microsoft.azure.operators.synapse" "airflow.providers.microsoft.azure.operators.wasb_delete_blob" ]; - }; - microsoft_mssql = { - deps = [ ]; - imports = [ "airflow.providers.microsoft.mssql.hooks.mssql" "airflow.providers.microsoft.mssql.operators.mssql" ]; - }; - microsoft_psrp = { - deps = [ "pypsrp" ]; - imports = [ "airflow.providers.microsoft.psrp.hooks.psrp" "airflow.providers.microsoft.psrp.operators.psrp" ]; - }; - microsoft_winrm = { - deps = [ "pywinrm" ]; - imports = [ "airflow.providers.microsoft.winrm.hooks.winrm" "airflow.providers.microsoft.winrm.operators.winrm" ]; - }; - mongo = { - deps = [ "dnspython" "pymongo" ]; - imports = [ "airflow.providers.mongo.hooks.mongo" ]; - }; - mysql = { - deps = [ "adal" "apache-beam" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "grpcio-gcp" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "pandas" "paramiko" "proto-plus" "protobuf" "psycopg2" "pymongo" "pyopenssl" "pysftp" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; - imports = [ "airflow.providers.mysql.hooks.mysql" "airflow.providers.mysql.operators.mysql" ]; - }; - neo4j = { - deps = [ "neo4j" ]; - imports = [ "airflow.providers.neo4j.hooks.neo4j" "airflow.providers.neo4j.operators.neo4j" ]; - }; - odbc = { - deps = [ "pyodbc" ]; - imports = [ "airflow.providers.odbc.hooks.odbc" ]; - }; - openfaas = { - deps = [ ]; - imports = [ "airflow.providers.openfaas.hooks.openfaas" ]; - }; - opsgenie = { - deps = [ ]; - imports = [ "airflow.providers.opsgenie.hooks.opsgenie" "airflow.providers.opsgenie.hooks.opsgenie_alert" "airflow.providers.opsgenie.operators.opsgenie" "airflow.providers.opsgenie.operators.opsgenie_alert" ]; - }; - oracle = { - deps = [ ]; - imports = [ "airflow.providers.oracle.hooks.oracle" "airflow.providers.oracle.operators.oracle" ]; - }; - pagerduty = { - deps = [ ]; - imports = [ "airflow.providers.pagerduty.hooks.pagerduty" "airflow.providers.pagerduty.hooks.pagerduty_events" ]; - }; - papermill = { - deps = [ ]; - imports = [ "airflow.providers.papermill.operators.papermill" ]; - }; - plexus = { - deps = [ "arrow" ]; - imports = [ "airflow.providers.plexus.hooks.plexus" "airflow.providers.plexus.operators.job" ]; - }; - postgres = { - deps = [ "adal" "apache-beam" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "grpcio-gcp" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "pandas" "paramiko" "proto-plus" "protobuf" "psycopg2" "pymongo" "pyopenssl" "pysftp" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; - imports = [ "airflow.providers.postgres.hooks.postgres" "airflow.providers.postgres.operators.postgres" ]; - }; - presto = { - deps = [ "adal" "apache-beam" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "grpcio-gcp" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "pandas" "paramiko" "proto-plus" "protobuf" "psycopg2" "pymongo" "pyopenssl" "pysftp" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; - imports = [ "airflow.providers.presto.hooks.presto" ]; - }; - qubole = { - deps = [ "qds_sdk" ]; - imports = [ "airflow.providers.qubole.hooks.qubole" "airflow.providers.qubole.hooks.qubole_check" "airflow.providers.qubole.operators.qubole" "airflow.providers.qubole.operators.qubole_check" ]; - }; - redis = { - deps = [ "redis" ]; - imports = [ "airflow.providers.redis.hooks.redis" "airflow.providers.redis.operators.redis_publish" ]; - }; - salesforce = { - deps = [ "pandas" "simple-salesforce" ]; - imports = [ "airflow.providers.salesforce.hooks.salesforce" "airflow.providers.salesforce.operators.bulk" "airflow.providers.salesforce.operators.salesforce_apex_rest" ]; - }; - samba = { - deps = [ "smbprotocol" ]; - imports = [ "airflow.providers.samba.hooks.samba" ]; - }; - segment = { - deps = [ ]; - imports = [ "airflow.providers.segment.hooks.segment" "airflow.providers.segment.operators.segment_track_event" ]; - }; - sendgrid = { - deps = [ "sendgrid" ]; - imports = [ ]; - }; - sftp = { - deps = [ "paramiko" "pysftp" "sshtunnel" ]; - imports = [ "airflow.providers.sftp.hooks.sftp" "airflow.providers.sftp.operators.sftp" ]; - }; - singularity = { - deps = [ ]; - imports = [ "airflow.providers.singularity.operators.singularity" ]; - }; - slack = { - deps = [ "requests" "requests-toolbelt" "slack-sdk" ]; - imports = [ "airflow.providers.slack.hooks.slack" "airflow.providers.slack.hooks.slack_webhook" "airflow.providers.slack.operators.slack" "airflow.providers.slack.operators.slack_webhook" ]; - }; - snowflake = { - deps = [ "requests" "requests-toolbelt" "slack-sdk" "snowflake-connector-python" "snowflake-sqlalchemy" ]; - imports = [ "airflow.providers.snowflake.hooks.snowflake" "airflow.providers.snowflake.operators.snowflake" ]; - }; - sqlite = { - deps = [ ]; - imports = [ "airflow.providers.sqlite.hooks.sqlite" "airflow.providers.sqlite.operators.sqlite" ]; - }; - ssh = { - deps = [ "paramiko" "sshtunnel" ]; - imports = [ "airflow.providers.ssh.hooks.ssh" "airflow.providers.ssh.operators.ssh" ]; - }; - tableau = { - deps = [ ]; - imports = [ "airflow.providers.tableau.hooks.tableau" "airflow.providers.tableau.operators.tableau" "airflow.providers.tableau.operators.tableau_refresh_workbook" ]; - }; - tabular = { - deps = [ ]; - imports = [ "airflow.providers.tabular.hooks.tabular" ]; - }; - telegram = { - deps = [ "python-telegram-bot" ]; - imports = [ "airflow.providers.telegram.hooks.telegram" "airflow.providers.telegram.operators.telegram" ]; - }; - trino = { - deps = [ "adal" "apache-beam" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "grpcio-gcp" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "pandas" "paramiko" "proto-plus" "protobuf" "psycopg2" "pymongo" "pyopenssl" "pysftp" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; - imports = [ "airflow.providers.trino.hooks.trino" "airflow.providers.trino.operators.trino" ]; - }; - vertica = { - deps = [ "vertica-python" ]; - imports = [ "airflow.providers.vertica.hooks.vertica" "airflow.providers.vertica.operators.vertica" ]; - }; - yandex = { - deps = [ ]; - imports = [ "airflow.providers.yandex.hooks.yandex" "airflow.providers.yandex.hooks.yandexcloud_dataproc" "airflow.providers.yandex.operators.yandexcloud_dataproc" ]; - }; - zendesk = { - deps = [ ]; - imports = [ "airflow.providers.zendesk.hooks.zendesk" ]; - }; -} diff --git a/pkgs/development/python-modules/apprise/default.nix b/pkgs/development/python-modules/apprise/default.nix index 1cc11426b4802..c7a47f9b48ff3 100644 --- a/pkgs/development/python-modules/apprise/default.nix +++ b/pkgs/development/python-modules/apprise/default.nix @@ -19,14 +19,14 @@ buildPythonPackage rec { pname = "apprise"; - version = "1.3.0"; + version = "1.4.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-LFDBml3UExex9lnFKyGpkP6+bBXghGQiihzo5gmPEb8="; + hash = "sha256-4xUFNIVNrFPU8Hg42Mv7Is4NRdQuugX5bWbE9IQ81Vo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/apscheduler/default.nix b/pkgs/development/python-modules/apscheduler/default.nix index 7beaa6b934f77..de82a257733bb 100644 --- a/pkgs/development/python-modules/apscheduler/default.nix +++ b/pkgs/development/python-modules/apscheduler/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "apscheduler"; - version = "3.10.0"; + version = "3.10.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -26,7 +26,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "APScheduler"; inherit version; - hash = "sha256-pJ/CMmkhhBbw5BiQ7qenXtayhPEGMNz+hmq2WWIaNpY="; + hash = "sha256-ApOTfY9gUaD0kzWUQMGhuT6ILFfa8Bl6/v8Ocnd3uW4="; }; buildInputs = [ diff --git a/pkgs/development/python-modules/apsw/default.nix b/pkgs/development/python-modules/apsw/default.nix index 4da1eea51c224..5964274881c60 100644 --- a/pkgs/development/python-modules/apsw/default.nix +++ b/pkgs/development/python-modules/apsw/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "apsw"; - version = "3.41.0.0"; + version = "3.42.0.0"; format = "setuptools"; disabled = isPyPy; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "rogerbinns"; repo = "apsw"; rev = "refs/tags/${version}"; - hash = "sha256-U7NhC83wBaUONLsQbL+j9866u4zs58O6AQxwzS3e0qM="; + hash = "sha256-pLkYTyf2BGRLs4bChb+eo2i5gRRUUJDFyfCBTSJ1RkQ="; }; buildInputs = [ diff --git a/pkgs/development/python-modules/apycula/default.nix b/pkgs/development/python-modules/apycula/default.nix index 6d964fc5cba8f..b1b01c920ed7e 100644 --- a/pkgs/development/python-modules/apycula/default.nix +++ b/pkgs/development/python-modules/apycula/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "apycula"; - version = "0.8"; + version = "0.8.1"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -20,7 +20,7 @@ buildPythonPackage rec { src = fetchPypi { inherit version; pname = "Apycula"; - hash = "sha256-IUyhqOuftx06+dvN9afad10IpaefHoUeMwFyTzgBvOQ="; + hash = "sha256-IznOt69gzWO/+Snw9YfmDU2CE15IZ+jlPz+ZGfPzK+Q="; }; nativeBuildInputs = [ @@ -45,6 +45,7 @@ buildPythonPackage rec { meta = with lib; { description = "Open Source tools for Gowin FPGAs"; homepage = "https://github.com/YosysHQ/apicula"; + changelog = "https://github.com/YosysHQ/apicula/releases/tag/${version}"; license = licenses.mit; maintainers = with maintainers; [ newam ]; }; diff --git a/pkgs/development/python-modules/archinfo/default.nix b/pkgs/development/python-modules/archinfo/default.nix index afe4ddb259658..801e35c8fd8bb 100644 --- a/pkgs/development/python-modules/archinfo/default.nix +++ b/pkgs/development/python-modules/archinfo/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "archinfo"; - version = "9.2.52"; + version = "9.2.54"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-cPlRbtesG7QWxoeBm8bPXkN5yZGwiSreM3zayLWerfE="; + hash = "sha256-oAthM9ekGfMnkvX8AlslnABJ+LxjJV8OTTaWxJP3HyI="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/argparse-dataclass/default.nix b/pkgs/development/python-modules/argparse-dataclass/default.nix new file mode 100644 index 0000000000000..993242e4bd804 --- /dev/null +++ b/pkgs/development/python-modules/argparse-dataclass/default.nix @@ -0,0 +1,24 @@ +{ lib, buildPythonPackage, fetchFromGitHub, pytestCheckHook }: + +buildPythonPackage rec { + pname = "argparse-dataclass"; + version = "1.0.0"; + + src = fetchFromGitHub { + owner = "mivade"; + repo = "argparse_dataclass"; + rev = version; + sha256 = "6//XQKUnCH3ZtOL6M/EstMJ537nEmbuGQNqfelTluOs="; + }; + + checkInputs = [ pytestCheckHook ]; + + pythonImportsCheck = [ "argparse_dataclass" ]; + + meta = with lib; { + description = "Declarative CLIs with argparse and dataclasses"; + homepage = "https://github.com/mivade/argparse_dataclass"; + license = licenses.mit; + maintainers = with maintainers; [ tm-drtina ]; + }; +} diff --git a/pkgs/development/python-modules/art/default.nix b/pkgs/development/python-modules/art/default.nix new file mode 100644 index 0000000000000..be7eef1170372 --- /dev/null +++ b/pkgs/development/python-modules/art/default.nix @@ -0,0 +1,38 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +}: + +buildPythonPackage rec { + pname = "art"; + version = "5.9"; + format = "setuptools"; + + src = fetchFromGitHub { + owner = "sepandhaghighi"; + repo = "art"; + rev = "v${version}"; + hash = "sha256-3fX0kYYyeJ9tHX8/+hlv5aRE6LujXW915N5Ov6Q+EW8="; + }; + + pythonImportsCheck = [ "art" ]; + + # TypeError: art() missing 1 required positional argument: 'artname' + checkPhase = '' + runHook preCheck + + $out/bin/art + $out/bin/art test + $out/bin/art test2 + + runHook postCheck + ''; + + meta = with lib; { + description = "ASCII art library for Python"; + homepage = "https://github.com/sepandhaghighi/art"; + changelog = "https://github.com/sepandhaghighi/art/blob/${src.rev}/CHANGELOG.md"; + license = licenses.mit; + maintainers = with maintainers; [ figsoda ]; + }; +} diff --git a/pkgs/development/python-modules/asyauth/default.nix b/pkgs/development/python-modules/asyauth/default.nix index ab74cf9666c1e..f546540c94d4a 100644 --- a/pkgs/development/python-modules/asyauth/default.nix +++ b/pkgs/development/python-modules/asyauth/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "asyauth"; - version = "0.0.13"; + version = "0.0.14"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-tVvqzKsCvvSgKB3xRBMnIQLEDzCaPO/h8cM8WMpzi6M="; + hash = "sha256-EJLuSvkJrQBIrSM/dODhTtwPpnz67lmg4ZEwI4TPOVc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/asyncmy/default.nix b/pkgs/development/python-modules/asyncmy/default.nix index c7e4f1c4422a4..5a8c5bad75be8 100644 --- a/pkgs/development/python-modules/asyncmy/default.nix +++ b/pkgs/development/python-modules/asyncmy/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "asyncmy"; - version = "0.2.7"; + version = "0.2.8"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "long2ice"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-mkYh1fmhtBZ2DyL7a2RduTm+ig4Xnk5Ps1Tm0DS/OEc="; + hash = "sha256-2DqQclwTfHo3YFlJ7xL3cVnhGyS4ZE7VYYv6TBqRNL0="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/asyncstdlib/default.nix b/pkgs/development/python-modules/asyncstdlib/default.nix index b0391c385b37f..4d27c6da88277 100644 --- a/pkgs/development/python-modules/asyncstdlib/default.nix +++ b/pkgs/development/python-modules/asyncstdlib/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "asyncstdlib"; - version = "3.10.7"; + version = "3.10.8"; format = "flit"; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "maxfischer2781"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-lX5mOcoZTb6EfRHT0qTTWst3NErLti4jZwAeQx4pHGA="; + hash = "sha256-7HQFyIR+NWRzbFkzkZiuEQotZfCXpCzrWfWIFg1lWv4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/asyncwhois/default.nix b/pkgs/development/python-modules/asyncwhois/default.nix index f650e7a17e65e..27d9c71fc3c1b 100644 --- a/pkgs/development/python-modules/asyncwhois/default.nix +++ b/pkgs/development/python-modules/asyncwhois/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "asyncwhois"; - version = "1.0.5"; + version = "1.0.6"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "pogzyb"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-ILKnJlPT8BuZK06xk7fWYXcdn9SRL5zA3+B6CfJwvKM="; + hash = "sha256-SakO+s05P1Kj2NWlhMcdNa4bDs+DaVZ1W2ybs51U+BQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/asysocks/default.nix b/pkgs/development/python-modules/asysocks/default.nix index c8d8f6afbf9b9..0d052fa188dd6 100644 --- a/pkgs/development/python-modules/asysocks/default.nix +++ b/pkgs/development/python-modules/asysocks/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "asysocks"; - version = "0.2.5"; + version = "0.2.7"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-A8m6WA1SjD5awRdHtXsZNaG5vzSrtH2C23lzA1FhWlo="; + hash = "sha256-Kf2KDonjb+t7sA4jnC8mTh7fWoEDfRPhDkggb9A5E0Q="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/atlassian-python-api/default.nix b/pkgs/development/python-modules/atlassian-python-api/default.nix index 47d3741fa618f..d4ec880039a85 100755 --- a/pkgs/development/python-modules/atlassian-python-api/default.nix +++ b/pkgs/development/python-modules/atlassian-python-api/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "atlassian-python-api"; - version = "3.37.0"; + version = "3.38.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "atlassian-api"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-+lhDivbw30Oa3aB0TprRhBzv/c72IzNltFZA87LY2nM="; + hash = "sha256-jk5q5ymnwyQ3t6fP8E1dPM4jkaUllvZqo9RiX8+SnvI="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/awkward-cpp/default.nix b/pkgs/development/python-modules/awkward-cpp/default.nix index 3609a1db67f5e..0a034282eba10 100644 --- a/pkgs/development/python-modules/awkward-cpp/default.nix +++ b/pkgs/development/python-modules/awkward-cpp/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "awkward-cpp"; - version = "9"; + version = "15"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-2xyRwh+IuJo5tGF27cZ6CLN/coPBai7VFZ48h0YTxho="; + sha256 = "f6c825db2db981f852903d9574a07015c5d53ef8e4630772f18c7f167045aa0d"; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/awkward/default.nix b/pkgs/development/python-modules/awkward/default.nix index b7052b8f32dc7..0279327da2087 100644 --- a/pkgs/development/python-modules/awkward/default.nix +++ b/pkgs/development/python-modules/awkward/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "awkward"; - version = "2.0.8"; + version = "2.2.1"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-MqV8KeE6KuO8HmrFNjeCW70ixChmlhY71Bod7ChKjuU="; + sha256 = "653e5b69f1c8e32d1d59445a8414d03f850d327eb933f45aad163f0778861dc2"; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/aws-secretsmanager-caching/default.nix b/pkgs/development/python-modules/aws-secretsmanager-caching/default.nix index 95343fbf373df..7e54c030bf1e6 100644 --- a/pkgs/development/python-modules/aws-secretsmanager-caching/default.nix +++ b/pkgs/development/python-modules/aws-secretsmanager-caching/default.nix @@ -2,6 +2,7 @@ , buildPythonPackage , pythonOlder , fetchPypi +, setuptools , setuptools-scm , botocore , pytestCheckHook @@ -25,6 +26,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ botocore + setuptools # Needs pkg_resources at runtime. ]; patches = [ diff --git a/pkgs/development/python-modules/azure-containerregistry/default.nix b/pkgs/development/python-modules/azure-containerregistry/default.nix index 9da12c53e77eb..5bc1bde1ad83b 100644 --- a/pkgs/development/python-modules/azure-containerregistry/default.nix +++ b/pkgs/development/python-modules/azure-containerregistry/default.nix @@ -1,27 +1,41 @@ -{ lib, buildPythonPackage, fetchPypi, pythonOlder +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder , azure-core , msrest , msrestazure +, isodate }: buildPythonPackage rec { pname = "azure-containerregistry"; - version = "1.0.0"; - disabled = pythonOlder "3.6"; + version = "1.1.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-DIZCHZM5aeKtmJrgwAk5J26ltaxNxKUn3rR+FbmuyZc="; + hash = "sha256-6IU+fzMIL8HJv4rCrWlcJSuYre6cdBa7BjS9KrIbIRU="; extension = "zip"; }; - propagatedBuildInputs = [ azure-core msrest msrestazure ]; + propagatedBuildInputs = [ + azure-core + msrest + msrestazure + isodate + ]; # tests require azure-devtools which are not published (since 2020) # https://github.com/Azure/azure-sdk-for-python/blob/main/sdk/containerregistry/azure-containerregistry/dev_requirements.txt doCheck = false; - pythonImportsCheck = [ "azure.core" "azure.containerregistry" ]; + pythonImportsCheck = [ + "azure.core" + "azure.containerregistry" + ]; meta = with lib; { description = "Microsoft Azure Container Registry client library for Python"; diff --git a/pkgs/development/python-modules/azure-mgmt-compute/default.nix b/pkgs/development/python-modules/azure-mgmt-compute/default.nix index 325c384120049..e76e593d2963c 100644 --- a/pkgs/development/python-modules/azure-mgmt-compute/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-compute/default.nix @@ -3,25 +3,27 @@ , fetchPypi , azure-mgmt-common , azure-mgmt-core +, isodate , pythonOlder }: buildPythonPackage rec { pname = "azure-mgmt-compute"; - version = "29.1.0"; + version = "30.0.0"; format = "setuptools"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; extension = "zip"; - hash = "sha256-LVobrn9dMHyh6FDX6D/tnIOdT2NbEKS40/i8YJisKIg="; + hash = "sha256-cyD7r8OSdwsD7QK2h2AYXmCUVS7ZjX/V6nchClpRPHg="; }; propagatedBuildInputs = [ azure-mgmt-common azure-mgmt-core + isodate ]; pythonNamespaces = [ diff --git a/pkgs/development/python-modules/azure-mgmt-core/default.nix b/pkgs/development/python-modules/azure-mgmt-core/default.nix index 7be6bf9b9360b..d4e2f40b211ab 100644 --- a/pkgs/development/python-modules/azure-mgmt-core/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-core/default.nix @@ -6,13 +6,13 @@ }: buildPythonPackage rec { - version = "1.3.2"; + version = "1.4.0"; pname = "azure-mgmt-core"; src = fetchPypi { inherit pname version; extension = "zip"; - hash = "sha256-B/Sv6COlXXBLBI1h7f3BMYwFHtWfJEAyEmNQvpXp1QE="; + hash = "sha256-0ZUgg0AJT5jlpmYbeBzeb2oFHnnOMXyqvY/5cDCps64="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-frontdoor/default.nix b/pkgs/development/python-modules/azure-mgmt-frontdoor/default.nix index 4afabdf64ddde..094e79819c2ff 100644 --- a/pkgs/development/python-modules/azure-mgmt-frontdoor/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-frontdoor/default.nix @@ -9,12 +9,12 @@ buildPythonPackage rec { pname = "azure-mgmt-frontdoor"; - version = "1.0.1"; + version = "1.1.0"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "sha256-nJXQ/BpyOwmybNUqE4cBxq5xxZE56lqgHSTKZTIHIuU="; + sha256 = "sha256-GqrJNNcQrNffgqRywgaJ2xkwy+fOJai/RlSVkpw6NWg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-keyvault/default.nix b/pkgs/development/python-modules/azure-mgmt-keyvault/default.nix index fcbe335c670f6..772d60fd26b7c 100644 --- a/pkgs/development/python-modules/azure-mgmt-keyvault/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-keyvault/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "azure-mgmt-keyvault"; - version = "10.2.1"; + version = "10.2.2"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -18,7 +18,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; extension = "zip"; - hash = "sha256-lozs6Jy6V5cJigM7NUn8eyP/EVf/TKk+pZ9vABgAqK0="; + hash = "sha256-LG6oMTZepgT87KdJrwCpc4ZYEclUsEAHUitZrxFCkL4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-network/default.nix b/pkgs/development/python-modules/azure-mgmt-network/default.nix index 18abb6184de93..aacdf91ded3a2 100644 --- a/pkgs/development/python-modules/azure-mgmt-network/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-network/default.nix @@ -9,7 +9,7 @@ }: buildPythonPackage rec { - version = "23.0.1"; + version = "23.1.0"; pname = "azure-mgmt-network"; format = "setuptools"; @@ -18,7 +18,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; extension = "zip"; - hash = "sha256-VRkaaCNvuzOS/vR9iCum+WaIqBG9Y+3sRquNY2OniTA="; + hash = "sha256-NxcmmRE4MdfOG7naNcY1AHxzz/xUmoWlj1VUK1SxK/M="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-recoveryservices/default.nix b/pkgs/development/python-modules/azure-mgmt-recoveryservices/default.nix index a9158d8b581f4..0dcafd78877a7 100644 --- a/pkgs/development/python-modules/azure-mgmt-recoveryservices/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-recoveryservices/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "azure-mgmt-recoveryservices"; - version = "2.3.0"; + version = "2.4.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; extension = "zip"; - hash = "sha256-4L6Tqgvqh+nJyeXMolSpQ/2knAED75RQqD/lUDOt5ek="; + hash = "sha256-2JeOvtNxx6Z3AY4GI9fBRKbMcYVHsbrhk8C+5t5eelk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-multiapi-storage/default.nix b/pkgs/development/python-modules/azure-multiapi-storage/default.nix index 2405af112f7ba..09f8e3b1fad00 100644 --- a/pkgs/development/python-modules/azure-multiapi-storage/default.nix +++ b/pkgs/development/python-modules/azure-multiapi-storage/default.nix @@ -7,13 +7,13 @@ }: buildPythonPackage rec { - version = "1.1.0"; + version = "1.2.0"; pname = "azure-multiapi-storage"; disabled = isPy27; src = fetchPypi { inherit pname version; - hash = "sha256-VvNI+mhi2nCFBAXUEL5ph3xj/cBRMf2Mo2uXIgKC+oc="; + hash = "sha256-CQuoWHeh0EMitTRsvifotrTwpWd/Q9LWWD7jZ2w9r8I="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/bitarray/default.nix b/pkgs/development/python-modules/bitarray/default.nix index eaf0770dcb93d..3d480ea630980 100644 --- a/pkgs/development/python-modules/bitarray/default.nix +++ b/pkgs/development/python-modules/bitarray/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "bitarray"; - version = "2.7.3"; + version = "2.7.4"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-9xJWoyYJsDatrZMuEii2amtOLK5r45fliN3Aur2aeLk="; + hash = "sha256-FD1PZeH0WlM+E1Ib4dxVengjF+z3ZSDqvVqQOybssYc="; }; checkPhase = '' diff --git a/pkgs/development/python-modules/blinkpy/default.nix b/pkgs/development/python-modules/blinkpy/default.nix index 8b28cfacf1ac1..51e5e3b0f4724 100644 --- a/pkgs/development/python-modules/blinkpy/default.nix +++ b/pkgs/development/python-modules/blinkpy/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "blinkpy"; - version = "0.20.0"; + version = "0.21.0"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "fronzbot"; repo = "blinkpy"; rev = "refs/tags/v${version}"; - hash = "sha256-6la8rCmMtH2N4/P5OVGht1wgSuiW16MmF5a422LADV4="; + hash = "sha256-0sEZlnS6CJj8nMyjtSFZRALRKdmY0Uu5N6sozPiDG6w="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/blobfile/default.nix b/pkgs/development/python-modules/blobfile/default.nix index c4b6b36581145..9c99c8502774d 100644 --- a/pkgs/development/python-modules/blobfile/default.nix +++ b/pkgs/development/python-modules/blobfile/default.nix @@ -40,7 +40,7 @@ buildPythonPackage rec { description = "Read Google Cloud Storage, Azure Blobs, and local paths with the same interface"; homepage = "https://github.com/christopher-hesse/blobfile"; changelog = "https://github.com/christopher-hesse/blobfile/blob/v${version}/CHANGES.md"; - license = licenses.mit; + license = licenses.unlicense; maintainers = with maintainers; [ happysalada ]; }; } diff --git a/pkgs/development/python-modules/boa-api/default.nix b/pkgs/development/python-modules/boa-api/default.nix index 038d9b2c65aba..d96b64522622c 100644 --- a/pkgs/development/python-modules/boa-api/default.nix +++ b/pkgs/development/python-modules/boa-api/default.nix @@ -1,24 +1,34 @@ { lib , buildPythonPackage , fetchFromGitHub +, pythonOlder }: buildPythonPackage rec { pname = "boa-api"; version = "0.1.14"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "boalang"; repo = "api-python"; - rev = "v${version}"; + rev = "refs/tags/v${version}"; sha256 = "sha256-8tt68NLi5ewSKiHdu3gDawTBPylbDmB4zlUUqa7EQuY="; }; - pythonImportsCheck = [ "boaapi" ]; + # upstream has no tests + doCheck = false; + + pythonImportsCheck = [ + "boaapi" + ]; meta = { homepage = "https://github.com/boalang/api-python"; description = "Python client API for communicating with Boa's (https://boa.cs.iastate.edu/) XML-RPC based services"; + changelog = "https://github.com/boalang/api-python/blob/${src.rev}/Changes.txt"; license = lib.licenses.asl20; maintainers = with lib.maintainers; [ swflint ]; }; diff --git a/pkgs/development/python-modules/boxx/default.nix b/pkgs/development/python-modules/boxx/default.nix index 75bd3c2e561be..925aa2b2568b5 100644 --- a/pkgs/development/python-modules/boxx/default.nix +++ b/pkgs/development/python-modules/boxx/default.nix @@ -19,14 +19,14 @@ buildPythonPackage rec { pname = "boxx"; - version = "0.10.8"; + version = "0.10.9"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-uk4DYmbV/4zSyL2QzlAJLvgC6ieBjP/xkuyDktUEmIo="; + hash = "sha256-fWOGKDk7eJVlE9LMau3DZF8nFLUrmHpunAXdqLxHFHk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/broadbean/default.nix b/pkgs/development/python-modules/broadbean/default.nix new file mode 100644 index 0000000000000..aa4df0961797b --- /dev/null +++ b/pkgs/development/python-modules/broadbean/default.nix @@ -0,0 +1,47 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder +, setuptools +, versioningit +, numpy +, matplotlib +, schema +, hypothesis +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "broadbean"; + version = "0.11.0"; + format = "pyproject"; + + disabled = pythonOlder "3.7"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-e+LAcmWxT+SkaWtToPgg+x3QRu5fCSm+w4dLCcyZrw8="; + }; + + nativeBuildInputs = [ setuptools versioningit ]; + + propagatedBuildInputs = [ + numpy + matplotlib + schema + ]; + + nativeCheckInputs = [ + hypothesis + pytestCheckHook + ]; + + pythonImportsCheck = [ "broadbean" ]; + + meta = { + homepage = "https://qcodes.github.io/broadbean"; + description = "A library for making pulses that can be leveraged with QCoDeS"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ evilmav ]; + }; +} diff --git a/pkgs/development/python-modules/bx-py-utils/default.nix b/pkgs/development/python-modules/bx-py-utils/default.nix index f6a70a3adecf8..6dd705585f3df 100644 --- a/pkgs/development/python-modules/bx-py-utils/default.nix +++ b/pkgs/development/python-modules/bx-py-utils/default.nix @@ -1,4 +1,5 @@ { lib +, stdenv , buildPythonPackage , pythonOlder , fetchFromGitHub @@ -72,11 +73,16 @@ buildPythonPackage rec { disabledTestPaths = [ "bx_py_utils_tests/tests/test_project_setup.py" + ] ++ lib.optionals stdenv.isDarwin [ + # processify() doesn't work under darwin + # https://github.com/boxine/bx_py_utils/issues/80 + "bx_py_utils_tests/tests/test_processify.py" ]; meta = { description = "Various Python utility functions"; homepage = "https://github.com/boxine/bx_py_utils"; + changelog = "https://github.com/boxine/bx_py_utils/releases/tag/${src.rev}"; license = lib.licenses.mit; maintainers = with lib.maintainers; [ dotlambda ]; }; diff --git a/pkgs/tools/security/certipy/default.nix b/pkgs/development/python-modules/certipy-ad/default.nix index f369e97a56404..3f97d996bdfb8 100644 --- a/pkgs/tools/security/certipy/default.nix +++ b/pkgs/development/python-modules/certipy-ad/default.nix @@ -1,13 +1,25 @@ { lib +, asn1crypto +, buildPythonPackage +, dnspython +, dsinternals , fetchFromGitHub -, python3 +, impacket +, ldap3 +, pyasn1 +, pycryptodome +, pyopenssl +, pythonOlder +, requests_ntlm }: -python3.pkgs.buildPythonApplication rec { - pname = "certipy"; +buildPythonPackage rec { + pname = "certipy-ad"; version = "4.4.0"; format = "setuptools"; + disabled = pythonOlder "3.7"; + src = fetchFromGitHub { owner = "ly4k"; repo = "Certipy"; @@ -21,11 +33,12 @@ python3.pkgs.buildPythonApplication rec { --replace "pyasn1==0.4.8" "pyasn1" ''; - propagatedBuildInputs = with python3.pkgs; [ + propagatedBuildInputs = [ asn1crypto dnspython dsinternals impacket + pyopenssl ldap3 pyasn1 pycryptodome @@ -40,7 +53,7 @@ python3.pkgs.buildPythonApplication rec { ]; meta = with lib; { - description = "Tool to enumerate and abuse misconfigurations in Active Directory Certificate Services"; + description = "Library and CLI tool to enumerate and abuse misconfigurations in Active Directory Certificate Services"; homepage = "https://github.com/ly4k/Certipy"; changelog = "https://github.com/ly4k/Certipy/releases/tag/${version}"; license = with licenses; [ mit ]; diff --git a/pkgs/development/python-modules/cffi/clang-pointer-substraction-warning.diff b/pkgs/development/python-modules/cffi/clang-pointer-substraction-warning.diff new file mode 100644 index 0000000000000..75b2677e380e7 --- /dev/null +++ b/pkgs/development/python-modules/cffi/clang-pointer-substraction-warning.diff @@ -0,0 +1,11 @@ +diff -r c649a735cf82 testing/support.py +--- a/testing/support.py Thu Feb 23 05:42:01 2023 +0100 ++++ b/testing/support.py Sat May 20 21:46:56 2023 -0400 +@@ -112,6 +112,7 @@ + '-Wno-unreachable-code'] + # special things for clang + extra_compile_args.append('-Qunused-arguments') ++ extra_compile_args.append('-Wno-null-pointer-subtraction') + else: + # assume a standard gcc + extra_compile_args = ['-Werror', '-Wall', '-Wextra', '-Wconversion', diff --git a/pkgs/development/python-modules/cffi/default.nix b/pkgs/development/python-modules/cffi/default.nix index 5d3e220e98de0..0d93941b974d5 100644 --- a/pkgs/development/python-modules/cffi/default.nix +++ b/pkgs/development/python-modules/cffi/default.nix @@ -50,6 +50,12 @@ if isPyPy then null else buildPythonPackage rec { ]; hash = "sha256-+2daRTvxtyrCPimOEAmVbiVm1Bso9hxGbaAbd03E+ws="; }) + ] ++ lib.optionals (stdenv.cc.isClang && lib.versionAtLeast (lib.getVersion stdenv.cc) "13") [ + # -Wnull-pointer-subtraction is enabled with -Wextra. Suppress it to allow the following tests + # to run and pass when cffi is built with newer versions of clang: + # - testing/cffi1/test_verify1.py::test_enum_usage + # - testing/cffi1/test_verify1.py::test_named_pointer_as_argument + ./clang-pointer-substraction-warning.diff ] ++ lib.optionals (pythonAtLeast "3.11") [ # Fix test that failed because python seems to have changed the exception format in the # final release. This patch should be included in the next version and can be removed when diff --git a/pkgs/development/python-modules/cfscrape/default.nix b/pkgs/development/python-modules/cfscrape/default.nix index 222adbc489af0..f050217c3fb35 100644 --- a/pkgs/development/python-modules/cfscrape/default.nix +++ b/pkgs/development/python-modules/cfscrape/default.nix @@ -23,6 +23,6 @@ buildPythonPackage rec { description = "A Python module to bypass Cloudflare's anti-bot page"; license = licenses.mit; platforms = platforms.linux; - maintainers = with maintainers; [ WeebSorceress ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/claripy/default.nix b/pkgs/development/python-modules/claripy/default.nix index e3348080da023..df16caa5b5d49 100644 --- a/pkgs/development/python-modules/claripy/default.nix +++ b/pkgs/development/python-modules/claripy/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "claripy"; - version = "9.2.52"; + version = "9.2.54"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-tAEYoYj7fcXQw6MN8q5vA0eGXop83dGDiPuoADwpteU="; + hash = "sha256-YZvc2BIc8dAvDFfJ9+DEkfi8pXTFB0gQ5z7irYKZkw8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/class-doc/default.nix b/pkgs/development/python-modules/class-doc/default.nix new file mode 100644 index 0000000000000..937a94c953b88 --- /dev/null +++ b/pkgs/development/python-modules/class-doc/default.nix @@ -0,0 +1,49 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, poetry-core +, more-itertools +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "class-doc"; + version = "0.2.6"; + format = "pyproject"; + + src = fetchFromGitHub { + owner = "danields761"; + repo = "${pname}"; + rev = "9b122d85ce667d096ebee75a49350bbdbd48686d"; # no 0.2.6 version tag + hash = "sha256-4Sn/TuBvBpl1nvJBg327+sVrjGavkYKEYP32DwLWako="; + }; + + nativeBuildInputs = [ + poetry-core + ]; + + postPatch = '' + substituteInPlace pyproject.toml --replace \ + "poetry.masonry.api" \ + "poetry.core.masonry.api" + ''; + + propagatedBuildInputs = [ + more-itertools + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "class_doc" + ]; + + meta = with lib; { + description = "Extract attributes docstrings defined in various ways"; + homepage = "https://github.com/danields761/class-doc"; + license = licenses.mit; + maintainers = with maintainers; [ gador ]; + }; +} diff --git a/pkgs/development/python-modules/cle/default.nix b/pkgs/development/python-modules/cle/default.nix index 970e19c9e6a62..e7effa4fd9cd2 100644 --- a/pkgs/development/python-modules/cle/default.nix +++ b/pkgs/development/python-modules/cle/default.nix @@ -16,7 +16,7 @@ let # The binaries are following the argr projects release cycle - version = "9.2.52"; + version = "9.2.54"; # Binary files from https://github.com/angr/binaries (only used for testing and only here) binaries = fetchFromGitHub { @@ -38,7 +38,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-01NFCADCGo/frM2EKlkq4wpJ4lJeNoFoP1my+2PK73g="; + hash = "sha256-LezNPmHEy+rDGERhGfKuHGwfjAqlfBYxapjnxcY25ug="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/coinmetrics-api-client/default.nix b/pkgs/development/python-modules/coinmetrics-api-client/default.nix index 0d803dd54afcf..31fc61aa0d989 100644 --- a/pkgs/development/python-modules/coinmetrics-api-client/default.nix +++ b/pkgs/development/python-modules/coinmetrics-api-client/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "coinmetrics-api-client"; - version = "2023.5.2.20"; + version = "2023.5.26.17"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -26,7 +26,7 @@ buildPythonPackage rec { src = fetchPypi { inherit version; pname = "coinmetrics_api_client"; - hash = "sha256-20+qoCaSNGw4DVlW3USrSkg3fckqF77TQ7wmSsuZ3ek="; + hash = "sha256-GCHXraeH6WWTlCnw9B1Xwtb6jwcxcvW1siy2T/8x14Q="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/configshell/default.nix b/pkgs/development/python-modules/configshell/default.nix index 2cd66636b016b..40ea4fd7be754 100644 --- a/pkgs/development/python-modules/configshell/default.nix +++ b/pkgs/development/python-modules/configshell/default.nix @@ -8,13 +8,13 @@ buildPythonPackage rec { pname = "configshell"; - version = "1.1.29"; + version = "1.1.30"; src = fetchFromGitHub { owner = "open-iscsi"; repo = "${pname}-fb"; rev = "v${version}"; - sha256 = "0mjj3c9335sph8rhwww7j4zvhyk896fbmx887vibm89w3jpvjjr9"; + hash = "sha256-7iWmYVCodwncoPdpw85zrNsZSEq+ume412lyiiJqRPc="; }; propagatedBuildInputs = [ @@ -23,11 +23,6 @@ buildPythonPackage rec { urwid ]; - postPatch = '' - substituteInPlace setup.py \ - --replace "pyparsing >=2.0.2,<3.0" "pyparsing >=2.0.2" - ''; - # Module has no tests doCheck = false; diff --git a/pkgs/development/python-modules/croniter/default.nix b/pkgs/development/python-modules/croniter/default.nix index dbdccade27aca..6cc8bd2476276 100644 --- a/pkgs/development/python-modules/croniter/default.nix +++ b/pkgs/development/python-modules/croniter/default.nix @@ -1,20 +1,23 @@ { lib , buildPythonPackage , fetchPypi -, python-dateutil , pytestCheckHook +, python-dateutil +, pythonOlder , pytz , tzlocal }: buildPythonPackage rec { pname = "croniter"; - version = "1.3.14"; + version = "1.3.15"; format = "setuptools"; + disabled = pythonOlder "3.7"; + src = fetchPypi { inherit pname version; - hash = "sha256-0Gex+VtVPG6C2VqYPEZWlZE9zRL0eouaqTigRQ2U3V4="; + hash = "sha256-kko4/aiPZ17Gg1Zn4dMqw3/w1lUJwhUnKdFv8gXjKmU="; }; propagatedBuildInputs = [ @@ -34,6 +37,7 @@ buildPythonPackage rec { meta = with lib; { description = "Library to iterate over datetime object with cron like format"; homepage = "https://github.com/kiorky/croniter"; + changelog = "https://github.com/kiorky/croniter/blob/${version}/CHANGELOG.rst"; license = licenses.mit; maintainers = with maintainers; [ costrouc ]; }; diff --git a/pkgs/development/python-modules/cryptography/default.nix b/pkgs/development/python-modules/cryptography/default.nix index 199cfd86517f3..4815bfe90559a 100644 --- a/pkgs/development/python-modules/cryptography/default.nix +++ b/pkgs/development/python-modules/cryptography/default.nix @@ -9,8 +9,6 @@ , setuptools-rust , openssl , Security -, packaging -, six , isPyPy , cffi , pkg-config diff --git a/pkgs/development/python-modules/cwl-upgrader/default.nix b/pkgs/development/python-modules/cwl-upgrader/default.nix index bb8553cfe576c..21a9e359c413b 100644 --- a/pkgs/development/python-modules/cwl-upgrader/default.nix +++ b/pkgs/development/python-modules/cwl-upgrader/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "cwl-upgrader"; - version = "1.2.7"; + version = "1.2.8"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "common-workflow-language"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-/vCvpRpQkdMkqlK5/0jJTY56ROoB4ezvX9ma1AVWYd4="; + hash = "sha256-DwXwzhsv92t6PU4emmG7xlIU7uj3rcHh4+o9NqBMA+A="; }; postPatch = '' diff --git a/pkgs/development/python-modules/cypherpunkpay/default.nix b/pkgs/development/python-modules/cypherpunkpay/default.nix index f52fbd02cacd2..9bf5e8fcd85d2 100644 --- a/pkgs/development/python-modules/cypherpunkpay/default.nix +++ b/pkgs/development/python-modules/cypherpunkpay/default.nix @@ -11,7 +11,7 @@ , pypng , pyqrcode , pyramid -, pyramid_jinja2 +, pyramid-jinja2 , pysocks , pytestCheckHook , pythonOlder @@ -60,7 +60,7 @@ buildPythonPackage rec { pypng pyqrcode pyramid - pyramid_jinja2 + pyramid-jinja2 pysocks requests tzlocal diff --git a/pkgs/development/python-modules/dash/default.nix b/pkgs/development/python-modules/dash/default.nix index 593ee26ff8593..2602a613ca31d 100644 --- a/pkgs/development/python-modules/dash/default.nix +++ b/pkgs/development/python-modules/dash/default.nix @@ -21,7 +21,7 @@ buildPythonPackage rec { pname = "dash"; - version = "2.9.3"; + version = "2.10.1"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -30,7 +30,7 @@ buildPythonPackage rec { owner = "plotly"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-3Q9rp2V8TawT5yT3TBtdUgnMFqFGRNQCDhtgMb2dS6U="; + hash = "sha256-f/+GKbuijSE4LXhC7uPuLwJRk9xmChhanPIe2jagzEg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/dissect-cim/default.nix b/pkgs/development/python-modules/dissect-cim/default.nix index 4695ce7f02a2a..2c77074afaa69 100644 --- a/pkgs/development/python-modules/dissect-cim/default.nix +++ b/pkgs/development/python-modules/dissect-cim/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-cim"; - version = "3.5"; + version = "3.6"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.cim"; rev = "refs/tags/${version}"; - hash = "sha256-VRHnDLyHZEzeEFK+2MNQibekIlb+tsBEjUbT5tI/tIs="; + hash = "sha256-/Ze/fuWHa1Jfh63JnyJ4RvAq7HZv9CJyUGlt87YzpEs="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-clfs/default.nix b/pkgs/development/python-modules/dissect-clfs/default.nix index e608bbd9a560c..209f1a33f9d10 100644 --- a/pkgs/development/python-modules/dissect-clfs/default.nix +++ b/pkgs/development/python-modules/dissect-clfs/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "dissect-clfs"; - version = "1.4"; + version = "1.5"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.clfs"; rev = "refs/tags/${version}"; - hash = "sha256-/QZuet54ws0IsjHKlv2a3hqoXhY5VaQQ0jU81J46Cyg="; + hash = "sha256-utXgMVsNp78bwTBaSv5kglFfHrav5cV/YYzGCogJmtI="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-cobaltstrike/default.nix b/pkgs/development/python-modules/dissect-cobaltstrike/default.nix new file mode 100644 index 0000000000000..494273003642f --- /dev/null +++ b/pkgs/development/python-modules/dissect-cobaltstrike/default.nix @@ -0,0 +1,83 @@ +{ lib +, buildPythonPackage +, dissect-cstruct +, dissect-util +, fetchFromGitHub +, flow-record +, httpx +, lark +, pycryptodome +, pyshark +, pytest-httpserver +, pytestCheckHook +, pythonOlder +, rich +, setuptools +, setuptools-scm +}: + +buildPythonPackage rec { + pname = "dissect-cobaltstrike"; + version = "1.0.0"; + format = "pyproject"; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "fox-it"; + repo = "dissect.cobaltstrike"; + rev = "refs/tags/v${version}"; + hash = "sha256-CS50c3r7sdxp3CRS6XJ4QUmUFtmhFg6rSdKfYzJSOV4="; + }; + + SETUPTOOLS_SCM_PRETEND_VERSION = version; + + nativeBuildInputs = [ + setuptools + setuptools-scm + ]; + + propagatedBuildInputs = [ + dissect-cstruct + dissect-util + lark + ]; + + passthru.optional-dependencies = { + c2 = [ + flow-record + httpx + pycryptodome + ]; + pcap = [ + flow-record + httpx + pycryptodome + pyshark + ]; + full = [ + flow-record + httpx + pycryptodome + pyshark + rich + ]; + }; + + nativeCheckInputs = [ + pytest-httpserver + pytestCheckHook + ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies); + + pythonImportsCheck = [ + "dissect.cobaltstrike" + ]; + + meta = with lib; { + description = "Dissect module implementing a parser for Cobalt Strike related data"; + homepage = "https://github.com/fox-it/dissect.cobaltstrike"; + changelog = "https://github.com/fox-it/dissect.cobaltstrike/releases/tag/${version}"; + license = licenses.agpl3Only; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/dissect-cstruct/default.nix b/pkgs/development/python-modules/dissect-cstruct/default.nix index 7b290fa69ef97..e6ba0f5057da2 100644 --- a/pkgs/development/python-modules/dissect-cstruct/default.nix +++ b/pkgs/development/python-modules/dissect-cstruct/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "dissect-cstruct"; - version = "3.6"; + version = "3.7"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.cstruct"; rev = "refs/tags/${version}"; - hash = "sha256-f6cE1x7TsjJsdACLZjsbyfnTDPXcpXqs0qBo4l+fKS4="; + hash = "sha256-K+crraBIMCtT5WsGgyxoAZ49ff7ZUHga2qYtih6w0Ug="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-esedb/default.nix b/pkgs/development/python-modules/dissect-esedb/default.nix index 8f611cec8d39d..da8fa0a9e4b10 100644 --- a/pkgs/development/python-modules/dissect-esedb/default.nix +++ b/pkgs/development/python-modules/dissect-esedb/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-esedb"; - version = "3.6"; + version = "3.7"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.esedb"; rev = "refs/tags/${version}"; - hash = "sha256-RBU+aQbqPfF7kjt5Nc3+FnrmkTZgGyUv1HFTFP4ZgZ4="; + hash = "sha256-FQow4zuN1B6irX3ovz5K4xe6Z3PojtC9N+VLtb+UWzA="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-etl/default.nix b/pkgs/development/python-modules/dissect-etl/default.nix index be4566fbc9dcd..d080905ade780 100644 --- a/pkgs/development/python-modules/dissect-etl/default.nix +++ b/pkgs/development/python-modules/dissect-etl/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-etl"; - version = "3.4"; + version = "3.5"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.etl"; rev = "refs/tags/${version}"; - hash = "sha256-RNm6je3WW6ig+JCU4AlVYpAJZXq/l8U7Pbf/AGeAmXA="; + hash = "sha256-zVUe4obNhfUnI/wbxrKago/zgJcv9lzXbj1ogtIq5i4="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-eventlog/default.nix b/pkgs/development/python-modules/dissect-eventlog/default.nix index 076540e20e002..919ac9ce24239 100644 --- a/pkgs/development/python-modules/dissect-eventlog/default.nix +++ b/pkgs/development/python-modules/dissect-eventlog/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-eventlog"; - version = "3.4"; + version = "3.5"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.eventlog"; rev = "refs/tags/${version}"; - hash = "sha256-dU34eEUwRGHm/S0w6rnXJmootv1trkhKlXjWcfCFB3Q="; + hash = "sha256-YSJnNT+zzsS7aKT44NFwU3AmvhbTtW6kIgNd/CbSLYY="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-evidence/default.nix b/pkgs/development/python-modules/dissect-evidence/default.nix index 3e1c2fd8f9f8a..dd59ea746205c 100644 --- a/pkgs/development/python-modules/dissect-evidence/default.nix +++ b/pkgs/development/python-modules/dissect-evidence/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-evidence"; - version = "3.4"; + version = "3.5"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.evidence"; rev = "refs/tags/${version}"; - hash = "sha256-XGS0PevalwaQX5OF/KcDhNSJMPzUOiLO5nwp/K3HHJ8="; + hash = "sha256-yJDrI4BgCXgKt4DdMyUE7Y7EzYk5utBVir6Ejm7NCDQ="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-executable/default.nix b/pkgs/development/python-modules/dissect-executable/default.nix index ca079cf3c94c0..64bd4957cd562 100644 --- a/pkgs/development/python-modules/dissect-executable/default.nix +++ b/pkgs/development/python-modules/dissect-executable/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "dissect-executable"; - version = "1.2"; + version = "1.3"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.executable"; rev = "refs/tags/${version}"; - hash = "sha256-I/LwIGce1bebAvjVuFE0rJAuJ/65xMTIim6M0BJR6TI="; + hash = "sha256-YGpClgRVW8l5Ln6e3RrH1RhOSuZ/A6Kfjf1plomWE9U="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-extfs/default.nix b/pkgs/development/python-modules/dissect-extfs/default.nix index 63c0015335dea..0c8281a856008 100644 --- a/pkgs/development/python-modules/dissect-extfs/default.nix +++ b/pkgs/development/python-modules/dissect-extfs/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-extfs"; - version = "3.4"; + version = "3.5"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.extfs"; rev = "refs/tags/${version}"; - hash = "sha256-NSDhkkxqQSrfV1uttxUjLmdXlrgfAMrs5vSWgKyjuB4="; + hash = "sha256-JLMOW1DkLI/8+1Zx3DL0fwWKaMi8OcQMxUNE9k8zhXA="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; @@ -43,6 +43,9 @@ buildPythonPackage rec { "dissect.extfs" ]; + # Archive files seems to be corrupt + doCheck = false; + meta = with lib; { description = "Dissect module implementing a parser for the ExtFS file system"; homepage = "https://github.com/fox-it/dissect.extfs"; diff --git a/pkgs/development/python-modules/dissect-fat/default.nix b/pkgs/development/python-modules/dissect-fat/default.nix index aa0ccecc06e52..ab5457dbfb68f 100644 --- a/pkgs/development/python-modules/dissect-fat/default.nix +++ b/pkgs/development/python-modules/dissect-fat/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "dissect-fat"; - version = "3.4"; + version = "3.5"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.fat"; rev = "refs/tags/${version}"; - hash = "sha256-fnppFbdI+SfGPPcSspIQnI5wH3MerGtlEbm8pe3oSBs="; + hash = "sha256-eZtAUgy8WuJXZOMwdJ9fmGA85kBN/zCjRAU+jGP06LE="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-ffs/default.nix b/pkgs/development/python-modules/dissect-ffs/default.nix index 31f0fdb864b8d..c6a524d9c0461 100644 --- a/pkgs/development/python-modules/dissect-ffs/default.nix +++ b/pkgs/development/python-modules/dissect-ffs/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-ffs"; - version = "3.4"; + version = "3.5"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.ffs"; rev = "refs/tags/${version}"; - hash = "sha256-A2KyXkL5SKy/iX2G6jQ2Fyx08UKVnekPICdcLhUbm3Q="; + hash = "sha256-53XYrS8JbkdjOlzb1gF3tMuWEsdVhAwy4ciCdLae8kk="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-hypervisor/default.nix b/pkgs/development/python-modules/dissect-hypervisor/default.nix index d0e1edbe3e100..962338174a6ce 100644 --- a/pkgs/development/python-modules/dissect-hypervisor/default.nix +++ b/pkgs/development/python-modules/dissect-hypervisor/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "dissect-hypervisor"; - version = "3.6"; + version = "3.7"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.hypervisor"; rev = "refs/tags/${version}"; - hash = "sha256-6oPLl18U0TtVCkLsNN8Q4hBLArfXWWRkZI4VrFKJd9Q="; + hash = "sha256-glBmRzL5u+r668XHOZb6Lv0tSVvfQASPRUMAAJN4YHU="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-ntfs/default.nix b/pkgs/development/python-modules/dissect-ntfs/default.nix index f548e6279e25d..a837665235629 100644 --- a/pkgs/development/python-modules/dissect-ntfs/default.nix +++ b/pkgs/development/python-modules/dissect-ntfs/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-ntfs"; - version = "3.4"; + version = "3.5"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.ntfs"; rev = "refs/tags/${version}"; - hash = "sha256-n6FPdsObzHLhhkfyxTiCDR4PpIQqRJU+QpAYtxk1Snc="; + hash = "sha256-LehPdKCM7F7SpWDz3/svhUhiM4ii0AxENX0AyIGa2aY="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-ole/default.nix b/pkgs/development/python-modules/dissect-ole/default.nix index 75452f5f7c370..f2a0ab138c94b 100644 --- a/pkgs/development/python-modules/dissect-ole/default.nix +++ b/pkgs/development/python-modules/dissect-ole/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "dissect-ole"; - version = "3.4"; + version = "3.5"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.ole"; rev = "refs/tags/${version}"; - hash = "sha256-bzm9NynNUxXefWBxPIqPcRD5E52IF4on6JMtJOrvvyk="; + hash = "sha256-K+YHxxQAPmvJtsDAB/1oKdUOeUmY9LAT4/TT5bfMDQo="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-regf/default.nix b/pkgs/development/python-modules/dissect-regf/default.nix index f3a8d5415548a..f92539113642d 100644 --- a/pkgs/development/python-modules/dissect-regf/default.nix +++ b/pkgs/development/python-modules/dissect-regf/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-regf"; - version = "3.4"; + version = "3.5"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.regf"; rev = "refs/tags/${version}"; - hash = "sha256-nF9vJACNPA5QQy+nWjkkAoVAVdrlzAgKq//ldWpVtlE="; + hash = "sha256-/C2MuCziHCk/O38atcYOfnpjafom5jMKSx3z2mmJKVc="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-shellitem/default.nix b/pkgs/development/python-modules/dissect-shellitem/default.nix index 45bf80b9d9630..0a3ce03ff4c9d 100644 --- a/pkgs/development/python-modules/dissect-shellitem/default.nix +++ b/pkgs/development/python-modules/dissect-shellitem/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-shellitem"; - version = "3.4"; + version = "3.5"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.shellitem"; rev = "refs/tags/${version}"; - hash = "sha256-BL1eTxL82hjsGBRK5mBNxygEzQvjN8P6/tu6KOkHf9s="; + hash = "sha256-m/RBOF7BbYZuqfljgc/lE+HpRs+6wNNiwNa1/6SXp8U="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-sql/default.nix b/pkgs/development/python-modules/dissect-sql/default.nix index 1ce7c24961b19..c02b8d6eb241f 100644 --- a/pkgs/development/python-modules/dissect-sql/default.nix +++ b/pkgs/development/python-modules/dissect-sql/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-sql"; - version = "3.4"; + version = "3.5"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.sql"; rev = "refs/tags/${version}"; - hash = "sha256-JrdYCqyds6opgRz2Jxu70MewN7uR+GoN6GF0HZgB1BI="; + hash = "sha256-eKhW3Z7fzIKzGiemfjluuyBjsYXIZdgvnx39BIWYObM="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-squashfs/default.nix b/pkgs/development/python-modules/dissect-squashfs/default.nix index 6daa2d24922d5..7bfb0a2fcf491 100644 --- a/pkgs/development/python-modules/dissect-squashfs/default.nix +++ b/pkgs/development/python-modules/dissect-squashfs/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "dissect-squashfs"; - version = "1.1"; + version = "1.2"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.squashfs"; rev = "refs/tags/${version}"; - hash = "sha256-fcL0kPuJaole9EkrqU8Gouh3yquT2QaO8//R0ixMuP8="; + hash = "sha256-TgrtONUis0yD3s0JxJ0mNGLjEKlDgGZ+eO6NvSBTK14="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-target/default.nix b/pkgs/development/python-modules/dissect-target/default.nix index 91355ff46a283..14579971ec991 100644 --- a/pkgs/development/python-modules/dissect-target/default.nix +++ b/pkgs/development/python-modules/dissect-target/default.nix @@ -16,6 +16,7 @@ , dissect-ntfs , dissect-regf , dissect-sql +, dissect-shellitem , dissect-thumbcache , dissect-util , dissect-volume @@ -37,16 +38,16 @@ buildPythonPackage rec { pname = "dissect-target"; - version = "3.8"; + version = "3.9"; format = "pyproject"; - disabled = pythonOlder "3.8"; + disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "fox-it"; repo = "dissect.target"; rev = "refs/tags/${version}"; - hash = "sha256-CPN8g6LDeS77fveFOK6gExIJq9g+5qXhwDhjw3tWuJc="; + hash = "sha256-oqBBcoqk8HFuxnJK7/01Neb7Lwb1sIM/TMgXKVCBUoc="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; @@ -80,6 +81,7 @@ buildPythonPackage rec { dissect-extfs dissect-fat dissect-ffs + dissect-shellitem dissect-sql dissect-thumbcache dissect-xfs diff --git a/pkgs/development/python-modules/dissect-thumbcache/default.nix b/pkgs/development/python-modules/dissect-thumbcache/default.nix index 3841603b9f964..f7b2f3a01bbca 100644 --- a/pkgs/development/python-modules/dissect-thumbcache/default.nix +++ b/pkgs/development/python-modules/dissect-thumbcache/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-thumbcache"; - version = "1.3"; + version = "1.4"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.thumbcache"; rev = "refs/tags/${version}"; - hash = "sha256-HO2s9AxDRmL4TNRYCdkYpWry3i4GNR0K9i5D2Pz3mVQ="; + hash = "sha256-9+vXnXeIvC+kfH1Mv1Vnj7mm4f+Vtso5pdblQVUgFjg="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-util/default.nix b/pkgs/development/python-modules/dissect-util/default.nix index a89e53e868905..000ac19ecc80b 100644 --- a/pkgs/development/python-modules/dissect-util/default.nix +++ b/pkgs/development/python-modules/dissect-util/default.nix @@ -9,16 +9,16 @@ buildPythonPackage rec { pname = "dissect-util"; - version = "3.7"; + version = "3.8"; format = "pyproject"; - disabled = pythonOlder "3.7"; + disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "fox-it"; repo = "dissect.util"; rev = "refs/tags/${version}"; - hash = "sha256-uITIEiy4U2B0AQobvQIG/bYjelPmM8fyQduDhtC29QI="; + hash = "sha256-w2RT3tInp30IWk3CY02coJtSHdgWMravWwTK69GgSHc="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-vmfs/default.nix b/pkgs/development/python-modules/dissect-vmfs/default.nix index 020c9e0d2970a..8ea98013e05b3 100644 --- a/pkgs/development/python-modules/dissect-vmfs/default.nix +++ b/pkgs/development/python-modules/dissect-vmfs/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-vmfs"; - version = "3.4"; + version = "3.5"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.vmfs"; rev = "refs/tags/${version}"; - hash = "sha256-zLQzUSJnm5DOhKKCEWX1kVEmJK0oBGKHaWucVn1HOjg="; + hash = "sha256-diCJfaR5Q3s44ZJpxZv5R0rx8aThpZzyyLn/4dqJERQ="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-volume/default.nix b/pkgs/development/python-modules/dissect-volume/default.nix index 66232493da54c..a493eb72cc23d 100644 --- a/pkgs/development/python-modules/dissect-volume/default.nix +++ b/pkgs/development/python-modules/dissect-volume/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-volume"; - version = "3.4"; + version = "3.5"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.volume"; rev = "refs/tags/${version}"; - hash = "sha256-7ud767/UoOAbFaH1Jx4CAaQnVDzInsKIULg/LDhb/gY="; + hash = "sha256-qEVTutZzE5pjFsQ7XZSXyWa47RRsPj0eKFukuHPYUpU="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dissect-xfs/default.nix b/pkgs/development/python-modules/dissect-xfs/default.nix index fb49b20b4be58..0f5c473b2fe06 100644 --- a/pkgs/development/python-modules/dissect-xfs/default.nix +++ b/pkgs/development/python-modules/dissect-xfs/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "dissect-xfs"; - version = "3.4"; + version = "3.5"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect.xfs"; rev = "refs/tags/${version}"; - hash = "sha256-6EJyRqTOoYCqAihosAefBqRFniSkcw7pBLq16pyPntk="; + hash = "sha256-Dy7Tgp1eWROo3SGXKAl7hoaQgYOQomQjE9lnhsC7HyE="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; @@ -43,6 +43,9 @@ buildPythonPackage rec { "dissect.xfs" ]; + # Archive files seems to be corrupt + doCheck = false; + meta = with lib; { description = "Dissect module implementing a parser for the XFS file system"; homepage = "https://github.com/fox-it/dissect.xfs"; diff --git a/pkgs/development/python-modules/dissect/default.nix b/pkgs/development/python-modules/dissect/default.nix index 38ec652082d7d..d3fd72f9da57a 100644 --- a/pkgs/development/python-modules/dissect/default.nix +++ b/pkgs/development/python-modules/dissect/default.nix @@ -2,6 +2,7 @@ , buildPythonPackage , dissect-cim , dissect-clfs +, dissect-cobaltstrike , dissect-cstruct , dissect-esedb , dissect-etl @@ -31,7 +32,7 @@ buildPythonPackage rec { pname = "dissect"; - version = "3.5"; + version = "3.6"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -40,7 +41,7 @@ buildPythonPackage rec { owner = "fox-it"; repo = "dissect"; rev = "refs/tags/${version}"; - hash = "sha256-fprB+TPwtGpRcG6pkAWHsttjxTbFmmm96DguMh7f+18="; + hash = "sha256-B/yXxkWE3hxPhOKnvuB/DAgNOvLITJJre2I8QPo4eZs="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; @@ -53,6 +54,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ dissect-cim dissect-clfs + dissect-cobaltstrike dissect-cstruct dissect-esedb dissect-etl diff --git a/pkgs/development/python-modules/django-rest-registration/default.nix b/pkgs/development/python-modules/django-rest-registration/default.nix index a3da3d81a669e..898904fb92df8 100644 --- a/pkgs/development/python-modules/django-rest-registration/default.nix +++ b/pkgs/development/python-modules/django-rest-registration/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "django-rest-registration"; - version = "0.7.3"; + version = "0.8.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,8 +18,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "apragacz"; repo = pname; - rev = "refs/tags/${version}"; - hash = "sha256-JoIeVjl5s60ilq9kU28Jo+GaYRKU61hoqy1GzYmMdZQ="; + rev = "refs/tags/v${version}"; + hash = "sha256-kGZ88Z5nV3HChImmPurHoewobsjotZQ4q9RngBYGe5g="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/django-stubs-ext/default.nix b/pkgs/development/python-modules/django-stubs-ext/default.nix index 296e394953fc6..c5ea30c145608 100644 --- a/pkgs/development/python-modules/django-stubs-ext/default.nix +++ b/pkgs/development/python-modules/django-stubs-ext/default.nix @@ -9,19 +9,16 @@ buildPythonPackage rec { pname = "django-stubs-ext"; - version = "4.2.0"; + version = "4.2.1"; format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-d4nwyuynFS/vB61rlN7HMQoF0Ljat395eeGdsAN7USc="; + hash = "sha256-JpbW99hTg0GwYM/6lWXHLqeX6GZofgQLhtKcrYeZ5f4="; }; - # setup.cfg tries to pull in nonexistent LICENSE.txt file - postPatch = "rm setup.cfg"; - propagatedBuildInputs = [ django typing-extensions diff --git a/pkgs/development/python-modules/django-vite/default.nix b/pkgs/development/python-modules/django-vite/default.nix index 34bb765cff5c2..12918bb33bf2a 100644 --- a/pkgs/development/python-modules/django-vite/default.nix +++ b/pkgs/development/python-modules/django-vite/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "django-vite"; - version = "2.0.2"; + version = "2.1.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "MrBin99"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-lYRFNHTIQBn7CDnWFxSzXELzqEtQcbwHedSZnR7ZtbE="; + hash = "sha256-MKAzNtmFue7MrYtg5sOXog1u1daJwh3t98aIUSyyfBQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/django/4.nix b/pkgs/development/python-modules/django/4.nix index f6b19807a87e1..8359785305efb 100644 --- a/pkgs/development/python-modules/django/4.nix +++ b/pkgs/development/python-modules/django/4.nix @@ -42,14 +42,14 @@ buildPythonPackage rec { pname = "Django"; - version = "4.2.1"; + version = "4.2.2"; format = "pyproject"; disabled = pythonOlder "3.10"; src = fetchPypi { inherit pname version; - hash = "sha256-fvprH3gaYRmhCslLR5Te2Q24rMvngCKBzSb4Zk/+1Zw="; + hash = "sha256-Kmtvv/W1ndB77xC8sBm+4uqXowsqZW1RNGWWckMkut8="; }; patches = [ diff --git a/pkgs/development/python-modules/dtlssocket/default.nix b/pkgs/development/python-modules/dtlssocket/default.nix index a819c4ab40d16..107c9d23f1b8c 100644 --- a/pkgs/development/python-modules/dtlssocket/default.nix +++ b/pkgs/development/python-modules/dtlssocket/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "dtlssocket"; - version = "0.1.14"; + version = "0.1.15"; format = "pyproject"; src = fetchPypi { pname = "DTLSSocket"; inherit version; - hash = "sha256-BLNfdKDKUvc+BJnhLqx7VzJg0opvrdaXhNLCigLH02k="; + hash = "sha256-RWscUxJsmLkI2GPjnpS1oJVPsJ+xbqPAKk4Q1G7ISu4="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/dvc-azure/default.nix b/pkgs/development/python-modules/dvc-azure/default.nix index f9df83fb6526e..6ff2f4b3e2983 100644 --- a/pkgs/development/python-modules/dvc-azure/default.nix +++ b/pkgs/development/python-modules/dvc-azure/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "dvc-azure"; - version = "2.21.1"; + version = "2.21.2"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-0PB+2lPAV2yy2hivDDz0PXmi8WqoSlUZadyfKPp9o1g="; + hash = "sha256-ATxVIJ6qNNuz4p/DmcbBrc8KypfYquk4y/XQK7JmlPE="; }; # Prevent circular dependency diff --git a/pkgs/development/python-modules/dvc-data/default.nix b/pkgs/development/python-modules/dvc-data/default.nix index 937970d67cd25..967a5b08fbe90 100644 --- a/pkgs/development/python-modules/dvc-data/default.nix +++ b/pkgs/development/python-modules/dvc-data/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "dvc-data"; - version = "0.52.0"; + version = "0.54.3"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "iterative"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-Z5luqKuUForepBTZ7s2uDI09bK0NVhYMADFOj13nt0I="; + hash = "sha256-xkLqZmAzYfmfv9l1+PR8j5S7O5gKVh63+Jb9aZiLS8s="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dvclive/default.nix b/pkgs/development/python-modules/dvclive/default.nix index 3ebab15eb1bb4..266c2b409de54 100644 --- a/pkgs/development/python-modules/dvclive/default.nix +++ b/pkgs/development/python-modules/dvclive/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "dvclive"; - version = "2.10.0"; + version = "2.11.0"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "iterative"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-wnaw0jzaSIPsKaNNtYRUYYqQNpdcmtiunQnhpRQV66E="; + hash = "sha256-dV6ob+TXzQOuHU9bybAO8sVmrJ7yP8vwp0pXXFVNb34="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/dwdwfsapi/default.nix b/pkgs/development/python-modules/dwdwfsapi/default.nix index c32ebee5716b8..58b62032e33bc 100644 --- a/pkgs/development/python-modules/dwdwfsapi/default.nix +++ b/pkgs/development/python-modules/dwdwfsapi/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "dwdwfsapi"; - version = "1.0.6"; + version = "1.0.7"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-zeSV2acjtSWUYnrMjEBtrSPlXRvrNQRX5SYPYHnaOy0="; + hash = "sha256-7le1F+581JwrBX/C1aaqsDaSpIt0yNsNKiGnJtHUg5s="; }; propagatedBuildInputs = [ @@ -33,6 +33,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python client to retrieve data provided by DWD via their geoserver WFS API"; homepage = "https://github.com/stephan192/dwdwfsapi"; + changelog = "https://github.com/stephan192/dwdwfsapi/blob/v${version}/CHANGELOG.md"; license = with licenses; [ mit ]; maintainers = with maintainers; [ elohmeier ]; }; diff --git a/pkgs/development/python-modules/edk2-pytool-library/default.nix b/pkgs/development/python-modules/edk2-pytool-library/default.nix index 2506c5411fb96..15b3b883cdb2d 100644 --- a/pkgs/development/python-modules/edk2-pytool-library/default.nix +++ b/pkgs/development/python-modules/edk2-pytool-library/default.nix @@ -3,19 +3,22 @@ , fetchFromGitHub , setuptools , setuptools-scm +, pyasn1 +, pyasn1-modules +, cryptography , pytestCheckHook }: buildPythonPackage rec { pname = "edk2-pytool-library"; - version = "0.15.0"; + version = "0.15.2"; format = "pyproject"; src = fetchFromGitHub { owner = "tianocore"; repo = "edk2-pytool-library"; rev = "v${version}"; - hash = "sha256-YNXaptzsIlMXaZu8mFihsaQfmPALUcL47BFn4m8GMfY="; + hash = "sha256-gadFpFDHfiZ0vbUIEODu4SUL5SSsukdThxqP2ik5adI="; }; nativeBuildInputs = [ @@ -23,6 +26,12 @@ buildPythonPackage rec { setuptools-scm ]; + propagatedBuildInputs = [ + pyasn1 + pyasn1-modules + cryptography + ]; + nativeCheckInputs = [ pytestCheckHook ]; diff --git a/pkgs/development/python-modules/elastic-apm/default.nix b/pkgs/development/python-modules/elastic-apm/default.nix index d4876dd830529..9774a97f3639e 100644 --- a/pkgs/development/python-modules/elastic-apm/default.nix +++ b/pkgs/development/python-modules/elastic-apm/default.nix @@ -30,7 +30,7 @@ buildPythonPackage rec { pname = "elastic-apm"; - version = "6.15.1"; + version = "6.16.0"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -39,7 +39,7 @@ buildPythonPackage rec { owner = "elastic"; repo = "apm-agent-python"; rev = "refs/tags/v${version}"; - hash = "sha256-s07LZeT2vTtBU/48heGFrW74D1iqkxRaLh+LTD35mu8="; + hash = "sha256-BPk1F50aUNzROfK/r73AlMX2LIDgsn0R5HUthht/ItU="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/fastavro/default.nix b/pkgs/development/python-modules/fastavro/default.nix index baeb5e4f9e867..6cc980db09c67 100644 --- a/pkgs/development/python-modules/fastavro/default.nix +++ b/pkgs/development/python-modules/fastavro/default.nix @@ -15,14 +15,16 @@ buildPythonPackage rec { pname = "fastavro"; - version = "1.7.2"; + version = "1.7.4"; + format = "setuptools"; disabled = pythonOlder "3.6"; + src = fetchFromGitHub { owner = pname; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-IKs3uYGxiSy++tjF2XhWFrIfOo+SSl2JATUHBhCE3ZQ="; + hash = "sha256-oAOqViIBtIVYO0AN/Ug7I97QExhFaeFoNJ/7tpN/49w="; }; preBuild = '' @@ -31,15 +33,29 @@ buildPythonPackage rec { nativeBuildInputs = [ cython ]; + passthru.optional-dependencies = { + codecs = [ + lz4 + python-snappy + zstandard + ]; + snappy = [ + python-snappy + ]; + zstandard = [ + zstandard + ]; + lz4 = [ + lz4 + ]; + }; + nativeCheckInputs = [ - lz4 numpy pandas pytestCheckHook python-dateutil - python-snappy - zstandard - ]; + ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies); # Fails with "AttributeError: module 'fastavro._read_py' has no attribute # 'CYTHON_MODULE'." Doesn't appear to be serious. See https://github.com/fastavro/fastavro/issues/112#issuecomment-387638676. @@ -53,6 +69,7 @@ buildPythonPackage rec { meta = with lib; { description = "Fast read/write of AVRO files"; homepage = "https://github.com/fastavro/fastavro"; + changelog = "https://github.com/fastavro/fastavro/blob/${version}/ChangeLog"; license = licenses.mit; maintainers = with maintainers; [ samuela ]; }; diff --git a/pkgs/development/python-modules/ffmpeg-progress-yield/default.nix b/pkgs/development/python-modules/ffmpeg-progress-yield/default.nix index 5b3b42376a13c..6d0f35e278878 100644 --- a/pkgs/development/python-modules/ffmpeg-progress-yield/default.nix +++ b/pkgs/development/python-modules/ffmpeg-progress-yield/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "ffmpeg-progress-yield"; - version = "0.7.4"; + version = "0.7.8"; format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-gBWkoR0cJdcWShX9aIDt6DpK1dkT9bfvgnrgXGgZPSQ="; + hash = "sha256-muauX4Mq58ew9lGPE0H+bu4bqPydNADLocujjy6qRh4="; }; propagatedBuildInputs = [ colorama tqdm ]; diff --git a/pkgs/development/python-modules/filelock/default.nix b/pkgs/development/python-modules/filelock/default.nix index 4b25ff52aad54..62a65cfbdf63c 100644 --- a/pkgs/development/python-modules/filelock/default.nix +++ b/pkgs/development/python-modules/filelock/default.nix @@ -3,20 +3,21 @@ , fetchPypi , hatch-vcs , hatchling +, pytest-mock , pytestCheckHook , pythonOlder }: buildPythonPackage rec { pname = "filelock"; - version = "3.9.0"; + version = "3.12.0"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-ezGfJDQLUfVaK/ehKsB1WpsD5xgxHaxWeg9Pf6vS9d4="; + hash = "sha256-/AOuQyiMAT0uqDyFlwAbESnbNRqtnFf+JAkyeRa45xg="; }; nativeBuildInputs = [ @@ -25,6 +26,7 @@ buildPythonPackage rec { ]; nativeCheckInputs = [ + pytest-mock pytestCheckHook ]; diff --git a/pkgs/development/python-modules/filterpy/default.nix b/pkgs/development/python-modules/filterpy/default.nix index 877bd02ed31b2..86ea56f333474 100644 --- a/pkgs/development/python-modules/filterpy/default.nix +++ b/pkgs/development/python-modules/filterpy/default.nix @@ -1,32 +1,36 @@ { lib , buildPythonPackage -, fetchPypi +, fetchFromGitHub , numpy , scipy , matplotlib -, pytest +, pytestCheckHook , isPy3k }: -buildPythonPackage rec { - version = "1.4.5"; +buildPythonPackage { pname = "filterpy"; + version = "unstable-2022-08-23"; + format = "setuptools"; + disabled = !isPy3k; - src = fetchPypi { - inherit pname version; - extension = "zip"; - sha256 = "4f2a4d39e4ea601b9ab42b2db08b5918a9538c168cff1c6895ae26646f3d73b1"; + src = fetchFromGitHub { + owner = "rlabbe"; + repo = "filterpy"; + rev = "3b51149ebcff0401ff1e10bf08ffca7b6bbc4a33"; + hash = "sha256-KuuVu0tqrmQuNKYmDmdy+TU6BnnhDxh4G8n9BGzjGag="; }; - nativeCheckInputs = [ pytest ]; - propagatedBuildInputs = [ numpy scipy matplotlib ]; + nativeCheckInputs = [ + pytestCheckHook + ]; - # single test fails (even on master branch of repository) - # project does not use CI - checkPhase = '' - pytest --ignore=filterpy/common/tests/test_discretization.py - ''; + propagatedBuildInputs = [ + numpy + scipy + matplotlib + ]; meta = with lib; { homepage = "https://github.com/rlabbe/filterpy"; diff --git a/pkgs/development/python-modules/flask-appbuilder/default.nix b/pkgs/development/python-modules/flask-appbuilder/default.nix index c9c4bbff72625..b4f5c63d643d0 100644 --- a/pkgs/development/python-modules/flask-appbuilder/default.nix +++ b/pkgs/development/python-modules/flask-appbuilder/default.nix @@ -7,6 +7,7 @@ , email-validator , flask , flask-babel +, flask-limiter , flask-login , flask-openid , flask-sqlalchemy @@ -26,7 +27,7 @@ buildPythonPackage rec { pname = "flask-appbuilder"; - version = "4.2.1"; + version = "4.3.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -34,7 +35,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "Flask-AppBuilder"; inherit version; - hash = "sha256-rZbu0Bif5pOa/zu6MCrbGJpkqUdYzWyVgp6tqRzGyIc="; + hash = "sha256-FP92HEGOsufHtaIySqDiScD3QUu3iQhWdtvkOecUvuI="; }; propagatedBuildInputs = [ @@ -44,6 +45,7 @@ buildPythonPackage rec { email-validator flask flask-babel + flask-limiter flask-login flask-openid flask-sqlalchemy diff --git a/pkgs/development/python-modules/flask/default.nix b/pkgs/development/python-modules/flask/default.nix index 03b1873edc5f5..4bcb02880671e 100644 --- a/pkgs/development/python-modules/flask/default.nix +++ b/pkgs/development/python-modules/flask/default.nix @@ -19,12 +19,12 @@ buildPythonPackage rec { pname = "flask"; - version = "2.2.3"; + version = "2.2.5"; src = fetchPypi { pname = "Flask"; inherit version; - hash = "sha256-frNzmEvxx3ACP86dsWTtDDNTzQtT8TD0aT2gynVqLm0="; + hash = "sha256-7e6bCn/yZiG9WowQ/0hK4oc3okENmbC7mmhQx/uXeqA="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/flow-record/default.nix b/pkgs/development/python-modules/flow-record/default.nix index 825c7f19436b5..bd21e113f75b0 100644 --- a/pkgs/development/python-modules/flow-record/default.nix +++ b/pkgs/development/python-modules/flow-record/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , elasticsearch +, fastavro , fetchFromGitHub , lz4 , msgpack @@ -14,16 +15,16 @@ buildPythonPackage rec { pname = "flow-record"; - version = "3.9"; + version = "3.10"; format = "pyproject"; - disabled = pythonOlder "3.9"; + disabled = pythonOlder "3.10"; src = fetchFromGitHub { owner = "fox-it"; repo = "flow.record"; rev = "refs/tags/${version}"; - hash = "sha256-hvd5I1n3lOuP9sUtVO69yGCVOVEWYKKfFf7OjAJCXIg="; + hash = "sha256-pOEK53+rIwzTxDEla1xoWo/xgy+eN0nxR0MeW7VQFds="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; @@ -46,11 +47,14 @@ buildPythonPackage rec { elastic = [ elasticsearch ]; + avro = [ + fastavro + ] ++ fastavro.optional-dependencies.snappy; }; nativeCheckInputs = [ pytestCheckHook - ]; + ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies); pythonImportsCheck = [ "flow.record" @@ -61,7 +65,6 @@ buildPythonPackage rec { "tests/test_rdump.py" ]; - disabledTests = [ "test_rdump_fieldtype_path_json" ]; diff --git a/pkgs/development/python-modules/frigidaire/default.nix b/pkgs/development/python-modules/frigidaire/default.nix index a5a4c72451cb7..1519347b8ba2e 100644 --- a/pkgs/development/python-modules/frigidaire/default.nix +++ b/pkgs/development/python-modules/frigidaire/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "frigidaire"; - version = "0.18.12"; + version = "0.18.13"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "bm1549"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-U6ko6P5/ANGy84GQDuSQq+YArou0TrXH5SIc5x4euvU="; + hash = "sha256-FikBV4KjutQfupGPXcVT1h+BfQ099WRrmbrEJOaVCQI="; }; postPatch = '' diff --git a/pkgs/development/python-modules/furo/default.nix b/pkgs/development/python-modules/furo/default.nix index 2e4db29b4685c..b768dc72d1212 100644 --- a/pkgs/development/python-modules/furo/default.nix +++ b/pkgs/development/python-modules/furo/default.nix @@ -2,6 +2,7 @@ , buildPythonPackage , pythonOlder , fetchPypi +, pythonRelaxDepsHook , sphinx , beautifulsoup4 , sphinx-basic-ng @@ -9,7 +10,7 @@ buildPythonPackage rec { pname = "furo"; - version = "2023.3.27"; + version = "2023.5.20"; format = "wheel"; disable = pythonOlder "3.7"; @@ -18,9 +19,17 @@ buildPythonPackage rec { inherit pname version format; dist = "py3"; python = "py3"; - hash = "sha256-SrK+JUotXlJ5LQynk6EsNVgt0JiXIopt1HiF2r1clSE="; + hash = "sha256-WUqENt3+DAcfOp6aIJwxSiGdg0Hz8a8z/ffGlUT6ueY="; }; + nativeBuildInputs = [ + pythonRelaxDepsHook + ]; + + pythonRelaxDeps = [ + "sphinx" + ]; + propagatedBuildInputs = [ sphinx beautifulsoup4 diff --git a/pkgs/development/python-modules/gaphas/default.nix b/pkgs/development/python-modules/gaphas/default.nix index a82c444c7c815..20553c482b0b9 100644 --- a/pkgs/development/python-modules/gaphas/default.nix +++ b/pkgs/development/python-modules/gaphas/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "gaphas"; - version = "3.10.3"; + version = "3.11.1"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-I+/DsXppY//KOZgydDR4/Ks5qEsL4hLIiH+GaaFZHpA="; + hash = "sha256-TqrrGu+jk6WNXUnXJao71JHEu7Is27UeHAG29/Jpqb8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/gehomesdk/default.nix b/pkgs/development/python-modules/gehomesdk/default.nix index 6c700f3be0841..97f72a8c23a65 100644 --- a/pkgs/development/python-modules/gehomesdk/default.nix +++ b/pkgs/development/python-modules/gehomesdk/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "gehomesdk"; - version = "0.5.10"; + version = "0.5.11"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-M0G+UvFCegKEDA+0PI1voesMqIItKC0591ruZ4YvjMU="; + hash = "sha256-iX8Vb6uUn1a7qVxwL6ZFy1YAANaSrucpOOijI1ufZco="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/geometric/ase-is-optional.patch b/pkgs/development/python-modules/geometric/ase-is-optional.patch deleted file mode 100644 index 911867c354579..0000000000000 --- a/pkgs/development/python-modules/geometric/ase-is-optional.patch +++ /dev/null @@ -1,50 +0,0 @@ -From aff6e4411980ac9cbe112a050c3a34ba7e305a43 Mon Sep 17 00:00:00 2001 -From: =?UTF-8?q?Roberto=20Di=20Remigio=20Eik=C3=A5s?= - <robertodr@users.noreply.github.com> -Date: Fri, 11 Nov 2022 09:20:25 +0100 -Subject: [PATCH] Do not import ASE stuff at the top - -Since it is an optional add-on and it's not listed in the installation requirements. ---- - geometric/tests/test_ase_engine.py | 7 ++++++- - 1 file changed, 6 insertions(+), 1 deletion(-) - -diff --git a/geometric/tests/test_ase_engine.py b/geometric/tests/test_ase_engine.py -index 8750763..34239b5 100644 ---- a/geometric/tests/test_ase_engine.py -+++ b/geometric/tests/test_ase_engine.py -@@ -10,7 +10,6 @@ - - geometry optimisation w/ ASE internal calc - """ - import numpy as np --from ase.calculators.lj import LennardJones - from pytest import fixture, raises - - from geometric.ase_engine import EngineASE -@@ -37,6 +36,8 @@ def molecule_h2o() -> Molecule: - - @using_ase - def test_construction(molecule_h2o): -+ from ase.calculators.lj import LennardJones -+ - lj_calc = LennardJones() - engine = EngineASE(molecule_h2o, lj_calc) - assert engine.calculator == lj_calc -@@ -44,6 +45,8 @@ def test_construction(molecule_h2o): - - @using_ase - def test_from_args(molecule_h2o): -+ from ase.calculators.lj import LennardJones -+ - lj_calc = LennardJones(sigma=1.4, epsilon=3.0) - - # create equivalent engines in two ways -@@ -68,6 +71,8 @@ def test_from_args(molecule_h2o): - - @using_ase - def test_from_string(molecule_h2o): -+ from ase.calculators.lj import LennardJones -+ - engine = EngineASE.from_calculator_string( - molecule_h2o, calculator_import="ase.calculators.lj.LennardJones" - ) diff --git a/pkgs/development/python-modules/geometric/default.nix b/pkgs/development/python-modules/geometric/default.nix index 984eded7955cf..6d9e33df805b5 100644 --- a/pkgs/development/python-modules/geometric/default.nix +++ b/pkgs/development/python-modules/geometric/default.nix @@ -1,6 +1,7 @@ { buildPythonPackage , lib , fetchFromGitHub +, fetchpatch , networkx , numpy , scipy @@ -10,18 +11,20 @@ buildPythonPackage rec { pname = "geometric"; - version = "1.0"; + version = "1.0.1"; src = fetchFromGitHub { owner = "leeping"; repo = "geomeTRIC"; rev = version; - hash = "sha256-y8dh4vZ/d1KL1EpDrle8CH/KIDMCKKZdAyJVgUFjx/o="; + hash = "sha256-3d4z1n8+e0HgdeKLNSsHLb3XHOk09uy+gP9AwNvNITE="; }; - patches = [ - ./ase-is-optional.patch - ]; + patches = [ (fetchpatch { + name = "ase-is-optional"; + url = "https://github.com/leeping/geomeTRIC/commit/aff6e4411980ac9cbe112a050c3a34ba7e305a43.patch"; + hash = "sha256-JGGPX+JwkQ8Imgmyx+ReRTV+k6mxHYgm+Nd8WUjbFEg="; + }) ]; propagatedBuildInputs = [ networkx diff --git a/pkgs/development/python-modules/geopandas/default.nix b/pkgs/development/python-modules/geopandas/default.nix index 8c24fecb0b57b..ebc8c5377b3f8 100644 --- a/pkgs/development/python-modules/geopandas/default.nix +++ b/pkgs/development/python-modules/geopandas/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "geopandas"; - version = "0.13.0"; + version = "0.13.2"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "geopandas"; repo = "geopandas"; rev = "refs/tags/v${version}"; - hash = "sha256-GYEd679EX+gyGb2fpfyrJlGYPduc+W7I2tjTHegyWi8="; + hash = "sha256-8H0IO+Oabl1ZOHHvMFHnPEyW0xH/G4wuUtkZrsP6K3k="; }; propagatedBuildInputs = [ @@ -47,8 +47,7 @@ buildPythonPackage rec { disabledTests = [ # Requires network access - "test_read_file_remote_geojson_url" - "test_read_file_remote_zipfile_url" + "test_read_file_url" ]; pytestFlagsArray = [ @@ -64,6 +63,6 @@ buildPythonPackage rec { homepage = "https://geopandas.org"; changelog = "https://github.com/geopandas/geopandas/blob/v${version}/CHANGELOG.md"; license = licenses.bsd3; - maintainers = with maintainers; [ knedlsepp ]; + maintainers = teams.geospatial.members; }; } diff --git a/pkgs/development/python-modules/getmac/default.nix b/pkgs/development/python-modules/getmac/default.nix index 9ae482d86a5c5..0340642417c47 100644 --- a/pkgs/development/python-modules/getmac/default.nix +++ b/pkgs/development/python-modules/getmac/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "getmac"; - version = "0.9.3"; + version = "0.9.4"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "GhostofGoes"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-5g7FSdlwGeohbjOX3ErTKn83VDFtWV7fVq6zziAjCq0="; + hash = "sha256-B9agBmSrD3ZhqpGclZdMQNRSLSkepR6iduP1yrYz9tU="; }; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/glean-sdk/default.nix b/pkgs/development/python-modules/glean-sdk/default.nix index a6137bdc2dd47..22ac0e96ea9a3 100644 --- a/pkgs/development/python-modules/glean-sdk/default.nix +++ b/pkgs/development/python-modules/glean-sdk/default.nix @@ -6,8 +6,11 @@ , fetchPypi , glean-parser , iso8601 +, lmdb +, pkg-config , pytest-localserver , pytestCheckHook +, python , pythonOlder , rustc , rustPlatform @@ -34,11 +37,16 @@ buildPythonPackage rec { nativeBuildInputs = [ cargo + pkg-config rustc rustPlatform.cargoSetupHook setuptools-rust ]; + buildInputs = [ + lmdb + ]; + propagatedBuildInputs = [ cffi glean-parser @@ -57,6 +65,10 @@ buildPythonPackage rec { "test_flipping_upload_enabled_respects_order_of_events" ]; + postInstallCheck = lib.optionalString (stdenv.hostPlatform.parsed.kernel.execFormat == lib.systems.parse.execFormats.elf) '' + readelf -a $out/${python.sitePackages}/glean/libglean_ffi.so | grep -F 'Shared library: [liblmdb.so' + ''; + pythonImportsCheck = [ "glean" ]; diff --git a/pkgs/development/python-modules/glom/default.nix b/pkgs/development/python-modules/glom/default.nix index 97101ce578a3e..35d0b36a1bb18 100644 --- a/pkgs/development/python-modules/glom/default.nix +++ b/pkgs/development/python-modules/glom/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "glom"; - version = "23.1.1"; + version = "23.3.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-t0QjCeAT/rb+qyBhl6v4rsMoNexwnYqSqFFDIvZMDv8="; + hash = "sha256-AxaZKA+kZmBI5D0uq2i+EET/zUh6t0rLeS3i7rC8JRU="; }; postPatch = '' diff --git a/pkgs/development/python-modules/google-auth/default.nix b/pkgs/development/python-modules/google-auth/default.nix index 7c091acb8b415..a3247b4ea9380 100644 --- a/pkgs/development/python-modules/google-auth/default.nix +++ b/pkgs/development/python-modules/google-auth/default.nix @@ -27,14 +27,14 @@ buildPythonPackage rec { pname = "google-auth"; - version = "2.18.1"; + version = "2.19.1"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-16MkkCfn9GT7v9fugxmgitCdLupRV4V1xL02D/oEnMs="; + hash = "sha256-qc+oiz4WGWhF5ko2WOuVOZISnROsczewZMZUb3fBcYM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-bigquery-storage/default.nix b/pkgs/development/python-modules/google-cloud-bigquery-storage/default.nix index 329db692d1395..a23294a8cb7b8 100644 --- a/pkgs/development/python-modules/google-cloud-bigquery-storage/default.nix +++ b/pkgs/development/python-modules/google-cloud-bigquery-storage/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "google-cloud-bigquery-storage"; - version = "2.19.1"; + version = "2.20.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-DZtfQqcD8yELSzrUWhgTkZH5NHQP3zYpsbIv2VrfC7o="; + hash = "sha256-F61ZHBaE8cEaQl0+7wyWcrjQlk66QHQiUbUasjyjfZw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-bigquery/default.nix b/pkgs/development/python-modules/google-cloud-bigquery/default.nix index 566368bb257e1..4206c14e87c4e 100644 --- a/pkgs/development/python-modules/google-cloud-bigquery/default.nix +++ b/pkgs/development/python-modules/google-cloud-bigquery/default.nix @@ -28,14 +28,14 @@ buildPythonPackage rec { pname = "google-cloud-bigquery"; - version = "3.10.0"; + version = "3.11.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-SwLe8Hbi24zsZvZftifROQSp/Dz0/uMV7eQ9y3A4qN8="; + hash = "sha256-OhwbNWb58n6oOjaq9U64eURO5z70JFZ2QBigs7VW0Ps="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-container/default.nix b/pkgs/development/python-modules/google-cloud-container/default.nix index c39b41287d205..9a69c6069dabb 100644 --- a/pkgs/development/python-modules/google-cloud-container/default.nix +++ b/pkgs/development/python-modules/google-cloud-container/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "google-cloud-container"; - version = "2.21.0"; + version = "2.22.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-iFwf+qj/xqebEA+CWC9SDi3iEsfPiLcFLwUmnoxaxjg="; + hash = "sha256-zrttx7vfsUjFnCLyfYxG4uKH/RJr9BYCGZ3fxFg7Vsg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-datacatalog/default.nix b/pkgs/development/python-modules/google-cloud-datacatalog/default.nix index b164a97ec3832..cb6c238154c88 100644 --- a/pkgs/development/python-modules/google-cloud-datacatalog/default.nix +++ b/pkgs/development/python-modules/google-cloud-datacatalog/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "google-cloud-datacatalog"; - version = "3.12.0"; + version = "3.13.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-/duRr+Qkhm07CPdLXxOy0gvpokshMbEMLmgd9/R7C3A="; + hash = "sha256-YdEMSLC6qz79t/caG2DUMhSxxjCh40Cu3+aABvVxQow="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-language/default.nix b/pkgs/development/python-modules/google-cloud-language/default.nix index 956e2ee0ec671..367987b823078 100644 --- a/pkgs/development/python-modules/google-cloud-language/default.nix +++ b/pkgs/development/python-modules/google-cloud-language/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "google-cloud-language"; - version = "2.9.1"; + version = "2.10.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-sG2qgQsv1dIEI+2cICxJllmey4hbYRb8tzTcnhS3Yyg="; + hash = "sha256-lC3Hp1fBK09aYUv4hO77FOlPOqQb+W2h/2MGJ9MhZ/Q="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-monitoring/default.nix b/pkgs/development/python-modules/google-cloud-monitoring/default.nix index ca2b8959d58f0..66a49625d1a32 100644 --- a/pkgs/development/python-modules/google-cloud-monitoring/default.nix +++ b/pkgs/development/python-modules/google-cloud-monitoring/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "google-cloud-monitoring"; - version = "2.14.2"; + version = "2.15.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-5v2hMJeeLo11mrcNZCe1lISBlIyW9f1KQjcLqWoRlZs="; + hash = "sha256-w6BCbs0lpw2lOyqQedcXMSKahJak7a6NN4Xsy7+CjVs="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-redis/default.nix b/pkgs/development/python-modules/google-cloud-redis/default.nix index 4f37f90c2e378..f830ed3b6a6b0 100644 --- a/pkgs/development/python-modules/google-cloud-redis/default.nix +++ b/pkgs/development/python-modules/google-cloud-redis/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "google-cloud-redis"; - version = "2.12.1"; + version = "2.13.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-gQ3xG2QcnrSvl1hsvlcY9g77JW8fFk/Pci01tNqpAUs="; + hash = "sha256-BKDbtyn1wnzTXM6B7lgUCe17NLB9yaj1XhMbP4zE3Qo="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-spanner/default.nix b/pkgs/development/python-modules/google-cloud-spanner/default.nix index f3bb86ed27a12..be5506d35c88a 100644 --- a/pkgs/development/python-modules/google-cloud-spanner/default.nix +++ b/pkgs/development/python-modules/google-cloud-spanner/default.nix @@ -17,14 +17,14 @@ buildPythonPackage rec { pname = "google-cloud-spanner"; - version = "3.35.0"; + version = "3.35.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-svdQIWJVGgU6TkEOs73CMJJwhOS2m2S07e2DZxvFb1k="; + hash = "sha256-w/Aua6IS7WHRsmjiNFJZp9D6Huo8PspYDa1JGDRp3mc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-speech/default.nix b/pkgs/development/python-modules/google-cloud-speech/default.nix index b0502854d485a..224f98f47173a 100644 --- a/pkgs/development/python-modules/google-cloud-speech/default.nix +++ b/pkgs/development/python-modules/google-cloud-speech/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "google-cloud-speech"; - version = "2.19.0"; + version = "2.20.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-+k5exHjJt9bSdbeVWgTWx+IaYlJ55JrTV0wofoVWCpU="; + hash = "sha256-5sW4b/6OR0ucgraZ75AvdclHjnfkTqOd45l7PvivPi4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-videointelligence/default.nix b/pkgs/development/python-modules/google-cloud-videointelligence/default.nix index bbdb5833086db..5f81eeb549914 100644 --- a/pkgs/development/python-modules/google-cloud-videointelligence/default.nix +++ b/pkgs/development/python-modules/google-cloud-videointelligence/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "google-cloud-videointelligence"; - version = "2.11.1"; + version = "2.11.2"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-fsC8WTwrMJgXZHlOsI9TfYcM8Q5rKXuArTVM+pHpfqE="; + hash = "sha256-WlBpQ234J1rCA1jpPPCxUa+k6+DAKivZV6kLknnUArw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-vision/default.nix b/pkgs/development/python-modules/google-cloud-vision/default.nix index d20608201883e..90390af239a50 100644 --- a/pkgs/development/python-modules/google-cloud-vision/default.nix +++ b/pkgs/development/python-modules/google-cloud-vision/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "google-cloud-vision"; - version = "3.4.1"; + version = "3.4.2"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-VtBI7s8JvXGxMkbcRZfGsorH0RBQNGdf3O2T0lmi6f0="; + hash = "sha256-uLKI2lY094rCMXPdXV69hrorN85cTLrbVkyqeBiOBRg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/griffe/default.nix b/pkgs/development/python-modules/griffe/default.nix index c6f9680291150..cb04353ccf312 100644 --- a/pkgs/development/python-modules/griffe/default.nix +++ b/pkgs/development/python-modules/griffe/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "griffe"; - version = "0.26.0"; + version = "0.29.0"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -22,14 +22,12 @@ buildPythonPackage rec { owner = "mkdocstrings"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-p5JYBVvKvqKdYIYFh8ZiEgepJips9jg/6ao5yZ/fbcs="; + hash = "sha256-WZJogwxhSScJpTFVJaMn6LyIyZtOAxTnY3232NW0bds="; }; postPatch = '' substituteInPlace pyproject.toml \ - --replace 'dynamic = ["version"]' 'version = "${version}"' \ --replace 'license = "ISC"' 'license = {file = "LICENSE"}' \ - --replace 'version = {source = "scm"}' 'license-expression = "ISC"' ''; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/grpc-interceptor/default.nix b/pkgs/development/python-modules/grpc-interceptor/default.nix new file mode 100644 index 0000000000000..4aa8ffd4fe16c --- /dev/null +++ b/pkgs/development/python-modules/grpc-interceptor/default.nix @@ -0,0 +1,65 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pythonOlder +, poetry-core +, grpcio +, protobuf +, pytest-asyncio +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "grpc-interceptor"; + version = "0.15.1"; + format = "pyproject"; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "d5h-foss"; + repo = pname; + rev = "v${version}"; + sha256 = "md7pwlahF5kiaydLATdW7Yde8iVVcBEjCIGP5qRLwXw="; + }; + + postPatch = '' + substituteInPlace pyproject.toml \ + --replace "poetry.masonry.api" "poetry.core.masonry.api" + ''; + + nativeBuildInputs = [ + poetry-core + ]; + + propagatedBuildInputs = [ + grpcio + protobuf + ]; + + nativeCheckInputs = [ + pytest-asyncio + pytestCheckHook + ]; + + pythonImportsCheck = [ + "grpc_interceptor" + ]; + + meta = with lib; { + description = "Simplified gRPC interceptors"; + homepage = "https://github.com/d5h-foss/grpc-interceptor"; + changelog = "https://github.com/d5h-foss/grpc-interceptor/releases/tag/v${version}"; + longDescription = '' + Simplified Python gRPC interceptors. + + The Python gRPC package provides service interceptors, but they're a bit + hard to use because of their flexibility. The gRPC interceptors don't + have direct access to the request and response objects, or the service + context. Access to these are often desired, to be able to log data in the + request or response, or set status codes on the context. + ''; + license = licenses.mit; + maintainers = with maintainers; [ tomaskala ]; + }; +} diff --git a/pkgs/development/python-modules/gst-python/default.nix b/pkgs/development/python-modules/gst-python/default.nix index 9c30ebc68159f..386dd82e8296e 100644 --- a/pkgs/development/python-modules/gst-python/default.nix +++ b/pkgs/development/python-modules/gst-python/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "gst-python"; - version = "1.22.2"; + version = "1.22.3"; format = "other"; @@ -22,7 +22,7 @@ buildPythonPackage rec { src = fetchurl { url = "${meta.homepage}/src/gst-python/${pname}-${version}.tar.xz"; - hash = "sha256-vvKz2Czkvka3dbG7VjBcEAPuAbU1pTqC+f6JJJchU60="; + hash = "sha256-cL7T+r5jS8Yi723k5uscM7yc79ZL2rIA9voxa0aMcxw="; }; # Python 2.x is not supported. @@ -61,5 +61,6 @@ buildPythonPackage rec { homepage = "https://gstreamer.freedesktop.org"; description = "Python bindings for GStreamer"; license = licenses.lgpl2Plus; + maintainers = with maintainers; [ lilyinstarlight ]; }; } diff --git a/pkgs/development/python-modules/hahomematic/default.nix b/pkgs/development/python-modules/hahomematic/default.nix index eb1c3bf7e367d..1f2ca0e0f7c22 100644 --- a/pkgs/development/python-modules/hahomematic/default.nix +++ b/pkgs/development/python-modules/hahomematic/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "hahomematic"; - version = "2023.5.2"; + version = "2023.6.0"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "danielperna84"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-4P4ACoXapx1FzUWGCFu8U4iBTG0fUjLTlJXF2HzKyQg="; + hash = "sha256-xpkQSQGwf4RZHKwLdrOLW4yzECKY1vwxHYo+o3eOrhE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/hass-nabucasa/default.nix b/pkgs/development/python-modules/hass-nabucasa/default.nix index ddb9f123b00ea..c317dc2a7bd7f 100644 --- a/pkgs/development/python-modules/hass-nabucasa/default.nix +++ b/pkgs/development/python-modules/hass-nabucasa/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "hass-nabucasa"; - version = "0.66.2"; + version = "0.67.1"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "nabucasa"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-LlVT5WRd2uhUaghThJ5ghPbX40QjqTenUC4txMx3Jlo="; + hash = "sha256-/cu7+fMbe9kyWGGBGBwjsiA6PXoUJZ7IFzpEcnVSLn0="; }; postPatch = '' diff --git a/pkgs/development/python-modules/hickle/default.nix b/pkgs/development/python-modules/hickle/default.nix index 5374a9b6b53d3..6fcb1d166ac93 100644 --- a/pkgs/development/python-modules/hickle/default.nix +++ b/pkgs/development/python-modules/hickle/default.nix @@ -12,8 +12,10 @@ }: buildPythonPackage rec { - pname = "hickle"; + pname = "hickle"; version = "5.0.2"; + format = "setuptools"; + disabled = pythonOlder "3.5"; src = fetchPypi { @@ -28,11 +30,23 @@ buildPythonPackage rec { propagatedBuildInputs = [ h5py numpy dill ]; nativeCheckInputs = [ - pytestCheckHook scipy pandas astropy + pytestCheckHook + scipy + pandas + astropy ]; pythonImportsCheck = [ "hickle" ]; + disabledTests = [ + # broken in 5.0.2 with recent NumPy + # see https://github.com/telegraphic/hickle/issues/174 + "test_scalar_compression" + # broken in 5.0.2 with python 3.11 + # see https://github.com/telegraphic/hickle/issues/169 + "test_H5NodeFilterProxy" + ]; + meta = { description = "Serialize Python data to HDF5"; homepage = "https://github.com/telegraphic/hickle"; diff --git a/pkgs/development/python-modules/home-assistant-chip-clusters/default.nix b/pkgs/development/python-modules/home-assistant-chip-clusters/default.nix index b488dcb6b2d80..663d4e4c0b3b9 100644 --- a/pkgs/development/python-modules/home-assistant-chip-clusters/default.nix +++ b/pkgs/development/python-modules/home-assistant-chip-clusters/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "home-assistant-chip-clusters"; - version = "2023.5.2"; + version = "2023.5.3"; format = "wheel"; src = fetchPypi { @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "home_assistant_chip_clusters"; dist = "py3"; python = "py3"; - hash = "sha256-uOIrKEBOWDrne/sfso60QIrasH/++bShgN5XE4KHdMo="; + hash = "sha256-g3Hj21UPkHKKRXPewKLivWaUn1kXnVebayJYOmZfLBY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/home-assistant-chip-core/default.nix b/pkgs/development/python-modules/home-assistant-chip-core/default.nix index 35caf1e9d8d49..23f48886daa35 100644 --- a/pkgs/development/python-modules/home-assistant-chip-core/default.nix +++ b/pkgs/development/python-modules/home-assistant-chip-core/default.nix @@ -27,7 +27,7 @@ buildPythonPackage rec { pname = "home-assistant-chip-core"; - version = "2023.5.2"; + version = "2023.5.3"; format = "wheel"; disabled = pythonOlder "3.7"; @@ -36,11 +36,11 @@ buildPythonPackage rec { system = { "aarch64-linux" = { name = "aarch64"; - hash = "sha256-25TzM5UMkeGJe4NLUWQXeZ8TQvfdd9NAdsRIw870/0s="; + hash = "sha256-rGBlzYUydgFrt40UQTFlXMUOsEYlgGnvKrfT5WEZrAQ="; }; "x86_64-linux" = { name = "x86_64"; - hash = "sha256-KfQ/Ta+BqOHCrB+6ipaPWKkM7fH/ChtkrvtZdVrNpnI="; + hash = "sha256-8F5z1PAlfJidNeaiT0PN5odyTs99WN0rirXcUpH1mP0="; }; }.${stdenv.system} or (throw "Unsupported system"); in fetchPypi { diff --git a/pkgs/development/python-modules/huggingface-hub/default.nix b/pkgs/development/python-modules/huggingface-hub/default.nix index f637cbeba3232..2f0374644d40d 100644 --- a/pkgs/development/python-modules/huggingface-hub/default.nix +++ b/pkgs/development/python-modules/huggingface-hub/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "huggingface-hub"; - version = "0.14.1"; + version = "0.15.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "huggingface"; repo = "huggingface_hub"; rev = "refs/tags/v${version}"; - hash = "sha256-+BtXi+O+Ef4p4b+8FJCrZFsxX22ZYOPXylexFtsldnA="; + hash = "sha256-q30/oNP1NjyxiJuSfxyjFgciydImMUgPdGJ/tqVtwZk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/hvplot/default.nix b/pkgs/development/python-modules/hvplot/default.nix index 16dcf7e542350..8f1fd22369041 100644 --- a/pkgs/development/python-modules/hvplot/default.nix +++ b/pkgs/development/python-modules/hvplot/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "hvplot"; - version = "0.8.2"; + version = "0.8.3"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-/q2zlawBoL5fyJFVRSRGwrnEEqmdY+rAKQgxOBY9XBs="; + hash = "sha256-JiuN5WNEcN4jaUgVgvoHjx5Zj9fldYwoPhuGBawuhiM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/ibm-cloud-sdk-core/default.nix b/pkgs/development/python-modules/ibm-cloud-sdk-core/default.nix index 39cab90db288e..962658a15f2bc 100644 --- a/pkgs/development/python-modules/ibm-cloud-sdk-core/default.nix +++ b/pkgs/development/python-modules/ibm-cloud-sdk-core/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "ibm-cloud-sdk-core"; - version = "3.16.5"; + version = "3.16.6"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-wEBD1AILyVGK+ofQf/zZTu7keBUphVZ5HyOMbugvA+Y="; + hash = "sha256-lFpaMteVj8TBpcK1zLV95TwG3zY3PZG7QUzY0/LSF/c="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/imageio/default.nix b/pkgs/development/python-modules/imageio/default.nix index d919c00e74a6c..6989a12bf8650 100644 --- a/pkgs/development/python-modules/imageio/default.nix +++ b/pkgs/development/python-modules/imageio/default.nix @@ -26,7 +26,7 @@ buildPythonPackage rec { hash = "sha256-XbUIe+XIFOz34sfTChoVyX7Kl9jCbzHdxU12fUpDvOg="; }; - patches = [ + patches = lib.optionals (!stdenv.isDarwin) [ (substituteAll { src = ./libgl-path.patch; libgl = "${libGL.out}/lib/libGL${stdenv.hostPlatform.extensions.sharedLibrary}"; diff --git a/pkgs/development/python-modules/in-n-out/default.nix b/pkgs/development/python-modules/in-n-out/default.nix index cbec40b634c71..f431ced8efe3a 100644 --- a/pkgs/development/python-modules/in-n-out/default.nix +++ b/pkgs/development/python-modules/in-n-out/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "in-n-out"; - version = "0.1.6"; + version = "0.1.7"; format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-PuzjidORMFVlmFZbmnu9O92FoiuXrC8NNRyjwdodriY="; + hash = "sha256-g4Dw0ejB6BxcMpRZGgxNDeAyuY93UROVsIrAwv6vSqY="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/intake-parquet/default.nix b/pkgs/development/python-modules/intake-parquet/default.nix index 5c5f598a45267..c43db08d9fc9e 100644 --- a/pkgs/development/python-modules/intake-parquet/default.nix +++ b/pkgs/development/python-modules/intake-parquet/default.nix @@ -9,13 +9,13 @@ buildPythonPackage rec { pname = "intake-parquet"; - version = "0.2.3"; + version = "0.3.0"; src = fetchFromGitHub { owner = "intake"; repo = pname; rev = version; - sha256 = "037jd3qkk6dybssp570kzvaln2c6pk2avd2b5mll42gaxdxxnp02"; + sha256 = "sha256-zSwylXBKOM/tG5mwYtc0FmxwcKJ6j+lw1bxJqf57NY8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/intake/default.nix b/pkgs/development/python-modules/intake/default.nix index f5386ecd7628d..2dd71b515a006 100644 --- a/pkgs/development/python-modules/intake/default.nix +++ b/pkgs/development/python-modules/intake/default.nix @@ -26,7 +26,7 @@ buildPythonPackage rec { pname = "intake"; - version = "0.6.8"; + version = "0.7.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -35,7 +35,7 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-7A9wuuOQyGhdGj6T5VY+NrZjEOf/y8dCzSkHuPhNsKI="; + hash = "sha256-2LUblA8eVCOfVJ6BJayralNiv6EFt6MzR5ptKksVNA4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/intensity-normalization/default.nix b/pkgs/development/python-modules/intensity-normalization/default.nix index f784dc0679532..19253b17fe66c 100644 --- a/pkgs/development/python-modules/intensity-normalization/default.nix +++ b/pkgs/development/python-modules/intensity-normalization/default.nix @@ -19,7 +19,7 @@ buildPythonPackage rec { pname = "intensity-normalization"; - version = "2.2.3"; + version = "2.2.4"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -27,7 +27,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "intensity_normalization"; inherit version; - hash = "sha256-Yjd4hXmbT87xNKSqc6zkKNisOVhQzQAUZI5wBiI/UBk="; + hash = "sha256-s/trDIRoqLFj3NO+iv3E+AEB4grBAHDlEL6+TCdsgmg="; }; postPatch = '' diff --git a/pkgs/development/python-modules/ipyvue/default.nix b/pkgs/development/python-modules/ipyvue/default.nix index 26b79b633edb7..1444418c6625c 100644 --- a/pkgs/development/python-modules/ipyvue/default.nix +++ b/pkgs/development/python-modules/ipyvue/default.nix @@ -8,13 +8,13 @@ buildPythonPackage rec { pname = "ipyvue"; - version = "1.9.0"; + version = "1.9.1"; disabled = isPy27; src = fetchPypi { inherit pname version; - hash = "sha256-hBqNvg6dKx6P5Yo17nUA9ztmvQjz+ChNFWnD2OOPp3U="; + hash = "sha256-QhHWFb+OHRXoguqTN5+W7X1YaK0xyn4Ja+1M52fFees="; }; propagatedBuildInputs = [ ipywidgets ]; diff --git a/pkgs/development/python-modules/jaxopt/default.nix b/pkgs/development/python-modules/jaxopt/default.nix index b89d08b16da1e..70d802019e3f8 100644 --- a/pkgs/development/python-modules/jaxopt/default.nix +++ b/pkgs/development/python-modules/jaxopt/default.nix @@ -17,6 +17,8 @@ buildPythonPackage rec { pname = "jaxopt"; version = "0.5.5"; + format = "setuptools"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { @@ -50,6 +52,11 @@ buildPythonPackage rec { "jaxopt.tree_util" ]; + disabledTests = [ + # Stack frame issue + "test_bisect" + ]; + meta = with lib; { homepage = "https://jaxopt.github.io"; description = "Hardware accelerated, batchable and differentiable optimizers in JAX"; diff --git a/pkgs/development/python-modules/jupyterhub/default.nix b/pkgs/development/python-modules/jupyterhub/default.nix index 8424d5add9164..9dea973b042fe 100644 --- a/pkgs/development/python-modules/jupyterhub/default.nix +++ b/pkgs/development/python-modules/jupyterhub/default.nix @@ -154,8 +154,7 @@ buildPythonPackage rec { ]; meta = with lib; { - # darwin: E OSError: dlopen(/nix/store/43zml0mlr17r5jsagxr00xxx91hz9lky-openpam-20170430/lib/libpam.so, 6): image not found - broken = (stdenv.isLinux && stdenv.isAarch64) || stdenv.isDarwin; + broken = lib.versionAtLeast sqlalchemy.version "2.0"; description = "Serves multiple Jupyter notebook instances"; homepage = "https://jupyter.org/"; changelog = "https://github.com/jupyterhub/jupyterhub/blob/${version}/docs/source/changelog.md"; diff --git a/pkgs/development/python-modules/kaggle/default.nix b/pkgs/development/python-modules/kaggle/default.nix index a07450fab76ae..42cb7f83bb85b 100644 --- a/pkgs/development/python-modules/kaggle/default.nix +++ b/pkgs/development/python-modules/kaggle/default.nix @@ -50,6 +50,6 @@ buildPythonPackage rec { description = "Official API for https://www.kaggle.com, accessible using a command line tool implemented in Python 3"; homepage = "https://github.com/Kaggle/kaggle-api"; license = licenses.asl20; - maintainers = with maintainers; [ cdepillabout ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/kneed/default.nix b/pkgs/development/python-modules/kneed/default.nix new file mode 100644 index 0000000000000..1e4bc851968fd --- /dev/null +++ b/pkgs/development/python-modules/kneed/default.nix @@ -0,0 +1,53 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, hatchling +, numpy +, scipy +, matplotlib +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "kneed"; + version = "0.8.3"; + format = "pyproject"; + + src = fetchFromGitHub { + owner = "arvkevi"; + repo = "kneed"; + rev = "v${version}"; + sha256 = "K742mOnwTUY09EtbDYM9guqszK1wxgkofPhSjDyB8Ss="; + }; + + postPatch = '' + substituteInPlace pytest.ini \ + --replace "--cov=kneed" "" + ''; + + nativeBuildInputs = [ + hatchling + ]; + + propagatedBuildInputs = [ + numpy + scipy + ]; + + checkInputs = [ + pytestCheckHook + matplotlib + ]; + + disabledTestPaths = [ + # Fails when matplotlib is installed + "tests/test_no_matplotlib.py" + ]; + + meta = with lib; { + description = "Knee point detection in Python"; + homepage = "https://github.com/arvkevi/kneed"; + license = licenses.bsd3; + maintainers = with maintainers; [ tm-drtina ]; + }; +} diff --git a/pkgs/development/python-modules/langchain/default.nix b/pkgs/development/python-modules/langchain/default.nix index 0d278bf6e63df..9dee634305123 100644 --- a/pkgs/development/python-modules/langchain/default.nix +++ b/pkgs/development/python-modules/langchain/default.nix @@ -74,7 +74,7 @@ buildPythonPackage rec { pname = "langchain"; - version = "0.0.183"; + version = "0.0.188"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -83,7 +83,7 @@ buildPythonPackage rec { owner = "hwchase17"; repo = "langchain"; rev = "refs/tags/v${version}"; - hash = "sha256-AE3OKrp+F6z7j5rGaqeo+hwN5Wi6ik638WrxCtAJ7Ro="; + hash = "sha256-hf0pfWPXdutUKDzt56Uc0Q02TzScLAegQZ2gdR2IM/c="; }; postPatch = '' diff --git a/pkgs/development/python-modules/license-expression/default.nix b/pkgs/development/python-modules/license-expression/default.nix index cbff5928829a5..bd95899398f8e 100644 --- a/pkgs/development/python-modules/license-expression/default.nix +++ b/pkgs/development/python-modules/license-expression/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "license-expression"; - version = "30.1.0"; + version = "30.1.1"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "nexB"; repo = "license-expression"; rev = "refs/tags/v${version}"; - hash = "sha256-QPjVSSndgKlAdGY6nZjjOrnyyVfOVu8ggfBwGWi+RyE="; + hash = "sha256-5pRfFRQLxWmhEKoJZiC7gZbmW8BbqBNBWbdwFL0MtpM="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/lion-pytorch/default.nix b/pkgs/development/python-modules/lion-pytorch/default.nix index a5a554c1980ba..e23011aeb8371 100644 --- a/pkgs/development/python-modules/lion-pytorch/default.nix +++ b/pkgs/development/python-modules/lion-pytorch/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "lion-pytorch"; - version = "0.0.7"; + version = "0.1.2"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -15,7 +15,7 @@ buildPythonPackage rec { owner = "lucidrains"; repo = "lion-pytorch"; rev = "refs/tags/${version}"; - hash = "sha256-CSb0s3DKv/KpEmCkCR+Y8iwrLdCL9w9Pl6W46cPB420"; + hash = "sha256-9hdpRJvCpv3PeC7f0IXpHt6i+e6LiT0QUl5jeDGelQE="; }; propagatedBuildInputs = [ torch ]; diff --git a/pkgs/development/python-modules/looseversion/default.nix b/pkgs/development/python-modules/looseversion/default.nix index cc72639e9ad6e..84c64a3d54e0b 100644 --- a/pkgs/development/python-modules/looseversion/default.nix +++ b/pkgs/development/python-modules/looseversion/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "looseversion"; - version = "1.1.2"; + version = "1.2.0"; format = "flit"; src = fetchPypi { inherit version pname; - sha256 = "sha256-lNgL29C21XwRuIYUe6FgH30VMVcWIbgZM7NFN8vkaa0="; + sha256 = "sha256-xk5xwLKQMGg7Tqda7kMdstJcTm5TNZDlISnx2eUd4gQ="; }; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/maestral/default.nix b/pkgs/development/python-modules/maestral/default.nix index cab597d2aacde..1d7e6eb922504 100644 --- a/pkgs/development/python-modules/maestral/default.nix +++ b/pkgs/development/python-modules/maestral/default.nix @@ -27,7 +27,7 @@ buildPythonPackage rec { pname = "maestral"; - version = "1.7.2"; + version = "1.7.3"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -36,7 +36,7 @@ buildPythonPackage rec { owner = "SamSchott"; repo = "maestral"; rev = "refs/tags/v${version}"; - hash = "sha256-XyyEAeEQEc7MhGyXBBLZDqzBL7K+0dMMCKhr0iENvog="; + hash = "sha256-HOM7BlrKpqm16plTMLFpC6VScEoMlxCJFhZ0mcIFIcE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/markupsafe/default.nix b/pkgs/development/python-modules/markupsafe/default.nix index 7f2ae8af89ac4..e63af344a3a00 100644 --- a/pkgs/development/python-modules/markupsafe/default.nix +++ b/pkgs/development/python-modules/markupsafe/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "markupsafe"; - version = "2.1.2"; + version = "2.1.3"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -15,7 +15,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "MarkupSafe"; inherit version; - hash = "sha256-q8q8jCsmA21i1MdGOBpvfPYKr8xlMZitZ4MGmGsJRQ0="; + hash = "sha256-r1mO0y1q6G8bdHuCeDlYsaSrj2F7Bv5oeVx/Amq73K0="; }; nativeCheckInputs = [ @@ -25,6 +25,7 @@ buildPythonPackage rec { pythonImportsCheck = [ "markupsafe" ]; meta = with lib; { + changelog = "https://markupsafe.palletsprojects.com/en/${versions.majorMinor version}.x/changes/#version-${replaceStrings [ "." ] [ "-" ] version}"; description = "Implements a XML/HTML/XHTML Markup safe string"; homepage = "https://palletsprojects.com/p/markupsafe/"; license = licenses.bsd3; diff --git a/pkgs/development/python-modules/matplotlib/default.nix b/pkgs/development/python-modules/matplotlib/default.nix index 4df554f891604..d71b9cce7af9b 100644 --- a/pkgs/development/python-modules/matplotlib/default.nix +++ b/pkgs/development/python-modules/matplotlib/default.nix @@ -9,14 +9,11 @@ # build-system , pkg-config , pybind11 -, setuptools , setuptools-scm # native libraries , ffmpeg-headless -, fontconfig , freetype -, imagemagick , qhull # propagates @@ -76,7 +73,7 @@ let in buildPythonPackage rec { - version = "3.7.0"; + version = "3.7.1"; pname = "matplotlib"; format = "pyproject"; @@ -84,7 +81,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - hash = "sha256-j279MTQw1+9wo4oydigcsuhkazois7IesifaIOFeaBM="; + hash = "sha256-e3MwXyXqtFQb1+4Llth+U66cnxgjvlZZuAbNhXhv6II="; }; env.XDG_RUNTIME_DIR = "/tmp"; diff --git a/pkgs/development/python-modules/mautrix/default.nix b/pkgs/development/python-modules/mautrix/default.nix index 1ed86ca3a752b..b97730fbd4d19 100644 --- a/pkgs/development/python-modules/mautrix/default.nix +++ b/pkgs/development/python-modules/mautrix/default.nix @@ -21,7 +21,7 @@ buildPythonPackage rec { pname = "mautrix"; - version = "0.19.14"; + version = "0.19.16"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -30,7 +30,7 @@ buildPythonPackage rec { owner = "mautrix"; repo = "python"; rev = "refs/tags/v${version}"; - hash = "sha256-opaJR04ZF27NypDbhxSeim6/TusflNNdd/MQYhya1uk="; + hash = "sha256-aZlc4+J5Q+N9qEzGUMhsYguPdUy+E5I06wrjVyqvVDk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/meilisearch/default.nix b/pkgs/development/python-modules/meilisearch/default.nix index c7167d902de5c..42d54fb639752 100644 --- a/pkgs/development/python-modules/meilisearch/default.nix +++ b/pkgs/development/python-modules/meilisearch/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "meilisearch"; - version = "0.26.0"; + version = "0.28.0"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "meilisearch"; repo = "meilisearch-python"; rev = "refs/tags/v${version}"; - hash = "sha256-DhArrKIA9S/huO3QRjZNZ2xOpHybZgj6tIBKfRX6ZYg="; + hash = "sha256-gSJ7B2QaO6ei1wJwxpN/ciZ7VH6Bg1Qp8bUlrdLxtCs="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/meshtastic/default.nix b/pkgs/development/python-modules/meshtastic/default.nix index 3e4842d537718..bbe1f86eaaffa 100644 --- a/pkgs/development/python-modules/meshtastic/default.nix +++ b/pkgs/development/python-modules/meshtastic/default.nix @@ -20,7 +20,7 @@ buildPythonPackage rec { pname = "meshtastic"; - version = "2.1.6"; + version = "2.1.8"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -29,7 +29,7 @@ buildPythonPackage rec { owner = "meshtastic"; repo = "Meshtastic-python"; rev = "refs/tags/${version}"; - hash = "sha256-xfE4hfnf9NFA9iwce1onclLJOYgMWxuionmVUPDVEuw="; + hash = "sha256-ZIUR9YMoXhbpIDWXxKr6TyNkANuRiJvhkJILx7mWSrw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/mike/default.nix b/pkgs/development/python-modules/mike/default.nix new file mode 100644 index 0000000000000..f107d8e632bd8 --- /dev/null +++ b/pkgs/development/python-modules/mike/default.nix @@ -0,0 +1,60 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, git +, importlib-metadata +, importlib-resources +, jinja2 +, mkdocs +, pythonOlder +, pyyaml +, unittestCheckHook +, verspec +}: + +buildPythonPackage rec { + pname = "mike"; + version = "unstable-2023-05-06"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "jimporter"; + repo = pname; + rev = "300593c338b18f61f604d18457c351e166318020"; + hash = "sha256-Sjj2275IJDtLjG6uO9h4FbgxXTMgqD8c/rJj6iOxfuI="; + }; + + propagatedBuildInputs = [ + importlib-metadata + importlib-resources + jinja2 + mkdocs + pyyaml + verspec + ]; + + nativeCheckInputs = [ + git + unittestCheckHook + ]; + + preCheck = '' + export PATH=$out/bin:$PATH + ''; + + # Difficult to setup + doCheck = false; + + pythonImportsCheck = [ + "mike" + ]; + + meta = with lib; { + description = "Manage multiple versions of your MkDocs-powered documentation"; + homepage = "https://github.com/jimporter/mike"; + license = licenses.bsd3; + maintainers = with maintainers; [ marsam ]; + }; +} diff --git a/pkgs/development/python-modules/minikerberos/default.nix b/pkgs/development/python-modules/minikerberos/default.nix index c29a75377d8b3..d451c52283eb3 100644 --- a/pkgs/development/python-modules/minikerberos/default.nix +++ b/pkgs/development/python-modules/minikerberos/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "minikerberos"; - version = "0.4.0"; + version = "0.4.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-uB3J9DRZ23Hf31EkAUyxNTV7Ftgt0yjhEOiiv+Aft+w="; + hash = "sha256-WgH+VQfPe//X03SoXwC817GCMlB5Zw37w9Ol58N5yVI="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/minio/default.nix b/pkgs/development/python-modules/minio/default.nix index ec8fa863f2fe6..a036521a30e2c 100644 --- a/pkgs/development/python-modules/minio/default.nix +++ b/pkgs/development/python-modules/minio/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "minio"; - version = "7.1.14"; + version = "7.1.15"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "minio"; repo = "minio-py"; rev = "refs/tags/${version}"; - hash = "sha256-GT9XMHzEOg04DZ/saacBfqAKc5A755m2zblJvwQjd1w="; + hash = "sha256-eqQPOMEJOTdvYHaQ+ty+bDJn4/S5KnUOtF42O1wc+mw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/mizani/default.nix b/pkgs/development/python-modules/mizani/default.nix index 41b87e9e1ae1c..8e9975fb223dd 100644 --- a/pkgs/development/python-modules/mizani/default.nix +++ b/pkgs/development/python-modules/mizani/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "mizani"; - version = "0.9.1"; + version = "0.9.2"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "has2k1"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-mRJk1eJuP3CnZKKJhOam8llknqIB0H81LyBjyzFwk5I="; + hash = "sha256-6jdQxRqulE5hIzzmdr9kR5gsLrzt0lfJun5blJjTUY0="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/mkdocs-material/default.nix b/pkgs/development/python-modules/mkdocs-material/default.nix index 1af375762dc71..7f45b1ecc7ae5 100644 --- a/pkgs/development/python-modules/mkdocs-material/default.nix +++ b/pkgs/development/python-modules/mkdocs-material/default.nix @@ -19,7 +19,7 @@ buildPythonPackage rec { pname = "mkdocs-material"; - version = "9.1.8"; + version = "9.1.13"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -28,7 +28,7 @@ buildPythonPackage rec { owner = "squidfunk"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-a0AeRjS0fV4q3z6MPZBBv8Ffv61W3zHPrnPT4evBnaw="; + hash = "sha256-S+cCNcQR8Y1UGj+4Nfy9Z10N/9PRq13fSeR2YFntxWI="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/mkdocstrings-python/default.nix b/pkgs/development/python-modules/mkdocstrings-python/default.nix index adb6e2424ff21..656bde232a4c5 100644 --- a/pkgs/development/python-modules/mkdocstrings-python/default.nix +++ b/pkgs/development/python-modules/mkdocstrings-python/default.nix @@ -40,7 +40,6 @@ buildPythonPackage rec { postPatch = '' substituteInPlace pyproject.toml \ --replace 'license = "ISC"' 'license = {text = "ISC"}' \ - --replace 'dynamic = ["version"]' 'version = "${version}"' ''; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/msldap/default.nix b/pkgs/development/python-modules/msldap/default.nix index 4afd120430b88..472ff27efc96e 100644 --- a/pkgs/development/python-modules/msldap/default.nix +++ b/pkgs/development/python-modules/msldap/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "msldap"; - version = "0.4.7"; + version = "0.5.5"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-WMMqNSRDBwPQ/1ACgtuSvA50j+xNyjnxl7rTbx3uQ1w="; + hash = "sha256-ewE3rECsydNFgfh53X/oB/VyXd54nSpVsxMRZPGuR3I="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/nestedtext/default.nix b/pkgs/development/python-modules/nestedtext/default.nix index 5b5aa8bfc5b74..807060528eeea 100644 --- a/pkgs/development/python-modules/nestedtext/default.nix +++ b/pkgs/development/python-modules/nestedtext/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "nestedtext"; - version = "3.5"; + version = "3.6"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "KenKundert"; repo = "nestedtext"; rev = "refs/tags/v${version}"; - hash = "sha256-RGCcrGsDkBhThuUZd2LuuyXG9r1S7iOA75HYRxkwUrU="; + hash = "sha256-SHY/MTmYbNh3azkyvwEtuvT+V7YzfLi2B3FvBzv6Omo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/netdata/default.nix b/pkgs/development/python-modules/netdata/default.nix index 1127a8ba159eb..efb92f2bdeb3e 100644 --- a/pkgs/development/python-modules/netdata/default.nix +++ b/pkgs/development/python-modules/netdata/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "netdata"; - version = "1.0.3"; + version = "1.1.0"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -20,8 +20,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "home-assistant-ecosystem"; repo = "python-netdata"; - rev = version; - hash = "sha256-vrXXvCoZ1jErlxTcjGbtA8Uio7UDxnt3aNb9FQ0PkrU="; + rev = "refs/tags/${version}"; + hash = "sha256-XWlUSKGgndHtJjzA0mYvhCkJsRJ1SUbl8DGdmyFUmoo="; }; nativeBuildInputs = [ @@ -46,6 +46,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python API for interacting with Netdata"; homepage = "https://github.com/home-assistant-ecosystem/python-netdata"; + changelog = "https://github.com/home-assistant-ecosystem/python-netdata/releases/tag/${version}"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/numpy/default.nix b/pkgs/development/python-modules/numpy/default.nix index d18a93e1509c7..401a1120527ae 100644 --- a/pkgs/development/python-modules/numpy/default.nix +++ b/pkgs/development/python-modules/numpy/default.nix @@ -1,6 +1,5 @@ { lib , fetchPypi -, fetchpatch , python , buildPythonPackage , gfortran diff --git a/pkgs/development/python-modules/oca-port/default.nix b/pkgs/development/python-modules/oca-port/default.nix new file mode 100644 index 0000000000000..0a603b0b91c8d --- /dev/null +++ b/pkgs/development/python-modules/oca-port/default.nix @@ -0,0 +1,46 @@ +{ buildPythonPackage +, click +, fetchPypi +, gitpython +, lib +, nix-update-script +, requests +, setuptools-scm +, setuptools +}: + +buildPythonPackage rec { + pname = "oca-port"; + version = "0.13"; + format = "pyproject"; + + src = fetchPypi { + inherit version; + pname = "oca_port"; + hash = "sha256-9ihqjnGdBPasiRD2pZeaiibwzFQKI9t+s/zMzvyLLHQ="; + }; + + nativeBuildInputs = [ + setuptools + setuptools-scm + ]; + + propagatedBuildInputs = [ + click + gitpython + requests + ]; + + SETUPTOOLS_SCM_PRETEND_VERSION = version; + + passthru.updateScript = nix-update-script { }; + + pythonImportsCheck = [ "oca_port" ]; + + meta = with lib; { + description = "Tool helping to port an addon or missing commits of an addon from one branch to another"; + homepage = "https://github.com/OCA/oca-port"; + license = licenses.lgpl3Plus; + maintainers = with maintainers; [ yajo ]; + }; +} diff --git a/pkgs/development/python-modules/onvif-zeep-async/default.nix b/pkgs/development/python-modules/onvif-zeep-async/default.nix index c396941723b07..e4befe9384541 100644 --- a/pkgs/development/python-modules/onvif-zeep-async/default.nix +++ b/pkgs/development/python-modules/onvif-zeep-async/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "onvif-zeep-async"; - version = "3.1.8"; + version = "3.1.9"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-UiONj4ANsB5l2/ypWWfUK5ELoLsnUuyrFeldgITwIo4="; + hash = "sha256-szvRN2EmBV4BEM7EuL/Db5hwBtXwbn7M21h9NzS8l3k="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/opencensus-ext-azure/default.nix b/pkgs/development/python-modules/opencensus-ext-azure/default.nix new file mode 100644 index 0000000000000..132ce33264e2a --- /dev/null +++ b/pkgs/development/python-modules/opencensus-ext-azure/default.nix @@ -0,0 +1,42 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder +, azure-core +, azure-identity +, opencensus +, psutil +, requests +}: + +buildPythonPackage rec { + pname = "opencensus-ext-azure"; + version = "1.1.9"; + format = "setuptools"; + + disabled = pythonOlder "3.4"; + + src = fetchPypi { + inherit pname version; + hash = "sha256-UHYIt36djqq2/9X/EbfOuH9U5KapQMS4FDMbTRsDQVE="; + }; + + propagatedBuildInputs = [ + azure-core + azure-identity + opencensus + psutil + requests + ]; + + pythonImportsCheck = [ "opencensus.ext.azure" ]; + + doCheck = false; # tests are not included in the PyPi tarball + + meta = with lib; { + homepage = "https://github.com/census-instrumentation/opencensus-python/tree/master/contrib/opencensus-ext-azure"; + description = "OpenCensus Azure Monitor Exporter"; + license = licenses.asl20; + maintainers = with maintainers; [ billhuang evilmav ]; + }; +} diff --git a/pkgs/development/python-modules/openstacksdk/default.nix b/pkgs/development/python-modules/openstacksdk/default.nix index 211dcad192529..8969fc97bf8d0 100644 --- a/pkgs/development/python-modules/openstacksdk/default.nix +++ b/pkgs/development/python-modules/openstacksdk/default.nix @@ -19,14 +19,14 @@ buildPythonPackage rec { pname = "openstacksdk"; - version = "1.1.0"; + version = "1.2.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-zU0fxSMijgy5MIAA80vnwgTqsUvSeN3BFu76R9aNdJY="; + hash = "sha256-vEs0D96AUDuDm9pyoy631jDM3lwsH/SVKEDXn8pbzn8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/opentelemetry-api/default.nix b/pkgs/development/python-modules/opentelemetry-api/default.nix new file mode 100644 index 0000000000000..c38fb19faf36d --- /dev/null +++ b/pkgs/development/python-modules/opentelemetry-api/default.nix @@ -0,0 +1,58 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, deprecated +, hatchling +, importlib-metadata +, opentelemetry-test-utils +, setuptools +, pytestCheckHook +}: + +let + self = buildPythonPackage { + pname = "opentelemetry-api"; + version = "1.18.0"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "open-telemetry"; + repo = "opentelemetry-python"; + rev = "refs/tags/v${self.version}"; + hash = "sha256-h6XDzM29wYiC51S7OpBXvWFCfZ7DmIyGMG2pFjJV7pI="; + sparseCheckout = [ "/${self.pname}" ]; + } + "/${self.pname}"; + + format = "pyproject"; + + nativeBuildInputs = [ + hatchling + ]; + + propagatedBuildInputs = [ + deprecated + importlib-metadata + setuptools + ]; + + nativeCheckInputs = [ + opentelemetry-test-utils + pytestCheckHook + ]; + + pythonImportsCheck = [ "opentelemetry" ]; + + doCheck = false; + + # Enable tests via passthru to avoid cyclic dependency with opentelemetry-test-utils. + passthru.tests.${self.pname} = self.overridePythonAttrs { doCheck = true; }; + + meta = with lib; { + homepage = "https://opentelemetry.io"; + description = "OpenTelemetry Python API"; + license = licenses.asl20; + maintainers = teams.deshaw.members; + }; + }; +in self diff --git a/pkgs/development/python-modules/opentelemetry-exporter-otlp-proto-common/default.nix b/pkgs/development/python-modules/opentelemetry-exporter-otlp-proto-common/default.nix new file mode 100644 index 0000000000000..2cfd38f2d1b79 --- /dev/null +++ b/pkgs/development/python-modules/opentelemetry-exporter-otlp-proto-common/default.nix @@ -0,0 +1,49 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, hatchling +, opentelemetry-proto +, opentelemetry-sdk +, opentelemetry-test-utils +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "opentelemetry-exporter-otlp-proto-common"; + version = "1.18.0"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "open-telemetry"; + repo = "opentelemetry-python"; + rev = "refs/tags/v${version}"; + hash = "sha256-HNlkbDyYnr0/lDeY1xt0pRxqk+977ljgPdfJzAxL3AQ="; + sparseCheckout = [ "/exporter/${pname}" ]; + } + "/exporter/${pname}"; + + format = "pyproject"; + + nativeBuildInputs = [ + hatchling + ]; + + propagatedBuildInputs = [ + opentelemetry-sdk + opentelemetry-proto + ]; + + nativeCheckInputs = [ + opentelemetry-test-utils + pytestCheckHook + ]; + + pythonImportsCheck = [ "opentelemetry.exporter.otlp.proto.common" ]; + + meta = with lib; { + homepage = "https://github.com/open-telemetry/opentelemetry-python/tree/main/exporter/opentelemetry-exporter-otlp-proto-common"; + description = "OpenTelemetry Protobuf encoding"; + license = licenses.asl20; + maintainers = teams.deshaw.members; + }; +} diff --git a/pkgs/development/python-modules/opentelemetry-exporter-otlp-proto-grpc/default.nix b/pkgs/development/python-modules/opentelemetry-exporter-otlp-proto-grpc/default.nix new file mode 100644 index 0000000000000..1b12b8f265efd --- /dev/null +++ b/pkgs/development/python-modules/opentelemetry-exporter-otlp-proto-grpc/default.nix @@ -0,0 +1,58 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, backoff +, googleapis-common-protos +, grpcio +, hatchling +, opentelemetry-test-utils +, opentelemetry-exporter-otlp-proto-common +, pytest-grpc +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "opentelemetry-exporter-otlp-proto-grpc"; + version = "1.18.0"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "open-telemetry"; + repo = "opentelemetry-python"; + rev = "refs/tags/v${version}"; + hash = "sha256-feAmPL/G3ABIY5tBODlMJIBzxqg6Bl7imJB2EYtEp2o="; + sparseCheckout = [ "/exporter/${pname}" ]; + } + "/exporter/${pname}"; + + format = "pyproject"; + + nativeBuildInputs = [ + hatchling + ]; + + propagatedBuildInputs = [ + backoff + googleapis-common-protos + grpcio + opentelemetry-exporter-otlp-proto-common + ]; + + nativeCheckInputs = [ + opentelemetry-test-utils + pytestCheckHook + ]; + + disabledTestPaths = [ + "tests/performance/benchmarks/" + ]; + + pythonImportsCheck = [ "opentelemetry.exporter.otlp.proto.grpc" ]; + + meta = with lib; { + homepage = "https://github.com/open-telemetry/opentelemetry-python/tree/main/exporter/opentelemetry-exporter-otlp-proto-grpc"; + description = "OpenTelemetry Collector Protobuf over gRPC Exporter"; + license = licenses.asl20; + maintainers = teams.deshaw.members; + }; +} diff --git a/pkgs/development/python-modules/opentelemetry-exporter-otlp-proto-http/default.nix b/pkgs/development/python-modules/opentelemetry-exporter-otlp-proto-http/default.nix new file mode 100644 index 0000000000000..ccf4cc7a21013 --- /dev/null +++ b/pkgs/development/python-modules/opentelemetry-exporter-otlp-proto-http/default.nix @@ -0,0 +1,55 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, backoff +, googleapis-common-protos +, hatchling +, opentelemetry-exporter-otlp-proto-common +, opentelemetry-test-utils +, requests +, responses +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "opentelemetry-exporter-otlp-proto-http"; + version = "1.18.0"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "open-telemetry"; + repo = "opentelemetry-python"; + rev = "refs/tags/v${version}"; + hash = "sha256-r4jvIhRM9E4CuZyS/XvvYO+F9cPxip8ab57CUfip47Q="; + sparseCheckout = [ "/exporter/${pname}" ]; + } + "/exporter/${pname}"; + + format = "pyproject"; + + nativeBuildInputs = [ + hatchling + ]; + + propagatedBuildInputs = [ + backoff + googleapis-common-protos + opentelemetry-exporter-otlp-proto-common + requests + ]; + + nativeCheckInputs = [ + opentelemetry-test-utils + pytestCheckHook + responses + ]; + + pythonImportsCheck = [ "opentelemetry.exporter.otlp.proto.http" ]; + + meta = with lib; { + homepage = "https://github.com/open-telemetry/opentelemetry-python/tree/main/exporter/opentelemetry-exporter-otlp-proto-http"; + description = "OpenTelemetry Collector Protobuf over HTTP Exporter"; + license = licenses.asl20; + maintainers = teams.deshaw.members; + }; +} diff --git a/pkgs/development/python-modules/opentelemetry-exporter-otlp/default.nix b/pkgs/development/python-modules/opentelemetry-exporter-otlp/default.nix new file mode 100644 index 0000000000000..278298be12178 --- /dev/null +++ b/pkgs/development/python-modules/opentelemetry-exporter-otlp/default.nix @@ -0,0 +1,48 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, backoff +, hatchling +, opentelemetry-exporter-otlp-proto-grpc +, opentelemetry-exporter-otlp-proto-http +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "opentelemetry-exporter-otlp"; + version = "1.18.0"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "open-telemetry"; + repo = "opentelemetry-python"; + rev = "refs/tags/v${version}"; + hash = "sha256-ph9ahT6M8UBvuUJjk6nug68Ou/D7XuuXkfnKHEdD8x8="; + sparseCheckout = [ "/exporter/${pname}" ]; + } + "/exporter/${pname}"; + + format = "pyproject"; + + nativeBuildInputs = [ + hatchling + ]; + + propagatedBuildInputs = [ + opentelemetry-exporter-otlp-proto-grpc + opentelemetry-exporter-otlp-proto-http + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ "opentelemetry.exporter.otlp" ]; + + meta = with lib; { + homepage = "https://github.com/open-telemetry/opentelemetry-python/tree/main/exporter/opentelemetry-exporter-otlp"; + description = "OpenTelemetry Collector Exporters"; + license = licenses.asl20; + maintainers = teams.deshaw.members; + }; +} diff --git a/pkgs/development/python-modules/opentelemetry-exporter-prometheus/default.nix b/pkgs/development/python-modules/opentelemetry-exporter-prometheus/default.nix new file mode 100644 index 0000000000000..003241d74c1ca --- /dev/null +++ b/pkgs/development/python-modules/opentelemetry-exporter-prometheus/default.nix @@ -0,0 +1,51 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, hatchling +, opentelemetry-api +, opentelemetry-sdk +, opentelemetry-test-utils +, prometheus-client +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "opentelemetry-exporter-prometheus"; + version = "1.18.0"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "open-telemetry"; + repo = "opentelemetry-python"; + rev = "refs/tags/v${version}"; + hash = "sha256-vWVLUt3Ett04kqUyoTOBNvRj51/M35X83saBBxeOTZI="; + sparseCheckout = [ "/exporter/${pname}" ]; + } + "/exporter/${pname}"; + + format = "pyproject"; + + nativeBuildInputs = [ + hatchling + ]; + + propagatedBuildInputs = [ + opentelemetry-api + opentelemetry-sdk + prometheus-client + ]; + + nativeCheckInputs = [ + opentelemetry-test-utils + pytestCheckHook + ]; + + pythonImportsCheck = [ "opentelemetry.exporter.prometheus" ]; + + meta = with lib; { + homepage = "https://github.com/open-telemetry/opentelemetry-python/tree/main/exporter/opentelemetry-exporter-prometheus"; + description = "Prometheus Metric Exporter for OpenTelemetry"; + license = licenses.asl20; + maintainers = teams.deshaw.members; + }; +} diff --git a/pkgs/development/python-modules/opentelemetry-instrumentation-asgi/default.nix b/pkgs/development/python-modules/opentelemetry-instrumentation-asgi/default.nix new file mode 100644 index 0000000000000..3fb18175ab22e --- /dev/null +++ b/pkgs/development/python-modules/opentelemetry-instrumentation-asgi/default.nix @@ -0,0 +1,55 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, asgiref +, hatchling +, opentelemetry-api +, opentelemetry-instrumentation +, opentelemetry-semantic-conventions +, opentelemetry-test-utils +, opentelemetry-util-http +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "opentelemetry-instrumentation-asgi"; + version = "0.39b0"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "open-telemetry"; + repo = "opentelemetry-python-contrib"; + rev = "refs/tags/v${version}"; + hash = "sha256-BfNrbOQwyApdcKOVGF0LqzWOxzLkHZYiYdYVVPkGmdQ="; + sparseCheckout = [ "/instrumentation/${pname}" ]; + } + "/instrumentation/${pname}"; + + format = "pyproject"; + + nativeBuildInputs = [ + hatchling + ]; + + propagatedBuildInputs = [ + asgiref + opentelemetry-instrumentation + opentelemetry-api + opentelemetry-semantic-conventions + opentelemetry-util-http + ]; + + nativeCheckInputs = [ + opentelemetry-test-utils + pytestCheckHook + ]; + + pythonImportsCheck = [ "opentelemetry.instrumentation.asgi" ]; + + meta = with lib; { + homepage = "https://github.com/open-telemetry/opentelemetry-python-contrib/blob/main/instrumentation/opentelemetry-instrumentation-asgi"; + description = "ASGI instrumentation for OpenTelemetry"; + license = licenses.asl20; + maintainers = teams.deshaw.members; + }; +} diff --git a/pkgs/development/python-modules/opentelemetry-instrumentation-django/default.nix b/pkgs/development/python-modules/opentelemetry-instrumentation-django/default.nix new file mode 100644 index 0000000000000..2d8536a9037dd --- /dev/null +++ b/pkgs/development/python-modules/opentelemetry-instrumentation-django/default.nix @@ -0,0 +1,59 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, django +, hatchling +, opentelemetry-api +, opentelemetry-instrumentation +, opentelemetry-instrumentation-asgi +, opentelemetry-instrumentation-wsgi +, opentelemetry-semantic-conventions +, opentelemetry-test-utils +, opentelemetry-util-http +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "opentelemetry-instrumentation-django"; + version = "0.39b0"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "open-telemetry"; + repo = "opentelemetry-python-contrib"; + rev = "refs/tags/v${version}"; + hash = "sha256-5tyLFQTYuJBFAFZirqsaHXCw72Q3TigDctZZFi/2zdI="; + sparseCheckout = [ "/instrumentation/${pname}" ]; + } + "/instrumentation/${pname}"; + + format = "pyproject"; + + nativeBuildInputs = [ + hatchling + ]; + + propagatedBuildInputs = [ + django + opentelemetry-api + opentelemetry-instrumentation + opentelemetry-instrumentation-asgi + opentelemetry-instrumentation-wsgi + opentelemetry-semantic-conventions + opentelemetry-util-http + ]; + + nativeCheckInputs = [ + opentelemetry-test-utils + pytestCheckHook + ]; + + pythonImportsCheck = [ "opentelemetry.instrumentation.django" ]; + + meta = with lib; { + homepage = "https://github.com/open-telemetry/opentelemetry-python-contrib/blob/main/instrumentation/opentelemetry-instrumentation-django"; + description = "OpenTelemetry Instrumentation for Django"; + license = licenses.asl20; + maintainers = teams.deshaw.members; + }; +} diff --git a/pkgs/development/python-modules/opentelemetry-instrumentation-wsgi/default.nix b/pkgs/development/python-modules/opentelemetry-instrumentation-wsgi/default.nix new file mode 100644 index 0000000000000..b50674ea1b68c --- /dev/null +++ b/pkgs/development/python-modules/opentelemetry-instrumentation-wsgi/default.nix @@ -0,0 +1,53 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, hatchling +, opentelemetry-api +, opentelemetry-instrumentation +, opentelemetry-semantic-conventions +, opentelemetry-test-utils +, opentelemetry-util-http +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "opentelemetry-instrumentation-wsgi"; + version = "0.39b0"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "open-telemetry"; + repo = "opentelemetry-python-contrib"; + rev = "refs/tags/v${version}"; + hash = "sha256-DBZGXY8Y208YC/guk0qUB04UA/JFAtiv3kjsikskTRs="; + sparseCheckout = [ "/instrumentation/${pname}" ]; + } + "/instrumentation/${pname}"; + + format = "pyproject"; + + nativeBuildInputs = [ + hatchling + ]; + + propagatedBuildInputs = [ + opentelemetry-instrumentation + opentelemetry-api + opentelemetry-semantic-conventions + opentelemetry-util-http + ]; + + nativeCheckInputs = [ + opentelemetry-test-utils + pytestCheckHook + ]; + + pythonImportsCheck = [ "opentelemetry.instrumentation.wsgi" ]; + + meta = with lib; { + homepage = "https://github.com/open-telemetry/opentelemetry-python-contrib/blob/main/instrumentation/opentelemetry-instrumentation-wsgi"; + description = "WSGI Middleware for OpenTelemetry"; + license = licenses.asl20; + maintainers = teams.deshaw.members; + }; +} diff --git a/pkgs/development/python-modules/opentelemetry-instrumentation/default.nix b/pkgs/development/python-modules/opentelemetry-instrumentation/default.nix new file mode 100644 index 0000000000000..140ca386554c2 --- /dev/null +++ b/pkgs/development/python-modules/opentelemetry-instrumentation/default.nix @@ -0,0 +1,53 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, hatchling +, opentelemetry-api +, opentelemetry-sdk +, opentelemetry-test-utils +, setuptools +, wrapt +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "opentelemetry-instrumentation"; + version = "0.39b0"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "open-telemetry"; + repo = "opentelemetry-python-contrib"; + rev = "refs/tags/v${version}"; + hash = "sha256-+zk76A640nyd1L0I55JrMMs7EnQ+SPQdYGAFIyQFc6E="; + sparseCheckout = [ "/${pname}" ]; + } + "/${pname}"; + + format = "pyproject"; + + nativeBuildInputs = [ + hatchling + ]; + + propagatedBuildInputs = [ + opentelemetry-api + opentelemetry-sdk + setuptools + wrapt + ]; + + nativeCheckInputs = [ + opentelemetry-test-utils + pytestCheckHook + ]; + + pythonImportsCheck = [ "opentelemetry.instrumentation" ]; + + meta = with lib; { + homepage = "https://github.com/open-telemetry/opentelemetry-python-contrib/tree/main/opentelemetry-instrumentation"; + description = "Instrumentation Tools & Auto Instrumentation for OpenTelemetry Python"; + license = licenses.asl20; + maintainers = teams.deshaw.members; + }; +} diff --git a/pkgs/development/python-modules/opentelemetry-proto/default.nix b/pkgs/development/python-modules/opentelemetry-proto/default.nix new file mode 100644 index 0000000000000..b3df8b893989e --- /dev/null +++ b/pkgs/development/python-modules/opentelemetry-proto/default.nix @@ -0,0 +1,45 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, hatchling +, protobuf +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "opentelemetry-proto"; + version = "1.18.0"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "open-telemetry"; + repo = "opentelemetry-python"; + rev = "refs/tags/v${version}"; + hash = "sha256-6iB+QlBUqRvIJ9p38NYgP4icW2rYs1P3bNCxI95cOvs="; + sparseCheckout = [ "/${pname}" ]; + } + "/${pname}"; + + format = "pyproject"; + + nativeBuildInputs = [ + hatchling + ]; + + propagatedBuildInputs = [ + protobuf + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ "opentelemetry.proto" ]; + + meta = with lib; { + homepage = "https://github.com/open-telemetry/opentelemetry-python/tree/main/opentelemetry-proto"; + description = "OpenTelemetry Python Proto"; + license = licenses.asl20; + maintainers = teams.deshaw.members; + }; +} diff --git a/pkgs/development/python-modules/opentelemetry-sdk/default.nix b/pkgs/development/python-modules/opentelemetry-sdk/default.nix new file mode 100644 index 0000000000000..6ac7b8037fb7b --- /dev/null +++ b/pkgs/development/python-modules/opentelemetry-sdk/default.nix @@ -0,0 +1,66 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, flaky +, hatchling +, opentelemetry-api +, opentelemetry-semantic-conventions +, opentelemetry-test-utils +, setuptools +, typing-extensions +, pytestCheckHook +}: + +let + self = buildPythonPackage { + pname = "opentelemetry-sdk"; + version = "1.18.0"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "open-telemetry"; + repo = "opentelemetry-python"; + rev = "refs/tags/v${self.version}"; + hash = "sha256-YMFSmzuvm/VA9Fpe7pbF9mnGQHOQpobWMb1iGRt+d3w="; + sparseCheckout = [ "/${self.pname}" ]; + } + "/${self.pname}"; + + format = "pyproject"; + + nativeBuildInputs = [ + hatchling + ]; + + propagatedBuildInputs = [ + opentelemetry-api + opentelemetry-semantic-conventions + setuptools + typing-extensions + ]; + + nativeCheckInputs = [ + flaky + opentelemetry-test-utils + pytestCheckHook + ]; + + disabledTestPaths = [ + "tests/performance/benchmarks/" + ]; + + pythonImportsCheck = [ "opentelemetry.sdk" ]; + + doCheck = false; + + # Enable tests via passthru to avoid cyclic dependency with opentelemetry-test-utils. + passthru.tests.${self.pname} = self.overridePythonAttrs { doCheck = true; }; + + meta = with lib; { + homepage = "https://opentelemetry.io"; + description = "OpenTelemetry Python API and SDK"; + license = licenses.asl20; + maintainers = teams.deshaw.members; + }; + }; +in self diff --git a/pkgs/development/python-modules/opentelemetry-semantic-conventions/default.nix b/pkgs/development/python-modules/opentelemetry-semantic-conventions/default.nix new file mode 100644 index 0000000000000..d9743975bf6ca --- /dev/null +++ b/pkgs/development/python-modules/opentelemetry-semantic-conventions/default.nix @@ -0,0 +1,40 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, hatchling +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "opentelemetry-semantic-conventions"; + version = "1.18.0"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "open-telemetry"; + repo = "opentelemetry-python"; + rev = "refs/tags/v${version}"; + hash = "sha256-82L/tDoWgu0r+Li3CS3hjVR99DQQmA5yt3y85+37imI="; + sparseCheckout = [ "/${pname}" ]; + } + "/${pname}"; + + format = "pyproject"; + + nativeBuildInputs = [ + hatchling + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ "opentelemetry.semconv" ]; + + meta = with lib; { + homepage = "https://github.com/open-telemetry/opentelemetry-python/tree/main/opentelemetry-semantic-conventions"; + description = "OpenTelemetry Semantic Conventions"; + license = licenses.asl20; + maintainers = teams.deshaw.members; + }; +} diff --git a/pkgs/development/python-modules/opentelemetry-test-utils/default.nix b/pkgs/development/python-modules/opentelemetry-test-utils/default.nix new file mode 100644 index 0000000000000..0f78e511a8852 --- /dev/null +++ b/pkgs/development/python-modules/opentelemetry-test-utils/default.nix @@ -0,0 +1,45 @@ +{ lib +, callPackage +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, asgiref +, hatchling +, opentelemetry-api +, opentelemetry-sdk +}: + +buildPythonPackage rec { + pname = "opentelemetry-test-utils"; + version = "1.18.0"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "open-telemetry"; + repo = "opentelemetry-python"; + rev = "refs/tags/v${version}"; + hash = "sha256-WRcKTE3eVqOSQUi5gZ3du+RGw8CrMazXHrctdrjgzHo="; + sparseCheckout = [ "/tests/${pname}" ]; + } + "/tests/${pname}"; + + format = "pyproject"; + + nativeBuildInputs = [ + hatchling + ]; + + propagatedBuildInputs = [ + asgiref + opentelemetry-api + opentelemetry-sdk + ]; + + pythonImportsCheck = [ "opentelemetry.test" ]; + + meta = with lib; { + homepage = "https://github.com/open-telemetry/opentelemetry-python/tree/main/tests/opentelemetry-test-utils"; + description = "Test utilities for OpenTelemetry unit tests"; + license = licenses.asl20; + maintainers = teams.deshaw.members; + }; +} diff --git a/pkgs/development/python-modules/opentelemetry-util-http/default.nix b/pkgs/development/python-modules/opentelemetry-util-http/default.nix new file mode 100644 index 0000000000000..ddd25dccb7844 --- /dev/null +++ b/pkgs/development/python-modules/opentelemetry-util-http/default.nix @@ -0,0 +1,51 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, hatchling +, opentelemetry-instrumentation +, opentelemetry-sdk +, opentelemetry-semantic-conventions +, opentelemetry-test-utils +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "opentelemetry-util-http"; + version = "0.39b0"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "open-telemetry"; + repo = "opentelemetry-python-contrib"; + rev = "refs/tags/v${version}"; + hash = "sha256-C20/M5wimQec/8tTKx7+jkIYgfgNPtU9lkPKliIM3Uk="; + sparseCheckout = [ "/util/${pname}" ]; + } + "/util/${pname}"; + + format = "pyproject"; + + nativeBuildInputs = [ + hatchling + ]; + + propagatedBuildInputs = [ + opentelemetry-instrumentation + opentelemetry-sdk + opentelemetry-semantic-conventions + ]; + + nativeCheckInputs = [ + opentelemetry-test-utils + pytestCheckHook + ]; + + pythonImportsCheck = [ "opentelemetry.util.http" ]; + + meta = with lib; { + homepage = "https://github.com/open-telemetry/opentelemetry-python-contrib/tree/main/util/opentelemetry-util-http"; + description = "Web util for OpenTelemetry"; + license = licenses.asl20; + maintainers = teams.deshaw.members; + }; +} diff --git a/pkgs/development/python-modules/pandas/default.nix b/pkgs/development/python-modules/pandas/default.nix index b852a7f82c03f..68d925cc2a9f7 100644 --- a/pkgs/development/python-modules/pandas/default.nix +++ b/pkgs/development/python-modules/pandas/default.nix @@ -8,11 +8,6 @@ , numpy , python-dateutil , pytz -, scipy -, sqlalchemy -, tables -, xlrd -, xlwt # Test inputs , glibcLocales , hypothesis diff --git a/pkgs/development/python-modules/pdm-backend/default.nix b/pkgs/development/python-modules/pdm-backend/default.nix index 5cff0cb03485f..b8f46c9595bd0 100644 --- a/pkgs/development/python-modules/pdm-backend/default.nix +++ b/pkgs/development/python-modules/pdm-backend/default.nix @@ -40,6 +40,8 @@ buildPythonPackage rec { setuptools ]; + setupHook = ./setup-hook.sh; + meta = with lib; { homepage = "https://github.com/pdm-project/pdm-backend"; changelog = "https://github.com/pdm-project/pdm-backend/releases/tag/${version}"; diff --git a/pkgs/development/python-modules/pdm-backend/setup-hook.sh b/pkgs/development/python-modules/pdm-backend/setup-hook.sh new file mode 100644 index 0000000000000..aca0c555c76cc --- /dev/null +++ b/pkgs/development/python-modules/pdm-backend/setup-hook.sh @@ -0,0 +1,8 @@ +version-pretend-hook() { + echo "Setting PDM_BUILD_SCM_VERSION to $version" + export PDM_BUILD_SCM_VERSION=$version +} + +if [ -z "${dontSetPdmBackendVersion-}" ]; then + preBuildHooks+=(version-pretend-hook) +fi diff --git a/pkgs/development/python-modules/peaqevcore/default.nix b/pkgs/development/python-modules/peaqevcore/default.nix index f2f73ee9c17ae..4c98ef42f099d 100644 --- a/pkgs/development/python-modules/peaqevcore/default.nix +++ b/pkgs/development/python-modules/peaqevcore/default.nix @@ -6,19 +6,18 @@ buildPythonPackage rec { pname = "peaqevcore"; - version = "15.3.1"; + version = "18.1.4"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-nbDySNyHsy/5RaN7L/lbMunfXp+Ohyq0sZWPXirFbqs="; + hash = "sha256-WjsB8NkHWejwDkZ8Aphai4BW+bbB7hSxkKwfeYCE7qk="; }; postPatch = '' - substituteInPlace setup.py \ - --replace "pytest" "" + sed -i "/extras_require/d" setup.py ''; # Tests are not shipped and source is not tagged @@ -32,6 +31,7 @@ buildPythonPackage rec { meta = with lib; { description = "Library for interacting with Peaqev car charging"; homepage = "https://github.com/elden1337/peaqev-core"; + changelog = "https://github.com/elden1337/peaqev-core/releases/tag/${version}"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/peewee-migrate/default.nix b/pkgs/development/python-modules/peewee-migrate/default.nix index a143ddb8359ca..2ea6f43a08100 100644 --- a/pkgs/development/python-modules/peewee-migrate/default.nix +++ b/pkgs/development/python-modules/peewee-migrate/default.nix @@ -17,14 +17,14 @@ buildPythonPackage rec { pname = "peewee-migrate"; - version = "1.7.1"; + version = "1.10.0"; format = "pyproject"; src = fetchFromGitHub { owner = "klen"; repo = "peewee_migrate"; rev = "refs/tags/${version}"; - hash = "sha256-s7/Ev4nAKUr5OBgziETVCtjlxvBoeoZXriUBuAUi4eE="; + hash = "sha256-YDL7J/LmCRz6kRHQ0NrnVnvtS3rFkH08umjPI95mn6w="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/platformdirs/default.nix b/pkgs/development/python-modules/platformdirs/default.nix index c807faff9d0b1..9d2deb68d4429 100644 --- a/pkgs/development/python-modules/platformdirs/default.nix +++ b/pkgs/development/python-modules/platformdirs/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "platformdirs"; - version = "3.0.0"; + version = "3.5.1"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-RiZ26BGqS8nN5qHpUt7LIXSck/cGM8qlet3uL81TyPo="; + hash = "sha256-/qi22jiF+P7XcG/D+dxoOrHk89amdBoGewrTqZZOsoM="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/playwright/default.nix b/pkgs/development/python-modules/playwright/default.nix index 35deda3f92b78..bdd7846c7623b 100644 --- a/pkgs/development/python-modules/playwright/default.nix +++ b/pkgs/development/python-modules/playwright/default.nix @@ -15,7 +15,8 @@ let in buildPythonPackage rec { pname = "playwright"; - version = "1.32.1"; + # run ./pkgs/development/python-modules/playwright/update.sh to update + version = "1.34.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -23,7 +24,7 @@ buildPythonPackage rec { owner = "microsoft"; repo = "playwright-python"; rev = "v${version}"; - hash = "sha256-rguobFaepTOL2duHRdFV5o2JSsBlYiA7rY3/RyHvoMc="; + hash = "sha256-GIxMVuSSJsRDsHDOPnJsDsTcghGYtIFpRS5u7HJd+zY="; }; patches = [ diff --git a/pkgs/development/python-modules/playwright/update.sh b/pkgs/development/python-modules/playwright/update.sh index 51dd8723c8515..464f9a3cba05c 100755 --- a/pkgs/development/python-modules/playwright/update.sh +++ b/pkgs/development/python-modules/playwright/update.sh @@ -1,8 +1,10 @@ #!/usr/bin/env nix-shell -#!nix-shell -i bash -p curl gnused nix-prefetch common-updater-scripts +#!nix-shell -i bash -p curl gnused nix-prefetch common-updater-scripts node2nix set -euo pipefail root="$(dirname "$(readlink -f "$0")")" +driver_file="$root/../../web/playwright/driver.nix" +playwright_test="$root/../../web/playwright-test" version=$(curl ${GITHUB_TOKEN:+" -u \":$GITHUB_TOKEN\""} -s https://api.github.com/repos/microsoft/playwright-python/releases/latest | jq -r '.tag_name | sub("^v"; "")') @@ -13,11 +15,11 @@ setup_py_url="https://github.com/microsoft/playwright-python/raw/v${version}/set driver_version=$(curl -Ls "$setup_py_url" | grep '^driver_version =' | grep -Eo '[0-9]+\.[0-9]+\.[0-9]+') fetch_driver_arch() { - nix-prefetch-url "https://playwright.azureedge.net/builds/driver/playwright-${version}-${1}.zip" + nix-prefetch-url "https://playwright.azureedge.net/builds/driver/playwright-${driver_version}-${1}.zip" } replace_sha() { - sed -i "s|$1 = \".\{44,52\}\"|$1 = \"$2\"|" "$root/default.nix" + sed -i "s|$1 = \".\{44,52\}\"|$1 = \"$2\"|" "$driver_file" } # Replace SHAs for the driver downloads @@ -27,5 +29,7 @@ replace_sha "aarch64-linux" "$(fetch_driver_arch "linux-arm64")" replace_sha "aarch64-darwin" "$(fetch_driver_arch "mac-arm64")" # Update the version stamps -sed -i "s/driverVersion = \"[^\$]*\"/driverVersion = \"$driver_version\"/" "$root/default.nix" +sed -i "s/version =\s*\"[^\$]*\"/version = \"$driver_version\"/" "$driver_file" +sed -i "s/\"@playwright\/test\": \"[^\$]*\"/\"@playwright\/test\": \"$driver_version\"/" "$playwright_test/node-packages.json" +(cd "$playwright_test"; node2nix -i node-packages.json) update-source-version playwright "$version" --rev="v$version" diff --git a/pkgs/development/python-modules/plexapi/default.nix b/pkgs/development/python-modules/plexapi/default.nix index 7ca7e075ea182..bdcfb2f4eba7b 100644 --- a/pkgs/development/python-modules/plexapi/default.nix +++ b/pkgs/development/python-modules/plexapi/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "plexapi"; - version = "4.13.4"; + version = "4.14.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "pkkid"; repo = "python-plexapi"; rev = "refs/tags/${version}"; - hash = "sha256-yq1tQ6xJn+IxrKXwUVeLhki6sdkwzu9hHSILsLJdPPY="; + hash = "sha256-wSM8YCKRvwEs7fEjUjOp52PdF2Y1kxnX/Xpf0KdXR2k="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/plumbum/default.nix b/pkgs/development/python-modules/plumbum/default.nix index 6bc5ec7da710f..e6ffa43b32935 100644 --- a/pkgs/development/python-modules/plumbum/default.nix +++ b/pkgs/development/python-modules/plumbum/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "plumbum"; - version = "1.8.1"; + version = "1.8.2"; format = "pyproject"; src = fetchFromGitHub { owner = "tomerfiliba"; repo = "plumbum"; rev = "refs/tags/v${version}"; - hash = "sha256-5nRI9y2Y7itkqDdLRSX4qWfh96WmhqdP1Eo7HLoRHaQ="; + hash = "sha256-b8JcGRHiZSv/ViyEogpLgGXOMHHSC+cjWT0FqhkolcA="; }; postPatch = '' diff --git a/pkgs/development/python-modules/poetry-core/default.nix b/pkgs/development/python-modules/poetry-core/default.nix index 9e7e7bd978ff1..daf45528202f9 100644 --- a/pkgs/development/python-modules/poetry-core/default.nix +++ b/pkgs/development/python-modules/poetry-core/default.nix @@ -73,6 +73,8 @@ buildPythonPackage rec { "poetry" ]; + env.NIX_CFLAGS_COMPILE = lib.optionalString stdenv.cc.isClang "-Wno-int-conversion"; + meta = with lib; { changelog = "https://github.com/python-poetry/poetry-core/blob/${src.rev}/CHANGELOG.md"; description = "Core utilities for Poetry"; diff --git a/pkgs/development/python-modules/policyuniverse/default.nix b/pkgs/development/python-modules/policyuniverse/default.nix index ad73aab2121eb..027e2da7a5383 100644 --- a/pkgs/development/python-modules/policyuniverse/default.nix +++ b/pkgs/development/python-modules/policyuniverse/default.nix @@ -6,14 +6,14 @@ buildPythonPackage rec { pname = "policyuniverse"; - version = "1.5.0.20230523"; + version = "1.5.1.20230526"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-dnyP9EiGD2zVI5sGcswwC15ti+lrnjEnb08w3WM/xmQ="; + hash = "sha256-80Q1qkCAD3VwNk0pblPWni3qY/8Dc2YrOLDjPrg/2Os="; }; # Tests are not shipped and there are no GitHub tags diff --git a/pkgs/development/python-modules/pontos/default.nix b/pkgs/development/python-modules/pontos/default.nix index d8a2a3f0ef033..b069d8e1598d2 100644 --- a/pkgs/development/python-modules/pontos/default.nix +++ b/pkgs/development/python-modules/pontos/default.nix @@ -65,6 +65,8 @@ buildPythonPackage rec { # Network access "test_fail_sign_on_upload_fail" "test_successfully_sign" + # calls git log, but our fetcher removes .git + "test_git_error" ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/pySmartDL/default.nix b/pkgs/development/python-modules/pySmartDL/default.nix index 66503bba99dc6..cfad2238fbd01 100644 --- a/pkgs/development/python-modules/pySmartDL/default.nix +++ b/pkgs/development/python-modules/pySmartDL/default.nix @@ -20,6 +20,6 @@ buildPythonPackage rec { description = "A Smart Download Manager for Python"; license = licenses.unlicense; platforms = platforms.linux; - maintainers = with maintainers; [ WeebSorceress ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/pycaption/default.nix b/pkgs/development/python-modules/pycaption/default.nix index ad1c7c1cec501..e1e1e37f0c659 100644 --- a/pkgs/development/python-modules/pycaption/default.nix +++ b/pkgs/development/python-modules/pycaption/default.nix @@ -38,6 +38,8 @@ buildPythonPackage rec { pytestCheckHook ]; + doCheck = false; + meta = with lib; { changelog = "https://github.com/pbs/pycaption/blob/${version}/docs/changelog.rst"; description = "Closed caption converter"; diff --git a/pkgs/development/python-modules/pydantic/default.nix b/pkgs/development/python-modules/pydantic/default.nix index 3674c0d74974c..1a2851158c52c 100644 --- a/pkgs/development/python-modules/pydantic/default.nix +++ b/pkgs/development/python-modules/pydantic/default.nix @@ -18,6 +18,7 @@ , withDocs ? (stdenv.hostPlatform == stdenv.buildPlatform && !stdenv.isDarwin && pythonAtLeast "3.10") , ansi2html , markdown-include +, mike , mkdocs , mkdocs-exclude , mkdocs-material @@ -31,7 +32,7 @@ buildPythonPackage rec { pname = "pydantic"; - version = "1.10.7"; + version = "1.10.8"; format = "setuptools"; outputs = [ @@ -43,10 +44,10 @@ buildPythonPackage rec { disabled = pythonOlder "3.7"; src = fetchFromGitHub { - owner = "samuelcolvin"; + owner = "pydantic"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-7X7rlHJ5Q01CuB9FZzoUfyfwx6AMXtE1BV5t+LnZKIM="; + hash = "sha256-4oJoDlP1grLblF0ppqYM1GYEyNMEM9FssFQjacipmms="; }; postPatch = '' @@ -65,6 +66,7 @@ buildPythonPackage rec { ansi2html markdown-include mdx-truly-sane-lists + mike mkdocs mkdocs-exclude mkdocs-material @@ -120,8 +122,9 @@ buildPythonPackage rec { pythonImportsCheck = [ "pydantic" ]; meta = with lib; { - homepage = "https://github.com/samuelcolvin/pydantic"; description = "Data validation and settings management using Python type hinting"; + homepage = "https://github.com/pydantic/pydantic"; + changelog = "https://github.com/pydantic/pydantic/blob/v${version}/HISTORY.md"; license = licenses.mit; maintainers = with maintainers; [ wd15 ]; }; diff --git a/pkgs/development/python-modules/pydelijn/default.nix b/pkgs/development/python-modules/pydelijn/default.nix index 151a0c5a9669f..728160fe8d1fa 100644 --- a/pkgs/development/python-modules/pydelijn/default.nix +++ b/pkgs/development/python-modules/pydelijn/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "pydelijn"; - version = "1.0.0"; + version = "1.1.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "c5b6565c50d4f97d28baca9faf487281c2a5db635060b69f659e27c28a1a6e93"; + sha256 = "sha256-xyBq2h3ipUarkjCXq9GIbY7bhsf9729aQwHde3o5K6g="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pydrive2/default.nix b/pkgs/development/python-modules/pydrive2/default.nix index 1851de19bcf8a..9de7758557d0d 100644 --- a/pkgs/development/python-modules/pydrive2/default.nix +++ b/pkgs/development/python-modules/pydrive2/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "pydrive2"; - version = "1.15.3"; + version = "1.15.4"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "PyDrive2"; inherit version; - hash = "sha256-qPUNmWydx25RwAO8wHcP6XIi+gH7Dm6p0CfwrPfs564="; + hash = "sha256-DAEbdOvCTzxspyggYmt38d/groj1dAxaXPlug915upk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pydyf/default.nix b/pkgs/development/python-modules/pydyf/default.nix index 402f8c6b1baff..64e5062736e4f 100644 --- a/pkgs/development/python-modules/pydyf/default.nix +++ b/pkgs/development/python-modules/pydyf/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "pydyf"; - version = "0.5.0"; + version = "0.6.0"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-UedRrhUEA3wfwfSBURkTewEYAs1fbDU52wZsRVsUp+E="; + hash = "sha256-tEo4hV1+R7dAs80xq2Oi9bmyeTkx1QsMyu07t7hpEvw="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pyezviz/default.nix b/pkgs/development/python-modules/pyezviz/default.nix index 873762bddae56..b82a15d4df9ed 100644 --- a/pkgs/development/python-modules/pyezviz/default.nix +++ b/pkgs/development/python-modules/pyezviz/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "pyezviz"; - version = "0.2.0.15"; + version = "0.2.0.17"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "baqs"; repo = "pyEzviz"; rev = "refs/tags/${version}"; - hash = "sha256-za3LVCOsF5Nw/hvhqKWRkXw5o7ozqJnTbd274x113IE="; + hash = "sha256-Yc1M/O08PlRb0+YIB4etscaWMnb+r9fkMje94Tvcwus="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyipp/default.nix b/pkgs/development/python-modules/pyipp/default.nix index 15ad2d5a75fa4..7970db4cbe3e8 100644 --- a/pkgs/development/python-modules/pyipp/default.nix +++ b/pkgs/development/python-modules/pyipp/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "pyipp"; - version = "0.13.0"; + version = "0.14.1"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "ctalkington"; repo = "python-ipp"; rev = version; - hash = "sha256-lVpXtPxZZCyWycmkXZTMo5WTPtlehNY5IX7tiyIb1uM="; + hash = "sha256-l8zDgqv8+9r15dt1YeuAYq2GCl9JsrtNRjPlQ9A7H9c="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pyomo/default.nix b/pkgs/development/python-modules/pyomo/default.nix index b7b35a7657314..0d738ef469efb 100644 --- a/pkgs/development/python-modules/pyomo/default.nix +++ b/pkgs/development/python-modules/pyomo/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "pyomo"; - version = "6.5.0"; + version = "6.6.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { repo = "pyomo"; owner = "pyomo"; rev = "refs/tags/${version}"; - hash = "sha256-ZsoWz+35hQS15dbpe1IOzft6JwZygKjv5AQWjVe+8kQ="; + hash = "sha256-1FSu5ejFjjNTuvaFU/UqAI/817HkrOA1Hczq8gcPQGA="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyopencl/default.nix b/pkgs/development/python-modules/pyopencl/default.nix index 8a233014155f6..03549ea2977d0 100644 --- a/pkgs/development/python-modules/pyopencl/default.nix +++ b/pkgs/development/python-modules/pyopencl/default.nix @@ -13,7 +13,9 @@ , platformdirs , pybind11 , pytest +, pytestCheckHook , pytools +, setuptools , six }: @@ -22,9 +24,17 @@ let if stdenv.isDarwin then [ mesa_drivers.dev ] else [ ocl-icd ]; in buildPythonPackage rec { pname = "pyopencl"; - version = "2022.3.1"; + version = "2023.1"; + + format = "pyproject"; + + src = fetchPypi { + inherit pname version; + hash = "sha256-2d5gcnKRmlB6nCTD3+7q/nLAX3zWyeN7IRno7jxTqJE="; + }; + + nativeBuildInputs = [ setuptools ]; - nativeCheckInputs = [ pytest ]; buildInputs = [ opencl-headers pybind11 ] ++ os-specific-buildInputs; propagatedBuildInputs = [ @@ -38,15 +48,7 @@ in buildPythonPackage rec { six ]; - src = fetchPypi { - inherit pname version; - hash = "sha256-Sj2w/mG1zclSZ1Jt7r1xp+HXlWlNSw/idh8GMLzKNiE="; - }; - - # py.test is not needed during runtime, so remove it from `install_requires` - postPatch = '' - substituteInPlace setup.py --replace "pytest>=2" "" - ''; + nativeCheckInputs = [ pytestCheckHook ]; preBuild = '' export HOME=$(mktemp -d) @@ -55,6 +57,8 @@ in buildPythonPackage rec { # gcc: error: pygpu_language_opencl.cpp: No such file or directory doCheck = false; + pythonImportsCheck = [ "pyopencl" ]; + meta = with lib; { description = "Python wrapper for OpenCL"; homepage = "https://github.com/pyopencl/pyopencl"; diff --git a/pkgs/development/python-modules/pyopengl/default.nix b/pkgs/development/python-modules/pyopengl/default.nix index ecc0e307e7f31..94b5d38d3fc8a 100644 --- a/pkgs/development/python-modules/pyopengl/default.nix +++ b/pkgs/development/python-modules/pyopengl/default.nix @@ -18,17 +18,14 @@ buildPythonPackage rec { propagatedBuildInputs = [ pillow ]; patchPhase = let - ext = stdenv.hostPlatform.extensions.sharedLibrary; in '' + ext = stdenv.hostPlatform.extensions.sharedLibrary; in lib.optionalString (!stdenv.isDarwin) '' # Theses lines are patching the name of dynamic libraries # so pyopengl can find them at runtime. substituteInPlace OpenGL/platform/glx.py \ --replace "'GL'" "'${pkgs.libGL}/lib/libGL${ext}'" \ --replace "'GLU'" "'${pkgs.libGLU}/lib/libGLU${ext}'" \ --replace "'glut'" "'${pkgs.freeglut}/lib/libglut${ext}'" - substituteInPlace OpenGL/platform/darwin.py \ - --replace "'OpenGL'" "'${pkgs.libGL}/lib/libGL${ext}'" \ - --replace "'GLUT'" "'${pkgs.freeglut}/lib/libglut${ext}'" - + '' + '' # https://github.com/NixOS/nixpkgs/issues/76822 # pyopengl introduced a new "robust" way of loading libraries in 3.1.4. # The later patch of the filepath does not work anymore because diff --git a/pkgs/development/python-modules/pypykatz/default.nix b/pkgs/development/python-modules/pypykatz/default.nix index 59253178661cd..429373b47a36d 100644 --- a/pkgs/development/python-modules/pypykatz/default.nix +++ b/pkgs/development/python-modules/pypykatz/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "pypykatz"; - version = "0.6.6"; + version = "0.6.8"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-fPeEKTfRL142RIMSQxpByIAy09sXlmDjIATikc82Iuw="; + hash = "sha256-uOOPDVlx8EKgkCJmZOQxIlI0UBMNzuh/ESoIoa2TmNM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyquil/default.nix b/pkgs/development/python-modules/pyquil/default.nix index b79ed9dd56229..c822014dd843f 100644 --- a/pkgs/development/python-modules/pyquil/default.nix +++ b/pkgs/development/python-modules/pyquil/default.nix @@ -1,5 +1,6 @@ { lib , buildPythonPackage +, deprecated , fetchFromGitHub , importlib-metadata , ipython @@ -20,13 +21,15 @@ , retry , rpcq , scipy +, tenacity +, types-deprecated , types-python-dateutil , types-retry }: buildPythonPackage rec { pname = "pyquil"; - version = "3.5.0"; + version = "3.5.4"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -35,7 +38,7 @@ buildPythonPackage rec { owner = "rigetti"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-Fr9SnAzDHaSKp0AYra/gCZOJ5Fzcx1EO56ahZQZP2Ss="; + hash = "sha256-GQ7vzuUu0PCeLkqKWUSNJyJ01wseOwNL2jJaVTNGF9s="; }; pythonRelaxDeps = [ @@ -49,6 +52,7 @@ buildPythonPackage rec { ]; propagatedBuildInputs = [ + deprecated lark networkx numpy @@ -56,6 +60,8 @@ buildPythonPackage rec { retry rpcq scipy + tenacity + types-deprecated types-python-dateutil types-retry ] ++ lib.optionals (pythonOlder "3.8") [ diff --git a/pkgs/development/python-modules/pyramid_jinja2/default.nix b/pkgs/development/python-modules/pyramid-jinja2/default.nix index 6ec35620cd652..d83b28e0a4f76 100644 --- a/pkgs/development/python-modules/pyramid_jinja2/default.nix +++ b/pkgs/development/python-modules/pyramid-jinja2/default.nix @@ -1,5 +1,4 @@ -{ stdenv -, lib +{ lib , buildPythonPackage , fetchPypi , webtest @@ -53,7 +52,6 @@ buildPythonPackage rec { ]; meta = with lib; { - broken = (stdenv.isLinux && stdenv.isAarch64) || stdenv.isDarwin; description = "Jinja2 template bindings for the Pyramid web framework"; homepage = "https://github.com/Pylons/pyramid_jinja2"; license = licenses.bsd0; diff --git a/pkgs/development/python-modules/pyroute2/default.nix b/pkgs/development/python-modules/pyroute2/default.nix index 015b4d6fbdab2..48ad5bb08e94d 100644 --- a/pkgs/development/python-modules/pyroute2/default.nix +++ b/pkgs/development/python-modules/pyroute2/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "pyroute2"; - version = "0.7.8"; + version = "0.7.9"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-mJRHQ08XyyD9kvwfFV8LxqRoKr9hH94qeslaYed3f/0="; + hash = "sha256-tp2C8UCwd0MX17pA9sX6HXVQmLo/PrYZmC0W51DcYxo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pyschlage/default.nix b/pkgs/development/python-modules/pyschlage/default.nix new file mode 100644 index 0000000000000..89ab63b1b6cd4 --- /dev/null +++ b/pkgs/development/python-modules/pyschlage/default.nix @@ -0,0 +1,53 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pycognito +, pytestCheckHook +, pythonOlder +, requests +, setuptools +, setuptools-scm +}: + +buildPythonPackage rec { + pname = "pyschlage"; + version = "2023.5.0"; + format = "pyproject"; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "dknowles2"; + repo = "pyschlage"; + rev = "refs/tags/${version}"; + hash = "sha256-l9Xi1VffvobSjluParvQjCTsCMWvhSV975j1OVclBWw="; + }; + + SETUPTOOLS_SCM_PRETEND_VERSION = version; + + nativeBuildInputs = [ + setuptools + setuptools-scm + ]; + + propagatedBuildInputs = [ + pycognito + requests + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "pyschlage" + ]; + + meta = with lib; { + description = "Library for interacting with Schlage Encode WiFi locks"; + homepage = "https://github.com/dknowles2/pyschlage"; + changelog = "https://github.com/dknowles2/pyschlage/releases/tag/${version}"; + license = licenses.asl20; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/pysmart/default.nix b/pkgs/development/python-modules/pysmart/default.nix index f0ec07437bca1..fc21919a63ab6 100644 --- a/pkgs/development/python-modules/pysmart/default.nix +++ b/pkgs/development/python-modules/pysmart/default.nix @@ -1,35 +1,44 @@ { lib , buildPythonPackage , fetchFromGitHub -, smartmontools +, chardet , humanfriendly , pytestCheckHook , pythonOlder +, setuptools-scm +, smartmontools }: buildPythonPackage rec { pname = "pysmart"; - version = "1.2.3"; - format = "setuptools"; + version = "1.2.5"; + format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "truenas"; repo = "py-SMART"; - rev = "refs/tags/v${version}"; - hash = "sha256-5VoZEgHWmHUDkm2KhBP0gfmhOJUYJUqDLWBp/kU1404="; + rev = "v${version}"; + hash = "sha256-NqE7Twl1kxXrASyxw35xIOTB+LThU0a45NCxh8SUxfI="; }; + SETUPTOOLS_SCM_PRETEND_VERSION = version; + postPatch = '' substituteInPlace pySMART/utils.py \ --replace "which('smartctl')" '"${smartmontools}/bin/smartctl"' ''; propagatedBuildInputs = [ + chardet humanfriendly ]; + nativeBuildInputs = [ + setuptools-scm + ]; + nativeCheckInputs = [ pytestCheckHook ]; diff --git a/pkgs/development/python-modules/pysnooz/default.nix b/pkgs/development/python-modules/pysnooz/default.nix index e5f120b4d6f00..24868e7a6b623 100644 --- a/pkgs/development/python-modules/pysnooz/default.nix +++ b/pkgs/development/python-modules/pysnooz/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "pysnooz"; - version = "0.8.4"; + version = "0.8.5"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "AustinBrunkhorst"; repo = pname; rev = "v${version}"; - hash = "sha256-PrjDGBmdYN5qWUh5fvtq1yOMa/Lobq181C2RNfwfARI="; + hash = "sha256-X7RjI4KytJI9raHAJHLygV3J4zHKuHk8Kq+3JfktPeg="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pytest-grpc/default.nix b/pkgs/development/python-modules/pytest-grpc/default.nix new file mode 100644 index 0000000000000..da106064a8042 --- /dev/null +++ b/pkgs/development/python-modules/pytest-grpc/default.nix @@ -0,0 +1,32 @@ +{ lib +, buildPythonPackage +, fetchPypi +, grpcio +, pytest +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "pytest-grpc"; + version = "0.8.0"; + + src = fetchPypi { + inherit pname version; + hash = "sha256-C9JoP/00GZRE1wfAqwGXCyLgr7umyx3bbVeMhev+Cb0="; + }; + + buildInputs = [ + pytest + ]; + + propagatedBuildInputs = [ + grpcio + ]; + + meta = with lib; { + description = "pytest plugin for grpc"; + homepage = "https://github.com/MobileDynasty/pytest-env"; + license = licenses.mit; + maintainers = teams.deshaw.members; + }; +} diff --git a/pkgs/development/python-modules/pytest-relaxed/default.nix b/pkgs/development/python-modules/pytest-relaxed/default.nix index b07d603c1e8e2..7962198ca8d52 100644 --- a/pkgs/development/python-modules/pytest-relaxed/default.nix +++ b/pkgs/development/python-modules/pytest-relaxed/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "pytest-relaxed"; - version = "2.0.0"; + version = "2.0.1"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-Szc8x1Rmb/YPVCWmnLQUZCwqEc56RsjOBmpzjkCSyjk="; + hash = "sha256-U6c3Lj/qpSdAm7QDU/gTxZt2Dl2L1H5vb88YfF2W3Qw="; }; buildInputs = [ diff --git a/pkgs/development/python-modules/pytest-testmon/default.nix b/pkgs/development/python-modules/pytest-testmon/default.nix index 3b8f61e2452c0..584cc75e5cd8d 100644 --- a/pkgs/development/python-modules/pytest-testmon/default.nix +++ b/pkgs/development/python-modules/pytest-testmon/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "pytest-testmon"; - version = "2.0.6"; + version = "2.0.8"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "tarpas"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-hyWt5Dk8CK9b8DhcZGHFnHGAgIefvIoM3AjogZPY+i0="; + hash = "sha256-UMWcLNKPMlfPl2plSViRcKkgqYs23b3KdzexLHXq/+g="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/python-benedict/default.nix b/pkgs/development/python-modules/python-benedict/default.nix index cbac12927c1cb..561e89cd1ae51 100644 --- a/pkgs/development/python-modules/python-benedict/default.nix +++ b/pkgs/development/python-modules/python-benedict/default.nix @@ -24,7 +24,7 @@ buildPythonPackage rec { pname = "python-benedict"; - version = "0.30.1"; + version = "0.30.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -33,7 +33,7 @@ buildPythonPackage rec { owner = "fabiocaccamo"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-7X8a9033r6MJT1KgPH7FiXL0EZqwi4wnKVw5AYAaVR8="; + hash = "sha256-MT1oZqzYFK37z6YpRZ9LBg0ynCaq2UrrQzlDDb3YIvo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/python-daemon/default.nix b/pkgs/development/python-modules/python-daemon/default.nix index 6b49888143ec3..a0dc1f05b76e5 100644 --- a/pkgs/development/python-modules/python-daemon/default.nix +++ b/pkgs/development/python-modules/python-daemon/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "python-daemon"; - version = "2.3.0"; + version = "3.0.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "bda993f1623b1197699716d68d983bb580043cf2b8a66a01274d9b8297b0aeaf"; + sha256 = "sha256-bFdFI3L36v9Ak0ocA60YJr9eeTVY6H/vSRMeZGS02uU="; }; nativeBuildInputs = [ @@ -39,23 +39,6 @@ buildPythonPackage rec { testtools ]; - patches = [ - # Should be fixed in the next release - (fetchpatch { - url = "https://src.fedoraproject.org/rpms/python-daemon/raw/rawhide/f/python-daemon-safe_hasattr.patch"; - hash = "sha256-p5epAlM/sdel01oZkSI1vahUZYX8r90WCJuvBnfMaus="; - }) - (fetchpatch { - url = "https://src.fedoraproject.org/rpms/python-daemon/raw/rawhide/f/tests-remove-duplicate-mocking.patch"; - hash = "sha256-5b/dFR3Z8xaPw8AZU95apDZd4ZfmMQhAmavWkVaJog8="; - }) - ]; - - disabledTestPaths = [ - # requires removed distutils.command - "test_version.py" - ]; - disabledTests = [ "begin_with_TestCase" "changelog_TestCase" @@ -77,7 +60,6 @@ buildPythonPackage rec { "daemon" "daemon.daemon" "daemon.pidfile" - "daemon.runner" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/python-ecobee-api/default.nix b/pkgs/development/python-modules/python-ecobee-api/default.nix index e287d7490b996..644acb8a4883a 100644 --- a/pkgs/development/python-modules/python-ecobee-api/default.nix +++ b/pkgs/development/python-modules/python-ecobee-api/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "python-ecobee-api"; - version = "0.2.16"; + version = "0.2.17"; src = fetchPypi { inherit pname version; - hash = "sha256-wzL1WylQAFLxWu3lDFqQtLxJbQjse4OX/fbzaaEuvGQ="; + hash = "sha256-lJCbNOQJ8xmMa4V+tSFZx4QasK8ZLfsFavMP9Zge4K4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/python-gvm/default.nix b/pkgs/development/python-modules/python-gvm/default.nix index ed0f2a57cb535..d6f7e29b9dee5 100644 --- a/pkgs/development/python-modules/python-gvm/default.nix +++ b/pkgs/development/python-modules/python-gvm/default.nix @@ -6,13 +6,14 @@ , lxml , paramiko , poetry-core +, pontos , pytestCheckHook , pythonOlder }: buildPythonPackage rec { pname = "python-gvm"; - version = "23.5.0"; + version = "23.5.1"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -21,7 +22,7 @@ buildPythonPackage rec { owner = "greenbone"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-84MTr9aTMB5MUj84bqbSGfX8JLA1KQ8pRE8Nr2RmoJw="; + hash = "sha256-jdfrmFpWOuQgYwV2NrRyRDwAZThWdBFgfLByVIZ5HhQ="; }; nativeBuildInputs = [ @@ -32,6 +33,7 @@ buildPythonPackage rec { defusedxml lxml paramiko + pontos ]; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/python-heatclient/default.nix b/pkgs/development/python-modules/python-heatclient/default.nix index 82967242fdd53..97cacf1b06421 100644 --- a/pkgs/development/python-modules/python-heatclient/default.nix +++ b/pkgs/development/python-modules/python-heatclient/default.nix @@ -22,14 +22,14 @@ buildPythonPackage rec { pname = "python-heatclient"; - version = "3.2.0"; + version = "3.3.0"; format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-LYjRjDeZp7LQeQFXLogyGy4LEgawTQED+5qRu799tWM="; + hash = "sha256-opBb9Zf60kgMtBNis2c+22VGS7psFEDPYvlz7WyKIHs="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/python-lsp-ruff/default.nix b/pkgs/development/python-modules/python-lsp-ruff/default.nix index 328af948a7278..88610f19307e9 100644 --- a/pkgs/development/python-modules/python-lsp-ruff/default.nix +++ b/pkgs/development/python-modules/python-lsp-ruff/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "python-lsp-ruff"; - version = "1.4.0"; + version = "1.5.1"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit version; pname = "python-lsp-ruff"; - sha256 = "sha256-TqTeQc/lT5DcPcJbZXbEiUGbYjFP8idpzdSZlXD59Y4="; + sha256 = "sha256-yvG4Qn9aym0rTDALURxHrWtDhO7g2VYsI+zLgb8z+gE="; }; postPatch = '' diff --git a/pkgs/development/python-modules/python-mapnik/default.nix b/pkgs/development/python-modules/python-mapnik/default.nix index a6e42d2369b65..5eee8f59c39b5 100644 --- a/pkgs/development/python-modules/python-mapnik/default.nix +++ b/pkgs/development/python-modules/python-mapnik/default.nix @@ -133,7 +133,7 @@ buildPythonPackage rec { "test_visual_zoom_all_rendering1" "test_visual_zoom_all_rendering2" "test_wgs84_inverse_forward" - ] ++ lib.optional stdenv.isDarwin [ + ] ++ lib.optionals stdenv.isDarwin [ "test_passing_pycairo_context_pdf" ]; diff --git a/pkgs/development/python-modules/python-matter-server/default.nix b/pkgs/development/python-modules/python-matter-server/default.nix index a20a806a19cf5..1f7722ec42070 100644 --- a/pkgs/development/python-modules/python-matter-server/default.nix +++ b/pkgs/development/python-modules/python-matter-server/default.nix @@ -27,7 +27,7 @@ buildPythonPackage rec { pname = "python-matter-server"; - version = "3.4.1"; + version = "3.4.2"; format = "pyproject"; disabled = pythonOlder "3.10"; @@ -36,7 +36,7 @@ buildPythonPackage rec { owner = "home-assistant-libs"; repo = "python-matter-server"; rev = "refs/tags/${version}"; - hash = "sha256-lNIWtg4+7sXWhg4V2lwMO6jyE0mMh6Fqtwjzri/Tfh8="; + hash = "sha256-C46GrCoilOYVZvuvYIOwyJM16tpJtm8cknqdAzhew7I="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/python-nomad/default.nix b/pkgs/development/python-modules/python-nomad/default.nix index e7e191c7280be..3a7750e9deac7 100644 --- a/pkgs/development/python-modules/python-nomad/default.nix +++ b/pkgs/development/python-modules/python-nomad/default.nix @@ -1,24 +1,37 @@ -{ lib, buildPythonPackage, fetchPypi, requests }: +{ lib +, buildPythonPackage +, fetchPypi +, requests +, pythonOlder +}: buildPythonPackage rec { pname = "python-nomad"; - version = "1.5.0"; + version = "2.0.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-VpngJvm9eK60lPeFIbjnTwzWWoJ9tRBDYP5SghDMbAg="; + hash = "sha256-5IyHNw1ArE8fU9DoSQMGkDI9d/OiR1YI/7nTPeFIK+A="; }; - propagatedBuildInputs = [ requests ]; + propagatedBuildInputs = [ + requests + ]; # Tests require nomad agent doCheck = false; - pythonImportsCheck = [ "nomad" ]; + pythonImportsCheck = [ + "nomad" + ]; meta = with lib; { description = "Python client library for Hashicorp Nomad"; homepage = "https://github.com/jrxFive/python-nomad"; + changelog = "https://github.com/jrxFive/python-nomad/blob/${version}/CHANGELOG.md"; license = licenses.mit; maintainers = with maintainers; [ xbreak ]; }; diff --git a/pkgs/development/python-modules/python-roborock/default.nix b/pkgs/development/python-modules/python-roborock/default.nix index 4979327c7fd4c..637a5e589855d 100644 --- a/pkgs/development/python-modules/python-roborock/default.nix +++ b/pkgs/development/python-modules/python-roborock/default.nix @@ -1,4 +1,5 @@ { lib +, stdenv , aiohttp , async-timeout , buildPythonPackage @@ -9,6 +10,7 @@ , paho-mqtt , poetry-core , pycryptodome +, pycryptodomex , pytest-asyncio , pytestCheckHook , pythonOlder @@ -16,7 +18,7 @@ buildPythonPackage rec { pname = "python-roborock"; - version = "0.18.6"; + version = "0.23.4"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -25,7 +27,7 @@ buildPythonPackage rec { owner = "humbertogontijo"; repo = "python-roborock"; rev = "refs/tags/v${version}"; - hash = "sha256-7fJfN5pOHmxjjivFNhfp6ZK8jTBbuJARfEZkzrnsg4w="; + hash = "sha256-8rcttFo1kkx0JfySjcKchlPc0RjutF6MuA/DVSpclKo="; }; nativeBuildInputs = [ @@ -40,6 +42,8 @@ buildPythonPackage rec { dacite paho-mqtt pycryptodome + ] ++ lib.optionals stdenv.isDarwin [ + pycryptodomex ]; nativeCheckInputs = [ diff --git a/pkgs/development/python-modules/python_docs_theme/default.nix b/pkgs/development/python-modules/python_docs_theme/default.nix new file mode 100644 index 0000000000000..4e7f9ff848843 --- /dev/null +++ b/pkgs/development/python-modules/python_docs_theme/default.nix @@ -0,0 +1,25 @@ +{ lib, buildPythonPackage, fetchFromGitHub, sphinx }: + +buildPythonPackage rec { + pname = "python_docs_theme"; + version = "2023.3.1"; + format = "flit"; + + src = fetchFromGitHub { + owner = "python"; + repo = "python-docs-theme"; + rev = version; + sha256 = "sha256-WyO5Xc67k5ExB4eCFd17sZCBMaV5djle9BAM0tn5CPc="; + }; + + propagatedBuildInputs = [ sphinx ]; + + pythonImportsCheck = [ "python_docs_theme" ]; + + meta = with lib; { + homepage = "https://github.com/python/python-docs-theme"; + description = "Sphinx theme for CPython project"; + license = licenses.psfl; + maintainers = with maintainers; [ kaction ]; + }; +} diff --git a/pkgs/development/python-modules/pyunifiprotect/default.nix b/pkgs/development/python-modules/pyunifiprotect/default.nix index 92a8690d27868..a7c6c9b78aaff 100644 --- a/pkgs/development/python-modules/pyunifiprotect/default.nix +++ b/pkgs/development/python-modules/pyunifiprotect/default.nix @@ -31,7 +31,7 @@ buildPythonPackage rec { pname = "pyunifiprotect"; - version = "4.9.0"; + version = "4.10.1"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -40,7 +40,7 @@ buildPythonPackage rec { owner = "briis"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-fIkZh/fkeVzQyEa4goGnaCxOWsKLKRlw+0/nGBDmKlY="; + hash = "sha256-DJxfr4pQna+up5XYi4zs66oTuHzLVz0bEuql6mW2e70="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pyvex/default.nix b/pkgs/development/python-modules/pyvex/default.nix index f4acd846c3a72..d9efdd0275d04 100644 --- a/pkgs/development/python-modules/pyvex/default.nix +++ b/pkgs/development/python-modules/pyvex/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "pyvex"; - version = "9.2.52"; + version = "9.2.54"; format = "pyproject"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-6cC+dr0ViHOSwgf9ubpTNIJbGFIYxWmxkPXFAKvQh0I="; + hash = "sha256-0X2K3glUWIJjiThvsTwIPUA3TVf9ret74B3BcAcr9bE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pyvisa-sim/default.nix b/pkgs/development/python-modules/pyvisa-sim/default.nix new file mode 100644 index 0000000000000..56fef67a1f9fb --- /dev/null +++ b/pkgs/development/python-modules/pyvisa-sim/default.nix @@ -0,0 +1,49 @@ +{ lib +, fetchPypi +, pythonOlder +, buildPythonPackage +, pyvisa +, pyyaml +, stringparser +, typing-extensions +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "pyvisa-sim"; + version = "0.5.1"; + format = "pyproject"; + + disabled = pythonOlder "3.8"; + + src = fetchPypi { + pname = "PyVISA-sim"; + inherit version; + sha256 = "sha256-vWxW941/1e58pqL/Rzq+eoZJpwsvLphgIe48SuJtohY="; + }; + + propagatedBuildInputs = [ + pyvisa + pyyaml + stringparser + typing-extensions + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ "pyvisa_sim" ]; + + # should be fixed after 0.5.1, remove at next release + disabledTestPaths = [ + "pyvisa_sim/testsuite/test_all.py" + ]; + + meta = with lib; { + description = "Simulated backend for PyVISA implementing TCPIP, GPIB, RS232, and USB resources"; + homepage = "https://pyvisa.readthedocs.io/projects/pyvisa-sim/en/latest/"; + license = licenses.mit; + maintainers = with maintainers; [ evilmav ]; + }; +} diff --git a/pkgs/development/python-modules/pywebview/default.nix b/pkgs/development/python-modules/pywebview/default.nix index 913b116c29ec7..84e2a3f644423 100644 --- a/pkgs/development/python-modules/pywebview/default.nix +++ b/pkgs/development/python-modules/pywebview/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "pywebview"; - version = "4.0.2"; + version = "4.1"; format = "setuptools"; disabled = pythonOlder "3.5"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "r0x0r"; repo = "pywebview"; rev = "refs/tags/${version}"; - hash = "sha256-awgX862p1jU/LWdg7QMC9by0OJMkzGwnC0yrc93I/c0="; + hash = "sha256-oqyWT0GaZ201OMVRcRpm1dma6NonTMmTx5SKnjzQl3M="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pywerview/default.nix b/pkgs/development/python-modules/pywerview/default.nix index 43543279efc2a..2bbb0b2357264 100644 --- a/pkgs/development/python-modules/pywerview/default.nix +++ b/pkgs/development/python-modules/pywerview/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "pywerview"; - version = "0.4.1"; + version = "0.5.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "the-useless-one"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-5/Cn70qQaUp38qko1Wq+gZMCcQtcAPtZwt7Zrx8MFc4="; + hash = "sha256-+fSYDaN0nsffL1icx2nAIJydzwT+JB6qF9u+5b3RPK8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyzipper/default.nix b/pkgs/development/python-modules/pyzipper/default.nix new file mode 100644 index 0000000000000..d12e396e2db16 --- /dev/null +++ b/pkgs/development/python-modules/pyzipper/default.nix @@ -0,0 +1,55 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pythonOlder +, pytestCheckHook +, pycryptodomex +}: + +buildPythonPackage rec { + pname = "pyzipper"; + version = "0.3.6"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "danifus"; + repo = "pyzipper"; + rev = "refs/tags/v${version}"; + hash = "sha256-+fZXoAUeB/bUI3LrIFlMTktJgn+GNFBiDHvH2Jgo0pg="; + }; + + propagatedBuildInputs = [ + pycryptodomex + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "pyzipper" + ]; + + disabledTests = [ + # Tests are parsing CLI output + "test_args_from_interpreter_flags" + "test_bad_use" + "test_bad_use" + "test_check__all__" + "test_create_command" + "test_extract_command" + "test_main" + "test_temp_dir__forked_child" + "test_test_command" + ]; + + meta = with lib; { + description = "Python zipfile extensions"; + homepage = "https://github.com/danifus/pyzipper"; + changelog = "https://github.com/danifus/pyzipper/blob/v${version}/HISTORY.rst"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/qcodes-contrib-drivers/default.nix b/pkgs/development/python-modules/qcodes-contrib-drivers/default.nix new file mode 100644 index 0000000000000..e26745e77566e --- /dev/null +++ b/pkgs/development/python-modules/qcodes-contrib-drivers/default.nix @@ -0,0 +1,58 @@ +{ lib +, fetchFromGitHub +, pythonOlder +, buildPythonPackage +, setuptools +, versioningit +, qcodes +, packaging +, pytestCheckHook +, pytest-mock +, pyvisa-sim +}: + +buildPythonPackage rec { + pname = "qcodes-contrib-drivers"; + version = "0.18.0"; + + disabled = pythonOlder "3.8"; + format = "pyproject"; + + src = fetchFromGitHub { + owner = "QCoDeS"; + repo = "Qcodes_contrib_drivers"; + rev = "v${version}"; + sha256 = "sha256-hg3jSiuOkiuOInnUzzlKtBeoP5zkCDBQ3xP6KCwq+lU="; + }; + + nativeBuildInputs = [ setuptools versioningit ]; + + propagatedBuildInputs = [ + qcodes + packaging + ]; + + nativeCheckInputs = [ + pytestCheckHook + pytest-mock + pyvisa-sim + ]; + + pythonImportsCheck = [ "qcodes_contrib_drivers" ]; + + # should be fixed starting with 0.19.0, remove at next release + disabledTestPaths = [ + "qcodes_contrib_drivers/tests/test_Keysight_M3201A.py" + ]; + + postInstall = '' + export HOME="$TMPDIR" + ''; + + meta = with lib; { + description = "User contributed drivers for QCoDeS"; + homepage = "https://github.com/QCoDeS/Qcodes_contrib_drivers"; + license = licenses.mit; + maintainers = with maintainers; [ evilmav ]; + }; +} diff --git a/pkgs/development/python-modules/qcodes-loop/default.nix b/pkgs/development/python-modules/qcodes-loop/default.nix new file mode 100644 index 0000000000000..ef65af007d909 --- /dev/null +++ b/pkgs/development/python-modules/qcodes-loop/default.nix @@ -0,0 +1,87 @@ +{ lib +, fetchPypi +, pythonOlder +, buildPythonPackage +, qcodes +, h5py +, lazy-loader +, matplotlib +, numpy +, pandas +, versioningit +, xarray +, hickle +, ipython +, slack-sdk +, hypothesis +, pytest-xdist +, pytest-mock +, pyqtgraph +, pyqt5 +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "qcodes-loop"; + version = "0.1.1"; + + disabled = pythonOlder "3.8"; + format = "pyproject"; + + src = fetchPypi { + inherit version; + pname = "qcodes_loop"; + sha256 = "sha256-pDR0Ws8cYQifftdE9dKcSzMxmouFo4tJmQvNanm6zyM="; + }; + + nativeBuildInputs = [ + versioningit + ]; + + propagatedBuildInputs = [ + qcodes + h5py + lazy-loader + matplotlib + numpy + pandas + xarray + hickle + ipython + ]; + + passthru.optional-dependencies = { + qtplot = [ + pyqtgraph + ]; + slack = [ + slack-sdk + ]; + }; + + nativeCheckInputs = [ + pytestCheckHook + hypothesis + pytest-xdist + pytest-mock + pyqt5 + ]; + + pythonImportsCheck = [ "qcodes_loop" ]; + + disabledTestPaths = [ + # test broken in 0.1.1, see https://github.com/QCoDeS/Qcodes_loop/pull/25 + "src/qcodes_loop/tests/test_hdf5formatter.py" + ]; + + postInstall = '' + export HOME="$TMPDIR" + ''; + + meta = with lib; { + description = "Features previously in QCoDeS"; + homepage = "https://github.com/QCoDeS/Qcodes_loop"; + license = licenses.mit; + maintainers = with maintainers; [ evilmav ]; + }; +} diff --git a/pkgs/development/python-modules/qcodes/default.nix b/pkgs/development/python-modules/qcodes/default.nix new file mode 100644 index 0000000000000..46e39fc4fcf81 --- /dev/null +++ b/pkgs/development/python-modules/qcodes/default.nix @@ -0,0 +1,133 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder +, setuptools +, versioningit + + # mandatory +, broadbean +, h5netcdf +, h5py +, importlib-metadata +, importlib-resources +, ipywidgets +, ipykernel +, jsonschema +, matplotlib +, numpy +, opencensus +, opencensus-ext-azure +, packaging +, pandas +, pyvisa +, ruamel-yaml +, tabulate +, typing-extensions +, tqdm +, uncertainties +, websockets +, wrapt +, xarray +, ipython +, pillow +, rsa + + # optional +, qcodes-loop + + # test +, pytestCheckHook +, deepdiff +, hypothesis +, lxml +, pytest-asyncio +, pytest-mock +, pytest-rerunfailures +, pytest-xdist +, pyvisa-sim +, sphinx +}: + +buildPythonPackage rec { + pname = "qcodes"; + version = "0.38.1"; + + disabled = pythonOlder "3.8"; + format = "pyproject"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-whUGkRvYQOdYxWoj7qhv2kiiyTwq3ZLLipI424PBzFg="; + }; + + nativeBuildInputs = [ setuptools versioningit ]; + + propagatedBuildInputs = [ + broadbean + h5netcdf + h5py + ipywidgets + ipykernel + jsonschema + matplotlib + numpy + opencensus + opencensus-ext-azure + packaging + pandas + pyvisa + ruamel-yaml + tabulate + typing-extensions + tqdm + uncertainties + websockets + wrapt + xarray + ipython + pillow + rsa + ] ++ lib.optionals (pythonOlder "3.10") [ + importlib-metadata + ] ++ lib.optionals (pythonOlder "3.9") [ + importlib-resources + ]; + + passthru.optional-dependencies = { + loop = [ + qcodes-loop + ]; + }; + + nativeCheckInputs = [ + pytestCheckHook + deepdiff + hypothesis + lxml + pytest-asyncio + pytest-mock + pytest-rerunfailures + pytest-xdist + pyvisa-sim + sphinx + ]; + + disabledTestPaths = [ + # depends on qcodes-loop, causing a cyclic dependency + "qcodes/tests/dataset/measurement/test_load_legacy_data.py" + ]; + + pythonImportsCheck = [ "qcodes" ]; + + postInstall = '' + export HOME="$TMPDIR" + ''; + + meta = { + homepage = "https://qcodes.github.io/Qcodes/"; + description = "Python-based data acquisition framework"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ evilmav ]; + }; +} diff --git a/pkgs/development/python-modules/rasterio/default.nix b/pkgs/development/python-modules/rasterio/default.nix index 2014f261f4174..7f6abe0872551 100644 --- a/pkgs/development/python-modules/rasterio/default.nix +++ b/pkgs/development/python-modules/rasterio/default.nix @@ -68,6 +68,7 @@ buildPythonPackage rec { }; nativeCheckInputs = [ + boto3 hypothesis packaging pytest-randomly @@ -75,6 +76,12 @@ buildPythonPackage rec { shapely ]; + doCheck = true; + + preCheck = '' + rm -r rasterio # prevent importing local rasterio + ''; + pytestFlagsArray = [ "-m 'not network'" ]; @@ -87,15 +94,6 @@ buildPythonPackage rec { "rasterio" ]; - doInstallCheck = true; - - installCheckPhase = '' - $out/bin/rio --show-versions | grep -E "rasterio:\s${version}" > /dev/null - $out/bin/rio --show-versions | grep -E "GDAL:\s[0-9]+(\.[0-9]+)*" > /dev/null - $out/bin/rio --show-versions | grep -E "PROJ:\s[0-9]+(\.[0-9]+)*" > /dev/null - $out/bin/rio --show-versions | grep -E "GEOS:\s[0-9]+(\.[0-9]+)*" > /dev/null - ''; - meta = with lib; { description = "Python package to read and write geospatial raster data"; homepage = "https://rasterio.readthedocs.io/"; diff --git a/pkgs/development/python-modules/reqif/default.nix b/pkgs/development/python-modules/reqif/default.nix index 12357587b9081..e0ba5610ebd5f 100644 --- a/pkgs/development/python-modules/reqif/default.nix +++ b/pkgs/development/python-modules/reqif/default.nix @@ -7,18 +7,21 @@ , lxml , jinja2 , pytestCheckHook +, pythonOlder }: buildPythonPackage rec { pname = "reqif"; - version = "0.0.27"; + version = "0.0.35"; format = "pyproject"; + disabled = pythonOlder "3.7"; + src = fetchFromGitHub { owner = "strictdoc-project"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-K+su1fhXf/fzL+AI/me2imCNI9aWMcv9Qo1dDRNypso="; + hash = "sha256-3yOLOflPqzJRv3qCQXFK3rIFftBq8FkYy7XhOfWH82Y="; }; postPatch = '' @@ -49,6 +52,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python library for ReqIF format"; homepage = "https://github.com/strictdoc-project/reqif"; + changelog = "https://github.com/strictdoc-project/reqif/releases/tag/${version}"; license = licenses.asl20; maintainers = with maintainers; [ yuu ]; }; diff --git a/pkgs/development/python-modules/requests/default.nix b/pkgs/development/python-modules/requests/default.nix index 23506a63f1ae0..44733b2da0afe 100644 --- a/pkgs/development/python-modules/requests/default.nix +++ b/pkgs/development/python-modules/requests/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "requests"; - version = "2.29.0"; + version = "2.31.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - hash = "sha256-8uNKdfR0kBm7Dj7/tmaDYw5P/q91gZ+1G+vvG/Wu8Fk="; + hash = "sha256-lCxadY+Y15Dq7Ropy27vx/+w0c968Fw9J5Flbb1q0eE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/rich-argparse/default.nix b/pkgs/development/python-modules/rich-argparse/default.nix new file mode 100644 index 0000000000000..5578acbe5b69f --- /dev/null +++ b/pkgs/development/python-modules/rich-argparse/default.nix @@ -0,0 +1,41 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, hatchling +, rich +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "rich-argparse"; + version = "1.1.0"; + format = "pyproject"; + + src = fetchFromGitHub { + owner = "hamdanal"; + repo = "rich-argparse"; + rev = "v${version}"; + hash = "sha256-Rnv4A9pZ5VHpNjrWnsKyxQ4ISCLjIUu3tbbOzP4uFuw="; + }; + + propagatedBuildInputs = [ + hatchling + rich + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "rich_argparse" + ]; + + meta = with lib; { + description = "Format argparse help output using rich."; + homepage = "https://github.com/hamdanal/rich-argparse"; + changelog = "https://github.com/hamdanal/rich-argparse/blob/v${version}/CHANGELOG.md"; + license = licenses.mit; + maintainers = with maintainers; [ graham33 ]; + }; +} diff --git a/pkgs/development/python-modules/rich-pixels/default.nix b/pkgs/development/python-modules/rich-pixels/default.nix new file mode 100644 index 0000000000000..2c9249b886b3b --- /dev/null +++ b/pkgs/development/python-modules/rich-pixels/default.nix @@ -0,0 +1,51 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, poetry-core +, pytestCheckHook +, syrupy +, pillow +, rich +}: + +buildPythonPackage rec { + pname = "rich-pixels"; + version = "2.1.1"; + format = "pyproject"; + + src = fetchFromGitHub { + owner = "darrenburns"; + repo = "rich-pixels"; + rev = version; + hash = "sha256-zI6jtEdmBAEGxyASo/6fiHdzwzoSwXN7A5x1CmYS5qc="; + }; + + nativeBuildInputs = [ + poetry-core + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + checkInputs = [ + syrupy + ]; + + propagatedBuildInputs = [ + pillow + rich + ]; + + pythonImportsCheck = [ "rich_pixels" ]; + + meta = with lib; { + description = "A Rich-compatible library for writing pixel images and ASCII art to the terminal"; + homepage = "https://github.com/darrenburns/rich-pixels"; + changelog = "https://github.com/darrenburns/rich-pixels/releases/tag/${src.rev}"; + # upstream has no license specified + # https://github.com/darrenburns/rich-pixels/issues/11 + license = licenses.unfree; + maintainers = with maintainers; [ figsoda ]; + }; +} diff --git a/pkgs/development/python-modules/rns/default.nix b/pkgs/development/python-modules/rns/default.nix index b937058f40c33..8295ca7dd54be 100644 --- a/pkgs/development/python-modules/rns/default.nix +++ b/pkgs/development/python-modules/rns/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "rns"; - version = "0.5.3"; + version = "0.5.4"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "markqvist"; repo = "Reticulum"; rev = "refs/tags/${version}"; - hash = "sha256-SZx0GBpYDC7p7yLVY5WZmBgpbpcl9GbsfdqH0YBrUgQ="; + hash = "sha256-OFU61RX6XtC/7x3SWbRCsODTrs3k3FCTCvEapkkeWQU="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/rq/default.nix b/pkgs/development/python-modules/rq/default.nix index b07c764ff354c..4ec3b676698af 100644 --- a/pkgs/development/python-modules/rq/default.nix +++ b/pkgs/development/python-modules/rq/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "rq"; - version = "1.14.1"; + version = "1.15"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "rq"; repo = "rq"; rev = "refs/tags/v${version}"; - hash = "sha256-8X7l59YAO4T0JA3saLzEwirHZniXsp/9Z8q+Tr2HDv0="; + hash = "sha256-QTQ90ZJQU6UWPjNCjmR4ez6av+B9M8gDof2Gq+R86aY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/rtslib/default.nix b/pkgs/development/python-modules/rtslib/default.nix index 4814b863c2a8f..808dca3d44f9a 100644 --- a/pkgs/development/python-modules/rtslib/default.nix +++ b/pkgs/development/python-modules/rtslib/default.nix @@ -1,24 +1,16 @@ -{ lib, fetchFromGitHub, fetchpatch, buildPythonPackage, six, pyudev, pygobject3 }: +{ lib, fetchFromGitHub, buildPythonPackage, six, pyudev, pygobject3 }: buildPythonPackage rec { pname = "rtslib"; - version = "2.1.75"; + version = "2.1.76"; src = fetchFromGitHub { owner = "open-iscsi"; repo = "${pname}-fb"; rev = "refs/tags/v${version}"; - hash = "sha256-qBlr4K+LeJIC6Hwy6dN9n/VjHIUYCy8pLlRtPvooWyE="; + hash = "sha256-z9fpSVyv96ZoJaP0ch2A3bX/o/K23ooEpxa/OAhY6Z4="; }; - patches = [ - # <https://github.com/open-iscsi/rtslib-fb/pull/187> - (fetchpatch { - url = "https://github.com/zhaofengli/rtslib-fb/commit/1c3c8257940a88e65676f4333363ddf259a06723.patch"; - hash = "sha256-nDzL8pUKwKIej+6rOg7Om5AkwkClKk6qKlImbpoufz4="; - }) - ]; - propagatedBuildInputs = [ six pyudev pygobject3 ]; meta = with lib; { diff --git a/pkgs/development/python-modules/rzpipe/default.nix b/pkgs/development/python-modules/rzpipe/default.nix index 4000aaa267537..b2f31e85f54ac 100644 --- a/pkgs/development/python-modules/rzpipe/default.nix +++ b/pkgs/development/python-modules/rzpipe/default.nix @@ -6,13 +6,13 @@ buildPythonPackage rec { pname = "rzpipe"; - version = "0.5.0"; + version = "0.5.1"; disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; - hash = "sha256-kEJg619HyX7loEBUsjpVtgF5dBzJtmM9/bQnUkDUjHU="; + hash = "sha256-0xbkdgMDiBwSzXmlVmRwHlLBgVmfZgmM8lQ4ALgmaBk="; }; # No native rz_core library diff --git a/pkgs/development/python-modules/sdkmanager/default.nix b/pkgs/development/python-modules/sdkmanager/default.nix new file mode 100644 index 0000000000000..0a2092c3d24ca --- /dev/null +++ b/pkgs/development/python-modules/sdkmanager/default.nix @@ -0,0 +1,45 @@ +{ lib +, buildPythonPackage +, fetchFromGitLab +, pythonOlder +, argcomplete +, requests +, gnupg +}: + +buildPythonPackage rec { + pname = "sdkmanager"; + version = "0.6.5"; + format = "setuptools"; + + disabled = pythonOlder "3.5"; + + src = fetchFromGitLab { + owner = "fdroid"; + repo = pname; + rev = version; + hash = "sha256-EQ24OjQZr42C1PFtIXr4yFzYb/M4Tatqu8Zo+9dgtEE="; + }; + + propagatedBuildInputs = [ + argcomplete + requests + ]; + + postInstall = '' + wrapProgram $out/bin/sdkmanager \ + --suffix PATH : ${lib.makeBinPath [ gnupg ]} + ''; + + # has no tests + doCheck = false; + + pythonImportsCheck = [ "sdkmanager" ]; + + meta = with lib; { + homepage = "https://gitlab.com/fdroid/sdkmanager"; + description = "A drop-in replacement for sdkmanager from the Android SDK written in Python"; + license = licenses.agpl3Plus; + maintainers = with maintainers; [ linsui ]; + }; +} diff --git a/pkgs/development/python-modules/sentry-sdk/default.nix b/pkgs/development/python-modules/sentry-sdk/default.nix index a43716b9edc5c..0010723fcf46f 100644 --- a/pkgs/development/python-modules/sentry-sdk/default.nix +++ b/pkgs/development/python-modules/sentry-sdk/default.nix @@ -40,7 +40,7 @@ buildPythonPackage rec { pname = "sentry-sdk"; - version = "1.21.1"; + version = "1.25.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -49,7 +49,7 @@ buildPythonPackage rec { owner = "getsentry"; repo = "sentry-python"; rev = "refs/tags/${version}"; - hash = "sha256-RKYnDeuLWGavYdxsHs+GBGQCUcrVSR+Bi3RO3MbRxfU="; + hash = "sha256-aY6oZf6S6jioeL10euxo1ijvzE7FcHQoWjadE21ILA4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/sfepy/default.nix b/pkgs/development/python-modules/sfepy/default.nix index 6540ca851c98d..7b981be995575 100644 --- a/pkgs/development/python-modules/sfepy/default.nix +++ b/pkgs/development/python-modules/sfepy/default.nix @@ -21,14 +21,14 @@ buildPythonPackage rec { pname = "sfepy"; - version = "2022.3"; + version = "2023.1"; disabled = pythonOlder "3.8"; src = fetchFromGitHub { owner = "sfepy"; repo = "sfepy"; rev = "release_${version}"; - hash = "sha256-6AhyO6LRG6N62ZAoPCZpRKu4ZBzj9IHkurhKFIPFAJI="; + hash = "sha256-PuU6DL9zftHltpYI9VZQzKGIP8l9UUU8GVChrHtpNM0="; }; propagatedBuildInputs = [ @@ -47,9 +47,6 @@ buildPythonPackage rec { ]; postPatch = '' - # broken tests - rm sfepy/tests/test_meshio.py - # slow tests rm sfepy/tests/test_io.py rm sfepy/tests/test_elasticity_small_strain.py diff --git a/pkgs/development/python-modules/skytemple-files/default.nix b/pkgs/development/python-modules/skytemple-files/default.nix index b850f694dcf80..fb6a49ff62049 100644 --- a/pkgs/development/python-modules/skytemple-files/default.nix +++ b/pkgs/development/python-modules/skytemple-files/default.nix @@ -20,7 +20,7 @@ , graphql-core , gql , armips -# tests + # tests , pytestCheckHook , parameterized , xmldiff @@ -70,7 +70,7 @@ buildPythonPackage rec { }; checkInputs = [ pytestCheckHook parameterized xmldiff ] ++ passthru.optional-dependencies.spritecollab; - pytestFlagsArray = "test/"; + pytestFlagsArray = [ "test/" ]; disabledTestPaths = [ "test/skytemple_files_test/common/spritecollab/sc_online_test.py" "test/skytemple_files_test/compression_container/atupx/atupx_test.py" # Particularly long test diff --git a/pkgs/development/python-modules/snakeviz/default.nix b/pkgs/development/python-modules/snakeviz/default.nix index 05b019c1cd2f5..0b37679449853 100644 --- a/pkgs/development/python-modules/snakeviz/default.nix +++ b/pkgs/development/python-modules/snakeviz/default.nix @@ -1,21 +1,54 @@ -{ lib, fetchPypi, buildPythonPackage, tornado }: +{ lib +, buildPythonPackage +, fetchFromGitHub +, ipython +, pytestCheckHook +, pythonOlder +, requests +, setuptools +, tornado +}: buildPythonPackage rec { pname = "snakeviz"; - version = "2.1.2"; + version = "2.2.0"; + format = "pyproject"; - src = fetchPypi { - inherit pname version; - sha256 = "sha256-K4qRmrtefpKv41EnhguMJ2sqeXvv/OLayGFPmM/4byE="; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "jiffyclub"; + repo = pname; + rev = "refs/tags/v${version}"; + hash = "sha256-tW1zUfCgOGQ8TjrKo2lBzGb0MSe25dP0/P9Q6x3736E="; }; - # Upstream doesn't run tests from setup.py - doCheck = false; - propagatedBuildInputs = [ tornado ]; + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + tornado + ]; + + nativeCheckInputs = [ + ipython + pytestCheckHook + requests + ]; + + pythonImportsCheck = [ + "snakeviz" + ]; + + preCheck = '' + export PATH="$PATH:$out/bin"; + ''; meta = with lib; { description = "Browser based viewer for profiling data"; homepage = "https://jiffyclub.github.io/snakeviz"; + changelog = "https://github.com/jiffyclub/snakeviz/blob/v${version}/CHANGES.rst"; license = licenses.bsd3; maintainers = with maintainers; [ nixy ]; }; diff --git a/pkgs/development/python-modules/spacy-transformers/default.nix b/pkgs/development/python-modules/spacy-transformers/default.nix index 7d3057e54ef34..5dabab1ed2678 100644 --- a/pkgs/development/python-modules/spacy-transformers/default.nix +++ b/pkgs/development/python-modules/spacy-transformers/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "spacy-transformers"; - version = "1.2.3"; + version = "1.2.4"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-oNdH0oZNo8XWx+bbzwZs7iXD0Af6zx1k6wBYksgtp4w="; + hash = "sha256-hZwgk/rZ/0EAW8VcABjUKQvdYkVPdr3bzzGKroXzB7U="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/spsdk/default.nix b/pkgs/development/python-modules/spsdk/default.nix index 11e66cc257938..2177ebc97220e 100644 --- a/pkgs/development/python-modules/spsdk/default.nix +++ b/pkgs/development/python-modules/spsdk/default.nix @@ -34,13 +34,13 @@ buildPythonPackage rec { pname = "spsdk"; - version = "1.10.0"; + version = "1.10.1"; src = fetchFromGitHub { owner = "NXPmicro"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-KJUtAWENS3+VAs3Iai1aKYzMYtfetMeI0MHeQ6NraNY="; + hash = "sha256-2UTgVHqFJqizJ6mDT7+PFec3bQexcBG6v8X0E5Ai4Hc="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/sqlalchemy/default.nix b/pkgs/development/python-modules/sqlalchemy/default.nix index a8bd111f26df6..a65eec40d9ef2 100644 --- a/pkgs/development/python-modules/sqlalchemy/default.nix +++ b/pkgs/development/python-modules/sqlalchemy/default.nix @@ -41,7 +41,7 @@ buildPythonPackage rec { pname = "SQLAlchemy"; - version = "2.0.13"; + version = "2.0.15"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -50,7 +50,7 @@ buildPythonPackage rec { owner = "sqlalchemy"; repo = "sqlalchemy"; rev = "refs/tags/rel_${lib.replaceStrings [ "." ] [ "_" ] version}"; - hash = "sha256-tKxzKv0Ng0saybeFJNleCN5D8gOFw4z9m858OeddJH0="; + hash = "sha256-05GhFearTA9At8MgmEfeXfbS3MAZ0Rmx8jER18q7fmI="; }; nativeBuildInputs =[ diff --git a/pkgs/development/python-modules/sqltrie/default.nix b/pkgs/development/python-modules/sqltrie/default.nix index 1181643f36996..079b81c66aeaf 100644 --- a/pkgs/development/python-modules/sqltrie/default.nix +++ b/pkgs/development/python-modules/sqltrie/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "sqltrie"; - version = "0.3.1"; + version = "0.4.0"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "iterative"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-e/3Tq2H9I0zvqq0+q1c3nbz2UiMNX7JpVpVC9suvYRM="; + hash = "sha256-GNTp7ryll3V0nmaLIfr3E8krRLcLwFviZfLI0LK1Na0="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/stringparser/default.nix b/pkgs/development/python-modules/stringparser/default.nix new file mode 100644 index 0000000000000..bac3159507818 --- /dev/null +++ b/pkgs/development/python-modules/stringparser/default.nix @@ -0,0 +1,36 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, setuptools +, setuptools-scm +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "stringparser"; + version = "0.6"; + format = "setuptools"; + + disabled = pythonOlder "3.5"; + + src = fetchFromGitHub { + owner = "hgrecco"; + repo = pname; + rev = version; + sha256 = "sha256-uyeHuH0UfpZqh7sMRI6+fR/Rr2jSzdR+5O/MtzslO5w="; + }; + + nativeBuildInputs = [ setuptools setuptools-scm ]; + + pythonImportsCheck = [ "stringparser" ]; + + nativeCheckInputs = [ pytestCheckHook ]; + + meta = with lib; { + description = "Easy to use pattern matching and information extraction"; + homepage = "https://github.com/hgrecco/stringparser"; + license = licenses.bsd3; + maintainers = with maintainers; [ evilmav ]; + }; +} diff --git a/pkgs/development/python-modules/takethetime/default.nix b/pkgs/development/python-modules/takethetime/default.nix index e6f5dd93b29fa..7bc914ed85db2 100644 --- a/pkgs/development/python-modules/takethetime/default.nix +++ b/pkgs/development/python-modules/takethetime/default.nix @@ -1,37 +1,26 @@ { lib , buildPythonPackage -, fetchFromGitHub +, fetchPypi , pythonOlder -, pytestCheckHook }: -buildPythonPackage { +buildPythonPackage rec { pname = "takethetime"; version = "0.3.1"; - # pypi distribution doesn't include tests, so build from source instead - src = fetchFromGitHub { - owner = "ErikBjare"; - repo = "TakeTheTime"; - rev = "b0042ac5b1cc9d3b70ef59167b094469ceb660dd"; - sha256 = "sha256-DwsMnP6G3BzOnINttaSC6QKkIKK5qyhUz+lN1DSvkw0="; + src = fetchPypi { + pname = "TakeTheTime"; + inherit version; + sha256 = "sha256-2+MEU6G1lqOPni4/qOGtxa8tv2RsoIN61cIFmhb+L/k="; }; disabled = pythonOlder "3.6"; - nativeCheckInputs = [ pytestCheckHook ]; - - pytestFlagsArray = [ "tests/tests.py" ]; + # all tests are timing dependent + doCheck = false; pythonImportsCheck = [ "takethetime" ]; - # Latest release is v0.3.1 on pypi, but this version was not bumped in - # the setup.py, causing packages that depend on v0.3.1 to fail to build. - postPatch = '' - substituteInPlace setup.py \ - --replace "version='0.3'" "version='0.3.1'" - ''; - meta = with lib; { description = "Simple time taking library using context managers"; homepage = "https://github.com/ErikBjare/TakeTheTime"; diff --git a/pkgs/development/python-modules/tensorflow/bin.nix b/pkgs/development/python-modules/tensorflow/bin.nix index a2e7b2d21e8ac..a988a39c388b2 100644 --- a/pkgs/development/python-modules/tensorflow/bin.nix +++ b/pkgs/development/python-modules/tensorflow/bin.nix @@ -201,7 +201,7 @@ in buildPythonPackage { homepage = "http://tensorflow.org"; sourceProvenance = with sourceTypes; [ binaryNativeCode ]; license = licenses.asl20; - maintainers = with maintainers; [ jyp abbradar cdepillabout ]; + maintainers = with maintainers; [ jyp abbradar ]; platforms = [ "x86_64-linux" "x86_64-darwin" ]; }; } diff --git a/pkgs/development/python-modules/tidalapi/default.nix b/pkgs/development/python-modules/tidalapi/default.nix index 405b7cea11987..7d9ac9a6044a8 100644 --- a/pkgs/development/python-modules/tidalapi/default.nix +++ b/pkgs/development/python-modules/tidalapi/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "tidalapi"; - version = "0.7.0"; + version = "0.7.1"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-LdlTBkCOb7tXiupsNJ5lbk38syKXeADvi2IdGpW/dk8="; + hash = "sha256-ttOjw6VXR36QL/GUQXjpPWrE617Bmdt0piUsA4O5W/g="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/tldextract/default.nix b/pkgs/development/python-modules/tldextract/default.nix index eabc83d7e64e8..bf2d6db0ad471 100644 --- a/pkgs/development/python-modules/tldextract/default.nix +++ b/pkgs/development/python-modules/tldextract/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "tldextract"; - version = "3.4.1"; + version = "3.4.2"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-+p5QxKA77eKh2V3KYg1mFnhIRiaFjM84jPlnGg3Ul6Q="; + hash = "sha256-mONrCqOm2P0ITYDXWuE3LaAgJ++1VsFGpZ39FEVwcbo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/tplink-omada-client/default.nix b/pkgs/development/python-modules/tplink-omada-client/default.nix index a451f2b24da67..aea8fee410ad4 100644 --- a/pkgs/development/python-modules/tplink-omada-client/default.nix +++ b/pkgs/development/python-modules/tplink-omada-client/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "tplink-omada-client"; - version = "1.2.5"; + version = "1.3.0"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -18,7 +18,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "tplink_omada_client"; inherit version; - hash = "sha256-I9lD99IxEq97ANJx0Aeh7YXdPU6izEjWgjJHCaiAWRI="; + hash = "sha256-+6HEJBMYaw/8VTdl3YK5uaAYTiyhqe1Zvuxsk2ltci8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/transmission-rpc/default.nix b/pkgs/development/python-modules/transmission-rpc/default.nix index 295989c8772f6..24626a9d66c89 100644 --- a/pkgs/development/python-modules/transmission-rpc/default.nix +++ b/pkgs/development/python-modules/transmission-rpc/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "transmission-rpc"; - version = "4.2.2"; + version = "4.3.0"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "Trim21"; repo = "transmission-rpc"; rev = "refs/tags/v${version}"; - hash = "sha256-8gNGBfU7k2SvpNqRGkT9BXyAyKizUCXY8Unuqw5IICE="; + hash = "sha256-kcrPUBpx8puhG4de55tDGDmOnJPAOZzr+zC5gRd8b0s="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/tubeup/default.nix b/pkgs/development/python-modules/tubeup/default.nix index f060521da90d3..a61e0f33e99d0 100644 --- a/pkgs/development/python-modules/tubeup/default.nix +++ b/pkgs/development/python-modules/tubeup/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "tubeup"; - version = "28.5.2023"; + version = "2023.5.29"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-wsYap8OspTPW3BBtFF3a2oyRgmu3W/dywbkFuNjvzhg="; + sha256 = "sha256-5tvRaIXVzZcNy40uOEPwwN4EKPvvZPiR3qIdmiZSXWw="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/twilio/default.nix b/pkgs/development/python-modules/twilio/default.nix index 02cb7501cbeb5..475af0b4d4aac 100644 --- a/pkgs/development/python-modules/twilio/default.nix +++ b/pkgs/development/python-modules/twilio/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "twilio"; - version = "8.2.1"; + version = "8.2.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "twilio"; repo = "twilio-python"; rev = "refs/tags/${version}"; - hash = "sha256-joL+6+LfrF2bWkw3hViA97RYqcMVWw+MlHub+OaXlgI="; + hash = "sha256-UXQMDP5JjxTnHpvw730Yz0U8/CwYdRz3R64TP0Zgbcw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/txtorcon/default.nix b/pkgs/development/python-modules/txtorcon/default.nix index 6a4a098856b87..c1acef68d19a5 100644 --- a/pkgs/development/python-modules/txtorcon/default.nix +++ b/pkgs/development/python-modules/txtorcon/default.nix @@ -20,14 +20,14 @@ buildPythonPackage rec { pname = "txtorcon"; - version = "23.0.0"; + version = "23.5.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-AiX/rWdokTeEmtmtNK21abDYj5rwRQMABnpfkB6ZQyU="; + hash = "sha256-k/2Aqd1QX2mNCGT+k9uLapwRRLX+uRUwggtw7YmCZRw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/types-deprecated/default.nix b/pkgs/development/python-modules/types-deprecated/default.nix new file mode 100644 index 0000000000000..cc1102c035530 --- /dev/null +++ b/pkgs/development/python-modules/types-deprecated/default.nix @@ -0,0 +1,30 @@ +{ lib +, buildPythonPackage +, fetchPypi +}: + +buildPythonPackage rec { + pname = "types-deprecated"; + version = "1.2.9.2"; + format = "setuptools"; + + src = fetchPypi { + pname = "types-Deprecated"; + inherit version; + hash = "sha256-kWFv1nRfi/LUV/u779FM3kODjp8AoEtaDq5Pwfe7xpc="; + }; + + # Modules has no tests + doCheck = false; + + pythonImportsCheck = [ + "deprecated-stubs" + ]; + + meta = with lib; { + description = "Typing stubs for Deprecated"; + homepage = "https://pypi.org/project/types-Deprecated/"; + license = with licenses; [ asl20 ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/types-pyopenssl/default.nix b/pkgs/development/python-modules/types-pyopenssl/default.nix index 2c6dc21c478d7..35530f37993f7 100644 --- a/pkgs/development/python-modules/types-pyopenssl/default.nix +++ b/pkgs/development/python-modules/types-pyopenssl/default.nix @@ -6,13 +6,13 @@ buildPythonPackage rec { pname = "types-pyopenssl"; - version = "23.0.0.4"; + version = "23.1.0.3"; format = "setuptools"; src = fetchPypi { pname = "types-pyOpenSSL"; inherit version; - hash = "sha256-izVQtuGdUc54qr1ySw2OvZYggaX86V5/haWS3828Fr8="; + hash = "sha256-5yEQiO/z4g01mIje3ssJlPcYHVzODyY1TdR8oEhNyKY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/types-requests/default.nix b/pkgs/development/python-modules/types-requests/default.nix index 0d3f869dc9b63..6b8d972e4624b 100644 --- a/pkgs/development/python-modules/types-requests/default.nix +++ b/pkgs/development/python-modules/types-requests/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "types-requests"; - version = "2.31.0.0"; + version = "2.31.0.1"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-wcKdIKuNhN/0aNf+v+jgywtGZFQyIbOGYF4UZytE6iU="; + hash = "sha256-PeZnz/oSPOaYWR3grX2wNKUxdFellusLSUTlqdno0aw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/universal-pathlib/default.nix b/pkgs/development/python-modules/universal-pathlib/default.nix new file mode 100644 index 0000000000000..2a23c01dd8e8e --- /dev/null +++ b/pkgs/development/python-modules/universal-pathlib/default.nix @@ -0,0 +1,37 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, flit-core +, fsspec +}: + +buildPythonPackage rec { + pname = "universal-pathlib"; + version = "0.0.23"; + format = "pyproject"; + + src = fetchFromGitHub { + owner = "fsspec"; + repo = "universal_pathlib"; + rev = "v${version}"; + hash = "sha256-UT4S7sqRn0/YFzFL1KzByK44u8G7pwWHERzJEm7xmiw="; + }; + + nativeBuildInputs = [ + flit-core + ]; + + propagatedBuildInputs = [ + fsspec + ]; + + pythonImportsCheck = [ "upath" ]; + + meta = with lib; { + description = "Pathlib api extended to use fsspec backends"; + homepage = "https://github.com/fsspec/universal_pathlib"; + changelog = "https://github.com/fsspec/universal_pathlib/releases/tag/${src.rev}"; + license = licenses.mit; + maintainers = with maintainers; [ figsoda ]; + }; +} diff --git a/pkgs/development/python-modules/verspec/default.nix b/pkgs/development/python-modules/verspec/default.nix new file mode 100644 index 0000000000000..05a6a446c23ed --- /dev/null +++ b/pkgs/development/python-modules/verspec/default.nix @@ -0,0 +1,42 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pretend +, pytestCheckHook +, pythonOlder +}: + +buildPythonPackage rec { + pname = "verspec"; + version = "0.1.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-xFBMppeyBWzbS/pxIUYfWg6BgJJVtBwD3aS6gjY3wB4="; + }; + + nativeCheckInputs = [ + pretend + pytestCheckHook + ]; + + disabledTestPaths = [ + # Import fail + "test/test_specifiers.py" + ]; + + pythonImportsCheck = [ + "verspec" + ]; + + meta = with lib; { + description = "Flexible version handling"; + homepage = "https://github.com/jimporter/verspec"; + changelog = "https://github.com/jimporter/averspec/releases/tag/v${version}"; + license = with licenses; [ bsd2 /* and */ asl20 ]; + maintainers = with maintainers; [ marsam ]; + }; +} diff --git a/pkgs/development/python-modules/vispy/default.nix b/pkgs/development/python-modules/vispy/default.nix index 3822e11438d8f..c30a9c07d5eea 100644 --- a/pkgs/development/python-modules/vispy/default.nix +++ b/pkgs/development/python-modules/vispy/default.nix @@ -17,14 +17,14 @@ buildPythonPackage rec { pname = "vispy"; - version = "0.12.2"; + version = "0.13.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-FBwt3MwRWFVbyJ8JAQxLHXVEh+gWNXMz8x55WnFGoCQ="; + hash = "sha256-tZ97z2UoyRS8ps60rZWZhMZgS+o0ZjASpyq4itiInq8="; }; patches = [ diff --git a/pkgs/development/python-modules/wagtail-factories/default.nix b/pkgs/development/python-modules/wagtail-factories/default.nix index 990fd0d8416af..42efebb8eafe1 100644 --- a/pkgs/development/python-modules/wagtail-factories/default.nix +++ b/pkgs/development/python-modules/wagtail-factories/default.nix @@ -8,13 +8,13 @@ buildPythonPackage rec { pname = "wagtail-factories"; - version = "4.0.0"; + version = "4.1.0"; src = fetchFromGitHub { repo = pname; owner = "wagtail"; - rev = version; - sha256 = "sha256-JmFWf+TODQNsSSxYD/JYVhWc82o6rJL13j5J23r8J9A="; + rev = "refs/tags/v${version}"; + sha256 = "sha256-xNLHJ/8IZt3pzHAzr9swcL6GcIQyIjIFfoeHUW1i76U="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/wagtail-localize/default.nix b/pkgs/development/python-modules/wagtail-localize/default.nix index bff5431e1832b..fdd2e0e39a0e2 100644 --- a/pkgs/development/python-modules/wagtail-localize/default.nix +++ b/pkgs/development/python-modules/wagtail-localize/default.nix @@ -1,4 +1,5 @@ -{ buildPythonPackage +{ lib +, buildPythonPackage , dj-database-url , django , django-rq @@ -6,9 +7,9 @@ , flit-core , freezegun , google-cloud-translate -, lib , polib , python +, pythonOlder , typing-extensions , wagtail }: @@ -18,13 +19,19 @@ buildPythonPackage rec { version = "1.5"; format = "pyproject"; + disabled = pythonOlder "3.7"; + src = fetchFromGitHub { repo = pname; owner = "wagtail"; - rev = "v${version}"; - sha256 = "sha256-aNz4OoUUXWMCahMxuYBxvNWnw7Inxd5svBgwLgoirW8="; + rev = "refs/tags/v${version}"; + hash = "sha256-aNz4OoUUXWMCahMxuYBxvNWnw7Inxd5svBgwLgoirW8="; }; + nativeBuildInputs = [ + flit-core + ]; + propagatedBuildInputs = [ django wagtail @@ -32,20 +39,22 @@ buildPythonPackage rec { typing-extensions ]; - checkInputs = [ + nativeCheckInputs = [ dj-database-url django-rq freezegun google-cloud-translate ]; - nativeBuildInputs = [ flit-core ]; - passthru.optional-dependencies = { - google = [ google-cloud-translate ]; + google = [ + google-cloud-translate + ]; }; checkPhase = '' + # test_translate_html fails with later Beautifulsoup releases + rm wagtail_localize/machine_translators/tests/test_dummy_translator.py ${python.interpreter} testmanage.py test ''; diff --git a/pkgs/development/python-modules/wagtail/default.nix b/pkgs/development/python-modules/wagtail/default.nix index 54f5a8ce1790c..2bbff0485b219 100644 --- a/pkgs/development/python-modules/wagtail/default.nix +++ b/pkgs/development/python-modules/wagtail/default.nix @@ -1,4 +1,5 @@ -{ anyascii +{ lib +, anyascii , beautifulsoup4 , buildPythonPackage , callPackage @@ -12,10 +13,10 @@ , fetchPypi , html5lib , l18n -, lib , openpyxl , permissionedforms , pillow +, pythonOlder , requests , telepath , willow @@ -24,10 +25,13 @@ buildPythonPackage rec { pname = "wagtail"; version = "4.2.2"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-s89gs3H//Dc3k6BLZUC4APyDgiWY9LetWAkI+kXQTf8="; + hash = "sha256-s89gs3H//Dc3k6BLZUC4APyDgiWY9LetWAkI+kXQTf8="; }; postPatch = '' @@ -36,23 +40,23 @@ buildPythonPackage rec { ''; propagatedBuildInputs = [ + anyascii + beautifulsoup4 django + django_treebeard + django-filter django-modelcluster django-taggit - django_treebeard djangorestframework - django-filter - pillow - beautifulsoup4 + draftjs-exporter html5lib - willow - requests + l18n openpyxl - anyascii - draftjs-exporter permissionedforms + pillow + requests telepath - l18n + willow ]; # Tests are in separate derivation because they require a package that depends diff --git a/pkgs/development/python-modules/wallbox/default.nix b/pkgs/development/python-modules/wallbox/default.nix index da2b93e9d67be..4fe26418ef830 100644 --- a/pkgs/development/python-modules/wallbox/default.nix +++ b/pkgs/development/python-modules/wallbox/default.nix @@ -1,21 +1,22 @@ { lib +, aenum , buildPythonPackage -, pythonOlder , fetchPypi -, aenum +, pythonOlder , requests , simplejson }: buildPythonPackage rec { pname = "wallbox"; - version = "0.4.12"; + version = "0.4.14"; + format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-/RM1tqtGBCUa1fcqh5yvVQMNzaEqpAUPonciEIE6lC4="; + hash = "sha256-HKlq5DPG3HD9i9LLTJdlzEFim+2hBdSfKl43BojhEf8="; }; propagatedBuildInputs = [ @@ -27,11 +28,14 @@ buildPythonPackage rec { # no tests implemented doCheck = false; - pythonImportsCheck = [ "wallbox" ]; + pythonImportsCheck = [ + "wallbox" + ]; meta = with lib; { description = "Module for interacting with Wallbox EV charger api"; homepage = "https://github.com/cliviu74/wallbox"; + changelog = "https://github.com/cliviu74/wallbox/releases/tag/${version}"; license = licenses.mit; maintainers = with maintainers; [ dotlambda ]; }; diff --git a/pkgs/development/python-modules/waqiasync/default.nix b/pkgs/development/python-modules/waqiasync/default.nix index 3b8dfce61146a..8420ecbaef7fc 100644 --- a/pkgs/development/python-modules/waqiasync/default.nix +++ b/pkgs/development/python-modules/waqiasync/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "waqiasync"; - version = "1.0.0"; + version = "1.1.0"; src = fetchPypi { inherit pname version; - sha256 = "1yxls7ywfg954c3vxgnp98qa1b8dsq9b2fld11fb9sx1k4mjc29d"; + sha256 = "sha256-SOs998BQV4UlLnRB3Yf7zze51u43g2Npwgk6y80S+m8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/weasyprint/default.nix b/pkgs/development/python-modules/weasyprint/default.nix index 22c87ac209fb5..a3b1750410704 100644 --- a/pkgs/development/python-modules/weasyprint/default.nix +++ b/pkgs/development/python-modules/weasyprint/default.nix @@ -24,7 +24,7 @@ buildPythonPackage rec { pname = "weasyprint"; - version = "58.1"; + version = "59.0"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -32,7 +32,7 @@ buildPythonPackage rec { src = fetchPypi { inherit version; pname = "weasyprint"; - hash = "sha256-YXMAnjE75lgH/vv3ioBRzrepN3bv2n67uIwT9XaXlPM="; + hash = "sha256-Ijp2Y2s3ROqkq4oohfUM9Gz467GsuZtSdtAv7M9QdJI="; }; patches = [ diff --git a/pkgs/development/python-modules/wyoming/default.nix b/pkgs/development/python-modules/wyoming/default.nix new file mode 100644 index 0000000000000..984e3a285d526 --- /dev/null +++ b/pkgs/development/python-modules/wyoming/default.nix @@ -0,0 +1,29 @@ +{ lib +, buildPythonPackage +, fetchPypi +}: + +buildPythonPackage rec { + pname = "wyoming"; + version = "0.0.1"; + format = "setuptools"; + + src = fetchPypi { + inherit pname version; + hash = "sha256-EIUbKL8DNFNNGmLRcu12mlw4H+gAHmCUw09eLG0s8+M="; + }; + + pythonImportsCheck = [ + "wyoming" + ]; + + # no tests + doCheck = false; + + meta = with lib; { + description = "Protocol for Rhasspy Voice Assistant"; + homepage = "https://pypi.org/project/wyoming/"; + license = licenses.mit; + maintainers = with maintainers; [ hexa ]; + }; +} diff --git a/pkgs/development/python-modules/xapp/default.nix b/pkgs/development/python-modules/xapp/default.nix index 9613ccbeb06d5..cc8e3b62c45bd 100644 --- a/pkgs/development/python-modules/xapp/default.nix +++ b/pkgs/development/python-modules/xapp/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "xapp"; - version = "2.4.0"; + version = "2.4.1"; format = "other"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "linuxmint"; repo = "python-xapp"; rev = version; - hash = "sha256-qEK71cGNGmaThxlFVsfnLUTD83RTr8GP+501c4UbHCk="; + hash = "sha256-Kvhp+biZ+KK9FYma/8cUEaQCHPKMLjOO909kbyMLQ3o="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/xknxproject/default.nix b/pkgs/development/python-modules/xknxproject/default.nix new file mode 100644 index 0000000000000..907d796fb4b67 --- /dev/null +++ b/pkgs/development/python-modules/xknxproject/default.nix @@ -0,0 +1,49 @@ +{ lib +, buildPythonPackage +, cryptography +, fetchFromGitHub +, pytestCheckHook +, pythonOlder +, pyzipper +, setuptools +}: + +buildPythonPackage rec { + pname = "xknxproject"; + version = "3.1.0"; + format = "pyproject"; + + disabled = pythonOlder "3.9"; + + src = fetchFromGitHub { + owner = "XKNX"; + repo = "xknxproject"; + rev = "refs/tags/${version}"; + hash = "sha256-j9Bfzl1cYhmDV2Cw4/aobo6Uai50V5JrzQWrrkDm3lw="; + }; + + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + cryptography + pyzipper + ]; + + nativeCheckInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "xknxproject" + ]; + + meta = with lib; { + description = "ETS project parser"; + homepage = "https://github.com/XKNX/xknxproject"; + changelog = "https://github.com/XKNX/xknxproject/releases/tag/${version}"; + license = licenses.gpl2Only; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/xml2rfc/default.nix b/pkgs/development/python-modules/xml2rfc/default.nix index e6dd249565866..6803441e2b069 100644 --- a/pkgs/development/python-modules/xml2rfc/default.nix +++ b/pkgs/development/python-modules/xml2rfc/default.nix @@ -26,7 +26,7 @@ buildPythonPackage rec { pname = "xml2rfc"; - version = "3.17.1"; + version = "3.17.2"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -35,7 +35,7 @@ buildPythonPackage rec { owner = "ietf-tools"; repo = "xml2rfc"; rev = "refs/tags/v${version}"; - hash = "sha256-C5bc32XbAqJtzUbITj1U1ItaY2ZMEXM9z+B7dQadoIs="; + hash = "sha256-LwM0lfBJNSCMsa0AiGBRmuihc/kSLYQ4V6hgY5fM6/w="; }; postPatch = '' diff --git a/pkgs/development/python-modules/yamlfix/default.nix b/pkgs/development/python-modules/yamlfix/default.nix index 35eb9ea1ae426..bf29fdb831c45 100644 --- a/pkgs/development/python-modules/yamlfix/default.nix +++ b/pkgs/development/python-modules/yamlfix/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "yamlfix"; - version = "1.9.0"; + version = "1.10.0"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "lyz-code"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-av3QNfyPo/4GzFzQ60OrtPK6CV5AkN4FbbqgeBz4rY0="; + hash = "sha256-tRF2mi2xAjCKKbPVcJ7YEc4UVmSorgP9DFm8t1z0XoA="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/zeroconf/default.nix b/pkgs/development/python-modules/zeroconf/default.nix index 2a962bf085b39..075f2c58f491b 100644 --- a/pkgs/development/python-modules/zeroconf/default.nix +++ b/pkgs/development/python-modules/zeroconf/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "zeroconf"; - version = "0.62.0"; + version = "0.64.0"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "jstasiak"; repo = "python-zeroconf"; rev = "refs/tags/${version}"; - hash = "sha256-+jaZ582GdO7dUDr9dPPyy4uUm1mHigDieWN0mgBR+iI="; + hash = "sha256-u9MZoJyTmbUBeFbsw2EtwfNDzXKAZOwNc+4TanbQg3A="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/zha-quirks/default.nix b/pkgs/development/python-modules/zha-quirks/default.nix index 0c2fad1bcead2..2e9c3eb80f7b3 100644 --- a/pkgs/development/python-modules/zha-quirks/default.nix +++ b/pkgs/development/python-modules/zha-quirks/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "zha-quirks"; - version = "0.0.99"; + version = "0.0.100"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "zigpy"; repo = "zha-device-handlers"; rev = "refs/tags/${version}"; - hash = "sha256-09heRXlaqc+qbQj+LKodu6Pq1pgQ5eVZbihOMeO5EWU="; + hash = "sha256-EWGsnUnr83YuhEdGJ3YtlYm9VT+aTuUjfganhOeqt7o="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/r-modules/bioc-annotation-packages.nix b/pkgs/development/r-modules/bioc-annotation-packages.nix index 096c0f81e572f..2bd1dfb10fe3b 100644 --- a/pkgs/development/r-modules/bioc-annotation-packages.nix +++ b/pkgs/development/r-modules/bioc-annotation-packages.nix @@ -4,14 +4,14 @@ # Rscript generate-r-packages.R bioc-annotation >new && mv new bioc-annotation-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.16"; }; +let derive2 = derive { biocVersion = "3.17"; }; in with self; { AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.1"; sha256="0svxxhj3mh5gqik45ikcxnlhnma8n1c0rv8pycj2034cb9ms1dbv"; depends=[]; }; AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.1.8"; sha256="1bn39n8lwb6w533fl4vlszivb4b3x9adkjh04z98sbn333bicgki"; depends=[AnnotationHubData ensembldb]; }; - AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.5.0"; sha256="0dhh6a05a4m76h7gdg7yyya9aylls8ii8n14zkgyx9mhh9drhqq7"; depends=[AnnotationHub]; }; - AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.5.0"; sha256="1g3b9skkdnqbvrrz0jcclhy99abaaiwwasr7j4r4kvla5n9kbyrg"; depends=[AnnotationHub]; }; + AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.6.0"; sha256="0vz0chz41w45c1md49grav5jrbhws888ir1si9lp8dw7pj74vy9c"; depends=[AnnotationHub]; }; + AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.6.0"; sha256="0jd4i76qnr1vqqm3sq0ll8pdkihbkh83hqxzi3cvl3q786rxc1hk"; depends=[AnnotationHub]; }; AHPathbankDbs = derive2 { name="AHPathbankDbs"; version="0.99.5"; sha256="10wcrglm521xcrfbzc39dkbjvg1pkz0zq70vgnh68akiwmdirp89"; depends=[AnnotationHub]; }; - AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="1.5.0"; sha256="071z6m2301njdwiq0x0dw61k7ckyimj81jacy25y9chclys8j5cq"; depends=[AnnotationHub]; }; + AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="1.6.0"; sha256="1lhr1gzifg7h73q1k4yrx508v6ynr0pa2kyj4733rwmr2z26n0gp"; depends=[AnnotationHub]; }; AHWikipathwaysDbs = derive2 { name="AHWikipathwaysDbs"; version="0.99.4"; sha256="0vz3p9sx36bwzl9rq0ffh7klbq13pv2yhgjq1cjk7ll8z226c0q4"; depends=[AnnotationHub]; }; BSgenome_Alyrata_JGI_v1 = derive2 { name="BSgenome.Alyrata.JGI.v1"; version="1.0.1"; sha256="062ap94m6s4w8clg1zlj223wmgbmq19yhksx9fcdcqrxr5kbfv85"; depends=[BSgenome]; }; BSgenome_Amellifera_BeeBase_assembly4 = derive2 { name="BSgenome.Amellifera.BeeBase.assembly4"; version="1.4.0"; sha256="02zs16q441zcbfp7xvv1gny5nn02ivfr8md1wh5s5rpnj6sdl6kj"; depends=[BSgenome]; }; @@ -148,9 +148,9 @@ in with self; { FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; }; FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; }; GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; }; - GO_db = derive2 { name="GO.db"; version="3.16.0"; sha256="13iv94wl2adqrwvcmicrxiz3jmji6v4znvhkkgmsx053icnq2lj6"; depends=[AnnotationDbi]; }; + GO_db = derive2 { name="GO.db"; version="3.17.0"; sha256="072062xdhjsadzwlkp4gas7fyxnajg3xjd2vfadc7j0k1034igjx"; depends=[AnnotationDbi]; }; GeneSummary = derive2 { name="GeneSummary"; version="0.99.4"; sha256="0fliy0z1byh7zlf7k3lklarrd2l2rl3sgliqsxnn4sviskv2rlxz"; depends=[]; }; - GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.9"; sha256="1yj5vhd05d2alh9cgvq5jz9sl754g8zfhpf9kyiyvvyfisd72fp6"; depends=[]; }; + GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.10"; sha256="0r7qb1nh680c0d5iplr2r0xb2prirvcc1xam5m8qyghndmaxpibl"; depends=[]; }; GenomicState = derive2 { name="GenomicState"; version="0.99.15"; sha256="1r7z3n6wyrd2cclj5b7sg15wpmjdh9k5b1hjlw7jjx8j384l7l1h"; depends=[AnnotationDbi AnnotationHub bumphunter derfinder GenomeInfoDb GenomicFeatures IRanges org_Hs_eg_db rtracklayer]; }; HDO_db = derive2 { name="HDO.db"; version="0.99.1"; sha256="14ngyxailmxrbxqqi9m7mchqcvchmbg7zm34i8a927b20s6z4z61"; depends=[AnnotationDbi]; }; Homo_sapiens = derive2 { name="Homo.sapiens"; version="1.3.1"; sha256="151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"; depends=[AnnotationDbi GenomicFeatures GO_db org_Hs_eg_db OrganismDbi TxDb_Hsapiens_UCSC_hg19_knownGene]; }; @@ -201,9 +201,9 @@ in with self; { Mus_musculus = derive2 { name="Mus.musculus"; version="1.3.1"; sha256="143zdf83gbfqhy8jm9df7gzhw5q3a64jrjrxrzjf0zd76j8s8j6y"; depends=[AnnotationDbi GenomicFeatures GO_db org_Mm_eg_db OrganismDbi TxDb_Mmusculus_UCSC_mm10_knownGene]; }; Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; }; OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; }; - Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.16.0"; sha256="0m696d1pwnaiymv4c9wmhl05jgwa64n98xvv4czyg1wjxxdly9z7"; depends=[AnnotationDbi]; }; + Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.17.0"; sha256="06vvfr3rw44kgwa90wp1byijpy4svx25136kb7n658qkhsivgv0c"; depends=[AnnotationDbi]; }; PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.11"; sha256="0ckhrbhcxf7lq1hz1lrkrb7djjsfy7m0abf3665aagk6vvzigxy8"; depends=[AnnotationDbi AnnotationHub BiocFileCache RSQLite]; }; - PFAM_db = derive2 { name="PFAM.db"; version="3.16.0"; sha256="035k1vappczks14jms7azl9bvgg1z67svbng8b7v4qmr9slsm0l0"; depends=[AnnotationDbi]; }; + PFAM_db = derive2 { name="PFAM.db"; version="3.17.0"; sha256="04hp22k2w6i81l3z22msqgjp4q37w5mi3i74yxzghb80pzmqnkwc"; depends=[AnnotationDbi]; }; POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; }; PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; }; PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; @@ -220,8 +220,8 @@ in with self; { SNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.20"; sha256="0yxmsnxncr7w30r0d7bg5i96pclm2vf40p9jdqa02rc67a6sximn"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP149_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP149.GRCh38"; version="0.99.20"; sha256="17bv25p1261hn9d7mxfp6pvivj15pxyvr92gms8a8msfqg9y0xkb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP150_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP150.GRCh38"; version="0.99.20"; sha256="0jkwwgxxpm9ry8kizq8hs70sky41pks1ag40y5aqq91yjbpqlckj"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SNPlocs_Hsapiens_dbSNP155_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP155.GRCh37"; version="0.99.23"; sha256="1hl63ph2j8s2igwgp0xs35a366wa7f1x6bmid09k6wqx8fcdilgy"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SNPlocs_Hsapiens_dbSNP155_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP155.GRCh38"; version="0.99.23"; sha256="0j4skfz6g7ir1igqbql0hk04871vpfqg7dpmvv9z6k2mx9lnrh7w"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SNPlocs_Hsapiens_dbSNP155_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP155.GRCh37"; version="0.99.24"; sha256="0am2r8hn5ybxlvlw7c0i91n5xii0km3iy7d9a0wc9v1ykvk6qmgz"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SNPlocs_Hsapiens_dbSNP155_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP155.GRCh38"; version="0.99.24"; sha256="1yzywcyk1yngjys9pyykilzw0w4nfxdmwz04w3b17chsbxvckl5s"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; }; @@ -234,6 +234,7 @@ in with self; { TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.11.0"; sha256="0rigyddnqxb3dfrj93198j0l8s1flp051xbkmz0b55qp1cyrl5kr"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Cfamiliaris_UCSC_canFam4_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam4.refGene"; version="3.14.0"; sha256="1xw3kkn2kbrv0yni95sm4sbrxzsg5y21si1plpfcdij78ndhia7d"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Cfamiliaris_UCSC_canFam5_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam5.refGene"; version="3.14.0"; sha256="1ikadiq14rn8f5ayas0ndkwpafzhpbmawgczyq2hcrl4jpky8vdj"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Cfamiliaris_UCSC_canFam6_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam6.refGene"; version="3.17.0"; sha256="0ywbgcpd9cpyz7gjjv38fqin89iiqv3mmh3q16yv5aqqx0sykjsq"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Dmelanogaster_UCSC_dm3_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm3.ensGene"; version="3.2.2"; sha256="1337x23rdmiiza83ms225kri37h16q5hw1lw0m577abcgip3d7c7"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.12.0"; sha256="0yij7zyqkmmr13389rs2gfa5anvvw648nnl1kjbsgvyxkggif8q4"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.4.6"; sha256="1isd4idvh9flvirrq760cw5lc1nwqjx0q76p9dp01wbbbsb3rfnk"; depends=[AnnotationDbi GenomicFeatures]; }; @@ -245,13 +246,14 @@ in with self; { TxDb_Hsapiens_UCSC_hg18_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg18.knownGene"; version="3.2.2"; sha256="1yk9ggclkqqfzrdp8gcqyplvif824pa7df54ck5gb1xb9q5s975w"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg19.knownGene"; version="3.2.2"; sha256="1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.16.0"; sha256="1kphpnfibyfh5qqki8ivngynsr81jfqw04ysya6xq2llldh8i137"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.17.0"; sha256="14df4ywnndivz5fl2w7k7j87b3ymxrwipd0bcbbik386qiirn36b"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg38_refGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.refGene"; version="3.15.0"; sha256="03ca3spvhci16fndy82fx0cik0a6yqj77l6nfvv5k9qg3xnrp179"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac10_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac10.refGene"; version="3.14.0"; sha256="12gxs6s57l22013g40b7hb09vxhmdri73cp9rgs2icb88p7sjlib"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.12.0"; sha256="1a0wbh4dajpgynmw2iwbvp836nklzlk0cfhqnwmqq9l4gzzh2w07"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.12.0"; sha256="1k7mq3p96wfd0694zw00hs4529zvv8nnfdwlsb94bn11qjhr1zrz"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm10_ensGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.ensGene"; version="3.4.0"; sha256="0saxi1fdiwd38sfvy1rynd3v44rbp158jv6sjqcivvaqnd84zg9s"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm10_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.knownGene"; version="3.10.0"; sha256="0xs9npnhbwll7p62hibs02y4ac23jchdcr25i6a7qwq1kms82qk9"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Mmusculus_UCSC_mm39_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm39.knownGene"; version="3.17.0"; sha256="1y02x3jzgqqb3qp5rlkk3wmfh8avls3ams40yaxkypy2gk8xp5lv"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm39_refGene = derive2 { name="TxDb.Mmusculus.UCSC.mm39.refGene"; version="3.12.0"; sha256="0465dma4q6jkyx23vkq4yz252mm1ksr3186cbjdqvnang57m5lc6"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm9_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm9.knownGene"; version="3.2.2"; sha256="16bjxy00363hf91ik2mqlqls86i07gia72qh92xc3l1ncch61mx2"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.12.0"; sha256="036g5zn9rzy8qivb1snhpancsz1z60i3r7z3g91bgla4jpgwwjv6"; depends=[AnnotationDbi GenomicFeatures]; }; @@ -277,22 +279,22 @@ in with self; { agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; }; alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.1.0"; sha256="0q90nw3ds66zbyn3ch19lq1qimd1hz1s3jyyd6zi3v10p5s8bm0y"; depends=[AnnotationHub]; }; alternativeSplicingEvents_hg38 = derive2 { name="alternativeSplicingEvents.hg38"; version="1.1.0"; sha256="18qabggvs9mcg8fwd6prdca8lfxn9r9i0493l667n8jl9vy2pbfc"; depends=[AnnotationHub]; }; - anopheles_db0 = derive2 { name="anopheles.db0"; version="3.16.0"; sha256="0mmhbm5hzz739jv0028wna03zk6lphiwac5qhg55w8y19kclkvc2"; depends=[AnnotationDbi]; }; - arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.16.0"; sha256="1gir9xvfx7zccj3y3k6g9bli330pmlwc6gn8ajf513a2w4gl0z4q"; depends=[AnnotationDbi]; }; + anopheles_db0 = derive2 { name="anopheles.db0"; version="3.17.0"; sha256="09i1s2q44wy0ai45gzci6bymbs6blxzv82pakxgmlaazslx9wcwg"; depends=[AnnotationDbi]; }; + arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.17.0"; sha256="121fg8j4i6ayf7yqjfp3mhhib10xklh9nays7z35ddi8zv1j852n"; depends=[AnnotationDbi]; }; ath1121501_db = derive2 { name="ath1121501.db"; version="3.13.0"; sha256="0v4vapbns71dpv09857lyrnliq202i8yi4ar9z81wbpbc22lhf0d"; depends=[AnnotationDbi org_At_tair_db]; }; ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; }; ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; }; barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; }; barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; }; bovine_db = derive2 { name="bovine.db"; version="3.13.0"; sha256="06692b1n0lzhg0biixipsnwx33w9y8wkc7pc5q1lkjfzbmd2inml"; depends=[AnnotationDbi org_Bt_eg_db]; }; - bovine_db0 = derive2 { name="bovine.db0"; version="3.16.0"; sha256="02abx3ygnh1pnks8rbf2k86a1kzkbv7vfykkln22anvf2a41qd0d"; depends=[AnnotationDbi]; }; + bovine_db0 = derive2 { name="bovine.db0"; version="3.17.0"; sha256="015xahvplj7jk6fky1pm5f5ywc01d15r8cvipckfgsi9zspfy492"; depends=[AnnotationDbi]; }; bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; }; bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; }; bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; }; bsubtilisprobe = derive2 { name="bsubtilisprobe"; version="2.18.0"; sha256="0k99hvgaswn96x4yanvr9cy8bdy69sd5q7yp6dj9synxj7s1fcw9"; depends=[AnnotationDbi]; }; cMAP = derive2 { name="cMAP"; version="1.15.1"; sha256="0pzizm27rgcaic7wsh52z30v1jwarmz4cwh1mksbygp63k54mwiv"; depends=[]; }; canine_db = derive2 { name="canine.db"; version="3.13.0"; sha256="1x1mlh0p6r2l5kclarqwgiw9y64xc8jhp6252hhpl9bpnn638n3s"; depends=[AnnotationDbi org_Cf_eg_db]; }; - canine_db0 = derive2 { name="canine.db0"; version="3.16.0"; sha256="0cn1czv87dmmc706n7l8995pv1xa57f8agx5xdfdba3d50snwh7p"; depends=[AnnotationDbi]; }; + canine_db0 = derive2 { name="canine.db0"; version="3.17.0"; sha256="1z3ynhfp0kdi2r38szzlsj5g7zmay4zsvpgcl9hzqfqyhvhdp396"; depends=[AnnotationDbi]; }; canine2_db = derive2 { name="canine2.db"; version="3.13.0"; sha256="1xzz0vivdypwl6kaq2ba02jkpxw0r9r98297ilksdh8m71f244si"; depends=[AnnotationDbi org_Cf_eg_db]; }; canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; }; canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; }; @@ -302,10 +304,10 @@ in with self; { celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; }; celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; }; chicken_db = derive2 { name="chicken.db"; version="3.13.0"; sha256="0szb7sgassw10kzm8iz8h3fdbxm6v0kz95yb3a9icj2chi5d1m2i"; depends=[AnnotationDbi org_Gg_eg_db]; }; - chicken_db0 = derive2 { name="chicken.db0"; version="3.16.0"; sha256="1r3svjlr536q3zicq7k0wvw6szpdj81h3bjb3f4a0f3rlxzrakif"; depends=[AnnotationDbi]; }; + chicken_db0 = derive2 { name="chicken.db0"; version="3.17.0"; sha256="1rh1qw85awkm3654f10dqkzsznncrjc99fr1qgx1pr0s7c4f1dcv"; depends=[AnnotationDbi]; }; chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; }; chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; }; - chimp_db0 = derive2 { name="chimp.db0"; version="3.16.0"; sha256="04lzica0hgq7xrdspzidfnjgjg9cxhy2wjcz4vndlx519jlwdrny"; depends=[AnnotationDbi]; }; + chimp_db0 = derive2 { name="chimp.db0"; version="3.17.0"; sha256="1xbi42kpnw57qzkhqnnispmr3pnzk86fi7plxq25pxsqygrlzim3"; depends=[AnnotationDbi]; }; chromhmmData = derive2 { name="chromhmmData"; version="0.99.2"; sha256="13g6x7lzmkz9qv7yr6ps8gsgilgr048lc7y0y7xsfa9ws3n08fzj"; depends=[]; }; citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; }; citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; }; @@ -329,15 +331,15 @@ in with self; { ecoli2_db = derive2 { name="ecoli2.db"; version="3.13.0"; sha256="1i2arr26hch7lmx2bixzy4l0zaa0gynah4dfwa98cvb24ahqqj9f"; depends=[AnnotationDbi org_EcK12_eg_db]; }; ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; }; ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; }; - ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.16.0"; sha256="17khj10g2nsim40w9c6wc79hx5xx4g2n0hnvigsxm3l0a38vsz12"; depends=[AnnotationDbi]; }; - ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.16.0"; sha256="09n18nv2v4c7j472ygzpv808p473gfnifh9vnzm79ifjiixvzx4w"; depends=[AnnotationDbi]; }; + ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.17.0"; sha256="1vh7c9kn4fmbz2l4fz32xk9xs61kv6xr6abwwzkf1mvnjkjgcy2q"; depends=[AnnotationDbi]; }; + ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.17.0"; sha256="12sn7ssxgjzsfq4w0k62f0fh0xyv8ismxip9g05qvqz39r2j4pyj"; depends=[AnnotationDbi]; }; ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; }; ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; }; ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; }; ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; }; excluderanges = derive2 { name="excluderanges"; version="0.99.8"; sha256="19pdwlhqlz420yss371bsqhkx8c7wxr0sv4wsycnc0mlplwq4bsf"; depends=[GenomicRanges]; }; fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.7.1"; sha256="19isa4x8js0pdb4k8a11bw3bzmzv6jc4jphzrvav7piqkvrgykzx"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - fly_db0 = derive2 { name="fly.db0"; version="3.16.0"; sha256="1mjd1g0pazhzgwiwll71fhqcisilc5wqz7dnl8ypxd7v7915w8jr"; depends=[AnnotationDbi]; }; + fly_db0 = derive2 { name="fly.db0"; version="3.17.0"; sha256="0xsrzgp7ifi91hhfdq88k7jzamkhpyf8c3mxk0nfn9rqaam9dyr4"; depends=[AnnotationDbi]; }; geneplast_data = derive2 { name="geneplast.data"; version="0.99.6"; sha256="1vq2l828d25lsmmac6079vip8bbvqhiyr1x58s467cwcl1mgayrk"; depends=[]; }; geneplast_data_string_v91 = derive2 { name="geneplast.data.string.v91"; version="0.99.6"; sha256="0mc26d0sgmpmfmqsqinqv5k6vhg0hlc8hsjkcnvf369yav224nq1"; depends=[]; }; genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; }; @@ -470,7 +472,7 @@ in with self; { hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.8.0"; sha256="00fjhz7gac0rssn3kplag68vfx7gimjrm4mc7z516bs013rppgsz"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.8.0"; sha256="0s4zl9lv5w3fkb9axhz9siliz73brwarw8a7cam1p9b2kmdrdqs0"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.8.0"; sha256="1g7yfva96vhkdvcvsjwsj7sy8q6kczd5rmcwrwjc73v9qi4ywgal"; depends=[AnnotationDbi org_Hs_eg_db]; }; - human_db0 = derive2 { name="human.db0"; version="3.16.0"; sha256="1gjikb5rp6qh5cv90hylhjkna4kp084mxawqv0x1z5kl8lx8dfgk"; depends=[AnnotationDbi]; }; + human_db0 = derive2 { name="human.db0"; version="3.17.0"; sha256="1gzbb6z53sgd682rjr3z2n5k6pdx1zpyxhmy1s9247dx6pqc7say"; depends=[AnnotationDbi]; }; human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; }; human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; }; human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; }; @@ -508,7 +510,7 @@ in with self; { m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; }; maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; }; maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; }; - malaria_db0 = derive2 { name="malaria.db0"; version="3.16.0"; sha256="0mgwrhlcac6vxvb9b8m9xx1v2yav04sdgw649vkaq7a8kbzwywas"; depends=[AnnotationDbi]; }; + malaria_db0 = derive2 { name="malaria.db0"; version="3.17.0"; sha256="1mppsx7h8kvizfaz9gq37c483cpf4aqcvr21r8296ra521q7527s"; depends=[AnnotationDbi]; }; medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; }; medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; }; metaboliteIDmapping = derive2 { name="metaboliteIDmapping"; version="1.0.0"; sha256="0nflpvla3wn8i2gaja5wwjkxk0jich95f5ws3rnhh2a6rx3xi3ql"; depends=[AnnotationHub]; }; @@ -563,7 +565,7 @@ in with self; { mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bpzpba9aifc7w6qbrh6rnc636k6z1r9gz03sxvc3aa3977p9xag"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.8.0"; sha256="172bhzqqw5hz76bw8vqwx2qpw4f6rwbcm6savmkxmmhzb2nq60z5"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.8.0"; sha256="02g2n5nkxi9lqw9h7sbkblk99zd57lkrldqb1fmi9zww59qwagrv"; depends=[AnnotationDbi org_Mm_eg_db]; }; - mouse_db0 = derive2 { name="mouse.db0"; version="3.16.0"; sha256="0nr2s573najg1n8jl73040cglqmgb169rv9mhk8zmcc4zqgfaa0k"; depends=[AnnotationDbi]; }; + mouse_db0 = derive2 { name="mouse.db0"; version="3.17.0"; sha256="05q8x1iq2a3d8591b00vf5m1394mywl9k5wg58xyj9vznf69j4jg"; depends=[AnnotationDbi]; }; mouse4302_db = derive2 { name="mouse4302.db"; version="3.13.0"; sha256="0rf22kfj6y96ap0gcwq3mnpv6fj0yax37gf51sfi0wkmp95k7rcs"; depends=[AnnotationDbi org_Mm_eg_db]; }; mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; }; mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; }; @@ -601,25 +603,25 @@ in with self; { nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; }; oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; }; ontoProcData = derive2 { name="ontoProcData"; version="0.99.9901"; sha256="16wwh539hdm89f1vxqfgjmlbqwadnr4xqap80annsqgfn90mi8rk"; depends=[]; }; - org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.16.0"; sha256="07p8v4ls2s2svd0r276nn4w125iimcq78395r9pmx9x0vw2a6xvj"; depends=[AnnotationDbi]; }; - org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.16.0"; sha256="15xgqgnd4qmnhx9fd95g40zr07iiw97jkjhmp1whdc5cvd2bhjwm"; depends=[AnnotationDbi]; }; - org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.16.0"; sha256="12smyjq1bl1s4j06r3klqbm491in4ndjqnk7j6vydyjrz9jwkdcs"; depends=[AnnotationDbi]; }; - org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.16.0"; sha256="0sa4g769wddw4gk3p8103x48hggn6hab28pnsm7idginz5gygc70"; depends=[AnnotationDbi]; }; - org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.16.0"; sha256="0w75s2zqvq1rxgvbcnif01fmyj5ajvx9m7jfdb86al8jm3pcd61x"; depends=[AnnotationDbi]; }; - org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.16.0"; sha256="1ss1sd9g0lzqa7il4wkchlwqxyrc0wirkdxzd18fmqij7wvwa0pb"; depends=[AnnotationDbi]; }; - org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.16.0"; sha256="1vxnf0b5v0lc963vqrzhccya895fhbzzarfwm54gwd7zj9r7chy0"; depends=[AnnotationDbi]; }; - org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.16.0"; sha256="1n9l2y213187fnbxsyyq51rkl9ck895gymbnacg5krj668h08g6j"; depends=[AnnotationDbi]; }; - org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.16.0"; sha256="0rmis6gx2gwkjli9xp3vwrppp22kdlpxpywx38r0cfkxsaaaq9pi"; depends=[AnnotationDbi]; }; - org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.16.0"; sha256="1rdyxwfxiamr1x4zxngjc57a5zpdycjnq5b9xxx9wih8md8ij5aq"; depends=[AnnotationDbi]; }; - org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.16.0"; sha256="02ic79qb6b3vp50g44736gkmlx1hsjhfadj7dp463fqdzbg6ybid"; depends=[AnnotationDbi]; }; - org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.16.0"; sha256="030wpxzp4lf3fs6wxp1vwrlclxjsq8i507wwvnbhkl9lcys5f0x0"; depends=[AnnotationDbi]; }; - org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.16.0"; sha256="0sm147m9xp4xdzga2kk8d5zdfgb3qzxz57hhb093ph1a4hyczl64"; depends=[AnnotationDbi]; }; + org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.17.0"; sha256="1gwsd8py3519wx7scrz1xn0wqrdq070b4zj24q0igdklj2695a3w"; depends=[AnnotationDbi]; }; + org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.17.0"; sha256="0nwq9g7w60qh0pyz1vs4yx00wzr4mvrvyqgvs14jgn8xrdxhvc83"; depends=[AnnotationDbi]; }; + org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.17.0"; sha256="0laa3fc5mi58v6svf53a09608mckckdnfq9ghq5j99xdad67ff64"; depends=[AnnotationDbi]; }; + org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.17.0"; sha256="0rc230nw2bk4yfldxa82givlrpcwg2ym2pvvdlzxg9jvz1w2m0bh"; depends=[AnnotationDbi]; }; + org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.17.0"; sha256="15p8cyxcw50d1bmqrwlr1rc7bk90phb1sl8nqbqk8xiwdi0fr661"; depends=[AnnotationDbi]; }; + org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.17.0"; sha256="0lb6jgccnw02q5znavwj98hghkfzflsckxhsrq64l599d0p0w0qh"; depends=[AnnotationDbi]; }; + org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.17.0"; sha256="0lf25hyq2rqgvhhm1qank75kd806zrdv3z2cy94p7rrgi1k09pvf"; depends=[AnnotationDbi]; }; + org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.17.0"; sha256="12pv4l72rkpb0bqg251gkdb5z6mr71jm08f9iz3225nb04z5vrfk"; depends=[AnnotationDbi]; }; + org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.17.0"; sha256="0kfjc18c7ml679557x3z720bl4k1zspzkkpgc1ddfq8sd1md9kbn"; depends=[AnnotationDbi]; }; + org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.17.0"; sha256="1kbhz66q57yac7d8iic54nfkiv9z94wfxymj6k0n86x83bv8y3cs"; depends=[AnnotationDbi]; }; + org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.17.0"; sha256="03hs41g28fndvljbqxqz7dyi8bvznbcnbdnbpqihbljh5fi4wwcl"; depends=[AnnotationDbi]; }; + org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.17.0"; sha256="1bnm7y265628p6gvjrf2id9n3k0az8ij94xxdjpfnv9s08w7y4ww"; depends=[AnnotationDbi]; }; + org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.17.0"; sha256="00g19aw37y0hcbflhhv4rpjgdvnncs2r8pmas1zrliz6hla8spjf"; depends=[AnnotationDbi]; }; org_Mxanthus_db = derive2 { name="org.Mxanthus.db"; version="1.0.27"; sha256="1jqwsdjz1d8fwqhq26lavb2kq739ddlb8khsh4b096vhnwv3dxg5"; depends=[AnnotationDbi AnnotationHub BiocFileCache BiocStyle]; }; - org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.16.0"; sha256="1jwma50lw8c0axr2hs1ij5wn26sl129gk7rcrrk2h1lh21zx48n0"; depends=[AnnotationDbi]; }; - org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.16.0"; sha256="1wvnd2f9nv0bgqan63b0v40mv1y8j1jcf30hxlfx72r0isdpf4fh"; depends=[AnnotationDbi]; }; - org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.16.0"; sha256="03b8m4p865kzhjj8zyhmc0ic0n4jyjdl4h8a8xny10b7xs6l0v9f"; depends=[AnnotationDbi]; }; - org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.16.0"; sha256="1v793yxdszxg7hsj0f60qjxlflmpqjywcwmxrvizjzb9d76y6zrk"; depends=[AnnotationDbi]; }; - org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.16.0"; sha256="0j2xv59d65gin2v6d2gfsly6wyj9bmjpnld75qzlc7sqapa51li6"; depends=[AnnotationDbi]; }; + org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.17.0"; sha256="1ps1xqdlhn7f4n9xiy9bqsfs8v23gbslk4l22lbplmy025wnhbwa"; depends=[AnnotationDbi]; }; + org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.17.0"; sha256="0vrf427jn8idf8s8bba7yr8g4970da5rgqp1k17np6nkc4hqqisw"; depends=[AnnotationDbi]; }; + org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.17.0"; sha256="1anxk5sgzgkdk4n1c7gjyzy56wa2bkifghs9m1mh82l95kyvk2ig"; depends=[AnnotationDbi]; }; + org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.17.0"; sha256="0bjg95xq3r00zs0rlbwifc52mjb6zkfyc52m7phb7bwi44pdszxj"; depends=[AnnotationDbi]; }; + org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.17.0"; sha256="1bnaddxghz130n53nnhbda9pwi1dhsnam7wc95fldzajyzxa1fsb"; depends=[AnnotationDbi]; }; paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; }; paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; }; pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; @@ -799,7 +801,7 @@ in with self; { phastCons35way_UCSC_mm39 = derive2 { name="phastCons35way.UCSC.mm39"; version="3.16.0"; sha256="0lniqakqxja8inq3gn168w1xja1m2kbmww0cw971smsnddypmig7"; depends=[AnnotationHub GenomicScores]; }; phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.7.1"; sha256="105isdrb3nsy30wd8yy9vrrv8b7c8izc11xqqixg6rcriacd0rl0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; phyloP35way_UCSC_mm39 = derive2 { name="phyloP35way.UCSC.mm39"; version="3.16.0"; sha256="1n0iywfs23dhc54mapirvaqcbx38zjf8lknbsz80p5lxp24n2lf9"; depends=[AnnotationHub GenomicScores]; }; - pig_db0 = derive2 { name="pig.db0"; version="3.16.0"; sha256="0aj1xafsx1dg4w6mmfaaj87izgjfs8akj4dm5x7qzcmvxcd6sx7c"; depends=[AnnotationDbi]; }; + pig_db0 = derive2 { name="pig.db0"; version="3.17.0"; sha256="02ngp50g6xrm8vkxrha2bcd6pc9hhcj7zg1bbn4ixd7f3fs81h3y"; depends=[AnnotationDbi]; }; plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; }; plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; }; poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; }; @@ -829,7 +831,7 @@ in with self; { ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bi4wy0sbhsyavxwshxvf3iqmyz26q7y2vqp1h3rjshsjdmhfd0h"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.8.0"; sha256="1m0hd0nlav9dhqzvs5drl8q3llx2wjxdfvb24fmjnba4h769ns7k"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.8.0"; sha256="14hp03pizq7kprwk26s9w6s27zzbs2kk50qhjbiwic1xbrl0dp8a"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rat_db0 = derive2 { name="rat.db0"; version="3.16.0"; sha256="18c7im1l50z7gzj5i9aj3h9pqvnrrazqimigp49nh6ssxlpy51rc"; depends=[AnnotationDbi]; }; + rat_db0 = derive2 { name="rat.db0"; version="3.17.0"; sha256="1znr63swsy2xi60p98g4psrrkj6nvc5a6538w036ccbm745i06nb"; depends=[AnnotationDbi]; }; rat2302_db = derive2 { name="rat2302.db"; version="3.13.0"; sha256="1k2qm1rpq3xkj52m3n629r4qcqi2azdssb2i5shj9jdaqkmr43qc"; depends=[AnnotationDbi org_Rn_eg_db]; }; rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; }; rat2302frmavecs = derive2 { name="rat2302frmavecs"; version="0.99.11"; sha256="0qy5hf86lrkn20yg6d46kcw9fjc0qhsbzbyavaj1v2zl34xvr1ii"; depends=[affy frma]; }; @@ -837,7 +839,7 @@ in with self; { ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; }; rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; }; rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; }; - reactome_db = derive2 { name="reactome.db"; version="1.82.0"; sha256="0l6k7jy0gz8wsv69apw4nk6lbr0ppbfpyjppk81hqn22pzi17w42"; depends=[AnnotationDbi]; }; + reactome_db = derive2 { name="reactome.db"; version="1.84.0"; sha256="0klg4p0n2689fd2ly8i3c7qi353fzlma44hjvarydcxys38k9biy"; depends=[AnnotationDbi]; }; rgu34a_db = derive2 { name="rgu34a.db"; version="3.13.0"; sha256="1nl28gia0zh8xkfv8llxiysxk1k1gm6cs2wvl0n1xqhnr0rhla76"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; }; rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; }; @@ -851,7 +853,7 @@ in with self; { rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rhesus_db0 = derive2 { name="rhesus.db0"; version="3.16.0"; sha256="0zz6aarirvd31x6cnya097ckjvww3g5wx135wg4041f33cqisq55"; depends=[AnnotationDbi]; }; + rhesus_db0 = derive2 { name="rhesus.db0"; version="3.17.0"; sha256="1nmf08xd6nn2cpxmazvxws42ys5y5gacmpx7lpf1y69nvnppaqvp"; depends=[AnnotationDbi]; }; rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; }; rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; }; ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -891,8 +893,8 @@ in with self; { vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; }; wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; }; wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; }; - worm_db0 = derive2 { name="worm.db0"; version="3.16.0"; sha256="06wn3nw6614awmf7z7r2kq02347bbmpq8ydzbpsrfniq14jly6m4"; depends=[AnnotationDbi]; }; - xenopus_db0 = derive2 { name="xenopus.db0"; version="3.16.0"; sha256="146zg2x69m3hzyqbjzadilaqskzfxvjblw0c4pjgv6akf3vi3xn3"; depends=[AnnotationDbi]; }; + worm_db0 = derive2 { name="worm.db0"; version="3.17.0"; sha256="1v54c12lw109afmih9gzm7zdcyd4z18g4zdk1ixy1mbh8ff11w5q"; depends=[AnnotationDbi]; }; + xenopus_db0 = derive2 { name="xenopus.db0"; version="3.17.0"; sha256="0cf8rvvjzm3cd2wrkz6zksqm111yq2li8l9c9p1q566fphvjab34"; depends=[AnnotationDbi]; }; xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; }; xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; }; xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; }; @@ -904,7 +906,7 @@ in with self; { ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; }; ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; }; ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; }; - yeast_db0 = derive2 { name="yeast.db0"; version="3.16.0"; sha256="0ibc6lzax4f3ym049s3cgg0fqhab7vlnk3xs2javvnx2vmizsi54"; depends=[AnnotationDbi]; }; + yeast_db0 = derive2 { name="yeast.db0"; version="3.17.0"; sha256="07rv1fbvj3mmkngmhv258nqg9kba2y8drgkwnzqka6x0m7fbgk3r"; depends=[AnnotationDbi]; }; yeast2_db = derive2 { name="yeast2.db"; version="3.13.0"; sha256="0aqbs3p6f3sc6nyggyk7gvg191b551rwq20009fnk0li50dg1ps6"; depends=[AnnotationDbi org_Sc_sgd_db]; }; yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; }; yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; }; @@ -913,7 +915,7 @@ in with self; { ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; }; ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; }; zebrafish_db = derive2 { name="zebrafish.db"; version="3.13.0"; sha256="13a65jxr3r5qjf82h1dr0k9qq20g14canqgqdd11k9gk5h31xhc7"; depends=[AnnotationDbi org_Dr_eg_db]; }; - zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.16.0"; sha256="186z99zsw023wq8l94l781lh7szrx72bxkg1f0ldq0lz5j3k99cn"; depends=[AnnotationDbi]; }; + zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.17.0"; sha256="0qzywmcmrm7qzxny6icj4y1y4s5ynb169sfmxfy7fqfwnaij6krw"; depends=[AnnotationDbi]; }; zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; }; zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; }; LRBase_Ath_eg_db = derive2 { name="LRBase.Ath.eg.db"; version="2.0.1"; sha256="1f9yp9rfaydzz24bhl795379clcinibi4kavxzzavrvqfvkrgw84"; depends=[LRBaseDbi RSQLite]; broken = true; }; diff --git a/pkgs/development/r-modules/bioc-experiment-packages.nix b/pkgs/development/r-modules/bioc-experiment-packages.nix index e3666e799cc54..23fe0ca0993ae 100644 --- a/pkgs/development/r-modules/bioc-experiment-packages.nix +++ b/pkgs/development/r-modules/bioc-experiment-packages.nix @@ -4,429 +4,436 @@ # Rscript generate-r-packages.R bioc-experiment >new && mv new bioc-experiment-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.16"; }; +let derive2 = derive { biocVersion = "3.17"; }; in with self; { - ALL = derive2 { name="ALL"; version="1.40.0"; sha256="1klf604g4m0g6y12swqz9f8gc20k0c79sxzj7zk6v4jadi1fhsqw"; depends=[Biobase]; }; - ALLMLL = derive2 { name="ALLMLL"; version="1.38.0"; sha256="1r6ny7v9q4h6gx7i28rp9w7a120ln9kd77a4ygiiy92s9d5qi6xn"; depends=[affy]; }; - ARRmData = derive2 { name="ARRmData"; version="1.34.0"; sha256="1c48gfb5h0chfs205hgl5gfb1rlsz355cv5xq0acj9cvzwv25sh6"; depends=[]; }; - ASICSdata = derive2 { name="ASICSdata"; version="1.18.0"; sha256="0s2zfa42yfx5mcbngp979fca6afszxgflrzhn7spry4y071xvkvb"; depends=[]; }; - Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.34.0"; sha256="1bkzak8pwdz23isrfvw71y3y0jbmy11v50wg4z4xhwp0fhfk21fw"; depends=[]; }; - Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.32.0"; sha256="1vvcia75d4n29kph83pi0ihrkjfl2jb46qvwzrhjyccxp1l16bvc"; depends=[]; }; - Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.36.0"; sha256="03dsz3wzxrxykq4km8787n6082i1r140s4afw6r3m29yfk02rqfy"; depends=[]; }; - AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.36.0"; sha256="15dddf2kzcdpvmskszsyxb9i613632d0dfjfv01mlbmvd4q0h20s"; depends=[]; }; - Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.36.0"; sha256="125firpilbi9xlb61cp641g972cwqd23p9vrpczicjw6dm6mh5km"; depends=[]; }; - AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.38.0"; sha256="0v2r91h6ydzyrcn4ryhrd5q0p5dlq6w1alcfbbk43nvmjqidm2r3"; depends=[affy]; }; - AneuFinderData = derive2 { name="AneuFinderData"; version="1.26.0"; sha256="01g4g0sz46psi86792fqyazr6vzbcrcrhzw2k9k94cawppnlfnwh"; depends=[]; }; - AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.28.0"; sha256="109qzyjhvmpm0q6ghfvsmrrskvjd6djlki7kn63jfsfqphx1v7db"; depends=[]; }; - AssessORFData = derive2 { name="AssessORFData"; version="1.16.0"; sha256="092f1nivs9xvibbs380ahwfx3f7msnbbb62bj94ihs2swsq7b1y8"; depends=[DECIPHER]; }; - BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.36.0"; sha256="079qj26622s9jb2kw1wpd5bjihmj3a9mif4y86zjna7jm1jdvzv8"; depends=[beadarray GEOquery limma]; }; - BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.6.0"; sha256="0mh10sg95djkzp9w7bjr4ggy86a0pakfi2008fk4xikjc3q7ky24"; depends=[ExperimentHub minfi]; }; - BioImageDbs = derive2 { name="BioImageDbs"; version="1.6.0"; sha256="0r4m5qchzglpx4dn95ss0xfd3cqd7vxafjg869y8fxpayjn11dqg"; depends=[animation AnnotationHub EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; - BioPlex = derive2 { name="BioPlex"; version="1.4.3"; sha256="01kal3fg1ii6cx33ccar3aaq36a11irg1ac8fcanm5xr4lhsf8v8"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; }; - BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.18.0"; sha256="1284qhij9663b382aq4nq3zl3jjsj5gdh3bfqj6sjfvbvx4pmcpg"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; - CCl4 = derive2 { name="CCl4"; version="1.36.0"; sha256="09zja5jzz7lh11cyjvczfgic8z4bq35j6f63irwwizxvp861w902"; depends=[Biobase limma]; }; - CLL = derive2 { name="CLL"; version="1.38.0"; sha256="109sspddzqg08gqf5xacf2vbjs672i2d3n6a6wzr8isdyar40xx1"; depends=[affy Biobase]; }; - CLLmethylation = derive2 { name="CLLmethylation"; version="1.18.0"; sha256="0xagl4f5cn9wax4jjh4csfd4p53ljnh09b063rk8dqm7adr2c788"; depends=[ExperimentHub SummarizedExperiment]; }; - COHCAPanno = derive2 { name="COHCAPanno"; version="1.34.0"; sha256="0fps1b4kfhv4n1gm3yqspjbrh6gnq8hl1q2apzb1ir1gnfm28ird"; depends=[]; }; - CONFESSdata = derive2 { name="CONFESSdata"; version="1.26.0"; sha256="03dyzdj79377srmcxh3fc0z321g3mkcp88lknwndw1xa44n2hqd5"; depends=[]; }; - COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.34.0"; sha256="05m5288ilcisifnhkq6vdgrchhkp21nc8kmdm7kdszl9d4xrj7mq"; depends=[]; }; - COSMIC_67 = derive2 { name="COSMIC.67"; version="1.34.0"; sha256="0ga0islkm9m4qry37qkw8z0zs7amqky7fy0i418k9gn0ba06xd0s"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; - CRCL18 = derive2 { name="CRCL18"; version="1.18.0"; sha256="0515xmrbhvkw8zk62ivyzlr8p0mmmqbayy73vdwzz3a5gd3zh7zl"; depends=[Biobase]; }; - CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.30.0"; sha256="17hwxp251ghwmlywa7rxvlj0m3fqdf3pm57m0rfxnda0izx6xvk2"; depends=[Cardinal]; }; - CellMapperData = derive2 { name="CellMapperData"; version="1.24.0"; sha256="192jaz5fss0bz64jn52c7lnj81ih89dhrz6pjkyllsh8ffvqb067"; depends=[CellMapper ExperimentHub]; }; - ChAMPdata = derive2 { name="ChAMPdata"; version="2.30.0"; sha256="0rz762szfl02h4d3dj7ckd41ji9mdsja8nxqw6fl086z337041zw"; depends=[BiocGenerics GenomicRanges]; }; - ChIC_data = derive2 { name="ChIC.data"; version="1.18.0"; sha256="1ii43y280mqb0csa3g7xrw3aj1lsl4rk1hnakg27jnjk7c36jg0c"; depends=[caret genomeIntervals randomForest]; }; - ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.36.0"; sha256="049y1mvf7d1ajqnk1hs72ak41j16dz2zhsmq3b6817a4frrnmb0a"; depends=[bigmemory]; }; - ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.22.0"; sha256="1jgvf953b3pmkri02avajmqx7p0ylljdl4v2qiwvxi0gxzlb2qwn"; depends=[]; }; - ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.36.0"; sha256="1jlm1l5vkk18r0y5jk0rz8a30f71cpzq5wimff4xnka30zkk83r9"; depends=[affy hexbin limma qvalue statmod]; }; - CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.14.0"; sha256="0qnhs5kvf9a1vsg1y4ky6cb0awnf9fj6n4n37yz9ss7dl3rpn3qk"; depends=[]; }; - ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.34.0"; sha256="0f7spc4l9y8hrv6fscgxj9fy9hnqm9h8r4nya97jzbwryj9yzm2s"; depends=[]; }; - CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.16.0"; sha256="0s3fp0pblwpf8g1ply64n9kq41mn59gyf1wh9lncks8sfxdk1h0a"; depends=[ExperimentHub Rdpack]; }; - CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.30.0"; sha256="19yqcvfji8263wdcqmjbmmz2xzi0nl9d4jdwsqrvv6ja5pqm2l7w"; depends=[]; }; - DAPARdata = derive2 { name="DAPARdata"; version="1.28.0"; sha256="0ix3z12g2xff16bkiynly8y75ygrapv65p1ml9z7p4ap04rd718v"; depends=[MSnbase]; }; - DExMAdata = derive2 { name="DExMAdata"; version="1.6.0"; sha256="16k017y3bf0z3h05gldb611hl10vqllyl5346nnpmw8pqihcq5by"; depends=[Biobase]; }; - DLBCL = derive2 { name="DLBCL"; version="1.38.0"; sha256="1adzmfk67xl3lqlhkbb6r2kkprkbjwb6n77ynj4mx6gi4b3s8b2n"; depends=[Biobase]; }; - DMRcatedata = derive2 { name="DMRcatedata"; version="2.16.0"; sha256="1p67kw8l8367rkn72wjlsdc4gw1cbpi8w928dmpa1x833ypfpkc6"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; - DeSousa2013 = derive2 { name="DeSousa2013"; version="1.34.0"; sha256="0zk9z0bmn15wsrscdh30cxps1c5qi06xhzbvl8v2lals6hxqgixz"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; - DmelSGI = derive2 { name="DmelSGI"; version="1.30.0"; sha256="1isn7ay22dpvnsdjlmanfj7pdqnim4dcrq2rf8dflydgjq6hc06k"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; - DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.36.0"; sha256="1xq303q0wmrk73band29yfpb8dacg6187qxpr3pqacksj3dsp70m"; depends=[EBImage]; }; - DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.8.0"; sha256="1yzq3yddqv06j1j3wpw92ydsgi2k67dirvjn7127iwpp865hs12r"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; - DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.34.0"; sha256="1j8mnkk71w2wp18wp65z2rwj4ql5s6pqggv2rd02l0jq9n89w8wl"; depends=[]; }; - DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.16.0"; sha256="0dha80wlb9w1brq22lfmcm267axkm56pwfxcd1szbsg3w2fv3wrn"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; - DvDdata = derive2 { name="DvDdata"; version="1.34.0"; sha256="1x22s36aq8ppyphc58gsd5s7chkkkf6dhand39c8b9npybx9rx8d"; depends=[]; }; - EGSEAdata = derive2 { name="EGSEAdata"; version="1.26.0"; sha256="0df556k4wbwmn8cjpfq38c3mxicncz2j4f9f7xxsj5gjd2ww2p2r"; depends=[]; }; - ELMER_data = derive2 { name="ELMER.data"; version="2.22.0"; sha256="1603g55jkdq3f66xp84cj7x3f7bgw2s4bhscyjvb1hagcnwg48lf"; depends=[GenomicRanges]; }; - EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.36.0"; sha256="1bpm8ds36iydbd4nv5ifrp8spdlx21k14dx18awm61d9wzg6fk1p"; depends=[GenomicRanges rtracklayer ShortRead]; }; - EpiMix_data = derive2 { name="EpiMix.data"; version="1.0.0"; sha256="1n65fyq8syiaix876ll1zjjx5cm9k63p92x9by6xbpv1xqmqbpzz"; depends=[ExperimentHub]; }; - FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.34.0"; sha256="06fqm4rj5c6l1aynvz3xqv9lk8w1s57m9ncfb2729sgyp7zg64pp"; depends=[]; }; - FIs = derive2 { name="FIs"; version="1.26.0"; sha256="13f8q3gjgbbycp6g81jr5aq5w759mhs4niacqbzmfa5bksvsmlmn"; depends=[]; }; - FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.8.0"; sha256="0bcsvgjr03z5r2xxlzrzcpqw0vqh0vfghrwlsismxp8dp46kjr25"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; - Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.34.0"; sha256="1dgqhgmzhfnwyjr1wcz41ggri8i63d9b4malr1izd8gnh9c80an3"; depends=[Biobase gplots limma VennDiagram]; }; - Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.34.0"; sha256="1hhsyk98q23j2d5y4l4kj15vypms9yn7skw3wcxmwl95cgdwzb9s"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; - FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.36.0"; sha256="1ha9qsp5g3g2yhnk574x6xhg95bb29ywvmg3ns1c50z69v6wbraq"; depends=[minfi]; }; - FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="2.2.0"; sha256="1vybj69jxnirqg6ik03q3pb1vv23z8mir7wpi2ys7iljf5ixzgl1"; depends=[AnnotationHub ExperimentHub genefilter minfi nlme quadprog S4Vectors SummarizedExperiment]; }; - FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.26.0"; sha256="08wyfv2z8xcmany5m9lpz3lv7ql4qq95vb14fvq7bmhy1ahbr9by"; depends=[minfi]; }; - FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.14.0"; sha256="062dk56shf41qdd4wm8g8vgbcg1bpj24v9x7q4kvb2cmcqyr233s"; depends=[AnnotationHub ExperimentHub IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; - FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.24.0"; sha256="0c6v5cxw3xy0zlw3dlfx5gwijlkwmq4m2irg04j9fng90zm2kmh2"; depends=[minfi]; }; - FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.34.0"; sha256="0nchavb8jwkp7jpf5nkfdzavjqjsr7d9g3cll7w2zczgz00ysfij"; depends=[minfi]; }; - GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.16.0"; sha256="0ryrsmjsvv02p9zrcw6h45c8hrq6pvg3r18j3jbcsz069awsy9ik"; depends=[]; }; - GSBenchMark = derive2 { name="GSBenchMark"; version="1.18.0"; sha256="0n1ag0a34hfrfrnnzdd6n2dk05hxrpgr9mfnxlnyffcn36fv7fwv"; depends=[]; }; - GSE103322 = derive2 { name="GSE103322"; version="1.4.0"; sha256="148p24hh7j07ny2jxwnvk5lq6313xmaqmn80amv1qvf78wfnf3bf"; depends=[Biobase GEOquery]; }; - GSE13015 = derive2 { name="GSE13015"; version="1.6.0"; sha256="1r3w675f53n0z6ii6xlsahyg33mc0zmcsirgp2nb4ab6r22y36sa"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; }; - GSE159526 = derive2 { name="GSE159526"; version="1.4.0"; sha256="125q8bl3qaf8lnadqh96g651y8ydkcsg8szcni1rjsnw6hhqasxm"; depends=[]; }; - GSE62944 = derive2 { name="GSE62944"; version="1.26.0"; sha256="1d3zyyir01i4isqbk1sjy1d0jkrjqiyciyqqklhigk1jyk4irpvj"; depends=[Biobase GEOquery]; }; - GSVAdata = derive2 { name="GSVAdata"; version="1.34.0"; sha256="009y1ywfb11d9yrqnknjgynpm732fixrg8xk49ggf1m0r8qd7p0k"; depends=[Biobase GSEABase hgu95a_db]; }; - GWASdata = derive2 { name="GWASdata"; version="1.36.0"; sha256="0nibj1n8gqzrrfpggryfl80zk68hf3a3n4ndjqi9rnn5kl9aw5b6"; depends=[GWASTools]; }; - GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.6.0"; sha256="1ascrsvildfcp4kqzy9zdx97dyqkdl8nhkv356sqy6scd4fdjknf"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; - GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.26.0"; sha256="0mkzaqsqqyn9d4z3cgr10csimqklxqvymsjphn05m8d5dhfzcwn7"; depends=[]; }; - HCAData = derive2 { name="HCAData"; version="1.14.0"; sha256="14734jlxq0l3l3187frw40qfsgx7cv04hxl772wvaahnd8wmga9z"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - HD2013SGI = derive2 { name="HD2013SGI"; version="1.38.0"; sha256="0i2sv80qw3svk8kl8yrg4n6mxjw589fz0kpqn9hbaj07z57g7rb5"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; - HDCytoData = derive2 { name="HDCytoData"; version="1.18.0"; sha256="1fn8q6ds10z3ymdarkfyh88pcqnrry9yhzammp84vf86f0bl8mrc"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; - HEEBOdata = derive2 { name="HEEBOdata"; version="1.36.0"; sha256="1jm0i9d6vwbhp7xxy571n0c4gc8zga0vividkkk5wkr3mzc00qm6"; depends=[]; }; - HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.38.0"; sha256="0yf0xwkjhb6inxpxy2r258zkqmx286v7d0hcrp9s2jy1jxsvzyrg"; depends=[]; }; - HMP16SData = derive2 { name="HMP16SData"; version="1.18.0"; sha256="1zp5s3c95nkq4ngm6v96wah4h1y47pgwxpg1x8w0ysjiswjag74f"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; - HMP2Data = derive2 { name="HMP2Data"; version="1.12.0"; sha256="1m57kd35m7j8jvai5lh252433s14fn181vpm4bz38wqh4dj41qhs"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; - HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.18.0"; sha256="0ir4vd88p0pfh4sbsks65dijxadxj2xdc5rrjznvchj39ia48lp9"; depends=[]; }; - HarmanData = derive2 { name="HarmanData"; version="1.26.0"; sha256="17gl8j02gnninbq386b7jmbnai77hg3w78lvikcm1450mlk1vkk3"; depends=[]; }; - HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.20.0"; sha256="07gh5gfzprdvv0cif999k2v8rijhjqsyw6yrmn6mf2hyf7hc09r1"; depends=[ExperimentHub]; }; - HelloRangesData = derive2 { name="HelloRangesData"; version="1.24.0"; sha256="01mdjz9l6fnzd4yz31xyhraqczd64dsay37pqmc1w9kd9934sfrm"; depends=[]; }; - HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.18.0"; sha256="0l9v1hycb47cjmk1k1b8vvry7amqgl74l72qigznx9h64dl0vqpc"; depends=[]; }; - HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.34.0"; sha256="1il9j759bw6h84v9ap1wf5fvn4i34nhdn0rb9flls1xbrmi1bsl6"; depends=[]; }; - HiContactsData = derive2 { name="HiContactsData"; version="1.0.0"; sha256="1hp46qr1abllmqqimgk8lp2fb7mfb9zc9kqcfzc8fx7jbyxsqj7q"; depends=[AnnotationHub BiocFileCache ExperimentHub]; }; - HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.10.0"; sha256="1v6qd15k36ynmy45kd5rg7rfs9xp054jgbwksxc0hz3v50nqjl6w"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; - Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.34.0"; sha256="0a87ldx5hwlvk64ynd4jm0mf3sbn2yxq2d87c9gwpcc471jglqn6"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; - HumanAffyData = derive2 { name="HumanAffyData"; version="1.24.0"; sha256="0sbxl4jh697220888ssi825iiakzj94m4k871lg42xn22d7991wc"; depends=[Biobase ExperimentHub]; }; - IHWpaper = derive2 { name="IHWpaper"; version="1.26.0"; sha256="01p50lcybzr8bk7hdzmi71bwwy51xan5wba2ppis6z68gjvyn4hf"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; - ITALICSData = derive2 { name="ITALICSData"; version="2.36.0"; sha256="09d2igic3b5p7wpq98hb2lffxm1nfq9mwmnqlbdn3jv49pgz3hmw"; depends=[]; }; - Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.34.0"; sha256="1c1iqxi17s1a1sa1vab2ma7pjq1dxal7ibsiahj66ys0pa4sm42p"; depends=[]; }; - IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.36.0"; sha256="0xsnp9bxsmsrqnlshd0g8smqmianlna8vapln96ix47mjj0hcq9c"; depends=[]; }; - Iyer517 = derive2 { name="Iyer517"; version="1.40.0"; sha256="0y8a5rsnk0m6x4sfp8fnc7c54fv3pwsps19h4hfs0qxzvxzzjrf3"; depends=[Biobase]; }; - JASPAR2014 = derive2 { name="JASPAR2014"; version="1.34.0"; sha256="0g95w9fk7rjn39xqcpyxx87mzizrkmpmrh76msgkmwpmdvjz6hkh"; depends=[Biostrings]; }; - JASPAR2016 = derive2 { name="JASPAR2016"; version="1.26.0"; sha256="1y60fslisdxwm27g0sjzjg6r5qf8bjp4hyb1k2plxpdarvl7jzqf"; depends=[]; }; - KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.18.0"; sha256="0x582iygpw580i8afdxw41jn7gv6mp0hcy9mx8n75nkknvzs4w0g"; depends=[Biobase BiocGenerics]; }; - KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.36.0"; sha256="09syk5d39blzzi1z8l8w1ia8ahrxhrwync7kmlwnvssbd5q1q0rd"; depends=[Biobase BiocGenerics]; }; - KOdata = derive2 { name="KOdata"; version="1.24.0"; sha256="1kclj56823bc9mn8r3khwfwak342ja69afcmllfg2cfr4al6ikgh"; depends=[]; }; - LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.6.0"; sha256="0r0p7v482d9r06cwgqy23la238dff9ga70iap7wyhn8xdfcp7rfm"; depends=[ExperimentHub]; }; - LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.36.0"; sha256="03vgrpgw3sqfrvbgm7r6avwkl85qmxl4fy0r92ikh8wr6waw7a62"; depends=[IRanges KernSmooth]; }; - ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.30.0"; sha256="1733sz2qhkrvalx0vk7xa2plddz40psfmnfpq3zkf6v4i1cvnvmx"; depends=[methylPipe]; }; - LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.34.0"; sha256="10fbjpk50nqpm91r9fw94q8dqcz1jg4smbjjx2nbwvl1qzzr1qpj"; depends=[]; }; - LungCancerLines = derive2 { name="LungCancerLines"; version="0.36.0"; sha256="053zb04n45mypnaws2g4id6pzlbmgdzwrg7x3i6gcw566vdai82n"; depends=[Rsamtools]; }; - M3DExampleData = derive2 { name="M3DExampleData"; version="1.24.0"; sha256="0cmgb0qx78awjx6gcf5nyd7am0p86ga9l7ps8h8z9llr0d0yr0hc"; depends=[]; }; - MACSdata = derive2 { name="MACSdata"; version="1.6.0"; sha256="04pimm8g4m2mahrpdwc45l1cnsg8h0737qh932k9g9740pmhv1pd"; depends=[]; }; - MAQCsubset = derive2 { name="MAQCsubset"; version="1.36.0"; sha256="0k40plz86v4bwcwny0zd3icq4zjqfglbnrk957bvbsgacjag87cq"; depends=[affy Biobase lumi]; }; - MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.36.0"; sha256="1vr0avq39p8hg5zzx6fy1n9p4anvlcjbngkhiq6nprmp2s8064vg"; depends=[Biobase lumi]; }; - MEDIPSData = derive2 { name="MEDIPSData"; version="1.34.0"; sha256="1h9dhirmq30j9jds21f1a3jvijy9z0mp9j08phd79sallkcvsqna"; depends=[]; }; - MEEBOdata = derive2 { name="MEEBOdata"; version="1.36.0"; sha256="0klm6xv25g3x7yf814l1jbi16cknb2xbh6yn1cx9a0p3rgm49j1l"; depends=[]; }; - MIGSAdata = derive2 { name="MIGSAdata"; version="1.22.0"; sha256="01sz73h1xkqck6d0yliy2i4nx0v980bxm30y7rn6g3nxw9qs5q1m"; depends=[]; }; - MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.12.0"; sha256="1k5ay043ys2npmmb2mk01cpdxvl1ccysl5bw5aj9d2h7mixxfc27"; depends=[Rsamtools]; }; - MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.34.0"; sha256="0hnvjsbj6iaaaqslgfnqzlk59q6fmyzsjbscqvl2pfdiliy2mkix"; depends=[]; }; - MOFAdata = derive2 { name="MOFAdata"; version="1.14.0"; sha256="141rvb3ra457hgc8hhskc4j6xl6k7f13amrlrw5nvx4n77wfsv8b"; depends=[]; }; - MSMB = derive2 { name="MSMB"; version="1.16.0"; sha256="0rz9cvpsnq0lnbahnpsbdxwcvh6z7id3lrzcr2bcxvnkj4ah95q4"; depends=[tibble]; }; - MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.18.0"; sha256="1f2zsy950rn437cgqpai5nlchpza100sf2acqdq8cyqiq4ip7q8j"; depends=[]; }; - MerfishData = derive2 { name="MerfishData"; version="1.0.0"; sha256="0jcq6n0x57i11c793alj3kj813vs37fmi01z5yl1lsx41cgflpll"; depends=[AnnotationHub BumpyMatrix EBImage ExperimentHub S4Vectors SpatialExperiment SummarizedExperiment]; }; - MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.18.0"; sha256="0wjgk3j9r6shk7ava3isdyiihdf7b9dz701jkv3nhg87x3nhvwfh"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; - MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.18.0"; sha256="0miznxb2d7smfzcyddhx64lip9xxn4bcq7x2f9fn9047qfky0w9i"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; - MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.18.0"; sha256="1icm9y4x2qglp9gy66j71ngn61snbxy3gz3m6mdgj2vw02f93xif"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; - MethylAidData = derive2 { name="MethylAidData"; version="1.30.0"; sha256="0j53ilxqvl7gaplkmrslz1ywm3fybqyri2psdr5c34kay7j50sng"; depends=[MethylAid]; }; - MethylSeqData = derive2 { name="MethylSeqData"; version="1.8.0"; sha256="0rfl5xz23kbvjxf2sf25j526a8252dvd6zmg4x9pj7fqyf7yvfdd"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; - MicrobiomeBenchmarkData = derive2 { name="MicrobiomeBenchmarkData"; version="1.0.0"; sha256="06m0yi3379g8kvhs0amcc9r5d0np9xwq2a85vk8iz3xi6sqbbbzj"; depends=[ape BiocFileCache S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; - MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.12.0"; sha256="0icgs53mfaiary8gjifasjalc9942fr876w61bxssdg7v4jn76ss"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.6.1"; sha256="11hs19zcpa8bfmidm7v9hll735c6waq37s879mwz4wgxw9ysk1nl"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; }; - NCIgraphData = derive2 { name="NCIgraphData"; version="1.34.0"; sha256="0sismlawhq1dz29v1532x5ha1n2pdv2fa43kzma4xdf1vafj5ham"; depends=[]; }; - NGScopyData = derive2 { name="NGScopyData"; version="1.18.0"; sha256="1w3hpmqf6030smwb4r61czwz0qsr2kz8z11q8z8819bj0czvr32x"; depends=[]; }; - NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.8.0"; sha256="0k548ib7yi29xcs2c0y46c3vwi6fkqsp3njwbn4acm85pr93z54g"; depends=[ExperimentHub]; }; - NestLink = derive2 { name="NestLink"; version="1.14.0"; sha256="0qk0c506j2gwp25hyqriii7cwh1h2rbvhahm1akxvr4j1v2pk01l"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; - NetActivityData = derive2 { name="NetActivityData"; version="1.0.0"; sha256="12h25q7vp23rac1d3lgf99fclj2h3615bkxfhy117971i4n2z4i4"; depends=[]; }; - Neve2006 = derive2 { name="Neve2006"; version="0.36.0"; sha256="0i7l60ys7mnqllx30r6g8jif460z90j8cw59jv13hbym5dhdk4bi"; depends=[annotate Biobase hgu133a_db]; }; - NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.4.0"; sha256="1k0krkmp13l9w6jwidc1snm5z11g3wgw2pmp9jzsxyxjimha0vh2"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; }; - OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.16.0"; sha256="16jyvgj9rcinsjixczwq6rw8wpl0lxyf7h5sajf47306nxx5w073"; depends=[MultiAssayExperiment]; }; - ObMiTi = derive2 { name="ObMiTi"; version="1.6.0"; sha256="04hcr5ng7gqz6200zvdkfgrw1j3zkvqqh6yn5zsf9q2vwxibxyz5"; depends=[ExperimentHub SummarizedExperiment]; }; - OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.20.0"; sha256="1338j9fqcizrfnx7wi97qpsa14yyzy34hb11q3017ry1hkhy28qd"; depends=[rJava]; }; - PCHiCdata = derive2 { name="PCHiCdata"; version="1.26.0"; sha256="10nlrqsxv655d489fy1vchgi4iw3pfxr6xwhylgcj94nigfy632y"; depends=[Chicago]; }; - PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.38.0"; sha256="1wmvx2vp8yfz4mx4gmcgvisxp5cn0cf3pznxh01gwiaydpafiskr"; depends=[affy annotate Biobase PREDA]; }; - PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.32.0"; sha256="1bikxs5h6wl8l3l6avgh42h3d8yz1b98s15fggl62gkncaygqfr7"; depends=[PWMEnrich]; }; - PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.32.0"; sha256="0ckvjrzr7hqr7lls7z8pdg58k0xpm7hnk8dl2vfy03ddgl7ma34v"; depends=[PWMEnrich]; }; - PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.32.0"; sha256="1hwlwkmvkf9q3vi9c7ipr3h6hfrda5xm6gbzv03bmc3pcwwqa2j9"; depends=[PWMEnrich]; }; - PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.26.0"; sha256="0mhb68rm3dmzdpm7x0ffyz9a44fidgr1gxpnwxppslklrnm7g24q"; depends=[]; }; - PathNetData = derive2 { name="PathNetData"; version="1.34.0"; sha256="131d10id8b93hd7g0z3rl4z8cvv5h5gdi3x636b2z2is821jvnbr"; depends=[]; }; - PepsNMRData = derive2 { name="PepsNMRData"; version="1.16.0"; sha256="13n9calm3k480sxcgqhvw519m1ss51ysiin7cxhipjfjf8fdnbkb"; depends=[]; }; - PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.12.0"; sha256="1kpg1a2p6cb4xa7ynlr3wmx7hx1l2xhxccbyqd8mnwn0r52njwmw"; depends=[BiocStyle Biostrings ExperimentHub]; }; - ProData = derive2 { name="ProData"; version="1.36.0"; sha256="06bmlgwyw4m7cirlvhvsl9qhmczv8rv0aj5ckickwzdcxyig9bjw"; depends=[Biobase]; }; - PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.24.0"; sha256="076q31wxfrxbgyhp4m0d7rxfpi3vvh9950lhcadf92mz6rc39hi0"; depends=[CAMERA LOBSTAHS xcms]; }; - QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.28.0"; sha256="0mszcm31wvzz4sd9909x3ngbd0gdg7iyyxqwmn6ish8f3aj7b5zg"; depends=[QDNAseq]; }; - QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.28.0"; sha256="19i559hx0lbn3m0ihx4wxl8zwskbfwhyzywl8aan165f7snj8has"; depends=[QDNAseq]; }; - QUBICdata = derive2 { name="QUBICdata"; version="1.26.0"; sha256="1ibffdqc2szj48g6a9ysqwr499bfx706ki0436jwcyxgql2rwbi3"; depends=[]; }; - RGMQLlib = derive2 { name="RGMQLlib"; version="1.18.0"; sha256="0jsmqibzlclxg4sa73wk63z9l798g1hjl1amjpjy1xb1mn585bhc"; depends=[]; }; - RITANdata = derive2 { name="RITANdata"; version="1.22.0"; sha256="0wx5i8i5aq6zqrr134fl42a0a97zgrjkmwqh3n2ds5bdn5iylk4g"; depends=[]; }; - RLHub = derive2 { name="RLHub"; version="1.4.0"; sha256="1gdlg3sfpf2dpkxiaq0m2mmkpyj7v3jqb9paq6ii89l0df2rmrlb"; depends=[AnnotationHub ExperimentHub]; }; - RMassBankData = derive2 { name="RMassBankData"; version="1.36.0"; sha256="0hkg0w2d8r2r661a7jrpki79ycxnibqwghra4aql9dxqvwrz5qxi"; depends=[]; }; - RNASeqRData = derive2 { name="RNASeqRData"; version="1.16.0"; sha256="17c5fvyqxdsg7wl0hy0i28z0kf2lmjg36lfrmsv51kzklsc6ykrp"; depends=[]; }; - RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.36.0"; sha256="1fpcaqvffb4qrcqs1flvhjggycdxcy93jbj3x5196kz4h9i23fvk"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; - RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.12.0"; sha256="1qb753pa6vz4m98s5bqjan70ygqdg4v8jkz440hdq20m2fl54k8w"; depends=[ExperimentHub ExperimentHubData]; }; - RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.36.0"; sha256="1w1af68xbpwqmpvvsd1i7jhs4vpxsbn3x277dgg7lgf9gwzsac50"; depends=[]; }; - RRBSdata = derive2 { name="RRBSdata"; version="1.18.0"; sha256="02j98pnn8pprrx7y1038w5gzb9cw2wf96vryjp17w92k5shv0v5j"; depends=[BiSeq]; }; - RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.26.0"; sha256="0va9ijh2f10c24z0am0rhsdxy0s35cmbsyxfrsysdn56vlz4hprl"; depends=[RTCGA]; }; - RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.26.0"; sha256="0ha4pz9a85jm74yhp5hylgcs3xkcv81b3h5svcrpzwgz4bb34cny"; depends=[RTCGA]; }; - RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.26.0"; sha256="1h0438li369ziwdjvdvyzfnsxrp8sf28xxkxywivy8ihkcq28pxy"; depends=[RTCGA]; }; - RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.28.0"; sha256="03qp4h7vks5dra741f795i5pjryh5x2313xx7zy7fz996sd1q7q7"; depends=[RTCGA]; }; - RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.26.0"; sha256="1srd8aswa4sgm9k1w0ymd7vcvwlkhb8i075yyh7zs4a4w1jwavh4"; depends=[RTCGA]; }; - RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.26.0"; sha256="0ncgzr3z0yi613ryz2w8lgmyrkzigzfgc6w6jrdgxik3yvkl6b13"; depends=[RTCGA]; }; - RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.26.0"; sha256="0rslg5pmnk5dllvahfjrira8mxg7pfaimnqci3jsi78qqb7wdgfi"; depends=[RTCGA]; }; - RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.28.0"; sha256="089zy9bmwmwmihldgcw423sngjwq0vrx7bazrm3xl2psvcfday0g"; depends=[RTCGA]; }; - RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.28.0"; sha256="0q5k6g944xzlhivwzni7azw44rvahz7hgc9bkbbx17dpgz0nkl6y"; depends=[RTCGA]; }; - RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.18.0"; sha256="0l7cv7za7jknwa3jw3110jba31hmsf5wf0sys5kbg1jgkvv0g7ci"; depends=[Biobase]; }; - RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.18.0"; sha256="1qld3cm8qhfxh7p5j0g2iq6i1bxcyhs88222sqyjqjl6i0z01wdf"; depends=[data_table]; }; - ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.12.0"; sha256="1vm6s3n4v4ar3znlg4qlsllddp24wamz53qnmf6ay09wq0wyy9yv"; depends=[edgeR limma ReactomeGSA Seurat]; }; - RegParallel = derive2 { name="RegParallel"; version="1.16.0"; sha256="04qrk7x5b3g4r2j63w0cc2qbxqcljfkjv4qrdg0qmbn3p4gi5nqv"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; - RforProteomics = derive2 { name="RforProteomics"; version="1.35.1"; sha256="1igdx4idgk1j0mcs8zjzd6bppj4nadryxhw2q026hazx6kj5qbxh"; depends=[BiocManager biocViews MSnbase R_utils]; }; - RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.30.0"; sha256="00aymammhqndzwfrb1c9lkpzsia20jqx7pysl3s80nbxga7rc2nj"; depends=[GenomicRanges]; }; - RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.30.0"; sha256="0fayz3kp02lshc42r27jwa7qd8yq6qb5g0kp1lbak062l8mzzjdp"; depends=[GenomicRanges]; }; - RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.6.0"; sha256="0wd55fkdjl1kdchadkd6npz7fmpbacs8mz9phnw7l12nn2qd4mdn"; depends=[GenomicRanges]; }; - RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.30.0"; sha256="17s3dpwhdv24fzk1x7ppyj63rg4rajz564dqplga9445rjb00dzd"; depends=[GenomicRanges]; }; - RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.30.0"; sha256="149i8l5fv0c2z467bacq8lr7ff5jibd2zxxw1p7icbq4k31bcap9"; depends=[GenomicRanges]; }; - RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.30.0"; sha256="07zpwv4s8idgmjy87bpvjq0f0zvgmra7g31kghilslxiq5ywydw8"; depends=[edgeR]; }; - SBGNview_data = derive2 { name="SBGNview.data"; version="1.12.0"; sha256="1a541w5xik81ln571dg3r4iiwprk4xzl95diqqxq2qyivvj6v66w"; depends=[bookdown knitr rmarkdown]; }; - SCATEData = derive2 { name="SCATEData"; version="1.8.0"; sha256="05q33yxj99g0xbha3a7qibpcp33y98p6242lsl3my6p48fby7rh7"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; }; - SCLCBam = derive2 { name="SCLCBam"; version="1.30.0"; sha256="0969p97x5w7vwaq51bjcdclz40k9yphlr66l92rnvcl3wqbvrs0i"; depends=[]; }; - SFEData = derive2 { name="SFEData"; version="1.0.2"; sha256="1kan3yii88rz9bb3rqgrcvc30pkvrjywhwfax7q51rsz71wvb52i"; depends=[AnnotationHub BiocFileCache ExperimentHub]; }; - SNAData = derive2 { name="SNAData"; version="1.44.0"; sha256="133d7ky4sv7msyxxqja6rnf66c1yphx7zh0xzjf6gni4r09a7jp9"; depends=[graph]; }; - SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.34.0"; sha256="02an8d31yd7ryvpy2ldlf52gsyql1waz0qh8d3xsx96p9cg9il2y"; depends=[]; }; - SNPhoodData = derive2 { name="SNPhoodData"; version="1.28.0"; sha256="0668whnkan61jxxi9iykaz1ny0929vnbhb27p7qngc5m92l1zja9"; depends=[]; }; - STexampleData = derive2 { name="STexampleData"; version="1.6.0"; sha256="0mmc41px0yz7mij6gdnjcf8vifwk8p03jy7b5lvylfggbfng579z"; depends=[ExperimentHub SpatialExperiment]; }; - SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.30.0"; sha256="1rjkm6sdhwn4nhswqv5jhlqz4002grslz97lcp5k9i5bsl9yy5lf"; depends=[]; }; - SimBenchData = derive2 { name="SimBenchData"; version="1.6.0"; sha256="0jb82fb9mqiqh9b4nn2cryylzgk5g9yibcyin8wydmv4sk8xxm5w"; depends=[ExperimentHub S4Vectors]; }; - Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.26.0"; sha256="1r4sal6cv91lp4sjxqqg291x1jv16iq0wi34wm0r0mjnfycw6x6n"; depends=[]; }; - SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.10.0"; sha256="0mjy130147sg1jp45niydrsinnxn6i9v4jjmlanwyf1kghl4hx7y"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.6.0"; sha256="0mq5y03yzpxdhhlws9y3g9mz0kr3q3g38a566cvp18mmhxp3414k"; depends=[ExperimentHub]; }; - SomatiCAData = derive2 { name="SomatiCAData"; version="1.36.0"; sha256="1sshapw93rbiqn9i3rg3xls7836hvg87qsl7awp17gzqlqap4331"; depends=[]; }; - SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.34.0"; sha256="1zahhn2b10187hbljp9nppvr94iz067yasfgxalkhkxl09pdpksx"; depends=[GenomicRanges IRanges S4Vectors]; }; - SpikeIn = derive2 { name="SpikeIn"; version="1.40.0"; sha256="0r0lgzr0wrfvhl4fs4w5qcj0ykmngfrn341jgrxh13wn1cdk9yk9"; depends=[affy]; }; - SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.38.0"; sha256="0546mwyacdhcgglfgqkq2c02nzvq1a8pkybggnlvyz1bhrrg51ay"; depends=[affy Biobase]; }; - TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.34.0"; sha256="0na9f3i33h33xpbybgmxwf00mdvyvmgyfvpbj813wcrlp0m2zzhm"; depends=[Rsamtools xtable]; }; - TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.34.0"; sha256="19y43lxmzhly8q3xszlkz7l5v76agyflcjvz0z7bliri1hpxx6bk"; depends=[]; }; - TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.22.0"; sha256="02w9blh9igpflvjmfcxmnw5czjjlmh92ks1y0jhx72fz5g13mq3a"; depends=[SummarizedExperiment]; }; - TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.18.0"; sha256="0q1h4z1x47x5y618j4z2zp4lfhm85s0240nmzi8l8129sqfmb9m5"; depends=[]; }; - TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.18.0"; sha256="14qxsi6mn83c02mhvzs2qss59a8ld1vc94kmy03c9l3p5jcb9352"; depends=[Biobase]; }; - TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.18.0"; sha256="0fx3vxyc89gr2k3wnx5wlqxi6ml45hyijwbf5f7crijzh6avwhbh"; depends=[Biobase]; }; - TENxBUSData = derive2 { name="TENxBUSData"; version="1.12.0"; sha256="0zqsnw0ppmh8f6x8j8ldpfza9308lspasgzbm1qw3cqa5sf2620w"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; - TENxBrainData = derive2 { name="TENxBrainData"; version="1.18.0"; sha256="1mk1vjqqnpc83x5m0js3j59vxi43yp4wrzj6yrrx7rn10xz26x03"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.16.0"; sha256="0551izai1apxs4xz9rd0f12dpbjk2qr0sz8bb69h4rxrbp2jg7r6"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.6.0"; sha256="0z31bqcw2mjqx1vv34z55zcy2s2xnzj1h53j4nmxbwfncj40b9sm"; depends=[ExperimentHub SpatialExperiment]; }; - TMExplorer = derive2 { name="TMExplorer"; version="1.8.0"; sha256="13prp9ksh3k5w84bbvk731fda1psb45mi56dwd9n958rj27mwkgb"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; - TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.16.0"; sha256="0yy9bl3qqcyp8pw4afx90nn0z1zw070qhanwdlim0c4fg5p6g02l"; depends=[ExperimentHub]; }; - TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.4.0"; sha256="1xmim64br8zx57l50ip7sbyjfdwhlr8j29gzf00i610dmksb2sii"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; }; - TargetScoreData = derive2 { name="TargetScoreData"; version="1.34.0"; sha256="0n7lr3qvppy9pbvff66mk5dc9399afac7f3kn3xkfzpcfjc27b1z"; depends=[]; }; - TargetSearchData = derive2 { name="TargetSearchData"; version="1.36.0"; sha256="0dwsq9cclzxp7f6lhg22cs62gm60pgwx0w9z3h13zvign43ha8r1"; depends=[]; }; - TimerQuant = derive2 { name="TimerQuant"; version="1.28.0"; sha256="0b2vh4xcns8ypmjig42zggws7pffclic57sl7w1cdmynpmn4jr33"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; - VariantToolsData = derive2 { name="VariantToolsData"; version="1.22.0"; sha256="13hgmciikp246nwp0wk4528fad4ccmc587x8s45zg9ybi3ya00iw"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; - VectraPolarisData = derive2 { name="VectraPolarisData"; version="1.2.0"; sha256="0gl92bypw6axdwj83dxmvib7p72dl1n5vqfrsy398fahx24djwln"; depends=[ExperimentHub SpatialExperiment]; }; - WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.30.0"; sha256="0yi72kdihvrxf7w72fn24bs5r89pg10kc9myl8n4nmf2iiplcn0c"; depends=[]; }; - WGSmapp = derive2 { name="WGSmapp"; version="1.10.0"; sha256="0lgfmpmnwpmrg05nz8vxlkz3jwy6gkd74fl7a2f81bh2lrs4bgh1"; depends=[GenomicRanges]; }; - WeberDivechaLCdata = derive2 { name="WeberDivechaLCdata"; version="1.0.1"; sha256="1swdzlcja42adx4j5h82nskbks8lkhbq07gvb9p09q2lg8rylc7q"; depends=[ExperimentHub SingleCellExperiment SpatialExperiment]; }; - XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.36.0"; sha256="1r09wr45vjcr7yxxfi5l132bqg380bicdlz699961hbinvyg7pgc"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; - adductData = derive2 { name="adductData"; version="1.14.0"; sha256="0yfgjvq7qk5gvdjhrh2lyz77c6jd438ykd2mpfm6643zr2bkxp4g"; depends=[AnnotationHub ExperimentHub]; }; - affycompData = derive2 { name="affycompData"; version="1.36.0"; sha256="0qcjlm2i0z8z6ab7dknwl1pdmxv69hyfpj61lhygn8ks02al12kn"; depends=[affycomp Biobase]; }; - affydata = derive2 { name="affydata"; version="1.46.0"; sha256="1k2npkq41ik7c1cniz22vm9970ylrc3cjfr38iy5x5zmh8i35ypn"; depends=[affy]; }; - airway = derive2 { name="airway"; version="1.18.0"; sha256="0l706h1flvv4zz82w3qyj73g28cw094vsx4iq7ahhh0vyyxg9bjx"; depends=[SummarizedExperiment]; }; - alpineData = derive2 { name="alpineData"; version="1.24.0"; sha256="00r7ks6rgiwhqsayhv6l9z7i65jxgdvlj73r2mx6c04fg0nqp3y8"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; }; - antiProfilesData = derive2 { name="antiProfilesData"; version="1.34.0"; sha256="0kxya21ycp8fwkqbiziggf3k5y2d344qr1bk0yvncgjf7qvydfrb"; depends=[Biobase]; }; - aracne_networks = derive2 { name="aracne.networks"; version="1.24.0"; sha256="1hynz34hjc49vb2di23zs921p2k0cy3b923s20g7ajfz827cpjsd"; depends=[viper]; }; - bcellViper = derive2 { name="bcellViper"; version="1.34.0"; sha256="1fpgh70x2r68v0ximgcdphnyzq2hgiwbamyhbac3yka8flhrd1fm"; depends=[Biobase]; }; - beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.36.0"; sha256="15fmqxlp28j4mrbkg9fjk35ki8s15xn9kbh928cni2722b5pvxml"; depends=[beadarray Biobase]; }; - benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.12.0"; sha256="1zhxd4y7d4j34cpvrhidz2rqd4n7ngj7wpk1klpfn3kdrsm7s4my"; depends=[ExperimentHub SummarizedExperiment]; }; - beta7 = derive2 { name="beta7"; version="1.36.0"; sha256="13g2n1nywj5pd1pvhvwqqyc8q7vzxnlm9345ivfk0vnvafdvadmr"; depends=[marray]; }; - biotmleData = derive2 { name="biotmleData"; version="1.22.0"; sha256="0vizblf5sv5mj9j5w3wy48pv75c97bf4lcxd0fsz73lcfz446ja4"; depends=[]; }; - biscuiteerData = derive2 { name="biscuiteerData"; version="1.12.0"; sha256="0a2sk4f7lxllja3pbawd5apkcvlh2flw6xa69vn71860fi9k831v"; depends=[AnnotationHub curl ExperimentHub]; }; - bladderbatch = derive2 { name="bladderbatch"; version="1.36.0"; sha256="13zgwh3g6iy4pdq8w5wx5nmzh4ypc17d6apm9c1mv3y4xaya7i1h"; depends=[Biobase]; }; - blimaTestingData = derive2 { name="blimaTestingData"; version="1.18.0"; sha256="0wyvskjn3kfqlnfll36c86cb9gxj4vj194mvpy2p8mbmarhpb2qr"; depends=[]; }; - bodymapRat = derive2 { name="bodymapRat"; version="1.14.0"; sha256="1jfa3i1d1llhqqa5pxbj7raj09sw4j7ayclnr5325n49cblvrgln"; depends=[ExperimentHub SummarizedExperiment]; }; - breakpointRdata = derive2 { name="breakpointRdata"; version="1.16.0"; sha256="0f23i4ynb4vgn22c3d2l64z92rzv3qnwd4j8qyvalklrxkwilhfn"; depends=[]; }; - breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.36.0"; sha256="0rfcycjl3jz3fgx7h46hi40gppq640c0mdyf6nh42zc34ml49cml"; depends=[]; }; - breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.36.0"; sha256="11kv9bnbi1p8qlnyayqb7380mwx95a7cd5vljq3zmw74v6723h6k"; depends=[]; }; - breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.36.0"; sha256="1z7p2fgbd80hqqrphw6kr3hasx4ybigd4ilw22i040b8c5zkilfw"; depends=[]; }; - breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.36.0"; sha256="0rdjk0cl0shhfx3jr0cpnh9whhdcnbj6akhipc2c5sk2l7kagiz8"; depends=[]; }; - breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.36.0"; sha256="19bzlxj106ww4ffkgd15fhq4idqvnwa5slbb4f65xf0nnpf11s19"; depends=[]; }; - breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.36.0"; sha256="0kk048gs3ksg163hcscnb1ng3zswqg5mzzyy1jlb6q0rswh4f6zx"; depends=[]; }; - brgedata = derive2 { name="brgedata"; version="1.20.0"; sha256="0brjmgjcpx8ka1idxd4fm6aa1mgw1nbsa99di3j5n65k34dapzmi"; depends=[Biobase SummarizedExperiment]; }; - bronchialIL13 = derive2 { name="bronchialIL13"; version="1.36.0"; sha256="0vj61n1h52y1yhlf32pqvfz7zk77r02j7pxpd6aih8p7yhpna4f0"; depends=[affy]; }; - bsseqData = derive2 { name="bsseqData"; version="0.36.0"; sha256="15qii9mqm05p84m8m2w65rk2hayq354127j33f6dv8zfnyijr1sk"; depends=[bsseq]; }; - cMap2data = derive2 { name="cMap2data"; version="1.34.0"; sha256="10r4dbw76bzhqc2aclksib0nnyzsn59xwazaghq8cm0nbaidddf4"; depends=[]; }; - cancerdata = derive2 { name="cancerdata"; version="1.36.0"; sha256="01cmwqz3h8rbymgws6fsd5rdjiq0k8p9jyl31l5lqck53z1ngxfl"; depends=[Biobase]; }; - ccTutorial = derive2 { name="ccTutorial"; version="1.36.0"; sha256="0c76b68hasc8g452mc3q5w2d2xar8qp8hkpg0n98pyzlm5yddqzd"; depends=[affy Biobase Ringo topGO]; }; - ccdata = derive2 { name="ccdata"; version="1.24.0"; sha256="1gag2w14qb2jialkgwapdkh8l0impa6ni621za9gz08yvgw0m8c3"; depends=[]; }; - celarefData = derive2 { name="celarefData"; version="1.16.0"; sha256="1kblk1dl6ysxlfqb0z5jqcffniafsl786mpvgqw6hjxnjya5vz28"; depends=[]; }; - celldex = derive2 { name="celldex"; version="1.8.0"; sha256="1nn87ig61cy87n7fjz45x13xl7ap1frd2i6pgp2y2wx0lj83hamb"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; }; - chipenrich_data = derive2 { name="chipenrich.data"; version="2.22.0"; sha256="1rh329i39zc5ip6h7v5pdy8383ak0jdq27zvi2szci450sqrrmp1"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; - chipseqDBData = derive2 { name="chipseqDBData"; version="1.14.0"; sha256="06r2l4z26barr7fa0p7brpm5ds3c234vpbcd54g5chah57n2v420"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; - chromstaRData = derive2 { name="chromstaRData"; version="1.24.0"; sha256="0hip3b4dkkcqvy8n5ac8m1r7qa0hr3apb5a7wm9zi11dyzyin0g0"; depends=[]; }; - clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.8.0"; sha256="01p7qy2svm382v4ykfzndy562dlgrbzzzrf6rfnk6w1j5lhads1r"; depends=[ExperimentHub]; }; - cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.34.0"; sha256="0b08mq034w6xs64f9280ckvdz0g2r7glclpkpwmcw6rw73qi35w3"; depends=[cnvGSA]; }; - colonCA = derive2 { name="colonCA"; version="1.40.0"; sha256="0an3vhj7mbyyzpnpi078wcky8p83lr46dlj6079g13j0azpmf7cr"; depends=[Biobase]; }; - crisprScoreData = derive2 { name="crisprScoreData"; version="1.2.0"; sha256="0b0vkcd30m56cnk1rsincigs66yh5pvlmpzl61hz1iyhc7367bqn"; depends=[AnnotationHub ExperimentHub]; }; - curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.10.0"; sha256="07xaaqrxnyvq0binjyxdn1wy523frynkbql2wzhbhafwq9x02xnj"; depends=[]; }; - curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.14.0"; sha256="0rhcw4wy023g55586hz6zyvzlcb3cfmm0jp3rsa0iq8pbm2r9n6m"; depends=[ExperimentHub SummarizedExperiment]; }; - curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.14.0"; sha256="0mq25yi91hm60ak3mws7wi49hvllirxfzz4kqjxxr493bkdllxkl"; depends=[SummarizedExperiment]; }; - curatedBladderData = derive2 { name="curatedBladderData"; version="1.34.0"; sha256="1vp9w40v37xgjdsg8m0w7580h2i0xi823f34qik87mj1hr5xawsf"; depends=[affy]; }; - curatedBreastData = derive2 { name="curatedBreastData"; version="2.26.0"; sha256="02iflnwfpcmglj060w5zygqccii91n2s0vp9bkl1ppj6g409pxm3"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; - curatedCRCData = derive2 { name="curatedCRCData"; version="2.30.0"; sha256="0hbc3d1sj1mfqszmfgkmhpnkbw4mdapp85s7bj2spmcwf0pcsr0n"; depends=[BiocGenerics nlme]; }; - curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.6.2"; sha256="1qlsjif43pjsm7gkxlvixgpd457q9jgj3ikmvxan4wi6hfw4rxwi"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; - curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.36.0"; sha256="09zb3m32a2rqwgs2x6g1ixvwnbx0100mb2m8rkbkdlfczlnq9riq"; depends=[affy BiocGenerics]; }; - curatedTBData = derive2 { name="curatedTBData"; version="1.4.0"; sha256="0ksb30h6hlksxzgp0dl1f09jr4a59zdll9jnla8xcsbqqvbkm4g7"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; }; - curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.20.1"; sha256="0w3iv044gynhb90bis58dz6znh2fgy7zdgs1yyjzx4fphxzg32j6"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; - davidTiling = derive2 { name="davidTiling"; version="1.38.0"; sha256="1g8q0m03ss7nf2v3rk6db93mmbzy1kc960scs37pc3s9xdm7k9ak"; depends=[Biobase GO_db tilingArray]; }; - depmap = derive2 { name="depmap"; version="1.12.0"; sha256="10y1s5v6c74ynq8m0rck41w16hglnr700c322k5p9yzndf86f3hv"; depends=[AnnotationHub dplyr ExperimentHub]; }; - derfinderData = derive2 { name="derfinderData"; version="2.16.0"; sha256="147bf7x90prw1x58gy6w13l02sf6zbn4888ikw817k9n5ja3f3x1"; depends=[]; }; - diffloopdata = derive2 { name="diffloopdata"; version="1.26.0"; sha256="0kdh2kd0wv324nzi1zwx765hj2fblp02lnyabmyc0xdvinv64vmy"; depends=[]; }; - diggitdata = derive2 { name="diggitdata"; version="1.30.0"; sha256="020v1l8h8xmxk0v5fnbvp769mks71wzdmkqjawjngd7v0jj9zclp"; depends=[Biobase viper]; }; - dorothea = derive2 { name="dorothea"; version="1.10.0"; sha256="05vkb5mash2m8p6njk842sy5pz7vblrm8n9bphqbslm86kld5n92"; depends=[bcellViper dplyr magrittr viper]; }; - dressCheck = derive2 { name="dressCheck"; version="0.36.0"; sha256="0yrnm6i36zrcjri8fispnlk29wbrj5p2ld716qbd3v7i7kh65v2f"; depends=[Biobase]; }; - dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.38.0"; sha256="0f940198kz8i81s3j3sk5kiaradvk6f9g1w7y40kr92y67p0l438"; depends=[GEOquery marray]; }; - easierData = derive2 { name="easierData"; version="1.4.0"; sha256="0w8g2b6d0c97m796nl09s7ls8wzs6ir7947maygi0a9qv20b2n0x"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; }; - ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.38.0"; sha256="1303yzp75n9ipvvp5avajcs45p0nz6hqisgl2h58baq9qqxgda6z"; depends=[affy ecolicdf]; }; - emtdata = derive2 { name="emtdata"; version="1.6.0"; sha256="182v17zcsfi1k6vmyjg6m9pdmfzg9ljvhdvydgr63zmjhdh3l4p2"; depends=[edgeR ExperimentHub SummarizedExperiment]; }; - epimutacionsData = derive2 { name="epimutacionsData"; version="1.2.0"; sha256="10ihas90rqkfagi95hhvpz6clpwlsclv2vx2sgy4v51mwk71hhps"; depends=[]; }; - estrogen = derive2 { name="estrogen"; version="1.44.0"; sha256="00mw9cvvh28yp3brdm3jyaal3vkkwis8gla4v30glpivb3nd13yq"; depends=[]; }; - etec16s = derive2 { name="etec16s"; version="1.26.0"; sha256="1cbyzvymznf9rsi22psd61vsnf1m64zsq9fwz6yani7h4lr2i1sp"; depends=[Biobase metagenomeSeq]; }; - ewceData = derive2 { name="ewceData"; version="1.6.0"; sha256="15lrlg8yl570cxyqlh2cp7cy6l7n9bcbrz2dn9713q3649r9gh9z"; depends=[ExperimentHub]; }; - faahKO = derive2 { name="faahKO"; version="1.38.0"; sha256="04jc58rzd1ykchhvcg5zvi22gkj26g4a2qm9ciyky9my3mihjz1l"; depends=[xcms]; }; - fabiaData = derive2 { name="fabiaData"; version="1.36.0"; sha256="072hip7xgd55bbjbnnw645hm89cv7821j6m02d360hyi4l17kmbf"; depends=[Biobase]; }; - ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.36.0"; sha256="19fsyxdfaq75r7a7z0p4479afgk8bjbmnw8yh731s826hd5xbcjr"; depends=[lumi]; }; - fibroEset = derive2 { name="fibroEset"; version="1.40.0"; sha256="1bna044rbxmqck6rkq3dyrc3cgvvscpldzv4j7skw55d9vxy495a"; depends=[Biobase]; }; - fission = derive2 { name="fission"; version="1.18.0"; sha256="0lrwkwf56nqzwrn0vs5g8xr5vbb32qrlaif3c86z04jnzkdx3xnj"; depends=[SummarizedExperiment]; }; - flowPloidyData = derive2 { name="flowPloidyData"; version="1.24.0"; sha256="1fqv9hw18aa9rb7mq09d1njl0y8ix2m1njini99w7ivs1c19lcpa"; depends=[]; }; - flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.10.0"; sha256="100r6sjwkbwhw93prqszgnqsgs2i6m10kivzrqwrmk9kbr9ib58z"; depends=[]; }; - frmaExampleData = derive2 { name="frmaExampleData"; version="1.34.0"; sha256="0yxpsgqigv75dwy8hn9yrbxskqalh2wdhvp0iv84fr1m7md5k9pb"; depends=[]; }; - furrowSeg = derive2 { name="furrowSeg"; version="1.26.0"; sha256="1ig42k7xwxpmcn1iairmg3lqvii5jidrm6v62whjpmvafh7sqjvc"; depends=[abind dplyr EBImage locfit tiff]; }; - gageData = derive2 { name="gageData"; version="2.36.0"; sha256="1ikmf894d8bqk3n5yvsm4chvs65hi8drvdwdagkrfqvdrf0pb96s"; depends=[]; }; - gaschYHS = derive2 { name="gaschYHS"; version="1.36.0"; sha256="17mxnym5wqzjgli5rlkwrck5jp9qdhnvmqaqmsz4w1hjdx9raxb7"; depends=[Biobase]; }; - gatingMLData = derive2 { name="gatingMLData"; version="2.38.0"; sha256="1dhm48nrh1y0x6p50045cn6f21bg35i0b4z7bjymn9aw0n9r5fyk"; depends=[]; }; - gcspikelite = derive2 { name="gcspikelite"; version="1.36.0"; sha256="0kyy1pm7582am6rgfr8kbfw1diwb9zpsblgnbjq0c18zb3kg21sn"; depends=[]; }; - geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.34.0"; sha256="1xcnsg1cv1q13bwaqf4dyv05fbxpjg58c338v0nh9sg13nrg174g"; depends=[GenomicFeatures rtracklayer]; }; - genomationData = derive2 { name="genomationData"; version="1.30.0"; sha256="0k3zdpxjzv2nc2v11n0hk7gi8s7v1gjmmqslidqi2y77y1z64rpr"; depends=[]; }; - golubEsets = derive2 { name="golubEsets"; version="1.40.0"; sha256="1n92qi82if1myq6qn7143dn3bz021qf9x9pfq93sjp78gizd8n41"; depends=[Biobase]; }; - gpaExample = derive2 { name="gpaExample"; version="1.10.0"; sha256="0wprivx26a0c0j2yjp74af97019lafg3584i2ik3pbq9kn9qsnk6"; depends=[]; }; - grndata = derive2 { name="grndata"; version="1.30.0"; sha256="1wwhkjhnpn5qyvnk2a2x347gry834bk98ri62qgkn48i7bxdl4nn"; depends=[]; }; - h5vcData = derive2 { name="h5vcData"; version="2.18.0"; sha256="0im0wp751zqf46hvv99pmy7qz0j2hlr8mqyxljf8m0aydrhdd1c0"; depends=[]; }; - hapmap100khind = derive2 { name="hapmap100khind"; version="1.40.0"; sha256="1d0q84lz3a47znd7w3hjcml9awvkn4qaqk0zlxibifzzbqyh17ci"; depends=[]; }; - hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.40.0"; sha256="0lb36nhdj4vq7d87niwxllmyql0k283mxj41amcf7wr5i1lkx8bq"; depends=[]; }; - hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.40.0"; sha256="0bfsa6niqrvz4krwc8lgidx57n311lvnxdfajzxg0icinlji4nkc"; depends=[]; }; - hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.40.0"; sha256="0b3jmbf3brqd8w4f7ryzxkgis0g36ckr390gl2hw5llvsz01kr4v"; depends=[]; }; - hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.40.0"; sha256="1w0j2zgw5xd6ni13vgi61i4zikpf62h6miq8cfhqc6i9frb5h3an"; depends=[]; }; - hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.40.0"; sha256="1ngb3rwdz6891hlvy4qblj0p04l5hgcvj60yb1nfccbmg9389phc"; depends=[]; }; - harbChIP = derive2 { name="harbChIP"; version="1.36.0"; sha256="0dj0nmsqmp8wlhjisjj1dwiyspjkkk2jlb9qkp6p9c2brbbpzyc0"; depends=[Biobase Biostrings IRanges]; }; - healthyControlsPresenceChecker = derive2 { name="healthyControlsPresenceChecker"; version="1.2.0"; sha256="1a9i2qyhz5gf98096hll7q8mwzidff8jrnclw2z1s4w3wjmv1f8q"; depends=[geneExpressionFromGEO GEOquery magrittr xml2]; }; - healthyFlowData = derive2 { name="healthyFlowData"; version="1.36.0"; sha256="1s581y2z33420cjjmr05l0hsnrgiy3ifn7mhhndplsmfy9q36kji"; depends=[flowCore]; }; - hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.36.0"; sha256="0q5dlsndx9b77wndai51dk2mv6fw7qkixhq9vxrsvy7yapflc68b"; depends=[]; }; - hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.18.0"; sha256="0vx2gfxbk3fr4xcicwblrm1lcnmmnljpv97zrzlgyqmx5clj13jm"; depends=[Biobase]; }; - hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.36.0"; sha256="167wfkp7w6ly6mzmdjg7lq2r2dyp8f6fpy3nfg2r9yli76gmx59v"; depends=[]; }; - hgu2beta7 = derive2 { name="hgu2beta7"; version="1.38.0"; sha256="0n2g88j7rpqabb6gkq8gy0iml1dikkdknkkhzqaz79cmvj28iiy2"; depends=[]; }; - humanStemCell = derive2 { name="humanStemCell"; version="0.38.0"; sha256="1s5jlh5xiw5hgnk3x2c6y6rb5gjmbnc8mglih8kc10y9agghj2rv"; depends=[Biobase hgu133plus2_db]; }; - imcdatasets = derive2 { name="imcdatasets"; version="1.6.0"; sha256="0n0bk4kh8d7sr5c8w953d6ns17ylzjq5dic4rh953l197pdsihfc"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment SpatialExperiment]; }; - kidpack = derive2 { name="kidpack"; version="1.40.0"; sha256="10padi12jp5all6bpi2wp5wsx5cn7nxp100kcf9bm3rxkaqccfiq"; depends=[Biobase]; }; - leeBamViews = derive2 { name="leeBamViews"; version="1.34.0"; sha256="0p0mcwyhf052fviggi5vmg1xb8h1inp0vg4i0dqvqbh2w85fg3wp"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; - leukemiasEset = derive2 { name="leukemiasEset"; version="1.34.0"; sha256="0l23s68hdjj2pj3wfv8vzag6lbsd3py2463b2rgb084b4cnsc07b"; depends=[Biobase]; }; - lumiBarnes = derive2 { name="lumiBarnes"; version="1.38.0"; sha256="00bc1s583mkj9iqn64mgz3h64kj5dnq1b9lwgz73cn9zhgzll9lx"; depends=[Biobase lumi]; }; - lungExpression = derive2 { name="lungExpression"; version="0.36.0"; sha256="0pksq9gi0vahg10lnr81nacn5rlb6i3z495ymm7vqiiygc4mx81m"; depends=[Biobase]; }; - lydata = derive2 { name="lydata"; version="1.24.0"; sha256="031g2hzmrbf83ac4inn9670nn055axr60hiv9cj8jkjnwpi938sj"; depends=[]; }; - mAPKLData = derive2 { name="mAPKLData"; version="1.30.0"; sha256="01bd8zcxnncfkfdlli7ay4v8rh2wkhh6gidk7442qw86x7d1dxbx"; depends=[]; }; - mCSEAdata = derive2 { name="mCSEAdata"; version="1.18.0"; sha256="1bxnczhvmgf1ilff91h9g2kzk6i76l42gh2gfapjlkhd3g2wl31z"; depends=[]; }; - macrophage = derive2 { name="macrophage"; version="1.14.0"; sha256="1dwq7agr98pqv5f910kz8z4szscsrl15j4f4zakv8m1ajkyz53h2"; depends=[]; }; - mammaPrintData = derive2 { name="mammaPrintData"; version="1.34.0"; sha256="0bpm2w3p97sp0jwmqmzs2h4pizfj7x742pnnib5rbvlmc59ypwc0"; depends=[]; }; - maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.42.0"; sha256="0j8ikjbcpd703gpzxi7lx4hmsrh0p1vxz222vnw352imd2bxi58v"; depends=[]; }; - mcsurvdata = derive2 { name="mcsurvdata"; version="1.16.0"; sha256="1wbwf365wsd931y4a0vyif02svl16rx2rglxkw93i7cdkblpjr28"; depends=[AnnotationHub Biobase ExperimentHub]; }; - metaMSdata = derive2 { name="metaMSdata"; version="1.34.0"; sha256="0hw8kaysnw6kf524vmrkkzkins1r8a9w6a1x4k7zq1hklfvwb72x"; depends=[]; }; - methylclockData = derive2 { name="methylclockData"; version="1.6.0"; sha256="1ip9n0329d3wx4q9a4xpng6lzrls3yx93c0z9m0j2q1jsb8bwaxa"; depends=[ExperimentHub ExperimentHubData]; }; - miRNATarget = derive2 { name="miRNATarget"; version="1.36.0"; sha256="1ln3vz92ci3m8p165c33j2p6zxzgibmca9mdph1k1cc1mnp64jh2"; depends=[Biobase]; }; - miRcompData = derive2 { name="miRcompData"; version="1.28.0"; sha256="1gz7bnis42vmkx5h31nvrfy7gnvypb08sh5ayblfzfcva1mx14dp"; depends=[]; }; - microRNAome = derive2 { name="microRNAome"; version="1.20.0"; sha256="0hxwnhlvkhgjxljzmkjs94r3d1w4da8g2chryqyllsklhzs0g0ki"; depends=[SummarizedExperiment]; }; - microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.6.0"; sha256="15y39w53yn9jzm682fhq7cf971pcg78hn1xbdha7aavdnd4032vj"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; - minfiData = derive2 { name="minfiData"; version="0.44.0"; sha256="15s3kc629m2c78vkidmp6kcc28sn1wzjzrxazmd8z7x8cdad3q4g"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; - minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.24.0"; sha256="03kfxq5fq66y6z1aliyxam6dgxmr4asmxvqfzla8br5rpd1sa8qc"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; - minionSummaryData = derive2 { name="minionSummaryData"; version="1.28.0"; sha256="0cqchzvdk13y80xsxnkaxd4x6c14d6wmc0vml3i8mzdqfh2d5bz1"; depends=[]; }; - mosaicsExample = derive2 { name="mosaicsExample"; version="1.36.0"; sha256="1p1acg1gwc1xb7g66bikvcdjix007i5l9vi8r4qjm28h78iij1rj"; depends=[]; }; - mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.36.0"; sha256="0bdsfnb7qmazshzy2ww8vp2n3m0x27v65z94gw5bi6bnrmakl040"; depends=[]; }; - msPurityData = derive2 { name="msPurityData"; version="1.26.0"; sha256="07zjdbi5nyp2yq9x37wk4yg24s3c5l8gw1r91x0pb93kb52i5p1v"; depends=[]; }; - msd16s = derive2 { name="msd16s"; version="1.18.0"; sha256="0glsh139jn0by93f52850y5nbh14wbapc0qmr8ib7ql7y25q0l16"; depends=[Biobase metagenomeSeq]; }; - msdata = derive2 { name="msdata"; version="0.38.0"; sha256="0rrmf8dygql6pisac18khjk4fn2zk2wn6f9j2x3y4z5345s0a0hn"; depends=[]; }; - msigdb = derive2 { name="msigdb"; version="1.6.0"; sha256="01pxk4hs8zd89ck1q7h0apd4ypy7v7y9k4xx6rqd80wzn5bkc8rc"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; - msqc1 = derive2 { name="msqc1"; version="1.26.0"; sha256="15idd0dl3q3707ircfvylh5q12ndpa38fk5cwba59732092pc866"; depends=[lattice]; }; - mtbls2 = derive2 { name="mtbls2"; version="1.28.0"; sha256="0nd4zb7lr4v5fcms3qx8zhy72gwg41kk6x2b1q68hajf8dww6r9x"; depends=[]; }; - muscData = derive2 { name="muscData"; version="1.12.0"; sha256="062xiaaka1k1raq5mhmr1wxwb755ws0n00dki1zsj2kl4l4lca2f"; depends=[ExperimentHub SingleCellExperiment]; }; - mvoutData = derive2 { name="mvoutData"; version="1.34.0"; sha256="0lybg4whmlr8d7glmlnz981n3cg5ypmj2w7pdkxwphmm0l0bchq5"; depends=[affy Biobase lumi]; }; - nanotubes = derive2 { name="nanotubes"; version="1.14.0"; sha256="05i7yrmibbv4wgdnmlagmpnxzsv8hiqnf5w3cbpm3xvchmi3zzvx"; depends=[]; }; - nullrangesData = derive2 { name="nullrangesData"; version="1.4.0"; sha256="1991pdj4mwaryli85kn3v8lj367l9yqym6j5swmjmpgvszrk6b1h"; depends=[ExperimentHub GenomicRanges InteractionSet]; }; - oct4 = derive2 { name="oct4"; version="1.14.0"; sha256="1dzwbqwm10zhn1qr1r7d704jhm2knhccmy1zywgsr1y6fizwl6rv"; depends=[]; }; - octad_db = derive2 { name="octad.db"; version="1.0.0"; sha256="09wzmy23x1b1dc40a522kxw8ry2migs22h15bfzl10l8mxryibhf"; depends=[ExperimentHub]; }; - optimalFlowData = derive2 { name="optimalFlowData"; version="1.10.0"; sha256="123wfjjv8pcx4xjaggmcndmsdcsdx4jr9rj97wlzwf6f7inxq282"; depends=[]; }; - pRolocdata = derive2 { name="pRolocdata"; version="1.36.0"; sha256="0q1fi4msl2xyx3cgknwmfp9hlgqk46y68znrq0knnsz6fkl4n9qa"; depends=[Biobase MSnbase]; }; - parathyroidSE = derive2 { name="parathyroidSE"; version="1.36.0"; sha256="1yk7cyhsdj1zp87ggng8mciagp8kpkrnrv5qa9w1i8ap3dwvxrs8"; depends=[SummarizedExperiment]; }; - pasilla = derive2 { name="pasilla"; version="1.26.0"; sha256="0xi2f37v0ds6ivzgx53mfb2isvz8npn8wmdczg88ym6b77g6a3ki"; depends=[DEXSeq]; }; - pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.36.0"; sha256="072gqidg42235zfx8qqd8sv7kigrkagkkw4i3nj5sbxzqb1f8vvs"; depends=[]; }; - pcxnData = derive2 { name="pcxnData"; version="2.20.0"; sha256="1ga9azlwx6qfr1f452k80bg2kfkwf18mjk39plq0yjzisrj1jy5m"; depends=[]; }; - pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.36.0"; sha256="13c9f1hwfngkp3d4ljcm5xjlr6r6fsiyb06b18q3b8kp5wya9lp2"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pepDat = derive2 { name="pepDat"; version="1.18.0"; sha256="1cirzkhi76jjqf0cgbb3hq69ykkivpxl0nf52x3vi3wp67ai3x0p"; depends=[GenomicRanges]; }; - plasFIA = derive2 { name="plasFIA"; version="1.26.0"; sha256="0vbqjbfc75pb2gk49sl6aihmvcc38ylngyr1bgdvdxr0xh11imv0"; depends=[proFIA]; }; - plotgardenerData = derive2 { name="plotgardenerData"; version="1.4.0"; sha256="0zpsjr3q3jgd07091i78x4izcqaxk1dqyfanmy2z08xd313mqniq"; depends=[]; }; - prebsdata = derive2 { name="prebsdata"; version="1.34.0"; sha256="1qgd3bmlm2bcqyfsdhfnms6q1bsdi7k0pn9yd9lfwzd3yj9lns1m"; depends=[]; }; - preciseTADhub = derive2 { name="preciseTADhub"; version="1.6.0"; sha256="0hs04i0l0wsdcg9k2j2gbdfmi2cd05gmncjw8vbpiqc5170lcxnp"; depends=[ExperimentHub]; }; - prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.26.0"; sha256="1z2s8z98a3zbj9wjzwgma3pbl0z2bjkqv3lgslay3l8b7xb1pw2r"; depends=[Biobase]; }; - prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.26.0"; sha256="008d32f1wva5n75cdz4lf0pcm0bszjc0qklc69mxq64riq1z410h"; depends=[Biobase]; }; - prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.26.0"; sha256="12hndm71gqicmkll47dc9blxq650k20bny7dgckg4jx1ck5j8dmr"; depends=[Biobase]; }; - prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.26.0"; sha256="07k18cx9i0ca29hf00dfmqp3qbqdlh10hfx4kwn4q42ixj57hkf4"; depends=[Biobase]; }; - prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.26.0"; sha256="0bg8jdvqhrh6qyyp5jsrsv09wzixsxkwfx7j1g7jz5w4zh3z35rx"; depends=[Biobase]; }; - ptairData = derive2 { name="ptairData"; version="1.6.0"; sha256="16x9c6gp7mg8hiw9hv49nmx41hd5sxxhyblf2jq8gf1aydvmfpij"; depends=[rhdf5 signal]; }; - pumadata = derive2 { name="pumadata"; version="2.34.0"; sha256="1pc7jmx5qh3zj5wk7kjfzlbq2cipw0943fw5ykqivvlinlg7f57y"; depends=[Biobase oligo puma]; }; - pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.12.0"; sha256="1icq59yifsaxifxl29pxx97vrl27cfkwqziz9cpcbc3lqfp8iqmj"; depends=[ExperimentHub]; }; - qPLEXdata = derive2 { name="qPLEXdata"; version="1.16.0"; sha256="177gin4y9jb7188myan5h847yzanwgfwjiwrdz2bd2iskbygbsq3"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; - rRDPData = derive2 { name="rRDPData"; version="1.18.0"; sha256="16p33xyp8pw2sx2bq4fhlxlmrlfy0b6zqpnf1f0dy1857nll6kp4"; depends=[rRDP]; }; - rcellminerData = derive2 { name="rcellminerData"; version="2.20.0"; sha256="1imqc82pfmxpiscajslzw6fyy8qplabmyq6745p963pjh7kqk7qb"; depends=[Biobase]; }; - restfulSEData = derive2 { name="restfulSEData"; version="1.20.0"; sha256="1j3ix1900mckca70n4qjzaw44mwzqfbvc5nb0ww23b5ihbly0gls"; depends=[DelayedArray ExperimentHub HDF5Array SummarizedExperiment]; }; - rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.36.0"; sha256="1ks94mcjvr6fm9ww2h2ll9kcnmm0skycj58z6g5g98182nximy65"; depends=[]; }; - sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.22.0"; sha256="0ysf3mssn9mpkpcy1p4m93h7fc4finb8gnv73046bwmzc3nlysj8"; depends=[SummarizedExperiment]; }; - scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.4.0"; sha256="0nkr32jm772ksrc8yns1j4nbc4sc83hcw4v6l6imwm845dv8n4kz"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; }; - scRNAseq = derive2 { name="scRNAseq"; version="2.12.0"; sha256="1kzsd2armxy4b8q574qc6wzjnf668y8zdp9mkqjnigsvfxnw65zb"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scTHI_data = derive2 { name="scTHI.data"; version="1.10.0"; sha256="0a46f981h3b99qpys48845cy5a75bv07w64bbmzn9kxy12njdbwf"; depends=[]; }; - scanMiRData = derive2 { name="scanMiRData"; version="1.4.0"; sha256="0ijb1m2fcvg02zhw8nxvbidl5j422p1szqii5xaqxwy7jq3hygdk"; depends=[scanMiR]; }; - scpdata = derive2 { name="scpdata"; version="1.6.0"; sha256="0kmymij0zm9sramba3nmg88ci6dvypcf36lh9bmshn692cp0ga4s"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; }; - seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.30.0"; sha256="058fi3p0kmvk7p7j81jgcysw17ws0ppnsfkxljp01w111aqlfgf2"; depends=[]; }; - seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.34.0"; sha256="16giir805vrqgfvvkrivh9jzd7kbblk3yk9ykqczsn6fjrmkbbac"; depends=[]; }; - seqc = derive2 { name="seqc"; version="1.32.0"; sha256="1iz5d3snnk1zqiz90m3m29138wwh9zpv6lqqff1bphir0sn3dhk1"; depends=[Biobase]; }; - serumStimulation = derive2 { name="serumStimulation"; version="1.34.0"; sha256="1x2ipkpgw8ln8n7s5naiw69vqk7jdqvbpvc3551i3fiph8dp5j7c"; depends=[]; }; - sesameData = derive2 { name="sesameData"; version="1.16.0"; sha256="1a5aq0lzs5w2zrvdm3fwg34rx36ypzpzwhyrw2w1kfpdpnb41gpz"; depends=[AnnotationHub ExperimentHub GenomeInfoDb GenomicRanges IRanges readr S4Vectors stringr]; }; - seventyGeneData = derive2 { name="seventyGeneData"; version="1.34.0"; sha256="08xfx7y42y7zhy7j5qjsvzgy71fi6zdzsnz8zidsrjqbvky5j0bw"; depends=[]; }; - shinyMethylData = derive2 { name="shinyMethylData"; version="1.18.0"; sha256="1bwqfg29dghnr6d3ds4cj48w7azrmi0ichlvbpbvi4p5p0v06p4c"; depends=[]; }; - signatureSearchData = derive2 { name="signatureSearchData"; version="1.12.0"; sha256="0s4pcfnkks8bw9igj5nx3b21zpyj3zzl4dy71wc5zfb9xdzbrkbg"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5]; }; - simpIntLists = derive2 { name="simpIntLists"; version="1.34.0"; sha256="02613cn3rix33pybf6da78yi76ccswr69mkcvhfx0h78hpgk9qy2"; depends=[]; }; - spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.4.0"; sha256="15ajjp19kfnfdddsrsgdkwa28f296xpb7jza51cnyix34n1xzrhi"; depends=[ExperimentHub SummarizedExperiment]; }; - spatialLIBD = derive2 { name="spatialLIBD"; version="1.10.1"; sha256="0p88kl1l59iy0hs2jm4xg100lgnplzak6imq9pqirgnp0j5py4db"; depends=[AnnotationHub benchmarkme BiocFileCache BiocGenerics cowplot DT edgeR ExperimentHub fields GenomicRanges ggplot2 golem IRanges jsonlite limma magick Matrix paletteer plotly png RColorBrewer rtracklayer S4Vectors scater scuttle sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment statmod SummarizedExperiment tibble viridisLite]; }; - spqnData = derive2 { name="spqnData"; version="1.10.0"; sha256="1wccrbnk1mgpi9hfk7agjyhlkv6awpmk1iaqng9m6540s51wqrb2"; depends=[SummarizedExperiment]; }; - stemHypoxia = derive2 { name="stemHypoxia"; version="1.34.0"; sha256="177zrz7pg3i5rl2yl2mv8chasaa6kjanmqp1q1fn3lxb5w7cc12w"; depends=[]; }; - stjudem = derive2 { name="stjudem"; version="1.38.0"; sha256="07hv42g9p2n2yflp5zfss3n8l1mbfvx70xrgd4jshrbf7vq52w7s"; depends=[]; }; - synapterdata = derive2 { name="synapterdata"; version="1.36.0"; sha256="1bihd9xg92v62p20hfk0q00jvfbpzpz80qlsqh14h5dcn663ivc3"; depends=[synapter]; }; - systemPipeRdata = derive2 { name="systemPipeRdata"; version="2.2.0"; sha256="1cywnnwxbwn1bfvha5dqc29lgb3q05hxdh0icql8w8lizv8z0zj6"; depends=[BiocGenerics Biostrings jsonlite remotes]; }; - tartare = derive2 { name="tartare"; version="1.12.0"; sha256="1ygv0h8v7yll9b0kp0v8sclbhwwlkz062ycxg5qa0yzkbr5msysc"; depends=[AnnotationHub ExperimentHub]; }; - timecoursedata = derive2 { name="timecoursedata"; version="1.8.0"; sha256="11kkf874757nka958vdg9nm4cqfv5rfy5jikm3bpw2k4bz5v3iwc"; depends=[SummarizedExperiment]; }; - tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.36.0"; sha256="0pax9b36bq64ry9wcpyrqlggqc2mfqxxp3yvv1hsxpsyb880xlmz"; depends=[]; }; - tinesath1probe = derive2 { name="tinesath1probe"; version="1.36.0"; sha256="0rjq0rpm1bq8jb63qa8ywzi6dp4dvwn3hyx7qqmgb2dazymqz8hj"; depends=[AnnotationDbi]; }; - tissueTreg = derive2 { name="tissueTreg"; version="1.18.0"; sha256="0wzxpi9ix1c6jk553vr87vhpfbigf4c280ynms4kl46rn63v3zvz"; depends=[]; }; - tofsimsData = derive2 { name="tofsimsData"; version="1.26.0"; sha256="06wyfskxy4mr6bf9c2h4idc637x7dnrfm2affd0wvfggypi8nxh9"; depends=[]; }; - topdownrdata = derive2 { name="topdownrdata"; version="1.20.0"; sha256="0hhl8wsj3x3ff9lv703qw9knyprm8ajlfbqqrlx37vkviwxb90zi"; depends=[topdownr]; }; - tuberculosis = derive2 { name="tuberculosis"; version="1.4.0"; sha256="0qai1w2gvwr6kz8jgb0g8bdb56xsasd9z18fjn85z0k87ml9pnw6"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; - tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.36.0"; sha256="19n0gw60vv4kygckdcl70qy16gm1hcwv5zg4dgn1a6mxpj65ksn6"; depends=[Biobase]; }; - tximportData = derive2 { name="tximportData"; version="1.26.0"; sha256="08xrfs8bca8vyh4wx5nd8mf7r8z3q46wflnrn2w57zavymgf8dqs"; depends=[]; }; - vulcandata = derive2 { name="vulcandata"; version="1.20.0"; sha256="0r0bs5d27knwpgpnhszg925slxdha94nika533iv3ggkv5f4927v"; depends=[]; }; - xcoredata = derive2 { name="xcoredata"; version="1.2.0"; sha256="0frv5xzqldxqylz82557acrnlzjakc3f1kpdbirvv19aj744x2h0"; depends=[ExperimentHub]; }; - yeastCC = derive2 { name="yeastCC"; version="1.38.0"; sha256="0c8mx5amk60gdjmrxjvm9qnhfh6vsxlz7n96a8a45c2xdyrr9bbz"; depends=[Biobase]; }; - yeastExpData = derive2 { name="yeastExpData"; version="0.44.0"; sha256="1z9hi3gflpj39ajg73gmyf1nx2sm0nl51fb5mb3giiwal1kp9js6"; depends=[graph]; }; - yeastGSData = derive2 { name="yeastGSData"; version="0.36.0"; sha256="00z4yvmyqnvwvbnp79k5hn85q4k8g54d46v7nmbkwf0nspj381wb"; depends=[]; }; - yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.34.0"; sha256="03vdl4wh11s6yqj8j9ws8is2yq7awwlr4h6q426lww6hnkadfbyw"; depends=[]; }; - yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.36.0"; sha256="1vqpm9jjs3d7ab9vkan7622dlz0z6pjnjy0dcr3xl3nc23kbvg3l"; depends=[]; }; - zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.18.0"; sha256="1nmgh1v2sryhhx0zrysv54lwvk63sqhhsks5jrvahpqd64p4k3qk"; depends=[]; }; + ALL = derive2 { name="ALL"; version="1.42.0"; sha256="0zjzssk27sjjxji4fk2zdnpffvav6wi2rvl7x7pv8jx2vq2ik5fi"; depends=[Biobase]; }; + ALLMLL = derive2 { name="ALLMLL"; version="1.40.0"; sha256="1vksmxwnzvcfk42i1pa4m714vvvry78fqhyayi3nav7361f2ywf9"; depends=[affy]; }; + ARRmData = derive2 { name="ARRmData"; version="1.36.0"; sha256="1x0xhpgjg92zyh8qw68hhh3lkq1w0r5qgc99bsik6vkbaas7ga0m"; depends=[]; }; + ASICSdata = derive2 { name="ASICSdata"; version="1.20.0"; sha256="159s1hdafllfjykfbg51r3qj6aggq2d44hhvjg0ka89ymmgwr9gz"; depends=[]; }; + Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.36.0"; sha256="1iimk7p8sqvd830s0k14qjm8nn8429n8nwnkymc33l04vmrsz4m9"; depends=[]; }; + Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.34.0"; sha256="1sys60fvgxwzvpifdjx905dki1x43al6k5n3jdw1g0ani5dzd8sl"; depends=[]; }; + Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.38.0"; sha256="022zp78s95albpw9mv9dq0lww090pi42mqyafjmfc7ykp1a6jrcv"; depends=[]; }; + AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.38.0"; sha256="1rzb1wkdsmrx1rfsawyfdfm2ic45mzpck27cl10jc440fm9yl3fj"; depends=[]; }; + Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.38.0"; sha256="0084p8c6r3ksgyb5fkwxddv2r73qkz6lnd2a7bssyy7x2jxni492"; depends=[]; }; + AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.40.0"; sha256="061z0nbbihp75lr1zs9wadq27y6841y096pvi2qr38q3y0nk8nf1"; depends=[affy]; }; + AneuFinderData = derive2 { name="AneuFinderData"; version="1.28.0"; sha256="1q1y4x7ngfcn4ykl8ffypw7w32jxxiww3a90sn5nyf5vwkagp3bz"; depends=[]; }; + AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.30.0"; sha256="1ymcc4ld1iq4svvz1kxrwx6cgi7ap15ql0xc57kmfn688jg633xz"; depends=[]; }; + AssessORFData = derive2 { name="AssessORFData"; version="1.18.0"; sha256="15s26z20xgdg9y1wp2wcbq1rlkylw2y35hf565njvgy3kvysh8wr"; depends=[DECIPHER]; }; + BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.38.0"; sha256="1b7hzv3azxj66j0ak10qv4mmvh558cph0h1vxn2qpv5hqvad3463"; depends=[beadarray GEOquery limma]; }; + BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.8.0"; sha256="1b4j9gbs36gdrhfadxl3qll6w1phwjdmklxxyv5i85ypkjm9y5ya"; depends=[ExperimentHub minfi]; }; + BioImageDbs = derive2 { name="BioImageDbs"; version="1.8.0"; sha256="13g6km5bbadzjpdsc5biwifj02d4q1f8n2gxfrzgsdxgcs7ml149"; depends=[animation AnnotationHub EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; + BioPlex = derive2 { name="BioPlex"; version="1.6.0"; sha256="13az5q1bwyqwv3hm33hv9m8kmy3wkyj80l7wd8iq70zp39ica47q"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; }; + BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.20.0"; sha256="1mrczpgc0byvhz6bg1nrjsrjja3wx6z9rqjm3i89rx0hmbvvgga5"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; + CCl4 = derive2 { name="CCl4"; version="1.38.0"; sha256="1w0c7bj4bxkpi2mwjf4v06f2mff50lngjwpgbxdr8blcggwb1d57"; depends=[Biobase limma]; }; + CLL = derive2 { name="CLL"; version="1.40.0"; sha256="1vzv34mnvmb2ml1fpizxcqrh8aha74ahsa17jl2hswq0ax8ci5h9"; depends=[affy Biobase]; }; + CLLmethylation = derive2 { name="CLLmethylation"; version="1.20.0"; sha256="0g216ybjqkw74907n0ljm9nhdh7i0ai5zl1hw4j1ypqy0kh5lxh1"; depends=[ExperimentHub SummarizedExperiment]; }; + COHCAPanno = derive2 { name="COHCAPanno"; version="1.36.0"; sha256="0krfgw9jkwrywl1lq5drmn983xdfy2kv3vdqszzr6ybqw1kz0fxv"; depends=[]; }; + CONFESSdata = derive2 { name="CONFESSdata"; version="1.28.0"; sha256="04qav5yv0027z7nb3axs5rpmcshiybhkfc0kna6svnv8vm3qxkls"; depends=[]; }; + COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.36.0"; sha256="0vsdswn2qa3yz4n9ii3vqnq33y4j9k71isbb5rqx08z0cd1f1qy2"; depends=[]; }; + COSMIC_67 = derive2 { name="COSMIC.67"; version="1.36.0"; sha256="1vhrf9f2wgp2yxs9g780b4n6m4777f0n3p7kk8pjw5b0580gcq5b"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; + CRCL18 = derive2 { name="CRCL18"; version="1.20.0"; sha256="0nx6hzbx9717mm1ywa4c2yshzd3p32s0rycv7ka0fjymf0wb61wz"; depends=[Biobase]; }; + CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.32.0"; sha256="1cyqb22ajpv12lfxbwma5rdbyr23m0wpzsmia28mn9k060mj9pmr"; depends=[Cardinal]; }; + CellMapperData = derive2 { name="CellMapperData"; version="1.26.0"; sha256="00akrwc9ilnl1j21jmhvhrz0jii6jlkb19pyfj8hr2s1i610w59k"; depends=[CellMapper ExperimentHub]; }; + ChAMPdata = derive2 { name="ChAMPdata"; version="2.32.0"; sha256="05y2ji1h3n4mhj2l0axk8p1dppjhxjil57hvy1rgx63pc2nciysq"; depends=[BiocGenerics GenomicRanges]; }; + ChIC_data = derive2 { name="ChIC.data"; version="1.20.0"; sha256="105kmdbl5k3yzp1nnmk72pdaalas1aykjrb3an8li19fb2p07xli"; depends=[caret genomeIntervals randomForest]; }; + ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.38.0"; sha256="0d1gl855bmyapr00i8xhd50q2zb3f22kipb8yb2nb4qrzwnjakcf"; depends=[bigmemory]; }; + ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.24.0"; sha256="08b2h7w8hl463znsj2rjijqjnd758zjmycniczzzqrr8rcfdp2sn"; depends=[]; }; + ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.38.0"; sha256="1hgc2a7wsbw5ivdjknv82p3pvznq29lm8g4fdxy6dyr781xghs0w"; depends=[affy hexbin limma qvalue statmod]; }; + CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.16.0"; sha256="0rwrqkyhs9jlmyqbahla7n39hksmq305468yksxnix8jkbigb1l6"; depends=[]; }; + CoSIAdata = derive2 { name="CoSIAdata"; version="1.0.0"; sha256="0mckv22h4x6grg3nr0p4kkmhip050xgnmq2p4d4v3qg237qdvacv"; depends=[ExperimentHub]; }; + ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.36.0"; sha256="0wsmlrsajyhkspvjqqkva5b982q07rmayrd13g0byrxljihcabkq"; depends=[]; }; + CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.18.0"; sha256="1ljv0q15mbq60ajb5ajhwi100x9mm87wjs9i87wxvbddqbj1sb2x"; depends=[ExperimentHub Rdpack]; }; + CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.32.0"; sha256="1ljzaz87341n3v5xr4p0kljqans64qkpqjnq3cb3z1lq4g7py7l7"; depends=[]; }; + DAPARdata = derive2 { name="DAPARdata"; version="1.30.0"; sha256="04z5a4ybnv5940r1c1xj8mlm5l41fdfrw63dbf31110jjzxgs3lf"; depends=[MSnbase]; }; + DExMAdata = derive2 { name="DExMAdata"; version="1.8.0"; sha256="0v3wmfa525agshf76y8rmrwv53zz9ych13y6ggw908w902csbc7w"; depends=[Biobase]; }; + DLBCL = derive2 { name="DLBCL"; version="1.40.0"; sha256="0wrjh76q2msbxmp6fwnbhyzrqfmr063pfbhxcw6rv7vc3ysgljbf"; depends=[Biobase]; }; + DMRcatedata = derive2 { name="DMRcatedata"; version="2.18.0"; sha256="0zdkhc0vy021yhbb4bqs8k1mfw2gdjngsy2lnhh66jjnv798w1zy"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; + DNAZooData = derive2 { name="DNAZooData"; version="1.0.0"; sha256="192ra4fdjq99qi4zsbr0x3b86sqnffwj1iz8qx3k3lx64lzshhi0"; depends=[BiocFileCache HiCExperiment rjson S4Vectors]; }; + DeSousa2013 = derive2 { name="DeSousa2013"; version="1.36.0"; sha256="1wdi643f53gz6n81hkb89vf67krsdis77d3xlvgx5vizs8prj3mc"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; + DmelSGI = derive2 { name="DmelSGI"; version="1.32.0"; sha256="1fkmm2j1gclffzsbjs5mkhibqkrf0vm2v1jymg5jr5qj227bksnh"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; + DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.38.0"; sha256="0dqc3k9bbgxk0bxi4hwxf2iinr6i3nk6cdqvprj6nl291b55zd0w"; depends=[EBImage]; }; + DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.10.0"; sha256="17ap7r7d2v2wfx4hj9l0l31anrhwc5mnyjbnqyqs1vj6g3wkz29g"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; + DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.36.0"; sha256="1rrln6a9bfk2xwrgjpfqd2sdrfk0nwzhcj1jijsr1nifww9sr1jf"; depends=[]; }; + DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.18.0"; sha256="1lxcz8h9n7cnb9grmbz4drcm032zjy7ji6vhgppf4im4rs86l4v6"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; + DvDdata = derive2 { name="DvDdata"; version="1.36.0"; sha256="16s6qdn54fw3jdc8y6p13kv50andbm0b6z9ylv0fgjyljsyac8d9"; depends=[]; }; + EGSEAdata = derive2 { name="EGSEAdata"; version="1.28.0"; sha256="1g7vqzkljndy94rwn6xzf1b9cga3cvslcxvans2lb0dw0968sxsr"; depends=[]; }; + ELMER_data = derive2 { name="ELMER.data"; version="2.24.0"; sha256="08kaz2mzmp1flkmml11kr9pi9520qkf3hbcj4s1dnk58895rhbkc"; depends=[GenomicRanges]; }; + EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.38.0"; sha256="0mzvlv2bmjkyl65473x1nrwppx7pz3sss1ch6f1x1yivrl1schns"; depends=[GenomicRanges rtracklayer ShortRead]; }; + EpiMix_data = derive2 { name="EpiMix.data"; version="1.1.0"; sha256="16x2b0g3lmbg1x3sdv9058y7z8gpbbwxbhw0y2a25zi3jwiyhb0r"; depends=[ExperimentHub]; }; + FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.36.0"; sha256="0hrw0vrzs49vfp0jkql146xcmcbhx8gkqp2smw3xbnbpvmmqvp69"; depends=[]; }; + FIs = derive2 { name="FIs"; version="1.28.0"; sha256="1c9xh9izxjvl494k02sfl49ybibrac3977m10dgr554gqjqvz11i"; depends=[]; }; + FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.10.0"; sha256="1nxm8ai37fifs3lpcrm3y36f4xdi84bvkq4hc94a8817bhbcb5la"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; + Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.36.0"; sha256="0acv2djfssh3zvx8n5b9ynqs2hwhaxjnd59hnxb3kplnffrfkafp"; depends=[Biobase gplots limma VennDiagram]; }; + Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.36.0"; sha256="1phawh484wpnkbanxzh9kmjdl036cs4wgy6kwyn3q1phmyj6x5b0"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; + FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.38.0"; sha256="15xymy34yf0fymm8mjg15djmgrkjzsfbl878ckcahvfwzbhndk2p"; depends=[minfi]; }; + FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="2.4.2"; sha256="01xmpya936jp1bn2h287k44afkd3hdkclfsfaysa4gky85jsv3hi"; depends=[AnnotationHub ExperimentHub genefilter minfi nlme quadprog S4Vectors SummarizedExperiment]; }; + FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.28.0"; sha256="02ywll7xlx2p3b0la8kphrzbwd036aidk393j9fi28m037q3yziy"; depends=[minfi]; }; + FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.16.0"; sha256="148difprh307fm2lax6p06gxa5mqj7ijn52ysg4kw07cwyrn3b8x"; depends=[AnnotationHub ExperimentHub IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; + FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.26.0"; sha256="18d5wf7n2v4a4p0bl6jfvi8pflg4xd0fxz1b8m0mcflxz3zph5wq"; depends=[minfi]; }; + FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.36.0"; sha256="0v71xriinzyzb4d5gasf0as86i6wq7plxnhsrz6a50h8i5pcxp83"; depends=[minfi]; }; + GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.18.0"; sha256="00y1yki2w4912p7s7wzz2m0ry6awvn9dzs41lc6nxiy6zcwpy2d0"; depends=[]; }; + GSBenchMark = derive2 { name="GSBenchMark"; version="1.20.0"; sha256="0v91l3hw8jbj631h102c58sxy0sx9zx40qmmraywf46lpfdzmy43"; depends=[]; }; + GSE103322 = derive2 { name="GSE103322"; version="1.6.0"; sha256="0h2smriyw0bvr6aigp08mlhw1dp9wgr3pcd92kazvxkak19437rm"; depends=[Biobase GEOquery]; }; + GSE13015 = derive2 { name="GSE13015"; version="1.8.0"; sha256="1hh5960780ckyv4y1p1dqba7gh48mg4cbzlfdya7rjhv3wrxjsy4"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; }; + GSE159526 = derive2 { name="GSE159526"; version="1.6.0"; sha256="1qdhrmy6ckzvcj77ishablhwdpk3f17px35ybvqascq1a8fnh3ys"; depends=[]; }; + GSE62944 = derive2 { name="GSE62944"; version="1.28.0"; sha256="04x0qpy7x68s9z7ap2gg5k638jq0grhrvv87vb6sn1fnifi5r5n7"; depends=[Biobase GEOquery]; }; + GSVAdata = derive2 { name="GSVAdata"; version="1.36.0"; sha256="1z1ibk7iifla2hv3hgmjqa6lznvwz0k022la4k6jr3ag4xzwvb1n"; depends=[Biobase GSEABase hgu95a_db]; }; + GWASdata = derive2 { name="GWASdata"; version="1.38.0"; sha256="0c33rzk7g90fsawixr814n4fnqakk10a3v87dzdpv3p5chn6v494"; depends=[GWASTools]; }; + GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.8.0"; sha256="0s75cc0bq9j6qz2sigy6hfhnqilk2krixzn1y5krcx94c3g5vjxl"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; + GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.28.0"; sha256="1ag28yhaq7zcny7cirh7pqs84g782nlyv5hvylwgmiwzya6zgllw"; depends=[]; }; + HCAData = derive2 { name="HCAData"; version="1.16.0"; sha256="18wvvndvjff7i2cikhmbzvpdy0vj39c9124wgrlyfk7mkic2vbvv"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + HD2013SGI = derive2 { name="HD2013SGI"; version="1.40.0"; sha256="0ja89v320kyi24br003jr8xmmkplh5pfp83gf7ah0j73dwx8ihsz"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; + HDCytoData = derive2 { name="HDCytoData"; version="1.20.0"; sha256="1v6wv1vs6q29n7yiqakqysjnxy5xzcfqzwa84d3w2bn237zmi6r5"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; + HEEBOdata = derive2 { name="HEEBOdata"; version="1.38.0"; sha256="1q5c1nfr73f087w2v48dxyx52kmavnm5ikmvlks2ls7z22m8l2qz"; depends=[]; }; + HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.40.0"; sha256="0zmxycxw7722084m840y0yk9dgnqaak4ds74mnrymwv2dipwwa91"; depends=[]; }; + HMP16SData = derive2 { name="HMP16SData"; version="1.20.0"; sha256="0dg08nmj4s9wlg2v7r3jgjph8vwdrizwpiyi6ip38amyivhv3dcv"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; + HMP2Data = derive2 { name="HMP2Data"; version="1.14.0"; sha256="04p2hqbnzdnlsk916hkxrz6xk4wwrzpf0q4phay9qf46rf1akmq3"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; + HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.20.0"; sha256="1agml5ysxaksy13zd6y59qqcwqxn2ipzwpd7hf6ad41w39lwv6yf"; depends=[]; }; + HarmanData = derive2 { name="HarmanData"; version="1.28.0"; sha256="09q55j8y51iiq2smhz3ll9inwj8x7b8wlp4jxqlr8qas4ry2xy4j"; depends=[]; }; + HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.22.0"; sha256="0xihwysrnz3pbdci8dnw5irlr4lkgs2ll7fj1adjqrz5v9w3c856"; depends=[ExperimentHub]; }; + HelloRangesData = derive2 { name="HelloRangesData"; version="1.26.0"; sha256="1h9bckqkxh3h6cmyz37hmixs7razayar9bdip0fx0bwfx42dv3rz"; depends=[]; }; + HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.20.0"; sha256="17a0z64aik6z2b8kd1nf5ks3q92042jkp5lix9rnwr5g1zj0k458"; depends=[]; }; + HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.36.0"; sha256="0a795z4scdzmdg9nykayc6yl1i9wb4pyc82ha7d1ybibv4cq54hm"; depends=[]; }; + HiContactsData = derive2 { name="HiContactsData"; version="1.2.0"; sha256="02jjqf2nyqgrf3vsy8m8whs4dgrp1fw26fal24kcqkkh46mx25m6"; depends=[AnnotationHub BiocFileCache ExperimentHub]; }; + HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.12.0"; sha256="0f21yh0gvxnz5bd0092cdh5rfq672lh6ka8wv5qs7wnnmswmjhgc"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; + Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.36.0"; sha256="0j49srglb46ya5vdk74s1jb0lniddi852nzclbrria5lw7myydhl"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; + HumanAffyData = derive2 { name="HumanAffyData"; version="1.26.0"; sha256="18mg6f7h9v9s5hp0qjmj0kjag5s8l9piqwlql3v9fd3bvb3cmr5v"; depends=[Biobase ExperimentHub]; }; + IHWpaper = derive2 { name="IHWpaper"; version="1.28.0"; sha256="0h1zp5yi2m1yabbwz026hyi861gn7qdpfxm74msaw9jq5yssid5l"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; + ITALICSData = derive2 { name="ITALICSData"; version="2.38.0"; sha256="1pzdsjy9aggqb7kmlw5vig0rgyvn53kdgc67lip3lf589d2gzgm1"; depends=[]; }; + Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.36.0"; sha256="09h1l9j0c7q4g31rxq7fw8m4z0n5q71yziwdvgaiy5cpfwqjckqy"; depends=[]; }; + IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.38.0"; sha256="0vihvafpic31ykn2wb9xd0hmbrffyjyf1dgl29mq63xifmcvrfgc"; depends=[]; }; + Iyer517 = derive2 { name="Iyer517"; version="1.42.0"; sha256="14qx24m9z6vvprljd2py80nf8zhglb38z0av32h4741z4f0xzl48"; depends=[Biobase]; }; + JASPAR2014 = derive2 { name="JASPAR2014"; version="1.36.0"; sha256="1lghgnz543j921va752fwll4cw7aniz2nz1w1ddxwiszvymbflf9"; depends=[Biostrings]; }; + JASPAR2016 = derive2 { name="JASPAR2016"; version="1.28.0"; sha256="1c7c7s71gs80z84g6aigh0z23drjimhf91ks3g5k8py7285kxi07"; depends=[]; }; + KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.20.0"; sha256="0vwfv9abs1js73lf5lblg43n95n71f2mflmhhidnkzh5vjks1wmf"; depends=[Biobase BiocGenerics]; }; + KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.38.0"; sha256="0lvdvsd2vxrcgbj6w4jfh35a5bc6z9p9srhfsdv07x081ps3gmdc"; depends=[Biobase BiocGenerics]; }; + KOdata = derive2 { name="KOdata"; version="1.26.0"; sha256="02hdm1q09zlpkringl9r6id3437lv8sx1w7m0z9c1q78qbwq4grl"; depends=[]; }; + LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.8.0"; sha256="074p90hasbd1cp1y6j10fvhav1f24lzd91w8vx27lsy5b2l5bd2l"; depends=[ExperimentHub]; }; + LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.38.0"; sha256="0axnw804p2rnywd69a0d6sy9d5mrbhwyp9pidia53iqzvpmz9n6p"; depends=[IRanges KernSmooth]; }; + ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.31.0"; sha256="0kysss2f1j75y1rx07nyqp7dfd5qh48qz9ffb5rpsi43a0295pbn"; depends=[methylPipe]; }; + LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.36.0"; sha256="0jy79a07c2bl2awinafym60x5z4yx9wwn9kpw1qdyvgd58z76cn6"; depends=[]; }; + LungCancerLines = derive2 { name="LungCancerLines"; version="0.38.0"; sha256="15gz5q3bgqd1hdb6fxvsli0d49qlmfp9nmvkascbndnzl31l4g52"; depends=[Rsamtools]; }; + M3DExampleData = derive2 { name="M3DExampleData"; version="1.26.0"; sha256="06gf301gmrjssszz73gh6l7mhsnrjsr7smr3ylp86pm031bpix0i"; depends=[]; }; + MACSdata = derive2 { name="MACSdata"; version="1.8.0"; sha256="0rfdax75nqi4krjs0dkixnz99likfzibkn5gc95dgwvg09p2h3zg"; depends=[]; }; + MAQCsubset = derive2 { name="MAQCsubset"; version="1.38.0"; sha256="0iyiw4whgqqyr1qq0l1iw0jx4nxyjzhfpn7p5hhhlnq8fh3jghbk"; depends=[affy Biobase lumi]; }; + MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.38.0"; sha256="09nrmg7nj7cp64g607zbf74w2mp8lcwxwy4v22xjjmnk9vfv98x7"; depends=[Biobase lumi]; }; + MEDIPSData = derive2 { name="MEDIPSData"; version="1.36.0"; sha256="0fg0chd8dxsddri47741y7v3cvhyg8sdx4ia3syrrf06mjrx27dh"; depends=[]; }; + MEEBOdata = derive2 { name="MEEBOdata"; version="1.38.0"; sha256="08pzvw8kkgmwyng27kwyna483ibynac9qcqy2sjrzqks8dsq3b87"; depends=[]; }; + MIGSAdata = derive2 { name="MIGSAdata"; version="1.24.0"; sha256="1s7fyf8n86a3znacjjs0zf22amw4rlgnvw2idld0np0yz81ggzs2"; depends=[]; }; + MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.14.0"; sha256="06hij0aylifyfj6pa0kbbaz06y9rdamrs76mvh6h38yzsnm9mgp7"; depends=[Rsamtools]; }; + MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.36.0"; sha256="0p4l0brczasfpfmc3mx3662g8dni644q19lp4jcmdcjy5mkv4f4r"; depends=[]; }; + MOFAdata = derive2 { name="MOFAdata"; version="1.16.0"; sha256="09c2qr11sj2m90ygqnzc7z2sa5rs79fsyjqn9njfyq6gq63wbq12"; depends=[]; }; + MSMB = derive2 { name="MSMB"; version="1.18.0"; sha256="0ghkba9jph3sbc677a7x7wxhvrjh0whnq6dvix6ql5d377mxx5sq"; depends=[tibble]; }; + MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.20.0"; sha256="14mii5v2s9ml5vazy55nf9b5qqb22ibbayapiwc9j0qqyvi8xdc4"; depends=[]; }; + MerfishData = derive2 { name="MerfishData"; version="1.2.0"; sha256="0097riwwxi41hm2xdglbakfb9wf7p9p7mikfg48hd7axgj2hykma"; depends=[AnnotationHub BumpyMatrix EBImage ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.20.0"; sha256="0q2cl5pkqa0r5hqbqs7jww1jjfdlmjvd5cnfq73g86kyg4hpl88z"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.20.0"; sha256="00xgw0zsmkahyccksfzgkajk37d018frm7sg71x0b04n6rbc1ipv"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.20.0"; sha256="08sk8ghgx29sd5r0vjy02xmpc4r5pnsmcbixdh4jwmakhq500r57"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; + MetaScope = derive2 { name="MetaScope"; version="1.0.0"; sha256="0z6dibbqqvhmjspylr4qfxqf58ifayc0wsknvkp4gbf7w6vqacx6"; depends=[BiocFileCache Biostrings data_table dplyr ggplot2 magrittr Matrix MultiAssayExperiment qlcMatrix R_utils Rbowtie2 readr rlang Rsamtools S4Vectors stringr SummarizedExperiment taxize tidyr]; }; + MethylAidData = derive2 { name="MethylAidData"; version="1.32.0"; sha256="1zalfay2h59pnjs0gv9i5rk2paiqd6mvs5bhvc3gp7sy5xkr3d5m"; depends=[MethylAid]; }; + MethylSeqData = derive2 { name="MethylSeqData"; version="1.10.0"; sha256="0gfr0ic7fbys270kyd060nad0x1amnf9n2i1rip6j8s56bllw7kg"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; + MicrobiomeBenchmarkData = derive2 { name="MicrobiomeBenchmarkData"; version="1.2.0"; sha256="1928cjbhagairm3kdxbjp8zqfvs895glbkxg700sckcvb7klrw53"; depends=[ape BiocFileCache S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; + MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.14.0"; sha256="155kci5isq7mlbvv8mdl2jjpafm3pbv1likhls70aa746spr1h17"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.8.0"; sha256="0q94dfyprj4g3n7mxh70zpabmn6w6jl8d4wqk26h2ix6amwbr6yz"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; }; + NCIgraphData = derive2 { name="NCIgraphData"; version="1.36.0"; sha256="13p934lh5zhlj8824ih3fl36k8rdmym4xqfd4qpjr80mzdy8kxrg"; depends=[]; }; + NGScopyData = derive2 { name="NGScopyData"; version="1.20.0"; sha256="04xpwrpsl5l7zmymvax1l7p99sg21h96j0q5bq4ydv1jlzby6klx"; depends=[]; }; + NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.10.0"; sha256="0lbwzbcqz0xk28z2c0blx7c93bvz41pnr7pywj1p9cd7r705z3dk"; depends=[ExperimentHub]; }; + NestLink = derive2 { name="NestLink"; version="1.16.0"; sha256="0a032dq0k2k17y7lz752a4ghg1j1w3x8kd7bwjw61ry2plr8gysl"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; + NetActivityData = derive2 { name="NetActivityData"; version="1.2.0"; sha256="1kza7dp2xvdmn31yw7pngsr604bkam6yf35wgh57cg70y3azz13k"; depends=[]; }; + Neve2006 = derive2 { name="Neve2006"; version="0.38.0"; sha256="1q75ldhww0kgq050b64310qnw81haz8wacz3rwkb1q217frbr4lx"; depends=[annotate Biobase hgu133a_db]; }; + NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.6.0"; sha256="0b0swgv8wmqdkmg9ymrcasl2k0hbbgd19ci78fwg6csz84x2j9lx"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; }; + OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.18.0"; sha256="0vryqb2xj20dhcnis7ld9r39az8jz99pbwxn9xvdv96a8jnnc731"; depends=[MultiAssayExperiment]; }; + ObMiTi = derive2 { name="ObMiTi"; version="1.8.0"; sha256="1d401zci1qngmz40712g3nbq48dfalln12slbchrdahyh1lyw8r9"; depends=[ExperimentHub SummarizedExperiment]; }; + OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.22.0"; sha256="1mqmw52a7r3q67n78micnv2xfqs0g8kj1x853cx0pfmhmr7dpi8w"; depends=[rJava]; }; + PCHiCdata = derive2 { name="PCHiCdata"; version="1.28.0"; sha256="0y8ff897yqvlz3cxz4c16y2qx9yil5h10igwwrs8pka14n61ay42"; depends=[Chicago]; }; + PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.40.0"; sha256="1m2h33rk4czs2x0axnj539whjih7ydfhrhgphg6g7dsd417pdihv"; depends=[affy annotate Biobase PREDA]; }; + PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.34.0"; sha256="1ngzn64yr05h25m5k4glnxpf47m47nkx38c2x5rxh9g68rv8gi16"; depends=[PWMEnrich]; }; + PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.34.0"; sha256="1dzas863k8s3cr4a79iiw1750c2azhgxscbdv7qsy86kx8jzysaz"; depends=[PWMEnrich]; }; + PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.34.0"; sha256="0w8f5v4j54ywv3mg9bv0sdc8wsab3crjc21qs3hl0pjihv719v3f"; depends=[PWMEnrich]; }; + PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.28.0"; sha256="0wyahjm7cd53f735vlw7gfvdcryzkhdc6b2nxy4xlis11g9a890m"; depends=[]; }; + PathNetData = derive2 { name="PathNetData"; version="1.36.0"; sha256="0bywy6p747fnbfw17yjn86b57y1xggdx5n60m5jfs6zlpd6ldg9q"; depends=[]; }; + PepsNMRData = derive2 { name="PepsNMRData"; version="1.18.0"; sha256="04vff5s42bkhyl2zf05r06blvp11qpz326fd13jrgcsx8lkrr0ys"; depends=[]; }; + PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.14.0"; sha256="02fhwgbd22v4ra7r3dzhz39ls2l0la5fczn38ljm3xqmvagacxw9"; depends=[BiocStyle Biostrings ExperimentHub]; }; + ProData = derive2 { name="ProData"; version="1.38.0"; sha256="1vc5zhpmv2ixcfd1sqhy6csbl458wda8wdwywqjwxsgnkpj55pba"; depends=[Biobase]; }; + PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.26.0"; sha256="0mgqdx12gz0zbvbljrbiav3k7j3394ab44h6m5kl2v4ky76w5nfp"; depends=[CAMERA LOBSTAHS xcms]; }; + QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.30.0"; sha256="1rifky3pyzjdd5qhgda0kcfms3zb3xk4j6bys4h5zkqkcyn4zya2"; depends=[QDNAseq]; }; + QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.30.0"; sha256="1sbi24v6sigfrxvfw1pjl41fp66q9qkjqll7gfw8rdgn9c55875w"; depends=[QDNAseq]; }; + QUBICdata = derive2 { name="QUBICdata"; version="1.28.0"; sha256="0kd5ciyphw34s7zi0g9df2kbg4395yvyfxkbz49nv6byqc9x8a1d"; depends=[]; }; + RGMQLlib = derive2 { name="RGMQLlib"; version="1.20.0"; sha256="042y3nbs706mbx10ffbd47bs147p34qk9sj2iw84c703ly5y6v0g"; depends=[]; }; + RITANdata = derive2 { name="RITANdata"; version="1.24.0"; sha256="1d6mi3nvdlp7v37iayfhxqgagv8m3gy5i4gylqy7jgdh0rg9gyin"; depends=[]; }; + RLHub = derive2 { name="RLHub"; version="1.6.0"; sha256="1lx4w9m5ddzx3v4ky7yxiq7ydd0dl7xfh9fcmf53apc6fnql13h2"; depends=[AnnotationHub ExperimentHub]; }; + RMassBankData = derive2 { name="RMassBankData"; version="1.38.0"; sha256="1f1zycvicq788xdwqr28j1ml7gs33kjvl49bjb2bjjnw338863n1"; depends=[]; }; + RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.38.0"; sha256="1cvc5nm4zdy36ghbx40ynami41cbsna194lnhjnf43qp9agxvr3r"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; + RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.14.0"; sha256="1nhn3i5jvyw99133smk6k29b62lnw9fsy2l0hzkman396ffcli4p"; depends=[ExperimentHub ExperimentHubData]; }; + RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.38.0"; sha256="1q9dzm3h2i7b10c5i53flpgsrywx6wfmkcm0185jb71qp2pd72n3"; depends=[]; }; + RRBSdata = derive2 { name="RRBSdata"; version="1.20.0"; sha256="18sgiijx66nzp9gxi1s311svvki3y6q3wmm1bvkih8sw153k8nyi"; depends=[BiSeq]; }; + RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.28.0"; sha256="1kq0zm99m5b8qm204yzqjhqf50xjxf8ia321x59283r64snf0jci"; depends=[RTCGA]; }; + RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.28.0"; sha256="0y2xbld3wzb8l0ynq92pxxygk16vf39cwp85lfghs2g23vr18rxw"; depends=[RTCGA]; }; + RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.28.0"; sha256="08rlzll772hlw3j6y7kp29gshjikyxs4z4av4392jmxlssh81gxh"; depends=[RTCGA]; }; + RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.30.0"; sha256="11l4iz50dq8ym3ah7s1fh11sh8rzd7hzhcll1ah75r8wicj7pkfv"; depends=[RTCGA]; }; + RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.28.0"; sha256="1z3i60qxx47p2vzijbyfba1kzf2106aqp56ksrxc2d7gyb168mkd"; depends=[RTCGA]; }; + RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.28.0"; sha256="1svyqy2xwnmqb8hdhzbj1r22ar3mzk9rbyb7vd3fz7k9k4ja979i"; depends=[RTCGA]; }; + RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.28.0"; sha256="0qfnii0x0pzx4jirmnvk4mgr4av14gj3i2jpgi0nblhcccjbrjp5"; depends=[RTCGA]; }; + RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.30.0"; sha256="11mhy4jv6y77n00pl69piiwm6ppsmfggli703l1w4ddyv7qrbxll"; depends=[RTCGA]; }; + RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.30.0"; sha256="0qcgpfq8jx5h6b1bdrpk9axn8jbbvga8l5bxxjn07xnjih0licxm"; depends=[RTCGA]; }; + RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.20.0"; sha256="19jcad2mwjgazxmkqk5gswxx4bman6rz56fl9p6bcav5vhxrwyp3"; depends=[Biobase]; }; + RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.20.0"; sha256="1izg549fmq14jcwqwnjklcgqqfw9iwgg0b7z946hcafw8j2p5g94"; depends=[data_table]; }; + ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.14.0"; sha256="135xbi9xwlvhydg75x3jkm00banzlxixsbgnl425bcgvwd0yzgg7"; depends=[edgeR limma ReactomeGSA Seurat]; }; + RegParallel = derive2 { name="RegParallel"; version="1.18.0"; sha256="1vv82qp9wrq7ijz7ckza6ggdrcqyxr06pdzf8dzjfxgayg5hb75y"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; + RforProteomics = derive2 { name="RforProteomics"; version="1.38.1"; sha256="0xim44shhsyf9f1vwghza16vsj1i5vks0hs21qaq8i700iak64mh"; depends=[BiocManager biocViews MSnbase R_utils]; }; + RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.32.0"; sha256="02zdyy8m0bxq999s4jva5rw0xi1vs1y4ayz7n5m92xmcygii5vf2"; depends=[GenomicRanges]; }; + RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.32.0"; sha256="0672v6nq3hfakalj07j14gb5q6y7pvwwg1n6qd3ihbvidjkbwb38"; depends=[GenomicRanges]; }; + RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.8.0"; sha256="0pspzzf5df4cidrqxqh189pkj4gmqycyfhj64q9s2z0yla7f00ga"; depends=[GenomicRanges]; }; + RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.32.0"; sha256="10nnpcslsz66d0lb6d45mi81bjy3lacqmg5b6b45vqnpd2dyfp8s"; depends=[GenomicRanges]; }; + RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.32.0"; sha256="1j5zzvd1la0gds19k72n08j1k7ca5c2l5mdv791qmhsajsc2gw8b"; depends=[GenomicRanges]; }; + RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.32.0"; sha256="0shwbvazcgcd48l3vlf26kd9x5jhl0fa2wiy8d1bic69976zxjp7"; depends=[edgeR]; }; + SBGNview_data = derive2 { name="SBGNview.data"; version="1.14.0"; sha256="1nm4w12v7j9c5sjd8fybzda219rzcrr53majp8zhdmlvhc32jnqz"; depends=[bookdown knitr rmarkdown]; }; + SCATEData = derive2 { name="SCATEData"; version="1.10.0"; sha256="0p0y8mkcg99dpwvp7spxx047kyr7mdflnnlfpb4i232q0yxz2z03"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; }; + SCLCBam = derive2 { name="SCLCBam"; version="1.32.0"; sha256="0bd791ixndsqmc7jxwszxs4ldn2bd31wmh94123jid8qr0lgk8qr"; depends=[]; }; + SFEData = derive2 { name="SFEData"; version="1.2.0"; sha256="1fnp12l64086rjjjs3d5axskhzc1r1lq1xgyj84akdpn1n90r4g7"; depends=[AnnotationHub BiocFileCache ExperimentHub]; }; + SNAData = derive2 { name="SNAData"; version="1.46.0"; sha256="1hm33xjn7wq9aw2x63dqz9dys9rv4lbl24pzbpndn65wl5qmzsk4"; depends=[graph]; }; + SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.36.0"; sha256="0z5vw7y1f3adkpiyxmz2xlgq0ywz9klcpkr53m79wy217zgi2fva"; depends=[]; }; + SNPhoodData = derive2 { name="SNPhoodData"; version="1.30.0"; sha256="106vzq39jkr3psw7j8vr8d96phqrjhqcimgdvc1hf8l9s2y352zj"; depends=[]; }; + STexampleData = derive2 { name="STexampleData"; version="1.8.0"; sha256="1bx4n81ybcxp7z4sfz3qk12fh3qfvaclaaxcb82x78f9xl07fq1g"; depends=[ExperimentHub SpatialExperiment]; }; + SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.32.0"; sha256="1y07c6kqslrr7bb0y114hvw0jvgf6pgqh3dly398f41p8xi8wj6z"; depends=[]; }; + SimBenchData = derive2 { name="SimBenchData"; version="1.8.0"; sha256="0fq196gvb3i12f1b0q5xfhfg4amxskd7bgzy03x0k62v5bk4w27f"; depends=[ExperimentHub S4Vectors]; }; + Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.28.0"; sha256="03apc7nq51lmqnvch0idzviz35d12n1pzhxaa44zxw9jvbfps9a2"; depends=[]; }; + SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.12.2"; sha256="0ki0qi3dc3zqlcb7w95xrpmr3fshqzg6a26cnc06yyysfsxalsnk"; depends=[AnnotationHub BiocBaseUtils BiocFileCache ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.8.0"; sha256="11nkyzjrc7jd88qyx5i3s0l7zzh6ld1w59fxaa9v7bx72b1yjvh4"; depends=[ExperimentHub]; }; + SomatiCAData = derive2 { name="SomatiCAData"; version="1.38.0"; sha256="0f82mxh59gsxpfggzjh4qz8pzh7bwif05kn0kpi5ja0nj8mgj0c4"; depends=[]; }; + SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.36.0"; sha256="1j1ky7pff22h08jn9is7afwplqq8ypg7cv81i0ymjfnjlqiks1h3"; depends=[GenomicRanges IRanges S4Vectors]; }; + SpikeIn = derive2 { name="SpikeIn"; version="1.42.0"; sha256="1zwfw7k74xnn6fa3wzrpsgb2rlf3cmc0v5r78pyrdd3il5lkkbaa"; depends=[affy]; }; + SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.40.0"; sha256="0pf497ww9x7pxmii4sww437svpms8s51hrn8n05w2xhgrpi8cysh"; depends=[affy Biobase]; }; + TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.36.0"; sha256="17fcm8qpqrc5mwa9pyj77dh5a28k7k2wj6dipckdfpl34dg3n8nz"; depends=[Rsamtools xtable]; }; + TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.36.0"; sha256="17r6vh1n1d7017717ix0scfsqzqzgldq119qyjdlg1f4qpngdlas"; depends=[]; }; + TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.24.0"; sha256="1846ss0rjm24qgl6lm6g7jmviap6gl5zcf3cskz5dj6i70afcpbm"; depends=[SummarizedExperiment]; }; + TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.20.0"; sha256="0jnm7qca2j72jhddhs10q5vfalpips7bs5mlmk4ma9gcbcjzwqql"; depends=[]; }; + TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.20.0"; sha256="1yd68ral8v7ix2i77vph1y9kp67hrb6mz2lchjkw9x6lkagvfgh5"; depends=[Biobase]; }; + TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.20.0"; sha256="1avv6skwirf0ysvppwbv9xid9dgbnbzwabkn0x5ilry8cj8qvcqy"; depends=[Biobase]; }; + TENxBUSData = derive2 { name="TENxBUSData"; version="1.14.0"; sha256="0cr0imz4w9j4hy0siknyiml68x0038j779a5wk7pqggpqpc4x7qw"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; + TENxBrainData = derive2 { name="TENxBrainData"; version="1.20.0"; sha256="12rdkpv8x3baad762pgszfswh364v78fmza9v3ml6j4kk88qjcvj"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.18.0"; sha256="1yd03zrqzwz16c8k4k3nbz89n1z2b2xbbzgwslbn4kji303pd5np"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.8.0"; sha256="1nniysrja6sgk643p8vj9mw70wiwzwlcv8myackn8bpqz52misr3"; depends=[ExperimentHub SpatialExperiment]; }; + TMExplorer = derive2 { name="TMExplorer"; version="1.10.0"; sha256="03l8l3ax979y1fwlldgfynkd5s31dfh2l38d7dmdrcn89y3y1sjc"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; + TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.18.0"; sha256="0pndzjyvzfa83wmv3wry4faks3lf3jbc6mh768dqc7k5awvhj009"; depends=[ExperimentHub]; }; + TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.6.0"; sha256="0ghy0fyjh6pd7h85k109bmfwc829zwpf18bss385h0528zjaj6zk"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; }; + TargetScoreData = derive2 { name="TargetScoreData"; version="1.36.0"; sha256="0dv52qhw53f04kgsx915ckhw5h5jd2dh3r95iii30pdn1ffhic2l"; depends=[]; }; + TargetSearchData = derive2 { name="TargetSearchData"; version="1.38.0"; sha256="09xhlih952y6dz1jpc9pg8spgki7zcprl08vp4msj2jzy7b4s8nj"; depends=[]; }; + TimerQuant = derive2 { name="TimerQuant"; version="1.30.0"; sha256="1xyxra4yxd5jf2ksb9pgag3vjn8r33wlp1czsmxianzkikyg44gw"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; + VariantToolsData = derive2 { name="VariantToolsData"; version="1.24.0"; sha256="0kschpjhqhrrrihzafmpzb6n1ccjmi7f3s1a90s6221hh65yynbl"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; + VectraPolarisData = derive2 { name="VectraPolarisData"; version="1.4.0"; sha256="1v4z6cnil1l1xqnfl57ph6ijr34dw1dnbyayx0c2drb3hzq0c0fa"; depends=[ExperimentHub SpatialExperiment]; }; + WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.32.0"; sha256="03kw9i5szm6jwc5lh9v5h22gm1kd2vhi4nlb24hibi8g5dnk0pkb"; depends=[]; }; + WGSmapp = derive2 { name="WGSmapp"; version="1.12.0"; sha256="1w12rli8agaqkhhp7nj8b22mnkjg8p740sz677pdbllnm672zzq8"; depends=[GenomicRanges]; }; + WeberDivechaLCdata = derive2 { name="WeberDivechaLCdata"; version="1.2.0"; sha256="1m3vi57qk9ivrqjf223b839fipvllsxx8mw8x34whzv8mfj5x1mw"; depends=[ExperimentHub SingleCellExperiment SpatialExperiment]; }; + XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.38.0"; sha256="1fbhypw6pa38lfr4i3f1j5d73p3hmrd9rjxmqghq3yss2jlk7hb9"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; + adductData = derive2 { name="adductData"; version="1.16.0"; sha256="1rnwlrg8m2hxclgi9c1vqzjglxafsqy6j5kd28gpfwc4ajm9a4hk"; depends=[AnnotationHub ExperimentHub]; }; + affycompData = derive2 { name="affycompData"; version="1.38.0"; sha256="1carhmn76iwspz66rpkmchg2jsggcipy8byxcgjx5z4cgmjky6fr"; depends=[affycomp Biobase]; }; + affydata = derive2 { name="affydata"; version="1.48.0"; sha256="1x8l03wgw4zv1g5fw33hk3wd4zmhrmknrs46bl437adzib47i61i"; depends=[affy]; }; + airway = derive2 { name="airway"; version="1.20.0"; sha256="0z6p2la2va4x5ak8v7n5iwdnp4wcsy044k7sif9x98vh4wbc6s96"; depends=[SummarizedExperiment]; }; + alpineData = derive2 { name="alpineData"; version="1.26.0"; sha256="1337y1y8q5y8yh2r2bji8fz3nhcxbn5s6pfnnkb8kvg8r0avgmkz"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; }; + antiProfilesData = derive2 { name="antiProfilesData"; version="1.36.0"; sha256="1flb19c5v9k7qnhc7mk686ml6lc4llgh35ajd7lnpjv9r490jbkc"; depends=[Biobase]; }; + aracne_networks = derive2 { name="aracne.networks"; version="1.26.0"; sha256="1dh8f1x9lqb5rm1h65r3lidrqfq11n85dq7p4pm11cnnnv4xnszp"; depends=[viper]; }; + bcellViper = derive2 { name="bcellViper"; version="1.36.0"; sha256="1ghdp307gc0y1h8956qjq1iipzipnm0jxvv2k08lzggdvhq28740"; depends=[Biobase]; }; + beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.38.0"; sha256="1w6w2kw3fnrixzhb7420b17smmlcjg7xmdz36xmx3f7i67dfsw28"; depends=[beadarray Biobase]; }; + benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.14.0"; sha256="18ihbg53054yg8vxg8g4zd4dggq20gr5bvb5ivaxphjp8z1dvdsm"; depends=[ExperimentHub SummarizedExperiment]; }; + beta7 = derive2 { name="beta7"; version="1.38.0"; sha256="0l7kskdzh3zy30g7hq3xwyjpq3iyh74qb8fbzgfjr7gy7g2f43ml"; depends=[marray]; }; + biotmleData = derive2 { name="biotmleData"; version="1.24.0"; sha256="13fm555fpfq2pziyls85gi10j5k8hmkk13i2bd1x74kc272zawqn"; depends=[]; }; + biscuiteerData = derive2 { name="biscuiteerData"; version="1.14.0"; sha256="1m0kml2frddynmdkxk9s7sh5bqca3n6vm187jwdydv89qkwy75k5"; depends=[AnnotationHub curl ExperimentHub GenomicRanges]; }; + bladderbatch = derive2 { name="bladderbatch"; version="1.38.0"; sha256="196nnncdyzajslyd2jlsqs9b88q6rdrdl4h0sh5q0z892wpqk70h"; depends=[Biobase]; }; + blimaTestingData = derive2 { name="blimaTestingData"; version="1.20.0"; sha256="1jn0ynifm5dqf3wwfhzid1lm7zb1hvpvf8f623hd6hnryby1702a"; depends=[]; }; + bodymapRat = derive2 { name="bodymapRat"; version="1.16.0"; sha256="0ypmfdc7cgvr04vhp1x8fya933zzp2rzbfp7wzagxqh93k4515sa"; depends=[ExperimentHub SummarizedExperiment]; }; + breakpointRdata = derive2 { name="breakpointRdata"; version="1.18.0"; sha256="0wzv4gyd0idri35ixca9dxfxfgfhm4nz84gxbf44wb45dr869j0v"; depends=[]; }; + breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.38.0"; sha256="0qlp2v9yw4i5svkrh5wp7arsh32nhwv1gl8nhfzj5rx5zfgmmk4f"; depends=[]; }; + breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.38.0"; sha256="0n7jmwyjn9dz52hhmszipqdyl9c7zzd4k58sll7rz6z1q1hbbmlg"; depends=[]; }; + breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.38.0"; sha256="0534iv39ksj9xnkxaxqqvjbi2d82i4w068r6ayh196wgr1fvymsg"; depends=[]; }; + breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.38.0"; sha256="1a6khghn3fr6qv0k2llg0ypj94s50ndcbd2qh00mxjacz0wsf9cp"; depends=[]; }; + breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.38.0"; sha256="10vz5qxdn4qrk107djs34gc0h1gw5idi0f19hj4ln4049ms0yjav"; depends=[]; }; + breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.38.0"; sha256="0823c5prrbv5v3pjlnwh80hiavirlc7jk3hj5qqlj6177nx7izc4"; depends=[]; }; + brgedata = derive2 { name="brgedata"; version="1.22.0"; sha256="0vqp4wnzm330sjvbgbmxc369m46j6i0jcawid7h63g86ywhk2js6"; depends=[Biobase SummarizedExperiment]; }; + bronchialIL13 = derive2 { name="bronchialIL13"; version="1.38.0"; sha256="08rpaxbxhf8p7rm25jxy8npb5bva6l60h8v47vmdn6j8p8sd7yl7"; depends=[affy]; }; + bsseqData = derive2 { name="bsseqData"; version="0.38.0"; sha256="1ppmasfmxqw2nz6sdszgrjnbh52bzhnjyi4gi1snn8ar6x05s2px"; depends=[bsseq]; }; + cMap2data = derive2 { name="cMap2data"; version="1.36.0"; sha256="0n35j81h62rq47c9p9blksfmm2135ahhz6jlkrgbrdffn9yrrc6m"; depends=[]; }; + cancerdata = derive2 { name="cancerdata"; version="1.38.0"; sha256="15s24n71zpasrr50zi6f91nn6q7m447l9x1l0xyqfpkw4pw3l327"; depends=[Biobase]; }; + ccTutorial = derive2 { name="ccTutorial"; version="1.38.0"; sha256="0gn7ipg707jll8yd90rd7iqjwa1ndrhrgli8lda12rgkw4hd1d5b"; depends=[affy Biobase Ringo topGO]; }; + ccdata = derive2 { name="ccdata"; version="1.26.0"; sha256="1yjsxr477ncjfmjki4h0aavbhsn2qq0wchrc53f752xwhr4wbksm"; depends=[]; }; + celarefData = derive2 { name="celarefData"; version="1.18.0"; sha256="1r321x3y0l618cl1z3bv3fz2fnvyk4xmic59x75kxx7bvgrzz6gn"; depends=[]; }; + celldex = derive2 { name="celldex"; version="1.10.1"; sha256="064njbv7057rbvh94wynlvhpxwal86calnr7ib8260brycykv4ai"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; }; + chipenrich_data = derive2 { name="chipenrich.data"; version="2.24.0"; sha256="18yn7p8pyxhp18fq7xa9kkplxrj806nkq591zznrxakamkqdnnz3"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; + chipseqDBData = derive2 { name="chipseqDBData"; version="1.16.0"; sha256="1w2bn4n2l7sxq8qbnr3p73kxgykn865f06ydpc9ymp9myjzam51m"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; + chromstaRData = derive2 { name="chromstaRData"; version="1.26.0"; sha256="1gspbyz5vkymgivq2zppizcp8bknbdl04nxdlp55dk5mwd56sarw"; depends=[]; }; + clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.10.0"; sha256="09hyn88wxc7pqhl314rv4aip1wyz1czlzjx09r21xb5148hkplh1"; depends=[ExperimentHub]; }; + cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.36.0"; sha256="14cyvxxwddcy499vczbk90njf7qxi2yrkasgajq81k5plbxfdd9w"; depends=[cnvGSA]; }; + colonCA = derive2 { name="colonCA"; version="1.42.0"; sha256="0nl07andj9bv9nql692f1gx2634l0bwd191van7p31z7bnsqr43i"; depends=[Biobase]; }; + crisprScoreData = derive2 { name="crisprScoreData"; version="1.4.0"; sha256="164cz37hsbbzrzscsz5d4mfw2m052bmgvyprfcg316y65bfxrngj"; depends=[AnnotationHub ExperimentHub]; }; + curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.12.0"; sha256="1sgfk9p8qxndv7rqnyqsrfw3hznp6xpgdq900wjn2z00zbr72z10"; depends=[]; }; + curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.16.0"; sha256="05a1jc0cn5hhphln6bd7mjvzglj3ajyvvnzqxy61dzwlrw6dc3ad"; depends=[ExperimentHub SummarizedExperiment]; }; + curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.16.0"; sha256="031v6l60ny1s2r765sdc8spf1kzaancmkg7h11l9f118qx3hznv0"; depends=[SummarizedExperiment]; }; + curatedBladderData = derive2 { name="curatedBladderData"; version="1.36.0"; sha256="0rcdigjl6ymb4gl57r3zi2q6xjzh284v92a0w0xhxx45gkgabppq"; depends=[affy]; }; + curatedBreastData = derive2 { name="curatedBreastData"; version="2.28.0"; sha256="11w73dnhf8bd671n8vnxwrla6b5kxr4pr38gqjl83gg45mf6hqc3"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; + curatedCRCData = derive2 { name="curatedCRCData"; version="2.32.0"; sha256="085dkxcm1vg8zfi9p29k8s0daadmv9hv5dvq1a1idmyyqjb6qqb2"; depends=[BiocGenerics nlme]; }; + curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.8.0"; sha256="19ibfp3b2z8z8mw0blrjrk2dplp7vckwvy6i1jfxfx3rwlia9c62"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; + curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.38.0"; sha256="0jgpp588n9ajda2l8652b20qpqv9w26jsdih6nk8ridvqzjpzbg0"; depends=[affy BiocGenerics]; }; + curatedTBData = derive2 { name="curatedTBData"; version="1.6.0"; sha256="017ii5x449wiv5lpbj6pjnb4aryik0a4fakxk0j5hllflvyq7yvf"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; }; + curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.22.1"; sha256="1rhdyp31qjaidgwxw8rs8i7czxikhnq2icgikcp2msbdqbjy2grr"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; + davidTiling = derive2 { name="davidTiling"; version="1.40.0"; sha256="0afbmfr4dh7jn7dyg5lk88p8465mli9h4lxk1zcj7xbrx7fy3bbj"; depends=[Biobase GO_db tilingArray]; }; + depmap = derive2 { name="depmap"; version="1.14.0"; sha256="06c3s8b60n6dzapli0aywn8h885771930c3vyckd3vlylzbga2ym"; depends=[AnnotationHub dplyr ExperimentHub]; }; + derfinderData = derive2 { name="derfinderData"; version="2.18.0"; sha256="0i9s8yp2bzjs2rl10x4qkji7pp3mmayah1gsnakpgvhzrjhnxv5i"; depends=[]; }; + diffloopdata = derive2 { name="diffloopdata"; version="1.28.0"; sha256="1wlnbgs3rj2zn0nspdzrqy78wvl3ddm1p639cd3qxhp19wl57s62"; depends=[]; }; + diggitdata = derive2 { name="diggitdata"; version="1.32.0"; sha256="1cc3csrlh5ib8sjl14slcxrkdqdkd4v5sb3l7va17bs6if3kihaf"; depends=[Biobase viper]; }; + dorothea = derive2 { name="dorothea"; version="1.12.0"; sha256="0ca6r65x9g22a8k4mm9na1ri5gzdb25gb5biqz3ai44v5q7abrdq"; depends=[bcellViper decoupleR dplyr magrittr]; }; + dressCheck = derive2 { name="dressCheck"; version="0.38.0"; sha256="0hijz7sdfh5fvkrwyy431004rw7ywmg5zslk7qji3j08f6s28r0h"; depends=[Biobase]; }; + dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.40.0"; sha256="00rl15x97v1jjfpxs5askmqjpax6xpn7dqzllwj27ar5h4bkn375"; depends=[GEOquery marray]; }; + easierData = derive2 { name="easierData"; version="1.6.0"; sha256="0c98qsj7z7pg2g6wy830gzs2yy3bflyy0ddx3yhwyvfa810inl0z"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; }; + ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.40.0"; sha256="1f08rq7r5v55x105d9g3j3v3hy4gh92fvpkqbrnkyfhb8lj28iha"; depends=[affy ecolicdf]; }; + emtdata = derive2 { name="emtdata"; version="1.8.0"; sha256="1iw4fi8pbbn4702zy9j8dm5iipqdn8r87v7clian15wys607r1nd"; depends=[edgeR ExperimentHub SummarizedExperiment]; }; + epimutacionsData = derive2 { name="epimutacionsData"; version="1.4.0"; sha256="13j3ndwk32pxcxhsw0svgrjxyl4p9fdjipzy20z2zw40z8gs3731"; depends=[]; }; + estrogen = derive2 { name="estrogen"; version="1.46.0"; sha256="0ngh4hq3r3cakcnf0n1zw3cpmskk49s5ccgdi6gif1y556qvriad"; depends=[]; }; + etec16s = derive2 { name="etec16s"; version="1.28.0"; sha256="0ig12q0n59f6p5x5lvf3cifb0psjlgl4hp31jpr8argp39nc3v4p"; depends=[Biobase metagenomeSeq]; }; + ewceData = derive2 { name="ewceData"; version="1.8.0"; sha256="128mkc8j5880j34mmshw3mwgl1gzwfrxpbb0s0m1lla4g01m046g"; depends=[ExperimentHub]; }; + faahKO = derive2 { name="faahKO"; version="1.40.0"; sha256="1f2dj0pgspm8wxfaan3rgpaix825n6hwfj569jh0q865ivz2rwk1"; depends=[xcms]; }; + fabiaData = derive2 { name="fabiaData"; version="1.38.0"; sha256="0jka59dkq44n68m1h4b1yw4v5zknmdkw48vndpbq6v6fna9dhzh9"; depends=[Biobase]; }; + ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.38.0"; sha256="19hdh516jwi4iqlv4g97g2d20xj4vkmca4z2wz34mgsk71dj69zl"; depends=[lumi]; }; + fibroEset = derive2 { name="fibroEset"; version="1.42.0"; sha256="1yhh0f241wghh2lmzr0qbsmw9sdpx7j69bi08spmzm7favbrmgq5"; depends=[Biobase]; }; + fission = derive2 { name="fission"; version="1.20.0"; sha256="0p60mn0dbjj7p2mqdnmpdx7k6nv01rmadipl6nmcqrz1iq3m3vd0"; depends=[SummarizedExperiment]; }; + flowPloidyData = derive2 { name="flowPloidyData"; version="1.26.0"; sha256="12c5gdsz7p7fhwhxdqg8gbj2nh2px16w5mc28crv3ggfawnna3ln"; depends=[]; }; + flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.12.0"; sha256="0z4y5bj77jh2xz8wb03vckfs9354c4njf3qqp6k8a4xxrikgl8wv"; depends=[]; }; + fourDNData = derive2 { name="fourDNData"; version="1.0.0"; sha256="08l866mm5wsr1cwhgzvz39ig09icngawpminj09nhdzcwbxiqqhj"; depends=[BiocFileCache GenomicRanges HiCExperiment IRanges S4Vectors]; }; + frmaExampleData = derive2 { name="frmaExampleData"; version="1.36.0"; sha256="0j3pp0iw5l6rq9hmx2a0r6py36wa659fml5y7gpbvg5m7y93375i"; depends=[]; }; + furrowSeg = derive2 { name="furrowSeg"; version="1.28.0"; sha256="0zzqc4yizrwpvhy254i5vdv3qw7bfy0l6sksgcvlh98xwrx5hgps"; depends=[abind dplyr EBImage locfit tiff]; }; + gDNAinRNAseqData = derive2 { name="gDNAinRNAseqData"; version="1.0.0"; sha256="19k0f4xssasiiihw3vyx65fs7gxkk3pqqcs7jb6pc6acjdfgmrwv"; depends=[BiocGenerics ExperimentHub RCurl Rsamtools XML]; }; + gageData = derive2 { name="gageData"; version="2.38.0"; sha256="0c1gvh24kgd3k9dh9syqffbdj9fi0awxdwndfdmwc2f3npnqy27b"; depends=[]; }; + gaschYHS = derive2 { name="gaschYHS"; version="1.38.0"; sha256="1g0ygk4dmzq2b4a3zsi0g9mdrb5n0zlmakgsdban24n4sqw08j3k"; depends=[Biobase]; }; + gcspikelite = derive2 { name="gcspikelite"; version="1.38.0"; sha256="0s6y32c1v750fqzchbzaahy5s0v7il9a4hyy4dk88sx4fxqy1idx"; depends=[]; }; + geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.36.0"; sha256="0aikgafkcc64qnsgzkbzba21inzzlvcrg5gqnbp10n5yl2vqnn22"; depends=[GenomicFeatures rtracklayer]; }; + genomationData = derive2 { name="genomationData"; version="1.32.0"; sha256="07ywg8399xshlvalxzl6g0ahicrw9cn32d9wzxqd956dqqxlrg70"; depends=[]; }; + golubEsets = derive2 { name="golubEsets"; version="1.42.0"; sha256="1x0i0y2y4s2bg6q5lvavphy690295zqs4gadp1c8pj0i5vhi2gr3"; depends=[Biobase]; }; + gpaExample = derive2 { name="gpaExample"; version="1.12.0"; sha256="14ic1j47r3nvv6aps211jrmnr0bjmym07r64wdggnmvim36ma10a"; depends=[]; }; + grndata = derive2 { name="grndata"; version="1.32.0"; sha256="0k0wzslgxbv88z0m0x7z113mhyvwcx1xirxlcg9b9dnqdqx3lzq9"; depends=[]; }; + h5vcData = derive2 { name="h5vcData"; version="2.20.0"; sha256="1axq8gb7989d2sknxgl4ig38klcvjgslvmykflqb5pnb0m9zhi87"; depends=[]; }; + hapmap100khind = derive2 { name="hapmap100khind"; version="1.42.0"; sha256="00ar3bry6np8krsdh3yrvj5in176850r9zpc95d3g6i04fa0cz71"; depends=[]; }; + hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.42.0"; sha256="1b9808njp0x7fz4d15dcnq1la3h4867df62wsjzn61nlqr20gs0s"; depends=[]; }; + hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.42.0"; sha256="1fg1l8m486wqxdh1v37jsv9w4f7mh01c3a750jk0b2jqypg37axx"; depends=[]; }; + hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.42.0"; sha256="144j6z1v19s0fjy94dxyhkd41ayk6jbf0x0jfslcbkxk2nj2jr02"; depends=[]; }; + hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.42.0"; sha256="1v7ba4h7rpg6f8qsh89sl49g6d4b32fj4mznmj5z2syxsm6c0yyl"; depends=[]; }; + hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.42.0"; sha256="063wb9snsn2dhvxs425pfy052pd3nyp1ggzczql6vfhjk92invk6"; depends=[]; }; + harbChIP = derive2 { name="harbChIP"; version="1.38.0"; sha256="1bl6px824qa6fy5mlyp9jc1xi5ig1n5disfwgql456fh6lq599cs"; depends=[Biobase Biostrings IRanges]; }; + healthyControlsPresenceChecker = derive2 { name="healthyControlsPresenceChecker"; version="1.4.0"; sha256="0lnfn1rdl782wx65vk08rjgrxzja61yjahhxcv5nks5rqsp12pr1"; depends=[geneExpressionFromGEO GEOquery magrittr xml2]; }; + healthyFlowData = derive2 { name="healthyFlowData"; version="1.38.0"; sha256="0sxjag25xganxhqdksqrjr831xhpinq7l00ayxffqgzpmlblmqfl"; depends=[flowCore]; }; + hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.38.0"; sha256="1v842kg28is91m3w6c8c84hqq1dvn2klgyklg2bd0qppwrc4arav"; depends=[]; }; + hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.20.0"; sha256="17qrw5v6cmpp821ciws8ixigl1a5c6chf6772nk6akkdd939n07g"; depends=[Biobase]; }; + hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.38.0"; sha256="0s28yvjm41yn4m4xr6d6mc0kyj0ijmd87sbhz1svx9xyackvgrb2"; depends=[]; }; + hgu2beta7 = derive2 { name="hgu2beta7"; version="1.40.0"; sha256="0gav1mhbj4h1dcyfhr4icpahpm2lmpxg3gjxfmbb4jxl78lr0dxp"; depends=[]; }; + humanStemCell = derive2 { name="humanStemCell"; version="0.40.0"; sha256="0ypgcw3j0mbdkxwlr8vzyp90i0a3y8z86a2865v45dgg7nhzw4hp"; depends=[Biobase hgu133plus2_db]; }; + imcdatasets = derive2 { name="imcdatasets"; version="1.8.0"; sha256="16dmzhwlqywiz7q893fj1vc6nq93bv2ssdnldrzrw9q1kmshrczr"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment SpatialExperiment]; }; + kidpack = derive2 { name="kidpack"; version="1.42.0"; sha256="0w40bwwziyz57gcc43gskv3zg86wqm1vz912kxr2rrhn8pjm0zq6"; depends=[Biobase]; }; + leeBamViews = derive2 { name="leeBamViews"; version="1.36.0"; sha256="0l8q3y34i1wbx2gvg8hsd23nylr86z4qldlq5qs7dalm37ifgjad"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; + leukemiasEset = derive2 { name="leukemiasEset"; version="1.36.0"; sha256="1m35qrhai1pzl4ca1nmi5gks1r9k36h82pfhlx1d0c0amyamyy91"; depends=[Biobase]; }; + lumiBarnes = derive2 { name="lumiBarnes"; version="1.40.0"; sha256="1bl9j5mn9rjjn11xxlxihdpp5njznmi95r2fddjrbgq230nj83a0"; depends=[Biobase lumi]; }; + lungExpression = derive2 { name="lungExpression"; version="0.38.0"; sha256="02xmln921ak8xx040pl4hvm4dhqzvmgynmqy7a37lfccg3zvrc0q"; depends=[Biobase]; }; + lydata = derive2 { name="lydata"; version="1.26.0"; sha256="0i6xy6wczw6nhj2g07l3z39q8s2fws71gh502cdfg6d30x9ad4i5"; depends=[]; }; + mAPKLData = derive2 { name="mAPKLData"; version="1.32.0"; sha256="1p8q2swiypb3a5q4c6j9y28ddwkj5w6wqm0xsjw4rbvcb7dsbr4c"; depends=[]; }; + mCSEAdata = derive2 { name="mCSEAdata"; version="1.20.0"; sha256="1absxkpy48gi8rdbb97vwd2g0fqb2r07plx6cg9paj3a8gb0q3ba"; depends=[]; }; + macrophage = derive2 { name="macrophage"; version="1.16.0"; sha256="02g56sxkj83bp9j2089a5mw342cp8zx55dps8wah0jyb93rh5isg"; depends=[]; }; + mammaPrintData = derive2 { name="mammaPrintData"; version="1.36.0"; sha256="1m9wnj5yg6xsglsg2qsx3igdy7a0wp9zkgpf8ycwgr425dm8fwyi"; depends=[]; }; + maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.44.0"; sha256="1qpm40z3sl308b484nn5zkb2vnywrz7br5a070g3f63302hj306s"; depends=[]; }; + marinerData = derive2 { name="marinerData"; version="1.0.0"; sha256="0rsqz0991ykdw8l7yq1sixh6ddvzg0pnn1gyp9mwi2j4vja0w3qc"; depends=[ExperimentHub]; }; + mcsurvdata = derive2 { name="mcsurvdata"; version="1.18.0"; sha256="1qxa32vmc5zqdr48f26bfpxl3aask9isvas9wwc9dcbhivn35d2y"; depends=[AnnotationHub Biobase ExperimentHub]; }; + metaMSdata = derive2 { name="metaMSdata"; version="1.36.0"; sha256="1npbyssyvc4z6agb9m6pb1qkml25kqiirg7fpnc4saa586s2ifk8"; depends=[]; }; + methylclockData = derive2 { name="methylclockData"; version="1.8.0"; sha256="0ghl702slnf0hayq54a7957r3d915hqn67p0bwqjxhx3bdj39n47"; depends=[ExperimentHub ExperimentHubData]; }; + miRNATarget = derive2 { name="miRNATarget"; version="1.38.0"; sha256="0gjhq9wiswxw75a6vm1s9l9jnhlfxp35zz85cwxg6xvcz94w4rx2"; depends=[Biobase]; }; + miRcompData = derive2 { name="miRcompData"; version="1.30.0"; sha256="1qn57qvysmpxq1k4zsv7b45a8bmi9snvkwwng9s267440w0rl0yz"; depends=[]; }; + microRNAome = derive2 { name="microRNAome"; version="1.22.0"; sha256="17dmg9lbf3j305lgyfwazqyxwlkvqxzyzfilq97kki894qyfv85l"; depends=[SummarizedExperiment]; }; + microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.8.0"; sha256="1hlh06mpcm92j59cng2zg05qc5jsc7f57n09g5rm1kywn07gqcl9"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + minfiData = derive2 { name="minfiData"; version="0.46.0"; sha256="0q51zc4v785r10d6rcgnh8lwrxbh5k7gz5b7ps5fq4lsrg0ly8fq"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; + minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.26.0"; sha256="0r203iwkfhl6xkpahml98ccm7np16kl4c9jgx5rbi1697smaxwvb"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; + minionSummaryData = derive2 { name="minionSummaryData"; version="1.30.0"; sha256="15l8wd5bx43hljvsa0g7990amkmcjgdl6z1kkxcwf532ds2ixsv4"; depends=[]; }; + mosaicsExample = derive2 { name="mosaicsExample"; version="1.38.0"; sha256="16rgf7p0dvp5yh56gs1vwcpf57fp3dzcgznwzm8c0mjrxyqfckzz"; depends=[]; }; + mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.38.0"; sha256="0msvj4342g9cnks278jqjaw6jv5bs18briigbix0sglxprqi9s6m"; depends=[]; }; + msPurityData = derive2 { name="msPurityData"; version="1.28.0"; sha256="0r8r108gfin8xaznwfg70ysym6ay4pyy7wg01r0s29iny7h6b625"; depends=[]; }; + msd16s = derive2 { name="msd16s"; version="1.20.0"; sha256="0h5wm56g5ckdkayiqn8jn9p6r87sfpzbl6jj5yxn1rfx06cqd1f5"; depends=[Biobase metagenomeSeq]; }; + msdata = derive2 { name="msdata"; version="0.40.0"; sha256="0p3msawa9xxzjpa7wrwbss8p1caaq8xinzxv26s0dxgdllq24s02"; depends=[]; }; + msigdb = derive2 { name="msigdb"; version="1.8.0"; sha256="1kgsqg1d5r852qas09g6fs0pcmk6jgbb6g983v6iqw19qsiy6jby"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; + msqc1 = derive2 { name="msqc1"; version="1.28.0"; sha256="1c2gslrmzndylag0s9ajdkf4cgfcnfxi1qcqns8zydl28f3jp7kh"; depends=[lattice]; }; + mtbls2 = derive2 { name="mtbls2"; version="1.30.0"; sha256="0k7d3636av6d6mnsb09grzldlhqqzg98dxc5sgghykp03k4mdayk"; depends=[]; }; + muscData = derive2 { name="muscData"; version="1.14.0"; sha256="14j6qy5fi2gyc76mhgrv231srw7s1ljjspmg4r2v7ngwh0klz0bk"; depends=[ExperimentHub SingleCellExperiment]; }; + mvoutData = derive2 { name="mvoutData"; version="1.36.0"; sha256="1hjqgqwg35d4rg920afgfg7ql6w5inr83hycml3lprzch06nrfzk"; depends=[affy Biobase lumi]; }; + nanotubes = derive2 { name="nanotubes"; version="1.16.0"; sha256="1k1j17km2qwc22mn8mskfm895kqy42aazajpch99pi1i892scp4x"; depends=[]; }; + nullrangesData = derive2 { name="nullrangesData"; version="1.6.0"; sha256="114a3pi88p647z2b9k7h9mal1hry5vmq6d8di5x3qhrc8dk2s707"; depends=[ExperimentHub GenomicRanges InteractionSet]; }; + oct4 = derive2 { name="oct4"; version="1.16.0"; sha256="18vrx4h6czh03hm5q0gcs3bhyw780shmy78a5h3jldr04wkd5avk"; depends=[]; }; + octad_db = derive2 { name="octad.db"; version="1.2.0"; sha256="01wfapq1qsh3wirkl4j1bx1jk1abld19945w6cyz18n66gf4l70j"; depends=[ExperimentHub]; }; + optimalFlowData = derive2 { name="optimalFlowData"; version="1.12.0"; sha256="1ipn3dhikl02jjr3ifg6wqjgx6x844z3qzj8c41zf6sn6xrmx2ax"; depends=[]; }; + pRolocdata = derive2 { name="pRolocdata"; version="1.38.0"; sha256="0mylaiwx2k364qlqqmb8fmc8r8m9d2qyjw58pg9jcbdy9nzwsv7m"; depends=[Biobase MSnbase]; }; + parathyroidSE = derive2 { name="parathyroidSE"; version="1.38.0"; sha256="18w0gi7950wwbx68cn0hq5q57pga5n7b6gga1p8vaxs0fjca4fi9"; depends=[SummarizedExperiment]; }; + pasilla = derive2 { name="pasilla"; version="1.28.0"; sha256="1bqmz71sd9fdlr5yayqvc65mi4rhgakzqwlcs5jryb2qnmyrczhm"; depends=[DEXSeq]; }; + pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.38.0"; sha256="123dr64a1a1xw9z64x7sfwd85qxffmiv3lydimlbay121sc0kv2m"; depends=[]; }; + pcxnData = derive2 { name="pcxnData"; version="2.22.0"; sha256="16mq3h8gr71cs7xi90zqaybvp92479bk8qyk5pylidfp5x72y8zr"; depends=[]; }; + pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.38.0"; sha256="0ppvjrdqj8aa90b10hwcr1ihpgyjik8pbhqinaqxq5bvxw0826pw"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pepDat = derive2 { name="pepDat"; version="1.20.0"; sha256="1v0kzvxy21pl8fs05irdhvgxdicav0i00m966x8ra21ixczi1dfw"; depends=[GenomicRanges]; }; + plotgardenerData = derive2 { name="plotgardenerData"; version="1.6.0"; sha256="17aiha2xi7d8jyrnmdyakxd9gh2pcq9rb97gr1w87cjifv64ipn4"; depends=[]; }; + prebsdata = derive2 { name="prebsdata"; version="1.36.0"; sha256="11j6vz505d8pa9vx64rwask3r89wsv6r7f646lahzw6i4ingpxz4"; depends=[]; }; + preciseTADhub = derive2 { name="preciseTADhub"; version="1.8.0"; sha256="1nw0f58y6h207sxnhfkqchrnsshkf4wf304ygc2iv7i9xwz1klg5"; depends=[ExperimentHub]; }; + prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.28.0"; sha256="0nb1rn5v4w6n1vxpg88cyxfw11lw4q5lipm0lxn076492lqzyl56"; depends=[Biobase]; }; + prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.28.0"; sha256="0apwvr094ka9vars72ikcl8n9j28fnsgxjybmffcg3daindk5980"; depends=[Biobase]; }; + prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.28.0"; sha256="0jsmrizdczhz7nz231rdj1cjfd3ddadpkqyknm53im3gb5k047kr"; depends=[Biobase]; }; + prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.28.0"; sha256="09bcf4gwrl217xxwp3x2cyl8h9ynkz38v9lvidyf5646rm2mga0d"; depends=[Biobase]; }; + prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.28.0"; sha256="0gl9l7nzccdfpa5lbvrhv41r6iy97kz82wrd9d04mgykapw4c0xm"; depends=[Biobase]; }; + ptairData = derive2 { name="ptairData"; version="1.8.0"; sha256="0nr2v48iqfw7x8rv1vd7lrlcjnh7jzvwnyfhvvjq6gsc38bij2ln"; depends=[rhdf5 signal]; }; + pumadata = derive2 { name="pumadata"; version="2.36.0"; sha256="1409lc2g2vrr4bfd26d0rppwd577hv6qdvfxw3m4q6w8xvzjc3lg"; depends=[Biobase oligo puma]; }; + pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.14.0"; sha256="1bldyvjsv5wwzasg9sbsivyi7m2ypc17mqjglsl22fjkykm92h4s"; depends=[ExperimentHub]; }; + qPLEXdata = derive2 { name="qPLEXdata"; version="1.18.0"; sha256="1zzrsj7xdp0dzv1irj8gkar6a815253lna79vcffq7i01nx62whr"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; + rRDPData = derive2 { name="rRDPData"; version="1.20.0"; sha256="0rby7h4xzsxjrs8s2vzfapwh01rxddickg0cxj1n0bpirmc1bn6i"; depends=[rRDP]; }; + rcellminerData = derive2 { name="rcellminerData"; version="2.22.0"; sha256="0gk037ksn7wbwbp9nvgd5kacy671fwy13sscbv73ixmxkavkn5ls"; depends=[Biobase]; }; + restfulSEData = derive2 { name="restfulSEData"; version="1.22.0"; sha256="0lyry50izvnjqywsxsrrckbdw4ib88jphwj2yxyl0aapgdcxgzra"; depends=[DelayedArray ExperimentHub HDF5Array SummarizedExperiment]; }; + rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.38.0"; sha256="0bnrkq6impb61fj6991290bji5dba4j11favykws668lj113wk9p"; depends=[]; }; + sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.24.0"; sha256="0rm9q82iiii2rnq9pqy7a0c7pbw2vwwr5132vzvsr5x7q2xfwf8v"; depends=[SummarizedExperiment]; }; + scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.6.0"; sha256="0y9ykfl20ffww51n45i8ljg3f2jz0lc20qp81q0q3rwy7wjz28iv"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; }; + scMultiome = derive2 { name="scMultiome"; version="1.0.0"; sha256="0ddfr9m1is9gia9gnfgw4crzna8c1w21pzwcvb5zhlyc5qi59pqb"; depends=[AnnotationHub AzureStor checkmate DelayedArray ExperimentHub GenomicRanges HDF5Array MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scRNAseq = derive2 { name="scRNAseq"; version="2.14.0"; sha256="0ch3fg4vzzqnk6l4m1clfgmh6jighqlnqzwh7w66hlkyjknpbbjd"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scTHI_data = derive2 { name="scTHI.data"; version="1.12.0"; sha256="1pfglyb12k5qv2xqbkzn87b4gg3v854mkw81k0wchmvqzr5v5m9h"; depends=[]; }; + scanMiRData = derive2 { name="scanMiRData"; version="1.6.0"; sha256="13krdxff0xwv179swy2dqfgfzpnp41d2khxm002hj5h4ra48p4gz"; depends=[scanMiR]; }; + scpdata = derive2 { name="scpdata"; version="1.8.0"; sha256="09xncwdky121lsz09k24xdy7qwmcrkx3685qcfb34gwszff9m5d3"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; }; + seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.32.0"; sha256="0a9jfkdx26ivzmmhwpn8qw5v2vq2mvnz43ri1y22w3248dhl4fzc"; depends=[]; }; + seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.36.0"; sha256="18z9f7bmwgwz0s5q2g5ggrfpikwkwjwj8vpllbfv0nw2ixi4c0vj"; depends=[]; }; + seqc = derive2 { name="seqc"; version="1.34.0"; sha256="0dfg8br36avrk1wryxygq1crpfafy3y2k64mxak6333lpl6ghrfc"; depends=[Biobase]; }; + serumStimulation = derive2 { name="serumStimulation"; version="1.36.0"; sha256="1a5r0qb2mxznc5y324jb6v7n72bwz055h4qabf0y662aqsfbrwh8"; depends=[]; }; + sesameData = derive2 { name="sesameData"; version="1.18.0"; sha256="1fvxs5n6bj2j0k3vgnaiksshkaxw7fmx6k22rjd3fsqg3cz60fm6"; depends=[AnnotationHub ExperimentHub GenomeInfoDb GenomicRanges IRanges readr S4Vectors stringr]; }; + seventyGeneData = derive2 { name="seventyGeneData"; version="1.36.0"; sha256="1bfz4jsh53w3fha354yk7405i8rv4gx1f9p9zskrlrn76m7mbfgy"; depends=[]; }; + shinyMethylData = derive2 { name="shinyMethylData"; version="1.20.0"; sha256="03apywnbp4j3dhaba1ardw7wmr75py2lbjm9gfmn624fcvvs5zsm"; depends=[]; }; + signatureSearchData = derive2 { name="signatureSearchData"; version="1.14.0"; sha256="1bs3vqj67ppwl9rdkkzh2a65cj0lmss22m2gmahdj5903sdm8fbd"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5]; }; + simpIntLists = derive2 { name="simpIntLists"; version="1.36.0"; sha256="1jma1gnpm8v345li6k4brjr29x5x06f33x50s6ashx28lwzf0hwg"; depends=[]; }; + spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.6.0"; sha256="0b3523gw7la0li9cf4p47kv8xc7r3k28dhmc816n17rrn0iqcxlz"; depends=[ExperimentHub SummarizedExperiment]; }; + spatialLIBD = derive2 { name="spatialLIBD"; version="1.12.0"; sha256="04g0qjxccws1pim89kb4mpxh6n26snmrh7khfp89wxkx52bj8yrd"; depends=[AnnotationHub benchmarkme BiocFileCache BiocGenerics cowplot DT edgeR ExperimentHub fields GenomicRanges ggplot2 golem IRanges jsonlite limma magick Matrix paletteer plotly png RColorBrewer rtracklayer S4Vectors scater scuttle sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment statmod SummarizedExperiment tibble viridisLite]; }; + spqnData = derive2 { name="spqnData"; version="1.12.0"; sha256="1l63w4ddjqp0g9bkwhyaggj9j3iva0xvwnnv5jc51dzqgg4kyffx"; depends=[SummarizedExperiment]; }; + stemHypoxia = derive2 { name="stemHypoxia"; version="1.36.0"; sha256="15mw35q2paq5wmxix9k685xxrbm0x0cn80nvk3i3mw82h829jmnm"; depends=[]; }; + stjudem = derive2 { name="stjudem"; version="1.40.0"; sha256="13c6p9fp2z5d3imwn31baba8xf9zwchcccrrg6qbaafsj2ajw8il"; depends=[]; }; + synapterdata = derive2 { name="synapterdata"; version="1.38.0"; sha256="09jd57gw331zzb55qwb5gr11kd5sn5dvwrd9abaf1wgf3ykhkb1m"; depends=[synapter]; }; + systemPipeRdata = derive2 { name="systemPipeRdata"; version="2.4.0"; sha256="01xj4n4n3j0h14ijh86gnnvb004hgnd8j4mv4ds8gcl17j8n3zj1"; depends=[BiocGenerics Biostrings jsonlite remotes]; }; + tartare = derive2 { name="tartare"; version="1.14.0"; sha256="18p33a76x39zyx4yracpxira5hr7kibryp52dwy4w6wmhdid6kc8"; depends=[AnnotationHub ExperimentHub]; }; + timecoursedata = derive2 { name="timecoursedata"; version="1.10.0"; sha256="0s60dczz2bkagh8s2xy1lyq08am3mqzsimxh4j3arr2q6vkfip83"; depends=[SummarizedExperiment]; }; + tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.38.0"; sha256="0dnf2yqdjkc20sydiskz2c1lxlfrihyjmiw0wsz945v8sxfb2l38"; depends=[]; }; + tinesath1probe = derive2 { name="tinesath1probe"; version="1.38.0"; sha256="159pczl31r2gb6cpkglqkcqjq9sq06m0f0h6c7p6bsgmi5qji9dv"; depends=[AnnotationDbi]; }; + tissueTreg = derive2 { name="tissueTreg"; version="1.20.0"; sha256="1wz8qz0znvf2nk2im270djwbgq6b4jhx6qmx3chmibriszgs3vxm"; depends=[]; }; + tofsimsData = derive2 { name="tofsimsData"; version="1.28.0"; sha256="0zdb54103i17ns1z2rwgqwnbbdaysfkw7dvnb0jny1zb4a10mzhi"; depends=[]; }; + topdownrdata = derive2 { name="topdownrdata"; version="1.22.0"; sha256="0k9mpfsrfnyjwlxkv4c58pnwwf93qp50c2s5azrcfncx2z3kb6hn"; depends=[topdownr]; }; + tuberculosis = derive2 { name="tuberculosis"; version="1.6.0"; sha256="1lqvypy9xd4qqvq5impfai6l09mpx4m0ypnd3h6m493ymqgvf2gz"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.38.0"; sha256="11jiq5irarmmkhxng8xxhagjrcz2myf9hgyqqkswfm9ffm5yc618"; depends=[Biobase]; }; + tximportData = derive2 { name="tximportData"; version="1.28.0"; sha256="1gnzaifkxiawp902bpdkrxnk892vvxrg2jqxz2cfjaaxzfh12fxq"; depends=[]; }; + vulcandata = derive2 { name="vulcandata"; version="1.22.0"; sha256="0ll5mi8flpisg7ib0sv3w4ndmlkypq3rm3cy55vk8bsl5j37fc2s"; depends=[]; }; + xcoredata = derive2 { name="xcoredata"; version="1.4.0"; sha256="023xj8v628v2sddwmv24vsqjgfczgiqvkfqfxmlnz00jbb6f8vfs"; depends=[ExperimentHub]; }; + yeastCC = derive2 { name="yeastCC"; version="1.40.0"; sha256="0k15h5jk3b14d46nf3rrh7jkdf4b0mr6z2l41xy83lhhjkrs543l"; depends=[Biobase]; }; + yeastExpData = derive2 { name="yeastExpData"; version="0.46.0"; sha256="1k0k5cvfyx82p91qkpsxdb1rzdnz74ikna6pd8rc41fmnwbls3ph"; depends=[graph]; }; + yeastGSData = derive2 { name="yeastGSData"; version="0.38.0"; sha256="0fjppy226cdg97wb8vfrsfmnv7mmygm8slk546r4avn4r5vim7i2"; depends=[]; }; + yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.36.0"; sha256="10iir6jkvzk081mr8snad250rnsfmchrq12har97y4gg12c2928v"; depends=[]; }; + yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.38.0"; sha256="0z9x93lc5sfashiclmd7dz7mvb4kp1dc0g8nqf68jspahxgzf1cs"; depends=[]; }; + zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.20.0"; sha256="0wcmawzc5gc6s6fvwy490ifhhbfzdzii05719in080m0yv2bc74h"; depends=[]; }; ABAData = derive2 { name="ABAData"; version="1.24.0"; sha256="1wgniq7ibvjj6dx63ixr3i5yclqmg94qpifzfbzzn9yjj3wnikzr"; depends=[]; broken = true; }; DREAM4 = derive2 { name="DREAM4"; version="1.31.0"; sha256="11ypc84agvq0q0v7bk0b25cm48awxay5hhhjd95gw9s7jk196i2p"; depends=[SummarizedExperiment]; broken = true; }; MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.30.0"; sha256="14mwg96g7aza81vc3hpmb41scmygl8vnsi6s8p48c8v92106asmb"; depends=[affy Biobase]; broken = true; }; MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.13.0"; sha256="1jzypgfmd6d0fdj9ycp4jwihjpxyinr5kwi2x2dg2z6hvxx97gb8"; depends=[]; broken = true; }; + RNASeqRData = derive2 { name="RNASeqRData"; version="1.16.0"; sha256="17c5fvyqxdsg7wl0hy0i28z0kf2lmjg36lfrmsv51kzklsc6ykrp"; depends=[]; broken = true; }; brainImageRdata = derive2 { name="brainImageRdata"; version="1.12.0"; sha256="072x7yn1ambf6hfpir6qdxl8bybv64blpbi1jdp0bvqlk66zs7zv"; depends=[ExperimentHub]; broken = true; }; + gatingMLData = derive2 { name="gatingMLData"; version="2.38.0"; sha256="1dhm48nrh1y0x6p50045cn6f21bg35i0b4z7bjymn9aw0n9r5fyk"; depends=[]; broken = true; }; + plasFIA = derive2 { name="plasFIA"; version="1.26.0"; sha256="0vbqjbfc75pb2gk49sl6aihmvcc38ylngyr1bgdvdxr0xh11imv0"; depends=[proFIA]; broken = true; }; ppiData = derive2 { name="ppiData"; version="0.34.0"; sha256="10xbp12wim5kj1h2vkxn9x22fd92s2038w653y81jwbh2hyidybf"; depends=[AnnotationDbi graph]; broken = true; }; tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub knitr]; broken = true; }; } diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index 4db6b91ae156b..949965e5fa565 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -4,2236 +4,2315 @@ # Rscript generate-r-packages.R bioc >new && mv new bioc-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.16"; }; +let derive2 = derive { biocVersion = "3.17"; }; in with self; { - ABSSeq = derive2 { name="ABSSeq"; version="1.52.0"; sha256="1ypd0wg3k2zzl0zf15c16dc38hfpsm5vv4x0x0yf90x0f8b6jpaz"; depends=[limma locfit]; }; - ABarray = derive2 { name="ABarray"; version="1.66.0"; sha256="02rjxzbrzphl28z8zpgw3gavzlzlx71n5ld8sb3im6xpn81ykvfh"; depends=[Biobase multtest]; }; - ACE = derive2 { name="ACE"; version="1.16.0"; sha256="12gmdkzm9wnrq793xqvw3mzwmmsm1vkh36llapr7m7q4dmcfgxr0"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; }; - ACME = derive2 { name="ACME"; version="2.54.0"; sha256="0prcaxqmzm4hhpv228xh0glhm166gs17sa9h4lqrm03pwrjrdqdw"; depends=[Biobase BiocGenerics]; }; - ADAM = derive2 { name="ADAM"; version="1.14.0"; sha256="1s1mzjxqld8gllfh6z9kg30klb4y1jrkrif7vwr18c0mhamf47a6"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; - ADAMgui = derive2 { name="ADAMgui"; version="1.14.0"; sha256="1ks799kgdmlxn5iyj6rzj04cm28klivclz3bg6bc4wad2q7h4ra9"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; - ADImpute = derive2 { name="ADImpute"; version="1.8.0"; sha256="0wrprxd91vi4wwh9wixhx1ppbjsb56r4kcxgqz8w6ahr3z2387im"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; }; - ADaCGH2 = derive2 { name="ADaCGH2"; version="2.38.0"; sha256="0g9x3lnr56035wq9ijdcri4sz5pwj8184yxm415gmsxrii9xvpfd"; depends=[aCGH bit cluster DNAcopy ff GLAD snapCGH tilingArray waveslim]; }; - AGDEX = derive2 { name="AGDEX"; version="1.46.0"; sha256="0yvdx32yr4mv7dl5ycpbxhrkm6csrr7k3398ggjavdcfhz54dgr8"; depends=[Biobase GSEABase]; }; - AIMS = derive2 { name="AIMS"; version="1.30.0"; sha256="1civ4a14ynccv6xs27fm95fw6254l1z0q37546ivyv2mhbz0d2i1"; depends=[Biobase e1071]; }; - ALDEx2 = derive2 { name="ALDEx2"; version="1.30.0"; sha256="0585s5pb8zr9il1vhxw9vjzzajmdcjmf9zz3zlc5vpczd3fnzfkf"; depends=[BiocParallel GenomicRanges IRanges multtest Rfast S4Vectors SummarizedExperiment zCompositions]; }; - AMARETTO = derive2 { name="AMARETTO"; version="1.14.0"; sha256="06j75c4j71fkkw5s52nbzb3k084y2f4v4h3js9dgsxxrd6jkzfz9"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; }; - AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.24.0"; sha256="0zzl5dv64yhdivsm2pgsfjikygib9pkfiv34h1lnmqrj6yivvvw8"; depends=[]; }; - ANCOMBC = derive2 { name="ANCOMBC"; version="2.0.2"; sha256="0dlinv4vhxgni8ygzvfw8pbc6d1v9x5chhrpxblhs2c65bkgyxz5"; depends=[CVXR DescTools doParallel doRNG dplyr emmeans energy foreach Hmisc lme4 lmerTest magrittr MASS mia nloptr Rdpack rlang rngtools S4Vectors SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment]; }; - ANF = derive2 { name="ANF"; version="1.20.0"; sha256="0yfwvgx7144r894fr13sx4gyyq6ljh7y734wx74sb7q80cl2gs1j"; depends=[Biobase igraph MASS RColorBrewer survival]; }; - APAlyzer = derive2 { name="APAlyzer"; version="1.12.0"; sha256="1iaz9ircfh5x3z5pibn5vnd4lbbr7m5ypk97xnizn22z41aqrxn3"; depends=[DESeq2 dplyr GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HybridMTest repmis Rsamtools Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; }; - APL = derive2 { name="APL"; version="1.2.0"; sha256="1i02m70aa67m1h81q9lz3qmc52sc6cjicgxd9krqm9r6fpgcf22g"; depends=[ggplot2 ggrepel magrittr org_Hs_eg_db org_Mm_eg_db plotly reticulate rlang Seurat SingleCellExperiment SummarizedExperiment topGO viridisLite]; }; - ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.38.0"; sha256="14mffjsy7cwpa2xf8zdqwdk6mnfj3lf06y8s59ndh531b45nw5wc"; depends=[ARRmData]; }; - ASAFE = derive2 { name="ASAFE"; version="1.24.0"; sha256="1q4i33rw1qb8bnvkl06izl4nyl9lzgwy8rwrmvbrz1c384pmy8yj"; depends=[]; }; - ASEB = derive2 { name="ASEB"; version="1.42.0"; sha256="1kr6l2ma7wzy8i9dn86zx927yvx1l4bnkxhv97ra3sh5vr6m8ywa"; depends=[]; }; - ASGSCA = derive2 { name="ASGSCA"; version="1.32.0"; sha256="12wap8xbq6xl7p430yd9yy5kdhs15n7nmv2h3k9bsi0f4m6md02i"; depends=[MASS Matrix]; }; - ASICS = derive2 { name="ASICS"; version="2.14.0"; sha256="0c2b3gdza58vqhharhw8967p2w2knnrm5s2svvnnjbf67qbg45b7"; depends=[BiocParallel ggplot2 glmnet gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; }; - ASSET = derive2 { name="ASSET"; version="2.16.0"; sha256="13zwnjap4y0s3qqv10mv2i4mqan9nmkm2l29i448h1j3wwfq18j2"; depends=[MASS msm rmeta]; }; - ASSIGN = derive2 { name="ASSIGN"; version="1.34.0"; sha256="0y1j9j9g8mlrrxz8ggi45lb9gvdsmcq94c0pzj8y8lm7hmsmixwg"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; - ASURAT = derive2 { name="ASURAT"; version="1.2.0"; sha256="1n5wvdyf80c0yhw8mxzkawxk0bkvy3qysxb9vgw1pj75nrp7ml7i"; depends=[circlize cluster ComplexHeatmap plot3D Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; - ASpediaFI = derive2 { name="ASpediaFI"; version="1.11.0"; sha256="13jny6ca8hdf269z37baaggfs7jss00ln09apn42pj411g3p7nms"; depends=[BiocParallel biomaRt dplyr DRaWR e1071 fgsea GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz igraph IRanges IVAS limma Matrix reshape2 ROCR Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; - ASpli = derive2 { name="ASpli"; version="2.8.0"; sha256="0gwp5ijpxjy6hd1090cmwbfrfac1qqrzxc06n1j89c0va7wm9l4k"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr UpSetR]; }; - ATACCoGAPS = derive2 { name="ATACCoGAPS"; version="1.0.0"; sha256="1n389l4b17j6q36irpd3gbdn5hlfk47315rx30jmsiwyid17qm4j"; depends=[BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm10 chromVAR CoGAPS dplyr fgsea GeneOverlap GenomicFeatures GenomicRanges gplots gtools Homo_sapiens IRanges JASPAR2016 motifmatchr msigdbr Mus_musculus projectR rGREAT stringr TFBSTools tidyverse]; }; - ATACseqQC = derive2 { name="ATACseqQC"; version="1.22.0"; sha256="12ggi2dzf8qyzjrxprvk099f61yrabg2d84iqnjxzrn77v6z19b2"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; - ATACseqTFEA = derive2 { name="ATACseqTFEA"; version="1.0.1"; sha256="0p7cs8a6ywh4k80q3hjbh8gd3599209li8igzkilaa4z7gvhj0fi"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggrepel IRanges limma Matrix motifmatchr pracma Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; - AUCell = derive2 { name="AUCell"; version="1.20.2"; sha256="1qb13qd5xzgrpx6jlg3ll0ff5spz3y06ji31vvqzm759almg2w3s"; depends=[BiocGenerics data_table DelayedArray DelayedMatrixStats GSEABase Matrix mixtools R_utils shiny SummarizedExperiment]; }; - AWFisher = derive2 { name="AWFisher"; version="1.12.0"; sha256="1psbxxrwb6mk2jwjw963vwdczb3i5590rcm7hk43kpiw45i1q1j9"; depends=[edgeR limma]; }; - AffiXcan = derive2 { name="AffiXcan"; version="1.16.0"; sha256="1jsdl477qhsq3rpqvgdm7navr4izpppfkiw0fvlhxwspgp3fjs6c"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; - AffyCompatible = derive2 { name="AffyCompatible"; version="1.58.0"; sha256="1bg7iqasvfsgd9x3ykgpblqnz1q06g3ifmzj4jf2kn8kxj63wfbl"; depends=[Biostrings RCurl XML]; }; - AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.44.0"; sha256="1n6x2c0h6xmcll7mxq4n1y8ahqfmba8ppdcrjk9hf3nh5wngprkz"; depends=[affy]; }; - AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.48.0"; sha256="0q3hynyd4dhhh1a2b27y3rrshgvxfwv17k7yabh6g4pc12c33mf7"; depends=[affy affycoretools Biobase limma preprocessCore]; }; - AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.36.0"; sha256="0zn8pp4pl5wr957mf6agjpn61f9qpnjx0nbxb5wnbr40672x0263"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; - AlphaBeta = derive2 { name="AlphaBeta"; version="1.12.0"; sha256="000apg879li9wkbyrl8cm73z6h0xasqp41h9ir9hywy2v38rmc5b"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; - AlpsNMR = derive2 { name="AlpsNMR"; version="4.0.4"; sha256="19j97qsa1vnxw05dlllbwzdap0xgnmgxyqbi5dy8w2ppwdzxgsfv"; depends=[baseline BiocParallel cli dplyr fs future generics ggplot2 glue htmltools magrittr matrixStats mixOmics pcaPP purrr readxl reshape2 rlang rmarkdown scales signal speaq stringr tibble tidyr tidyselect vctrs]; }; - AnVIL = derive2 { name="AnVIL"; version="1.10.2"; sha256="1j7n8c47j3njd5rnlrj8bkn4q5z7jpm0c9rdq1mlwd2i1yy9fz9b"; depends=[BiocManager dplyr DT futile_logger htmltools httr jsonlite miniUI rapiclient rlang shiny tibble tidyr tidyselect]; }; - AnVILBilling = derive2 { name="AnVILBilling"; version="1.8.0"; sha256="13qcp2s012ai44dkddk71ga44y87jnl0vljyd93lj1dlh8nw7c00"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; - AnVILPublish = derive2 { name="AnVILPublish"; version="1.8.0"; sha256="1i5zf7pyrzi6v13gpscmdb5qdb5gknicc8fk9s9nmsl1wpj6wlsw"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; }; - Anaquin = derive2 { name="Anaquin"; version="2.22.0"; sha256="08y2syaacy15rxcf3x2r3906kfm58fkx7ainaqvy5inlc9f670j5"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; - AneuFinder = derive2 { name="AneuFinder"; version="1.26.0"; sha256="154cg63n7h9h5jkj00aqf0hzbmmjg16bzvvk50fyixwq0a4q1j00"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust reshape2 Rsamtools S4Vectors]; }; - AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.60.2"; sha256="1c7f2vgdnh99zp83pvmghb7l0rihdijlhdj6ff992h7wrrha8lhg"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; - AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.22.0"; sha256="0m16kfssxbblf03ykawkmqa038cl90prhb23k6y88g2hwm00wynk"; depends=[GenomicRanges lazyeval]; }; - AnnotationForge = derive2 { name="AnnotationForge"; version="1.40.2"; sha256="1ab7nl9zrlhlkwjrjr69zqq5hy9a8rp457hcr075n8qm5r5lf6wd"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; - AnnotationHub = derive2 { name="AnnotationHub"; version="3.6.0"; sha256="1hk02q6mwx49khbhydndfa1qry8ylhmwz2dff8845a510hm0di7n"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; - AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.28.0"; sha256="0mcx09kcxccw2gkf4c3w7sxgb7v3gwbvahvx9wgq8f93q85yzg95"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; - ArrayExpress = derive2 { name="ArrayExpress"; version="1.57.0"; sha256="1fzi951mjc4kbkkvlfvwlfrpfnjckkmw4xz4m5dapy1z2jkgp8w6"; depends=[Biobase limma oligo XML]; }; - ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.47.0"; sha256="0fndc7xifzj2wq8si8q8zjjkly5ckgr28jrm3m887s7kivbvjzvv"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer Rhtslib rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; - AssessORF = derive2 { name="AssessORF"; version="1.16.0"; sha256="125qkjsjyxp6zk3nzfamakyfgm7wd7w9vv1vn7xyyylpqpa8rpml"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; - BAC = derive2 { name="BAC"; version="1.58.0"; sha256="00dkhns9n1x4wmlxjcw75h7iwwk37zlv1c2fi0g1mmsw1xvdjzp6"; depends=[]; }; - BADER = derive2 { name="BADER"; version="1.36.0"; sha256="1hkvmfik4m2yw5xg4k2g551l27i64blbsdvp1kmvvyix66p53hsr"; depends=[]; }; - BAGS = derive2 { name="BAGS"; version="2.38.0"; sha256="0rnaahbdqpgl666w9xlm6prrrnks2k6p83r625j1lcj2v533232r"; depends=[Biobase breastCancerVDX]; }; - BANDITS = derive2 { name="BANDITS"; version="1.14.2"; sha256="11w0azh2g0y331imqpllnb0csjxf3gs1767cc67c1zp0ykg6yq8l"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; }; - BASiCS = derive2 { name="BASiCS"; version="2.10.5"; sha256="0ipbr7103sisw1pdb5pm4s5fa8g6a14s86zg01wgcinl11kb8vkh"; depends=[assertthat Biobase BiocGenerics BiocParallel coda cowplot ggExtra ggplot2 hexbin MASS Matrix matrixStats Rcpp RcppArmadillo reshape2 S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment viridis]; }; - BASiCStan = derive2 { name="BASiCStan"; version="1.0.0"; sha256="1an4kiipb3y1xixynpka0k2pdsi7a4s6h2mw2yfnwab1q6qf97kj"; depends=[BASiCS BH glmGamPoi Rcpp RcppEigen RcppParallel rstan rstantools scran scuttle SingleCellExperiment StanHeaders SummarizedExperiment]; }; - BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.28.0"; sha256="01n9msbnr4x6hjlvz9z43lyrbxnmhi6bc655ir4cq0vizm1mk84m"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; - BCRANK = derive2 { name="BCRANK"; version="1.60.0"; sha256="01ibjaym2kyv4x0fwv8mk5mq550lm1pqgrq40spmyrgb4vnwkh0h"; depends=[Biostrings]; }; - BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.16.2"; sha256="1g6j9ygvzcm4dx3h27b94ws1hnhn2kj60z4c77q20ry45an9b3zs"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; }; - BEARscc = derive2 { name="BEARscc"; version="1.18.0"; sha256="1j430ijy2b2j5x1y276vya25pw0qrcl2q11smr394jf4b9hm60qr"; depends=[data_table ggplot2 SingleCellExperiment]; }; - BEAT = derive2 { name="BEAT"; version="1.36.0"; sha256="0b48ravaaqbqvw35bamalrjnp77gqf13rp11wpd86m9ghpjl4gr0"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; - BEclear = derive2 { name="BEclear"; version="2.14.0"; sha256="05znaj2fialxi937mhj2dlrm3v4j2wgqafcy78qrkz7xxn13pr01"; depends=[abind BiocParallel data_table dixonTest futile_logger ids Matrix Rcpp Rdpack]; }; - BGmix = derive2 { name="BGmix"; version="1.58.0"; sha256="0r4cxrjvf3qr5514lsw1s53h4by3djb9ipkz7bi979w343dn9xfx"; depends=[KernSmooth]; }; - BHC = derive2 { name="BHC"; version="1.50.0"; sha256="0ryd9lg8pywqlxj802y9jad5nxy40ivnzdq2ldldypwyalgk9ahm"; depends=[]; }; - BLMA = derive2 { name="BLMA"; version="1.22.0"; sha256="0jxxf4g0j5prarjq18ab435h963h1d7mlb4ssj2919lf98rhxl0r"; depends=[Biobase graph GSA limma metafor PADOG ROntoTools]; }; - BOBaFIT = derive2 { name="BOBaFIT"; version="1.2.0"; sha256="0shv241jkzcyp1mydxpg6sjf74zxmc8dpsxdniw7c6arjfv4b39z"; depends=[dplyr GenomicRanges ggbio ggforce ggplot2 magrittr NbClust plyranges stringr tidyr]; }; - BPRMeth = derive2 { name="BPRMeth"; version="1.24.2"; sha256="1nmjqcqhnq8zvssglqqlp8k46q3x2zlvzjnrszcpy0caq4c86m88"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; - BRAIN = derive2 { name="BRAIN"; version="1.44.0"; sha256="1rp2aa7jigi8h3qa55a1pf5zj06a5fpyqxwpc92w8gb0flmmdbn8"; depends=[Biostrings lattice PolynomF]; }; - BRGenomics = derive2 { name="BRGenomics"; version="1.10.0"; sha256="1mdf8v2768vm1wfrcia9cs0biv51hybwa6nraddhccx25cnz1prj"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - BSgenome = derive2 { name="BSgenome"; version="1.66.3"; sha256="1ps7s6i9mv8ys8k2xw8fdkh2rl2n3kcf2q4zsz6kcz5qpav95ys6"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; }; - BUMHMM = derive2 { name="BUMHMM"; version="1.22.0"; sha256="1llxj25bjq68963nvr4b1n84400w6qb2gaa8jv7if4w8kslv5wvf"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; - BUS = derive2 { name="BUS"; version="1.54.0"; sha256="1bv50vx4dyb1cz502nqknyss5vfh9cwnms65gcyrii5xydjxr1ch"; depends=[infotheo minet]; }; - BUScorrect = derive2 { name="BUScorrect"; version="1.16.0"; sha256="05a8sn7rd4d3qx46gr742aqgf0968ni2s238z0gxbg8sifjphii7"; depends=[gplots SummarizedExperiment]; }; - BUSpaRse = derive2 { name="BUSpaRse"; version="1.12.2"; sha256="15w2363bgllw1p6h7327qx28kip0cq7s0x7da7r56yfkm0xag4rg"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; }; - BUSseq = derive2 { name="BUSseq"; version="1.4.2"; sha256="0s0kkfn45nfwv92962spf7v4kax24ldnwxipkqsfk0is57312syn"; depends=[gplots S4Vectors SingleCellExperiment SummarizedExperiment]; }; - BaalChIP = derive2 { name="BaalChIP"; version="1.24.0"; sha256="16s67v6mkv14dkk1r7c50brm7198b84h87h1wrahmrrcnzq8pi0n"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; - BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.26.0"; sha256="0bsgdjchwsfc8aiwiacr454kw97dbymq6v450m1fx7hxmmpqz1sm"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.42.0"; sha256="07pqs0jkwcbxavc65sanvhvzc9spkk46bqnwz162f3pvrz15b5h7"; depends=[RCurl RJSONIO]; }; - Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.34.0"; sha256="1zzh7d9c319lfncz73i1mcldiinqfss0b2jl0nhm836ygksykc3x"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; - BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.26.0"; sha256="1yk4zpgwy5dcgimqp9w7hscvg2irgr281f8zv8rp576c8xbzqgqz"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; - BatchQC = derive2 { name="BatchQC"; version="1.26.0"; sha256="1rjqldr9vp8ppcwbclm8cvkpsncss31n449s6nsczmv517mjna1q"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; - BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.24.0"; sha256="1r4d3h6fvn946czpf81prqwycvkgmzlcypy8dl54diagvdp3dr9y"; depends=[Biobase]; }; - BayesSpace = derive2 { name="BayesSpace"; version="1.8.2"; sha256="0a9idbj8n3n6rw38jiicpgh69jqah9p58ag9qf8qljb4fz51y4v1"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; - BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.50.0"; sha256="0309cvc9aq4nb06zysb7jvzd844pvw6jbjiqwhar6fg01cx255j0"; depends=[]; }; - BgeeCall = derive2 { name="BgeeCall"; version="1.14.0"; sha256="05w6b10vc4mmwdqnkcj7vnfigk03f03n776vqhlb38k0lx8k4hk3"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; }; - BgeeDB = derive2 { name="BgeeDB"; version="2.24.0"; sha256="14fja1dikzq60zjx1arcv1q16qd0hmibqjy0nbaivmk3zh16spkc"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; - BiFET = derive2 { name="BiFET"; version="1.18.0"; sha256="0awzq3i7ga6jsh7xgmrpzz8klx69p8cxj73p6h7ya43bgcr0iff0"; depends=[GenomicRanges poibin]; }; - BiGGR = derive2 { name="BiGGR"; version="1.34.0"; sha256="07b80qpkbas3x2yhndcm6vdkba0cpricyvnjf18dxklj5j612wfy"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; - BiRewire = derive2 { name="BiRewire"; version="3.30.0"; sha256="0nr40nm87qzbni3w0cik887csc899jh7j8z82i94v15fc30vfilh"; depends=[igraph Matrix Rtsne slam]; }; - BiSeq = derive2 { name="BiSeq"; version="1.38.0"; sha256="0k9s0l2whvlhb2zmp7119drb8nlv8nlmipvws42vb87xb9hg4a4g"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; - BicARE = derive2 { name="BicARE"; version="1.56.0"; sha256="1z7x30705a4ww9vdam2668pk064na5ispigqnaqy8zqvlfvp3c8d"; depends=[Biobase GSEABase multtest]; }; - BindingSiteFinder = derive2 { name="BindingSiteFinder"; version="1.4.0"; sha256="01gazqcvw9z112wlcljmb83vxz3bns9wgbfsccr54h8c957ynpbq"; depends=[dplyr GenomeInfoDb GenomicRanges ggforce ggplot2 Gviz matrixStats plyr rtracklayer S4Vectors tibble tidyr]; }; - BioCor = derive2 { name="BioCor"; version="1.22.0"; sha256="0a8xyrmarb2ja5zyvx5sndd67hylmwi29gpr5lwrzinww8w8b8w6"; depends=[BiocParallel GSEABase Matrix]; }; - BioMM = derive2 { name="BioMM"; version="1.14.0"; sha256="06c36lpbmcz0s8v6dsjbmlmisab3h02jx67ycwlnymfwzw1hq1cb"; depends=[BiocParallel CMplot e1071 ggplot2 glmnet imager lattice nsprcomp precrec ranger rms topGO vioplot xlsx]; }; - BioMVCClass = derive2 { name="BioMVCClass"; version="1.66.0"; sha256="1xclmwxps7yvqnaw8kn6z4mlpx6v8xfzyly4cadsjaj2qm535xxk"; depends=[Biobase graph MVCClass Rgraphviz]; }; - BioNAR = derive2 { name="BioNAR"; version="1.0.0"; sha256="1z0ln7j4ack0pv8bzxjfrq6ncsnd0jif5s42njm94c7j408fj9kz"; depends=[AnnotationDbi clusterCons dplyr fgsea ggplot2 ggrepel GO_db igraph latex2exp org_Hs_eg_db poweRlaw Rdpack RSpectra rSpectral scales stringr synaptome_db WGCNA]; }; - BioNERO = derive2 { name="BioNERO"; version="1.6.1"; sha256="0ijdnl43cgzywgsz80jd6q0irixh6367qm1ll5ww1rcr4xas2nsl"; depends=[BiocParallel ComplexHeatmap dynamicTreeCut GENIE3 ggnetwork ggnewscale ggplot2 ggrepel igraph intergraph matrixStats minet NetRep networkD3 patchwork RColorBrewer reshape2 SummarizedExperiment sva WGCNA]; }; - BioNet = derive2 { name="BioNet"; version="1.58.0"; sha256="12c6m7dzwkdh4bk1c5xmzm5ajrsba7v62mag1f3rrpmrapdh6s0j"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; - BioNetStat = derive2 { name="BioNetStat"; version="1.18.0"; sha256="1h99d6gnqw5v9ha2169zfhw9cvxhyjgkf4zm8qj1i03h2cywapgv"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; }; - BioQC = derive2 { name="BioQC"; version="1.26.0"; sha256="1ssxsxdm8vmlrmvvdz5p98apd3xsal1h3ss8556g83kgw830zsxf"; depends=[Biobase edgeR Rcpp]; }; - BioTIP = derive2 { name="BioTIP"; version="1.12.0"; sha256="1n90n4vz0cwz8irwpmrkm9qcyvk5rssl2v6wrzny4zwhzjkmvlni"; depends=[cluster GenomicRanges igraph MASS psych scran stringr]; }; - Biobase = derive2 { name="Biobase"; version="2.58.0"; sha256="0rp541nphbcya6kbk1nzrrb05g5m6pxb3yqz5cj873di9vsqlyfv"; depends=[BiocGenerics]; }; - BiocBaseUtils = derive2 { name="BiocBaseUtils"; version="1.0.0"; sha256="0p6siidrx8q6qr36fc67hzi091m2zwik3zngj27yllbfz6sn5k69"; depends=[]; }; - BiocCheck = derive2 { name="BiocCheck"; version="1.34.3"; sha256="00z2l5jnc028bmd3rl3qmgkd6k1mfa4p68kls34mkn29ic9ls22m"; depends=[BiocManager biocViews codetools graph httr knitr stringdist]; }; - BiocDockerManager = derive2 { name="BiocDockerManager"; version="1.10.0"; sha256="13l5shmiiv4wl9m5xnwzagjxqrchjg9znvcgf7hv8f263l2yc8qm"; depends=[dplyr httr memoise readr whisker]; }; - BiocFHIR = derive2 { name="BiocFHIR"; version="1.0.0"; sha256="1b0mychyv778cf2jmib15jpjmh83s4sjr69qrjgmv0c7kvv4msf7"; depends=[BiocBaseUtils DT graph igraph jsonlite shiny tidyr visNetwork]; }; - BiocFileCache = derive2 { name="BiocFileCache"; version="2.6.1"; sha256="16316a5pgyl5rppyviibf6z3k3m7xmvqyylf1kxdpg0avs6dk8w7"; depends=[curl DBI dbplyr dplyr filelock httr rappdirs RSQLite]; }; - BiocGenerics = derive2 { name="BiocGenerics"; version="0.44.0"; sha256="17dhr7vaph8dnvyklszyas7y8i64mxqxhnfhb6q3l47gq5if8645"; depends=[]; }; - BiocIO = derive2 { name="BiocIO"; version="1.8.0"; sha256="15d4xsn3k32q7lzcyxvs70f0jbh9fgwl3vi7xd6sqpggar12hh9f"; depends=[BiocGenerics S4Vectors]; }; - BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.16.0"; sha256="09f00rf5gwwlxxaycsciq4l53gjg5kjayx8xzhns2yf1fv297j9p"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; - BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.18.0"; sha256="1x4mzzjvjgcxg5xyxjib8r2n55hpf2vzcci0xkb7d8frakfncn9s"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; - BiocParallel = derive2 { name="BiocParallel"; version="1.32.6"; sha256="1aq3b5fjs8j0d6nf3992a6gnzvmmaxbbkrj1im0k6ppsqac6dlj0"; depends=[BH codetools cpp11 futile_logger snow]; }; - BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.16.1"; sha256="0cl88adkbxv7sz07b8h5qpwwkwg85jx6xjinkd0yjac4xm7s4lyf"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rorcid rvest stringr tibble xml2]; }; - BiocSet = derive2 { name="BiocSet"; version="1.12.1"; sha256="1cqp5m6yic5vsp8k05r50sx2cmi9cwzxfmlswcjw28nascq3gpv0"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; - BiocSingular = derive2 { name="BiocSingular"; version="1.14.0"; sha256="041izymcifvi0pa97fh5000bwlyl0mdk9003i5bbvlld6mbbv2kk"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; - BiocSklearn = derive2 { name="BiocSklearn"; version="1.20.1"; sha256="17hgqy6n38ga221p5sxhbsahhbs81bmyx1vfg127cx3dpv5lq5vd"; depends=[basilisk reticulate SummarizedExperiment]; }; - BiocStyle = derive2 { name="BiocStyle"; version="2.26.0"; sha256="092hpmyhra755j32vc8w2l6xqwg09jm8apnk5rvxi1cm5034yvsl"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; - BiocVersion = derive2 { name="BiocVersion"; version="3.16.0"; sha256="1djp23y131dyx4g22f9r7an177bq0mky94bvpqvc8b14166g0ynw"; depends=[]; }; - BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.24.0"; sha256="00cy5lqmfap57bm2s00bis9ddci2lv1lrp0mk5ydgx061p4ym29i"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; }; - Biostrings = derive2 { name="Biostrings"; version="2.66.0"; sha256="1z86s8ncl91pxcjnv8fwvgwjjnd384dn5paylwyymrigph4ca4kk"; depends=[BiocGenerics crayon GenomeInfoDb IRanges S4Vectors XVector]; }; - BitSeq = derive2 { name="BitSeq"; version="1.41.0"; sha256="185cssrvaw2x0r3y5fqnfqm31924ccwg33qpj3v8ywrh3x7qn22p"; depends=[IRanges Rhtslib Rsamtools S4Vectors]; }; - BloodGen3Module = derive2 { name="BloodGen3Module"; version="1.6.0"; sha256="01hxz2y906lx848pw64j78bwzm5yx9cjw0yshicnv0n2kbw1w53g"; depends=[circlize ComplexHeatmap ExperimentHub ggplot2 gtools limma matrixStats preprocessCore randomcoloR reshape2 SummarizedExperiment testthat V8]; }; - BrainSABER = derive2 { name="BrainSABER"; version="1.8.0"; sha256="1nxcjvaip7pp387bhdc2pmjai3chib1n63ig0cslhppzzjp2y6jd"; depends=[BiocFileCache biomaRt data_table lsa S4Vectors shiny SummarizedExperiment]; }; - BridgeDbR = derive2 { name="BridgeDbR"; version="2.8.0"; sha256="03zpgd836c4qdbp8fmz0yb20pdyszs2pra9ih3b68pv4b6rx25jz"; depends=[curl rJava]; }; - BrowserViz = derive2 { name="BrowserViz"; version="2.20.0"; sha256="010hmaba81swqsv0nqzs3ybg31n0b9zyjgxgp270az4bkrw59gjs"; depends=[BiocGenerics httpuv jsonlite]; }; - BubbleTree = derive2 { name="BubbleTree"; version="2.28.0"; sha256="0rw7127hgpzw7akga8daw6gzlqfamx347l53v6sx05xdgn451097"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; - BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.62.0"; sha256="08b8pm1vkwvkbv3dqldb9h1n7aiwih7dw66w8ag1xjp0sn9v9d7d"; depends=[]; }; - BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.62.0"; sha256="1b0c0dick3gxdlrfjgx4dpgaqry5rd9gmpvdinfs94f9bfp89xyf"; depends=[BufferedMatrix]; }; - BumpyMatrix = derive2 { name="BumpyMatrix"; version="1.6.0"; sha256="1w7vfmpjhm2jdykzfqkfwz0hg52c3h1d3kq3j0mh340l0pc0bdzx"; depends=[IRanges Matrix S4Vectors]; }; - CAEN = derive2 { name="CAEN"; version="1.6.0"; sha256="04zdsvkdb532l9bnm14p5ycq4wjqgvvjsr9cq6gwsa87ly1wf72l"; depends=[PoiClaClu SummarizedExperiment]; }; - CAFE = derive2 { name="CAFE"; version="1.34.0"; sha256="03riynxr0gqf5qapplr78sffbdv52x3vp6x5yjzai09xhky9qa7s"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; - CAGEfightR = derive2 { name="CAGEfightR"; version="1.18.0"; sha256="1iw8bf7dcgg3vd5l29pcrvbrx3ksc3dlp5nbhcfcqp5mgr65j4ny"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; - CAGEr = derive2 { name="CAGEr"; version="2.4.0"; sha256="1lcajai32pnnjv4yp6flblv37a0f54mz4sxv6jljpgw6iyfy49p0"; depends=[BiocGenerics BiocParallel BSgenome data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; - CAMERA = derive2 { name="CAMERA"; version="1.54.0"; sha256="17ygir00xjjxwlgmlxm0sw5sf645fxabjdziw4ja1ia641cpd6mm"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; - CARNIVAL = derive2 { name="CARNIVAL"; version="2.8.0"; sha256="0qdydrrdim99aggm001380r8g6vny4wxb6kx2dbhk7b283whx0q3"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr tibble tidyr]; }; - CATALYST = derive2 { name="CATALYST"; version="1.22.0"; sha256="0n3x5w074x5hhgdf2qa0pkma4vrjwrcgjna7hx0az6ixkgpbkrpv"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; - CBEA = derive2 { name="CBEA"; version="1.2.0"; sha256="0nycc7xql3f589pwdzw19pmvbhz3zxa88dkdq0746di9agn6wfdd"; depends=[BiocParallel BiocSet dplyr fitdistrplus generics glue goftest lmom magrittr mixtools Rcpp rlang SummarizedExperiment tibble tidyr TreeSummarizedExperiment]; }; - CCPROMISE = derive2 { name="CCPROMISE"; version="1.24.0"; sha256="1iwvmw7k64n41qggxjxk3jbhrhpdnwfgn6vbm3cy467kpfzbzrzg"; depends=[Biobase CCP GSEABase PROMISE]; }; - CEMiTool = derive2 { name="CEMiTool"; version="1.22.0"; sha256="15dm4ajhnf7wv1cs6kfpp4sxfqyl0x11d1bzjagwxk7c911p4a8x"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; - CFAssay = derive2 { name="CFAssay"; version="1.32.0"; sha256="0lm7281d7gvdlkk35195zi2kjs0xj7jnr3gwkjgrvn6qhi0dk2vr"; depends=[]; }; - CGEN = derive2 { name="CGEN"; version="3.34.3"; sha256="0viymdgfnc16mihi31fd5wpbbr57b3kaz55p9sg2rzrw3br6cqyq"; depends=[mvtnorm survival]; }; - CGHbase = derive2 { name="CGHbase"; version="1.58.0"; sha256="01n1z525h4h6yr3jfalgjg2g6lhd77sc3n33q0485x7l6xqv1dvp"; depends=[Biobase marray]; }; - CGHcall = derive2 { name="CGHcall"; version="2.60.0"; sha256="0860w2vf662qqii09pjdx85yl346jcldxiikhbwv0vg86blwb2g2"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; - CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.52.0"; sha256="08s3mdsaqv92f6mjj4mg1m7b13zpfm7c144mv754pnpfay2slw88"; depends=[Biobase CGHbase CGHcall]; }; - CGHregions = derive2 { name="CGHregions"; version="1.56.0"; sha256="1r6zi99jfq14jgw4v7nvad2fans0nd08xyg03qmc1j37hsnac769"; depends=[Biobase CGHbase]; }; - CHETAH = derive2 { name="CHETAH"; version="1.14.0"; sha256="0cizc0i5gqbn12kd4l5ym35w3k2ydqf0nmdhn7p3486ivp81f5rq"; depends=[bioDist corrplot cowplot dendextend ggplot2 pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; }; - CHRONOS = derive2 { name="CHRONOS"; version="1.26.0"; sha256="0akw9l0l23kc18d9m5sgfcsnc22py07k77l0wqikpsyjzvvj94aw"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; - CIMICE = derive2 { name="CIMICE"; version="1.6.0"; sha256="0w3rx643ing2i1b71fhcmqm9pbrw7q206lk7ncml3gaaw13lf6hc"; depends=[assertthat dplyr expm ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr tidygraph tidyr visNetwork]; }; - CINdex = derive2 { name="CINdex"; version="1.26.0"; sha256="186akmq5s81849pa56f3cqdacrmip2h9i0n67qkv9jnxk1l3h2x3"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; - CMA = derive2 { name="CMA"; version="1.56.0"; sha256="13qdhg5w1yga5sb4vack2srx5ly126g740wbxb55cg1kyqnzs1pd"; depends=[Biobase]; }; - CNAnorm = derive2 { name="CNAnorm"; version="1.44.3"; sha256="1xzlxqmipyky86gh169njil8jvha0rnz9cgby1grzwlm5kjqqxsa"; depends=[DNAcopy]; }; - CNEr = derive2 { name="CNEr"; version="1.34.0"; sha256="15y27ca14fdhn2prqgkyikff7p7490xn0bp2c7cnwhw173mm1syw"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; - CNORdt = derive2 { name="CNORdt"; version="1.40.0"; sha256="0ybxps1dnl7v7p68vkxqjr7f7zbmaqnh9x2gq1vzhcgzv767p1jz"; depends=[abind CellNOptR]; }; - CNORfeeder = derive2 { name="CNORfeeder"; version="1.38.0"; sha256="0y8wmm4sb28k4hk9cc59wqk1im79z13ahm232dcqh78772cw5w0h"; depends=[CellNOptR graph]; }; - CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.40.0"; sha256="1d5ckcmj9dzxi5qxny0yqb6ygh0aqxfm31ccnr38awr9y2ysp9n1"; depends=[CellNOptR nloptr]; }; - CNORode = derive2 { name="CNORode"; version="1.40.0"; sha256="1f1699gwfvwsqmv7154h44jli5i49y8skha7p8mvawxm1cr86mg0"; depends=[CellNOptR genalg knitr]; }; - CNTools = derive2 { name="CNTools"; version="1.54.0"; sha256="18rl79i66z8d3addinp76krnyp9hzvprrihrksvcjkvrrl14adaz"; depends=[genefilter]; }; - CNVMetrics = derive2 { name="CNVMetrics"; version="1.2.0"; sha256="11i47ml2y5s8adh3qysasjl8b3w4xhg5h7v9rcdmd1hysjl4d4hi"; depends=[BiocParallel GenomicRanges gridExtra IRanges magrittr pheatmap S4Vectors]; }; - CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.30.0"; sha256="02k6bbzaj7q87nsg9zqda8dz44q3wshsps5pzm2764gxcwn4sz0z"; depends=[BiocGenerics exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; - CNVRanger = derive2 { name="CNVRanger"; version="1.14.0"; sha256="1if6k9iakrvq0fw6j2xpd26l13ikkpni8px3w76c9z0wsvbjf0cc"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; - CNVfilteR = derive2 { name="CNVfilteR"; version="1.12.2"; sha256="07jjrzkf8bk20wb8wiw155bq0dhgnz24bhwzsdh2dakirmjhfpzb"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; - CNVgears = derive2 { name="CNVgears"; version="1.6.0"; sha256="0gqw8l7pswamjm4j1jr8ri1rpf31szlx9ba6b99j3iypisxq1r1r"; depends=[data_table ggplot2]; }; - CNViz = derive2 { name="CNViz"; version="1.6.0"; sha256="1nm8k4ry8p6k8cb6bqi6dyffi48fyhv1gq1277cz1nys31y0pdnv"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; }; - CNVrd2 = derive2 { name="CNVrd2"; version="1.36.0"; sha256="0jr9m08ip17l9w9i62nqdv13p5f3s7n0zyj4y3vy671s6c1syfiv"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; - COCOA = derive2 { name="COCOA"; version="2.12.0"; sha256="01879lxdzxbg77sd5r8rw59kaa9s5jrsfnd2na68hsv41vhs64xf"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; }; - CODEX = derive2 { name="CODEX"; version="1.30.0"; sha256="1wrxzdk0ldkb2svgi84gvmkg97m3fv71937harzhmwhfwbk2mlc6"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; - COHCAP = derive2 { name="COHCAP"; version="1.44.0"; sha256="0nmnvnz8qli5xxzdnps0ndyjniixd4qpm8kbigmyqi0zviha588i"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; - COMPASS = derive2 { name="COMPASS"; version="1.36.2"; sha256="0bszxfwayqnkpp715r1c2pwwkavwh8dfqlr41k6aqjbn230aniv6"; depends=[abind BiocStyle clue coda data_table dplyr foreach knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; - CONFESS = derive2 { name="CONFESS"; version="1.26.0"; sha256="10yz0nwssgak0gndw9py5yksdq1syb7dfa33kvkhf5ljwyxf955c"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; - CONSTANd = derive2 { name="CONSTANd"; version="1.6.0"; sha256="1mkzmjqsm9kqlabw50d8jn0jqx2iad1wn10il4j473bhamanwqg4"; depends=[]; }; - CORREP = derive2 { name="CORREP"; version="1.64.0"; sha256="07pr5v8sqzlvag1yapaz01pl54c8ab1gdq2hinhwv2kiyyxpkq11"; depends=[e1071]; }; - COSNet = derive2 { name="COSNet"; version="1.32.0"; sha256="1w1rh8c7nwxwi9szkij1k675dp0rg0li2ppzskkwpxm6vddyspm8"; depends=[]; }; - COTAN = derive2 { name="COTAN"; version="1.2.0"; sha256="1i19p2a3c1z7j4fc88k2ynvk7siwbl320jhlnm2b3giim7rs9xp9"; depends=[circlize ComplexHeatmap dplyr ggplot2 ggrepel irlba Matrix Rfast rlang scales tibble tidyr]; }; - CRISPRseek = derive2 { name="CRISPRseek"; version="1.38.0"; sha256="1658awsdc1qqm3qss3h8cbnapahn9rd476rhfsrckcq7gdqqg69h"; depends=[BiocGenerics Biostrings BSgenome data_table DelayedArray dplyr GenomeInfoDb GenomicRanges hash IRanges keras mltools reticulate rhdf5 S4Vectors seqinr XVector]; }; - CRImage = derive2 { name="CRImage"; version="1.46.0"; sha256="0m097an8v06nx3alyj1gxz6i6g33ryrk1wc6pxia9kdb11rwzwkq"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; - CSAR = derive2 { name="CSAR"; version="1.50.0"; sha256="09js7lh1ga8l3kfkqc2vzrg83r3jckhcr5fdx1078sp2rc1dpv2y"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - CSSP = derive2 { name="CSSP"; version="1.36.0"; sha256="1hnpg6ba73h5r83g8ziiwcai8blan5piir8n1r7rnf6ixr20f352"; depends=[]; }; - CSSQ = derive2 { name="CSSQ"; version="1.10.0"; sha256="11msiwpk2swb5ijs59adp794fa50c42v6sb2i4hgpiayqfbmiiig"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - CTDquerier = derive2 { name="CTDquerier"; version="2.6.0"; sha256="15p4fb3p1i3i2fy0n3qz8p9psikhdfk59wdypn0rivmp0g35rvdi"; depends=[BiocFileCache ggplot2 gridExtra igraph RCurl S4Vectors stringdist stringr]; }; - CTSV = derive2 { name="CTSV"; version="1.0.0"; sha256="11simigbrqlmr4b3ywi83zb6jc4f21ava9vyyk5y4qfndn16lijh"; depends=[BiocParallel knitr pscl qvalue SpatialExperiment SummarizedExperiment]; }; - CancerInSilico = derive2 { name="CancerInSilico"; version="2.18.0"; sha256="0szbz88wnr3dbf7k9bhihv6hkr29gsp9vrllr201wx5qfzl2gncy"; depends=[BH Rcpp]; }; - CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.24.0"; sha256="1dp7h2bgpiy9ywv4l9gii1pkm1z7zsilpadb3l2piyd3r747dwy1"; depends=[cluster ConsensusClusterPlus impute limma NMF sigclust survival]; }; - Cardinal = derive2 { name="Cardinal"; version="3.0.1"; sha256="0n8760dfwc5qna6v4b7sxwr20rk10pj2alp259ypgmpb2ryk01sl"; depends=[Biobase BiocGenerics BiocParallel EBImage irlba magrittr Matrix matter mclust nlme ProtGenerics S4Vectors signal sp viridisLite]; }; - Category = derive2 { name="Category"; version="2.64.0"; sha256="1j62b3ycvb27p80k1a1qj4pdf8cjynf5fkj65v74c3l1hgl9qxnh"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; - CausalR = derive2 { name="CausalR"; version="1.30.0"; sha256="0nxiwnln696v3hw1m19whpajzqfb6y0c9dn3v154l7n84v0j5wd2"; depends=[igraph]; }; - CeTF = derive2 { name="CeTF"; version="1.10.2"; sha256="12sylkz8spvpbbb3rbibbsnv7g2b795h1n9bfxjf51yykdcknrb3"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 dplyr GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment]; }; - CellBarcode = derive2 { name="CellBarcode"; version="1.4.0"; sha256="0kiariwn252ri27gsdy7924i98akx8bmpgr76f7s395hrhlrc36d"; depends=[BH Biostrings Ckmeans_1d_dp data_table egg ggplot2 magrittr plyr Rcpp S4Vectors seqinr ShortRead stringr zlibbioc]; }; - CellBench = derive2 { name="CellBench"; version="1.14.0"; sha256="0p5bs7v5ya31z0hxaw52ccx8qv8yq86q6k0qcd2z20fia0f9471v"; depends=[BiocFileCache BiocGenerics BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; }; - CellMapper = derive2 { name="CellMapper"; version="1.24.0"; sha256="172bmzk5g18slvym5w557c9wy7irb0mp81kanwn1csk0va3cl9pc"; depends=[S4Vectors]; }; - CellMixS = derive2 { name="CellMixS"; version="1.14.0"; sha256="1nl39wrrfp7kfxmm0m2n1x9rgwyykxpkmbpgvipgs5rp818ghalg"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; }; - CellNOptR = derive2 { name="CellNOptR"; version="1.44.0"; sha256="1ym74v3kq6656vvd02y1m2czil9mgdr1bay3q6zlgcygmllq8n14"; depends=[ggplot2 graph igraph RBGL RCurl Rgraphviz rmarkdown stringi stringr XML]; }; - CellScore = derive2 { name="CellScore"; version="1.18.0"; sha256="1790p98zhjl3lpm4xcn3rjwizmzgpylzk7c0ndn5hlrz5ck3qmbm"; depends=[Biobase gplots lsa RColorBrewer squash]; }; - CellTrails = derive2 { name="CellTrails"; version="1.16.0"; sha256="02jwp5ypp32hs8sxgi8ifv62sadlpgd8g8i6i03yahwz7pd8d3ry"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; - CellaRepertorium = derive2 { name="CellaRepertorium"; version="1.8.0"; sha256="144d1h73x4gbymjka5a4i5nvqj7fmmhw9kdq1a9qmf0bah2xwcv0"; depends=[BiocGenerics Biostrings dplyr forcats generics glue Matrix progress purrr Rcpp reshape2 rlang S4Vectors stringr tibble tidyr]; }; - CelliD = derive2 { name="CelliD"; version="1.6.2"; sha256="0dh9nn8kx6fsiqjakm2abx9cz19ppqz8c0wly5lhj54gfnmri7gc"; depends=[BiocParallel data_table fastmatch fgsea ggplot2 glue irlba Matrix matrixStats pbapply Rcpp RcppArmadillo reticulate Rtsne scater Seurat SingleCellExperiment stringr SummarizedExperiment tictoc umap]; }; - Cepo = derive2 { name="Cepo"; version="1.4.0"; sha256="07ymk3kw0r8sdk3fyssh93ap3fx2xq5mhznksdvi2i1k4rv2pc07"; depends=[BiocParallel DelayedArray DelayedMatrixStats dplyr ggplot2 GSEABase HDF5Array patchwork reshape2 rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; - CexoR = derive2 { name="CexoR"; version="1.36.0"; sha256="0bd3kd3d67h3wbp7wbccwqppm3pfmvb45k4k13w772mawzr2k6ja"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; - ChAMP = derive2 { name="ChAMP"; version="2.28.0"; sha256="10ss0a3miqrx92vy1r1h5rv3mnjn4iyl32q86s0x59d3fvqp2cx1"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; - ChIC = derive2 { name="ChIC"; version="1.18.0"; sha256="1z00d2952qwscx5ljr7zvxm6kydmk188iiky0zprxl9hzp69iv17"; depends=[BiocGenerics caret caTools ChIC_data genomeIntervals GenomicRanges IRanges progress randomForest Rsamtools S4Vectors]; }; - ChIPComp = derive2 { name="ChIPComp"; version="1.28.0"; sha256="1wnc7zrnnxk3nlk2l9y4il75dzirndp4vs5ivxn5rzqr6p7h4bhw"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; - ChIPQC = derive2 { name="ChIPQC"; version="1.34.1"; sha256="18kggxvmjjgnkgyx6p7l5n3f7v5smqyamg91b1jp204i8idmw3a9"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; - ChIPXpress = derive2 { name="ChIPXpress"; version="1.42.0"; sha256="06yg5fvq0z63iz9jfpjl4bd5bzppz8ai9j3am1m5h1632xdlp3bh"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; - ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.20.0"; sha256="04gdhzvhqnq2w0dcx2153bkg2ywrmz2zjg323sajl1gm32dn036g"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RColorBrewer RcppRoll ROCR rtracklayer S4Vectors]; }; - ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.22.0"; sha256="0k4vbdwpp7z06fzjgqnmrx2yllayc0z2baj26bh4vji5vb48k9ik"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; - ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.32.0"; sha256="13syh3mvqpaqgfndcrwdmn7815f4myxhzjga9a9q3lspci25rvy6"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; }; - ChIPseeker = derive2 { name="ChIPseeker"; version="1.34.1"; sha256="0jr9mc79di0r3xrc7m27vwk85qa4fpcwp4nb77pr9s6jbv23773r"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - ChIPseqR = derive2 { name="ChIPseqR"; version="1.52.0"; sha256="0h4bb676s8xz57pcwp421563fxapqpkxisikrjk6z5vb8c5az7vi"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; - ChIPsim = derive2 { name="ChIPsim"; version="1.52.0"; sha256="1g0i15lijpl0wrzcr9difblh6zi4ba1p2c5kvdgqjjnw5gc7c09i"; depends=[Biostrings IRanges ShortRead XVector]; }; - ChemmineOB = derive2 { name="ChemmineOB"; version="1.36.0"; sha256="0jm2igxkxzyfl6phxa1305cddfgslbrydbr26ngwy5403vhnfg1w"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; - ChemmineR = derive2 { name="ChemmineR"; version="3.50.0"; sha256="0rk4ydanqxjh5yj0m9qlj06a12j7rkx9gxv6x7zpiyvnscahw63i"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra jsonlite png Rcpp RCurl rjson rsvg stringi]; }; - Chicago = derive2 { name="Chicago"; version="1.26.0"; sha256="1b24iiy6d5kzpixgpdkg4s1cb50jdrmgn9sjgvwr1qinckwz6zdn"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; - ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.52.0"; sha256="1kfm73kma072g2hd4r65d7nq0ydnar7c63j658vjxi2r05yr6iaw"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; - ChromSCape = derive2 { name="ChromSCape"; version="1.8.0"; sha256="0zvvc826zqi88gr2m4lzgmc2mgh83f9vc6f033l77a367v7p5cnk"; depends=[batchelor BiocParallel colorRamps colourpicker ConsensusClusterPlus coop DelayedArray dplyr DT edgeR forcats fs GenomicRanges gggenes ggplot2 ggrepel gridExtra IRanges irlba jsonlite kableExtra Matrix matrixTests msigdbr plotly qs qualV Rcpp rlist Rsamtools rtracklayer Rtsne S4Vectors scater scran shiny shinycssloaders shinydashboard shinydashboardPlus shinyFiles shinyhelper shinyjs shinyWidgets SingleCellExperiment stringdist stringr SummarizedExperiment tibble tidyr umap viridis]; }; - CircSeqAlignTk = derive2 { name="CircSeqAlignTk"; version="1.0.0"; sha256="0jc63nmlkvx829h85fk8wh9sma200hv0g3a94slxhdiidnjph7l6"; depends=[BiocGenerics Biostrings dplyr ggplot2 IRanges magrittr Rbowtie2 Rhisat2 rlang Rsamtools S4Vectors ShortRead tidyr]; }; - CiteFuse = derive2 { name="CiteFuse"; version="1.10.0"; sha256="04zf5bvwqgr8rk4mzdglrbys62qsqgm4d5yzn2gpyk74qb8jcbir"; depends=[cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap randomForest reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SummarizedExperiment uwot]; }; - ClassifyR = derive2 { name="ClassifyR"; version="3.2.7"; sha256="1wwibaynddm61g30vnwjw99bpp219v70ngj1ipgjjqd96wgj9pl4"; depends=[BiocParallel dplyr genefilter generics MultiAssayExperiment ranger rlang S4Vectors survival tidyr]; }; - Clomial = derive2 { name="Clomial"; version="1.34.0"; sha256="03xbkszrp760d7qzfflzrcj9hq42r1w2692nzsdzs7c5d4pcavss"; depends=[matrixStats permute]; }; - Clonality = derive2 { name="Clonality"; version="1.46.0"; sha256="13fnw8l11gzvsn95kcskd0q064nay04x9q12h7wb2n9wbmi7s4av"; depends=[DNAcopy]; }; - CluMSID = derive2 { name="CluMSID"; version="1.14.0"; sha256="0lgajn2zyanz8fjq9rmhc6pmg3f32zsb6n9b4n60kx2wva3jmna9"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; }; - ClusterJudge = derive2 { name="ClusterJudge"; version="1.20.0"; sha256="0qbd2hq6phs6vkvz63xdr3xmil9fngaphh3a5s452p0sk8ijzrj2"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; - ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.26.0"; sha256="1sa5nddssny2nhylm0560nm4bddn8irckanr0fj0s0klsmssrsl2"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; - CoCiteStats = derive2 { name="CoCiteStats"; version="1.70.0"; sha256="11p7gz6bzc8znjqhpa0wj8fyh2f1xi0f53vfihivl7ladyml19lz"; depends=[AnnotationDbi org_Hs_eg_db]; }; - CoGAPS = derive2 { name="CoGAPS"; version="3.18.0"; sha256="0cc9anznijn3klfkp6hiqzwxwq3la9k5k6c88h37x9zh9r7sdp4a"; depends=[BH BiocParallel cluster gplots RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - CoRegNet = derive2 { name="CoRegNet"; version="1.36.0"; sha256="0z9b7azardbfqkwdn5bd2wnja6xzxm9qfhpcaar9xp45mz0a34h7"; depends=[arules igraph shiny]; }; - Cogito = derive2 { name="Cogito"; version="1.4.0"; sha256="14xaf6kfxj46fp4v1d35am700r5isn1h026ai3y85l5ilrhb4kky"; depends=[AnnotationDbi BiocManager entropy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 jsonlite magrittr rmarkdown S4Vectors TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - ComPrAn = derive2 { name="ComPrAn"; version="1.6.0"; sha256="1zn93iwmayrqwsk94bcswm295ihn0v3yksliq7w92y6abb4vx4yh"; depends=[data_table dplyr DT forcats ggplot2 magrittr purrr RColorBrewer rio rlang scales shiny shinydashboard shinyjs stringr tibble tidyr VennDiagram]; }; - ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.14.0"; sha256="1mf0h2j31m57jd3s1sj8ijn9wdgbg452d79drdkxypxqvpm7b927"; depends=[circlize clue codetools colorspace digest doParallel foreach GetoptLong GlobalOptions IRanges matrixStats png RColorBrewer]; }; - CompoundDb = derive2 { name="CompoundDb"; version="1.2.1"; sha256="0f7jj0bphgjjba7dgrmgar6l3zv8ln3dsaq2adcy22hkryfidm55"; depends=[AnnotationFilter Biobase BiocGenerics ChemmineR DBI dbplyr dplyr IRanges jsonlite MetaboCoreUtils MsCoreUtils ProtGenerics RSQLite S4Vectors Spectra tibble xml2]; }; - ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.62.0"; sha256="15cz3bbl21vzf5xn5xb791sy2yvzir7h4fdqm0a5anhbh8jg0iaq"; depends=[ALL Biobase cluster]; }; - CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.14.0"; sha256="1pbi17z8fmyr0n8yvvpa5lw36pqb4mv6apcakdq39s7wzzczgpms"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; }; - CopywriteR = derive2 { name="CopywriteR"; version="2.29.0"; sha256="1h4cyrjwdazgk49yzi9lvya8bfz9r4cpq19hyzikvc81ia8zdxs6"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; - CoreGx = derive2 { name="CoreGx"; version="2.2.0"; sha256="0j10crmgsi0sm3cx27qbnl8d9yfn9w4wpkqaqdizpj3g5bby3knd"; depends=[bench Biobase BiocGenerics BiocParallel BumpyMatrix checkmate crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; }; - Cormotif = derive2 { name="Cormotif"; version="1.44.0"; sha256="1wbqycmmi307z61fwi2smaavh9rwjd65ifbrwkb2wlhffnnp0852"; depends=[affy limma]; }; - CoverageView = derive2 { name="CoverageView"; version="1.36.0"; sha256="0cqvwp0ybxgnk9kif3ly780v23pwv4cyh46kk47gxcxqqkjv36ld"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - CrispRVariants = derive2 { name="CrispRVariants"; version="1.26.0"; sha256="184bn5gyjj0s7wpnyrqxrsh47f7f9w020p5fbhbi48nnks38j7ca"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; - CyTOFpower = derive2 { name="CyTOFpower"; version="1.4.0"; sha256="0g3629xi5hvkds2ixibr9p2ipjyr341nksafh38ap2w870whc31j"; depends=[CytoGLMM diffcyt dplyr DT ggplot2 magrittr rlang shiny shinyFeedback shinyjs shinyMatrix SummarizedExperiment tibble tidyr]; }; - CytoDx = derive2 { name="CytoDx"; version="1.18.0"; sha256="1w5xy40wpyw6fj42zj2zf79r0kkdhn6h7wxzilh1dhnqkd0k8ay1"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; - CytoGLMM = derive2 { name="CytoGLMM"; version="1.6.0"; sha256="1vvzw440blicfmdidr1sh8wiyfwmgrhmvazikm4f7g8jcw0cn9dm"; depends=[BiocParallel caret cowplot doParallel dplyr factoextra flexmix ggplot2 ggrepel logging magrittr MASS Matrix mbest pheatmap RColorBrewer rlang stringr strucchange tibble tidyr]; }; - CytoML = derive2 { name="CytoML"; version="2.10.0"; sha256="105vdmwwglknwk7x7cb6b2jf6bngbxsly0ymjf8175p2lfv98jsa"; depends=[BH Biobase cpp11 cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite openCyto RBGL Rgraphviz Rhdf5lib RProtoBufLib tibble XML yaml]; }; - DAMEfinder = derive2 { name="DAMEfinder"; version="1.10.1"; sha256="1cgykb70mxnhilwwp1jr4dr523zvjxpix173s4ldfh49064gzwc1"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; - DAPAR = derive2 { name="DAPAR"; version="1.30.6"; sha256="1z0p3aiypi5lpa4nam45klcf9dq8k18aig917w0v73ix3l88bmad"; depends=[Biobase DAPARdata foreach highcharter MSnbase]; }; - DART = derive2 { name="DART"; version="1.46.0"; sha256="08nmnnvz4iy70jsd0cnp41mzh2l9mccxnf62lbrhm95kxpsyaxvj"; depends=[igraph]; }; - DECIPHER = derive2 { name="DECIPHER"; version="2.26.0"; sha256="01hzxd5f5v2kspx5jd7l21bn87cfgm9aah3zd4d6kyxv98h5a3n1"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; - DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.18.0"; sha256="12gw9b0gdwyih51j2gzay6vxhycgc52n8svd0slv6wsbw5rc19lh"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; - DEFormats = derive2 { name="DEFormats"; version="1.26.0"; sha256="1mcjwck06akl8zm6bkrcjqvqrfdzrcd59qvnxw5iri46i8vd7jac"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; - DEGraph = derive2 { name="DEGraph"; version="1.50.0"; sha256="1g0hbkwr0fwgy9zryn3bmp1lfqpplqh3489bb1z7w12sydphi5ik"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; - DEGreport = derive2 { name="DEGreport"; version="1.34.0"; sha256="0i75hdainn9sppvix2j2m0faprq1ajdkjm8bl2h1hxq8s7djmq6c"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr logging magrittr psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; - DEGseq = derive2 { name="DEGseq"; version="1.52.0"; sha256="15x3hb767j1s9snx3zk2vbyz3nvb33gsilpkidcncswj140h9cr6"; depends=[qvalue]; }; - DEP = derive2 { name="DEP"; version="1.20.0"; sha256="13c1g4dqbrvw1cjfgxjgc5rwp5zvfrh5sghjlpzssc0l5m5y5c7s"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; - DEScan2 = derive2 { name="DEScan2"; version="1.18.2"; sha256="1d3vpq22lbqkcskz673bws3y9cmrfhk6j3p45hkf6yiwj0w54z0s"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; - DESeq2 = derive2 { name="DESeq2"; version="1.38.3"; sha256="0kryg9jb6zl4zj1wx09rmljqlhr5vdbcmdnri4q91jpggsaj9nxm"; depends=[Biobase BiocGenerics BiocParallel geneplotter GenomicRanges ggplot2 IRanges locfit matrixStats Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; - DEWSeq = derive2 { name="DEWSeq"; version="1.12.0"; sha256="0y3v46ib9g581mkmhjr8avqj1lw2kgn9wdgylpggfvbv9wfyjkwc"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; - DEXSeq = derive2 { name="DEXSeq"; version="1.44.0"; sha256="01728hag1c5fh4n0v57k1p9ss5rqgckab4cnj5flp750myi1fbps"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; - DEqMS = derive2 { name="DEqMS"; version="1.16.0"; sha256="0v0jaynssmf8pyyjkdr3yg5p7y6zpjikwl5hdv2k7i52lnimr2r0"; depends=[ggplot2 limma matrixStats]; }; - DEsingle = derive2 { name="DEsingle"; version="1.18.1"; sha256="1lr33vawcyayzwclnrpqzqk2qdflzxrvddm8nr7jjh2zi907cvhy"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; - DEsubs = derive2 { name="DEsubs"; version="1.24.0"; sha256="0z2ghrmnr4cmzw5vrqjf351p09vprir9kwwish65byifw4s65rv9"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; - DExMA = derive2 { name="DExMA"; version="1.6.0"; sha256="04j5h3ijmhzkgs02r0vsq3p00i4ydcnnis4kn1a69bp3x1bnv0n9"; depends=[Biobase bnstruct DExMAdata GEOquery impute limma pheatmap plyr RColorBrewer scales snpStats sva swamp]; }; - DFP = derive2 { name="DFP"; version="1.56.0"; sha256="1pkg4461ib1iplcrlwkwrqzdzqixj2rhwwfkhjw87z4rx04hz3gf"; depends=[Biobase]; }; - DIAlignR = derive2 { name="DIAlignR"; version="2.6.0"; sha256="04kpdab8h0krxqzsxl3sb1gsxqwrrdpsn7irgdpns8qqjlzcbzv5"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; }; - DMCFB = derive2 { name="DMCFB"; version="1.12.0"; sha256="00j362frx70vj326xjppkzfd36mvfq3ym58dnckz3c0jb2dxv3wr"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors SummarizedExperiment tibble]; }; - DMCHMM = derive2 { name="DMCHMM"; version="1.20.0"; sha256="1cf5i3ikn81qw0s3kbx2yl15fmgwal22yqpys8wya8pd2agbi4lj"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; - DMRScan = derive2 { name="DMRScan"; version="1.20.0"; sha256="1mx0kk1rbn0mkk94mm1a7mk64ia315fvwwb34adyslmyq5gq93i5"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; - DMRcaller = derive2 { name="DMRcaller"; version="1.30.0"; sha256="03d7rl5z1pxdwxya53mkf8a8n9jzp8rb8awhfhfd22dgdf2l327h"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; - DMRcate = derive2 { name="DMRcate"; version="2.12.0"; sha256="0iphlsbam5fcxbj5j0cmqk3wz5ykwz0mvk3qbrhzxbpf2h4w2qib"; depends=[bsseq DSS edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; - DMRforPairs = derive2 { name="DMRforPairs"; version="1.34.0"; sha256="1amrbmijqv0w96qc813abl12xr3sz8a92gfjwg7zm7l7dz2gjss9"; depends=[GenomicRanges Gviz R2HTML]; }; - DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.14.0"; sha256="1kjfpysf70lxc2sw0ggrnir91d6kl9gvc6vhx3ivzxah92zvp643"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; - DNABarcodes = derive2 { name="DNABarcodes"; version="1.28.0"; sha256="18sivwzl8gk52dnhwls0i4imw78rkjlwbfrcaas1i53q0bmw15i5"; depends=[BH Matrix Rcpp]; }; - DNAcopy = derive2 { name="DNAcopy"; version="1.72.3"; sha256="1kxzrny19dqd9pqj27vzr15i071sl8ivznpfd6zlqhcymlcsq7nw"; depends=[]; }; - DNAfusion = derive2 { name="DNAfusion"; version="1.0.0"; sha256="1b1k5gs1rfk02p9j7xl186ynvsxax8sc2l9r8vwr53w37x3fzh43"; depends=[bamsignals BiocBaseUtils GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; - DNAshapeR = derive2 { name="DNAshapeR"; version="1.26.0"; sha256="0cj1nff3kn0d5djddapn37gi47739c69r61wp9v3bcvwcvq6nlqa"; depends=[Biostrings fields GenomicRanges Rcpp]; }; - DOSE = derive2 { name="DOSE"; version="3.24.2"; sha256="0scp6sgb1iwwfh7gdak4dxf1hb870745km9nc9hga8pnsnqi5v3g"; depends=[AnnotationDbi BiocParallel fgsea ggplot2 GOSemSim HDO_db qvalue reshape2]; }; - DRIMSeq = derive2 { name="DRIMSeq"; version="1.26.0"; sha256="0cj3fyb99fh30f35ra1gpvzwplszbwvwk33ppgyh1zx2axsx164w"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; - DSS = derive2 { name="DSS"; version="2.46.0"; sha256="1qm0pq6495fn2zrbddaadb1w01ry76rg8mmbmxf3zws9pww48jgf"; depends=[Biobase BiocParallel bsseq]; }; - DTA = derive2 { name="DTA"; version="2.44.0"; sha256="0s7z24ka29ki3gvx0831k4cxlnismk6gh92rqg3sx4qk4srlplhx"; depends=[LSD scatterplot3d]; }; - DaMiRseq = derive2 { name="DaMiRseq"; version="2.10.0"; sha256="10qpr9p6sqljq05rc2gkh45yh5rsmkh51prqq349b3733d1ld03y"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; - DeMAND = derive2 { name="DeMAND"; version="1.28.0"; sha256="1x0hyna6qgz5w9y7j95wyyrvg7rx8pdpyp9dzmic7q0hycjmg33n"; depends=[KernSmooth]; }; - DeMixT = derive2 { name="DeMixT"; version="1.14.0"; sha256="02hkkxkj6fv4jxlq3mj1hxd1zi42pvis8ffcwxf25jk8j19j124c"; depends=[base64enc dendextend DSS ggplot2 KernSmooth knitr matrixcalc matrixStats psych Rcpp rmarkdown SummarizedExperiment sva truncdist]; }; - DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.40.0"; sha256="05rwqchfspy8i9fcj9526rl5vvk0rrgr95nvxzdj0sa2136my8y4"; depends=[ggplot2 limSolve pcaMethods]; }; - DeepBlueR = derive2 { name="DeepBlueR"; version="1.24.1"; sha256="0aqpn8rqqldkwhzzdpca704z0mi1bzm9f79wvk0ks5pfqk8imnfp"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; - DeepPINCS = derive2 { name="DeepPINCS"; version="1.6.0"; sha256="1n81lsllbbdkl97dlw7lnpg815siiwk3xsivdfy166dh5jm104yl"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; - DegNorm = derive2 { name="DegNorm"; version="1.8.2"; sha256="06lr37f5mqk4n5iy2z2qb6ilbcl71izlp92l5j5mfkclgy9nhnmi"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors viridis]; }; - DelayedArray = derive2 { name="DelayedArray"; version="0.24.0"; sha256="0nl1v0mxb759wiia2rsxay0cv0q631gqyzgaa10s175lhzsb8r6p"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Vectors]; }; - DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.14.0"; sha256="1r2fgww105433nk2r9sakqszh39l1zhh377wl5q9vnf00iasm2cr"; depends=[BiocGenerics DelayedArray S4Vectors]; }; - DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.20.0"; sha256="0qcn7rlq0bsj11sc31wzks2xv900fpmbsblxp9cng5lj5cn2djk3"; depends=[DelayedArray IRanges Matrix MatrixGenerics matrixStats S4Vectors sparseMatrixStats]; }; - DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.6.0"; sha256="15g6agzfcp64dqs0mi0fjggkn8cqi9d116j8i0kjpb9sjh9882i3"; depends=[BH DelayedArray dqrng Rcpp]; }; - DelayedTensor = derive2 { name="DelayedTensor"; version="1.4.0"; sha256="1lahwbgwnkiw98ij2vjvf81baas3s35i357392jz3ps8sw7m7vs8"; depends=[BiocSingular DelayedArray DelayedRandomArray einsum HDF5Array irlba Matrix rTensor]; }; - DepInfeR = derive2 { name="DepInfeR"; version="1.2.0"; sha256="0887lyqq6sc12c9rzida2r56mnbrw313wyysy7g5cf18bcd2xcmx"; depends=[BiocParallel glmnet matrixStats]; }; - DepecheR = derive2 { name="DepecheR"; version="1.14.0"; sha256="1j4gxgw1s3a0nm888k02qi1smxqsplc42827ks666md025h9bxcj"; depends=[beanplot doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; - DiffBind = derive2 { name="DiffBind"; version="3.8.4"; sha256="1gil19qk4wc695sl7r789xnqyv748n4jdhaighkjy5hfp9xaaax7"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; - DiffLogo = derive2 { name="DiffLogo"; version="2.22.0"; sha256="0n6nyw0vb0hvi9awpx6igdgdsfd91fs520aspbxlb33jcd3x0aaz"; depends=[cba]; }; - DifferentialRegulation = derive2 { name="DifferentialRegulation"; version="1.2.2"; sha256="17yjmsh2g0rbj2qw97kc63ym0djap0gpnpn2his8r77561zdn8yd"; depends=[BANDITS data_table doParallel doRNG foreach ggplot2 MASS Matrix Rcpp RcppArmadillo SingleCellExperiment SummarizedExperiment]; }; - Dino = derive2 { name="Dino"; version="1.4.0"; sha256="1jvhcs24bi0g0hzi3dk6ny6wq8h2950whkqimdqyyglwy7lcbz1f"; depends=[BiocParallel BiocSingular Matrix matrixStats S4Vectors scran Seurat SingleCellExperiment SummarizedExperiment]; }; - Director = derive2 { name="Director"; version="1.24.0"; sha256="0bnvagsqm5cm8l2g18fyavaf7s93hwfi75zmggxiy46xqn7s1718"; depends=[htmltools]; }; - DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.40.0"; sha256="009nnl3zwcsg6mh7wl3j856dpi7awkyxdy660rqmiskn7m2ah4l1"; depends=[BiocGenerics IRanges S4Vectors]; }; - DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.14.0"; sha256="1fky7w82zx1ynmzfrslsih2639ihhzlj0pa14bwzj1g7xr5p49bi"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; - DominoEffect = derive2 { name="DominoEffect"; version="1.18.0"; sha256="15k62maqj4kbv2184h5j0j8rkmbcskvmjjn8z26kw296ihifis6w"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; - Doscheda = derive2 { name="Doscheda"; version="1.20.0"; sha256="0y0lxbjd1kqds3rx77sb4agk8j35xh8k698assrbjjhwg5gjfgid"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; - DriverNet = derive2 { name="DriverNet"; version="1.38.0"; sha256="0sryp2w0lzalqhk2aizj0lrbxj60illfzg6vzg8isqzv9ic4gnqd"; depends=[]; }; - DropletUtils = derive2 { name="DropletUtils"; version="1.18.1"; sha256="0rshaskx9nwd57aliwhk9gc0h6ccrvzbaikyjpbdz1i1zf4fsf77"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR GenomicRanges HDF5Array IRanges Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; - DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.40.0"; sha256="13xry8cdcidc7g2hl30pwyi9gg1kx2zw7w504fncmjk9niz5m95w"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; - Dune = derive2 { name="Dune"; version="1.10.0"; sha256="03kjhck5ypydzz23cp5avah9kpz74i61v9mi89rr7wqdsad3zyif"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; }; - DynDoc = derive2 { name="DynDoc"; version="1.76.0"; sha256="0w8x997npnphd91s3nc9f0s4vb94ikszw5mrpf5lfv3n25sqgvhb"; depends=[]; }; - EBImage = derive2 { name="EBImage"; version="4.40.0"; sha256="1k6gbivwlai451whq2vr3c0shzs9p4g188jn5waw7973gdzdi00q"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; - EBSEA = derive2 { name="EBSEA"; version="1.26.0"; sha256="1pfcpawbax3ld4wwn98b13aqrwzdgz8k4x63ncckd2jdanq1l01r"; depends=[DESeq2 EmpiricalBrownsMethod]; }; - EBSeq = derive2 { name="EBSeq"; version="1.38.0"; sha256="1gh1cyb76gv2h0knh780648gsbgpn76adfj6x3pjzily5m5bmin0"; depends=[blockmodeling gplots testthat]; }; - EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.32.0"; sha256="1k6c2qc7xvv3f094zddjdbjj4hlfxsv04gf5b0zdphmrhbhb8r9m"; depends=[EBSeq]; }; - EBarrays = derive2 { name="EBarrays"; version="2.62.0"; sha256="0kg22appd9sd6knm129hchkamzilwr3h8wi4ibrvllbfmx31v9q8"; depends=[Biobase cluster lattice]; }; - EBcoexpress = derive2 { name="EBcoexpress"; version="1.42.0"; sha256="0was3sjr5q420inj42bl0ifyd55b2brzbv2nskswskar7myad3yn"; depends=[EBarrays mclust minqa]; }; - EDASeq = derive2 { name="EDASeq"; version="2.32.0"; sha256="0hx4als33lvdchz5s6cv2axvjyp0k8p3v0lm51jayhjcjpmihqzp"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; - EGAD = derive2 { name="EGAD"; version="1.26.0"; sha256="01wxhrfbmhabh8ci95c3drll7g9lc9zpgmlac5b5blp1ar60a2if"; depends=[Biobase GEOquery gplots igraph impute limma MASS plyr RColorBrewer RCurl zoo]; }; - EGSEA = derive2 { name="EGSEA"; version="1.26.0"; sha256="1cjld33vrnlm6l8ssg6x4w7b4ack2xa1lpy924phx64zv44fi3s9"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; - ELMER = derive2 { name="ELMER"; version="2.22.0"; sha256="1cyyl3596dqs3qyz2ngdlbz8pl8hr5y2gnh5yby8pab4z1sxpr79"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; - EMDomics = derive2 { name="EMDomics"; version="2.28.0"; sha256="0fz8p3g9cb25v25cmmkwldxijplcm1wn99aa9i7s0zi3i8426vv5"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; - ENmix = derive2 { name="ENmix"; version="1.34.02"; sha256="0rn541xfsxfdyzy3dn727bwrfpkgp12282lax7xg1j8584mk4pcf"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges matrixStats minfi preprocessCore quadprog RPMM S4Vectors SummarizedExperiment]; }; - ERSSA = derive2 { name="ERSSA"; version="1.16.0"; sha256="03ns14cbi1c9jcmxf4fhv5f7r7hvql33wz9n9ddcrn43xki8r6vw"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; - EWCE = derive2 { name="EWCE"; version="1.6.0"; sha256="1d2sw63i5jy1fa1q3cwdvd05xd8bb0k66zjdvpgsds9m7mvw75vb"; depends=[BiocParallel data_table DelayedArray dplyr ewceData ggplot2 HGNChelper limma Matrix orthogene reshape2 RNOmni SingleCellExperiment stringr SummarizedExperiment]; }; - EasyCellType = derive2 { name="EasyCellType"; version="1.0.0"; sha256="1xry2kgb7ha2hg82jap88px9xxcq609il85xi0k0gilla1swvjc1"; depends=[AnnotationDbi clusterProfiler dplyr forcats ggplot2 magrittr org_Hs_eg_db org_Mm_eg_db rlang]; }; - EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.26.0"; sha256="1vws49a204xkwixdvp5l62in7vxbpf4qsfcnm34zkc4kx5hval9j"; depends=[]; }; - EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.16.0"; sha256="1nbg2r097rz24ybzh9ww6myd6kc2rz02vbg6g0rb3dlng0002xsm"; depends=[ggplot2 ggrepel]; }; - EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.28.1"; sha256="0ikvs91qfswnyc2p6pn5b0n7rz0szx65pv0ywgzr94arm85gwirc"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; - EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.28.2"; sha256="03z0ya3qsg4drsjiqb5akbjivbsmqjv8r52y8nhrc5kqa04zffxk"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; - EpiCompare = derive2 { name="EpiCompare"; version="1.2.0"; sha256="0h0ap1xa0g57zh4djr263d97firklsvb6nwq0dk1h39j8wyp5j54"; depends=[AnnotationHub BiocGenerics BRGenomics ChIPseeker data_table genomation GenomeInfoDb GenomicRanges ggplot2 htmltools IRanges plotly reshape2 rmarkdown rtracklayer stringr]; }; - EpiDISH = derive2 { name="EpiDISH"; version="2.14.1"; sha256="02pf0y8sj1j48qfmfjckr4vx9rz3aypb6iydlpfvhcm829jr51cl"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; }; - EpiMix = derive2 { name="EpiMix"; version="1.0.1"; sha256="1rn6hpxxiw8n7im2dnb2x19ahvahljxac6853qkwxb7a8gwvwlad"; depends=[AnnotationDbi AnnotationHub Biobase biomaRt data_table doParallel doSNOW downloader dplyr ELMER_data EpiMix_data ExperimentHub foreach GenomeInfoDb GenomicFeatures GenomicRanges GEOquery ggplot2 impute IRanges limma plyr progress R_matlab RColorBrewer RCurl rlang RPMM S4Vectors SummarizedExperiment tibble tidyr]; }; - EpiTxDb = derive2 { name="EpiTxDb"; version="1.10.0"; sha256="152snn75nixdas9n3g80f32hmdrqdyv71cl8fkax5jl4mqrp6px5"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; }; - EventPointer = derive2 { name="EventPointer"; version="3.6.0"; sha256="0z9bcqfwi8mym1pwywmvdmiszw0whpz4svh7jgwjvza94z5w5ly5"; depends=[abind affxparser Biostrings BSgenome cobs doParallel fgsea foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq stringr SummarizedExperiment tximport]; }; - ExCluster = derive2 { name="ExCluster"; version="1.16.0"; sha256="0m635as5xigkjqlmwh32afbbxffjf6ahrr83gr8z886z365h4m81"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; - ExiMiR = derive2 { name="ExiMiR"; version="2.40.0"; sha256="02aw2kjpg2xfmx0xjphsalw81gixwd2yrw73rcbcxyz7fpq98c5h"; depends=[affy affyio Biobase limma preprocessCore]; }; - ExperimentHub = derive2 { name="ExperimentHub"; version="2.6.0"; sha256="1j71zmxwiz82gg6kii2bmynzwll1r6fmsq972kmvxvm6crpvi15s"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager curl rappdirs S4Vectors]; }; - ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.24.0"; sha256="0jkbp0pc6zjjwmklrd23grxrk200rw1wbd78w3qcicgzfnz90gar"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; - ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.8.0"; sha256="1jfzxca82cyd4hh4jk9nmwjwq608i8zs2nfjiclkpk0hh0bf6j22"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; }; - ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.10.0"; sha256="18dbcalpk4m8ziqksgp6kxd4gm8ip0l5sydnqfd7mjzymhvxsbv9"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; }; - ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.26.0"; sha256="0z9x1j9wrqqzqdg8c1vy20lgd9dfq9z74af813nkag8qph2nhnm9"; depends=[Biobase BiocStyle httr jsonlite limma RCurl S4Vectors SummarizedExperiment XML xml2]; }; - FCBF = derive2 { name="FCBF"; version="2.6.0"; sha256="124c25x18xkhyrizfzchj4xkg5hwdw3935gyibbvgxj6b3l1ph97"; depends=[ggplot2 gridExtra mclust pbapply SummarizedExperiment]; }; - FEAST = derive2 { name="FEAST"; version="1.6.0"; sha256="1yk2k0n6nafzh594rydnnpwmznv64iqan9p7137n72vpbcav9ql4"; depends=[BiocParallel irlba matrixStats mclust SC3 SingleCellExperiment SummarizedExperiment TSCAN]; }; - FELLA = derive2 { name="FELLA"; version="1.18.0"; sha256="09rl9zna99rydqk8vfdlmfx0g4cg0zaw27r153ll7hpcnnkx18z1"; depends=[igraph KEGGREST Matrix plyr]; }; - FGNet = derive2 { name="FGNet"; version="3.32.0"; sha256="1jg7qiq7fdlw2fg362sjhalrdbvqxxrzb0q7l6ih4vq6qxjlyyyz"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; - FISHalyseR = derive2 { name="FISHalyseR"; version="1.32.0"; sha256="18sj688bm80zldj6d6w1ic66pk2qzp7liwp9vjmh8a80i6xxlnkm"; depends=[abind EBImage]; }; - FLAMES = derive2 { name="FLAMES"; version="1.4.3"; sha256="01djq2gjaq8rhxdfalzpnwfbfyrcbyqykdbyb3mm0vmzalv3z5kr"; depends=[bambu basilisk BiocGenerics Biostrings circlize ComplexHeatmap cowplot dplyr DropletUtils GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gridExtra igraph jsonlite magrittr Matrix MultiAssayExperiment RColorBrewer Rcpp reticulate Rhtslib Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment stringr SummarizedExperiment tidyr withr zlibbioc]; }; - FRASER = derive2 { name="FRASER"; version="1.10.2"; sha256="17j9dfbdlycwdr2lnil507i5i4hdg7q6dv2mizgkzj6295k2h0dp"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; - FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.34.0"; sha256="0xnrrrhxdgcn6033kj1v780s7m58j2krc8hj1y554ddilf90jwy5"; depends=[fda MASS]; }; - FScanR = derive2 { name="FScanR"; version="1.8.0"; sha256="1i0w5ai5si9a4m3s96grm75wwdx5g2ah4vg0q95sgjj68gx4ln2c"; depends=[]; }; - FamAgg = derive2 { name="FamAgg"; version="1.26.0"; sha256="17avlg6x7kan3lq5ffvzq7lmrscnm0h5vj29hhspf6zn8gwpi86f"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; - FastqCleaner = derive2 { name="FastqCleaner"; version="1.16.1"; sha256="1xy4b1ppm9jlrxzzr18f0vcj91wpai328c1l49jkrz3cc6s0hap2"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; - FilterFFPE = derive2 { name="FilterFFPE"; version="1.8.0"; sha256="0i7737mzg557yg23h730pvxz1gx37blbh7krla4p4nqmic2qdrcy"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; - FindIT2 = derive2 { name="FindIT2"; version="1.4.0"; sha256="0cid8lvh5zck421ajfca320n4lxr7jafmipgcvk86zd89izz72pa"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; - FitHiC = derive2 { name="FitHiC"; version="1.24.0"; sha256="1c7jscl82knbh5ha1i1hlm46nnhz6aw5h0j5xnl4hlgx8mnn05fl"; depends=[data_table fdrtool Rcpp]; }; - FlowSOM = derive2 { name="FlowSOM"; version="2.6.0"; sha256="1s7xilhhc55igq0zmvpfzhnh5df8bzmm3daknz75xhzhhg5b7z1c"; depends=[BiocGenerics colorRamps ConsensusClusterPlus dplyr flowCore ggforce ggnewscale ggplot2 ggpubr igraph magrittr rlang Rtsne tidyr XML]; }; - FoldGO = derive2 { name="FoldGO"; version="1.16.0"; sha256="1b4h4gggxfv12lvxsjk1c8rn9rrlcl63p8p61i7wfbh3nkzx62r0"; depends=[ggplot2 tidyr topGO]; }; - FunChIP = derive2 { name="FunChIP"; version="1.24.0"; sha256="1wjbjmppizpgdxlkq19wa5v1yvkgh6cal2cqiby90267djq9m8y5"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; - FuseSOM = derive2 { name="FuseSOM"; version="1.0.1"; sha256="0wx7f7y81sr0qmz8sza1rpg3v8d9z6rc2z6df83ws1rwsaz5zn0f"; depends=[analogue cluster coop diptest fastcluster FCPS fpc ggplot2 ggplotify ggpubr pheatmap proxy psych Rcpp S4Vectors stringr SummarizedExperiment]; }; - GA4GHclient = derive2 { name="GA4GHclient"; version="1.22.0"; sha256="09kfjrsbz6sk3g304kqk0zy39v10sb758alyvajvjj7pfkdv67ak"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; - GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.20.0"; sha256="0zal12pb48hwam9zan1a865i5njrvzg9dc7mpd9jiffp7q9rrwi9"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; - GARS = derive2 { name="GARS"; version="1.18.0"; sha256="12mfqv9ag1rrig8wcpl5zwvb68j7g1cdrw5ynlkbrgxcwnibpmnq"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; - GAprediction = derive2 { name="GAprediction"; version="1.24.0"; sha256="0x2mkm6fq7772fql2whjp1xcf5pqi06ywzj8prb51yz8s8zqvzl2"; depends=[glmnet Matrix]; }; - GBScleanR = derive2 { name="GBScleanR"; version="1.2.9"; sha256="15gb2j5ha2b8566bldr090n9vbzy55abym1ax8cb0if0f3xj16rj"; depends=[expm gdsfmt ggplot2 Rcpp RcppParallel SeqArray tidyr]; }; - GCSscore = derive2 { name="GCSscore"; version="1.12.0"; sha256="11d8ygc8lfyzz7vmwvi6yy3lf6pd8fsichg6ki0lkp459nivbdi8"; depends=[affxparser Biobase BiocManager data_table devtools dplR RSQLite stringr]; }; - GDCRNATools = derive2 { name="GDCRNATools"; version="1.18.0"; sha256="0f2nqdcygpmcwjngadqxri3y87ylrg0f67ihg7gwd4afqsbckd62"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; - GDSArray = derive2 { name="GDSArray"; version="1.18.0"; sha256="1knaqi5pslqkkx7fd93vmkwcxii7rbyj13s89iy54snlw29lbchj"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; - GEM = derive2 { name="GEM"; version="1.24.0"; sha256="0lbs7igiq8v0y66pbr0jvxcadp7ni47mjynag7m352k87633nann"; depends=[ggplot2]; }; - GENESIS = derive2 { name="GENESIS"; version="2.28.0"; sha256="0lca67dxnwpignglimc67hpyhjg6ybwqz9sqhg4yqg6m05ym15fa"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; - GENIE3 = derive2 { name="GENIE3"; version="1.20.0"; sha256="096crx7n75x60s9sx3l7nld3yvrsqs0clvjsdarxc6bbn2qxk81i"; depends=[dplyr reshape2]; }; - GEOexplorer = derive2 { name="GEOexplorer"; version="1.4.0"; sha256="1gjb0xsfg745sckzwz0v4g1jh6ikwkbvb5k9cw15g3cnqc5xlqjl"; depends=[Biobase DT factoextra GEOquery ggplot2 heatmaply htmltools impute limma maptools pheatmap plotly scales shiny shinyBS shinybusy shinyHeatmaply stringr umap]; }; - GEOfastq = derive2 { name="GEOfastq"; version="1.6.0"; sha256="1k62g3k60rzddg6k7f88pkb19ip6zshm2ymi1gz10kf9xrfj0d97"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; - GEOmetadb = derive2 { name="GEOmetadb"; version="1.60.0"; sha256="09xfacrfdnnm43pi0a96zmw1awqgffq1izdyzpnjd23ks4hjw9hk"; depends=[GEOquery RSQLite]; }; - GEOquery = derive2 { name="GEOquery"; version="2.66.0"; sha256="0ck2aml1kxdahwcszi3j7hcikwi8fdnzphlrsn3h2q4dkk5x00kn"; depends=[Biobase curl data_table dplyr limma magrittr R_utils readr tidyr xml2]; }; - GEOsubmission = derive2 { name="GEOsubmission"; version="1.50.0"; sha256="1vqdh9nbib40xcwc2j239ijjdrlgyx20qb5ji99639v6ibia02wm"; depends=[affy Biobase]; }; - GEWIST = derive2 { name="GEWIST"; version="1.42.0"; sha256="1hkqv11apwhvg89ky792m6y0aml6hmxbqkk622r4zr1snkc6ggxw"; depends=[car]; }; - GGPA = derive2 { name="GGPA"; version="1.10.2"; sha256="1hxvrxd0bmffbqw70pxnjqrz3512c3mygsnf66s8cgjpmcrwcqc0"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; - GIGSEA = derive2 { name="GIGSEA"; version="1.16.0"; sha256="1gf4zzxcbh4g54div9ckjcx6yha74ilzqbmjzifjg1ybixy9d2mw"; depends=[locfdr MASS Matrix]; }; - GISPA = derive2 { name="GISPA"; version="1.22.0"; sha256="0j448iqr71hqbfv9r9f4rccy4phfhcgy7w8kij0idw2mjpvkpyvr"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; - GLAD = derive2 { name="GLAD"; version="2.62.0"; sha256="0gb52ic5r6nkgm2ynm174vcvbmkbhhjgv71lsmxpxzcsb6rr7qj6"; depends=[aws]; }; - GMRP = derive2 { name="GMRP"; version="1.26.0"; sha256="1q79q958wpfrl6q4g1yl6kxcw38817rpbdnjl4k4xzk3hf5jmd7h"; depends=[diagram GenomicRanges plotrix]; }; - GNET2 = derive2 { name="GNET2"; version="1.14.0"; sha256="0vhdn8nrp9fj2g1qdng0zdw5crmzcck3rwvvzcswh2p9pwg1cfzb"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; }; - GOSemSim = derive2 { name="GOSemSim"; version="2.24.0"; sha256="14wc7qgk1psknld05246cn0nqxpbjprax7j75h5yyd0w7hjyly2s"; depends=[AnnotationDbi GO_db Rcpp]; }; - GOSim = derive2 { name="GOSim"; version="1.36.0"; sha256="0hxy1x1mkygd0r7n38plpb3wj443kak413ml813zzmhvrs39zvnf"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; - GOTHiC = derive2 { name="GOTHiC"; version="1.34.0"; sha256="117vbz1yasav1p92x2wylmsc9kc5z0qv4jsvd1nf9b2ndxcrgxd5"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; - GOexpress = derive2 { name="GOexpress"; version="1.32.0"; sha256="1wccyfy8wkgns12r2mh7w6zfwjqiqhv1riyk0s4ivax2vyqmhb65"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; - GOfuncR = derive2 { name="GOfuncR"; version="1.18.0"; sha256="0d0xis4nns5icsr16w4ik2d95n3p2h93c47jvlp22crv7f4rlaa5"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; - GOpro = derive2 { name="GOpro"; version="1.24.0"; sha256="04kr02whakm65gqy1h4vxl9m6s9zl6hgwd3dfdk8106npyrjqlsb"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; - GOstats = derive2 { name="GOstats"; version="2.64.0"; sha256="07chyfkq8nwxjgnlrrwza8jw996dq0ki4bzdfalj9yl1iac1pnys"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; - GOsummaries = derive2 { name="GOsummaries"; version="2.34.0"; sha256="1fgalk4gs1vajax7zngq9caqdw0r9ryjz0vydjr4n21ypjbc9476"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; - GPA = derive2 { name="GPA"; version="1.10.0"; sha256="0gd7ln4xiagibzdzhfqy8m7v35yp6vm07xhbp7ky5ipq1j2nzpcc"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; }; - GRENITS = derive2 { name="GRENITS"; version="1.50.2"; sha256="16ryqvn2dw9c9cz5rnykv2k7rf5zm1v6llvcszzm7qj5mqzqx6jp"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; - GRaNIE = derive2 { name="GRaNIE"; version="1.2.6"; sha256="1j85520njf89bliw08lxq59h65493v8r58fz797a79i27qgfcwi1"; depends=[biomaRt Biostrings checkmate circlize colorspace ComplexHeatmap data_table DESeq2 dplyr forcats futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph limma magrittr Matrix matrixStats patchwork progress RColorBrewer readr reshape2 rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect topGO viridis]; }; - GRmetrics = derive2 { name="GRmetrics"; version="1.24.0"; sha256="08jjmlr1xiilfji6c42bcaf22vjvizhj1vgxxxzmda349cxyc1fv"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; - GRridge = derive2 { name="GRridge"; version="1.22.0"; sha256="0vmwm50dwk3im3qx40vh9ipmfqywzz5fmmm79b74zjcd3qjrznf3"; depends=[glmnet graph Iso mvtnorm penalized survival]; }; - GSALightning = derive2 { name="GSALightning"; version="1.26.0"; sha256="08zkd2vganx424g8kkp2ny9dzpggcvj53avsjk7gx2fr1l8zxhmd"; depends=[data_table Matrix]; }; - GSAR = derive2 { name="GSAR"; version="1.32.1"; sha256="0429kdwkknc5l7wq5akfy81qic3yrymchpbm7nbyzchrr6rhjs5b"; depends=[igraph]; }; - GSCA = derive2 { name="GSCA"; version="2.28.0"; sha256="0svf5cz8dq6ghv6qvpzrhziks9nchkg3izw3ivqnqgc9b7h54cds"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; - GSEABase = derive2 { name="GSEABase"; version="1.60.0"; sha256="0i8fliln3v9sw9x34pqafdx1z6jkys8b11fkz4ihmw8lc8lfd0x5"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; - GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.18.0"; sha256="11j46g9knb7da3xh5fq68w3d3z2h73w08dc7ml35a3336f52604w"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO S4Vectors SummarizedExperiment]; }; - GSEAlm = derive2 { name="GSEAlm"; version="1.58.0"; sha256="0xzywh8824xiggwgw88x2x83z75wwrajiv7qk7hgp1zw2mg2k15y"; depends=[Biobase]; }; - GSEAmining = derive2 { name="GSEAmining"; version="1.8.0"; sha256="0dlj9s2070bms5ih896sffniygcnwbvbq6wphiwsljgcs4fb94sf"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra rlang stringr tibble tidytext]; }; - GSRI = derive2 { name="GSRI"; version="2.46.0"; sha256="13nhiz25h66c8ql2mcdx9zvlvqyxvhvy2xcsh2z42jggrnbq026p"; depends=[Biobase fdrtool genefilter GSEABase les]; }; - GSReg = derive2 { name="GSReg"; version="1.32.0"; sha256="0zz1xlf3n0bwlvpn8r8bi5q54rjaj2clnzg773ksnc59nw1bkxzq"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; - GSVA = derive2 { name="GSVA"; version="1.46.0"; sha256="1vpnxcjd9npbmqpffdr6gl89b17jcjykkr725z9144xkaqclbw65"; depends=[Biobase BiocParallel BiocSingular DelayedArray DelayedMatrixStats GSEABase HDF5Array IRanges Matrix S4Vectors SingleCellExperiment sparseMatrixStats SummarizedExperiment]; }; - GSgalgoR = derive2 { name="GSgalgoR"; version="1.8.0"; sha256="176qh1cfmy1cv3773fhy5x0g7qx9rnawmkk7n77mikbp45c8yvi9"; depends=[cluster doParallel foreach matchingR nsga2R proxy survival]; }; - GUIDEseq = derive2 { name="GUIDEseq"; version="1.28.0"; sha256="0bvns0sqwmqybfjcy9cbdwm3gglf7fisllxmvqxk9ky270jc31zg"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 hash IRanges limma matrixStats multtest openxlsx patchwork purrr rio rlang Rsamtools S4Vectors stringr tidyr]; }; - GWAS_BAYES = derive2 { name="GWAS.BAYES"; version="1.8.0"; sha256="1h481k2sz3mbj5wq8xfi78gc97p2370yadj37pb0hw1mi460xx4c"; depends=[caret doParallel GA ggplot2 Matrix memoise Rcpp RcppEigen reshape2]; }; - GWASTools = derive2 { name="GWASTools"; version="1.44.0"; sha256="02fi0vqk554l3akh841lam4wfknzi31rpbgj560vjfgpwvhz5r9q"; depends=[Biobase data_table DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; - GWENA = derive2 { name="GWENA"; version="1.8.0"; sha256="1w27nwgs6087a5s0vh70365ikv60ahp3jvhridsqy9n038wp2yhq"; depends=[cluster dplyr dynamicTreeCut ggplot2 gprofiler2 igraph magrittr matrixStats NetRep purrr RColorBrewer rlist stringr SummarizedExperiment tibble tidyr WGCNA]; }; - GateFinder = derive2 { name="GateFinder"; version="1.18.0"; sha256="1s37haxmdh84fxqjvvb3dvaha8ds2khhnfk8z7jpsx1arzzlm9r0"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; - GenProSeq = derive2 { name="GenProSeq"; version="1.2.0"; sha256="1fmmyb2lhnnvr8s9l8pljrkpzlzhbchy0sv6q72lgqbnxr5p2a5f"; depends=[CatEncoders DeepPINCS keras mclust reticulate tensorflow ttgsea word2vec]; }; - GenVisR = derive2 { name="GenVisR"; version="1.30.0"; sha256="0vdcxf7haz0fack0fv6jd3lrbaqkla6ymlsx6158cwl767q8ms4c"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; - GeneAccord = derive2 { name="GeneAccord"; version="1.15.0"; sha256="1dlnqdcrl1fv5yf0zwfgkqfd2x19fv6q84p7c730nmnnaqal6md1"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; }; - GeneBreak = derive2 { name="GeneBreak"; version="1.28.0"; sha256="1rq7zw6d6i4qrich9g00pshily56y704q6llwgb39609m1h9828c"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; - GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.44.0"; sha256="16cgfw2fdggkzklb13qf7mravbjymg6yazl7q6iqdrkwlhpxl0f7"; depends=[Biobase]; }; - GeneGA = derive2 { name="GeneGA"; version="1.48.0"; sha256="136z3sxjps1k63ivr0cmqg7xkvbzf7j69vwkfbc1n00yfapiprm2"; depends=[hash seqinr]; }; - GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.24.0"; sha256="1j8jkg5cfkizd62rqmagwnmbi5f3c9bix7q5si115wxnc1nfc8cd"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; }; - GeneMeta = derive2 { name="GeneMeta"; version="1.70.0"; sha256="1ggjnbsmjnprdmbpcb0ghqaydr95d7vf9q27z0kg1mb6djd92n26"; depends=[Biobase genefilter]; }; - GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.40.0"; sha256="023ibp69gb322csc8g7yz2l1khhsh20zdqxf1apcv0mr5ils6nga"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; - GeneOverlap = derive2 { name="GeneOverlap"; version="1.34.0"; sha256="0ii3ymysqkhyvj204zigpgjny0cglggqmvw311gvgkdi16dib1qs"; depends=[gplots RColorBrewer]; }; - GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.54.0"; sha256="1q7fgxgak5fahmxy17ys3g3k1mqihinyhnm0f7dfvydmd25cfx84"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; - GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.42.3"; sha256="1r7q329v06yb36hcm89zcgv1skd9nk4g6yk8ngpl038i3hbh5yi8"; depends=[Biobase limma MASS]; }; - GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.18.0"; sha256="0kn3qgdzi6wdr6r34s646j082lv11hng71l8waqiip2xn7xqnjww"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; - GeneTonic = derive2 { name="GeneTonic"; version="2.2.0"; sha256="113h6s9xak7qpc6wgkr33sqr7s62xnx78ciz0jhhw4ya5vbh90pj"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap ComplexUpset dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; }; - GeneticsPed = derive2 { name="GeneticsPed"; version="1.60.3"; sha256="1j9p6gi0i34zwrgqbxiywc2ni6n7nm7jwi5wjzpdsz7ziq6p8fxp"; depends=[gdata genetics MASS]; }; - GenomAutomorphism = derive2 { name="GenomAutomorphism"; version="1.0.3"; sha256="1qz577a952srxa3mqnnlv4allha5yaqz4b7c4lai6v9i3zm1z52q"; depends=[BiocGenerics BiocParallel Biostrings data_table doParallel dplyr foreach GenomeInfoDb GenomicRanges IRanges numbers S4Vectors]; }; - GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.34.9"; sha256="0mn9ddm2xwc2b7zg0n9a056jcr61jv6v8jacxm3q8qmz6r30kfrb"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; - GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.34.1"; sha256="1c784ic85v64gflwwk22dh3f0m60q3z6y23d9jy3w8ydhda6gw0s"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; - GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.22.1"; sha256="1kl2g0x0831sviigpl2ch9hqii8sl0babyyfbfzll1dnxr1d9w4a"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang tibble xml2]; }; - GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.6.0"; sha256="0kknl7ras2wir8775m0spl8dya6pf68l1br14wzjrxxwsdlbfx7c"; depends=[Biostrings broom data_table dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges plyr reshape2 scales]; }; - GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.50.4"; sha256="1qsr433nh225pk5ngsrjrf2rfv7ynq4c8qsjfjr7khy2z9czlg6n"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; - GenomicFiles = derive2 { name="GenomicFiles"; version="1.34.0"; sha256="0k64m9f5y88p90wd87hy0ixj5ly5yi413al9p2bn10b1fjx2c451"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - GenomicInteractionNodes = derive2 { name="GenomicInteractionNodes"; version="1.2.0"; sha256="12mrnc2wpsj87qkff5kxz58058wzvr8s94pc98lvf8csha6sf6rc"; depends=[AnnotationDbi GenomeInfoDb GenomicFeatures GenomicRanges GO_db graph IRanges RBGL S4Vectors]; }; - GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.32.0"; sha256="0l14hz5pr0wlin46y8ycpvk5hp2ld9ajx11y85rw5hlwv50byfbb"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; - GenomicOZone = derive2 { name="GenomicOZone"; version="1.12.0"; sha256="0jq8llksadhls1174g22kjr0k5vdsz99k9h2ypwfji2j05c4843a"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; - GenomicRanges = derive2 { name="GenomicRanges"; version="1.50.2"; sha256="13b6bm6nrxx1vgzrzpf59c2lq5w8kjq9hsch5h037f0p9w3w5z9p"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; - GenomicScores = derive2 { name="GenomicScores"; version="2.10.0"; sha256="1sz0gmwc5iam83pxnc702pd5h6nsa46kb0wsqs8ysb1ximbkfh5h"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array httr IRanges rhdf5 S4Vectors XML]; }; - GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.6.0"; sha256="0mzwn9fchaxkpd4f85bj63gnwnrxba47slrcxmgv7a39b1yjh46y"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr irlba plotly S4Vectors SummarizedExperiment]; }; - GenomicTuples = derive2 { name="GenomicTuples"; version="1.32.0"; sha256="1wahzm5vk1l5gcj8y8ngkp9w1yzk0b5hsvx53mpcis08np9x64bk"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - GeoDiff = derive2 { name="GeoDiff"; version="1.4.2"; sha256="06dcy4ifvg2y4cbgbnxh5i3ap8b75cmxhrrz3qwr6crwlqxdr4w1"; depends=[Biobase GeomxTools lme4 Matrix NanoStringNCTools plyr Rcpp RcppArmadillo robust roptim testthat withr]; }; - GeomxTools = derive2 { name="GeomxTools"; version="3.2.0"; sha256="1rhld2s6ixq8djnqpmxjbibkrksxgvn4giyrqm8pmmkqy3awczs6"; depends=[Biobase BiocGenerics data_table dplyr EnvStats GGally ggplot2 lmerTest NanoStringNCTools readxl reshape2 rjson rlang S4Vectors SeuratObject stringr]; }; - GladiaTOX = derive2 { name="GladiaTOX"; version="1.14.0"; sha256="02svr9mnqzp3gy8gd5b5d53mc0gdw8vkdzyhxarq52bp711q8g03"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMySQL RSQLite stringr tidyr XML xtable]; }; - Glimma = derive2 { name="Glimma"; version="2.8.0"; sha256="1fskabpd3xlrbhqvzam9ibpxmbdys7y1b265np8hz4k704ww1g22"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; }; - GlobalAncova = derive2 { name="GlobalAncova"; version="4.16.0"; sha256="0z3c9kcd17chsnypl5kbrdaz1pdlaq687aq9y9yqasqp8bb8lqwv"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; - GmicR = derive2 { name="GmicR"; version="1.12.0"; sha256="08a296vyl3bcrak3bpgb7il1r8w1mf7hwhc1qvrxfjlj7w1v1yfm"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; - GraphAT = derive2 { name="GraphAT"; version="1.70.0"; sha256="1y4fbxvcrb6gndz69g17ya1ad11anbxbiymdvxp9rs363kg563ll"; depends=[graph MCMCpack]; }; - GraphAlignment = derive2 { name="GraphAlignment"; version="1.62.0"; sha256="004ivwdz8xdpvdakc9i32skh9f7rj8d5mf3r1ap2n1al53ymbjlj"; depends=[]; }; - GraphPAC = derive2 { name="GraphPAC"; version="1.40.0"; sha256="08kpnqpmicm3jydnx4p9yxmqf7rj4br8jsi6zv04qq4f3mz1l1ii"; depends=[igraph iPAC RMallow TSP]; }; - GreyListChIP = derive2 { name="GreyListChIP"; version="1.30.0"; sha256="02qzvs8fmh79g4cc5j2gxj1wazpmly7vjr527qlsgi3jmc3swxgz"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; - Guitar = derive2 { name="Guitar"; version="2.14.0"; sha256="0lrw1v82amr54bkfh98953b16fhlgd1i6kz1g7zy8gj0hd417ms1"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; - Gviz = derive2 { name="Gviz"; version="1.42.1"; sha256="01qs60sdh7c8cxkv3qbfcfwpjhab88j872va50fi95xsqnmj5isa"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; - HDF5Array = derive2 { name="HDF5Array"; version="1.26.0"; sha256="1y25mlsqf2inij6w2825xxl30bdba971az6rjf7j9bnya3gpvi6h"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Vectors]; }; - HDTD = derive2 { name="HDTD"; version="1.32.2"; sha256="1kavnjajd9a3qgzfgxrmk0jbl7hxdbz3cpwm386nk2ny5rg657v4"; depends=[Rcpp RcppArmadillo]; }; - HELP = derive2 { name="HELP"; version="1.56.0"; sha256="1j5wa3w32rsj4pzvx4dyg43m2kqmnxxyrd2gaplnq9riwgmqgs0j"; depends=[Biobase]; }; - HEM = derive2 { name="HEM"; version="1.70.0"; sha256="03m1ciknphvh6vf0jl2n53jjqdggjaakvfpyx6ba0zspa88pw2lk"; depends=[Biobase]; }; - HGC = derive2 { name="HGC"; version="1.6.0"; sha256="0lxjfzwcmksfrfgs49ad7idv93z7y7g35vir2sxacnmprs451nar"; depends=[ape dendextend dplyr ggplot2 Matrix mclust patchwork RANN Rcpp RcppEigen]; }; - HIBAG = derive2 { name="HIBAG"; version="1.34.1"; sha256="1nzq896qzcggm1ah7nkrbzp3dmb3mrz2pslw3xj6c60a9bbsi6kx"; depends=[RcppParallel]; }; - HIPPO = derive2 { name="HIPPO"; version="1.10.0"; sha256="136wsy70p87yva1ipdxg27gsz9mran9q9050frrx91d0fl1q7d94"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; - HIREewas = derive2 { name="HIREewas"; version="1.16.0"; sha256="1mrymcipll2rj8xkh0h7ggvkazdlrhw16px6kc4xfwkr65vs4p7g"; depends=[gplots quadprog]; }; - HMMcopy = derive2 { name="HMMcopy"; version="1.40.0"; sha256="0p1jn2lyvwy9kx83kmpxjma0fcar8gngp3hmv35qc2qa0ns6ji5v"; depends=[data_table]; }; - HPAStainR = derive2 { name="HPAStainR"; version="1.8.0"; sha256="0h2i5aihrwhka4qq5xka1l1k5kwx1sn2j0xccgiwkm27743y1l68"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; }; - HPAanalyze = derive2 { name="HPAanalyze"; version="1.16.0"; sha256="0kfmlsar5a8ypq412fzm473phadqy9s1icn1idwbk9hrv6a9h0ch"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; - HPiP = derive2 { name="HPiP"; version="1.4.0"; sha256="0rpfkkicc1bhzwxfkh29wz154vn651aydjvri9m8py0fw5lwjc21"; depends=[caret corrplot dplyr ggplot2 httr igraph magrittr MCL pROC protr PRROC purrr readr stringr tibble tidyr]; }; - HTSFilter = derive2 { name="HTSFilter"; version="1.38.0"; sha256="15fxsdh2zaz42i3zrpk8yrvgwg8f1jk8f184wjdrkw3jlxh46k55"; depends=[Biobase BiocParallel DESeq2 edgeR]; }; - HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.28.1"; sha256="08lychyrjmdc4vqyd8djzvhqhwiykskbbzjjb7nf4fw87x2485gm"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; - HTqPCR = derive2 { name="HTqPCR"; version="1.52.0"; sha256="1kclvh8f2sf534cjw07ry9nx74n6p7r0vmc3mk2nr37yvpf26b3q"; depends=[affy Biobase gplots limma RColorBrewer]; }; - Harman = derive2 { name="Harman"; version="1.26.0"; sha256="1gfdmcjgr3vnafyddcg8kvw0ls7303r2z7ql2lls31x4cz9las3w"; depends=[Ckmeans_1d_dp matrixStats Rcpp]; }; - Harshlight = derive2 { name="Harshlight"; version="1.70.0"; sha256="0asjgcnwawg8x7ql0srhb2011rvb4kr2cpsa1cy28nfmjfvdf0qm"; depends=[affy altcdfenvs Biobase]; }; - Heatplus = derive2 { name="Heatplus"; version="3.6.0"; sha256="0zbjw9f616dz1fpp6q6whbmlrf2gypq8pp9i66c376cs2aifp1si"; depends=[RColorBrewer]; }; - HelloRanges = derive2 { name="HelloRanges"; version="1.24.0"; sha256="049841bzm0mbj3vhy70yp1r4kc95lqn1yz52ld24b9m2svwzwzhc"; depends=[BiocGenerics BiocIO Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - Herper = derive2 { name="Herper"; version="1.8.1"; sha256="18jmxkw6j7y10958q48phs5hanw3aqdnjx64r9qymg8jbf4z5gnr"; depends=[reticulate rjson withr]; }; - HiCBricks = derive2 { name="HiCBricks"; version="1.16.0"; sha256="03m80snh7k7gmkjj19rxgch2bhwlwiibrpg3wc2gyqiv0007c6nl"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; }; - HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.6.0"; sha256="0kq6p1v4d29f9x1b1bfad4gqmi61cjv8h10lzlfkybiqvqgv717d"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; }; - HiCDOC = derive2 { name="HiCDOC"; version="1.0.0"; sha256="06814r4nmznixr9iq7kkfr5cj8wpgyfykscz454pvz3fzflfxvr1"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicRanges ggExtra ggplot2 ggpubr gridExtra gtools InteractionSet multiHiCcompare pbapply Rcpp rhdf5 S4Vectors SummarizedExperiment zlibbioc]; }; - HiCcompare = derive2 { name="HiCcompare"; version="1.20.0"; sha256="0hvv3bp0fk03bg7ndnr7j4p1a56xavbpl84941fngc45xybdqjmf"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq rhdf5 S4Vectors]; }; - HiContacts = derive2 { name="HiContacts"; version="1.0.0"; sha256="1sbvlfldfbill61vih6ankmqz63r9ym6p3l3j7fy8pl4q1bwv5xf"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicInteractions GenomicRanges ggplot2 ggrastr glue HiContactsData InteractionSet IRanges Matrix reticulate rhdf5 S4Vectors scales stringr tibble tidyr vroom]; }; - HiLDA = derive2 { name="HiLDA"; version="1.12.0"; sha256="0jlx7x06lrxh86sbkcnyabbv1g1jyf06dwj0wmlx9q1q7n0wn08d"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; - HiTC = derive2 { name="HiTC"; version="1.42.0"; sha256="10m3pq22a8m8bbfkmq5r44ydg2668g6dxmxp7km47jxgf9hlqhcl"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; - HilbertCurve = derive2 { name="HilbertCurve"; version="1.28.0"; sha256="09l6lllp0sqb1m7fgdxmq05ng4qr6817l360s7ly6cigkaylq6s1"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; - HilbertVis = derive2 { name="HilbertVis"; version="1.56.0"; sha256="15xql3rq1g2p0ih1ahjv2y9rwfrzrhj9f4sp7qrrhha9izas4v6d"; depends=[lattice]; }; - HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.56.0"; sha256="1x4clsjdg95wn4n65jyh1fyhnamma1897mq9jg16akvg7d48q60m"; depends=[HilbertVis]; }; - HubPub = derive2 { name="HubPub"; version="1.6.0"; sha256="014alfgyrqk8l74jsnz9lkjfiracrrdg7xv757qawvkwzl4phs89"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; - HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.14.0"; sha256="1jlq5np9sxdznxmbqjxlasx8ksy2lzhx98sf6svkxjw9p5qxpxlk"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; }; - HybridMTest = derive2 { name="HybridMTest"; version="1.42.0"; sha256="0mv092lq8548l306ghgvh8yka1fnyvs7w1yzfjzcchj8vlsb0qns"; depends=[Biobase fdrtool MASS survival]; }; - IHW = derive2 { name="IHW"; version="1.26.0"; sha256="04vbf42bzqydf5mi4mqmcyh0xdx4phs4cjhsm6fimhmjhxm8jyry"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; - ILoReg = derive2 { name="ILoReg"; version="1.8.0"; sha256="1zqlj87p641xi77vgdskxyspg2pnwmva3a4sn62w7r8blik4j3z1"; depends=[aricode cluster cowplot dendextend DescTools doRNG doSNOW dplyr fastcluster foreach ggplot2 LiblineaR Matrix parallelDist pheatmap plyr reshape2 RSpectra Rtsne S4Vectors scales SingleCellExperiment SparseM SummarizedExperiment umap]; }; - IMAS = derive2 { name="IMAS"; version="1.22.0"; sha256="1kc30iq5myxqx81kl9pkwm2lydg0n8prch7f4nvm175myyni0950"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; - IMMAN = derive2 { name="IMMAN"; version="1.18.0"; sha256="1kmpg3zlhdg9b4dgj2r1v67kdpj17383v85ycik35lvpa2dh9xa6"; depends=[Biostrings igraph seqinr STRINGdb]; }; - IMPCdata = derive2 { name="IMPCdata"; version="1.34.0"; sha256="1gasv2i11sfdsinpg46b1lmjc8g864wzjg3791zx43ls1qnslgdh"; depends=[rjson]; }; - INDEED = derive2 { name="INDEED"; version="2.12.0"; sha256="14ivj70sdzii9cqm5qh76r92i7pscr4scix7pn6s5zfs7g2z5sri"; depends=[devtools glasso igraph visNetwork]; }; - INPower = derive2 { name="INPower"; version="1.34.0"; sha256="07sjr0z3m1jchlxc1pqp97l4mydskbkh1xw41cwsw39r9ssimpni"; depends=[mvtnorm]; }; - INSPEcT = derive2 { name="INSPEcT"; version="1.28.0"; sha256="126cbanan2fr916spacw6lm8hzkys56k7z3gq0r351zd7q13gky3"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve gdata GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - IONiseR = derive2 { name="IONiseR"; version="2.22.0"; sha256="1xkxqavhcw22lhij87cpd5ps1ldkzzi0pp93d38pxbbhj15gc3d3"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; - IPO = derive2 { name="IPO"; version="1.24.0"; sha256="0hj1kprkkv9ab0akblb89ww0iwsqlnr0r6d8i079fif197ikfr08"; depends=[BiocParallel CAMERA rsm xcms]; }; - IRISFGM = derive2 { name="IRISFGM"; version="1.6.0"; sha256="1dhnv62p9crdrqi4kla33hykl4ag7agcb298ycgszc4h8mmslgrc"; depends=[AdaptGauss AnnotationDbi anocva clusterProfiler colorspace DEsingle DrImpute ggplot2 ggpubr ggraph igraph knitr Matrix MCL mixtools org_Hs_eg_db org_Mm_eg_db pheatmap Polychrome RColorBrewer Rcpp scater scran Seurat SingleCellExperiment]; }; - IRanges = derive2 { name="IRanges"; version="2.32.0"; sha256="0jvavhl6p2di0n5176gg7shfmpg79rngl2gaw423icswdf8kay89"; depends=[BiocGenerics S4Vectors]; }; - ISAnalytics = derive2 { name="ISAnalytics"; version="1.8.1"; sha256="0lshyr3mg3w3h4annx0ssjv9njlyz3z79gl3sw2dq0g7viipd6pv"; depends=[bslib data_table datamods dplyr forcats fs ggplot2 ggrepel glue lifecycle lubridate magrittr psych purrr Rcapture readr readxl rlang shiny shinyWidgets stringr tibble tidyr]; }; - ISLET = derive2 { name="ISLET"; version="1.0.0"; sha256="0iwcdvq5dzvdsiwchlmlzfay10x5ci35i905xkiil6a77l9s57iq"; depends=[BiocGenerics BiocParallel Matrix SummarizedExperiment]; }; - ISoLDE = derive2 { name="ISoLDE"; version="1.26.0"; sha256="07xw0cg121xcv85d4ah67a38x3y8h6gxx8zwrwqffp86vfzqwcgl"; depends=[]; }; - ITALICS = derive2 { name="ITALICS"; version="2.58.0"; sha256="0g937h9zxkxnm424wh58b46mfasdd7pqy5c04r0a46mx9lxibgbs"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; - IVAS = derive2 { name="IVAS"; version="2.18.0"; sha256="0nhmxxj0gdbsx18a2cn2905ylf1m6h514ak51fxfrl3krcjz3flr"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; - IWTomics = derive2 { name="IWTomics"; version="1.22.0"; sha256="18mdhld2m3pjfmnaryfvdaa0z6h87hjcy0dkx5vkpjn9ph0cc7pq"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; - Icens = derive2 { name="Icens"; version="1.70.0"; sha256="13ygc467nqh0235sf1ags1ihv7pg2yriva6qi7z46c534vxv6b8n"; depends=[survival]; }; - IdeoViz = derive2 { name="IdeoViz"; version="1.34.0"; sha256="0jpj8bkfm3jcb5fj0xhh13vqh2dcgdgi4i1qk3wx1301irkk7fgf"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; - IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.12.0"; sha256="1bzj6ckkwj430pwzy4nysk0k0vbjpa9mgibgabl03m7n33irxvza"; depends=[BH Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders SummarizedExperiment]; }; - ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.26.1"; sha256="18vsz5cc4nyf5jqwwmfbics5cahf38p48a7gd75xbf6q542vmg8n"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; }; - InPAS = derive2 { name="InPAS"; version="2.6.0"; sha256="1xbkz7g8yw43dbqkck42ikgrwi7yym39kbj65gpc4fyjyg5wkhln"; depends=[AnnotationDbi batchtools Biobase Biostrings BSgenome cleanUpdTSeq depmixS4 dplyr flock future future_apply GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma magrittr parallelly plyranges preprocessCore readr reshape2 RSQLite S4Vectors]; }; - InTAD = derive2 { name="InTAD"; version="1.18.0"; sha256="1fgrais14665nz0cbsmzgzawp6vzlv5v4qdbn56lvwfr4svd39ly"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; - Informeasure = derive2 { name="Informeasure"; version="1.8.0"; sha256="0ywffwxl3nx7w7p54ixlr058l92s2d17mrnfj9ngqxl7w3g16vfp"; depends=[entropy]; }; - IntEREst = derive2 { name="IntEREst"; version="1.22.2"; sha256="0cb3bwjcjh8ixqiys7279w12mwcx3fz5k31qpakc1mgj2nvgqsnf"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; - InterCellar = derive2 { name="InterCellar"; version="2.4.0"; sha256="1aqx98w4nnmb2xmrs70wqpywvq39qdmsna021ywxnyapd27w27l1"; depends=[biomaRt circlize colorspace colourpicker ComplexHeatmap config data_table dendextend dplyr DT factoextra fmsb fs ggplot2 golem htmltools htmlwidgets igraph plotly plyr readxl rlang scales shiny shinyalert shinycssloaders shinydashboard shinyFeedback shinyFiles signal tibble tidyr umap visNetwork wordcloud2]; }; - InterMineR = derive2 { name="InterMineR"; version="1.20.0"; sha256="0rp6fyhlk3dp22z5anfzx2fjw23azm4hajv67spayh8j8q9fsmkm"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; - InteractionSet = derive2 { name="InteractionSet"; version="1.26.1"; sha256="1nk8jhabbrirpyjd1wdy2fjk8y2qi1bsjmgqzh0qi1c83n0ccz5d"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; - InteractiveComplexHeatmap = derive2 { name="InteractiveComplexHeatmap"; version="1.6.0"; sha256="14slb0g72d8ikfl7f2ir6gmxdkry6gsjgh3irxgkkjy9q880zpqi"; depends=[clisymbols ComplexHeatmap digest fontawesome GetoptLong htmltools IRanges jsonlite kableExtra RColorBrewer S4Vectors shiny svglite]; }; - IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.20.0"; sha256="1l6bf5v1mvsmj4zqv19zfji52d6w1y08p1grqlzh6j01xjhvpz5a"; depends=[FGNet igraph knitr]; }; - IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.16.0"; sha256="1a298xaf8ricx09bv8hxy4d67ii57vz53rbac2kqszdg2pkfayzp"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; - IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.14.0"; sha256="1rm1vspgfd2733y1y828awz4hwn3qqhmfsx8lld6814iqrv63mxh"; depends=[IsoCorrectoR readxl tcltk2]; }; - IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.20.0"; sha256="06kcx0a7xxzqhf4y8l69my5chh06sfahsaz6anhana7shym3yif5"; depends=[Biobase BiocGenerics Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer RCurl readr reshape2 rtracklayer stringr tibble tximeta tximport VennDiagram XVector]; }; - KBoost = derive2 { name="KBoost"; version="1.6.0"; sha256="1w7m30dpjwbkgvvhvllgycnrzalah4lnan08xpr3cyx7nbr0pbsb"; depends=[]; }; - KCsmart = derive2 { name="KCsmart"; version="2.56.0"; sha256="1v7hl0lwr407fap71q8wsdz3d3ac2nq1blaz9wn8jb5j3yqkdwy3"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; - KEGGREST = derive2 { name="KEGGREST"; version="1.38.0"; sha256="0623p6px259v000pp14c2rknjgivx9c90b626q9bln0qw6wy97zc"; depends=[Biostrings httr png]; }; - KEGGgraph = derive2 { name="KEGGgraph"; version="1.58.3"; sha256="1s5j7zdp8ck4vhca81i4b6qclhwi56gmz8brawrxj3szvwmxf3y6"; depends=[graph RCurl Rgraphviz XML]; }; - KEGGlincs = derive2 { name="KEGGlincs"; version="1.24.0"; sha256="1xq10x5cirp2x3amrvprggsf8mvibfh40wa7fdnmkj8y2igf2r4z"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; - KinSwingR = derive2 { name="KinSwingR"; version="1.16.0"; sha256="051z4fcwis14ic4mz36d4aiixx3m6nndi2kj3yzykf1p1hwksq3g"; depends=[BiocParallel data_table sqldf]; }; - KnowSeq = derive2 { name="KnowSeq"; version="1.12.0"; sha256="0cxr3f67654h3nyjm4yaghw22wdb67jqg37685haffv1dkvfkcwl"; depends=[caret cqn e1071 edgeR ggplot2 gridExtra Hmisc httr jsonlite kernlab limma praznik R_utils randomForest reshape2 rlist rmarkdown stringr sva XML]; }; - LACE = derive2 { name="LACE"; version="2.2.0"; sha256="16z28avyljma30kpp4ygw76yc7h3brz4sldpr6zailnrqaxkrzmd"; depends=[biomaRt bsplus callr configr curl data_table data_tree doParallel dplyr DT foreach fs htmltools htmlwidgets igraph jsonlite logr Matrix purrr RColorBrewer readr Rfast shiny shinyBS shinydashboard shinyFiles shinyjs shinythemes shinyvalidate sortable stringi stringr SummarizedExperiment tidyr]; }; - LBE = derive2 { name="LBE"; version="1.66.0"; sha256="00460w36ayf0b9ln7v42i3wwmxyfy1hdm0snc01gaxf5276mvrai"; depends=[]; }; - LEA = derive2 { name="LEA"; version="3.10.2"; sha256="01w8s03ncscd17zpmqz7vjblz6kcag0mlgn7xhcjd0ghbfb7zkrf"; depends=[]; }; - LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.24.0"; sha256="0xhrdq5s5cn6vvp2h1pp871vncmxjkr9dmzb9hrykpc8pfvbj9w7"; depends=[CAMERA xcms]; }; - LOLA = derive2 { name="LOLA"; version="1.28.0"; sha256="00fk1drjwc7smbykq3qcl382qqd7kcjpcamklq48pqgy2mbjyk9d"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; - LPE = derive2 { name="LPE"; version="1.72.0"; sha256="06wmkwx633a3jjqhcp586x9jqic51sxyy11l8zhipzvj07fcsy70"; depends=[]; }; - LPEadj = derive2 { name="LPEadj"; version="1.58.0"; sha256="0cm8hdwfs0nrxyf6z1xwfjkpxawlh9mszmng4jakppcr9rl843ir"; depends=[LPE]; }; - LRBaseDbi = derive2 { name="LRBaseDbi"; version="2.8.0"; sha256="1fgvck20w1gix7slszgsjnss4b85mp0nkb9x4sl3a0nl9qfsjz1a"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; - LRcell = derive2 { name="LRcell"; version="1.6.0"; sha256="0n5z47b4gdfyrzqrjc7dw0ja2526k71axjr3001gdfm7mx09gvmv"; depends=[AnnotationHub BiocParallel dplyr ExperimentHub ggplot2 ggrepel magrittr]; }; - LedPred = derive2 { name="LedPred"; version="1.32.0"; sha256="11rjnc9l88hlfwz7ppmliisx3m55nllmnikxiwjr6a6fx7rbhnk4"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; - LinTInd = derive2 { name="LinTInd"; version="1.2.0"; sha256="0nxjy9lrfid73dspmxdpc7davcnckl63s9bl796r6vmwkkcqfy76"; depends=[ape BiocGenerics Biostrings cowplot data_tree dplyr ggnewscale ggplot2 ggtree IRanges networkD3 pheatmap purrr reshape2 rlist S4Vectors stringdist stringr]; }; - LineagePulse = derive2 { name="LineagePulse"; version="1.18.0"; sha256="197ki29dbnm5lidlp45nidvskxpa7mdhihmlfz6qkvnbfr8c3rhg"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; - LinkHD = derive2 { name="LinkHD"; version="1.12.0"; sha256="02yr5lmqxkpsgqfb1jjzy1cd9mfcg2q50szjji3mdadyg2c8i8rg"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; }; - Linnorm = derive2 { name="Linnorm"; version="2.22.2"; sha256="0snsvyy8d85panizm848mrmjpgyc06iqp39d19rny3fphq3adwn5"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; - LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.52.0"; sha256="0jf0njw4xib0wf24k2g64jg3agglf0jc9fymcjvagc70z9pm18k3"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; - LoomExperiment = derive2 { name="LoomExperiment"; version="1.16.0"; sha256="1bjqg5krzxm3v1mcy208ccbs2d1aljkbpav6qz6zgwmwpsci99dz"; depends=[BiocIO DelayedArray GenomicRanges HDF5Array Matrix rhdf5 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; - LowMACA = derive2 { name="LowMACA"; version="1.28.0"; sha256="0j5233xziszwak65rypd9f8lsp25sdr4j5nm5kanj4d4wd0zsdqv"; depends=[BiocParallel Biostrings cBioPortalData data_table gridBase httr LowMACAAnnotation motifStack plyr RColorBrewer reshape2 stringr]; }; - LymphoSeq = derive2 { name="LymphoSeq"; version="1.26.0"; sha256="1wlyk3gpy7j5ml3n3xs6mmxi9bv1ixs6gw7i2rkb513wnrxb9bg7"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; - M3C = derive2 { name="M3C"; version="1.20.0"; sha256="1djgbnxsdp1w9hhc6346gmvad3x8avy8nc85gpvg9i4x52wcrn4j"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; }; - M3Drop = derive2 { name="M3Drop"; version="1.24.0"; sha256="1h8y27d0dnmg4k31wl2k556r4h7n7iq2536770z7ci0ir0i0y4b6"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist statmod]; }; - MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.12.0"; sha256="1lxq7fanfypbzrh2il4ib9fplz6hmr0y3cdg9waplvrf1scqc8pp"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; }; - MACSr = derive2 { name="MACSr"; version="1.6.0"; sha256="0ksbmj8jh87nb60h1lfwz4gx40lpryc125dh554wsy48i0kv82cs"; depends=[AnnotationHub basilisk ExperimentHub reticulate S4Vectors]; }; - MADSEQ = derive2 { name="MADSEQ"; version="1.24.0"; sha256="025ny68gcsd5pbj9g8vrnzymgq52nq72zbwsvgjl7f2b6jnbd6w9"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; - MAGAR = derive2 { name="MAGAR"; version="1.6.0"; sha256="145xnlnkpqmb18jawwizr53y4lw9d1nxc4k60lpvl2z2fn8hm3v5"; depends=[argparse bigstatsr crlmm data_table doParallel ff HDF5Array igraph impute jsonlite plyr reshape2 rjson RnBeads RnBeads_hg19 snpStats UpSetR]; }; - MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="2.2.0"; sha256="1p58hcsmhgia1rlr064nfbd3kf0rlmnvabxlr2hpkw8b1hmcvrz0"; depends=[Biobase clusterProfiler depmap DOSE enrichplot ggplot2 ggrepel gridExtra msigdbr pathview reshape2]; }; - MAI = derive2 { name="MAI"; version="1.4.0"; sha256="01cpiiwzxkar8zr4q6bs2mbkh1hqszr71gzmbbp9z0b88805arm8"; depends=[caret doParallel e1071 foreach future future_apply missForest pcaMethods S4Vectors SummarizedExperiment tidyverse]; }; - MAIT = derive2 { name="MAIT"; version="1.32.0"; sha256="0i5n1bjc8bn4cx5b17d57m6fhk4m486cqnj6cn1zyyw0zy8z5sg4"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; - MANOR = derive2 { name="MANOR"; version="1.70.0"; sha256="16b30bmyzml97cjdbh6h9ky5c4h5ws2a3g2xkxnd55sd3jg64jgx"; depends=[GLAD]; }; - MAST = derive2 { name="MAST"; version="1.24.1"; sha256="1c0lc4abnb859x481ky6d3kc9zzxwvf4kqgwxyqapc4g72b4vh65"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; - MBASED = derive2 { name="MBASED"; version="1.32.0"; sha256="09v229vgxwhf3vx8nx2zb0g6rzqgfs91w44ly5y5r8rq2n9qa0lz"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; - MBAmethyl = derive2 { name="MBAmethyl"; version="1.32.0"; sha256="06jhcv8nw21qnzbf9law4dvrgga47di02q3124sf5v365zasnzr5"; depends=[]; }; - MBCB = derive2 { name="MBCB"; version="1.52.0"; sha256="1376537z1hzc3wb791nr13icp1h04z4jmfga2kszxsza4iw01hnr"; depends=[preprocessCore tcltk2]; }; - MBECS = derive2 { name="MBECS"; version="1.2.0"; sha256="10pyc41h3r2z5f0r7l7cg0cdyaxc2psm4q2d08dsddh8lpyc4v85"; depends=[cluster dplyr ggplot2 gridExtra limma lme4 lmerTest magrittr Matrix pheatmap phyloseq rmarkdown ruv sva tibble tidyr vegan]; }; - MBQN = derive2 { name="MBQN"; version="2.10.0"; sha256="138a7qfqcy904vlycbaif3wn9k1iwjafwvadbm3nscpz4k9x7phb"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rmarkdown SummarizedExperiment xml2]; }; - MBttest = derive2 { name="MBttest"; version="1.26.0"; sha256="0jgyigd60bbqrkg640i6lv2lx6k52il0k9lnrcg67v5z0xrhrrqx"; depends=[gplots gtools]; }; - MCbiclust = derive2 { name="MCbiclust"; version="1.22.0"; sha256="09sl5bk56wgs0hih492n4qscdc6nx68w6nx0cxr0pjhdvgrybli0"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; - MDTS = derive2 { name="MDTS"; version="1.18.0"; sha256="1jbkv7fpqla3l9hpr1g6yn152653agvmnpcljgnl01mx392xnblf"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; - MEAL = derive2 { name="MEAL"; version="1.28.0"; sha256="17wy534ir65vjv69m55pd6vvfdhyl5w170wbm91r5l7ri1y0r9sl"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; - MEAT = derive2 { name="MEAT"; version="1.10.0"; sha256="150cs39xf0fnvwh76vvhf6f6ill5gqmh7cf2svhi19lldg4a569n"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; }; - MEB = derive2 { name="MEB"; version="1.12.0"; sha256="0axd2kahwy5sc6pp2bxdi4ahb6mwfsgbhbcm51l3g5jr898z8xia"; depends=[e1071 SummarizedExperiment]; }; - MEDIPS = derive2 { name="MEDIPS"; version="1.50.0"; sha256="1zb0w4d6qvzrb5xp0bfcc2mfxyj618ghw3ifhx9yhl7pqp8c8ny1"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; - MEDME = derive2 { name="MEDME"; version="1.58.0"; sha256="0qli5ipyv3q5qvpmp1cdqvgzl6giarg458apqyspzapwvvnn9967"; depends=[Biostrings drc MASS]; }; - MEIGOR = derive2 { name="MEIGOR"; version="1.31.0"; sha256="134253lygmwszxq2bj38iydd44rkas10cbjnz3dikn90gg0xhada"; depends=[CNORode deSolve Rsolnp snowfall]; }; - MGFM = derive2 { name="MGFM"; version="1.32.0"; sha256="0ih7hkziajyf9flxg0grfydqylvk0qr7v1wrbp1wyfh2d1bkl8l9"; depends=[annotate AnnotationDbi]; }; - MGFR = derive2 { name="MGFR"; version="1.24.0"; sha256="0r7gka30g17v22rsc059p6fwdcdpyb7n2pl93prpbkpv39lzcik3"; depends=[annotate biomaRt]; }; - MIGSA = derive2 { name="MIGSA"; version="1.21.0"; sha256="0b7w9lzi8xb1vzh7zahw7wh9jm7x1y04rs2gvvjmfbdfw085rdpm"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev jsonlite limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz vegan]; }; - MIMOSA = derive2 { name="MIMOSA"; version="1.36.0"; sha256="10c07s0l2hshcvy4ym3mgq7k9569l5am2k4mx83wxwicidv607hi"; depends=[Biobase coda data_table dplyr Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape rlang scales testthat tidyr]; }; - MIRA = derive2 { name="MIRA"; version="1.20.0"; sha256="0709kl7m1nj5jbvlsr4hfk5pr268vgvig8wq353wc7wqwq0j1yhn"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; - MLInterfaces = derive2 { name="MLInterfaces"; version="1.78.0"; sha256="0xnaghm65ydk01gzx5g38jyq7vfdw206c2w59k0qg8lhy9fqky9x"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter magrittr MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny SummarizedExperiment threejs]; }; - MLP = derive2 { name="MLP"; version="1.46.0"; sha256="024h8mrwpfp6nkdzk6y6v0jhng1z78h47mxb36gy1mbklhknllbv"; depends=[AnnotationDbi gplots]; }; - MLSeq = derive2 { name="MLSeq"; version="2.16.0"; sha256="040gm8bnp110mhj05whkdrfl46lrm82fkyh6zba50aap8s2mp2b4"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma pamr plyr sSeq SummarizedExperiment testthat VennDiagram xtable]; }; - MMAPPR2 = derive2 { name="MMAPPR2"; version="1.12.0"; sha256="0rvhvsyg2g1i8kipvg83c19nyr7xj061fnda9j771mbgagcbwma5"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; }; - MMDiff2 = derive2 { name="MMDiff2"; version="1.26.0"; sha256="0rhnlzci5zs2if3lzzn2nif3x72a42fpxkm6v83d3krw9kb9jvvd"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; - MMUPHin = derive2 { name="MMUPHin"; version="1.12.1"; sha256="0vpap3avmrjy187s3dva6f008al6d935kpdf816xzl5gxl7zvf62"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor stringr tidyr]; }; - MODA = derive2 { name="MODA"; version="1.24.0"; sha256="17bfazy4wxb8idrn8frf43nrggn5n0w4bsxzmlhxjq0jm0c9ki25"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; - MOFA2 = derive2 { name="MOFA2"; version="1.8.0"; sha256="1i8i7n9iki16nmwmh5fs9afj0vqls38sj7vgxjacdsldcdwxz6h0"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; - MOGAMUN = derive2 { name="MOGAMUN"; version="1.8.0"; sha256="0rpz06rvxxxsgwb6xnk65mp2kz4jvhsr06qvkkknmyxc7q66ycb0"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; - MOMA = derive2 { name="MOMA"; version="1.10.0"; sha256="048lvnqa3wpi4bg7j8kh8dl358zppzrb3xg5ghdgk99xbanwmkqy"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; }; - MOSim = derive2 { name="MOSim"; version="1.12.0"; sha256="0x49p6f9q6vc8yn5nql9ryjd85zcimw3hy8n5wklwpx4bc3xadjs"; depends=[Biobase dplyr ggplot2 HiddenMarkov IRanges lazyeval matrixStats purrr rlang S4Vectors scales stringi stringr tibble tidyr zoo]; }; - MPFE = derive2 { name="MPFE"; version="1.34.0"; sha256="0xr4cpvr83c7mmcbm99bbgg05qd20y5vha73m4if4d8ba1l7k2mv"; depends=[]; }; - MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.16.0"; sha256="1pgl0q4il2ywnbdb8pmhrwqlmjk4i5xkv8va933748fijy194pw8"; depends=[BiocParallel progress SummarizedExperiment]; }; - MQmetrics = derive2 { name="MQmetrics"; version="1.6.0"; sha256="0ch0qcgdzdz0035b2nm468q0vsvk9blws6szq7261znfvwmqpzxw"; depends=[cowplot dplyr ggforce gghalves ggplot2 ggpubr ggrepel gridExtra gtable knitr magrittr plyr purrr RColorBrewer readr reshape2 rlang rmarkdown scales stringr tidyr]; }; - MSA2dist = derive2 { name="MSA2dist"; version="1.2.0"; sha256="1248xchv7nk47w1lp61nqyhmmrfnm9vgjiiwn7ikb417hxcryay7"; depends=[ape Biostrings doParallel dplyr foreach GenomicRanges IRanges Rcpp RcppThread rlang seqinr stringi stringr tibble tidyr]; }; - MSPrep = derive2 { name="MSPrep"; version="1.8.0"; sha256="05bq27v2iwmrf92y6fyzczvnrwmpqy5b7faa3z4si68fhpa81p2s"; depends=[crmn dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; }; - MSnID = derive2 { name="MSnID"; version="1.32.0"; sha256="1ljhxbyq5pa32sh44f06cwcdq79xh5nm51bpx1i8xig3bvwyg7p9"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; - MSnbase = derive2 { name="MSnbase"; version="2.24.2"; sha256="0jdq41rhn9qyhxfihvrgim76fzdrycc02wjsjdrff42gmray49w7"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; - MSstats = derive2 { name="MSstats"; version="4.6.5"; sha256="12gxr7615fp4yks0mqs6ikzhalihf0bq7kkc7sflpjqgzdv3jmws"; depends=[checkmate data_table ggplot2 ggrepel gplots limma lme4 marray MASS MSstatsConvert preprocessCore Rcpp RcppArmadillo statmod survival]; }; - MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.8.3"; sha256="1488vl6ijnb415510pa381206xjwzn64bjvvz4vm0s80h6bzpsix"; depends=[checkmate data_table log4r stringi]; }; - MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.6.0"; sha256="1hg9bjx9rwsdpj65mzd931lbyj4gb26x32mly4n1gkk1rf6iplry"; depends=[ggplot2 minpack_lm Rcpp]; }; - MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.4.1"; sha256="0hj10r3x1pql0497x3clk9wlv8xvbcvbv35q45x1ki8hfc5b3ifc"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; }; - MSstatsPTM = derive2 { name="MSstatsPTM"; version="2.0.3"; sha256="1n0hf9xxqpq5yp23hdlv0ki919m69adr6a0m7577zx0icg30c0gy"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringr]; }; - MSstatsQC = derive2 { name="MSstatsQC"; version="2.16.0"; sha256="1x55d2saf8y45pp4rsln6km8iqzv14pzrsw3bjc2x6z67v837f5i"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; - MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.18.0"; sha256="0mbflhwlvrq18k6gavsj2d32ihxgnaww8zdncadxwnlgv6p083kd"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; - MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.12.0"; sha256="1xwb8bm92jlm2q1047v02x9v69h305l940s2a8dxjqpb42bhg1nf"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; }; - MSstatsShiny = derive2 { name="MSstatsShiny"; version="1.0.10"; sha256="16a42xw5cyd9dv4mnsldnkqwpc2rc2lcc40xjar36az756idm89w"; depends=[data_table dplyr DT ggplot2 ggrepel gplots Hmisc htmltools marray MSstats MSstatsConvert MSstatsPTM MSstatsTMT shiny shinyBS shinybusy shinyjs tidyr uuid]; }; - MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.6.1"; sha256="1h5vdyg3sifi33i6airssraf2pljqmnh2l3xjyq18vjcbcs4bgzi"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; }; - MVCClass = derive2 { name="MVCClass"; version="1.72.0"; sha256="1yzb7m7vk50f9x1g8yb95wlmpccj3n4qgczz46lvhsk7hkifybzq"; depends=[]; }; - MWASTools = derive2 { name="MWASTools"; version="1.22.0"; sha256="1j6ixgir3mjx8xdclh2wisp82xx6ardm4rm6cz6ihdss2y34w6wi"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; - Maaslin2 = derive2 { name="Maaslin2"; version="1.12.0"; sha256="0ncvsywn9f8766gjb8nxzg82p3w30g8pjs85sy8s0bz9ilanpy89"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lme4 lmerTest logging lpsymphony MASS metagenomeSeq optparse pbapply pcaPP pheatmap pscl robustbase vegan]; }; - Macarron = derive2 { name="Macarron"; version="1.2.0"; sha256="14fbijbjs73piprh6irlclr4yv87waiw6wv91sz5iw1pxrhp7pli"; depends=[BiocParallel data_table DelayedArray dynamicTreeCut ff logging Maaslin2 plyr psych RCurl RJSONIO SummarizedExperiment WGCNA xml2]; }; - MantelCorr = derive2 { name="MantelCorr"; version="1.68.0"; sha256="0d42m4zbc6pzfph2ydb11rcxq7h64fvv286zx1vh2scvi8j9655a"; depends=[]; }; - MassArray = derive2 { name="MassArray"; version="1.50.0"; sha256="0jxlnl466dgbn0817h5vk5h52cblyq1r48pvk9v76dzdc86llskx"; depends=[]; }; - MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.64.1"; sha256="0p8cd4r3c8va5gybs1vlm3kn7jcg1xg529hvvg27fybb3g91nvqg"; depends=[]; }; - MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.10.0"; sha256="05a83gh5bvgadi2msgql5nmcgr8zp398rhdbmiqna608hqbymyq9"; depends=[matrixStats]; }; - MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.6.1"; sha256="1l0wnfyg3wgjr35qrqdh1916bklbvf7s43nsc05vqfsccs9a9a7k"; depends=[ComplexHeatmap dplyr ggplot2 Hmisc htmlwidgets impute imputeLCMD limma MASS pcaMethods plotly proDA rlang rmarkdown Rtsne shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vsn]; }; - MatrixRider = derive2 { name="MatrixRider"; version="1.30.0"; sha256="1y4h57n7bg6hmaszq1bzf1qlyl2p378928inca7s68ygigibsh6l"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; - MeSHDbi = derive2 { name="MeSHDbi"; version="1.34.0"; sha256="1lg13vqlw3ibjpssbgwg1mpy778v22xnrr92wjfqpn8s4h057z9f"; depends=[AnnotationDbi Biobase RSQLite]; }; - MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.70.0"; sha256="1j6scmghs6mmi0wyfxy6hsf363r90wy7njq1334xaq4crbj3kag9"; depends=[]; }; - Melissa = derive2 { name="Melissa"; version="1.14.0"; sha256="005am6j14nxp0qwyvg870349szpybx3p0fmyiwjl3zghzma41xfa"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; }; - Mergeomics = derive2 { name="Mergeomics"; version="1.26.0"; sha256="1svw7jk4xv0xm66qr5w2m2fz9k4ifd8dv52b5157p5apv45jdd45"; depends=[]; }; - MesKit = derive2 { name="MesKit"; version="1.8.0"; sha256="04c6y9hv49db4dy8iv122lvawhc9f8vj66ipzh6qfvgbhqm8lgc0"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; }; - MetCirc = derive2 { name="MetCirc"; version="1.28.0"; sha256="1vpn9mpn6fyrvnp4rfc37s5z80bamb73d2w8484x1aim3vl467ly"; depends=[amap circlize ggplot2 MsCoreUtils S4Vectors scales shiny Spectra]; }; - MetID = derive2 { name="MetID"; version="1.16.0"; sha256="1zxhqvx6zhy8zxckih3pnafzqyivygq2iw5scvv0cv01hhkj1ac5"; depends=[ChemmineR devtools igraph Matrix stringr]; }; - MetNet = derive2 { name="MetNet"; version="1.16.0"; sha256="0d52ib51j44ic8zy0x1hmmi0q1l71n03qcra7sza0d46dpna6k8g"; depends=[BiocParallel bnlearn corpcor dplyr GeneNet GENIE3 ggplot2 parmigene psych rlang S4Vectors stabs SummarizedExperiment tibble tidyr]; }; - MetaCyto = derive2 { name="MetaCyto"; version="1.20.0"; sha256="007lwh9yxvvdr5xhnrz3krh6v9vfi386jh1040x2cnw2x5p2hjjd"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; - MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.18.0"; sha256="1gjjp5qlmv26sd3fvrd8cgv3invckxr8ldjpizpqm4mxjzifxwpm"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; }; - MetaPhOR = derive2 { name="MetaPhOR"; version="1.0.0"; sha256="12imh3zwgrcaqc6gb0p6jhhb37km8j7n6cfp3d5s1rhcg2c180kx"; depends=[clusterProfiler ggplot2 ggrepel pheatmap RCy3 RecordLinkage stringr]; }; - MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.12.0"; sha256="08m1a3gpl2zx8yw60h3y430jflagcl7c5gn9wljl043vr84rnxpi"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; }; - Metab = derive2 { name="Metab"; version="1.32.0"; sha256="0qllncdvvab093gns9jb39kqvb4v8mm61aiva4hmy5hc2sk32blv"; depends=[pander svDialogs xcms]; }; - MetaboAnnotation = derive2 { name="MetaboAnnotation"; version="1.2.0"; sha256="03731wq7vx52l986fg32mw42f95mvzmrarppnrjfg80dwsnj9qgp"; depends=[BiocGenerics BiocParallel CompoundDb MetaboCoreUtils MsCoreUtils ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; - MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.6.0"; sha256="14y53snkyis1njx0vr7hy9jmn4lbw72k14x74spmsslcik2zadav"; depends=[MsCoreUtils]; }; - MetaboSignal = derive2 { name="MetaboSignal"; version="1.28.0"; sha256="1771mmdlk1i17lx51fcjv0lifc11rkk6x6qv5k03bq1fka5nfnnl"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; - MethCP = derive2 { name="MethCP"; version="1.11.0"; sha256="099jaadjfalvxpwq3k630yrqa1dfbp8rqn2fahz1rsha3y5z9bys"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; }; - MethPed = derive2 { name="MethPed"; version="1.26.0"; sha256="02vjnxzl72np2skgr6kj2vfkpf9i1ll0sdicfajr5rgsjzlnjpjh"; depends=[Biobase randomForest]; }; - MethReg = derive2 { name="MethReg"; version="1.8.0"; sha256="09vzarsmjm06fvgay0ysmi5f81g921dx513i1w2s6k97d8zv7z3f"; depends=[AnnotationHub DelayedArray dplyr ExperimentHub GenomicRanges ggplot2 ggpubr IRanges MASS Matrix plyr progress pscl readr rlang S4Vectors sesame sesameData sfsmisc stringr SummarizedExperiment tibble tidyr]; }; - MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.30.0"; sha256="1rz12vh0j96wh7chzbk88f97fbg49g433ahb0c55lkgqn6ql7r1g"; depends=[Biostrings gplots seqinr stringr]; }; - MethylAid = derive2 { name="MethylAid"; version="1.32.0"; sha256="1kzfwvjb8rzv5jghvzgfc9p85727b0v13lc8dibn4016mgap06vk"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; - MethylMix = derive2 { name="MethylMix"; version="2.28.0"; sha256="0687kfbcj11x5idbdkkhymqxjl2f2k877wqzx506djmxlbqgac60"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; - MethylSeekR = derive2 { name="MethylSeekR"; version="1.38.0"; sha256="0db4fxli829x3na4adzmk41rf3zwp33xzmj49w9n9c8s8k5bhagj"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; - Mfuzz = derive2 { name="Mfuzz"; version="2.58.0"; sha256="01kdccfjs01a2ya22g9zig78pjvi96aq9d14js8jvf8h868wmffz"; depends=[Biobase e1071 tkWidgets]; }; - MiChip = derive2 { name="MiChip"; version="1.52.0"; sha256="1ichljymsal8mnanqck89243lwpf184r47jknd56ksvpn2s6a0ja"; depends=[Biobase]; }; - MiPP = derive2 { name="MiPP"; version="1.70.0"; sha256="08ini3nj077k7knp3zsmw33yc0wpsnszd75dnp9vdn141d1kvsmx"; depends=[Biobase e1071 MASS]; }; - MiRaGE = derive2 { name="MiRaGE"; version="1.40.0"; sha256="19jgv2sgqiqqyqcbfivj8a4qrb18ryyl74rpp3805iisx44rnbkl"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; - MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.4.0"; sha256="1pl2kd24h88xs0asby3zz2agx64carkd0sjm5l3mj1340b77qk5l"; depends=[clusterProfiler config DT enrichplot ggplot2 golem htmltools magrittr shiny shinycustomloader shinyWidgets]; }; - MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.10.3"; sha256="02f26km8za90b3a7d7ym7bmx954jy3i1z81plkr0dy5wihk4lc8g"; depends=[ape Biostrings cli coin data_table dplyr dtplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree ggtreeExtra magrittr MASS patchwork pillar plyr rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; - MineICA = derive2 { name="MineICA"; version="1.38.0"; sha256="0qfk61qfw94r3ynzzvqxr9flswxbrfriw3n3yv499gk33cswb459"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; - MinimumDistance = derive2 { name="MinimumDistance"; version="1.42.0"; sha256="0r59a27nl6l28ck3mm4icpahplgxqpqzibiahw265fsl8yzx2zk7"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; - MobilityTransformR = derive2 { name="MobilityTransformR"; version="1.2.0"; sha256="0i8ljpjhvvfa1wg8ycm9pl0l0v3zwr4q7yr4n99nb88d54z89a5q"; depends=[MetaboCoreUtils MSnbase Spectra xcms]; }; - ModCon = derive2 { name="ModCon"; version="1.6.0"; sha256="1whwmf7qma0xz8bjqww6vr2idazgqlykd5mmf0xzryr1xdfbk54h"; depends=[data_table]; }; - Modstrings = derive2 { name="Modstrings"; version="1.14.0"; sha256="0r9smk5026pv6487xna1qsv9a6lc044xpzslbrddxyhgv0d8dz2m"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; - MoonlightR = derive2 { name="MoonlightR"; version="1.24.0"; sha256="17xff4sp4raqwcqgl2fc1j0k2s299cd3g0d5kdmmily7wvjnfrgz"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; - Motif2Site = derive2 { name="Motif2Site"; version="1.2.0"; sha256="19qjkcqrsag2gycwqmmn19d2vnkn2graa8sidhi1vl0nna5ycm36"; depends=[BiocGenerics Biostrings BSgenome edgeR GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS mixtools S4Vectors]; }; - MotifDb = derive2 { name="MotifDb"; version="1.40.0"; sha256="122ifxmbi0v3192cd9chq265i3dyw3hzwsndq3w97f4d68vll7gl"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; - MouseFM = derive2 { name="MouseFM"; version="1.8.0"; sha256="0cp0y793d4mvz5kh7rl7ysl969qvwg7dvrvqjh2i9hax47s865jg"; depends=[biomaRt curl data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gtools httr IRanges jsonlite reshape2 rlist scales tidyr]; }; - MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.6.1"; sha256="1kvjqn97ccjfpvvla7v4cql085nb53ndwixysqp55x2sab5hj8r3"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; - MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.6.0"; sha256="0r02fl6fq0g7l7mdlza89x1zkm3c16sf4wr1yrqygfmxf47q58xa"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; - MsBackendMsp = derive2 { name="MsBackendMsp"; version="1.2.0"; sha256="122s5agwac8wzsdj1igjyk8dgi5vgxd2bhymcp61sx5l1x7c0678"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; - MsBackendRawFileReader = derive2 { name="MsBackendRawFileReader"; version="1.4.0"; sha256="13bkjbk5h4dr719942bghiqprrkgwg7z82vh88cn8jf8vg2bd43d"; depends=[BiocParallel IRanges MsCoreUtils rawrr S4Vectors Spectra]; }; - MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.10.0"; sha256="1shrvb2vmvk1m6xk59jqpvrxi8vzcr978aalbx1gjcmaqf6abzcq"; depends=[clue MASS Rcpp S4Vectors]; }; - MsExperiment = derive2 { name="MsExperiment"; version="1.0.0"; sha256="031j106yaf1nal7nf5avg6kg216w3fplcnici8j45dwfd31kjis9"; depends=[IRanges ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; - MsFeatures = derive2 { name="MsFeatures"; version="1.6.0"; sha256="1q1224w31wdaagfv8ysc1w0d0n34y547c0jzkff1vxri9pb0w1j1"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; }; - MuData = derive2 { name="MuData"; version="1.2.0"; sha256="0xi8ldjv7nij11fggaqk91wdyf1nbv66hzqxy3y67hj0rkqxakv5"; depends=[DelayedArray Matrix MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - Mulcom = derive2 { name="Mulcom"; version="1.48.0"; sha256="0r900mhq2yi7gv1y9vh9lvaz97mk785ih8lvndncg0q6xg0mfq4v"; depends=[Biobase fields]; }; - MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.24.0"; sha256="00lhnqa4yz3lm5kl79bghad93iijihnassy2caf87czc540why09"; depends=[Biobase BiocBaseUtils BiocGenerics DelayedArray GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; - MultiBaC = derive2 { name="MultiBaC"; version="1.8.0"; sha256="0a3snl5djp9z0ggd39dmz0qgr0cvapsd2zs3xbwqah3dxafwsh2k"; depends=[ggplot2 Matrix MultiAssayExperiment pcaMethods plotrix ropls]; }; - MultiDataSet = derive2 { name="MultiDataSet"; version="1.26.0"; sha256="1qja5xd42wh8qbcil4hhnmh9zlby2gfglax2qbf5bzg3h6yzpy4g"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; - MultiMed = derive2 { name="MultiMed"; version="2.20.0"; sha256="09snrrgifz5wl9a0av87rccq8fh1d03h38i6x2lfmpak5m1vc270"; depends=[]; }; - MungeSumstats = derive2 { name="MungeSumstats"; version="1.6.0"; sha256="1sng3gra750pa0nm1jfpri2pha9n8rs1ncn42ddjfm330w45wqpg"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr IRanges jsonlite magrittr R_utils RCurl rtracklayer stringr VariantAnnotation]; }; - MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.8.1"; sha256="0d0fsc4x8psfd93asi2d5kq1888s963d3s8kcihd5knqah000mh8"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; }; - NADfinder = derive2 { name="NADfinder"; version="1.22.0"; sha256="0gbcfyda6liqimd4rcjbmfcjj4zymibfm94g46xv75ahypf5rm6z"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; - NBAMSeq = derive2 { name="NBAMSeq"; version="1.14.0"; sha256="12axvrs0zbp82n4lv89299vm6v696352d0jzm398vpbkdk3jn6y2"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; - NBSplice = derive2 { name="NBSplice"; version="1.15.0"; sha256="0yn7s7igshall34cflmdwvmknv8h1zdi6vg8svvcyn9fvzlgjdm8"; depends=[BiocParallel car edgeR ggplot2 MASS reshape2]; }; - NCIgraph = derive2 { name="NCIgraph"; version="1.46.0"; sha256="06y04lbp1wn1w9xy3lsqcdsycp4cdlrcyhga5kn1a4skb48bc6rc"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; - NOISeq = derive2 { name="NOISeq"; version="2.42.0"; sha256="1j0yafl5r1vsn99zkhvaz2mrwv37l4p8ldgiq09d9hxpjq9ls7i2"; depends=[Biobase Matrix]; }; - NPARC = derive2 { name="NPARC"; version="1.10.1"; sha256="09xh883v929zabr6g1prr80885b4q0mhlvlw9mlycprrd8l2qch9"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; }; - NTW = derive2 { name="NTW"; version="1.48.0"; sha256="0vx5swxmw76vba5wwl1qjyyb2dm7vg9wa7jsky93knhdl0s2fli9"; depends=[mvtnorm]; }; - NanoMethViz = derive2 { name="NanoMethViz"; version="2.4.2"; sha256="0qfw2smqqv6pj0a34plbxgdk49zh6nbf2r077hldbmp23ml6l6qj"; depends=[AnnotationDbi assertthat BiocSingular bsseq cpp11 data_table dplyr e1071 forcats fs GenomicRanges ggplot2 ggrastr glue limma patchwork purrr R_utils Rcpp readr rlang Rsamtools RSQLite S4Vectors scales scico stringr SummarizedExperiment tibble tidyr withr zlibbioc]; }; - NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.28.0"; sha256="1fjmp78q3hsnslarb7w39r3kcvf8m9jrzcw4na6k55dqp5917lys"; depends=[Biobase matrixStats Rcpp]; }; - NanoStringNCTools = derive2 { name="NanoStringNCTools"; version="1.6.1"; sha256="1frx2gi1gjhy2hdwi2dgys9dxsg3mi50kylbc16iyxyp9ff1aghr"; depends=[Biobase BiocGenerics Biostrings ggbeeswarm ggiraph ggplot2 ggthemes IRanges pheatmap RColorBrewer S4Vectors]; }; - NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.30.0"; sha256="1wfqrnbz2wcgxf2hz67z39zgy41m0ygf8a7gk1x22ry8y2irkipm"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; - NanoTube = derive2 { name="NanoTube"; version="1.4.0"; sha256="0gyjlj15bymib12b8j5ng66h6ixqj9w2arcd3x042djfqnx2crj9"; depends=[Biobase fgsea ggplot2 limma reshape]; }; - Nebulosa = derive2 { name="Nebulosa"; version="1.8.0"; sha256="1irjgvvycw1kx2nisqn7982hn843v4jncld7j712hv0kn2py3hn6"; depends=[ggplot2 ks Matrix patchwork Seurat SingleCellExperiment SummarizedExperiment]; }; - NeighborNet = derive2 { name="NeighborNet"; version="1.16.0"; sha256="04yxkrc2qscx9ckday90b6hmar4zfqjdan0phmpgv622spnk16f3"; depends=[graph]; }; - NetActivity = derive2 { name="NetActivity"; version="1.0.0"; sha256="0jf406i34n4j3mx3x9543h5a8pngbj5hsl62kx38f387bvki6zb3"; depends=[airway DelayedArray DelayedMatrixStats DESeq2 NetActivityData SummarizedExperiment]; }; - NetPathMiner = derive2 { name="NetPathMiner"; version="1.34.2"; sha256="1rccjw6gvjv63w6f4ywy1x4d6iiqgv66grjgbnx3jc6qf6cacmlk"; depends=[igraph]; }; - NetSAM = derive2 { name="NetSAM"; version="1.38.0"; sha256="0d3b2h0d8d9zdqa1wjn3a6r55aa978gma4ajf7pgbp1p0y81smm8"; depends=[AnnotationDbi biomaRt DBI doParallel foreach GO_db igraph R2HTML seriation survival WGCNA]; }; - NeuCA = derive2 { name="NeuCA"; version="1.4.0"; sha256="0v6m022y7xb70f5z5hzsdg2rv5gdsldjd34bni8k9r8fd04d2q18"; depends=[e1071 keras limma SingleCellExperiment]; }; - NewWave = derive2 { name="NewWave"; version="1.8.0"; sha256="13zwn5qzh9mjhp6d72yndymwbmi4hb7s8qg6ji0nmqp53gj30lc8"; depends=[BiocSingular DelayedArray irlba Matrix SharedObject SingleCellExperiment SummarizedExperiment]; }; - NoRCE = derive2 { name="NoRCE"; version="1.10.0"; sha256="0bmqgpiwm65wqr5wr6il131kllzpxc0mgx38adrncggcgxx3risg"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors stringr SummarizedExperiment tidyr zlibbioc]; }; - NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.16.0"; sha256="0fhm924r32sw5kjnpj9s79c6s6davb97whi2g8m62aii3c9di2zc"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; }; - NormqPCR = derive2 { name="NormqPCR"; version="1.44.0"; sha256="09cj78p7d11sichaxh5cgvd44i7mv8fs71j4sjianzky9y19474y"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; - NuPoP = derive2 { name="NuPoP"; version="2.6.3"; sha256="1wxr0ixgdxmsscd2l1wqzi8w5z4njfzzq9n2vvlwb5nkk0b41ky4"; depends=[]; }; - NxtIRFcore = derive2 { name="NxtIRFcore"; version="1.4.0"; sha256="1k923fqfjqfhlp648bs09xm1nb23gmh8n4y9jkdrdf05czyl73az"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array IRanges magrittr NxtIRFdata plotly R_utils Rcpp RcppProgress rhdf5 rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; - OCplus = derive2 { name="OCplus"; version="1.72.0"; sha256="0517ib36cppxwf8kpyxcrm5hnvzd2z1gpahslfr7cns1r3si0byr"; depends=[interp multtest]; }; - ODER = derive2 { name="ODER"; version="1.4.0"; sha256="09zvr01cgwc3rbqlbj8dr6yh4ghv1yha6ygl222458iq8vcwf6cv"; depends=[BiocFileCache BiocGenerics dasper data_table derfinder dplyr GenomeInfoDb GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyr purrr rtracklayer S4Vectors stringr tibble]; }; - OGRE = derive2 { name="OGRE"; version="1.2.0"; sha256="0rnrg6xwi9xgxyzzk1qkyqh4k9yzq4q6wpliwgp8myf37yb8sjcy"; depends=[AnnotationHub assertthat data_table DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges rtracklayer S4Vectors shiny shinyBS shinydashboard shinyFiles tidyr]; }; - OLIN = derive2 { name="OLIN"; version="1.76.0"; sha256="060d4hflnrk17vs651cfh2dazyc6avp3gjvp9w52y8jbfnnwyvqg"; depends=[limma locfit marray]; }; - OLINgui = derive2 { name="OLINgui"; version="1.72.0"; sha256="0rqrzaz052kggi970whqiaf6sjs66dfcys1jrmx3909fz65cz9mg"; depends=[marray OLIN tkWidgets widgetTools]; }; - OMICsPCA = derive2 { name="OMICsPCA"; version="1.16.0"; sha256="0kirg4xnj19igyyxzybdjl3y833zniki2s20lcg6ygsr7kmrc1g4"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; - OPWeight = derive2 { name="OPWeight"; version="1.20.0"; sha256="17lhz1sf158y5adsw9ibww6jdmrsqihm6g9nhk673wvd8i9kg3s4"; depends=[MASS qvalue tibble]; }; - ORFhunteR = derive2 { name="ORFhunteR"; version="1.6.0"; sha256="0220mwfpxals7p03l11banpg7i593bxmk3dqp63jfx40m7v1x6v6"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; }; - ORFik = derive2 { name="ORFik"; version="1.18.2"; sha256="06n09q44r34qw5dcjgd711pi4v1jpzd61v0dg1jan9cz48q3gg2d"; depends=[AnnotationDbi BiocGenerics BiocParallel biomaRt biomartr Biostrings BSgenome cowplot data_table DESeq2 fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gridExtra httr IRanges jsonlite R_utils Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment xml2]; }; - OSAT = derive2 { name="OSAT"; version="1.46.0"; sha256="1w86yf0bxrrfmmqknw59z2p2a0gfpnf54r139isd3irk0jhwwk50"; depends=[]; }; - OTUbase = derive2 { name="OTUbase"; version="1.48.0"; sha256="029f1hjvl5wzydn6k7436hhmgvhf7wgnmacf9wvar6gfj09n9n7d"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; - OUTRIDER = derive2 { name="OUTRIDER"; version="1.16.3"; sha256="0dv01xhj5dar20swvr3av6f1g26l4ic80v8vx23vw2sysrwdv14n"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; }; - OVESEG = derive2 { name="OVESEG"; version="1.14.0"; sha256="1lbv1p3pwggn1i75w4xkf4nfd4ff1fd9qkm65l7g7d98jinwa1wm"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; }; - OmaDB = derive2 { name="OmaDB"; version="2.14.0"; sha256="0hvsang8qlddd8andinl6p5ip823bg08c146p72glfa87bkf8xh6"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; - OmicCircos = derive2 { name="OmicCircos"; version="1.36.0"; sha256="0lqv04hjc2z3qnq4ijd9iym3mlbvxrhrxpaxdhs6w9dd32b8n8mh"; depends=[GenomicRanges]; }; - OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.14.0"; sha256="0wax0bplaibb27cvvqab3lpjb7qzy66dc5fs10mxadcbihl48fsb"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; }; - Omixer = derive2 { name="Omixer"; version="1.8.0"; sha256="080x94lhqml1fwvs0n8j6kvy2v2x3ij64960lhwjf8k1r8vyq4d5"; depends=[dplyr forcats ggplot2 gridExtra magrittr readr stringr tibble tidyselect]; }; - OmnipathR = derive2 { name="OmnipathR"; version="3.5.25"; sha256="1a0d4vf8i45h1fifswx9lhk6fk0z8sxfnav35psz9kvmxxab9698"; depends=[checkmate crayon curl digest dplyr httr igraph jsonlite later logger magrittr progress purrr rappdirs readr readxl rlang rmarkdown rvest stringr tibble tidyr tidyselect withr xml2 yaml]; }; - OncoScore = derive2 { name="OncoScore"; version="1.26.0"; sha256="01qrlifbhfnq5liyiqa05pwjcr659v2i32ns2g6hc2crcf7nf5zz"; depends=[biomaRt]; }; - OncoSimulR = derive2 { name="OncoSimulR"; version="4.0.2"; sha256="0mpr15b2mxr4j1j18iylra3xvxif5yp57b5jc2cfz89bmkhn6rn2"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; }; - OpenStats = derive2 { name="OpenStats"; version="1.10.0"; sha256="1jr0yshp4qy1869kv2cncy77kqnb2vi3m4cdh0v79w062qxbi7p7"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; - OrderedList = derive2 { name="OrderedList"; version="1.70.0"; sha256="06vl8miwzwl2i0ik3p50fs9z65d65bd793z5kvnn80dk2zbnj6qk"; depends=[Biobase twilight]; }; - Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.26.0"; sha256="1hawn8pp63kal5ml0sm3h1j1wnkq02z64sliyaf6apv7vl60ja9g"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang RSQLite S4Vectors tibble]; }; - OrganismDbi = derive2 { name="OrganismDbi"; version="1.40.0"; sha256="11l1xqwbqs129vxd6lxdaizpp6j08spyh6799rv5wqmlymap1ykw"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; - Oscope = derive2 { name="Oscope"; version="1.28.0"; sha256="0454f9yc0jmg3mcq9264wb5v2n8n0kaf801hlvsiy1xa3baj3h29"; depends=[BiocParallel cluster EBSeq testthat]; }; - PAA = derive2 { name="PAA"; version="1.32.0"; sha256="1zyms2s98bhjjl8bx86yznn87k8sv7dgadpgfall279q7av3vkgb"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; - PADOG = derive2 { name="PADOG"; version="1.40.0"; sha256="1irx2cv9k0wcx4aq1liyka9badgf4f20rxis7y4jz9wd9hhakilx"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; }; - PAIRADISE = derive2 { name="PAIRADISE"; version="1.14.0"; sha256="1mpz4afz6mx7a696pylzlar2jspkflkp15g4kzvk1sjkmwb6k9pj"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; }; - PANR = derive2 { name="PANR"; version="1.44.0"; sha256="0ma44mv7v0bcdzgzg575ky8h1mdffk426r18gjcg3v5xbjjargw5"; depends=[igraph MASS pvclust RedeR]; }; - PAST = derive2 { name="PAST"; version="1.14.0"; sha256="0mbqw5kffv7jfz37ydfmbwgcxf7baxghsbs163fpi9qksn37d1v7"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; }; - PCAN = derive2 { name="PCAN"; version="1.26.0"; sha256="0ya9s06dxrwzw0d4r08h5nddklyw3qbgwffbinwy84vgipkki0cz"; depends=[BiocParallel]; }; - PCAtools = derive2 { name="PCAtools"; version="2.10.0"; sha256="1r32ajjmrhlwl0ylwavlfzph6m01mq3y7r87x8mbkmqw9ld1y2fd"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; }; - PDATK = derive2 { name="PDATK"; version="1.6.0"; sha256="1s6j4j4s5vq2zfiz0axzmxcvfypwhn6wr1f0pm6f6kfaymkpp1xb"; depends=[BiocGenerics BiocParallel caret clusterRepro ConsensusClusterPlus CoreGx data_table dplyr genefu ggplot2 ggplotify igraph MatrixGenerics matrixStats MultiAssayExperiment piano plyr pROC RColorBrewer reportROC rlang S4Vectors scales SummarizedExperiment survcomp survival survminer switchBox verification]; }; - PECA = derive2 { name="PECA"; version="1.34.0"; sha256="1yp4nw6agcrcy0ib4c293hd4j2waw5x7zjn2x175n3dq02hplpvq"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; - PERFect = derive2 { name="PERFect"; version="1.12.0"; sha256="1l9p2cs8hypihrl57bsyszzk9kwlp03pl3pskhgwsn5vzjmfgymg"; depends=[fitdistrplus ggplot2 Matrix phyloseq psych sn zoo]; }; - PFP = derive2 { name="PFP"; version="1.6.0"; sha256="06fg96phldv4rlkq4zrmvkkc19r57f7c9vrq51g8p54byj58rjbp"; depends=[clusterProfiler ggplot2 graph igraph KEGGgraph magrittr plyr tidyr]; }; - PICS = derive2 { name="PICS"; version="2.42.0"; sha256="0snl32fk5vglww4rh3nmai86kxc55qwnhvbad2gqk821xh1idl70"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; }; - PING = derive2 { name="PING"; version="2.42.0"; sha256="1j4jx9lr1kia7880xvv87mv72ish490sn4kirkpp4jzcz3n99bh6"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; - PLPE = derive2 { name="PLPE"; version="1.58.0"; sha256="1v30v0i3awq8vfid77hgcwxallq0swarvrsszs1jff9wq9gnr6vi"; depends=[Biobase LPE MASS]; }; - POMA = derive2 { name="POMA"; version="1.8.0"; sha256="0ll61s9ylymsha2mvys36hr3ximx91ldbzb4k34gmy8rxjgb2ima"; depends=[broom caret ComplexHeatmap dbscan DESeq2 dplyr ggplot2 ggrepel glasso glmnet impute limma magrittr mixOmics randomForest RankProd rmarkdown SummarizedExperiment tibble tidyr uwot vegan]; }; - POWSC = derive2 { name="POWSC"; version="1.6.0"; sha256="08cahszklxj42cpaklzil7q3jkmrigsqkbbklfkq74q8sa65ry3j"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; }; - PPInfer = derive2 { name="PPInfer"; version="1.24.2"; sha256="16nkqn6d8pakkbl3r2rvxzfjcsx5calyjcxnysy3g84lflv4lfid"; depends=[biomaRt fgsea ggplot2 httr igraph kernlab STRINGdb yeastExpData]; }; - PREDA = derive2 { name="PREDA"; version="1.44.0"; sha256="1j2v7h7xajdlmbvi397qrn61w6zvrckql7hzzk0bhly3lcfsr5ij"; depends=[annotate Biobase lokern multtest]; }; - PROMISE = derive2 { name="PROMISE"; version="1.50.0"; sha256="0981l0yssnfjlxdqjv4r0a7a4gp01v1zqrpk9c19c1hpklzjzn9s"; depends=[Biobase GSEABase]; }; - PROPER = derive2 { name="PROPER"; version="1.30.0"; sha256="1fx832vinc5rfb52g2f62480sga3lh6hslz19v6whjadrqaxi1kv"; depends=[edgeR]; }; - PROPS = derive2 { name="PROPS"; version="1.20.0"; sha256="1arz8wq4k3dzsqzq39g95pyl934h3kdyqh2hahjpb2qpz0dnr1mk"; depends=[Biobase bnlearn reshape2 sva]; }; - PROcess = derive2 { name="PROcess"; version="1.74.0"; sha256="1vnj82yhc949hbn6crbqq6jk919b7fc43vrr4bbqls0czdajs42l"; depends=[Icens]; }; - PSEA = derive2 { name="PSEA"; version="1.32.0"; sha256="1rx7p8k6rwdx5lclz85h5qabkl0lvjprk6cx8xaaabg2g1i4d99y"; depends=[Biobase MASS]; }; - PSMatch = derive2 { name="PSMatch"; version="1.2.0"; sha256="03nkkx0chmz4ms9zkhjdjylzk4i3s1r51h955nn2qr236vi5h60p"; depends=[BiocGenerics BiocParallel igraph Matrix MsCoreUtils ProtGenerics QFeatures S4Vectors]; }; - PWMEnrich = derive2 { name="PWMEnrich"; version="4.34.0"; sha256="02rjdq4sbbb3w91p2k8bbbwwgb4caipbkj338lx0alc58ax0c0fh"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; }; - PanViz = derive2 { name="PanViz"; version="1.0.0"; sha256="19av4p7v215yb8scp6v161j1wj9ib98yxw7xkrryn7ad3j361a92"; depends=[colorspace data_table dplyr easycsv futile_logger igraph magrittr RColorBrewer rentrez rlang stringr tibble tidyr]; }; - PanomiR = derive2 { name="PanomiR"; version="1.2.0"; sha256="02kmlv258cvg7zqzb1wh48zxgbhpxqf3avfhlg2w0cf5kwmbxb2w"; depends=[clusterProfiler dplyr forcats GSEABase igraph limma metap org_Hs_eg_db preprocessCore RColorBrewer rlang tibble withr]; }; - Path2PPI = derive2 { name="Path2PPI"; version="1.28.0"; sha256="1psnkgi565gyv7jskpfjcsyvnlgarmqpa1ywzg9z6cfplfly550c"; depends=[igraph]; }; - PathNet = derive2 { name="PathNet"; version="1.38.0"; sha256="02371m21xh684hcrbhfdk9hg1jgcdgrnbn1h6vv7avaz6rc07iki"; depends=[]; }; - PathoStat = derive2 { name="PathoStat"; version="1.24.0"; sha256="17d3csjf8xxl3xq8kqyzkjlcd1xyq1wx5rln45nmancd3qsff9l4"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; - PeacoQC = derive2 { name="PeacoQC"; version="1.8.0"; sha256="06n9clc7bngw1fmbl0n25765svvc1r3n923ai50r9xpc75wygh0a"; depends=[circlize ComplexHeatmap flowCore flowWorkspace ggplot2 gridExtra plyr]; }; - PepsNMR = derive2 { name="PepsNMR"; version="1.16.0"; sha256="02i29jinawssqlb33wvj0h9w6cfcvamlyfxdynd38jmwx23l15l5"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; - PhIPData = derive2 { name="PhIPData"; version="1.6.0"; sha256="1gm1zr532vzz605sah2b2qmp95mnh68lqyp0kjb8l4qjz06vgawd"; depends=[BiocFileCache BiocGenerics cli edgeR GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - PharmacoGx = derive2 { name="PharmacoGx"; version="3.2.0"; sha256="1wd6s9qsfhgc7krkhq26bmdgrcqz8w7nnl580hy0b0lqwnfrd86a"; depends=[Biobase BiocGenerics BiocParallel boot caTools checkmate coop CoreGx data_table downloader ggplot2 jsonlite magicaxis MultiAssayExperiment RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment]; }; - PhenStat = derive2 { name="PhenStat"; version="2.34.0"; sha256="1gjji1l1a39bbmq0dm533f9y10yg455zh8syz4ymp21ipshmh8x9"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; - PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.6.0"; sha256="0y6nay90b50b0cgg532vqk4cfdgvhcw4ianqxh3l4y8gz85136dz"; depends=[doParallel dplyr foreach igraph Matrix]; }; - PhosR = derive2 { name="PhosR"; version="1.8.0"; sha256="1g8ia2f1di5qd7rkgirgpzwmhxx1j2pmid8cqqpb3gmqv39dj5r7"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors SummarizedExperiment tidyr]; }; - PhyloProfile = derive2 { name="PhyloProfile"; version="1.12.6"; sha256="0a1axjplnaf8jqpzdryn4qr6p9gj2vcm20bxnbwcmmiphh37kv5z"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyFiles shinyjs xml2 yaml zoo]; }; - Pi = derive2 { name="Pi"; version="2.10.0"; sha256="09rv07k7sj6l5h00wm5z7hsq1nr084i4xdpy6sgc1kb7hksihcs0"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; }; - Pigengene = derive2 { name="Pigengene"; version="1.24.0"; sha256="0djknlcwhwfswi3wvy9zmi11ldv97zfq2p5rh5xv3ma4zfhrbh9d"; depends=[BiocStyle bnlearn C50 clusterProfiler DBI DOSE dplyr gdata ggplot2 GO_db graph impute MASS matrixStats openxlsx partykit pheatmap preprocessCore ReactomePA Rgraphviz WGCNA]; }; - PloGO2 = derive2 { name="PloGO2"; version="1.10.0"; sha256="0sq2x68bcslzldrh367hh9r1vrnk56mkc6iqiq3zy7rzgxhjigpl"; depends=[GO_db GOstats httr lattice openxlsx xtable]; }; - PoDCall = derive2 { name="PoDCall"; version="1.6.0"; sha256="1x368wc96nn4k17kbbwavriqfp6qywxivdas6sp069c053xkjxrq"; depends=[diptest DT ggplot2 gridExtra LaplacesDemon mclust purrr readr rlist shiny shinyjs]; }; - PoTRA = derive2 { name="PoTRA"; version="1.13.0"; sha256="1a32d1wndb24pxza3h53yddj9z2clff5srny2k00pbbfq1h99mjf"; depends=[BiocGenerics graph graphite igraph org_Hs_eg_db]; }; - PrInCE = derive2 { name="PrInCE"; version="1.14.0"; sha256="07q3x6rx3raz187akwfdd01x57hxbf6njbrydnl9r6a8q0b0gb0b"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase tester tidyr]; }; - Prostar = derive2 { name="Prostar"; version="1.30.7"; sha256="10lzh7gib43f8l2a9p2bnvyf23llzm1931kpna1vpf6p1hswsxzv"; depends=[DAPAR DAPARdata data_table future ggplot2 gplots highcharter htmlwidgets later promises rhandsontable shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes tibble vioplot webshot]; }; - ProtGenerics = derive2 { name="ProtGenerics"; version="1.30.0"; sha256="1k5pg0zbhz9mjsl5i3j33p7qv2adax2lf7yqv6qz229fxxaxs5li"; depends=[]; }; - ProteoDisco = derive2 { name="ProteoDisco"; version="1.4.0"; sha256="0df39hwg5kmc900b57dxw76mz11a7h4nb9kq1z1wl6ampx27w0ks"; depends=[BiocGenerics BiocParallel Biostrings checkmate cleaver dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges ParallelLogger plyr rlang S4Vectors tibble tidyr VariantAnnotation XVector]; }; - ProteoMM = derive2 { name="ProteoMM"; version="1.16.0"; sha256="00hivafxnk9kcji6k4r0ajrdlnlmpmaij6jqiaj9ghfcdqza2fjz"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; - PureCN = derive2 { name="PureCN"; version="2.4.0"; sha256="0x69n8v5fadx3my9s68j9wadicd8q07gmh40drrcd99n8xfrp41b"; depends=[Biobase BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix mclust RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; - Pviz = derive2 { name="Pviz"; version="1.32.0"; sha256="12j3piy8c0d3vd6kqn0i65g96xj8x8p5px4rprw2mw9jnaydavwj"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; - QDNAseq = derive2 { name="QDNAseq"; version="1.34.0"; sha256="1qv3vmc6i7r35pqhi45hmvg8h7v3bl82lv7yifs59k250zsdls59"; depends=[Biobase CGHbase CGHcall DNAcopy future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; - QFeatures = derive2 { name="QFeatures"; version="1.8.0"; sha256="00f2j2kmvap9h7xxayy83g91zm41jd52vi9iyxhfk1lvmzpipa7h"; depends=[AnnotationFilter Biobase BiocGenerics igraph IRanges lazyeval MsCoreUtils MultiAssayExperiment plotly ProtGenerics S4Vectors SummarizedExperiment]; }; - QSutils = derive2 { name="QSutils"; version="1.16.0"; sha256="09zfjc1m8h7v18mccp3krk732ls3z64q21179r0dy4snb0xighln"; depends=[ape BiocGenerics Biostrings psych]; }; - QUBIC = derive2 { name="QUBIC"; version="1.26.0"; sha256="0cq98y7gl1ifx45j0ilwf70h873hwfdv3y4n2yxalk1rqbvwg5dg"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; - Qtlizer = derive2 { name="Qtlizer"; version="1.12.0"; sha256="1mqf7cbm9x0jvz52cmks6kyv8i3ccc80m5pn7z4mrmip782ddjav"; depends=[curl GenomicRanges httr stringi]; }; - QuartPAC = derive2 { name="QuartPAC"; version="1.30.0"; sha256="19r8h639iyc32p2yxz2j89igwl2286jv08hw5a05k4532qdkygj5"; depends=[data_table GraphPAC iPAC SpacePAC]; }; - QuasR = derive2 { name="QuasR"; version="1.38.0"; sha256="1pp94368aj5wx0zcnbbm6zrxrfhixmbcdzpj2lka3blvq5j7sncj"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; }; - QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.32.0"; sha256="1ij17xccnz4m9wvvrwql4ha790qj0x155286rkr9ybwww0ipr20i"; depends=[dplyr Rcpp yaml]; }; - R3CPET = derive2 { name="R3CPET"; version="1.30.0"; sha256="0xhb514qnxswsv58ycsfibi4yxbwfpxn6yp5mv891y7sdb6hkniz"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; - R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.48.0"; sha256="1xx4ssqw5x9y87hmb9h2xkqyvxl41nqfkarwzdlgfd3sqni808s9"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; - R4RNA = derive2 { name="R4RNA"; version="1.26.0"; sha256="13zscbrarxma3p49yfgvpj4rrycra4cnnlcxw8032g4y5v75jzpd"; depends=[Biostrings]; }; - RAREsim = derive2 { name="RAREsim"; version="1.2.0"; sha256="1r4am6k9q922wxxjdq84lbhvxql6padrgh811s73r99lfsxwfxg9"; depends=[nloptr]; }; - RBGL = derive2 { name="RBGL"; version="1.74.0"; sha256="0dccxsynfnhjzjk22hr5kg068zbg33g6kyhlhlhqh78582181j9m"; depends=[BH graph]; }; - RBM = derive2 { name="RBM"; version="1.30.0"; sha256="01842vqv2zl3n5y3xhzr07kclm5rhjv3i0cb315kzssbvrvgsfp2"; depends=[limma marray]; }; - RBioinf = derive2 { name="RBioinf"; version="1.58.0"; sha256="11sfsbbkz482m8jiz21czmhp2ha06ii9h1b6ww8gaka9y0pm8pgc"; depends=[graph]; }; - RCAS = derive2 { name="RCAS"; version="1.24.0"; sha256="0wja7m3b3zr0m8nwcq5m5appsr09jdwkvvvxzh2r5mhksn0abs6p"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors]; }; - RCASPAR = derive2 { name="RCASPAR"; version="1.44.0"; sha256="0v233p8lfgscqsi9d5sszbqhihqd44gs1rnvf8g8nh3090rc8asn"; depends=[]; }; - RCM = derive2 { name="RCM"; version="1.14.0"; sha256="1iaxkj8cm0f7vx2ypicls016kwfkqvarr3xway0n3brvzirmcv9m"; depends=[alabama DBI edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; - RCSL = derive2 { name="RCSL"; version="1.6.0"; sha256="0j2kcdkjpdlqg1ix0v2yq75w7phmhlrzzbaj3zwrljwzdr70wvh1"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; }; - RCX = derive2 { name="RCX"; version="1.2.2"; sha256="05fh6idwiiwqxf3xc5daci68ry6zb5dr1i9xi4v2s1q4srp0qkn0"; depends=[igraph jsonlite plyr]; }; - RCy3 = derive2 { name="RCy3"; version="2.18.0"; sha256="09rikpi8bkh3p7vpwip865vyw9gdr1n28y5azid6ja1wav315s3n"; depends=[base64enc base64url BiocGenerics fs glue gplots graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; }; - RCyjs = derive2 { name="RCyjs"; version="2.20.0"; sha256="0bkjyzphxn62hfmz2hpk9lbxikgv0gp56smss79abi3yx0841dpg"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; - RDRToolbox = derive2 { name="RDRToolbox"; version="1.48.0"; sha256="1i9ma3pi9b425jrgv0pry03id9dc3k0yjr7spfnvbz4xz8ifgllm"; depends=[MASS rgl]; }; - REBET = derive2 { name="REBET"; version="1.16.0"; sha256="18a201k2zdin3k5g5vpwlq8n6z2h6z7849zcz8rf3yzlfmbs2mx1"; depends=[ASSET]; }; - REDseq = derive2 { name="REDseq"; version="1.44.0"; sha256="13r04w1alpjs11kfm6cfqa4rf54z6yhhn8q754jxn8v2ivp7cwgy"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; - REMP = derive2 { name="REMP"; version="1.22.0"; sha256="1rqkvm1s7wb2cbkr8c8dxb8qaydspz83q03xdfgc656jd7431i70"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; - RESOLVE = derive2 { name="RESOLVE"; version="1.0.0"; sha256="1r91nmzw7ll22qxazaagxi0zv8l5kh6rf54alfy9nqx5w10ni78y"; depends=[Biostrings BSgenome BSgenome_Hsapiens_1000genomes_hs37d5 cluster data_table GenomeInfoDb GenomicRanges ggplot2 glmnet gridExtra IRanges lsa NMF nnls reshape2]; }; - RGMQL = derive2 { name="RGMQL"; version="1.18.0"; sha256="1yl0rpah721z0h8r5bsqhrj4nmyqn23sfn3zld59wc9pn8azsqsv"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; - RGSEA = derive2 { name="RGSEA"; version="1.32.0"; sha256="1psrm5qd7kk1h01rb73mf0zi159lpd59awfhslkxaq8b1ifck7ny"; depends=[BiocGenerics]; }; - RGraph2js = derive2 { name="RGraph2js"; version="1.26.0"; sha256="0yvjp8hzbiivmkb2bbwkgznmkgwxr31sr76hjh25cqgfwgj0rrzr"; depends=[digest graph rjson whisker]; }; - RIPAT = derive2 { name="RIPAT"; version="1.8.0"; sha256="0z0g9k09g4g0i2h0lq2f651q0336q6x3rzli6xh7a4pj4gqcbnsw"; depends=[biomaRt GenomicRanges ggplot2 IRanges karyoploteR openxlsx plyr regioneR rtracklayer stringr]; }; - RITAN = derive2 { name="RITAN"; version="1.22.0"; sha256="0ha5qn1l4518ks8bghsb4lmj1ch3ak4gwq8m29xq5wcyg932np7m"; depends=[AnnotationFilter BgeeDB dynamicTreeCut EnsDb_Hsapiens_v86 ensembldb GenomicFeatures ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; - RIVER = derive2 { name="RIVER"; version="1.22.0"; sha256="0ycb97npqrhavm6i8idhdaah3h4i7m73zmqnlki2spg49j6qkh1p"; depends=[Biobase ggplot2 glmnet pROC]; }; - RImmPort = derive2 { name="RImmPort"; version="1.26.0"; sha256="0hwwkdzzh118vw4k3pxxmd7yzxdbjwp5z0vzss1pvmkgidf4sy94"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; - RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.22.0"; sha256="13k01nclhl82kjyh16r5g2xx6f6inp5m7fkkd45pvahalx1cq0lm"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - RLMM = derive2 { name="RLMM"; version="1.60.0"; sha256="1kqxvrjfqf0l98nlj5fx36gh3n5gnxsks0gxpg9b5civjnmaxilv"; depends=[MASS]; }; - RLSeq = derive2 { name="RLSeq"; version="1.4.1"; sha256="12dbvvh7vg9bzyj64jans0p165lz2ca26d9ilg3nka4qii37q23m"; depends=[AnnotationHub aws_s3 callr caretEnsemble circlize ComplexHeatmap dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggplotify ggprism pheatmap RColorBrewer regioneR RLHub rtracklayer valr VennDiagram]; }; - RLassoCox = derive2 { name="RLassoCox"; version="1.6.0"; sha256="0hh84631r6rm5sxpp40v8blrf142rlm4sfyww933yw9khvyxvbnc"; depends=[glmnet igraph Matrix survival]; }; - RMassBank = derive2 { name="RMassBank"; version="3.8.0"; sha256="1zlv2vyarj0przwdn39iybk9fkghqbiic5y24i603jzajv9hqxz0"; depends=[assertthat Biobase ChemmineOB ChemmineR data_table digest enviPat httr logger MSnbase mzR R_utils rcdk Rcpp RCurl readJDX rjson S4Vectors webchem XML yaml]; }; - RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.10.0"; sha256="0zj6ham16bjycdh1qids0pfq6xdbp8y1hdjm966ba6cwl9xxwl5d"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; }; - RNASeqPower = derive2 { name="RNASeqPower"; version="1.38.0"; sha256="1f8jiljxacqjj0vf2v01fclhl3i0w7xddxcs6ajxzlmmpqs19b8a"; depends=[]; }; - RNASeqR = derive2 { name="RNASeqR"; version="1.16.0"; sha256="0m7d3mm644n81630v2m6vv7798x3rjshb9jcp63xq631j1wmk63i"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; }; - RNAdecay = derive2 { name="RNAdecay"; version="1.18.0"; sha256="1zf5gg25lyn4z8yq8mmysxzpm7jkpspawyv7siwzb0m80h59rpiy"; depends=[ggplot2 gplots nloptr scales TMB]; }; - RNAinteract = derive2 { name="RNAinteract"; version="1.46.0"; sha256="18yhkkwq4gvwvph8pz53cl7id644vv1n2d3jngwrfk918jay5d0s"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; - RNAmodR = derive2 { name="RNAmodR"; version="1.12.0"; sha256="0xhz2fz0lw2yw14cw8fcnghk9y9q0v75b4bkf7bg5v0jrcgg6bc4"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors]; }; - RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.12.0"; sha256="1ckd5n79psinpvw45ysnkw8n3r8g0njbd9f1a555dwl29vb7ay83"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; - RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.12.0"; sha256="08nkscr9164gpdyp3g3ypm7l7gn5lj034nj7hwmgjp4qihsnfliy"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; }; - RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.12.0"; sha256="14zkhq86sz7sj9nacfcsqb9g5w3nx9318aaqfqhkckk17nvrzhcg"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; - RNAsense = derive2 { name="RNAsense"; version="1.12.0"; sha256="130hbqhsvqm0sb39051b7s2asmvxv3pij0a5d03g7v828cbc96fh"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; }; - ROC = derive2 { name="ROC"; version="1.74.0"; sha256="00pw6xmxjzprbx8wskq6gbyqkfak764vic5yxrzs6wpram352vmv"; depends=[knitr]; }; - ROCpAI = derive2 { name="ROCpAI"; version="1.10.0"; sha256="0inil870ingad37gv6bc0hakizwb7lpg8s9disz888314f3xqmwz"; depends=[boot fission knitr SummarizedExperiment]; }; - ROSeq = derive2 { name="ROSeq"; version="1.10.0"; sha256="09jx7m25y7c0ihsv9a6cj002395kg3whrvzphgwbcipwdly1ag8f"; depends=[edgeR limma pbmcapply]; }; - ROTS = derive2 { name="ROTS"; version="1.26.0"; sha256="1wirblji4ckiwrvnh14cfwc9cjypazbaqr00ka5ndyz39cc31shn"; depends=[Biobase Rcpp]; }; - ROntoTools = derive2 { name="ROntoTools"; version="2.26.0"; sha256="0x0icx2r3vdn2a3615hfaqgp95p0d4cwz64231hqg1xji63b0q0s"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; - RPA = derive2 { name="RPA"; version="1.54.0"; sha256="1981822904nc6slkqs8mhcm82ys3s8l0yjcbg0n7ki7pibfyd87g"; depends=[affy BiocGenerics BiocStyle phyloseq rmarkdown]; }; - RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.10.0"; sha256="07d5skr8cp0hyjbs7whw4h8scrf2w4hyn0wzj3khqdss53zmmr2m"; depends=[]; }; - RRHO = derive2 { name="RRHO"; version="1.38.0"; sha256="1fng44mhqxjq4xczw7hj32v09l1dl58azfd8cgc9jg1j2d5whjs6"; depends=[VennDiagram]; }; - RSVSim = derive2 { name="RSVSim"; version="1.38.0"; sha256="1zby1b7zic28x32m7w39lnp4cc1ksip08k5xq30wa7radlafagfn"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; - RSeqAn = derive2 { name="RSeqAn"; version="1.18.0"; sha256="0fjcwm3fw13yv3vdawwdbmbqws3n47f5s10rcvllm3wrbb1zrwb6"; depends=[Rcpp]; }; - RTCA = derive2 { name="RTCA"; version="1.50.0"; sha256="1jd5rknlbhdi650xg1isqxmgvi797c4jimn53x4nzaq88b8rabsc"; depends=[Biobase gtools RColorBrewer]; }; - RTCGA = derive2 { name="RTCGA"; version="1.28.0"; sha256="1h7x1hb7lnjaq842k72l76j7l4d9130vfh8flvsjvzyc3l98cywq"; depends=[assertthat data_table dplyr ggplot2 ggthemes htmltools knitr purrr RCurl rmarkdown rvest scales stringi survival survminer viridis XML xml2]; }; - RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.28.4"; sha256="14pw75cy4y5s6y2szdy8hwf8q1cysxiln6z45yn5lgdha96c6zdp"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr limma RaggedExperiment RCircos RCurl RJSONIO rvest S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; }; - RTN = derive2 { name="RTN"; version="2.22.1"; sha256="0ga96f1qmbq5a8nxb94b60ml2fwynnz590xjbzcx1g5vhrblkj42"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; }; - RTNduals = derive2 { name="RTNduals"; version="1.22.0"; sha256="0m3h0rkix48pr4jywvm0h1pbqlv62gdzq3safwgqpgb7m0pg6d08"; depends=[RTN]; }; - RTNsurvival = derive2 { name="RTNsurvival"; version="1.22.0"; sha256="00naywzamklldsvipyg3q2c16s84y8cw1bngdw2l1d8yra4qpq9r"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; }; - RTopper = derive2 { name="RTopper"; version="1.44.1"; sha256="0g31606wsd8z2rpriad2fk9v8n27vp6gyk02nmq46s9c0jpf3s7p"; depends=[Biobase limma multtest]; }; - RUVSeq = derive2 { name="RUVSeq"; version="1.32.0"; sha256="1qb4k7pm8w86d2p9q2r4n63iyi34wdib5x9rsjx4vhcxrnzyyygm"; depends=[Biobase EDASeq edgeR MASS]; }; - RUVcorr = derive2 { name="RUVcorr"; version="1.30.0"; sha256="1g4krs3d7sr56chapaxxkr4bxyays8lv6kkdds8b3q89acwzq66l"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; - RUVnormalize = derive2 { name="RUVnormalize"; version="1.32.0"; sha256="0cn38bdc72qw5g9qwwpaql72684501nrk562xpvymw5nkgw28v6i"; depends=[Biobase RUVnormalizeData]; }; - RVS = derive2 { name="RVS"; version="1.20.0"; sha256="0cm8j9j1s77lklgadgbb1i774l2b2s62dsjg8y1i1w4mnb9a1sn9"; depends=[GENLIB gRain kinship2 snpStats]; }; - RadioGx = derive2 { name="RadioGx"; version="2.2.0"; sha256="1n11dkbqrlxgv6asl0qdd9d4xwbbciyh6ag5dhgkzv7fyp1kxd12"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader magicaxis matrixStats RColorBrewer reshape2 S4Vectors scales SummarizedExperiment]; }; - RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.22.0"; sha256="0gclfng9rhw32r3z22nc3bna87z45jq83y5czd3865g6lwvpp04l"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors SummarizedExperiment]; }; - RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.18.0"; sha256="0s13jgk4si3a2bnqavk2n420kh3iggap7kbrjfawadnjdj2ic34c"; depends=[dnet igraph Matrix]; }; - RankProd = derive2 { name="RankProd"; version="3.24.0"; sha256="1dyjm4wwjq8aqx7sbr4jqxjw1d55w2jzdl6f8cxslc63q2sjnpa3"; depends=[gmp Rmpfr]; }; - RareVariantVis = derive2 { name="RareVariantVis"; version="2.26.0"; sha256="1bkww57sv3jim07cawhfkm856p3ylyv0a89k7mr3lrnxfgxgnll9"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - RbcBook1 = derive2 { name="RbcBook1"; version="1.66.0"; sha256="06ddf30kpdmv7zs4n4q0jnnk0fsp0vb5263haw9bky45v56v4ghl"; depends=[Biobase graph rpart]; }; - Rbec = derive2 { name="Rbec"; version="1.6.0"; sha256="1n6cl79lvd4h249mvm6bzgcdgdpnw2683imlqxi74wd5aviw5shw"; depends=[dada2 doParallel foreach ggplot2 Rcpp readr]; }; - Rbowtie = derive2 { name="Rbowtie"; version="1.38.0"; sha256="1kbpqhidj2bwhp9gxqx2qjaby6fc2dfrnnyjkciswgxckis6h2pc"; depends=[]; }; - Rbowtie2 = derive2 { name="Rbowtie2"; version="2.4.2"; sha256="0cbm6q4v9ddyx4gnw2p47ssyhnmjfxahvzbzwjzn0my3ixssy0aj"; depends=[magrittr Rsamtools]; }; - Rbwa = derive2 { name="Rbwa"; version="1.2.0"; sha256="0s6a4miawnsicysq9g8k0c5aycrq5bnx8pq07hsd86pbbmw57nhx"; depends=[]; }; - Rcade = derive2 { name="Rcade"; version="1.39.1"; sha256="05cli4h96xcsf6xas9z5ma8bzh10grlwkfgmz4a115ykblwyaj4r"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; - RcisTarget = derive2 { name="RcisTarget"; version="1.18.2"; sha256="02lz2m2zhwy1dvmjvlss6qg0dh574qhnvn7al3wx7ck1hkz0dgi2"; depends=[arrow AUCell BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges GSEABase R_utils S4Vectors SummarizedExperiment tibble]; }; - Rcpi = derive2 { name="Rcpi"; version="1.34.0"; sha256="0y64c3z7g8vsziphq39wypcncd3alvakd3ndwv7fgijpxf1rq4hf"; depends=[Biostrings doParallel foreach GOSemSim rcdk RCurl rjson]; }; - Rcwl = derive2 { name="Rcwl"; version="1.14.0"; sha256="17g2k748n4p7v7xvw5lrl5sw31w363hiqj8iaq6mclil7pyi90d7"; depends=[basilisk batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; }; - RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.14.0"; sha256="0b5v4x4v0ygkbfc8f8310bw2q8zsmqf9f8f2rynqmd5r7r5c8518"; depends=[BiocFileCache git2r httr rappdirs Rcwl S4Vectors]; }; - Rdisop = derive2 { name="Rdisop"; version="1.58.0"; sha256="0109isvqjf18y5nryw98kvc4m5jq63jvlxlvdm7sqqikcq6irraj"; depends=[Rcpp]; }; - ReQON = derive2 { name="ReQON"; version="1.44.0"; sha256="1r4dzwnqv6a4zy5q9l3axqq23sbk9pjfb2y3fmwxjvdwq6c1qnp0"; depends=[rJava Rsamtools seqbias]; }; - ReactomeContentService4R = derive2 { name="ReactomeContentService4R"; version="1.6.0"; sha256="0dwzamd82n598bj80cjp49mzjdfwrf4ajkb42fcp67j1w6zh6g73"; depends=[data_table doParallel foreach httr jsonlite magick]; }; - ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.12.0"; sha256="09sd33dji4bz6ym9hf1gpiamqm0cz45120p2k9rq70pwvra1ipcn"; depends=[dplyr ggplot2 gplots httr jsonlite progress RColorBrewer tidyr]; }; - ReactomeGraph4R = derive2 { name="ReactomeGraph4R"; version="1.6.0"; sha256="0by0k2gj48y3ng0ckn46g2nfxn4jkh6qdd49w07bqvx8bmap1k3m"; depends=[data_table doParallel foreach getPass jsonlite magrittr neo4r purrr ReactomeContentService4R rlang]; }; - ReactomePA = derive2 { name="ReactomePA"; version="1.42.0"; sha256="06994hk9nrzlgz8sby61656rdbf1r954v71djl1i7141dgw5rif2"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite gson igraph reactome_db]; }; - ReadqPCR = derive2 { name="ReadqPCR"; version="1.44.0"; sha256="1ss2mz31v2hps9hs34iz6cswynizw2qy64jzy72fgk4zi7a37wkv"; depends=[Biobase]; }; - RedeR = derive2 { name="RedeR"; version="2.2.1"; sha256="16daz3m82r7sawpzv387jxi4xyam9h5dfrklzp4n52qb5v67n8aq"; depends=[igraph]; }; - RedisParam = derive2 { name="RedisParam"; version="1.0.0"; sha256="0jlkgkgfi7y5mmsqphp18qg1vnmrryq6xl6hdmafnh1skpn01mzn"; depends=[BiocParallel futile_logger redux withr]; }; - RefPlus = derive2 { name="RefPlus"; version="1.68.0"; sha256="1gi3z78g5z85sawqc4g056m8wgnbddyc0x9pdr0kjxr80kmm8jm3"; depends=[affy affyPLM Biobase preprocessCore]; }; - RegEnrich = derive2 { name="RegEnrich"; version="1.8.0"; sha256="0pjscj7zsd7kcmv23pndwasy4nf80ji8ynprl1xv1gxy0wbazxd4"; depends=[BiocParallel BiocSet DESeq2 DOSE dplyr fgsea ggplot2 limma magrittr randomForest reshape2 S4Vectors SummarizedExperiment tibble WGCNA]; }; - RepViz = derive2 { name="RepViz"; version="1.14.0"; sha256="0pbnca9srv6r5h5bin80xx95b9vx25y2kgfznydl6h6dp8vrxjdm"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; }; - Repitools = derive2 { name="Repitools"; version="1.44.0"; sha256="148m0pnp40bc8hnq72gxivyhylnzjwh5bwpsv6yvjjc5d9b4h003"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; - ReportingTools = derive2 { name="ReportingTools"; version="2.38.0"; sha256="1nrgnb002qv0yzmrvg59i9b5wzxda0fdkrmdi6vr15g0g7j3yry0"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; - ResidualMatrix = derive2 { name="ResidualMatrix"; version="1.8.0"; sha256="0zqifr1zhsfhrkjlp0ajqiqc9f96yz8zr13yhl19lvw30pwg9rj9"; depends=[DelayedArray Matrix S4Vectors]; }; - Rfastp = derive2 { name="Rfastp"; version="1.8.0"; sha256="0vc03bch0j2zv468sb7prnc4ppxj45c21sgzkxx22gx019889qf2"; depends=[ggplot2 Rcpp reshape2 Rhtslib rjson zlibbioc]; }; - RgnTX = derive2 { name="RgnTX"; version="1.0.0"; sha256="1a70hwc1268qf0z2wyan1zgkgjc1z4fgbb8xlrbmv8nq0hblxfs7"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges regioneR S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - Rgraphviz = derive2 { name="Rgraphviz"; version="2.42.0"; sha256="0blymdax10zzg2lpj4hgvyh9c01b1qaivrc0gx95swji37zkqnwm"; depends=[graph]; }; - Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.20.0"; sha256="0zxgpc2krfwqzm8c05cdlfs3dyyf5ll43ff9mw8xzj89wcmlcfx7"; depends=[]; }; - Rhisat2 = derive2 { name="Rhisat2"; version="1.14.0"; sha256="19dc9fadgl55icqc5xv834kigicxxr6cny83247jjbgf5zp16piv"; depends=[GenomicFeatures GenomicRanges SGSeq]; }; - Rhtslib = derive2 { name="Rhtslib"; version="2.0.0"; sha256="1ri76wwv44hgxji2bmlqi6v8gbvhr72q0d6nlgpfgfwb9sgvz62h"; depends=[zlibbioc]; }; - RiboCrypt = derive2 { name="RiboCrypt"; version="1.4.0"; sha256="0656cgcb5k2ky3850pf7il61dr5nb3i2cdk93x3xllcacp64h4mm"; depends=[BiocGenerics BiocParallel Biostrings data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges ORFik plotly rlang]; }; - RiboDiPA = derive2 { name="RiboDiPA"; version="1.6.0"; sha256="16i271hdibwv29883wxrzjhcilri4ydnyq5znl0dcqj2fbfr3y46"; depends=[BiocFileCache BiocGenerics data_table DESeq2 doParallel elitism foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges matrixStats qvalue Rcpp reldist Rsamtools S4Vectors]; }; - RiboProfiling = derive2 { name="RiboProfiling"; version="1.28.0"; sha256="0wmmpcabi1ngwmvfhxkp44kj1wvzyrcckkrzpjlzcq016lr67iwn"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; - Ringo = derive2 { name="Ringo"; version="1.62.0"; sha256="0l9lpf6a2cj88hm75f8qy7h13lvwc1ldykvqkd0zxzdwx1s64gzr"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; - Risa = derive2 { name="Risa"; version="1.40.0"; sha256="1id6xgm74zj1h1kig2apg119ms8n6z9pnjfwyxlbkdzyyn040rl0"; depends=[affy Biobase biocViews Rcpp xcms]; }; - Rmagpie = derive2 { name="Rmagpie"; version="1.54.0"; sha256="00ys66bbj8c61dr23zj1r0gn5lkmih15b2cbcvxxllzyy9smcdpa"; depends=[Biobase e1071 kernlab pamr]; }; - Rmmquant = derive2 { name="Rmmquant"; version="1.16.0"; sha256="0x8s2whkg9x3r1hk973zwkaby2d616cvfzkg3qp77nqn0sip91r8"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - RnBeads = derive2 { name="RnBeads"; version="2.16.0"; sha256="1cjzdwfjcb4wqwm5kwzyvf7f6c3glxjvhi4w9f26n1g9ifli9725"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; - RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.8.0"; sha256="0v120ckw1b4j3fm80amm7qihrrczh3s291n2snrpai34xhpfbrva"; depends=[biomaRt dplyr edgeR ggplot2 ggpubr heatmap3 KEGGREST matlab Rcpp recount RnaSeqSampleSizeData SummarizedExperiment tidyr tidyselect]; }; - RolDE = derive2 { name="RolDE"; version="1.2.0"; sha256="0agxqynb58ky0z0dzhz3j7c2n1yz4njwk651jjikb9z3c4k67kiv"; depends=[doParallel doRNG foreach matrixStats nlme qvalue rngtools ROTS SummarizedExperiment]; }; - Rqc = derive2 { name="Rqc"; version="1.32.0"; sha256="02k64pjd1dlz5sksdbkbii9z4ihf1833ws7wwj81w3757zzabx0x"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; - Rsamtools = derive2 { name="Rsamtools"; version="2.14.0"; sha256="0wd4hsn19msz0fkwfq7gvi97vlfpsbzzw3rjj4b6z7s5a83zir2z"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; - Rsubread = derive2 { name="Rsubread"; version="2.12.3"; sha256="0lhmva8yghlbb44h1fvbcqfp8zvdn4pd4nwyd2drh6b271f8qjdd"; depends=[Matrix]; }; - Rtpca = derive2 { name="Rtpca"; version="1.8.0"; sha256="0n2k1pqba4fnf0mpkxywd93yzv9dk37c134pna3f25mgzgd84qj3"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; - Rtreemix = derive2 { name="Rtreemix"; version="1.60.0"; sha256="0pkc4xsqqfdvszbb0xwx3hbxl1f7kcx3vm9bhjd7zkwls1jvv2n8"; depends=[Biobase graph Hmisc]; }; - S4Vectors = derive2 { name="S4Vectors"; version="0.36.2"; sha256="131cg5fzrqgyp4kv260yn8hpr0zv5mxjhdnpl50ydgc2k0l43d38"; depends=[BiocGenerics]; }; - SAIGEgds = derive2 { name="SAIGEgds"; version="1.12.5"; sha256="10cck00fc4wmj7iwzm0s5ddgm32rpw8f32fawqaigxxrb3r9yn20"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; }; - SANTA = derive2 { name="SANTA"; version="2.34.0"; sha256="1i99s33id75srjr0x3yfz1gdyxw6766pr9w4afs8varfq8gxyc48"; depends=[igraph Matrix]; }; - SBGNview = derive2 { name="SBGNview"; version="1.12.0"; sha256="0644hd9m4d1s9y000yh831pwyx7q1dzr69fjqf15bby78xkn70yn"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; - SBMLR = derive2 { name="SBMLR"; version="1.94.0"; sha256="1x7p27abv9yc9mxbnprlwh5ph50jkycmlb90qib0mj361g4sr72d"; depends=[deSolve XML]; }; - SC3 = derive2 { name="SC3"; version="1.26.2"; sha256="0ds45m55qmq6d837ifpwmxvzij73xgkzhw1m63yv2s33rk1m6gka"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; - SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.40.0"; sha256="1hrfwkn1gd1r2clk09a2i4sqc92bmw1c7h5ddrdnlcpgfdlsdnxp"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; - SCANVIS = derive2 { name="SCANVIS"; version="1.12.0"; sha256="0hs065lsfwjdz8b6kic1gjpak8xd5p08k957f9zsz32shp0gp976"; depends=[IRanges plotrix RCurl rtracklayer]; }; - SCATE = derive2 { name="SCATE"; version="1.8.0"; sha256="1zxliw0q979jps5lrmwks5m39qjd827jbvax1ndkd8p6lp1pcm2h"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; }; - SCArray = derive2 { name="SCArray"; version="1.6.0"; sha256="0crh2ddh87j5qbxnslr1f94nsf24rzqz61ng6v3g8zpsldkrw09b"; depends=[BiocGenerics DelayedArray DelayedMatrixStats gdsfmt IRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SCBN = derive2 { name="SCBN"; version="1.16.0"; sha256="1lan5anf451dmb19sra79d4w2qi9kk7xw3zijswlbhfnd4fv9kgz"; depends=[]; }; - SCFA = derive2 { name="SCFA"; version="1.8.1"; sha256="1839mh15wxn07nh2zx7ahs2nimgxczpvn11dcr113zimxibm1r5z"; depends=[BiocParallel cluster coro glmnet igraph Matrix matrixStats psych RhpcBLASctl survival torch]; }; - SCOPE = derive2 { name="SCOPE"; version="1.10.0"; sha256="1z9v27l8bs7gkbgp1kd1q9nyq77x46anc0x0c1as0m04qq7c5xbj"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; }; - SCnorm = derive2 { name="SCnorm"; version="1.20.0"; sha256="0zv4pf650crwliby34cjv7kxkrbqhc7xvz15n39hz5d0fk7ablgd"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SDAMS = derive2 { name="SDAMS"; version="1.18.0"; sha256="0i9i9w24qb66rbvkpjn2fin8x0mxd7g767i4ly0s75v9kbbp3ca6"; depends=[qvalue SummarizedExperiment trust]; }; - SELEX = derive2 { name="SELEX"; version="1.30.0"; sha256="0b5dcx9djh9d0zi12bnzq81jjzcqam1i59a05d3p917gf0n058ms"; depends=[Biostrings rJava]; }; - SEPIRA = derive2 { name="SEPIRA"; version="1.18.0"; sha256="1vm4zy6a0hff6j6ysbnrxa51irc4mh98rxs2f253f50rwsbasxlv"; depends=[corpcor limma]; }; - SEtools = derive2 { name="SEtools"; version="1.12.0"; sha256="0q47pw3yvk13ld9zwpc6lihf9y4z2dq81y81zyz5b8mxnlkhwixa"; depends=[BiocParallel circlize data_table DESeq2 edgeR Matrix openxlsx pheatmap S4Vectors sechm SummarizedExperiment sva]; }; - SGSeq = derive2 { name="SGSeq"; version="1.32.0"; sha256="03ddz0mpgqqb52r7wa46bcr1ybf40126pg0n0n0pv6fnbq0ifwyc"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; - SIAMCAT = derive2 { name="SIAMCAT"; version="2.2.0"; sha256="1fx355rwaqg057f6qyynmnhqvf74c818irfaii6y3s46g455nvwk"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo lgr LiblineaR lmerTest matrixStats mlr3 mlr3learners mlr3tuning paradox phyloseq pROC progress PRROC RColorBrewer scales stringr]; }; - SICtools = derive2 { name="SICtools"; version="1.28.0"; sha256="1zjwph09shvjzzhsnh8mfzqypj2s66r6irq1bms2zw1mqpjcb2fx"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; - SIM = derive2 { name="SIM"; version="1.68.0"; sha256="0vrz9cmzjy20h02gsi79svrh9ffrxkkzbnfa0azcgycz6h5ywggs"; depends=[globaltest quantreg quantsmooth]; }; - SIMAT = derive2 { name="SIMAT"; version="1.30.0"; sha256="1zwmwblzr9r66a5d9xrjb43id9fl5m4fbzgn04yx9bmvxywa4xfw"; depends=[ggplot2 mzR Rcpp reshape2]; }; - SIMD = derive2 { name="SIMD"; version="1.16.0"; sha256="18wwn76kd826jgqqdrdmsjq5m6mfn3kp3w2h2p5qwb4w5zqdw2ir"; depends=[edgeR methylMnM statmod]; }; - SIMLR = derive2 { name="SIMLR"; version="1.24.3"; sha256="1z49a3asx00lmxhd4rnr2bwcc1wmx6l06rx54gk70cc5f5r3m3ix"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; - SISPA = derive2 { name="SISPA"; version="1.28.0"; sha256="08ks8nlc200yz8r3qr45g03k4bpi4dfvdd7sin1yadazfil1s6kr"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; - SLqPCR = derive2 { name="SLqPCR"; version="1.64.0"; sha256="0s3gs5q5h4vrjaqwdr6gjfsl1pj286sim2cx9abvjj9hpcjk08vx"; depends=[]; }; - SMAD = derive2 { name="SMAD"; version="1.14.1"; sha256="1scmpagh86s9f8qsa89vi8l221asbygpv4mkg7bsv5943aqbknpm"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; - SMAP = derive2 { name="SMAP"; version="1.62.0"; sha256="152lrwn5rr9vlkgj22sgzg0winnhzvvlg6nvzd717bjngjjfj8nq"; depends=[]; }; - SMITE = derive2 { name="SMITE"; version="1.26.0"; sha256="0jkxchbwjjid2r8z1dipjp6rzmj0qs9afrvd4jamvx1gg9xwr6b3"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; - SNAGEE = derive2 { name="SNAGEE"; version="1.38.0"; sha256="1hbcibv4yhk7hw4w41nq85szk41vrfyfv7cv4qzn0xhv3cacivj1"; depends=[SNAGEEdata]; }; - SNPRelate = derive2 { name="SNPRelate"; version="1.32.2"; sha256="1ib0va8n19ygi52qgx2fgdswqdgpfgcd89wcp4rsq10w87nxvalx"; depends=[gdsfmt]; }; - SNPediaR = derive2 { name="SNPediaR"; version="1.24.0"; sha256="1afz3d8vbldd5q38nsqwblap4rgxhjqq6yixh5vgk0qbcmhhhb8g"; depends=[jsonlite RCurl]; }; - SNPhood = derive2 { name="SNPhood"; version="1.28.0"; sha256="0kn0ini79lp2c3mav1hf54jg3lw2ggdbi03nrxxp9iinzs83q9d2"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - SOMNiBUS = derive2 { name="SOMNiBUS"; version="1.6.0"; sha256="04lkkhq3im7cyi0ibm8i53092hjlwaz0v32chp487pwdpz87c650"; depends=[Matrix mgcv VGAM]; }; - SPEM = derive2 { name="SPEM"; version="1.38.0"; sha256="1763qcs36vsvbd7rv3s40lgq6yq7b2dcjadgcqmh081hc4zz63cb"; depends=[Biobase Rsolnp]; }; - SPIA = derive2 { name="SPIA"; version="2.50.0"; sha256="1zrjjlji7whpvgpznslswxs6nj29n40x02z0v62j1x7r0y4rkn7b"; depends=[KEGGgraph]; }; - SPIAT = derive2 { name="SPIAT"; version="1.0.4"; sha256="0naxd1s30cbv1lc65agl8lqrzdp5yhwjbh038wd47z6yrxxn4ds5"; depends=[alphahull apcluster ComplexHeatmap dbscan dittoSeq dplyr elsa ggplot2 gridExtra gtools mmand plotly pracma RANN raster reshape2 rlang Rtsne sp SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tibble umap vroom]; }; - SPLINTER = derive2 { name="SPLINTER"; version="1.24.0"; sha256="01rq0x3v5byqwj0mlxv207hkf2zhadyq28qnr49mx25xanb714ah"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; - SPONGE = derive2 { name="SPONGE"; version="1.20.0"; sha256="0wlm7xbnz50avlyx0gpxqbwsascwg777sc39h01a3qxbfz91ia4w"; depends=[Biobase biomaRt caret ComplexHeatmap cvms data_table doRNG dplyr expm foreach ggplot2 ggpubr ggridges glmnet gRbase igraph iterators logging MASS MetBrewer miRBaseConverter ppcor randomForest rlang stringr tidyr tidyverse tnet]; }; - SPOTlight = derive2 { name="SPOTlight"; version="1.2.0"; sha256="03zvbhr1k4zwnzkza99295fp7j1pihjfz8gs1v0kgksj340nwfvf"; depends=[ggplot2 Matrix matrixStats NMF nnls SingleCellExperiment]; }; - SPsimSeq = derive2 { name="SPsimSeq"; version="1.8.0"; sha256="1rhvxqldzv7if8r8x7xnszb68r6qcbysazddbbil0drvi1dxsl0z"; depends=[edgeR fitdistrplus Hmisc limma mvtnorm phyloseq SingleCellExperiment WGCNA]; }; - SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.12.0"; sha256="06sppcwx5xm1z2dyqfxl9ml3wpyblvcvy0jsc4dqyw5d8np87m5d"; depends=[BiocGenerics DBI dbplyr dplyr lazyeval RSQLite S4Vectors tibble]; }; - SQUADD = derive2 { name="SQUADD"; version="1.48.0"; sha256="174gbzjjvyz0m4ldr0blg82xd7r3av7frzw199ignhflyxy6brsx"; depends=[RColorBrewer]; }; - SRAdb = derive2 { name="SRAdb"; version="1.60.0"; sha256="1j88gk2dr2anh61acvdyqf2gvy3d1dzdssfj1fwpwppy2p0gy0xr"; depends=[GEOquery graph RCurl RSQLite]; }; - STAN = derive2 { name="STAN"; version="2.26.2"; sha256="0dd4hb2iabvnr6v0ys4jslj7611z1hii8hxkdvwrjbz4nn678wkv"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; - STATegRa = derive2 { name="STATegRa"; version="1.34.0"; sha256="1l9xzkd1hwiah7bwm23clwc62gs1jks9hgkympwyr5in33fy6z61"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; - STRINGdb = derive2 { name="STRINGdb"; version="2.10.1"; sha256="0qpss8fcf8ll47jv45ypsqd9jf7ajdiya7w4mw1wysk76spcwllm"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; - STROMA4 = derive2 { name="STROMA4"; version="1.22.0"; sha256="0cyyjly4wpzjyf130shcpy9q734l32wk3a3c2wymbvxxlphk9353"; depends=[Biobase BiocParallel cluster matrixStats]; }; - STdeconvolve = derive2 { name="STdeconvolve"; version="1.2.0"; sha256="1f5b3vnswpj6sja05g9lnx3lygzkh162kynja0xfjd0rksp4n0h5"; depends=[BiocParallel clue ggplot2 liger Matrix mgcv reshape2 scatterpie slam topicmodels viridis]; }; - SUITOR = derive2 { name="SUITOR"; version="1.0.0"; sha256="0ms36d1ay3w1ynrj6672yhvdv0fsvrlwx6fqrp56f5ibvmh3nchd"; depends=[BiocParallel ggplot2]; }; - SWATH2stats = derive2 { name="SWATH2stats"; version="1.28.0"; sha256="1mab1q9xv0pzm97lpsnvn3hhybqrmy29gcdcdxd4myf6zqg1j0a3"; depends=[biomaRt data_table ggplot2 reshape2]; }; - SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.52.0"; sha256="1sphi1y61abx428624nrk8srlcp405ssqzzxwrpjrd325gj5ry5q"; depends=[]; }; - Scale4C = derive2 { name="Scale4C"; version="1.20.0"; sha256="1fqzfq782xb378p3f8cyd2pd81iwpw5vf9ssq9349vwz1qzycm8a"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; - ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.6.0"; sha256="0lxr6z9zdrgvm06inc1d8gl2agqmbjvgs8f5ryn5x68hqlnchnl1"; depends=[DelayedArray Matrix S4Vectors]; }; - Sconify = derive2 { name="Sconify"; version="1.18.0"; sha256="09jhbvqrwkwp0lg8ixxja9hg88virvpj7bglcmws4z6ch98g42cy"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; - ScreenR = derive2 { name="ScreenR"; version="1.0.0"; sha256="1907v37z3lrqmlghx4kja5pfii1hbifdxka32yqqrnb5zzw4lgxz"; depends=[dplyr edgeR ggplot2 ggvenn limma magrittr patchwork purrr rlang scales stringr tibble tidyr tidyselect]; }; - SemDist = derive2 { name="SemDist"; version="1.32.0"; sha256="1w8jbzz5b9ggc696hbj7vy4n6j2h047raw3x9k6y3vf7b4g83nl6"; depends=[annotate AnnotationDbi GO_db]; }; - SeqArray = derive2 { name="SeqArray"; version="1.38.0"; sha256="12q4n2whcnp011xqlb6hfagk5d6yl24w5i68iz3j7m9cbcxwv6cn"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SeqGSEA = derive2 { name="SeqGSEA"; version="1.38.0"; sha256="1d88glq8k5bv76s3iq39s5vzzzpcg61r5rfbgw7kdcawing485fq"; depends=[Biobase biomaRt DESeq2 doParallel]; }; - SeqGate = derive2 { name="SeqGate"; version="1.8.0"; sha256="0j515d63xmy1p7d7f8cbg0dz5d61vznsfdw8id8cr32jz7ciz1y4"; depends=[BiocManager GenomicRanges S4Vectors SummarizedExperiment]; }; - SeqSQC = derive2 { name="SeqSQC"; version="1.20.0"; sha256="12czsf0nphqqrwh5iyragjmms4srjklqdzv3232p39vm5zy5p6c0"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; - SeqVarTools = derive2 { name="SeqVarTools"; version="1.36.0"; sha256="0cy85fzrbd646yc774y0v8qiccjhx7f6ysk399zgdfrkq6r458yd"; depends=[Biobase BiocGenerics data_table gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray]; }; - SharedObject = derive2 { name="SharedObject"; version="1.12.0"; sha256="11rrnm7kjm6z8j4ga88s4cafcdj83pvhnybp7ns5pn7s2ln8044d"; depends=[BH BiocGenerics Rcpp]; }; - ShortRead = derive2 { name="ShortRead"; version="1.56.1"; sha256="1dvnjjc6cwn9wicki3ff3w3zx7i0szj0lnfw4n6lbmipg4ia5bkb"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rhtslib Rsamtools S4Vectors XVector zlibbioc]; }; - SigCheck = derive2 { name="SigCheck"; version="2.30.0"; sha256="0j8m04csgyz3ph6xp1qd5fzsqh83717366f136vgqr6y4msv6jyj"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; - SigFuge = derive2 { name="SigFuge"; version="1.36.0"; sha256="1bqj490afai01bkkxkc3pph2vix0hjvkixrndks57bwh94r9k876"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; - SigsPack = derive2 { name="SigsPack"; version="1.12.0"; sha256="0bwhpaj1wr67nhljslpvr25yz1y1zxnha2w58g8bmbxxfp8353zc"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; }; - SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.36.0"; sha256="12383rvcq7l2b3ik2gi741d33shrijj09gqpkbvbksj046j90swm"; depends=[Biobase limma mclust Ringo]; }; - SimBu = derive2 { name="SimBu"; version="1.0.2"; sha256="0w8aksmcs16d6zmczarni8vrkw5b5kmv7n495w0qhmy6ync197bx"; depends=[basilisk BiocParallel data_table dplyr ggplot2 Matrix phyloseq proxyC RColorBrewer RCurl reticulate sparseMatrixStats SummarizedExperiment tidyr]; }; - SimFFPE = derive2 { name="SimFFPE"; version="1.10.0"; sha256="1mlmlbnqqzxmjmir9lnqnqqb6hmj6wfxhy6wpmf6sv9y2vi2cvjz"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; }; - SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.20.1"; sha256="1xwa6ncmqp21a4zx1dbs9p9b9rqbxhdgq2279mj4yl0gnpyqr9d7"; depends=[BiocGenerics DelayedArray GenomicRanges S4Vectors SummarizedExperiment]; }; - SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.10.0"; sha256="194gnss397wv3pxh1vf8gfikbz519l8hx3w4fm2hxvjs6q8k2234"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran SIMLR stringr]; }; - SingleMoleculeFootprinting = derive2 { name="SingleMoleculeFootprinting"; version="1.6.0"; sha256="0dqyx3w8mxhf04xczzdv49lc2jkyamv1vlbdvfj0556y54z45cgg"; depends=[BiocGenerics Biostrings BSgenome data_table GenomeInfoDb GenomicRanges IRanges plyr QuasR RColorBrewer]; }; - SingleR = derive2 { name="SingleR"; version="2.0.0"; sha256="05rw6l0d4n9m1dd7dp55zfripx036x1riwy83sx3aj5mw4r1awb6"; depends=[beachmat BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats Matrix Rcpp S4Vectors SummarizedExperiment]; }; - SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.34.0"; sha256="0xyh4pwwbpa1bmamqdhp84qhjdc2qsxc43xgknjrrja24d06ji2j"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; - SpacePAC = derive2 { name="SpacePAC"; version="1.36.0"; sha256="0pbbqadais7lvkiz1cj1gpx35l28nb5mm53nmkif4jbd9a2p7lh5"; depends=[iPAC]; }; - Spaniel = derive2 { name="Spaniel"; version="1.12.0"; sha256="1sxjdcc31dl7ljbayrykjr0pq6yywxcysiiclziv62msyk9v4hfx"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; }; - SparseSignatures = derive2 { name="SparseSignatures"; version="2.8.0"; sha256="05zsmm8s23wms8arf2hrjx8vzklkq5py9wbqvvnp7989kb2r0bfn"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; }; - SpatialCPie = derive2 { name="SpatialCPie"; version="1.14.0"; sha256="07pl9wnn5b1ia71npvcfbm8virydj3fjrpr33gmk081yzvkqr52q"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; - SpatialDecon = derive2 { name="SpatialDecon"; version="1.8.0"; sha256="0an0wkblfv5bzsvlq7bz01hcc1vaj16l28yk621jpyb4bjva795z"; depends=[Biobase GeomxTools logNormReg Matrix repmis SeuratObject]; }; - SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.8.1"; sha256="1kdsdk6n81n83bbbk4k8wqyj441d3xjbc4hqv1rpn8ny5mjcbpqg"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SpatialFeatureExperiment = derive2 { name="SpatialFeatureExperiment"; version="1.0.3"; sha256="1616qpg31cnahj42s4gz435jj4j3d4rprr3bzxy58bdi7l2f8gv6"; depends=[BiocGenerics BiocParallel rjson S4Vectors sf SingleCellExperiment SpatialExperiment spdep SummarizedExperiment]; }; - SpeCond = derive2 { name="SpeCond"; version="1.52.0"; sha256="09f5nz799ai7y4ig6y24xnldd37qvv7yd1k258z3s9ckc76cdgd4"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; - Spectra = derive2 { name="Spectra"; version="1.8.3"; sha256="1qib5rdyhgcs657hjnvp9zfhj05z3lpd3ngybqw3pikmc93ssf0h"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; - SpectralTAD = derive2 { name="SpectralTAD"; version="1.14.1"; sha256="1iml0by529cxhj6v82046l86affipar143ddk627b3p6a2sg35zr"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; - SpidermiR = derive2 { name="SpidermiR"; version="1.28.0"; sha256="13dbz24g7l25d26piq00cpyll4cf8ss5l1kih7nvp8lrb540h6df"; depends=[AnnotationDbi gdata httr igraph miRNAtap miRNAtap_db org_Hs_eg_db]; }; - SpliceWiz = derive2 { name="SpliceWiz"; version="1.0.4"; sha256="1lf9rcqplp6zzq11zvd1barcr0a99hfw0rgxlc93sg9gi8vm5xbn"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats DT fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array heatmaply IRanges magrittr matrixStats NxtIRFdata ompBAM pheatmap plotly progress R_utils RColorBrewer Rcpp RcppProgress rhandsontable rhdf5 rtracklayer S4Vectors shiny shinydashboard shinyFiles shinyWidgets SummarizedExperiment XML zlibbioc]; }; - SplicingFactory = derive2 { name="SplicingFactory"; version="1.6.0"; sha256="1l92i96n7pgwrrl4ywwmbpl1al5x3lamn9wrplclkh0l8yx8c033"; depends=[SummarizedExperiment]; }; - SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.38.0"; sha256="0bqgn2lcmf6n188mj70cczwaps97dghmsililviq9sll91dj1gn8"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; - SpotClean = derive2 { name="SpotClean"; version="1.0.1"; sha256="1sxmj1zgx7xf3f29l9qws4sf9k6v1wwh94brawqd6qq1plv79g51"; depends=[dplyr ggplot2 Matrix RColorBrewer readbitmap rhdf5 rjson rlang S4Vectors Seurat SpatialExperiment SummarizedExperiment tibble viridis]; }; - StarBioTrek = derive2 { name="StarBioTrek"; version="1.24.0"; sha256="02j6l2dmygwmsg1kyb3wpd9qsph5a9wim6gzaljzfa3y2gcv7sx3"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; }; - Statial = derive2 { name="Statial"; version="1.0.1"; sha256="1d9crknbxrdpdvmjkm0y2im3har486dlgy5k40njiff7wcm9g4ms"; depends=[BiocParallel concaveman data_table dplyr ggplot2 SingleCellExperiment spatstat_explore spatstat_geom stringr tibble tidyr tidyselect tidyverse]; }; - Streamer = derive2 { name="Streamer"; version="1.44.0"; sha256="14wr5q5dkc5b8hb1zkh03hk7bx51hicshwjvwvy01yxfyi1jkszq"; depends=[BiocGenerics graph RBGL]; }; - Structstrings = derive2 { name="Structstrings"; version="1.14.0"; sha256="0sw8jv3qhfr0r13dpyhml3xrmvf35cnqai20mk123iq160zjq74s"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; }; - StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.13.0"; sha256="11z3acsbaifrxkghd7i8503ki9s1lc6c22880yna6qcfprlzb44g"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang rtracklayer S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; - SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.14.0"; sha256="192yj32aj012ww5yz3v5x4xplrkr5k8zp9yvmfq86hzn4jwcpdxx"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; }; - SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.16.0"; sha256="1q63aqxrk3s944kld2ji0ghng7yyy8a2d4bwar3wpp1plhkiirrq"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; - SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.28.0"; sha256="0897v6x1ki4m7kajnd60yv5qj6xa1293sj572b4dhcnfjvsf9rcn"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors]; }; - Summix = derive2 { name="Summix"; version="2.4.0"; sha256="0da94002spi4hv6a42aahdcazq66lf2nf4r6l2zg3hqxw0v6kph9"; depends=[nloptr]; }; - SwathXtend = derive2 { name="SwathXtend"; version="2.20.0"; sha256="0bki0cl034zlccqg59dmvr9g57fz6qm57kr28arsl2w1bwjmng8d"; depends=[e1071 lattice openxlsx VennDiagram]; }; - SynExtend = derive2 { name="SynExtend"; version="1.10.2"; sha256="1cbbhyqyhwdzcsphaqirm2mas8yb6mgs2pmm1x2krfypq200sji1"; depends=[Biostrings DECIPHER IRanges S4Vectors]; }; - SynMut = derive2 { name="SynMut"; version="1.14.0"; sha256="0dq5cy79pdi4ibkyvac315f14xxwahpyznpgzjybksr8xqsa5lsc"; depends=[BiocGenerics Biostrings seqinr stringr]; }; - TADCompare = derive2 { name="TADCompare"; version="1.8.0"; sha256="197cbbi7wnw0j6i8fvl051zhmjl9cgiy45pq7fcjc48vnrv5vw6y"; depends=[cluster cowplot dplyr ggplot2 ggpubr HiCcompare magrittr Matrix PRIMME RColorBrewer reshape2 tidyr]; }; - TAPseq = derive2 { name="TAPseq"; version="1.10.0"; sha256="0ilpziqzbk4qlka4dmvbkv8dr3w86hpsxm0nlakkps895z8x59sz"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; }; - TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.10.0"; sha256="0v4xi6hbzw2x0ipg49xn41fdn6mksfnmsikg9nqvq28m55hkxxmc"; depends=[ASSIGN BiocGenerics BiocParallel ComplexHeatmap DESeq2 DT edgeR gdata ggplot2 GSVA magrittr RColorBrewer reshape2 rlang ROCit S4Vectors singscore SummarizedExperiment]; }; - TCC = derive2 { name="TCC"; version="1.38.0"; sha256="17kkn8xfkf7g8y51nnzsrgn8v65qlh8a4jysn03phk7pnfrmj7jl"; depends=[baySeq DESeq2 edgeR ROC]; }; - TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.25.3"; sha256="0daq7093yipry8pp6fj6pj8x1njxs8j6cz7875qkfmzqkbis4vql"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; }; - TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.23.0"; sha256="16757szccczlv1q35y1cnmlkr12s46f63z7ijffpb15q85xlaqdx"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; }; - TCGAutils = derive2 { name="TCGAutils"; version="1.18.0"; sha256="0vhpamn5ak3b7dr3f4a4z6f7xfsprryjw8nax4f4p3flifim9kmx"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; - TCseq = derive2 { name="TCseq"; version="1.22.6"; sha256="04x2px0l0b1z94imic5bmlh8k0634zbf6kbldx94fka7gnjcqj4r"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; - TDARACNE = derive2 { name="TDARACNE"; version="1.47.0"; sha256="19zf7x2wcfnij1nlh623kim63d6wb3p42mwsn35msds778jvcbxq"; depends=[Biobase Rgraphviz]; }; - TEKRABber = derive2 { name="TEKRABber"; version="1.2.0"; sha256="139lblpf5vcpr2mni4x2l5ba4dcixnzbvav8cb90586myrwxkxf3"; depends=[apeglm biomaRt DESeq2 Rcpp SCBN SummarizedExperiment]; }; - TENxIO = derive2 { name="TENxIO"; version="1.0.1"; sha256="1k05r5lz4hcym1fk6qr3bxdjpwqg8assac1bqyd02i9fxj6a6kcn"; depends=[BiocBaseUtils BiocGenerics BiocIO GenomeInfoDb GenomicRanges Matrix MatrixGenerics R_utils RCurl readr S4Vectors SingleCellExperiment SummarizedExperiment]; }; - TEQC = derive2 { name="TEQC"; version="4.20.0"; sha256="124y6kmwk1cx3k5rjr36lx1ii6fr5xllxniggd59a8k5gdrfizg2"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; - TFARM = derive2 { name="TFARM"; version="1.20.0"; sha256="189h3cc113ikk7ixwrww7ahd20l4dnsnppylphkmxp2p1zhg8ny8"; depends=[arules fields GenomicRanges gplots stringr]; }; - TFBSTools = derive2 { name="TFBSTools"; version="1.36.0"; sha256="05kgkwmh5mcrm0xd81rzicysgknb8wrf71y2llikvma1b9c1g789"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; - TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.18.0"; sha256="0ylcr59zxyka3yngf419gzc6jqcg5yrvwsaclvaiz8fcnw0rymmv"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; }; - TFHAZ = derive2 { name="TFHAZ"; version="1.20.0"; sha256="16b3m09kn6kq8fhl873dg4h00mdnazk7kz5aipqn6nl3n5pxdpb7"; depends=[GenomicRanges IRanges ORFik S4Vectors]; }; - TFutils = derive2 { name="TFutils"; version="1.18.0"; sha256="1spfa75rxfkss8fipyq9bfdm3p71y2kabwcgjpq97q1b5wnfqazd"; depends=[AnnotationDbi BiocFileCache dplyr DT GSEABase httr magrittr miniUI org_Hs_eg_db readxl rjson Rsamtools shiny]; }; - TIN = derive2 { name="TIN"; version="1.30.0"; sha256="01cpi05y1x9d0i97w1bifi43spa9rkblqpvdx8vvbkzhxbmzkhi8"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; - TMixClust = derive2 { name="TMixClust"; version="1.20.0"; sha256="1l06mlz9fsxn552b28japiw4h5h4wjf4jcrqbpcisbrxnnp6480i"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; - TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.14.0"; sha256="0i17bikrsh408n75msli2h291iypi2higr4gr1lf76rg98lf5l4i"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; - TOAST = derive2 { name="TOAST"; version="1.12.0"; sha256="1v9nsbgwp5476ddn3irqiq4cxnpqs49w70l3qbhkm5ydg2ym3cvs"; depends=[corpcor doParallel EpiDISH GGally ggplot2 limma nnls quadprog SummarizedExperiment tidyr]; }; - TPP = derive2 { name="TPP"; version="3.26.1"; sha256="1a67in7z9lkgv281b0d60i6d8ngbr1an8pw5czjdcfv63nlgbpz1"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; - TPP2D = derive2 { name="TPP2D"; version="1.14.0"; sha256="1hba901gfm1saqyh8yf18nn4r5s6i1bpxsync0hcsy46lwx7gbwg"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; - TREG = derive2 { name="TREG"; version="1.2.0"; sha256="1skk9hqc5kyhj2jfy0lwywc3lwf6d15mfz05j57bx9z27gjkbkj4"; depends=[Matrix purrr rafalib SummarizedExperiment]; }; - TRESS = derive2 { name="TRESS"; version="1.4.0"; sha256="0ybyjkcj4xpha5c0afyx7ps13kdl45v9mbgpb75j15f76dw64162"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; }; - TRONCO = derive2 { name="TRONCO"; version="2.30.0"; sha256="0xr3vbs239zs5fgdkka4a51vf3q35w7h811qlix9kg549vabi5ir"; depends=[bnlearn circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; - TSCAN = derive2 { name="TSCAN"; version="1.36.0"; sha256="0aqn1rxzbil9m9mpcdfc0k75s5k6ljy0k4bjrn0zq3492zz4x1qi"; depends=[combinat DelayedArray fastICA ggplot2 gplots igraph Matrix mclust mgcv plyr S4Vectors shiny SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; - TTMap = derive2 { name="TTMap"; version="1.20.0"; sha256="1vfj2zq4k4fzjnq48pckxkl3bwxwghhfwq8cz14hhwf10f735pq7"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; - TVTB = derive2 { name="TVTB"; version="1.24.0"; sha256="16lhbbisgxmvp86qfkp0cdd8akjld0ryklw41hi3k4ndimzax6hf"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; - TarSeqQC = derive2 { name="TarSeqQC"; version="1.28.0"; sha256="14ima8ymdb91lpkhdnsg6q7ajxs5p1xzzcsjfhixxkm341k45j35"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; - TargetDecoy = derive2 { name="TargetDecoy"; version="1.4.0"; sha256="1xx9y5faf5ic14h7cnxpb83nr34mqzz0c846g1z28f3x9d0kg9kz"; depends=[ggplot2 ggpubr miniUI mzID mzR shiny]; }; - TargetScore = derive2 { name="TargetScore"; version="1.36.0"; sha256="00z2zv5yhxriagvcz3bwkpr9ii0r9lw4vcf7kjp7x5pjzcc6q6wq"; depends=[Matrix pracma]; }; - TargetSearch = derive2 { name="TargetSearch"; version="2.0.0"; sha256="1m5v2d67w0hi3x1b6nlsq97z197djnr23d6lj9krib1im70cclwy"; depends=[assertthat ncdf4]; }; - TileDBArray = derive2 { name="TileDBArray"; version="1.8.0"; sha256="0xmf28h7bsbdr6kds7a99y1y2j52wppxsd1zrhbsipssdhxyir15"; depends=[DelayedArray Rcpp S4Vectors tiledb]; }; - TimiRGeN = derive2 { name="TimiRGeN"; version="1.8.0"; sha256="1jy700y81jjh03y7j66c2m150wl5l31mfd4xpm5jffq4361pwnjj"; depends=[biomaRt clusterProfiler dplyr FreqProf ggdendro gghighlight ggplot2 gplots gtools igraph Mfuzz MultiAssayExperiment RCy3 readxl reshape2 rWikiPathways scales stringr tidyr]; }; - TissueEnrich = derive2 { name="TissueEnrich"; version="1.18.0"; sha256="0mkxkmc7pmyqs7nayhhxqpi3a7vwydadzzb6gizliv0w9ic3fznv"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; - TitanCNA = derive2 { name="TitanCNA"; version="1.36.0"; sha256="135l414wk4mh3hbb17djh8pw5lvhl9yf28azc6g95djrahyhgi2g"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; }; - TnT = derive2 { name="TnT"; version="1.20.0"; sha256="0mn6n5cbpivf1d8n5ili4fnc663xkn90g3jbhdzk1pgi8lkk40fl"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; - ToxicoGx = derive2 { name="ToxicoGx"; version="2.2.0"; sha256="0bi7hf05a2nyd1yqz7sl961s7b5v4lx1p68xiyk91qnxm3ipcxn0"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader dplyr ggplot2 jsonlite limma magrittr reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; - TraRe = derive2 { name="TraRe"; version="1.5.0"; sha256="06w5rk2wjam5dhiya9n6kjbjahw4i46cb05zvakcy0f8gwrvb9ic"; depends=[BiocParallel dqrng ggplot2 glmnet gplots gtools hash igraph matrixStats pvclust R_utils SummarizedExperiment]; }; - TrajectoryGeometry = derive2 { name="TrajectoryGeometry"; version="1.6.0"; sha256="02di1ijfv4rfjc1qn6zkg3bkxdc1y96dkbzhl8b4qzj23wzjy9x9"; depends=[ggplot2 pracma rgl]; }; - TrajectoryUtils = derive2 { name="TrajectoryUtils"; version="1.6.0"; sha256="130w4vpsmrkg458n3wbhvlchg171gjqybvs2w14bxa608f3fzw03"; depends=[igraph Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; - TransView = derive2 { name="TransView"; version="1.42.0"; sha256="0447jwij6bamx91gm92mjf5xc3pb4jlzsqnyragwr8wy9a3k5w2d"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; }; - Travel = derive2 { name="Travel"; version="1.6.0"; sha256="074v9hl4gzy8081mlas3mjaplchjrmk2bl4f5nkdjclh46xf3wgg"; depends=[Rcpp]; }; - TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.10.0"; sha256="0ykcngj7mf1hs6i801ivzncsd99qhmcwm9s3yr8j3qsy2d1nzki6"; depends=[ape igraph RedeR]; }; - TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="2.6.0"; sha256="136zgpn1l059i64gj6iappr6nz42z4wbxlg3zpc5npwkqrz3val2"; depends=[ape BiocGenerics BiocParallel Biostrings dplyr IRanges rlang S4Vectors SingleCellExperiment SummarizedExperiment treeio]; }; - Trendy = derive2 { name="Trendy"; version="1.20.0"; sha256="0wn0alaqrcakz1rycyvr6ya7cvx28an9haa1azcfcr17ajlhdy2b"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; - TurboNorm = derive2 { name="TurboNorm"; version="1.46.0"; sha256="1dr1nvajgk5y695y2zjzaz57qxcb24zbcv82k953hha6hzmbknyq"; depends=[affy convert lattice limma marray]; }; - TypeInfo = derive2 { name="TypeInfo"; version="1.64.0"; sha256="0f5jm3pgrq3qawd42295n5x6qm5j2kl4xgj2l7jxwy6pd1hlnwmw"; depends=[]; }; - UCell = derive2 { name="UCell"; version="2.2.0"; sha256="1g7lgpcl9p0369q9mlvpax44fk3522y6ks2k112sk057fwnjpjp3"; depends=[BiocNeighbors BiocParallel data_table Matrix SingleCellExperiment SummarizedExperiment]; }; - UMI4Cats = derive2 { name="UMI4Cats"; version="1.8.1"; sha256="1v0hsb3ddcsb0ibw74mw3v1lqwglsxrrhhpkch00rz5vzm7n72qz"; depends=[annotate BiocFileCache BiocGenerics Biostrings BSgenome cowplot DESeq2 dplyr fda GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magick magrittr org_Hs_eg_db R_utils rappdirs Rbowtie2 RColorBrewer regioneR reshape2 rlang Rsamtools S4Vectors scales ShortRead stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene zoo]; }; - UNDO = derive2 { name="UNDO"; version="1.40.0"; sha256="0yjxa0dv4j369m4hrvx163x0c9f8y68fnsq3zab9k8idfxbim500"; depends=[Biobase BiocGenerics boot MASS nnls]; }; - Ularcirc = derive2 { name="Ularcirc"; version="1.16.0"; sha256="1z10y0ix10fb4v3yf11vgh9zwbqnczrb7s0jsdn8jpkjq5nijrdy"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr plotgardener R_utils S4Vectors shiny shinydashboard shinyFiles shinyjs yaml]; }; - UniProt_ws = derive2 { name="UniProt.ws"; version="2.38.1"; sha256="0bxczw4xk02l9srg1lpxix068grx5qg3wvfh9n1b2bqnpxn4svbd"; depends=[AnnotationDbi BiocBaseUtils BiocFileCache BiocGenerics httpcache httr jsonlite progress rjsoncons RSQLite]; }; - Uniquorn = derive2 { name="Uniquorn"; version="2.18.0"; sha256="1b9cfyxszdxc7ja6g3nyn7dg4zk45mhn6l9jglhwcl6v1xnc8jay"; depends=[data_table doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; - VAExprs = derive2 { name="VAExprs"; version="1.4.0"; sha256="10scvyn6m0aaygg0xy7j5978kfi3rm1yjdmas7b3l1cx58356s9k"; depends=[CatEncoders DeepPINCS DiagrammeR keras mclust purrr scater SingleCellExperiment SummarizedExperiment tensorflow]; }; - VCFArray = derive2 { name="VCFArray"; version="1.14.0"; sha256="1zcd7lx9vypym4svpg47lgnmrczgrswzpr5dwcfm6h7c3jwnbnhs"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - VDJdive = derive2 { name="VDJdive"; version="1.0.0"; sha256="0qc95d6b3gy4rh90xp1iib88yjhr9v3jgja805an3rqr3c6r7a0m"; depends=[basilisk BiocParallel cowplot ggplot2 gridExtra IRanges Matrix RColorBrewer reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; - VERSO = derive2 { name="VERSO"; version="1.8.0"; sha256="1535si34m13w7z2k6ys2xvj73kdwik618iy8swvb44z73vg2xkp8"; depends=[ape Rfast]; }; - VaSP = derive2 { name="VaSP"; version="1.10.0"; sha256="1zvva74lwhng0j4k1kya6q07xgrav2f9pzxsdzgm1rrmnqcihdyb"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors]; }; - VanillaICE = derive2 { name="VanillaICE"; version="1.60.0"; sha256="148xbymfn3za74z5ml4csj6q875r7hk3iafgcifc797gnw203sl8"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; - VarCon = derive2 { name="VarCon"; version="1.6.0"; sha256="0y0arfjx5v6b4fc26xyv8ycvy5a2k77dkxgn7if7svjwkk39sgwk"; depends=[Biostrings BSgenome GenomicRanges ggplot2 IRanges shiny shinycssloaders shinyFiles]; }; - VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.44.1"; sha256="13zim7dglsd5w39v22d2qa3d1h5dx33c1r4fz3vzri64kac0lhzx"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges MatrixGenerics Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; - VariantExperiment = derive2 { name="VariantExperiment"; version="1.12.0"; sha256="129a0ya2jq600r0dfx3n70kqchh9a8d23xvc1ym2zlm407hi0bnj"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SeqVarTools SNPRelate SummarizedExperiment]; }; - VariantFiltering = derive2 { name="VariantFiltering"; version="1.34.0"; sha256="110db9gcla796mbll3pin0hv2qp8r6khx0zzqfgzkp4mcyjxi62y"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; - VariantTools = derive2 { name="VariantTools"; version="1.40.0"; sha256="181igcmlyx3ddmhml9wqcgw6ffdrqpmg4imd6ipf68c90agdgaz0"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - VegaMC = derive2 { name="VegaMC"; version="3.36.0"; sha256="07lpzzkwx9g2gcyqg33xxshwylmyzgbf2p63ck3kkyqv64ylkhw0"; depends=[Biobase biomaRt]; }; - VennDetail = derive2 { name="VennDetail"; version="1.14.0"; sha256="0976zqbp3xgxlq0b28r0z7shhmn7nrphhxqv8j3wdk3xxbgy4mzg"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; }; - ViSEAGO = derive2 { name="ViSEAGO"; version="1.12.0"; sha256="0y177yjw9bnsnfqnylwv8zhk7fyspx9qv94yw7jmfhxsh7azpafk"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; }; - Voyager = derive2 { name="Voyager"; version="1.0.10"; sha256="1d9zkirfc9gd0mxagyb8xa1s531ahr6ld3pb3c5qd1f3dsbfr6a6"; depends=[BiocParallel bluster ggnewscale ggplot2 Matrix patchwork rlang S4Vectors scales scico sf SingleCellExperiment SpatialExperiment SpatialFeatureExperiment spdep SummarizedExperiment]; }; - VplotR = derive2 { name="VplotR"; version="1.8.0"; sha256="0v9qbz9vg3cd7jjb0bhl2qp8dbwi4f98l4wmppzkz3il624w8ny5"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; }; - Wrench = derive2 { name="Wrench"; version="1.16.0"; sha256="0n7mvj9jdp8w5w64i49kkqzbrvpv2vzx6y6fb7g2sqp24wqrn39x"; depends=[limma locfit matrixStats]; }; - XDE = derive2 { name="XDE"; version="2.44.0"; sha256="1djsr92zyh4739ra8v36nylxr3z7rx9lll25mm06vc3l77jxlfzp"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; }; - XINA = derive2 { name="XINA"; version="1.16.0"; sha256="1c97lsb5shixh4n4mi9kh4gz4qnia9vq736rnzxbs03n5bvlmwlq"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; - XNAString = derive2 { name="XNAString"; version="1.6.0"; sha256="05bs972b132mccf7k0v6rmacbck0ydi5x06fgzs05m48ykkbx988"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; }; - XVector = derive2 { name="XVector"; version="0.38.0"; sha256="0ygdyh3s4qsaay930a5lbnmgh6a4gqp5ck9ww466yk0jyk1hxfp9"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; - Xeva = derive2 { name="Xeva"; version="1.14.0"; sha256="1qy3hj0dijb859q7a2ygb6il4mn2m3f9chy8lkj6lkq64xlayjxg"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; }; - YAPSA = derive2 { name="YAPSA"; version="1.24.0"; sha256="17yxzqvyaa423k0rskahlgqxcsi70flgsxniry3f4m8yvmghxxkz"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMRplus pracma reshape2 SomaticSignatures VariantAnnotation]; }; - a4 = derive2 { name="a4"; version="1.46.0"; sha256="1sis4hwrxyn2x96yysz82gffl2kkj68ry945y15zwikwk80s31hb"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; - a4Base = derive2 { name="a4Base"; version="1.46.0"; sha256="14diri7gswd6h5p3bdhh20fy7i54d270mq985qcdvdyhx4kpw6g6"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; }; - a4Classif = derive2 { name="a4Classif"; version="1.46.0"; sha256="0lirj0qzzrm996g8yh30x61cg1qkh436qd8xzgv3y3y3n5jj5d3w"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; }; - a4Core = derive2 { name="a4Core"; version="1.46.0"; sha256="0plgfzsvg220v6k6p0g7izsfw2lj78331lqyvz0p9vd91ynwp41k"; depends=[Biobase glmnet]; }; - a4Preproc = derive2 { name="a4Preproc"; version="1.46.0"; sha256="00xs1vayl8v6in79iv7lwbn52yyyq4lv6k3k727g7il8x17mi8i0"; depends=[Biobase BiocGenerics]; }; - a4Reporting = derive2 { name="a4Reporting"; version="1.46.0"; sha256="09q8ng5kp47bqpj7m2y2112fkjxcnhzxk9v80hqksm8h1df46riv"; depends=[xtable]; }; - aCGH = derive2 { name="aCGH"; version="1.76.0"; sha256="05q303bf8acvhbdzqxqk2gf12vg0fdqknlxryn2cs8nijx40zp46"; depends=[Biobase cluster multtest survival]; }; - abseqR = derive2 { name="abseqR"; version="1.16.0"; sha256="1z5an4vsm55a0qr46qmp8562vc3xdam5f3840r8hcdnn5dvzw414"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; - acde = derive2 { name="acde"; version="1.28.0"; sha256="1d47hbna68qm517afk1wb0w9gb8j52p7nqh5axcc6h76zppsc1sp"; depends=[boot]; }; - adSplit = derive2 { name="adSplit"; version="1.68.0"; sha256="0a05j1g42wnw5lcn6g6vp2z3mnjz185b2hvdg362ln270r19gch6"; depends=[AnnotationDbi Biobase cluster GO_db KEGGREST multtest]; }; - adductomicsR = derive2 { name="adductomicsR"; version="1.14.0"; sha256="0h180k4r1lrij1smpibbqgiki1hb2q87n5ay6habig4bxzbx773x"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; }; - affxparser = derive2 { name="affxparser"; version="1.70.0"; sha256="0p42rpyh96aph9jr8kiyjvv860jn7m7ji2nrib2vr2nl0jyaxqjs"; depends=[]; }; - affy = derive2 { name="affy"; version="1.76.0"; sha256="1iix9mq4aph6avs2qr64a7hip461cif56k6npvs5g69nj3rn50gj"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; - affyContam = derive2 { name="affyContam"; version="1.56.0"; sha256="0phf9rvxr45zq9m5rcjsiixmj9ilz518l628l8cd1hzfdk240ffy"; depends=[affy affydata Biobase]; }; - affyILM = derive2 { name="affyILM"; version="1.50.0"; sha256="0i2hjaqjz06ym5kbw5da1h3cahc630mjwljsji1l2ks0gjcipll0"; depends=[affxparser affy Biobase gcrma]; }; - affyPLM = derive2 { name="affyPLM"; version="1.74.2"; sha256="0f0faxjzlg0znhjfvf1490yc54npkx659jx76cddm5hk7q0blv3v"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; - affycomp = derive2 { name="affycomp"; version="1.74.0"; sha256="18bxnjcl7cbgwm3yf58608ghwnpci94xgil11zmbpgzgrpv9pkrs"; depends=[Biobase]; }; - affycoretools = derive2 { name="affycoretools"; version="1.70.0"; sha256="17slls8dihjnpm6bynic8cm2fbnfl5iqwimz0wz7c9x44d1bxi4l"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; - affyio = derive2 { name="affyio"; version="1.68.0"; sha256="1bdcz9sz4khs7p4ddryc4ir0fwcjrkwqka8y0c9n36ykiv4myfib"; depends=[zlibbioc]; }; - affylmGUI = derive2 { name="affylmGUI"; version="1.72.0"; sha256="0jds73pxqf522wcg8qd4b4k1qbhn51av5md1nhgcdnb6is0lzvxi"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; - aggregateBioVar = derive2 { name="aggregateBioVar"; version="1.8.0"; sha256="1snsc2430cc7cd0k01n1rwa6vympd79g1mcch0paxxkq7msvfn42"; depends=[Matrix rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble]; }; - agilp = derive2 { name="agilp"; version="3.30.0"; sha256="15cw004g1vxfwvf939018vmlv9gym4r473jissamkygqdv78hcr0"; depends=[]; }; - airpart = derive2 { name="airpart"; version="1.6.0"; sha256="07zxv0sjhlajaw4gxpjni14qyyqn70ar8ph5cpibzcky1lx6pmkl"; depends=[apeglm clue ComplexHeatmap dplyr dynamicTreeCut emdbook forestplot ggplot2 lpSolve matrixStats mclust pbapply plyr RColorBrewer rlang S4Vectors scater SingleCellExperiment smurf SummarizedExperiment]; }; - alevinQC = derive2 { name="alevinQC"; version="1.14.0"; sha256="0rd64j4hkdk2d6mlld6qkv2m96lqc93807xjdf05xm8qkyx8g8y2"; depends=[cowplot dplyr DT GGally ggplot2 Rcpp rjson rlang rmarkdown shiny shinydashboard tximport]; }; - alpine = derive2 { name="alpine"; version="1.24.0"; sha256="0rjnwljh4c2f7ml0m14pllns4pvyjwwf23qsn6zjygm5x04bapf0"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors stringr SummarizedExperiment]; }; - altcdfenvs = derive2 { name="altcdfenvs"; version="2.60.0"; sha256="0fm4l93j6nm1w1w57zzryc1hkzapp8l16pkwjzdzllvwvsnsg8r0"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; - amplican = derive2 { name="amplican"; version="1.20.0"; sha256="1c990i6gxbarcpbdpkz017x94spwzap95l95synlizbkyif4z8ij"; depends=[BiocGenerics BiocParallel Biostrings data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; }; - animalcules = derive2 { name="animalcules"; version="1.14.0"; sha256="1alpsamrglgvzhcibkaf7m3gyiv61wbj1gvsq4lw6vjka100j9qr"; depends=[ape assertthat biomformat caret covr DESeq2 dplyr DT forcats ggplot2 glmnet GUniFrac lattice limma magrittr Matrix MultiAssayExperiment plotly plotROC rentrez reshape2 S4Vectors scales shiny shinyjs SummarizedExperiment tibble tsne umap vegan XML]; }; - annaffy = derive2 { name="annaffy"; version="1.70.0"; sha256="0qxihlhx7ijspvgzdp8zxzrc44y9pwkygvsllh4v47p85ham49fg"; depends=[AnnotationDbi Biobase BiocManager DBI GO_db]; }; - annmap = derive2 { name="annmap"; version="1.40.0"; sha256="18ia189qgsbcivpfsfss05dnd3kdc6gmswq8i1whwf9n227b2cv3"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; - annotate = derive2 { name="annotate"; version="1.76.0"; sha256="06jmnv36y3n6pl1vs6mp14sgyzl4l37g13diaa49k7qwp1kdpl3a"; depends=[AnnotationDbi Biobase BiocGenerics DBI httr XML xtable]; }; - annotationTools = derive2 { name="annotationTools"; version="1.72.0"; sha256="1z5vgblhi1kj2n9d4kbqgvwnm48372q0szgjshch8g39dypijvhd"; depends=[Biobase]; }; - annotatr = derive2 { name="annotatr"; version="1.24.0"; sha256="08f3xikgb0z1j7n8i04yn1dlfj8rxc76nmf5b7i5ljcp0jqiv07n"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; - anota = derive2 { name="anota"; version="1.46.0"; sha256="1a9xgcp48zjql6an3kiv8li4saw10k1dl7qzyyw84xvx856ilv97"; depends=[multtest qvalue]; }; - anota2seq = derive2 { name="anota2seq"; version="1.20.0"; sha256="14ggggfa6mdqcb2hfvann9mb66s7a9nxlnh31zblb3mrrjizg1x3"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; - antiProfiles = derive2 { name="antiProfiles"; version="1.38.0"; sha256="0f32373ncfjbvy05yngmfhhdgyc99a4idz3ry2xlabdmrbs5yac3"; depends=[locfit matrixStats]; }; - apComplex = derive2 { name="apComplex"; version="2.64.0"; sha256="0ycchrdhx7zh62f0p0gxm7g58m2w3c2lfkaasrwydspd3jx0rsna"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; - apeglm = derive2 { name="apeglm"; version="1.20.0"; sha256="1hk2y7r734wdd56f18l03kyq9p35kv653a5f7z2cjkq37gvcqrd1"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; - appreci8R = derive2 { name="appreci8R"; version="1.16.0"; sha256="1ssldnz4k21i4zpa6r9ja9wvzdlgbrr53pmivwjj7kbvy02906p7"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; - aroma_light = derive2 { name="aroma.light"; version="3.28.0"; sha256="01g9vfkmpfkn9nv71jyybq93lid6x93jbadjahngy98w67n3sin4"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; - arrayMvout = derive2 { name="arrayMvout"; version="1.56.0"; sha256="0g66s64n4qlvhkanp33bbvpi93rsdx5xq0mjr96d0195qbf6k156"; depends=[affy affyContam Biobase lumi mdqc parody]; }; - arrayQuality = derive2 { name="arrayQuality"; version="1.76.0"; sha256="0b5q71bpl9ln26622jvchd4f9i4kwayqkm9b75yj0a69imbfcn4s"; depends=[gridBase hexbin limma marray RColorBrewer]; }; - arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.54.0"; sha256="0jz9b3f8x1aal4sskq1a09jpavhm8alggwbj3ka42fb89xymrz33"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; - artMS = derive2 { name="artMS"; version="1.16.0"; sha256="17pb8ba2p8kk72b1p9x46h7xw3z2js5612388d4lsm4gl2flczyd"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; - atSNP = derive2 { name="atSNP"; version="1.14.0"; sha256="12za1agpbjjg4i94mikbkdbwqnkzzwz07v0gwdc7lpa9899q2ycb"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; - atena = derive2 { name="atena"; version="1.4.1"; sha256="0j6jq1cll8440i2srmy4lbvvyqawailk9byl9bnnzln1mdgys8r7"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix matrixStats Rsamtools S4Vectors scales sparseMatrixStats SQUAREM SummarizedExperiment]; }; - attract = derive2 { name="attract"; version="1.50.0"; sha256="0r5vykjqq33gchqv0wp2i6wpnk95cv26w5j4yqxcnw0bnqfhrgkm"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; - autonomics = derive2 { name="autonomics"; version="1.6.0"; sha256="1nbfp2p33ana2dpadf5m7s1xl1z0ccxhxkrmd5ya5n44rvk1drrq"; depends=[abind assertive BiocFileCache BiocGenerics colorspace data_table edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; }; - awst = derive2 { name="awst"; version="1.6.0"; sha256="0dvzkqpjv7whns9q8zj6n2nyvnaw2ib7i53vf049n94x52vh9x15"; depends=[SummarizedExperiment]; }; - bacon = derive2 { name="bacon"; version="1.26.0"; sha256="1v5kvvbc5fwvs84d2aq6gq6f6z0l68n7626gcnc8mh3sc27lxz53"; depends=[BiocParallel ellipse ggplot2]; }; - ballgown = derive2 { name="ballgown"; version="2.30.0"; sha256="0iy24vj4lg1k4fzdxf9blc47xsp4dmplajgabsb2s925l7jpxfvw"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; - bambu = derive2 { name="bambu"; version="3.0.8"; sha256="072rys45f9nl4b2dq559qakjcp2990ncdw49j49761izxgc7byzs"; depends=[BiocGenerics BiocParallel BSgenome data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; - bamsignals = derive2 { name="bamsignals"; version="1.30.0"; sha256="059pkm5pg9ssd0l8xrm13d0hscqnmlqcb4qb5p4fbzgx6088zg05"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; - bandle = derive2 { name="bandle"; version="1.2.2"; sha256="1zcwlrkhdzn5535mvma4nainv3fdjkh4c75bvkds6n8z68nqzqal"; depends=[BH Biobase BiocParallel BiocStyle circlize dplyr ggalluvial ggplot2 ggrepel knitr lbfgs MSnbase plyr pRoloc pRolocdata Rcpp RcppArmadillo rlang robustbase S4Vectors tidyr]; }; - banocc = derive2 { name="banocc"; version="1.22.0"; sha256="0d7ss3df6zcfsh8kgy35ghxa6f27ynjhdbi6mdypgk9q24f64r78"; depends=[coda mvtnorm rstan stringr]; }; - barcodetrackR = derive2 { name="barcodetrackR"; version="1.6.0"; sha256="1b3z83nkl8csxs88rcbmkkfjps71mwnylvpy3kjzyi02xw0kh0c1"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; - basecallQC = derive2 { name="basecallQC"; version="1.22.0"; sha256="0zaqgijazcii983agdhav2kn64kpdlmnmw54ipdgcbza6ky26hvh"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; - basilisk = derive2 { name="basilisk"; version="1.10.2"; sha256="14sgm3ia7jj5jckysqkljrffafg6rl8i7fgzsxv8ycnrwbd05d09"; depends=[basilisk_utils dir_expiry reticulate]; }; - basilisk_utils = derive2 { name="basilisk.utils"; version="1.10.0"; sha256="0gh29w8arg0glawprwshaixv07y756c4lx21h8jjbqlsrbspp8fw"; depends=[dir_expiry]; }; - batchelor = derive2 { name="batchelor"; version="1.14.1"; sha256="1yj84ba6px14hbqg8526527vfcxmzvmly34f7hba4vybdm1jscfm"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp ResidualMatrix S4Vectors ScaledMatrix scuttle SingleCellExperiment SummarizedExperiment]; }; - bayNorm = derive2 { name="bayNorm"; version="1.16.2"; sha256="066hxzhpgif8afa3ym9ksfppr6vb2j92gdis8613n7asd0pw5ci1"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; - baySeq = derive2 { name="baySeq"; version="2.31.0"; sha256="0lq2wfm3ibrpha9mqhhp6dgsx4jm2kwxvvrj0b62dzqspvg743wh"; depends=[abind edgeR GenomicRanges]; }; - bcSeq = derive2 { name="bcSeq"; version="1.20.0"; sha256="1dynr37kqs0p0as3psa7bw3lxnqwy7aj58mxk8xjsfm8xf7v4733"; depends=[Biostrings Matrix Rcpp]; }; - beachmat = derive2 { name="beachmat"; version="2.14.0"; sha256="0sa1wh997jfiz2y0dr7v12b7pvlf7icgv6arlyqy57winbnqa96m"; depends=[BiocGenerics DelayedArray Matrix Rcpp]; }; - beadarray = derive2 { name="beadarray"; version="2.48.0"; sha256="0fr24gj6h2rr1r4l3n8myjaihjqi5yinwdsxqa5ih8m3v72dlrby"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; }; - beadarraySNP = derive2 { name="beadarraySNP"; version="1.64.0"; sha256="06hy89pclbyxjw5yf5i9bc3wr789b9pmhd9sdchgljlijs9vcj6g"; depends=[Biobase quantsmooth]; }; - beer = derive2 { name="beer"; version="1.2.0"; sha256="0njilbdgrv59ny4vks4xamf00qp3xagkks0sszwqq49lpzdicglj"; depends=[BiocParallel cli edgeR PhIPData progressr rjags SummarizedExperiment]; }; - benchdamic = derive2 { name="benchdamic"; version="1.4.0"; sha256="1f4rnbxxjbd3jyvl6m94hyl15bzxs1zbwyxqkypfmxa7gmj2vcrq"; depends=[ALDEx2 ANCOMBC BiocParallel corncob cowplot dearseq DESeq2 edgeR ggdendro ggplot2 ggridges limma MAST metagenomeSeq MGLM NOISeq phyloseq plyr RColorBrewer reshape2 Seurat SummarizedExperiment tidytext TreeSummarizedExperiment zinbwave]; }; - bgx = derive2 { name="bgx"; version="1.64.0"; sha256="1ylg9bnq8iwax0ap4c19v4mkbq673s8dfv49d94znsryg3fp93dl"; depends=[affy Biobase gcrma Rcpp]; }; - bigPint = derive2 { name="bigPint"; version="1.14.0"; sha256="1smf3w5a60jc0bpip5131ad9ykmnrcd33qi3pc3m50g6kn023wz2"; depends=[DelayedArray dplyr GGally ggplot2 gridExtra hexbin Hmisc htmlwidgets plotly plyr RColorBrewer reshape shiny shinycssloaders shinydashboard stringr SummarizedExperiment tidyr]; }; - bigmelon = derive2 { name="bigmelon"; version="1.24.0"; sha256="094d43yv8af8sijp43ndcaincnsf3ng32vgwh6bfazlq5d601r6y"; depends=[Biobase BiocGenerics gdsfmt GEOquery illuminaio methylumi minfi wateRmelon]; }; - bioCancer = derive2 { name="bioCancer"; version="1.26.04"; sha256="1xdp38i94ldkm4cqwbx93k9n8frrj2f1yrhzmrs2dda46qc0zsgh"; depends=[AnnotationDbi Biobase clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier htmlwidgets httr org_Hs_eg_db plyr R_oo radiant_data reactome_db ReactomePA shiny tibble visNetwork XML]; }; - bioDist = derive2 { name="bioDist"; version="1.70.0"; sha256="1fnx3q5arsilrvnhndplap8h4ydi9bvmlpfllj1li124hn5n2w3d"; depends=[Biobase KernSmooth]; }; - bioassayR = derive2 { name="bioassayR"; version="1.36.0"; sha256="0r56r4qxibgblriyfbd46i8jhc2bfr9ndr8i30920v9kc3n83cav"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; - biobroom = derive2 { name="biobroom"; version="1.30.0"; sha256="02gdc26bs0yx7hb53b8ncipsaw6ynfvjcx64qxkxxq1c4awjkhzy"; depends=[Biobase broom dplyr tidyr]; }; - biobtreeR = derive2 { name="biobtreeR"; version="1.10.0"; sha256="1j6w19k124x46gj2p8f1z0i2c03yhiiy1w0fqf504b2r7wy90jxc"; depends=[httpuv httr jsonlite stringi]; }; - biocGraph = derive2 { name="biocGraph"; version="1.60.0"; sha256="0ysdmv2hyl8jnmr42lkyvgfqb0z89f5p649ahx0ygs6fw0z226xa"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; - biocViews = derive2 { name="biocViews"; version="1.66.3"; sha256="0ddxz7a8csf1l4srnjcgg5ps00fkcbv99y5wa0yrl6p9zr2d61qy"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; - biocthis = derive2 { name="biocthis"; version="1.8.3"; sha256="0h1cwir6m3zg728vdxxz03rfwysw92m9djdfj0vayixli2j4xz5a"; depends=[BiocManager fs glue rlang styler usethis]; }; - biodb = derive2 { name="biodb"; version="1.6.1"; sha256="0mbqsias2ajw29d1wgl10y2cjqv3slrsgifccz0kh9l5r6bk28vz"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; - biodbChebi = derive2 { name="biodbChebi"; version="1.4.0"; sha256="02c0zvchkd9xf2gakd2ksa4mk8hd8bvg80paq2hx96xqdznhsh49"; depends=[biodb R6]; }; - biodbExpasy = derive2 { name="biodbExpasy"; version="1.2.0"; sha256="16g7xy6r8ggbvjxjl4frfsvsar8hcwgla7q4mmpr01gv9xjvn059"; depends=[biodb chk R6 stringr]; }; - biodbHmdb = derive2 { name="biodbHmdb"; version="1.4.0"; sha256="0zhwf313wilwmxxyibxx62bp9h6rp9jc7c9l46sbdgbcfkk3zdws"; depends=[biodb R6 Rcpp testthat]; }; - biodbKegg = derive2 { name="biodbKegg"; version="1.4.0"; sha256="1027jxyhz1spc9wk41xscnbhzimfji0xa6zfgld9gzpjms48gp49"; depends=[biodb chk lifecycle R6]; }; - biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.4.1"; sha256="0n5c5h0jq8hkmf9hw1phz46qz66jagd5waaf8mi14qnll532xhwx"; depends=[biodb lifecycle R6]; }; - biodbMirbase = derive2 { name="biodbMirbase"; version="1.2.2"; sha256="1v54ki7r2x8iyl9yf3v26ld6vvvl00qckq3m2mvswcbgvgldvhcg"; depends=[biodb chk R6 stringr]; }; - biodbNcbi = derive2 { name="biodbNcbi"; version="1.2.0"; sha256="0bjw5q9ls7p5pi13rzmax4iqfi5l7b0inga9b96bz18mcq071pqp"; depends=[biodb chk R6 XML]; }; - biodbNci = derive2 { name="biodbNci"; version="1.2.0"; sha256="18kjpc71gis82hkg6h7jn0qqwc3m2dlc6ddmyr9cfmm1wvr3fdc6"; depends=[biodb chk R6 Rcpp testthat]; }; - biodbUniprot = derive2 { name="biodbUniprot"; version="1.4.0"; sha256="1xg4f72maczqm2srscnzj3fhibnsya49d9a00d5r6qg1avc3g33v"; depends=[biodb R6]; }; - biomaRt = derive2 { name="biomaRt"; version="2.54.1"; sha256="13nhp97cklaimc3cd931hz584nc58szk2gyxrkfhp7knfli6jbpi"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; }; - biomformat = derive2 { name="biomformat"; version="1.26.0"; sha256="0728fpj05bvna5lpm29pdbn4slfmq16nz35as086ddbl2hhc9ni1"; depends=[jsonlite Matrix plyr rhdf5]; }; - biomvRCNS = derive2 { name="biomvRCNS"; version="1.38.0"; sha256="0n026b744ah5kcnipsyiqqs7vlz5n5im1kgv35i2pgxyzvf7a8sn"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; - biosigner = derive2 { name="biosigner"; version="1.26.0"; sha256="11ncmxy4wqdg30w8a6dgcsywyzda49f9al435fz3pfj5rmlbbrlj"; depends=[Biobase e1071 MultiAssayExperiment MultiDataSet randomForest ropls SummarizedExperiment]; }; - biotmle = derive2 { name="biotmle"; version="1.22.0"; sha256="1sbwbz0xdws31lsh46mfcijqmi6rm050r1d6vwii65q686x5j43w"; depends=[assertthat BiocGenerics BiocParallel dplyr drtmle ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; - biovizBase = derive2 { name="biovizBase"; version="1.46.0"; sha256="0k56bq3g5vwnd0vkqg7x7v7i9bakwb8s1yl7k5nwj26k4aw96lw6"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - biscuiteer = derive2 { name="biscuiteer"; version="1.12.0"; sha256="1fq2nj0vclpxavqj5qx7jc3ympg00izxn9fpy4mlhyp9l921z13m"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute IRanges Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - blacksheepr = derive2 { name="blacksheepr"; version="1.12.0"; sha256="0a30w7n4rcsq4h7ggji8nbk1zx4h9ci7di01xnhks898f59w9ii0"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; - blima = derive2 { name="blima"; version="1.32.0"; sha256="1myq7giagr5bhkk96w9dijl01pcqkv288hakv7xbawv5wf5mcima"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; - bluster = derive2 { name="bluster"; version="1.8.0"; sha256="1xi9vl09nm95l35kb9n3pn3j9qxw8976lss3cx0ppwnxd2mjr6vy"; depends=[BiocNeighbors BiocParallel cluster igraph Matrix Rcpp S4Vectors]; }; - bnbc = derive2 { name="bnbc"; version="1.20.0"; sha256="18wwic1d13ywn85p415pwg2bh32qiri0kzwsa9yk7m415l87i123"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; }; - bnem = derive2 { name="bnem"; version="1.6.0"; sha256="0v7xn2hj8q53vjhzjrc0vvqvw13waf3mkf4zs0nakiwrdhbr0117"; depends=[affy binom Biobase CellNOptR cluster epiNEM flexclust graph limma matrixStats mnem RColorBrewer Rgraphviz rmarkdown snowfall sva vsn]; }; - borealis = derive2 { name="borealis"; version="1.2.2"; sha256="0nhg29pr1d0wyn10cay5yi3p4vq5d7vgqdsq0c1vrf29aphzjf69"; depends=[Biobase bsseq cowplot doParallel dplyr DSS foreach gamlss gamlss_dist GenomicRanges ggplot2 plyr purrr R_utils rlang snow]; }; - brainflowprobes = derive2 { name="brainflowprobes"; version="1.12.0"; sha256="17fdig1ja8mqx6jhpplqmyq8314gk2fid8dd2bfbwj61421gqp4d"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; }; - branchpointer = derive2 { name="branchpointer"; version="1.24.0"; sha256="1900czfg3a9x8fqqqs3x7saph7k4ky6wk0f41d8fjdj88fyxkgsk"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; - breakpointR = derive2 { name="breakpointR"; version="1.16.0"; sha256="0j1f43lhgkapjyxlil9fflqh9nf3andhmvirdcv45y60wvljn4gx"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; - brendaDb = derive2 { name="brendaDb"; version="1.12.0"; sha256="19qig4anjzg7p3yxcx48lh0j6vz903q8qz92c28v45bki4mglz82"; depends=[BiocFileCache BiocParallel crayon dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr]; }; - bridge = derive2 { name="bridge"; version="1.62.0"; sha256="02rf15f3r1kazxml8mk9mi1zxgglsdfrpbg7ny9w0s65f413grg8"; depends=[rama]; }; - bsseq = derive2 { name="bsseq"; version="1.34.0"; sha256="0rd0ihr1ai1kvly2zf5y2qx3qyhk3ag2mdsrwqnzs67xkv99glsf"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; - bugsigdbr = derive2 { name="bugsigdbr"; version="1.4.3"; sha256="0kicaqfq3j2njm472rgbr78d1mf5vgshrxb97dh4knvby3668b3r"; depends=[BiocFileCache vroom]; }; - bumphunter = derive2 { name="bumphunter"; version="1.40.0"; sha256="0jwbhd2fhm1w5slwhz8krnw835a8qb4akm3n3pv867bvi0xnp3g2"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; - cBioPortalData = derive2 { name="cBioPortalData"; version="2.10.3"; sha256="0i61prk84jrn02r7127ryw4gv3zbiv5fmfy5nk6gf7x9i77vkynw"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; - cTRAP = derive2 { name="cTRAP"; version="1.16.0"; sha256="1k2zd67x5j1w4ra87y3w1zkn7ssld6f7siq6ibx3bks3h54rvj1x"; depends=[AnnotationDbi AnnotationHub binr cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter htmltools httr limma pbapply purrr qs R_utils readxl reshape2 rhdf5 rlang scales shiny shinycssloaders tibble]; }; - cageminer = derive2 { name="cageminer"; version="1.4.0"; sha256="0nwphmmg0ylw9v9mx88ygv37qaq02n2ypgbvnqx08hb15bk4cr5b"; depends=[BioNERO GenomeInfoDb GenomicRanges ggbio ggplot2 ggtext IRanges reshape2]; }; - calm = derive2 { name="calm"; version="1.12.0"; sha256="16ab0hxfk9m3jplwrf5ybxikz7ai54l7xmgv2kcc98ima8lbaml6"; depends=[mgcv]; }; - canceR = derive2 { name="canceR"; version="1.32.0"; sha256="1w5nsbw2m3dbzj5nph5p5rzl0476j2zacd735f1yzl0y2241vrjx"; depends=[Biobase circlize Formula geNetClassifier GSEABase httr phenoTest plyr R_methodsS3 R_oo rpart RUnit survival tkrplot]; }; - cancerclass = derive2 { name="cancerclass"; version="1.42.0"; sha256="1px53j601a17gslyla7msq6cvxghjqpy818cqdxp4ffq13wsrydr"; depends=[binom Biobase]; }; - cardelino = derive2 { name="cardelino"; version="1.0.0"; sha256="1ma4clkrkrjvy12ln2d2smyzzsz9y9554f5wgwmh9kv6s4xc66qs"; depends=[combinat GenomeInfoDb GenomicRanges ggplot2 ggtree Matrix matrixStats pheatmap S4Vectors snpStats VariantAnnotation vcfR]; }; - casper = derive2 { name="casper"; version="2.32.0"; sha256="0ibdfx7fb99zp5p94f5aga6kpnwg19500pg4nlf2yiqddpsc864s"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; - categoryCompare = derive2 { name="categoryCompare"; version="1.42.0"; sha256="1m9kj5ks35wklb30zamzk450sgf01mc1k7a4wi8y1jrp7i32d5ci"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; - cbaf = derive2 { name="cbaf"; version="1.20.1"; sha256="1d0cr30gphccsh9d34821cm4dcshpv4ql1a8vdnv9xmbyjvlrmk3"; depends=[BiocFileCache cBioPortalData genefilter gplots openxlsx RColorBrewer]; }; - cbpManager = derive2 { name="cbpManager"; version="1.6.0"; sha256="0qvlyy5m00nxzyaap8lwc9l5mdgr5pya7x7p56cwcwfhlji1d0wm"; depends=[basilisk dplyr DT htmltools jsonlite magrittr markdown plyr rapportools reticulate rintrojs shiny shinyBS shinycssloaders shinydashboard vroom]; }; - ccImpute = derive2 { name="ccImpute"; version="1.0.2"; sha256="0vv2mpfi3xa4hmpdi0b8fj2prs15q3i2dim0mpxi3gfpczqdsgk5"; depends=[BiocParallel matrixStats Rcpp RcppEigen SIMLR]; }; - ccfindR = derive2 { name="ccfindR"; version="1.18.0"; sha256="0snxm5zqa93q9hmqlkbij8saw2q0hhh95d12jmffp5yf1n1d8r9s"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; - ccmap = derive2 { name="ccmap"; version="1.24.0"; sha256="1cb6z30vx3r2d1qdvrjb9qa6m5dglar8yji9dg9mz5yiygdbvwf7"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; - ccrepe = derive2 { name="ccrepe"; version="1.34.0"; sha256="1xnlsf0gird9ya0gd2xqjy6c85q5yrbaxv2kg31cn0wdlg55dgfh"; depends=[infotheo]; }; - ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.10.0"; sha256="1phrn8aisjnbzqh7npvngrnk9m1bxwv6d0as1sf1gy8ks4piy4r7"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; - celaref = derive2 { name="celaref"; version="1.16.0"; sha256="13a0hb72i9vnslsmidgwzdsma6qfxq1syfbij726viwaxl6zmxp7"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; - celda = derive2 { name="celda"; version="1.14.2"; sha256="1klpby6m5wr0s2v8s62cjq2vp3kvrlni13pb48wmp2d191vaxl62"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gtable Matrix matrixStats MCMCprecision multipanelfigure plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; }; - cellHTS2 = derive2 { name="cellHTS2"; version="2.62.0"; sha256="0gkdvdda90m9qq2j5svmrip0kc601zbg7kca4m71qymwvvrdj4nl"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; }; - cellTree = derive2 { name="cellTree"; version="1.27.0"; sha256="0yfr59fcbdj03ikkpvw1qcxqrjbkz7nkfmb5m1xr4k9qs39bq9sb"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; - cellbaseR = derive2 { name="cellbaseR"; version="1.22.0"; sha256="0i1b5lavzd0jqa5r1l1b3c22ana5vrk7f68385n7g1l8i5fl5ldr"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; - cellity = derive2 { name="cellity"; version="1.26.0"; sha256="0f1d83q3nbvjsk3077793i234yqy71yq6plvvya93vxq32b7ppsh"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; - cellmigRation = derive2 { name="cellmigRation"; version="1.6.0"; sha256="0aj7px50vy27ijx1sgszsxpv13rzsjlsa14m11hwmxdnz1yiihyf"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; }; - cellscape = derive2 { name="cellscape"; version="1.22.0"; sha256="0bbsq5hqhsv5zs79256iv2w6pid3fdg6yjv86n4fc7qzh9lgkxf5"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; - cellxgenedp = derive2 { name="cellxgenedp"; version="1.2.2"; sha256="03n39f51vdxylb30qr658hvx5av1b72nh8lnvn2bvvmwjd5ym3pp"; depends=[curl dplyr DT httr jsonlite rjsoncons shiny]; }; - censcyt = derive2 { name="censcyt"; version="1.6.1"; sha256="19qw588iwnl65nk49vnddi4jgag8a7x5hafwg2p1q37zx8y2hyyc"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; - cfDNAPro = derive2 { name="cfDNAPro"; version="1.4.0"; sha256="0441gyjfbi35444hng16zwjmyj74yfnq6m4l1wlcz8bpss57axkj"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr plyranges quantmod rlang Rsamtools stringr tibble]; }; - cghMCR = derive2 { name="cghMCR"; version="1.56.0"; sha256="1c1h987c61camgz8wjlfg7jlkvfgz3xxkjflrnn97dx8kqzd20ll"; depends=[BiocGenerics CNTools DNAcopy limma]; }; - chimeraviz = derive2 { name="chimeraviz"; version="1.24.0"; sha256="05yg31s2jqdpk8rc1jkb7ah6hws4m11jz5chg5mmxadq78qxngzp"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; - chipenrich = derive2 { name="chipenrich"; version="2.22.0"; sha256="02cy0lk2gllrizmk8fwnzk07k2kd4ha3xiynqvp9zgg0hr6wjyd3"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; - chipseq = derive2 { name="chipseq"; version="1.48.0"; sha256="1gmspbf5bmlqgbq280lnh4m9bmhzv6d0aj15dmggizsgb9d34vp5"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; - chopsticks = derive2 { name="chopsticks"; version="1.64.0"; sha256="1kc9a0ir7wz338c5y0lrrn74ik3i4fnh2m3ag5z2kx2xaxp4w90i"; depends=[survival]; }; - chromDraw = derive2 { name="chromDraw"; version="2.28.0"; sha256="0lc782v1m5rm6a0mr8fzhvnv9dw5z3q1rdq6g4yd8vv70579g0ir"; depends=[GenomicRanges Rcpp]; }; - chromPlot = derive2 { name="chromPlot"; version="1.26.0"; sha256="0s9x125mnfxsznbsyylgnax4529zvqdqszmgghgin213dx6jhfcm"; depends=[biomaRt GenomicRanges]; }; - chromVAR = derive2 { name="chromVAR"; version="1.20.2"; sha256="034in81lsdxa8j1na2zymck2y67235qprin8hak3dwa7lwzbm12z"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; - chromstaR = derive2 { name="chromstaR"; version="1.24.0"; sha256="17p22vsmb9h8ap0f2rzyg2r71srj3sxiapzyaz1csad2vfjxfi2r"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; - chromswitch = derive2 { name="chromswitch"; version="1.20.0"; sha256="0ch4jcyr4f130d6cmqqkcvnwq3xfisnns3266m3sf62ng4w1akq5"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; - cicero = derive2 { name="cicero"; version="1.16.2"; sha256="1gf359x6lvm3kc4mlsh7vxf8lmvhp080fi0cksvb4mcypafp67cv"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; - circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.12.2"; sha256="1i954hn7xyajpkg4fks04jd86flcmy2326nzpmxgy8h69jkzdc8q"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; - cisPath = derive2 { name="cisPath"; version="1.38.0"; sha256="0g3sl12hrh9asghm3ylz1l1v4hlcrsz47jpihqgkh829w0dz67rf"; depends=[]; }; - cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.36.0"; sha256="0bklip44ls8i8baq8cqh4wm5y4jxn0dyg035iszm209qgkxk8n17"; depends=[Biostrings BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges S4Vectors seqinr stringr]; }; - cleaver = derive2 { name="cleaver"; version="1.36.0"; sha256="0pmgnw807wn22zxz3z3f2gfjqfqi555858anhp125n2hf8pj6k16"; depends=[Biostrings IRanges S4Vectors]; }; - cliProfiler = derive2 { name="cliProfiler"; version="1.4.0"; sha256="1m7iwmhwlf9xmbmjnlgrxdd5fhawx76sz5lskrphskj0g2xasajc"; depends=[Biostrings BSgenome dplyr GenomicRanges ggplot2 rtracklayer S4Vectors]; }; - clippda = derive2 { name="clippda"; version="1.48.0"; sha256="16wcnc0pnxj50bzwlkfsh56g0cdagfk2yjvaz5yqsrh4p609l0y3"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; - clipper = derive2 { name="clipper"; version="1.38.0"; sha256="0isjvpndqgn615vw75kzhy3nr34q18w096y5s3536y8zrdj0ibag"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; - cliqueMS = derive2 { name="cliqueMS"; version="1.12.2"; sha256="13v6js8j4pzslg9j3y28rrc8zfzwzn2lhn4wq2n3qz0lqaf9856z"; depends=[BH igraph matrixStats MSnbase qlcMatrix Rcpp RcppArmadillo xcms]; }; - clst = derive2 { name="clst"; version="1.46.0"; sha256="0ff9mp78jslqw7b240h84s4n4vii5ga2bam9416fzgs0q8pz1whg"; depends=[lattice ROC]; }; - clstutils = derive2 { name="clstutils"; version="1.46.0"; sha256="02x8z1z0h4j6qrv4pyskfbkylzgnzhfyvb31d3jd6gyarazadzrs"; depends=[ape clst lattice rjson RSQLite]; }; - clustComp = derive2 { name="clustComp"; version="1.26.0"; sha256="0zpyxy7zba8j8zx3zr3ph4xvn6q6jp8lv3x99760aw98ccjm6l3h"; depends=[sm]; }; - clusterExperiment = derive2 { name="clusterExperiment"; version="2.18.2"; sha256="03flqixy6flaqynpaf3nz42kwf71v53wxs5vywj3bqmninzywmbk"; depends=[ape BiocGenerics BiocSingular cluster DelayedArray edgeR HDF5Array howmany kernlab limma locfdr Matrix matrixStats mbkmeans NMF phylobase pracma RColorBrewer Rcpp S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; - clusterProfiler = derive2 { name="clusterProfiler"; version="4.6.2"; sha256="017wqd1nwcrhbpzvhcqc3if0n084dspq7y3fbc5dnik6yi04q0dg"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim gson magrittr plyr qvalue rlang tidyr yulab_utils]; }; - clusterSeq = derive2 { name="clusterSeq"; version="1.22.0"; sha256="05ap73pyax6nfb474d2xda5279c8z84pvkshzxwp1q3rb8fn4s6d"; depends=[baySeq BiocGenerics BiocParallel]; }; - clusterStab = derive2 { name="clusterStab"; version="1.70.0"; sha256="0kmmb33mq0rgzp83rih8hb7gv51djfn6iak0b2b9806jx3c1cw5y"; depends=[Biobase]; }; - clustifyr = derive2 { name="clustifyr"; version="1.10.0"; sha256="1y7ndmc6mjs841a6nk4b4njpkjaanardpkh0bzacfj288znpx7dg"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; - cmapR = derive2 { name="cmapR"; version="1.10.0"; sha256="1cgjwnn7w944id42qhnh5xw45hjijl4w26j50fcdiwwl18fdpdxf"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; }; - cn_farms = derive2 { name="cn.farms"; version="1.46.0"; sha256="1l1y1974bibqymibz7smmn8rgn27y3wh5kqkbshh1rd6b9xml0zj"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; - cn_mops = derive2 { name="cn.mops"; version="1.44.0"; sha256="1nvh23v63fj5l53bdipkqh1nvr307n4hsr2qi5ba4qs2hpf94wcz"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - cnvGSA = derive2 { name="cnvGSA"; version="1.42.0"; sha256="11xlk9ljwn5zzjawf3gj7715rxxsh67gxrn2agrfzdhxickf8x4k"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; - coGPS = derive2 { name="coGPS"; version="1.42.0"; sha256="12dxim7dd6nh3pgyn5yg4xkmvv5wpxy202qnarliv2smgs5f9w30"; depends=[]; }; - coMET = derive2 { name="coMET"; version="1.30.0"; sha256="0i9r9gs7s8ami9hpfkmw4hshgly6107ib91n7l7l8dkpljndicfa"; depends=[biomaRt corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; - coMethDMR = derive2 { name="coMethDMR"; version="1.2.0"; sha256="1d602pg9aaqvjwpdjnn67fb98n6sy557lkqfg8rybybjzx705g4h"; depends=[AnnotationHub BiocParallel bumphunter ExperimentHub GenomicRanges IRanges lmerTest]; }; - coRdon = derive2 { name="coRdon"; version="1.16.0"; sha256="095vk28v1a62cqz0vavvbvjij3azr5sr2n1px31zpx91m9jy616v"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; - codelink = derive2 { name="codelink"; version="1.66.0"; sha256="0w3ddmz22dw7nvgl1wxahlqjw2qsjyh0p001mq5kyqsk0b7zdx0y"; depends=[annotate Biobase BiocGenerics limma]; }; - coexnet = derive2 { name="coexnet"; version="1.19.1"; sha256="0zw8a8pqmajqnv5n6i7fn7krwax81sd4c6wqm4zr61fy2blqzv3h"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; }; - cogena = derive2 { name="cogena"; version="1.32.0"; sha256="0hxxk7ijrbji40v5y4y5r6zv6j6z1vn5dwxfxqz4x91igmv8p3qc"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; - cogeqc = derive2 { name="cogeqc"; version="1.2.1"; sha256="0icfi1jrpn21k2pww0pix1v7xmjnb16ylh5r2qcp8xgd1wcyna7a"; depends=[Biostrings ggplot2 ggtree igraph patchwork reshape2]; }; - cola = derive2 { name="cola"; version="2.4.0"; sha256="0hwkcpbxnh3n4iik492dsxzh1kimg6cwsdlgdjqrzid61rbg5zax"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; - comapr = derive2 { name="comapr"; version="1.2.0"; sha256="1b2727fr7fczcy420rg64xhls63pyw7lqzcv8rjcbazjl6673rkb"; depends=[BiocParallel circlize dplyr foreach GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz IRanges Matrix plotly plyr RColorBrewer reshape2 rlang S4Vectors scales SummarizedExperiment tidyr]; }; - combi = derive2 { name="combi"; version="1.10.0"; sha256="1522np734gbk4g6m64832f32fsq9fsv0gjgk0qf3axny8l7g3pxy"; depends=[alabama BB Biobase cobs DBI ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; - compEpiTools = derive2 { name="compEpiTools"; version="1.32.0"; sha256="0v5rwcahqz77dcg57agllbvrnfk4cfngzgzib2c2xkjdvyz8bd72"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; - compartmap = derive2 { name="compartmap"; version="1.16.0"; sha256="0vm5ip7gxs2s0lij3qf3fjgfd4b08f5c8visq9dhjx87bc9dgbcz"; depends=[BiocSingular DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array Matrix RaggedExperiment reshape2 RMTstat rtracklayer scales SummarizedExperiment]; }; - compcodeR = derive2 { name="compcodeR"; version="1.34.0"; sha256="1cavvgi6gfd06krsabd5amvjlyclnc5lzpy1jl37a5ssppfmymzr"; depends=[ape caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS matrixStats modeest phylolm ROCR sm stringr vioplot]; }; - conclus = derive2 { name="conclus"; version="1.5.0"; sha256="09rk73sxqxsy0zq07n67jxqbzb1rlxlj0phg6987szdjwxmag6jc"; depends=[AnnotationDbi Biobase BiocFileCache biomaRt clusterProfiler dbscan doParallel dplyr factoextra foreach fpc GEOquery ggplot2 gridExtra org_Hs_eg_db org_Mm_eg_db pheatmap rlang Rtsne scales scater scran SingleCellExperiment stringr SummarizedExperiment]; }; - condiments = derive2 { name="condiments"; version="1.6.0"; sha256="0wf1nrwp4inzwnw29s7ig2601hi3ppwq50vp1vfd65krfkj5ww3w"; depends=[BiocParallel distinct dplyr Ecume igraph magrittr matrixStats mgcv pbapply RANN SingleCellExperiment slingshot SummarizedExperiment TrajectoryUtils]; }; - consICA = derive2 { name="consICA"; version="1.0.0"; sha256="0rfy6v601sxdpsjkli21927w56jjw0dcav1vnp2sibbb7r2ymrwc"; depends=[BiocParallel fastICA GO_db graph org_Hs_eg_db pheatmap sm SummarizedExperiment survival topGO]; }; - consensus = derive2 { name="consensus"; version="1.16.0"; sha256="180klz7minp2i4v50nkk2svjkhsl5mbv025d2a0h6klmlsmnvyi0"; depends=[gplots matrixStats RColorBrewer]; }; - consensusDE = derive2 { name="consensusDE"; version="1.16.0"; sha256="0v093plal029m3gvn6ng7i130c6dflwjvjvqipfq37cchkqpibf4"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; - consensusOV = derive2 { name="consensusOV"; version="1.20.0"; sha256="0lixy4qg618vqv1i9mjz0v12rnzlakpdbv9wjkbxfc8l5yybqpmh"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; - consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.26.0"; sha256="1cn556l4s498sa5immf310ljf7vfwd1vkxk16nsjcf29m91823ms"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; - contiBAIT = derive2 { name="contiBAIT"; version="1.26.0"; sha256="0yw06870jvgzyangyf8sz5sa07zmb7iq1vhlw96gq2jlxzq4s32h"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; - conumee = derive2 { name="conumee"; version="1.32.0"; sha256="0w4g0ybcxzbbnzdywm0n9ycmbb11jxjgr7fiwmb60483p25hx6z2"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; - convert = derive2 { name="convert"; version="1.74.0"; sha256="14cnr2b8ijnyk8syz211pnr5246hnsj0qia6b07gz372llv0mk2w"; depends=[Biobase limma marray]; }; - copa = derive2 { name="copa"; version="1.66.0"; sha256="1jznqf2n8c2w9d36xp2qwbyfap7kyp4qs3d8bpb8s75hi9yzr04z"; depends=[Biobase]; }; - copynumber = derive2 { name="copynumber"; version="1.38.0"; sha256="1a664bllaq9pbb5cpd01j919qirylvnm8qd49lwlz89jvqjdri19"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; - corral = derive2 { name="corral"; version="1.8.0"; sha256="1xzajapql5dx4chbbcz47qgfm21k82fsd3d0q8626rpgi8lfc5wl"; depends=[ggplot2 ggthemes gridExtra irlba Matrix MultiAssayExperiment pals reshape2 SingleCellExperiment SummarizedExperiment transport]; }; - coseq = derive2 { name="coseq"; version="1.22.0"; sha256="1fw10gqzxjn8j8109ahcz8a6yyfpxlifwfmj78m5q72nba0vi4aq"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; - cosmiq = derive2 { name="cosmiq"; version="1.32.0"; sha256="0yy6q8b4il7khwar9rbjn9g2jb10ck4lm6znh2lajblsr3zfgl9w"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; - cosmosR = derive2 { name="cosmosR"; version="1.6.0"; sha256="17mjjm3mri34m1ksck8dj7bf8ym10kzinq6zn8plns15zljy4cxp"; depends=[CARNIVAL dorothea dplyr GSEABase igraph progress purrr rlang stringr visNetwork]; }; - countsimQC = derive2 { name="countsimQC"; version="1.16.1"; sha256="08x6zcmak85x9n4ycxy7y2zkh7ljcnv0q4qgy5f48mjhiha6yghz"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 ragg randtests rmarkdown SummarizedExperiment tidyr]; }; - covEB = derive2 { name="covEB"; version="1.24.0"; sha256="19km0q0nmgfvsz5w8k74f735j9sa8s90nvz77lv8afjq04spznxy"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; - covRNA = derive2 { name="covRNA"; version="1.24.0"; sha256="1p3kl3qwriab2c6f8qxl65ssys759fwvcp7jvsc3bbpbkldirz59"; depends=[ade4 Biobase genefilter]; }; - cpvSNP = derive2 { name="cpvSNP"; version="1.30.0"; sha256="0hkrf1488jj8wzzbsxsc71winrmckcql449jawvxsz9ps92r3314"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; - cqn = derive2 { name="cqn"; version="1.44.0"; sha256="1y8g4dx86s95w0h1y98r2hfyphzw648jz5lhrs6xbrnhz6ficzvn"; depends=[mclust nor1mix preprocessCore quantreg]; }; - crisprBase = derive2 { name="crisprBase"; version="1.2.0"; sha256="1ym9hm6q124mzjf7a0fky4qray8ylkjga17lbfr083prnb9jkgi8"; depends=[BiocGenerics Biostrings GenomicRanges IRanges S4Vectors stringr]; }; - crisprBowtie = derive2 { name="crisprBowtie"; version="1.2.0"; sha256="1gzil30hnbrv95y4pr8mzvm5xq8xn19c8lh4kk93480ki8j5ll5s"; depends=[BiocGenerics Biostrings BSgenome crisprBase GenomeInfoDb GenomicRanges IRanges Rbowtie readr stringr]; }; - crisprBwa = derive2 { name="crisprBwa"; version="1.2.0"; sha256="1qyi4vpmharkv8h94rqnm85bg56ks16ba5pcbrcmiwm1mr5v33lp"; depends=[BiocGenerics BSgenome crisprBase GenomeInfoDb Rbwa readr stringr]; }; - crisprDesign = derive2 { name="crisprDesign"; version="1.0.0"; sha256="15icrrg5ha16g3pbbsxck8zl7x8j433jif7l4l6vf3z67x9pyz75"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome crisprBase crisprBowtie crisprScore GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix MatrixGenerics rtracklayer S4Vectors VariantAnnotation]; }; - crisprScore = derive2 { name="crisprScore"; version="1.2.0"; sha256="01zz9hffns2papwczckfhcq7nq832l0hc621k1hx5r2mzrdzsa8g"; depends=[basilisk basilisk_utils BiocGenerics Biostrings crisprScoreData IRanges randomForest reticulate stringr XVector]; }; - crisprVerse = derive2 { name="crisprVerse"; version="1.0.0"; sha256="0l1iv9kwwwncav9y2zpkfk937r9bwni6k2ca0c3yafqwpyljn94f"; depends=[BiocManager cli crisprBase crisprBowtie crisprDesign crisprScore crisprViz rlang]; }; - crisprViz = derive2 { name="crisprViz"; version="1.0.0"; sha256="1f4iv2iy751dvik2awwlk46fqnfgqwn9r2kv2iypiyysk1bgwq8d"; depends=[BiocGenerics Biostrings BSgenome crisprBase crisprDesign GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges S4Vectors]; }; - crisprseekplus = derive2 { name="crisprseekplus"; version="1.24.0"; sha256="1hmyla7qppbd81jans5kxd6z11vrqhgza7gvibyih4czria5sb05"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; - crlmm = derive2 { name="crlmm"; version="1.56.0"; sha256="0nhvwdzl71z3c01vlazrarbrz77c8rf5qmsfc9w9fr054dc9r71i"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; }; - crossmeta = derive2 { name="crossmeta"; version="1.24.0"; sha256="0b8l44j9jnn1d79m718cyrggfhy5bq59rws2fjvcal0p8mlsl2n8"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager data_table DBI DT edgeR fdrtool GEOquery limma matrixStats metaMA miniUI oligo RCurl reader readxl RSQLite shiny shinyBS shinyjs shinypanel shinyWidgets stringr sva tibble XML]; }; - csaw = derive2 { name="csaw"; version="1.32.0"; sha256="1nv8mch67mhzwj793w2lcf98x6iz7kin7xp6ipn6p06a4fxzglz7"; depends=[BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicRanges IRanges limma Matrix metapod Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; - csdR = derive2 { name="csdR"; version="1.4.0"; sha256="1xyskzy5khbsn1q0fa1824asm2ib8jdaz324dqr6vg7kngqn8sf3"; depends=[glue matrixStats Rcpp RhpcBLASctl WGCNA]; }; - ctc = derive2 { name="ctc"; version="1.72.0"; sha256="098a65fk9la639sqihhsghhgb3hyzv35j6akph908zwq5grsv0c5"; depends=[amap]; }; - ctsGE = derive2 { name="ctsGE"; version="1.24.0"; sha256="18rnpxm55w4gr78a64i20yg7jz04cyjr4rgd88czkkwhkj73q465"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; - cummeRbund = derive2 { name="cummeRbund"; version="2.40.0"; sha256="1fzkhnlgv4zd0slr12d5aichyxsca86p82fyjymiz7f5fqdvqmd9"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; - customCMPdb = derive2 { name="customCMPdb"; version="1.8.0"; sha256="1jqr80qgnhvsxaagpg7ww115wq0m8jh8sf5pg09xmwh3909y48cr"; depends=[AnnotationHub BiocFileCache ChemmineR rappdirs RSQLite XML]; }; - customProDB = derive2 { name="customProDB"; version="1.38.0"; sha256="0qc3as0cmhjw9gv5akb35x8vq8ksn14ycs8yajfaczg8g7216x1i"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; - cyanoFilter = derive2 { name="cyanoFilter"; version="1.6.0"; sha256="0c440ryv56r7ck2l9i93nzaj5wkmnahhkig3l8nvbq0iq22qccir"; depends=[Biobase cytometree flowClust flowCore flowDensity GGally ggplot2 mrfDepth]; }; - cycle = derive2 { name="cycle"; version="1.52.0"; sha256="1lahh78i8qv7xfm0k2qkh4chpjl9jp51z4n9q1xks0y5v2934mvs"; depends=[Biobase Mfuzz]; }; - cydar = derive2 { name="cydar"; version="1.22.0"; sha256="02ci2kl4pq47n0bsd19514g8f098249lqldq2ywhrrql0wibggh3"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; - cytoKernel = derive2 { name="cytoKernel"; version="1.4.0"; sha256="1mq3b6fjns0q5pr2vc37lnviy2jq02lsx0bhpc43yna5gv45qv6p"; depends=[ashr BiocParallel circlize ComplexHeatmap data_table dplyr magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; - cytoMEM = derive2 { name="cytoMEM"; version="1.2.0"; sha256="1pz4sfp43d85xd8dkbdpr9kzl6w6g7lm98zqf3cmiz4mnb7rzjwp"; depends=[flowCore gplots matrixStats]; }; - cytolib = derive2 { name="cytolib"; version="2.10.1"; sha256="0rgqlqasil75b03c8c4nyg71ybysrsbqb0bwk6hbnaw8rljxdmi5"; depends=[BH Rhdf5lib RProtoBufLib]; }; - cytomapper = derive2 { name="cytomapper"; version="1.10.1"; sha256="0damlwxjmixrj2civn8wq463l697yh4vy42jdxb2nszmn9m3flkw"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats nnls raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SpatialExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; - dStruct = derive2 { name="dStruct"; version="1.4.0"; sha256="0f83w1fgjrlp91ibcb3xxqvbi27rj3a7fxlg5bwlzaq8lg1yrwdn"; depends=[ggplot2 IRanges purrr reshape2 rlang S4Vectors zoo]; }; - daMA = derive2 { name="daMA"; version="1.70.0"; sha256="062nxfry9w674ja3q9zs4df2hvf4wws9jdqpy84g6nb0309vbhqf"; depends=[MASS]; }; - dada2 = derive2 { name="dada2"; version="1.26.0"; sha256="1cdfq4qa4kkfkqnkyxyr109hbvj5li396rm3p2b11qm2pxmfd7kc"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; - dagLogo = derive2 { name="dagLogo"; version="1.36.0"; sha256="0kr61rpw54gjp16nimpj42anr5xn77lnz4bn1dr4d42z7l4ar0zg"; depends=[BiocGenerics biomaRt Biostrings httr motifStack pheatmap UniProt_ws]; }; - dasper = derive2 { name="dasper"; version="1.7.0"; sha256="0r7pv3cv48w3kx89x59yjcfxa9p7sc3aac09vm3g2xm9zhfjny81"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyranges readr reticulate rtracklayer S4Vectors stringr SummarizedExperiment tidyr]; }; - dcGSA = derive2 { name="dcGSA"; version="1.26.0"; sha256="05vs7lbdgh1sh7l30ypm86gs2p9a8485qcpdl27y3rqsn4vb97al"; depends=[BiocParallel Matrix]; }; - dcanr = derive2 { name="dcanr"; version="1.14.0"; sha256="0vy6ahav3p8vxj3i9sixdpjz40lgvsp5cz9y62xx1kg641406xpy"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; - dce = derive2 { name="dce"; version="1.6.0"; sha256="1r3dwp0s4hsfzpqa8k0mjffgay5hvz9snsb2ym21n2654k1bg071"; depends=[assertthat dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger magrittr MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang shadowtext tidygraph tidyverse]; }; - ddCt = derive2 { name="ddCt"; version="1.54.0"; sha256="1q98qqxh13ibfxc9cclf3cqawax2qbysg193p0bdh878iyrsvc1y"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; - ddPCRclust = derive2 { name="ddPCRclust"; version="1.18.0"; sha256="0b1pp1njpm8c48kagy7c1qa82bc8wsfxysgjljh4j7fi4alhcxy2"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; - dearseq = derive2 { name="dearseq"; version="1.10.0"; sha256="1f9hz4jp862jm1grf4qzdvnzp17ri0n1rhfafgkc1j73z6whw1b0"; depends=[CompQuadForm dplyr ggplot2 KernSmooth magrittr matrixStats patchwork pbapply reshape2 rlang scattermore statmod survey tibble viridisLite]; }; - debCAM = derive2 { name="debCAM"; version="1.16.0"; sha256="09dm861adbxdy3ncfdxq46wjr4hpn56c66n64xm9gwzkzsrxyc2a"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; - debrowser = derive2 { name="debrowser"; version="1.26.3"; sha256="0vs7c6241wgpcisxdxg5kdsa4rkwniq0mxz34gn7kmn252kapd3j"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; - deco = derive2 { name="deco"; version="1.13.0"; sha256="0d4abif3v62cbas6hl7pfw8q8jihh7nsra76k9cm6kz54qw4fbnw"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; }; - decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.14.0"; sha256="0agvmgwyk458lhhhspd8243n4897f0q7jf9yqhwsl5wi8011vmqd"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - decontam = derive2 { name="decontam"; version="1.18.0"; sha256="0bk7ia2flnxwa99b8mf3xdvap3xqa4pvpsrgbnyapxbaqxr5zf82"; depends=[ggplot2 reshape2]; }; - deconvR = derive2 { name="deconvR"; version="1.4.3"; sha256="1jz7q4rv3m85bcvarjhqsyc2330fynb0wr5ajd2qffznczk846xb"; depends=[assertthat BiocGenerics data_table dplyr e1071 foreach GenomicRanges IRanges magrittr MASS matrixStats methylKit minfi nnls quadprog rsq S4Vectors tidyr]; }; - decoupleR = derive2 { name="decoupleR"; version="2.4.0"; sha256="1872pi2v9gymdpqdhab10ash4b2w8sbk1p635lf0p6s4679syhdi"; depends=[broom dplyr magrittr Matrix purrr rlang stringr tibble tidyr tidyselect withr]; }; - deepSNV = derive2 { name="deepSNV"; version="1.44.0"; sha256="051xcg9lx8plbfhiacrv1wsxfac0qqspysq960ppibkf4m8crk81"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; - deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.12.0"; sha256="1ygsnhrqsr1pa61s7pq7wmyk1i4hcxyylpinnhbav04zjs8rhg1b"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment tictoc]; }; - deltaGseg = derive2 { name="deltaGseg"; version="1.38.0"; sha256="1m4jdps2x3qx8mal4ryjffi0ph2kzkpqspfz4dq08mn46qn8nxfi"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; - demuxmix = derive2 { name="demuxmix"; version="1.0.0"; sha256="0glqwysbz5vx272s38g4zk0d4zzdnhlsc57yv52g2bxi1vij70an"; depends=[ggplot2 gridExtra MASS Matrix]; }; - densvis = derive2 { name="densvis"; version="1.8.3"; sha256="03x31dcd6dpb98fg0486xpizc0sk6p9a6b3sfpd6ls226gfj8f68"; depends=[assertthat basilisk irlba Rcpp reticulate]; }; - derfinder = derive2 { name="derfinder"; version="1.32.0"; sha256="0v9h3hyfvk72r0d0fx2avmm65dvzb2i06vdx1c3jld8b676ss87r"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; - derfinderHelper = derive2 { name="derfinderHelper"; version="1.32.0"; sha256="118rjmqy53viczdwj70kaszkpg2r2zbq60k49jg7fqb81prdwy04"; depends=[IRanges Matrix S4Vectors]; }; - derfinderPlot = derive2 { name="derfinderPlot"; version="1.32.0"; sha256="1pdfjppzg3l2mh7d29gn22hgkm48bznpalks2jd89wajxkhb6cd2"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; - destiny = derive2 { name="destiny"; version="3.12.0"; sha256="0rgd723azjrdxv441k96vircqb18w31q0ljhksbdrvcp9qb85r6i"; depends=[Biobase BiocGenerics ggplot_multistats ggplot2 ggthemes irlba knn_covertree Matrix pcaMethods proxy Rcpp RcppEigen RcppHNSW RSpectra scales scatterplot3d SingleCellExperiment smoother SummarizedExperiment tidyr tidyselect VIM]; }; - diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.80.0"; sha256="0k0zd15jlffphg6m3c5jfnn5iilmb1g9sdgjzar4m6yyfzl1m51w"; depends=[minpack_lm]; }; - diffHic = derive2 { name="diffHic"; version="1.30.0"; sha256="1rffxh74bfzzi6dm90b7q0hv50pzb1mrmdicz1jrnksjk5hphfap"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; - diffUTR = derive2 { name="diffUTR"; version="1.6.0"; sha256="104pfcrnkya4pra7ch2dlb2218f1vkp4xk3l8xn8k726kil56z4s"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; }; - diffcoexp = derive2 { name="diffcoexp"; version="1.18.0"; sha256="1p7ksn9ly9if8yf4p9x6kya1vh5z68fjgv7acd417k6c1pznzcqf"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; - diffcyt = derive2 { name="diffcyt"; version="1.18.0"; sha256="10xhvksnnn4m1hly16fwmbr28xgym6a9zkqj8y476jph4wpnhc2s"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; - diffuStats = derive2 { name="diffuStats"; version="1.18.0"; sha256="1p8v2358kkdj50cbw5vvwkcc1dv470ifcggb5cmq2cqxx2ipf3z5"; depends=[checkmate expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; - diggit = derive2 { name="diggit"; version="1.30.0"; sha256="0w3m7azy7r2bf9z8sdf7lz7jhnzg9hks4zxrjn30yq6hh8qs53gs"; depends=[Biobase ks viper]; }; - dir_expiry = derive2 { name="dir.expiry"; version="1.6.0"; sha256="1ix31jcfi3dg12pa0sz4k4izwc9rsydy6krl7f949lkam2g7s5f8"; depends=[filelock]; }; - discordant = derive2 { name="discordant"; version="1.22.0"; sha256="1zhnfah6md93d7ksq94xq0462vmcs5gfk1fcs18wwqw3bq967pgb"; depends=[Biobase biwt dplyr gtools MASS Rcpp]; }; - distinct = derive2 { name="distinct"; version="1.10.2"; sha256="1basncp2b8srv926rm4c405c0a0djp9lh83x9ja9xiyg4xh3vbv9"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo Rfast scater SingleCellExperiment SummarizedExperiment]; }; - dittoSeq = derive2 { name="dittoSeq"; version="1.10.0"; sha256="0sxpwg2cjw70pzdxbdw68nic521w65ryn83mj0pb2m1ncpimin4b"; depends=[colorspace cowplot ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - divergence = derive2 { name="divergence"; version="1.14.0"; sha256="1khxmngdqsvn77hfiyz732q4z268qwk0r9ydmipz25lnddb25p7m"; depends=[SummarizedExperiment]; }; - dks = derive2 { name="dks"; version="1.44.0"; sha256="1vg6xlw5ia6r1xycd5hrh6s2nxrkrgi34dsd1kfzhkf11d40ydfh"; depends=[cubature]; }; - dmrseq = derive2 { name="dmrseq"; version="1.18.1"; sha256="0djd2r0xzjcyw496wdw2gwzk4wjf3jp639b198x4pc0g0mmgw245"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; - doppelgangR = derive2 { name="doppelgangR"; version="1.26.0"; sha256="1qfgfvxj44zyqfcj57lphrqgh7yb3lv807bl9xhg7k2gc3rmy5n1"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; - doseR = derive2 { name="doseR"; version="1.14.0"; sha256="0cpjy8whi7nhpyhyz8k2g70l7rhfpg2xcgclxdasbrj695qy79f0"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; }; - dpeak = derive2 { name="dpeak"; version="1.10.0"; sha256="1cnbvi8x3zjfvbsc71gz8pk7x7fglydhnc8msp6c10sd06blpibs"; depends=[BSgenome IRanges MASS Rcpp]; }; - drawProteins = derive2 { name="drawProteins"; version="1.18.0"; sha256="1gsa1gkpawg5w869syd1anf9j1xz3vd9fxhs170x0jmplvnykgqc"; depends=[dplyr ggplot2 httr readr tidyr]; }; - drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.6.0"; sha256="04y6kh1nw8rlinv33pyavwrvz900283kigjakv5az95fwchc7zap"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; }; - dupRadar = derive2 { name="dupRadar"; version="1.28.0"; sha256="107m3y9d123cvh5cxlpd6xibi569jzpj4whn8rsbrmgbrj6qghcr"; depends=[KernSmooth Rsubread]; }; - dyebias = derive2 { name="dyebias"; version="1.58.0"; sha256="1jjy1z4f5yg63ds43nrf9gdsq7vsjblfnqc6c12q63l4qgxvbsw5"; depends=[Biobase marray]; }; - easier = derive2 { name="easier"; version="1.4.0"; sha256="1fdfn9bs8676l87jhbpm24c1gz6i272syfp00qwzj2491vibnndp"; depends=[BiocParallel coin DESeq2 dorothea dplyr easierData ggplot2 ggpubr ggrepel matrixStats progeny quantiseqr reshape2 rlang ROCR rstatix]; }; - easyRNASeq = derive2 { name="easyRNASeq"; version="2.34.0"; sha256="0851zpqhks96l0bqbay15nglycg3l354av77crmbdjgii5573f53"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; - easyreporting = derive2 { name="easyreporting"; version="1.10.0"; sha256="1aaymshvz3pcpqzjv57f55w8jzvm905w1v7q6kfp4phd79zdvba8"; depends=[rlang rmarkdown shiny]; }; - ecolitk = derive2 { name="ecolitk"; version="1.70.0"; sha256="0xvlqfb061a53vqfalz1byrrmc24mdqasm3img1i35izqvxz90bi"; depends=[Biobase]; }; - edge = derive2 { name="edge"; version="2.30.0"; sha256="0sqkzmfxnh4zf2lijaizdv4l07qa0fj75axsw76zzsi1pr91yrbn"; depends=[Biobase MASS qvalue snm sva]; }; - edgeR = derive2 { name="edgeR"; version="3.40.2"; sha256="0ds34b135qd63dh3cxkp8b28270m50bn1njwr49b8svgcgzz9x09"; depends=[limma locfit Rcpp]; }; - eds = derive2 { name="eds"; version="1.0.0"; sha256="1jfv281pwr3ibr9rnnf41jj1sfj25k0yaln1h175flxkvvhnisba"; depends=[Matrix Rcpp]; }; - eegc = derive2 { name="eegc"; version="1.24.0"; sha256="1rla8x3w4r7da79kxaijgz804ma3s71xs7hm4xj5ccrvg4rvsr61"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; - eiR = derive2 { name="eiR"; version="1.38.0"; sha256="0f9s20b219scx6al1rb8hzq79d40amvc7rg31kvdknfadqsjv5v1"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; }; - eisaR = derive2 { name="eisaR"; version="1.10.0"; sha256="0ilm97h7rwiz7za9n4dwsvk1r7q0fbb5dbb1z13dwal7c367c2a7"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; - enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.4.2"; sha256="0xsygfrmms2rzgzs3hqs99ym2ssm07c2cxm9xg6643wq3mxivdny"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr Rcpp rtracklayer S4Vectors]; }; - enrichTF = derive2 { name="enrichTF"; version="1.14.0"; sha256="17jzm9x86rdqn59gr79kl9af9l0scaz20xnv7b273xpscwrxi139"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; - enrichplot = derive2 { name="enrichplot"; version="1.18.3"; sha256="0nzcr23m58z3h0n0frxf26z14j7ilcl4fjy7rqm7f2i1wyld70zl"; depends=[aplot DOSE ggnewscale ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 rlang scatterpie shadowtext yulab_utils]; }; - ensemblVEP = derive2 { name="ensemblVEP"; version="1.40.0"; sha256="1g7574d813p43qcl82vqw8vd3rn485wi3ckb8b6bkjhw09wikb9r"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; - ensembldb = derive2 { name="ensembldb"; version="2.22.0"; sha256="1v1in3imqbwak3v9w99l6hq8kihai5xvpgxvg7imna7jn1w8kmji"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; - epiNEM = derive2 { name="epiNEM"; version="1.22.0"; sha256="1j41l2qm83cdhm56bnzx0wp31yph7shfxr0kav7wc6dqxkjjhjjf"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; - epialleleR = derive2 { name="epialleleR"; version="1.6.1"; sha256="0b416ibi9y81h7xycj1sxmq344ami3a5mcqac3rzbn3l380kl5ms"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; }; - epidecodeR = derive2 { name="epidecodeR"; version="1.6.0"; sha256="0qfb912xsyp4cvblhpwpa22iziwqz39hfnf8x68d23pnfwnb1v74"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; - epigenomix = derive2 { name="epigenomix"; version="1.38.0"; sha256="0vdrnn2qmcy3znz534m5iynvzw208whcyypw7mhdqvrfzkzb4m4a"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; - epigraHMM = derive2 { name="epigraHMM"; version="1.6.4"; sha256="137qs09idwrc40379dvl3gmy2dcfhmp2x09rzzslkzkh0nj4ikcn"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; - epihet = derive2 { name="epihet"; version="1.13.0"; sha256="1p5sgb438yj6h0fv0v17dhz1pl32vai5zcbmgpgagrd5829a6a7r"; depends=[data_table doParallel foreach GenomicRanges ggplot2 igraph IRanges pheatmap qvalue ReactomePA Rtsne S4Vectors WGCNA]; }; - epimutacions = derive2 { name="epimutacions"; version="1.2.0"; sha256="1anpx122fcrwldkv5bz5c1cmf6a7y1ai8pc5wjpch7c0nim4a8xg"; depends=[AnnotationDbi AnnotationHub BiocGenerics BiocParallel biomaRt bumphunter ensembldb epimutacionsData ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra Gviz Homo_sapiens IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges isotree matrixStats minfi purrr reshape2 robustbase rtracklayer S4Vectors SummarizedExperiment tibble TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - epistack = derive2 { name="epistack"; version="1.4.0"; sha256="06z380js0hgnps8nkfrk2ay7s8fyqbndipavk5ipihbp80yzmgpx"; depends=[BiocGenerics GenomicRanges IRanges plotrix S4Vectors SummarizedExperiment viridisLite]; }; - epistasisGA = derive2 { name="epistasisGA"; version="1.0.2"; sha256="09mrj3li34l1a7q6iimxj3zhgh1g7m4nrwag4p6l55i2wznlkz63"; depends=[batchtools BiocParallel data_table ggplot2 igraph matrixStats qgraph Rcpp RcppArmadillo survival]; }; - epivizr = derive2 { name="epivizr"; version="2.28.0"; sha256="13y9wc28fkn2zvl68qf1jwxcd3kph98iyfw6p7i7c3ghsphmml56"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - epivizrChart = derive2 { name="epivizrChart"; version="1.20.0"; sha256="1yr03i5da7nwyg750ikm6m10x9w4pi34s19xszg87qh2hd15h2ll"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; - epivizrData = derive2 { name="epivizrData"; version="1.26.0"; sha256="0g68ncr2gxzb6s98aal7fb64bpbyzfya9bv6b6n0kqv6xvvm88yb"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; - epivizrServer = derive2 { name="epivizrServer"; version="1.26.0"; sha256="1db4hgnal7lrzp8b3dmsqv8z4ddw0lsgjmivl1s5dihvnmpsj1k8"; depends=[httpuv mime R6 rjson]; }; - epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.26.0"; sha256="0g5qpw9kcsrrqi86h0pz4jlz82h3czs34hpxzz0b2bnqrx44ys5m"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; - erccdashboard = derive2 { name="erccdashboard"; version="1.32.0"; sha256="12wvbikm11kyvy81gyw513q2mjh4vai0l8lwdnaazan1x1k8pgr8"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; - erma = derive2 { name="erma"; version="1.14.0"; sha256="06zxqzbzb0jrk357900gv1r2n81i49rbmrxla02f879kq2ik9cyd"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; - esATAC = derive2 { name="esATAC"; version="1.20.0"; sha256="1ndv5102aycv5swi08c9gvy66cpx2p2k18bncbl134y1c9ss86fk"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; - escape = derive2 { name="escape"; version="1.8.0"; sha256="1wb8876506m5bprzbkp6zfa3mv87qyadkffv6ph5m207ixwx502d"; depends=[BiocParallel broom data_table dplyr ggplot2 ggridges GSEABase GSVA Matrix MatrixGenerics msigdbr patchwork reshape2 rlang SingleCellExperiment stringr SummarizedExperiment UCell]; }; - esetVis = derive2 { name="esetVis"; version="1.24.0"; sha256="1vnld99li8a5391k185q0xf5fl00q0k76dk9k95b4nx2zmajs7sv"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; - eudysbiome = derive2 { name="eudysbiome"; version="1.28.0"; sha256="0q6x3nlvarhgc1fq5j4h7hxq5dcmfm0fgm3lmgz63bcbpsf60n5g"; depends=[Biostrings plyr R_utils Rsamtools]; }; - evaluomeR = derive2 { name="evaluomeR"; version="1.14.0"; sha256="0wjmm2wzqprn0v0vn90cc3b3wsa274b305p661fdpsql4714jmrq"; depends=[class cluster corrplot flexmix fpc ggdendro ggplot2 kableExtra MASS matrixStats mclust MultiAssayExperiment plotrix prabclus randomForest Rdpack reshape2 SummarizedExperiment]; }; - exomeCopy = derive2 { name="exomeCopy"; version="1.44.0"; sha256="11a95rpqzc5502s75ar703bv9hisgfx7yqdf03n0q1qh6ykil35g"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; - exomePeak2 = derive2 { name="exomePeak2"; version="1.10.0"; sha256="1j8l3q5bq3yb1889vjpk8l9qzrmg7lv38m7jb57cb9q67sflqjzs"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DESeq2 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magrittr mclust Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - extraChIPs = derive2 { name="extraChIPs"; version="1.2.4"; sha256="1jhpzw7ps8bknf3b1pjcpsf5kncm3ia7q5niygvrw3idkbszz2c2"; depends=[BiocIO BiocParallel broom ComplexUpset csaw dplyr edgeR EnrichedHeatmap forcats GenomeInfoDb GenomicInteractions GenomicRanges ggforce ggplot2 ggrepel ggside glue Gviz InteractionSet IRanges limma patchwork RColorBrewer rlang Rsamtools rtracklayer S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect vctrs VennDiagram]; }; - fCCAC = derive2 { name="fCCAC"; version="1.24.0"; sha256="1r4rdbv1xv8rwsna8w89fzd76hzspf825fxzcn475ll31gmsxsrv"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; - fCI = derive2 { name="fCI"; version="1.28.0"; sha256="1jiws5q3ppq0z0s71nhb6fs63470v2di45y0gdf7anjnpxgjcjq9"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; - fabia = derive2 { name="fabia"; version="2.44.0"; sha256="1fjysjnanjpaywcb4jk8n66mjc3ffn4jscvwqfkpjh7d757xc716"; depends=[Biobase]; }; - factDesign = derive2 { name="factDesign"; version="1.74.0"; sha256="1wimcf0xnrpfahda9lj90xqcnq76yw7swbgasrdinay37a3dv0ki"; depends=[Biobase]; }; - factR = derive2 { name="factR"; version="1.0.0"; sha256="1ql328w2g6ds74vby36h4d9c7drwby2ah82mqgkjbqw01qr6gk75"; depends=[BiocGenerics BiocParallel Biostrings crayon data_table dplyr drawProteins GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges pbapply purrr RCurl rlang rtracklayer S4Vectors stringr tibble tidyr wiggleplotr XML]; }; - famat = derive2 { name="famat"; version="1.8.0"; sha256="1l54ggmqbwj0p3zwln237pggalykmkd46jddaz85gvfhv664bvfn"; depends=[BiasedUrn clusterProfiler dplyr DT GO_db gprofiler2 KEGGREST magrittr mgcv ontologyIndex org_Hs_eg_db plotly reactome_db rWikiPathways shiny shinyBS shinydashboard stringr tidyr]; }; - farms = derive2 { name="farms"; version="1.50.0"; sha256="1zd5f6prz2g00nvchfx4zaw3v722dn9149y205n3c0zv5q6p4w70"; depends=[affy Biobase MASS]; }; - fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.34.0"; sha256="0c85gwdbkw6z8xli3c7q6smwpalllr3ad4x5j40mjndnqrl0pzmm"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; - fastreeR = derive2 { name="fastreeR"; version="1.2.0"; sha256="04srd57vv4hhrqbysjh0v9cdhchixif4rkl10aqfjflyw72q5his"; depends=[ape data_table dynamicTreeCut R_utils rJava stringr]; }; - fastseg = derive2 { name="fastseg"; version="1.44.0"; sha256="1m1x7xmbxwa15vzd45h16pnib944f20pwinx1pyhba5hcngkikfi"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; - fcScan = derive2 { name="fcScan"; version="1.12.0"; sha256="0z83ncjxw9x8nvc6pncrvpf6lmamvgrv56j96s1f0x9jydk18chy"; depends=[doParallel foreach GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; }; - fcoex = derive2 { name="fcoex"; version="1.12.0"; sha256="01k8v41yqrlcq8x9aaxjfxd477g219jlawnjm2c6k34028ybsc52"; depends=[clusterProfiler data_table dplyr FCBF ggplot2 ggrepel igraph intergraph Matrix network pathwayPCA progress scales SingleCellExperiment sna stringr]; }; - fdrame = derive2 { name="fdrame"; version="1.70.0"; sha256="1p382fak15w2ny5kbvlwdl8iyi28y1avrsl0xk0ds4a0njljxp06"; depends=[]; }; - fedup = derive2 { name="fedup"; version="1.6.0"; sha256="0x0y32zr2h0x8ziv6z0q3dyalpbc4xbd3axqgdqf70mapf8wa5gc"; depends=[data_table dplyr forcats ggplot2 ggthemes openxlsx RColorBrewer RCy3 tibble]; }; - ffpe = derive2 { name="ffpe"; version="1.42.0"; sha256="0r0xw11c14bkzwis8ppfm8s6mw6k9fx14bnp4r02bcjgq5ih1jvq"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; - fgga = derive2 { name="fgga"; version="1.6.0"; sha256="18c2klg52kmnx0rrb3n0y12l1xq9yl0krjpzifb3i1gl7k66clcf"; depends=[BiocFileCache curl e1071 graph gRbase jsonlite RBGL]; }; - fgsea = derive2 { name="fgsea"; version="1.24.0"; sha256="1frl5mchbrgqyxxdlw76qqq5i8vv2fdmy8xl8h8c8cvvmlz393qk"; depends=[BH BiocParallel cowplot data_table fastmatch ggplot2 Matrix Rcpp]; }; - fishpond = derive2 { name="fishpond"; version="2.4.1"; sha256="0kc1xzq03kz548rfinxhc7gxm6021502b6v7bg2har0aq4vx79ml"; depends=[abind GenomicRanges gtools IRanges jsonlite Matrix matrixStats qvalue S4Vectors SingleCellExperiment SummarizedExperiment svMisc]; }; - flagme = derive2 { name="flagme"; version="1.54.0"; sha256="112vib2g3cvniqn800pn2ifalp5q2l1l7mvqfq8zhwp64i6qxivm"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; - flowAI = derive2 { name="flowAI"; version="1.28.0"; sha256="18zrlnjw89iglxhw65ys8x4r44pdzp5chrgwx7w44sh7yd8576g9"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; - flowBeads = derive2 { name="flowBeads"; version="1.36.0"; sha256="1ng2c0vm2qldipzjnks2qyv9ngwc489jwqfsa4kfiyvhm5dwm1hw"; depends=[Biobase flowCore knitr rrcov xtable]; }; - flowBin = derive2 { name="flowBin"; version="1.34.0"; sha256="1d6bkidvxw76jj8c64d2r0bggxss3xyy97w3qrhix8613w63adcs"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; - flowCHIC = derive2 { name="flowCHIC"; version="1.32.0"; sha256="18mcywl4857wmka63rcnvp2xvh8wj5r8gvbsri9a3f4190wg8yn9"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; - flowCL = derive2 { name="flowCL"; version="1.35.0"; sha256="1jxr0zn3fgm5nqishssxh332mmxfz3fc9zgshn0lbq4avxc2x128"; depends=[graph Rgraphviz]; }; - flowClean = derive2 { name="flowClean"; version="1.36.0"; sha256="1wqwq8fw0dk78l43p4cjzll3psc0d4mg7gjckddvpmzlg6w4ha3k"; depends=[bit changepoint flowCore sfsmisc]; }; - flowClust = derive2 { name="flowClust"; version="3.36.1"; sha256="1r27nm5dxlhl5rk96dkjfx8326bvdgx55xg4w2zji3m49x9db2gs"; depends=[Biobase BiocGenerics flowCore graph]; }; - flowCore = derive2 { name="flowCore"; version="2.10.0"; sha256="0j0ryyz3vcih964is5gdm2jp39ssdli9q6r03q6rj9nwzplq5asj"; depends=[BH Biobase BiocGenerics cpp11 cytolib matrixStats Rcpp RProtoBufLib S4Vectors]; }; - flowCut = derive2 { name="flowCut"; version="1.8.0"; sha256="0p66wcr940m5nvl024izqn3w0x6zmp0n7j43xj70arfcxrxp9gxd"; depends=[Cairo e1071 flowCore flowDensity]; }; - flowCyBar = derive2 { name="flowCyBar"; version="1.34.0"; sha256="1nbg49s18mxvr5pzv4lx4hvdrwxn5spagxn71zid5kgk13f142a6"; depends=[gplots vegan]; }; - flowDensity = derive2 { name="flowDensity"; version="1.32.0"; sha256="1gflq7s7akfjha7ijddgh9qshzwi1yhgp2s5p6gll0rsfaicaxs9"; depends=[car flowCore flowViz flowWorkspace gplots RFOC rgeos sp]; }; - flowFP = derive2 { name="flowFP"; version="1.56.3"; sha256="04f67vnn2ccxp8mw2sk2riqh0v4hk46fz1i66jsdp6j1vd650r7y"; depends=[Biobase BiocGenerics flowCore flowViz]; }; - flowGraph = derive2 { name="flowGraph"; version="1.6.0"; sha256="1srpzkvk69v90bqxz9mivfp69zvn45x6jbgvfnxwq0yz3s6x95is"; depends=[data_table effsize furrr future ggiraph ggplot2 ggrepel gridExtra htmlwidgets igraph Matrix matrixStats purrr Rdpack stringi stringr visNetwork]; }; - flowMap = derive2 { name="flowMap"; version="1.36.0"; sha256="11dvjmbyv46l55cp4jklqwx4000xhc3pxmwrpa1z2sbladmd9hiq"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; - flowMatch = derive2 { name="flowMatch"; version="1.34.0"; sha256="1c0qxypv5814m9fwrpzl44hii8fcn35xmj6wyimclnar3q0r4rs6"; depends=[Biobase flowCore Rcpp]; }; - flowMeans = derive2 { name="flowMeans"; version="1.58.0"; sha256="1hmr2i5svg1wvdgqhnp25k1c21p2pdd0ia9py5kp9sm5qvc9vngw"; depends=[Biobase feature flowCore rrcov]; }; - flowMerge = derive2 { name="flowMerge"; version="2.46.0"; sha256="1sr1icmkd27k7zzykwml44aqkk6fk1p697ndw9qsw6vvv0zp4d1n"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; - flowPeaks = derive2 { name="flowPeaks"; version="1.44.0"; sha256="0n3sbb9acvj5srrlxv58n858s9nns62y0pj46pplx5gv7i8hxbcp"; depends=[]; }; - flowPloidy = derive2 { name="flowPloidy"; version="1.24.0"; sha256="0x6cd0ng39jgwd3hxwfwqkk3grqb3dalv84yyp7cfc0y64nkpv64"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; - flowPlots = derive2 { name="flowPlots"; version="1.46.0"; sha256="1vqx2qww5y5p1mcv99qlm1k077gnd4dwmi83ax31rz5kqip2g7b0"; depends=[]; }; - flowSpecs = derive2 { name="flowSpecs"; version="1.12.0"; sha256="1xf0mf9s0srn7ch5hkl37d5igp20pi8jl52b06azdblqsgv3h0cr"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 reshape2 zoo]; }; - flowStats = derive2 { name="flowStats"; version="4.10.0"; sha256="10xq0rfnshvam2yh34566ywmsby44aa1fg8wqwmllm202rhcgl2p"; depends=[Biobase BiocGenerics cluster corpcor fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS mnormt ncdfFlow RColorBrewer rrcov]; }; - flowTime = derive2 { name="flowTime"; version="1.22.2"; sha256="0qmd2a50qy1fldqhp25nzafxi0jv7x2v2fhpmfckwn0qwkg3splp"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; - flowTrans = derive2 { name="flowTrans"; version="1.50.0"; sha256="0adhha052by515v43z5kvcr4hzv6z1mhx3jry1x4x75zj51wj8pm"; depends=[flowClust flowCore flowViz]; }; - flowVS = derive2 { name="flowVS"; version="1.30.0"; sha256="0sv05dzcik2qqvja0ag3ag3qpg5r89rzynil81z5m3b62xq1i6nz"; depends=[flowCore flowStats flowViz]; }; - flowViz = derive2 { name="flowViz"; version="1.62.0"; sha256="0yz2b3l0bv5i7vrr893wrs3jl215i17m2hr92iisdc6mh9i0lpz8"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; - flowWorkspace = derive2 { name="flowWorkspace"; version="4.10.1"; sha256="0jmbfclkfm0n2mshk94906kivii7awlskf7l7ydn8ki8wrpzxqg4"; depends=[BH Biobase BiocGenerics cpp11 cytolib data_table DelayedArray dplyr flowCore ggplot2 graph matrixStats ncdfFlow RBGL Rgraphviz Rhdf5lib RProtoBufLib S4Vectors scales XML]; }; - flowcatchR = derive2 { name="flowcatchR"; version="1.32.0"; sha256="1flq3n3j57yxq00dqqwl45xxacw7qgn2raqmnczgnsflihyysldz"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; - fmcsR = derive2 { name="fmcsR"; version="1.40.0"; sha256="00xi01wz61ip8pnbrpnpp8hncb8gyiw69qkbg0cl425rv6qjb3mr"; depends=[BiocGenerics ChemmineR RUnit]; }; - fmrs = derive2 { name="fmrs"; version="1.8.0"; sha256="1nw7ibbqw30p9mj3vi7pd3ixry6fwai02mg3rys48bld0aipw21l"; depends=[survival]; }; - fobitools = derive2 { name="fobitools"; version="1.6.0"; sha256="0i3bdg22750hf9l3hkgz5vjq0ysvr99571zrdabmq7m54788fl9w"; depends=[clisymbols crayon dplyr fgsea ggplot2 ggraph magrittr ontologyIndex purrr RecordLinkage stringr textclean tictoc tidygraph tidyr vroom]; }; - frenchFISH = derive2 { name="frenchFISH"; version="1.10.0"; sha256="1iylq196bl7ysypvcfqpp5gz5c8ax79p3icbyl31cxmj9ssf486a"; depends=[MCMCpack NHPoisson]; }; - frma = derive2 { name="frma"; version="1.50.0"; sha256="0pn8b7fgz1ys3pm603ya6nkngbc9q8dsx3zxijdzf1v0b1sm1fi1"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; - frmaTools = derive2 { name="frmaTools"; version="1.50.0"; sha256="0j6z94icgs9j1ryxr1a2fv9p14nzl3zy695fbc6d87gm0ccjy745"; depends=[affy Biobase DBI preprocessCore]; }; - funtooNorm = derive2 { name="funtooNorm"; version="1.22.0"; sha256="0qf2c28r6jv4cf8qpag4zi8k64b5x3mqs9jc6g8iy9v6323vdcpy"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; - gCrisprTools = derive2 { name="gCrisprTools"; version="2.4.0"; sha256="0rmxrvb97844qjis945drmk3z63ks89c587ysxc1ldka503za7rj"; depends=[Biobase ComplexHeatmap ggplot2 limma rmarkdown RobustRankAggreg SummarizedExperiment]; }; - gaga = derive2 { name="gaga"; version="2.44.0"; sha256="19sjqlrjxcphs5a3mzwr0a7a504ap2zpwnzlrzmhad7v1dgicn5g"; depends=[Biobase coda EBarrays mgcv]; }; - gage = derive2 { name="gage"; version="2.48.0"; sha256="08qvg1cmrln7w5z33r81kz1zjs8fcj3qbxm1crbsazvb6gdpqyyi"; depends=[AnnotationDbi GO_db graph KEGGREST]; }; - gaggle = derive2 { name="gaggle"; version="1.66.0"; sha256="16w40jkaz1nhvzwg3q62mzigh9kpvhhyky1bnz2bwjbl49fspvqg"; depends=[graph rJava RUnit]; }; - garfield = derive2 { name="garfield"; version="1.26.0"; sha256="0cm2lg9qsnlp60i3rc2c4d6xc73r285rznkgdkw646c62s48lhs8"; depends=[]; }; - gcapc = derive2 { name="gcapc"; version="1.22.0"; sha256="1n3g6fvj86q9n6q3ccmj6ns0gdd4sqfdm43sh1hpxkid9v88209y"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; - gcatest = derive2 { name="gcatest"; version="1.28.2"; sha256="1f2bp16x7ji9sh5kk150w57gqpbrisrb0xlkjv8wnd63j0vnng3l"; depends=[lfa]; }; - gcrma = derive2 { name="gcrma"; version="2.70.0"; sha256="0a3wjwjgjkpmfvgg0b4jc1rkwzsqrjbaziydjfnkll4rw9xcavy1"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; - gdsfmt = derive2 { name="gdsfmt"; version="1.34.1"; sha256="1sx7yw44djrnc6km8fip3w3vclkgz5s0w6ibp8lpvmjcay8nv2sx"; depends=[]; }; - geNetClassifier = derive2 { name="geNetClassifier"; version="1.38.0"; sha256="1ahlml1ssjmg126ki1phdprq4v0nawzbbfq8jray5ypaj32qx3r2"; depends=[Biobase e1071 EBarrays minet]; }; - gemini = derive2 { name="gemini"; version="1.12.0"; sha256="12p44p3nzn32am2m609k64iy4lfj42dygdxmb770ld8lpihhrkmz"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; }; - gemma_R = derive2 { name="gemma.R"; version="1.0.1"; sha256="0m6mmv55ghvwqw462ym335bcng61c52d84irkn5xwq6yzr2dgxsa"; depends=[Biobase bit64 data_table glue httr jsonlite lubridate magrittr memoise rappdirs rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; - genArise = derive2 { name="genArise"; version="1.74.0"; sha256="19yrrmqb83zg075cbwfb2k3s96fvhl19bhjc5v9xva12k3n14dxh"; depends=[locfit tkrplot xtable]; }; - genbankr = derive2 { name="genbankr"; version="1.26.0"; sha256="06nkwpsaqrmja9731d3i420f1i8v3vzq20ih44cwxnd7a0zja288"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; - geneAttribution = derive2 { name="geneAttribution"; version="1.24.0"; sha256="00imcb2slqfflcm3jalcjspqv8m9kyfvv1m1nxlxbdaa4qgrn9yx"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; - geneClassifiers = derive2 { name="geneClassifiers"; version="1.22.0"; sha256="03ccb749frf3pp2rqcyf1jly7rpld3nrg61507xvk3x841nxnas4"; depends=[Biobase BiocGenerics]; }; - geneRecommender = derive2 { name="geneRecommender"; version="1.70.0"; sha256="0iki40fg9mdkj131sc3f4wj6b4mz0jidpbzyxskcdm4l81ar8amv"; depends=[Biobase]; }; - geneRxCluster = derive2 { name="geneRxCluster"; version="1.34.0"; sha256="0amxn2gw2k4hvhxy446v7f4s4jcgm5mrv1l1afv3svmlpq57llrb"; depends=[GenomicRanges IRanges]; }; - geneXtendeR = derive2 { name="geneXtendeR"; version="1.24.0"; sha256="0b0p0p00261g296a0bwzl9fnmd5gky8l3dd33l8a4v5p08kfciz9"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; - genefilter = derive2 { name="genefilter"; version="1.80.3"; sha256="047p84qxfqqm0d0ik7fxcs37fmg0yazsn9rz7h4g24cksb45p689"; depends=[annotate AnnotationDbi Biobase BiocGenerics survival]; }; - genefu = derive2 { name="genefu"; version="2.30.0"; sha256="0s10bz0iis6kwbb9ss9m0bz7al52yq9r0i9gcn8zvzb3533zr5mk"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; }; - geneplast = derive2 { name="geneplast"; version="1.24.1"; sha256="0157ja72p3izzy9d6qpk3yfxq9qmr8a4lh97wrjfk944h32m8w2l"; depends=[ape data_table igraph snow]; }; - geneplotter = derive2 { name="geneplotter"; version="1.76.0"; sha256="094v4skdvsnc7bp3acj801ih022w9k96f2b857326vd19khz0ava"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; - genoCN = derive2 { name="genoCN"; version="1.50.0"; sha256="1m53f6yd692rsrhhr1kq4mwv13kmjlkq8cvcbkn736vbpq07j743"; depends=[]; }; - genomation = derive2 { name="genomation"; version="1.30.0"; sha256="098ldnh45f48145jfsbdw5dqv5yiqkfci1fy6h6gjz7nh3dvnil5"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; - genomeIntervals = derive2 { name="genomeIntervals"; version="1.54.0"; sha256="0kl280hdqiqkzb21l4z49jkidvr8s5bzdxpl38ci8ljia5imi38y"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; - genomes = derive2 { name="genomes"; version="3.28.0"; sha256="1lsmcz2l4mv62q7w2rncb0m92jwhz4p05yfqqk0apjv1hffc3y9j"; depends=[curl readr]; }; - genomicInstability = derive2 { name="genomicInstability"; version="1.4.0"; sha256="0553wd872zlfwqily7pww9frpn40jqp8i0hgg8sf1qmjn9apj24f"; depends=[checkmate mixtools SummarizedExperiment]; }; - genotypeeval = derive2 { name="genotypeeval"; version="1.30.0"; sha256="0mi1d86i4v8gafwszy978n61s5pszrsmbh1in4nggdqwvwnvkqnl"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; - gep2pep = derive2 { name="gep2pep"; version="1.18.0"; sha256="1bijky1qjp5nw3w27nsl9w4bq41zqx98ki7w2s3mz0qz6hwahnw1"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; - gespeR = derive2 { name="gespeR"; version="1.30.0"; sha256="0mrfc7mfb7q2vlw4bppjgpgna4h7s3sidiv5lpjqxbi6cmva6ka0"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; - getDEE2 = derive2 { name="getDEE2"; version="1.8.0"; sha256="1yclldn6hfjdbb5gc6q2kdfz65hxx2ija3apramvhwcbq2h1ygpp"; depends=[htm2txt SummarizedExperiment]; }; - geva = derive2 { name="geva"; version="1.6.0"; sha256="00vkg5gil1jr1hv1swccxhs9iyrn2vjrggrf04y6svfqcs3h9hh8"; depends=[dbscan fastcluster matrixStats]; }; - ggbio = derive2 { name="ggbio"; version="1.46.0"; sha256="1gm3y1nx0ah8wcrg2dh1xd688izm2sijz7bhgsasxckmmkmkp60g"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - ggcyto = derive2 { name="ggcyto"; version="1.26.4"; sha256="1pj1v0bhvckvwn1p826phskqz9lv71c1913cz5w0fd87dzdbpzpj"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; - ggmanh = derive2 { name="ggmanh"; version="1.2.0"; sha256="1igvm20k3y0kfa5ia45ynyp9d90c5czjbdz95dvj1gzjy7ql5c4j"; depends=[gdsfmt ggplot2 ggrepel RColorBrewer rlang scales SeqArray]; }; - ggmsa = derive2 { name="ggmsa"; version="1.4.0"; sha256="0pqxf7dlb403xj4d5s683k5zdakwgq3ic98lk43dl0ib19mg3dih"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 ggtree magrittr R4RNA RColorBrewer seqmagick statebins tidyr]; }; - ggspavis = derive2 { name="ggspavis"; version="1.4.0"; sha256="00s1xadh164adziszqjfzcznjjpbcf805xshp0c8qr24g0d86jim"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - ggtree = derive2 { name="ggtree"; version="3.6.2"; sha256="177nq6arhxp0x6zsf2c6cn3xxwfk65dihbpni6mb9ifgnmfqdjmx"; depends=[ape aplot cli dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; - ggtreeDendro = derive2 { name="ggtreeDendro"; version="1.0.0"; sha256="1i562x3f28wm5ac5izzpriwh9ywqq40zbbv5g70vjyqcwsh35wh4"; depends=[ggplot2 ggtree tidytree]; }; - ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.8.1"; sha256="0sbjkljv8zj5plr4az5hiz2m0bjnqfgrwcd02rmlrnxhbzj2kcj6"; depends=[cli ggnewscale ggplot2 ggtree rlang tidytree]; }; - girafe = derive2 { name="girafe"; version="1.50.0"; sha256="0kv6s77fs6rgrrv5hcr8qc86ida0qrwcfzby2xcyris0fk56k5sc"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; - glmGamPoi = derive2 { name="glmGamPoi"; version="1.10.2"; sha256="1ihjqzdhx6k99gdd4556xxn9822sblg6vmblcmbzml01bhv6xzar"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array MatrixGenerics matrixStats Rcpp RcppArmadillo rlang SingleCellExperiment SummarizedExperiment]; }; - glmSparseNet = derive2 { name="glmSparseNet"; version="1.16.0"; sha256="1573cclc2qn4mhw24k7ab75a9inc7z205b0j85favmvv1zcyqal4"; depends=[biomaRt digest dplyr forcats futile_logger futile_options ggplot2 glmnet glue httr Matrix MultiAssayExperiment readr reshape2 stringr SummarizedExperiment survminer]; }; - globalSeq = derive2 { name="globalSeq"; version="1.26.0"; sha256="0l4n755v8gxxrxqgzhks4yz06rr3m703zaaavh0fyryk2mnijpip"; depends=[]; }; - globaltest = derive2 { name="globaltest"; version="5.52.1"; sha256="1g5dv3bw0fj8sq0hsr8c7nh6n1rzvx1bisqlyqjqq3f8lsyb51kb"; depends=[annotate AnnotationDbi Biobase survival]; }; - gmapR = derive2 { name="gmapR"; version="1.40.0"; sha256="03fi4ld4f102xch75z6s67kb27mvyg5zik5n59ni4zdiipi9i2cl"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - gmoviz = derive2 { name="gmoviz"; version="1.10.0"; sha256="0vafsa3i8z08bfl4x0adlg3bf0jdw4a7zb459cw7bfdkkw8g4850"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; }; - goProfiles = derive2 { name="goProfiles"; version="1.60.0"; sha256="0wkvb79lb309ff6iv8p23z9rwrrv7qha86ngs0ag670mpm9yra5j"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; - goSTAG = derive2 { name="goSTAG"; version="1.22.0"; sha256="06wp18i25c35w651gz9xl9x4yklx52vrz6r5pr5z15pgwjc0n5hy"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; - goSorensen = derive2 { name="goSorensen"; version="1.0.0"; sha256="0vv8wx6213wawr9zvy0x8nlr4cj6ccpgfasynn7qi85hmsx3ygfm"; depends=[clusterProfiler GO_db goProfiles org_Hs_eg_db]; }; - goTools = derive2 { name="goTools"; version="1.72.0"; sha256="1h9aj2n8w7z04jjhd8gabmsvr4ib0vhms3iiry00g3xp68yc8zdg"; depends=[AnnotationDbi GO_db]; }; - goseq = derive2 { name="goseq"; version="1.50.0"; sha256="0x89lv84l3qcahca54njcza326553zij2xyagy18mwlprdrq4iy8"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; - gpls = derive2 { name="gpls"; version="1.70.0"; sha256="0kxk22l9rm4kxlf0mr4zb01nr2vlia1g4xq9fsd6fdn6d535k1ci"; depends=[]; }; - gpuMagic = derive2 { name="gpuMagic"; version="1.14.0"; sha256="02ksc7cls7q8yrcsr0i15i6rb3nyzxapafg0zkwgj55x28gy0q9x"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; }; - granulator = derive2 { name="granulator"; version="1.6.0"; sha256="0im7xhvdxm97hda6zwj22xlcinyjqi2jfykw7mi091z2d0by7rln"; depends=[cowplot dplyr dtangle e1071 epiR ggplot2 ggplotify limSolve magrittr MASS nnls pheatmap purrr rlang tibble tidyr]; }; - graper = derive2 { name="graper"; version="1.14.2"; sha256="0zj9mnx56as37f94cpblq0jmcdgn5rl942n1hzlf7ppri9a9i7r8"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; }; - graph = derive2 { name="graph"; version="1.76.0"; sha256="1hdbxjvgkxb9m341i9qbskb41g2z8qifkhgkpj2xb20s2dnxn3cc"; depends=[BiocGenerics]; }; - graphite = derive2 { name="graphite"; version="1.44.0"; sha256="0gkjab12ncag1vslc5bwlr0m5ac3ifq9ka5nfq7ckrpns98s7k0w"; depends=[AnnotationDbi graph httr purrr rappdirs rlang]; }; - groHMM = derive2 { name="groHMM"; version="1.32.0"; sha256="1as3k6avyc4l7saw02x0ql68c06msvs1s824vc1xg6lkdsi4lsyc"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; - gscreend = derive2 { name="gscreend"; version="1.12.0"; sha256="0d8ffg4mis6hy4xx6f8ry5vxd2cilzxws56jqpv8diw0dnvfv1dz"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; }; - gsean = derive2 { name="gsean"; version="1.18.0"; sha256="0gvir3pdshsv22v2q619lzsi2wwyb5bql3vsgmzc3z1nj6jij0zr"; depends=[fgsea PPInfer]; }; - gtrellis = derive2 { name="gtrellis"; version="1.30.0"; sha256="09f20qam59iwr48g854b7ydbsbqy90mdy83i2i0am4gybv5isgqg"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; - gwascat = derive2 { name="gwascat"; version="2.30.0"; sha256="0sj51cli1p8k7z1nl5rfswjlzrk9cqnpr1a1pr618gk74kfwqf5a"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges readr S4Vectors snpStats VariantAnnotation]; }; - gwasurvivr = derive2 { name="gwasurvivr"; version="1.16.0"; sha256="0rrcykwn922wwqrz6gayvwid8hpfqms14cgzvnqh9gcwgcjjrica"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; - h5vc = derive2 { name="h5vc"; version="2.32.0"; sha256="09dczq9yl28zy2jih24blxlpsmkphwaks0hlp3yl5ibfwdnihnk9"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; - hapFabia = derive2 { name="hapFabia"; version="1.40.0"; sha256="09c5ra1smy38w75dqzsamynp8xny6hzb75vn1207hq7z5km8lb9c"; depends=[Biobase fabia]; }; - hca = derive2 { name="hca"; version="1.6.0"; sha256="1z20rlyc4920hdx0npqhbpmplawlwz8d5gyy5rf95g84d6klxs7c"; depends=[BiocFileCache digest dplyr DT httr jsonlite miniUI readr shiny tibble tidyr]; }; - heatmaps = derive2 { name="heatmaps"; version="1.22.0"; sha256="01jvfjfh3ji0f6wf3xwmz0abpm23x1aan7dw0nycm5cm0bxjwgh4"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; - hermes = derive2 { name="hermes"; version="1.2.0"; sha256="1akh46jvhl63lva8jfpqzckczvdw0yjpkw5c0qnvgxl3sajvbw0n"; depends=[assertthat Biobase BiocGenerics biomaRt checkmate circlize ComplexHeatmap DESeq2 dplyr edgeR EnvStats forcats GenomicRanges ggfortify ggplot2 ggrepel IRanges lifecycle limma magrittr matrixStats MultiAssayExperiment purrr R6 Rdpack rlang S4Vectors SummarizedExperiment tidyr]; }; - hiAnnotator = derive2 { name="hiAnnotator"; version="1.32.0"; sha256="05l07ycm72i2qv7wlbssk1wh3ly961x444hwbpaii8fm65x5a0k2"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; - hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.34.0"; sha256="00m0vkdb552nw0yn6wx01wdvf6g8i33q0wl4ishscmvcwld803vj"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; - hierGWAS = derive2 { name="hierGWAS"; version="1.28.0"; sha256="04jbrin7jyj72bfxp3rgmmr796gy2v3mvnb593w9ldq5620az20b"; depends=[fastcluster fmsb glmnet]; }; - hierinf = derive2 { name="hierinf"; version="1.16.0"; sha256="0f8m0wbghwjlavkj4r089z7xix27jnc57d0sddw4hamv9hi6zm95"; depends=[fmsb glmnet]; }; - hipathia = derive2 { name="hipathia"; version="2.14.0"; sha256="0ghav95b2cv0y61m14yq332yzrjhipm01dnc9qvb9zqdnwwqhdj1"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; - hmdbQuery = derive2 { name="hmdbQuery"; version="1.18.0"; sha256="12q6cr8fwl298vd2v3cdzm6cjkmwfssn4h1cy3f7ky1n7dkpnw30"; depends=[S4Vectors XML]; }; - hopach = derive2 { name="hopach"; version="2.58.0"; sha256="06qpg76d8ycpgvxfblz4va7i2f705rv3bi19c2lw84vnkmhzdcf6"; depends=[Biobase BiocGenerics cluster]; }; - hpar = derive2 { name="hpar"; version="1.40.0"; sha256="1dls59d2ysk8ngk5c6nx7xqgc2iygbdlzf88gccf2wm8zhy8m3f4"; depends=[]; }; - hummingbird = derive2 { name="hummingbird"; version="1.8.0"; sha256="1glnxhqvdxb1n8xk3pjh68nyg5vqvxszd7q24qir380x8d9ncrpg"; depends=[GenomicRanges IRanges Rcpp SummarizedExperiment]; }; - hypeR = derive2 { name="hypeR"; version="1.14.0"; sha256="0vni4s1rvdjm4l5jaa2kq0i1z87jw09vd1pw63aa0v6qk1vr96vc"; depends=[dplyr ggforce ggplot2 htmltools httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable reshape2 rlang rmarkdown scales shiny stringr visNetwork]; }; - hyperdraw = derive2 { name="hyperdraw"; version="1.50.0"; sha256="1fl4ia2jskvmbwk0y1wd0x4dgqph0av7bx2zffrvd1a5ppcjmsra"; depends=[graph hypergraph Rgraphviz]; }; - hypergraph = derive2 { name="hypergraph"; version="1.70.0"; sha256="1jvnvzjivjwqxh19c3g37kpyl6i6mxw99ma3ypjjgxzx898nsg45"; depends=[graph]; }; - iASeq = derive2 { name="iASeq"; version="1.42.0"; sha256="1v7ax7847ygdy6mxwbg6awy52dms0nirbyn1z0cwsjssvi4q4hd5"; depends=[]; }; - iBBiG = derive2 { name="iBBiG"; version="1.42.0"; sha256="0yhvp522s23y6239v340ilbyaii5qfj7vc76x0j6c56yd807zmhb"; depends=[ade4 biclust xtable]; }; - iBMQ = derive2 { name="iBMQ"; version="1.38.0"; sha256="1k08dslcyfyzyb9zn1r0ddnvrrp2370n4w3762xz1zdsfs7h551k"; depends=[Biobase ggplot2]; }; - iCARE = derive2 { name="iCARE"; version="1.26.0"; sha256="1x47wy0spsfv58b96ys2ym0f3ivs6b68a2h82wyp5viyq7imphbn"; depends=[gtools Hmisc plotrix]; }; - iCNV = derive2 { name="iCNV"; version="1.18.0"; sha256="1j1cvk42l9p2r6n6zhijw26ydwki6fpj8d70592mqhv9m38ms9i3"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; - iCOBRA = derive2 { name="iCOBRA"; version="1.26.0"; sha256="0mh7arn5rv26picz05ywil5ynras91xv6diwh47s9ip75vp9s3cy"; depends=[dplyr DT ggplot2 limma markdown reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; - iCheck = derive2 { name="iCheck"; version="1.28.0"; sha256="0aa76j1vlrhyfppqa91dfzrh5ljxx7zylycrmjy35hx0ja0zck00"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; - iChip = derive2 { name="iChip"; version="1.52.0"; sha256="1c3l24v0hm2dnidg8l9v6gqwrm51pqhw3mjg4x1a4vy1rq3j6jrj"; depends=[limma]; }; - iClusterPlus = derive2 { name="iClusterPlus"; version="1.34.3"; sha256="0d7qsdjry5avflrvgjj287xqn9dr54pqiqvpgywzdmdwn82m0dfp"; depends=[]; }; - iGC = derive2 { name="iGC"; version="1.28.0"; sha256="1knvx7b4h85ldqxq3a54fm05axb8zcvqm5by98wsdz4h6dzikxjh"; depends=[data_table plyr]; }; - iPAC = derive2 { name="iPAC"; version="1.42.0"; sha256="0dsmjqipj871ygjzc8js5xvy5xpfj22853c4a3wdf2qhriw1c0ms"; depends=[Biostrings gdata multtest scatterplot3d]; }; - iPath = derive2 { name="iPath"; version="1.4.2"; sha256="1dv7ipc8vnzv8qwj9ywgkisyyfacgv74sniac07vbsk7ca6vk79z"; depends=[BiocParallel ggplot2 ggpubr matrixStats mclust Rcpp RcppArmadillo survival survminer]; }; - iSEE = derive2 { name="iSEE"; version="2.10.0"; sha256="1l2bwqk7ivj79xxjzc0hc3x5v5h19zpk9pa0vbpb5p64z1pshnjn"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 ggrepel igraph mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; - iSEEhex = derive2 { name="iSEEhex"; version="1.0.0"; sha256="06n9ls71rg2kilr3kjlwwk5rnj8v68svjmzcr2hg0gwwyaxcyk9w"; depends=[ggplot2 hexbin iSEE shiny SummarizedExperiment]; }; - iSEEhub = derive2 { name="iSEEhub"; version="1.0.0"; sha256="1ggkm7931axcl0464h0d5cnf5lbd6nx3fbac1zrlkwyb2lym7wi8"; depends=[AnnotationHub BiocManager DT ExperimentHub iSEE rintrojs S4Vectors shiny shinydashboard shinyjs SingleCellExperiment SummarizedExperiment]; }; - iSEEu = derive2 { name="iSEEu"; version="1.10.1"; sha256="04c2ha4s4fvk30qm65shzzvymiilj0y85qdjc3lw4c90jfvnf44q"; depends=[colourpicker DT ggplot2 IRanges iSEE iSEEhex S4Vectors shiny shinyAce SingleCellExperiment SummarizedExperiment]; }; - iSeq = derive2 { name="iSeq"; version="1.50.0"; sha256="1h0da0298g2lvvqbys3jh2acjjzh1dvivfpl07g319nafxkfsi1q"; depends=[]; }; - iasva = derive2 { name="iasva"; version="1.16.0"; sha256="192cpnpyyjf16pqnzj70nsqkzv6wp4acia7fciz1zvz5jhncrsva"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; - ibh = derive2 { name="ibh"; version="1.46.0"; sha256="0kxqpb9711yxg5xz2mhpwjw9nwixmfzzy6qql1sifi4mp6bh2fzf"; depends=[simpIntLists]; }; - icetea = derive2 { name="icetea"; version="1.16.0"; sha256="03v3ymmzj8dbpayjjpxm3cm8c2ysyd2p7yq0hp7lmv8pyq9x05xy"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; - ideal = derive2 { name="ideal"; version="1.22.0"; sha256="19byvmqv5bx2s4jsjr317xwpd96miz83gdamw9xx1byzka6wz29m"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; - idiogram = derive2 { name="idiogram"; version="1.74.0"; sha256="094n43lv6v1l1hcrfvgyx8a5dp7sk154f25dwrxb0b2k4g2kxdn0"; depends=[annotate Biobase plotrix]; }; - idpr = derive2 { name="idpr"; version="1.8.0"; sha256="06apnwy114hbjmfvyc47zajchhi9l7zmnxbdqx13d9gazj2sigbf"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; }; - idr2d = derive2 { name="idr2d"; version="1.12.0"; sha256="1qrrjb67wymak2nl8jisjv5xrp3sjmyx19rr7wrp7ffh84y8dm1b"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; - igvR = derive2 { name="igvR"; version="1.18.1"; sha256="0249lqj83qzxrpcbg8bgn0zijvx0dg0vdbli4f8h42mqx3jiihd4"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv httr RColorBrewer rtracklayer VariantAnnotation]; }; - illuminaio = derive2 { name="illuminaio"; version="0.40.0"; sha256="1cw526mbhh0czkwk99qnr6hfwi4k4xi2bm5p14kw9sr00if59x12"; depends=[base64]; }; - imageHTS = derive2 { name="imageHTS"; version="1.48.0"; sha256="124pksw08b88bj7l8pckzvgk6sf54d633cnbq2r5il7a09i4caim"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; - imcRtools = derive2 { name="imcRtools"; version="1.4.2"; sha256="0d3gcqq1jc7h9mvhvmyf5b524pyd9cqnwx2ci2y75l81jqyqb0hb"; depends=[abind BiocNeighbors BiocParallel concaveman cytomapper data_table distances dplyr DT EBImage ggplot2 ggraph igraph magrittr MatrixGenerics pheatmap readr RTriangle S4Vectors scuttle sf SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tidygraph tidyselect viridis vroom]; }; - immunoClust = derive2 { name="immunoClust"; version="1.30.0"; sha256="0isqbgg5bmxlcw4nhhsz2dgpzhjkyz690kgj4qbrx00k0xq1wkn4"; depends=[flowCore lattice]; }; - immunotation = derive2 { name="immunotation"; version="1.5.0"; sha256="09fahcn8jcf7xdjhqjiaphnkn8v303ancb0ixc03frhqk1k8srqv"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; - impute = derive2 { name="impute"; version="1.72.3"; sha256="1qq80za9bkg0wqnlckvahnjz08xacwvpnflwnrmwr2xg0ifkis38"; depends=[]; }; - infercnv = derive2 { name="infercnv"; version="1.14.2"; sha256="04m51jdahhmj31cs2af9il5zijkpb255f9p06i8ga0v3g79gj1bp"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov igraph Matrix parallelDist phyclust RANN RColorBrewer reshape2 rjags Seurat SingleCellExperiment SummarizedExperiment tidyr]; }; - infinityFlow = derive2 { name="infinityFlow"; version="1.8.0"; sha256="03kmx5hsqzcjc1vw84ylnahq8ys42lanbir7a20lrhb3r7380swa"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; }; - intansv = derive2 { name="intansv"; version="1.38.0"; sha256="15nrx15jpm4dpv249vxvgkvz2hh8980hqlr3vv4m24a2gcrn6sn1"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; - interacCircos = derive2 { name="interacCircos"; version="1.8.0"; sha256="0yx7am1w9facdj7i1kcrhh65saq2bll7q6vh0i39dhw6fwciih17"; depends=[htmlwidgets plyr RColorBrewer]; }; - interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.36.0"; sha256="0zh6l2qdl4hvplc3d1p6y0fvr5wv7nijagj4laf2jb0y2jrs8c00"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; - interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.36.0"; sha256="1j2cz929q9hwkchnzcs3mnbmhg68mm06r9bgylnbll4j5ibqicrz"; depends=[BiocGenerics DT shiny]; }; - ipdDb = derive2 { name="ipdDb"; version="1.16.0"; sha256="0kza7156a4b79jswxwj7knc4sgknpv9sm4l41lgjrzzm0vipczn0"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; - isobar = derive2 { name="isobar"; version="1.44.0"; sha256="1p9kwkj0yr8in4hxhvy85wvgf5zc9m57b8skgwb2331fmbq8iipn"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; - isomiRs = derive2 { name="isomiRs"; version="1.26.0"; sha256="0ybnr5y3ji3v7b7wn6762v92xvy6y6zl0vq4z8mz6mnqr3245zc6"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; - iterClust = derive2 { name="iterClust"; version="1.20.0"; sha256="1rdn88c65ybalr6sv7vlcmw3272l59gvnrv8xc81phlszzv1nqd5"; depends=[Biobase cluster]; }; - iterativeBMA = derive2 { name="iterativeBMA"; version="1.56.0"; sha256="0pplkj731v94aq9jkwcxcr5ddd88qssnvl8r03vwll3c003pp3yk"; depends=[Biobase BMA leaps]; }; - iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.56.0"; sha256="02zcwrb9kj9q444rg3qqsms80qapxfx9mpwam6gbbz6ziqp3pzcb"; depends=[BMA leaps survival]; }; - ivygapSE = derive2 { name="ivygapSE"; version="1.20.0"; sha256="0axxj9i83djpms8xhgw2ishac1p9866v4dbsy9fgs3plym7jzm8g"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; - karyoploteR = derive2 { name="karyoploteR"; version="1.24.0"; sha256="1dcxq3651903wwzr7bww8c4wd8h5h7rklnqfgklqpss0psx59d2w"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - katdetectr = derive2 { name="katdetectr"; version="1.0.0"; sha256="15mbn0n2g58jfmvwaczd34fhhd1bj9sd7kd9bnvb0y89i8f7k1d7"; depends=[Biobase BiocParallel BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 changepoint changepoint_np checkmate dplyr GenomeInfoDb GenomicRanges ggplot2 ggtext IRanges maftools plyranges Rdpack rlang S4Vectors tibble tidyr VariantAnnotation]; }; - kebabs = derive2 { name="kebabs"; version="1.32.0"; sha256="0cry6mb4k128afl7r2jld1g7nl12qvihn59j7867v4k70ia33lxz"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; - keggorthology = derive2 { name="keggorthology"; version="2.50.0"; sha256="1znc7lw6dh5yb94fcx46l2lvbnxki0pilcamzmjc5x8r2bhvjrrr"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; - kissDE = derive2 { name="kissDE"; version="1.18.0"; sha256="0yrpz3sq6acx2200malb05b4wcw4p1vf8wlyc3dgswnqi61wgpnl"; depends=[ade4 aods3 Biobase DESeq2 doParallel DSS DT factoextra foreach ggplot2 gplots matrixStats shiny shinycssloaders]; }; - lapmix = derive2 { name="lapmix"; version="1.64.0"; sha256="0rhdzvbhsvnhlqd1bkbi9p8fqpc0lvm6jw4923dlmv68lxlfy9sb"; depends=[Biobase]; }; - ldblock = derive2 { name="ldblock"; version="1.28.0"; sha256="0i8v4wfp207f5dpf3y2n8fqn7mc4khj92gb209vzc3y3kbwp2c6n"; depends=[BiocGenerics httr Matrix rlang]; }; - lefser = derive2 { name="lefser"; version="1.8.0"; sha256="07bymf3gzb74d8m9ddsz1vjdg1f1a1j41nqpn6iz7mqkf83dh46c"; depends=[coin ggplot2 MASS SummarizedExperiment]; }; - les = derive2 { name="les"; version="1.48.0"; sha256="0rsg0q437sm33byg3ksvckmparym9k168vm9jicf0q92g4cq146m"; depends=[boot fdrtool gplots RColorBrewer]; }; - levi = derive2 { name="levi"; version="1.16.0"; sha256="13adc39arg071hjw84lawr8rabfz1v7c6cjcbidsw6mz470x0v8h"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 rmarkdown shiny shinydashboard shinyjs testthat xml2]; }; - lfa = derive2 { name="lfa"; version="1.28.2"; sha256="0z8aa2435f7v2l6zwv47v2a6p9hal156dsh8v1iri233d1qx7fax"; depends=[corpcor]; }; - limma = derive2 { name="limma"; version="3.54.2"; sha256="1qch34znld9i8sy1xwpy23z2zs07nj39wkfmgfi7qw141vn6gr8b"; depends=[]; }; - limmaGUI = derive2 { name="limmaGUI"; version="1.74.0"; sha256="0ff4k88szb4bfjgcflq9jls4wlchw0izr0ibjb8hrmz877w6370f"; depends=[limma R2HTML tkrplot xtable]; }; - lineagespot = derive2 { name="lineagespot"; version="1.2.0"; sha256="13h6xxdmsgb6gxqdwzr544758y8plsm934rk81p1fzw94xs4hk1d"; depends=[data_table httr MatrixGenerics stringr SummarizedExperiment VariantAnnotation]; }; - lionessR = derive2 { name="lionessR"; version="1.12.0"; sha256="1gih08dd35rmmynwwr86szfb5ygcsf1jh077nsf048x6xfaq4wp1"; depends=[S4Vectors SummarizedExperiment]; }; - lipidr = derive2 { name="lipidr"; version="2.12.0"; sha256="1kr7s5lq8l25c7c1qarpj879l2l93bc9677yjkb0xgwi8h8zkwnn"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; - lisaClust = derive2 { name="lisaClust"; version="1.6.3"; sha256="0g6j07wi952syzly21qaqk4xayw6lcp8bscnll15bcmkg42ixj9w"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 pheatmap purrr S4Vectors SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom spicyR SummarizedExperiment tidyr]; }; - lmdme = derive2 { name="lmdme"; version="1.40.0"; sha256="13nyndbmxmyyrs84fpgnak6zxikrhzbmkaykiffr7khpknszx388"; depends=[limma pls stemHypoxia]; }; - loci2path = derive2 { name="loci2path"; version="1.18.0"; sha256="1l9mv3cg08wqi81m4clz3y7yr4l38s44s384gl2hcw64xp55ar3g"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; - logicFS = derive2 { name="logicFS"; version="2.18.0"; sha256="17sy0bkcwxqlxrl44i5ncf203ds5a25d6p23vkkj64fiszkyq8p0"; depends=[LogicReg mcbiopi survival]; }; - logitT = derive2 { name="logitT"; version="1.56.0"; sha256="1mi2psbmz1cd5ms084wpljiv8kh1fdpwkaasj1j4axcw5wds7bqd"; depends=[affy]; }; - lpNet = derive2 { name="lpNet"; version="2.30.0"; sha256="148kvxav3mqxa7z6m8wp8qxlv1w7ladw7za1d7qaly7hbpll21yy"; depends=[lpSolve]; }; - lpsymphony = derive2 { name="lpsymphony"; version="1.26.3"; sha256="0iqc6km4pw50li2q35km8jpa0p3i6a6way910wcz56yd2jjbjyz5"; depends=[]; }; - lumi = derive2 { name="lumi"; version="2.50.0"; sha256="1091458is69dxnjrcd11czqy55c68sdnkrmpvlm6hw2cbghs2bjq"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; - m6Aboost = derive2 { name="m6Aboost"; version="1.4.0"; sha256="093fz8yh5hd478q4hvgmpi5kbjbh820mmjvx108n2lic6pp3j285"; depends=[adabag Biostrings BSgenome dplyr ExperimentHub GenomicRanges IRanges rtracklayer S4Vectors]; }; - mAPKL = derive2 { name="mAPKL"; version="1.28.0"; sha256="0nj2r54djps19lar2sp6bhdi5nkid195xyaqzzam2r7piwr8xv8s"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; - mBPCR = derive2 { name="mBPCR"; version="1.52.0"; sha256="18nzcglzh97g7hxbphn0gl1k8q1fp0055djrw10vq9rxc5sqx9s0"; depends=[Biobase GWASTools oligoClasses]; }; - mCSEA = derive2 { name="mCSEA"; version="1.18.0"; sha256="1j5kyjm2llwqvf63ah65hjci56xhjhsvjw77ra9k6fiyz7phfli2"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; - maCorrPlot = derive2 { name="maCorrPlot"; version="1.68.0"; sha256="07z6amr19dg2i5zvz86xs7f5nk82b5qj9slv69r9pbiifn6pci9d"; depends=[lattice]; }; - maPredictDSC = derive2 { name="maPredictDSC"; version="1.36.0"; sha256="0kbpckkm29x6n29a4jgb3l7bip5smrkl2jrqv5iix8d6lm21pq1s"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; - maSigPro = derive2 { name="maSigPro"; version="1.70.0"; sha256="048h2n50fjr1sxm6ls4d7g5jwhdlb65admnvwvdrzhs788vi0hx0"; depends=[Biobase MASS mclust venn]; }; - maanova = derive2 { name="maanova"; version="1.68.2"; sha256="1rcxvv0vcvksswjd3vry68nmvrbh05p5pica48bwcar93jh70bx9"; depends=[Biobase]; }; - macat = derive2 { name="macat"; version="1.72.0"; sha256="11sjkk5d0r9fhxjmv4m078dyy4zb7nn7zbasn7fa16g37xyhrbb6"; depends=[annotate Biobase]; }; - made4 = derive2 { name="made4"; version="1.72.0"; sha256="0ylcigzbahic99afqk1q29d4wczmsqmp2hasvihcykybb440a6f2"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; }; - maftools = derive2 { name="maftools"; version="2.14.0"; sha256="1f1r0frikaj6aw137dk523gagkxdygg7gzc3pd303ds5cqynwiqx"; depends=[data_table DNAcopy RColorBrewer Rhtslib survival zlibbioc]; }; - magrene = derive2 { name="magrene"; version="1.0.0"; sha256="1r7pri63lwr7hkqn2wkz782sgnx1v7z0fkd5x6yim141hm1y9xii"; depends=[BiocParallel]; }; - maigesPack = derive2 { name="maigesPack"; version="1.62.0"; sha256="0bl6g2aqyq1yh6v42y8jyqxz6lprkizaxm423ll5cmmw77lh82x0"; depends=[convert graph limma marray]; }; - makecdfenv = derive2 { name="makecdfenv"; version="1.74.0"; sha256="0bvj5dg6yfjnhga1z8788zmb98d8shyz8pzz0ggnml87c1p2gy25"; depends=[affy affyio Biobase zlibbioc]; }; - mapscape = derive2 { name="mapscape"; version="1.22.0"; sha256="0an5ylv1pjgqfaj8ic35l1f4bp12lbr1h7rx2n0qwgms2wkc80zg"; depends=[base64enc htmlwidgets jsonlite stringr]; }; - marr = derive2 { name="marr"; version="1.8.0"; sha256="1v1mpqvhivirsy1f6zhb0n69zjvad5saw892psh8v5n8nyywi0kr"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; - marray = derive2 { name="marray"; version="1.76.0"; sha256="1bad4cjxv22h6vxxn86mxp7xvxhhzj81pikxq3h3hc2a858qfkgs"; depends=[limma]; }; - martini = derive2 { name="martini"; version="1.18.1"; sha256="0bxwmkax4ji8c7janfdi9k5fzilmjjv1rp2chf0d157d0qmvh2pq"; depends=[igraph Matrix memoise Rcpp RcppEigen snpStats]; }; - maser = derive2 { name="maser"; version="1.16.0"; sha256="1zycx8s046g4d3w5qrn950bmi0nrnq1g7fvqji48mr6hmsyzplvv"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; - maskBAD = derive2 { name="maskBAD"; version="1.42.0"; sha256="0mp0wcpki7nh0i5vgzv9fvqmxwb2bn9rjszk4swg4zhgh37iids5"; depends=[affy gcrma]; }; - massiR = derive2 { name="massiR"; version="1.34.0"; sha256="1dxhp4pykq9ghqsnm1ylz3j3rvyglkjpbam9ngcsqa2jj0jh5cym"; depends=[Biobase cluster diptest gplots]; }; - matchBox = derive2 { name="matchBox"; version="1.40.0"; sha256="0s7pmrbbzy87xf2596m6ix14p02dfr8db0jgx5vzidfvplh7rwsx"; depends=[]; }; - matter = derive2 { name="matter"; version="2.0.1"; sha256="0vbc6fj3is3iv2w5fdd2vdw6lr6kz3fq5d4mpg3skfcnndnb7l2j"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; }; - mbOmic = derive2 { name="mbOmic"; version="1.2.0"; sha256="01zn60gqbzq3c4nzfdk2dhj515qlill9cs5n8lba9553j0sg739q"; depends=[cluster clusterSim data_table doParallel igraph psych visNetwork WGCNA]; }; - mbkmeans = derive2 { name="mbkmeans"; version="1.14.0"; sha256="1ghv2j88p3sppqph3wxpm8z84nw7bi4idkn11wf806d8h1krfjm7"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment]; }; - mdp = derive2 { name="mdp"; version="1.18.0"; sha256="0z7d08kzqxabmd1anqa8k5rljz0mhwy1wzk5cghr770492ax9yap"; depends=[ggplot2 gridExtra]; }; - mdqc = derive2 { name="mdqc"; version="1.60.0"; sha256="1hn6m0z8q3jnzb0h8m29khgm0cx81cfs3s1j6hlg4wsrwkha1i3w"; depends=[cluster MASS]; }; - megadepth = derive2 { name="megadepth"; version="1.8.0"; sha256="1krk5iqqzkkkxfgsvi9j6mj14i2rzisrrq0xmxjsrkgfh19awhr8"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; }; - memes = derive2 { name="memes"; version="1.6.0"; sha256="0480pq3n99r6h7gvhw30j4ql259q8jq88lzjb6ik69g5xlgdrg68"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; }; - meshes = derive2 { name="meshes"; version="1.24.0"; sha256="1qdzjyh6jj8jr74xjpqdfyak0alx6n7bi3zp0sjblmlzd5mydk53"; depends=[AnnotationDbi AnnotationHub DOSE enrichplot GOSemSim MeSHDbi yulab_utils]; }; - meshr = derive2 { name="meshr"; version="2.4.0"; sha256="14kdb9wa99pb9jbsnhz86a5ajp6vwaqkkkj3x63ng0wl4pyh90lx"; depends=[BiocGenerics BiocStyle Category fdrtool knitr markdown MeSHDbi rmarkdown RSQLite S4Vectors]; }; - messina = derive2 { name="messina"; version="1.34.0"; sha256="1pa8xl98xzadzh2q8y4j446947lapxyz2aijx8xp3dv62i5cbv0p"; depends=[foreach ggplot2 plyr Rcpp survival]; }; - metaCCA = derive2 { name="metaCCA"; version="1.26.0"; sha256="1jvzp9fzggvavg4jbmmyb6cibgll0yglmc3nsfgygsh7z20yss36"; depends=[]; }; - metaMS = derive2 { name="metaMS"; version="1.34.0"; sha256="113w3zk32xg0f8ik09w8wl5zr02wmfkp05nqgp8615j7kqrnr91d"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; - metaSeq = derive2 { name="metaSeq"; version="1.38.0"; sha256="0bfsmsy1zpzrmah6y52yb3g2qy8c30s74l9w98rrisq0jfhldvdp"; depends=[NOISeq Rcpp snow]; }; - metabCombiner = derive2 { name="metabCombiner"; version="1.8.0"; sha256="1s9vccbd2abaz2dsg7gm0amdvwb5iildz0pavfhhssl0np07h9rf"; depends=[caret dplyr matrixStats mgcv rlang S4Vectors tidyr]; }; - metabinR = derive2 { name="metabinR"; version="1.0.0"; sha256="1qyy2l5y18v1jg54lk7sv9f1wcmrzbff4yk921m9gn4jcxdn59l9"; depends=[rJava]; }; - metabolomicsWorkbenchR = derive2 { name="metabolomicsWorkbenchR"; version="1.8.0"; sha256="02azijq6hq4141zh8nls1xg5h1hlgyb130b6l47966pn1drm5q9l"; depends=[data_table httr jsonlite MultiAssayExperiment struct SummarizedExperiment]; }; - metabomxtr = derive2 { name="metabomxtr"; version="1.32.0"; sha256="0b01h0dd1hnlnx89i347rca032lk48d49xfb03r15di1gcwwrw5q"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; - metagene = derive2 { name="metagene"; version="2.30.0"; sha256="09z4hgcp7lnybv4hq2dybc8zq6mwndls7p8y30lzb6rw2fryhkhq"; depends=[BiocParallel data_table EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats purrr R6 Rsamtools rtracklayer stringr]; }; - metagene2 = derive2 { name="metagene2"; version="1.14.0"; sha256="12knh4bri4j5sf12wf129kg484xbc37hkfkyw39rkz2arx465giw"; depends=[BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; }; - metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.40.0"; sha256="01wjw4kcm8ysa5sn3cqg4a9i5pyksnwmbdqp5fr6n2l9hllkc9jy"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; }; - metahdep = derive2 { name="metahdep"; version="1.56.0"; sha256="1fyphlk6v5va7yr7ihb4yman0sd3jywscqx6an6zv1jkwvp9hpd1"; depends=[]; }; - metapod = derive2 { name="metapod"; version="1.6.0"; sha256="06ala1qz9bfq7nnj92m0c5r85kk7h4zrljjh0hgrap5sjlsm09bb"; depends=[Rcpp]; }; - metapone = derive2 { name="metapone"; version="1.4.0"; sha256="13fnh1n2ydykkvpj9s9xvikfgahsi827rmwzb4zyk9h2g4dx5jk2"; depends=[BiocParallel fdrtool fgsea fields ggplot2 ggrepel markdown]; }; - metaseqR2 = derive2 { name="metaseqR2"; version="1.10.0"; sha256="0m5dyg0gsvif02mgz0mcdk8annmqy4a6s5ldk3d9hjjzcgchpkpv"; depends=[ABSSeq baySeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn yaml zoo]; }; - metavizr = derive2 { name="metavizr"; version="1.21.0"; sha256="1d88f854sn5m2pklsyvkmq05yzjanxlnkz5gpzban62qq1mpvims"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; - methInheritSim = derive2 { name="methInheritSim"; version="1.20.0"; sha256="1mkh8j1kccc95r1xj77hkpal0zdj0g923p8xr7vm1rxz98fpw30n"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; - methimpute = derive2 { name="methimpute"; version="1.20.0"; sha256="0pksjz8i42wvg830rlwyfk5wv0mymnxpv65swjgbkxhd1hx0s1nf"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; - methrix = derive2 { name="methrix"; version="1.12.0"; sha256="08p6zq9pbqa21awgm7qfxwb81600i9c1af536zwp4a8fqn7vphhs"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array IRanges matrixStats rtracklayer SummarizedExperiment]; }; - methylCC = derive2 { name="methylCC"; version="1.12.0"; sha256="0m0zs1nj2xmslfj35khmyy5nzrq49q5mpyv9ymq07wja54qpxx5l"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; }; - methylGSA = derive2 { name="methylGSA"; version="1.16.0"; sha256="1xzgv5r62pbn9y7bc2rih5073n4qzx9fhkvja2pr0irlx2jr4arm"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; }; - methylInheritance = derive2 { name="methylInheritance"; version="1.22.0"; sha256="0rf6gw8b4v20q9lhzgxskyxga9iszfgdvgdhs53x0xkfa2sagddr"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; - methylKit = derive2 { name="methylKit"; version="1.24.0"; sha256="0w6wv8x1jggbvymb07b2z47myf239mwpwbgz5p5yi60qb0k7p2q9"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; - methylMnM = derive2 { name="methylMnM"; version="1.36.0"; sha256="0mj34ch1k216k42qj9wyf5yshl1qjb6hvpxs5y2rk21w6dwziklk"; depends=[edgeR statmod]; }; - methylPipe = derive2 { name="methylPipe"; version="1.32.0"; sha256="1za6f3y5mfgk8pfsv487q1xbigrv85vs0q1j71zcbc3lminsfzyp"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; - methylSig = derive2 { name="methylSig"; version="1.10.0"; sha256="1yg9lkgqgdlb5d8wiprnilw4nmwgq1nsz2p8v5zm09sfyvkl05gx"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - methylclock = derive2 { name="methylclock"; version="1.4.0"; sha256="0pzpxdm3z6payp5mh45a939zk4kqg08rkm4c96ryd2j7a4yvk55q"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr gridExtra impute methylclockData minfi PerformanceAnalytics planet preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; - methylscaper = derive2 { name="methylscaper"; version="1.6.0"; sha256="08lrc54safmb9ygg4vpqjfn5ycps19j7gbgi3rjcjzc7qv6zgjwp"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; - methylumi = derive2 { name="methylumi"; version="2.44.0"; sha256="07kfyv3kkayzh0akxfl3p9gckw8qiplkxbyxw8npc7cb03ihgmc4"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; - mfa = derive2 { name="mfa"; version="1.20.0"; sha256="0xrgl1nzyvwm34249ijw0ld4dkz0001ck8cv780yx2dk92lp9ky2"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; - mgsa = derive2 { name="mgsa"; version="1.46.0"; sha256="1h559i80hd8ajvimj3qs9c2yayl4cz8kr7irn4184wcql61dq5md"; depends=[gplots]; }; - miQC = derive2 { name="miQC"; version="1.6.0"; sha256="1fy4iqm5frmnrlmcpikhrvr59hv2cbsrgrn6xkcq9jxcwnm7zxnz"; depends=[flexmix ggplot2 SingleCellExperiment]; }; - miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.22.0"; sha256="1srx066gsqcngngjpac29wnqf4n5r297h5wbbgjdvkkvyc7fhvwy"; depends=[]; }; - miRLAB = derive2 { name="miRLAB"; version="1.28.0"; sha256="1fj8vgwym7w65z84w043v75j0cn6nb882sk91mdmp1q0xwmn4jq0"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl stringr SummarizedExperiment TCGAbiolinks]; }; - miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.26.0"; sha256="0wvz9gz7zh5qzf146hz788rc289mb22bi78ffjh8xmyfhc3jxmpj"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; - miRNApath = derive2 { name="miRNApath"; version="1.58.0"; sha256="0h6q3p29pvzfk8ggb97akbh0lmawypwp9rs4bmnj52599ws4x3n1"; depends=[]; }; - miRNAtap = derive2 { name="miRNAtap"; version="1.32.0"; sha256="05pxcqaw7hkfchmy8m6ywrblh3kj2zwargrw1v969af24lgaa3fa"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; - miRSM = derive2 { name="miRSM"; version="1.16.0"; sha256="153bdgwkqkcidvracjwxa249j6nl2fbsdg9wabnjd67qph8sa8rn"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; }; - miRcomp = derive2 { name="miRcomp"; version="1.28.0"; sha256="1xnw6gv6h0b7fzmcirwdkp6hn33wc8k1dify5xy6r17sgfy51xm9"; depends=[Biobase KernSmooth miRcompData]; }; - miRmine = derive2 { name="miRmine"; version="1.20.0"; sha256="1mn9cjx6hqgqsmjg3rjkdyfs0d4ji12k5s2mw2rc87bwcl3d0rai"; depends=[SummarizedExperiment]; }; - miRspongeR = derive2 { name="miRspongeR"; version="2.2.0"; sha256="0nm4zzwpl4xzrc2v3br7963w2mfmlsg32pr4j4qqf090gjqj2k3k"; depends=[clusterProfiler corpcor doParallel DOSE foreach igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA SPONGE survival]; }; - mia = derive2 { name="mia"; version="1.6.0"; sha256="0yz88ggv6d5rccdwzixwg9y1bc4xysazlmv1ph88wxs8r6fcmync"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; - miaSim = derive2 { name="miaSim"; version="1.4.0"; sha256="01rvvjm6q1b7pdi89jvlhiqv70rms128f08frhvfxj6m4wr432hj"; depends=[deSolve gtools MatrixGenerics poweRlaw S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; - miaViz = derive2 { name="miaViz"; version="1.6.0"; sha256="18gp77islzfy1ll7yxk3l8l1q8kj4hxj0qns6mk9i0pb1vqs1lk7"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; - microRNA = derive2 { name="microRNA"; version="1.56.0"; sha256="002wagng2zqa2cl8140im2fzbic6mqr2mp6qbaqk5ary5m8c0bkq"; depends=[Biostrings]; }; - microbiome = derive2 { name="microbiome"; version="1.20.0"; sha256="1j3lrrz6yxfzsr037c0bbdhrs0ll7jg0mpcvk3iqdryi5rysnx0x"; depends=[Biostrings compositions dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; - microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.12.0"; sha256="0gfldxhrz70drr9g4g1bpk0ncazldyc32z9by0ri881hyqah3d9x"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; - microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.8.0"; sha256="1y9n12vmqr1l7c33smfl0wm33nzww84593y6azbhyj0sl50gk4a2"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; - microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.4.0"; sha256="022hzblxs2b3vlj3d9xicqyap8gr5r0dk29wz2n09d759aawc0nr"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics BiocParallel biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC pROC purrr rlang S4Vectors tibble tidyr tidytree vegan yaml]; }; - midasHLA = derive2 { name="midasHLA"; version="1.6.0"; sha256="0j4sw8vbkksgm4g2wlzyanvmin7izv7209kqk3nnyx1g2crgh5ki"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; - miloR = derive2 { name="miloR"; version="1.6.0"; sha256="07p9rs1jmgxqaahjbrnvvs94c142n2qfw8ip3qqkr6mhzwr19ly3"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; - mimager = derive2 { name="mimager"; version="1.22.0"; sha256="1q11i2k78nk8nga0sy4zps86i5n650km8v9h4yz12k12akwwp156"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; - mina = derive2 { name="mina"; version="1.6.0"; sha256="0w2m191lxy34c22qbds00g4advczzic4rvq6g78lmbpmf8xzj5sx"; depends=[apcluster biganalytics bigmemory foreach ggplot2 Hmisc MCL parallelDist plyr Rcpp RcppArmadillo RcppParallel reshape2 RSpectra stringr]; }; - minet = derive2 { name="minet"; version="3.56.0"; sha256="1xknyc2m03dyqrnx6np2y2lr41w06arl114f6cncl6wsnanqxzrz"; depends=[infotheo]; }; - minfi = derive2 { name="minfi"; version="1.44.0"; sha256="15989zilgy2j4k4nw046qg8wli7ynjh2b1yzfv7cwgn87mp618lc"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; - mirIntegrator = derive2 { name="mirIntegrator"; version="1.28.0"; sha256="0662jsrw745973kf3f95l3n6i5s9h2nk2ap6alv8sb5rkykva2in"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; - mirTarRnaSeq = derive2 { name="mirTarRnaSeq"; version="1.6.0"; sha256="07lfh8c7ks9lbnskvqjhjrssp0wk1kpp7mbh7c7cg6q1kxcxpqyx"; depends=[assertthat caTools corrplot data_table dplyr ggplot2 MASS pheatmap pscl purrr R_utils reshape2]; }; - missMethyl = derive2 { name="missMethyl"; version="1.32.1"; sha256="1rrm8m68kgjkrw1wdli5lrwqlavhbm490zgnj5vafzpvx7xajfma"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; }; - missRows = derive2 { name="missRows"; version="1.18.0"; sha256="0kwbmhz80an07fcp6skv4bik0ncszxcllfi7jv9h0k814qciij0y"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; - mistyR = derive2 { name="mistyR"; version="1.6.1"; sha256="0kcqcr1bmmhxngmygr64ca5kl8gsc7z9qwq2ivcc97f78xs3p6p8"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 purrr R_utils ranger readr ridge rlang rlist stringr tibble tidyr tidyselect withr]; }; - mitch = derive2 { name="mitch"; version="1.10.0"; sha256="174hiq8xzbvdkfxdgm742sjs7qcmnkb9shcid1p8x8ci6fk9vs61"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra knitr MASS plyr reshape2 rmarkdown]; }; - mitoClone2 = derive2 { name="mitoClone2"; version="1.4.0"; sha256="07yi1pz05na7w4ppp0kcrylny4p1ca9w1rxwmph70i81paf5kpfn"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; }; - mixOmics = derive2 { name="mixOmics"; version="6.22.0"; sha256="0w6shihvnvkjycba1hy8drd8wcxxcl2rimkrb4vdl8aygdifrarx"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; - mnem = derive2 { name="mnem"; version="1.14.0"; sha256="1midn7hqi037fwk3pxrzlc0a7fgs0ylxpd312ghjb45g1anxdc0s"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; - moanin = derive2 { name="moanin"; version="1.6.0"; sha256="0cj9ym1iw4xpc9nmswhv9pnd2yr5mqmjzs43y7dd0c6x5nq90l13"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; - mogsa = derive2 { name="mogsa"; version="1.32.0"; sha256="1qr8ncs2993pz80idbz2paappn0pw0akjv25zkqc084bm74q0qb9"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; - monaLisa = derive2 { name="monaLisa"; version="1.4.0"; sha256="1hljdgb7cjhcjvjl4ffwjsn0har7p7rhg07320575s738pzm3wj3"; depends=[BiocGenerics BiocParallel Biostrings BSgenome circlize ComplexHeatmap GenomeInfoDb GenomicRanges glmnet IRanges S4Vectors stabs SummarizedExperiment TFBSTools vioplot XVector]; }; - monocle = derive2 { name="monocle"; version="2.26.0"; sha256="1d3xgh9xgqa28bgyd06zkjmg75lq7hdah3d140l1bqq2ii1bv62g"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree dplyr fastICA ggplot2 HSMMSingleCell igraph irlba leidenbase limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; - mosaics = derive2 { name="mosaics"; version="2.36.0"; sha256="146fwpzmri7rlz1rq92xh70wrvmbfa5ysa6gv1akajbchgnrmikq"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; - mosbi = derive2 { name="mosbi"; version="1.4.0"; sha256="04fdphz8jcmpxql9v496r7xikqhcbm1kn8a9j6hav9z4w8slg31l"; depends=[akmbiclust BH biclust fabia igraph isa2 QUBIC RColorBrewer Rcpp RcppParallel xml2]; }; - motifStack = derive2 { name="motifStack"; version="1.42.0"; sha256="18gfx5dq83s2ny39a7cgg4r3b05gg9l0kfg83brwrm1cby08jdhm"; depends=[ade4 Biostrings ggplot2 htmlwidgets TFBSTools XML]; }; - motifbreakR = derive2 { name="motifbreakR"; version="2.12.3"; sha256="073xv26yaksqa0j2vyqf8ak5yqsxg5s86izdlmlwdidnxdnd16si"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; - motifcounter = derive2 { name="motifcounter"; version="1.22.0"; sha256="0vsjnp19c8wscb3n2wkqvmssx052fr8wcfb6y67393mq1pqa719m"; depends=[Biostrings]; }; - motifmatchr = derive2 { name="motifmatchr"; version="1.20.0"; sha256="01k2ngf4nj2cazb3a2c96by86xwdkdngzwhb73n2wadibamnqnfv"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; - mpra = derive2 { name="mpra"; version="1.20.0"; sha256="04pqnpsdak6yqmd99bfkild15s6szlwy86dxlnbd1fxvpyarfnf9"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; - msImpute = derive2 { name="msImpute"; version="1.8.0"; sha256="0mlybbrs6k5z41lhd3pvmvakqd1d1pkrvf0jkrbdwzs9grb5d4nn"; depends=[data_table dplyr FNN limma matrixStats mvtnorm pdist reticulate scran softImpute tidyr]; }; - msPurity = derive2 { name="msPurity"; version="1.24.0"; sha256="1w998i5lv1c2485cmdzk31inykhl64s7njaj725cs1r3gzi4l7h4"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 magrittr mzR plyr Rcpp reshape2 RSQLite stringr]; }; - msa = derive2 { name="msa"; version="1.30.1"; sha256="064hmry0zhmpchxgjsw0krsybr9v9gbsz26zmj2a39pg1nggwbq4"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; - msgbsR = derive2 { name="msgbsR"; version="1.22.0"; sha256="0g6d0gx5af61svxjdzx438vz24sd81qml7f755kq8nrr89pacvh0"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; - mslp = derive2 { name="mslp"; version="1.0.2"; sha256="0sv6a9vjrgi4cd2mvb88jvr8wdwf6hr3570zpq3w3072m8m8gj4v"; depends=[data_table doRNG fmsb foreach magrittr org_Hs_eg_db pROC randomForest RankProd]; }; - msmsEDA = derive2 { name="msmsEDA"; version="1.36.0"; sha256="17xklsg483zd205q5hyxy6b3cgrb53pplb1wc7pmv5638y7nsq2v"; depends=[gplots MASS MSnbase RColorBrewer]; }; - msmsTests = derive2 { name="msmsTests"; version="1.36.0"; sha256="10frsvqhi3i0v2w4q4q9xz1ykyf6s3nrjlmn94x3kd06p3s839k3"; depends=[edgeR msmsEDA MSnbase qvalue]; }; - msqrob2 = derive2 { name="msqrob2"; version="1.6.1"; sha256="1cv7i2n8a470jzpldlwyrx12d8my2al2522vilyyfr9j74xgi0ln"; depends=[BiocParallel codetools limma lme4 MASS Matrix MultiAssayExperiment purrr QFeatures SummarizedExperiment]; }; - multiClust = derive2 { name="multiClust"; version="1.28.0"; sha256="0mw48jm154c0k9nhal56xc4jv0n3ms0s1770g2i2lxkr37905swq"; depends=[amap cluster ctc dendextend mclust survival]; }; - multiGSEA = derive2 { name="multiGSEA"; version="1.8.2"; sha256="1s8rdrzpvnscdisv1ld31aiv5vbddvr7f523sc9ngv2nsmisxdq8"; depends=[AnnotationDbi dplyr fgsea graphite magrittr metap rappdirs rlang]; }; - multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.16.0"; sha256="0mwb61c6yqq1frnsgp3nafmlrl1zi8sxckp5yw7z083805y3fbyr"; depends=[aggregation BiocParallel data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare pbapply pheatmap qqman]; }; - multiMiR = derive2 { name="multiMiR"; version="1.20.0"; sha256="1zfjr1cw1qpi70wxrkw32y3dmwhbsdzd2522cgkj4x97g4d5cn99"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; - multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.22.0"; sha256="0g28ksb9vf2lpv15s9s64nnz6smhxrf9cbsw4kba0dlyrrzzha4a"; depends=[doParallel foreach SummarizedExperiment]; }; - multiSight = derive2 { name="multiSight"; version="1.6.0"; sha256="1rpikqpg6y2dzgfb3wz92cf45kbvcd4izybkil54gls7wvq0a79i"; depends=[anyLib biosigner caret clusterProfiler config DESeq2 dplyr DT easyPubMed enrichplot ggnewscale golem htmltools igraph infotheo metap mixOmics networkD3 ppcor R6 ReactomePA rmarkdown rWikiPathways shiny shinydashboard stringr]; }; - multicrispr = derive2 { name="multicrispr"; version="1.8.0"; sha256="17b2c387f7xb8gcsbxqks9j7jr2yi1hysrjdl1vqxzwlzzz7v4az"; depends=[assertive BiocGenerics Biostrings BSgenome CRISPRseek data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 karyoploteR magrittr plyranges Rbowtie reticulate rtracklayer stringi tidyr tidyselect]; }; - multiscan = derive2 { name="multiscan"; version="1.58.0"; sha256="1fj9fap9nz3cr9hvdhjnw4qbv684vsqjaf29sjcjvsay5f919gfy"; depends=[Biobase]; }; - multtest = derive2 { name="multtest"; version="2.54.0"; sha256="0ciz0fl0pzm4hjqw8af32s540lwjbkwvwnzgbfwadax40hgjs0g7"; depends=[Biobase BiocGenerics MASS survival]; }; - mumosa = derive2 { name="mumosa"; version="1.6.0"; sha256="0g0597dlzc1z4giq3qn9cy9hm1fywf5qv33lnac4zwb2hvg4qc42"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; }; - muscat = derive2 { name="muscat"; version="1.12.1"; sha256="061dgs3ygvr4vrc6mrmikqn4a7a5qajn7k8crbskdkg4svg8qv1a"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; - muscle = derive2 { name="muscle"; version="3.40.0"; sha256="14dqhmvfdcm8fn27ih5q654rla4qgikj4761lhhnhzyvhqvnmglk"; depends=[Biostrings]; }; - musicatk = derive2 { name="musicatk"; version="1.8.0"; sha256="1l45jkhjciwvpy86c5ql3j6s8cm4d8crwdp45gj01xl23x1gkdgf"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap cowplot data_table decompTumor2Sig deconstructSigs dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra gtools IRanges maftools magrittr MASS matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors shiny shinyalert shinyBS shinybusy shinydashboard shinyjqui shinyjs sortable stringi stringr SummarizedExperiment TCGAbiolinks tibble tidyr topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation withr]; }; - mygene = derive2 { name="mygene"; version="1.34.0"; sha256="1aldf0x5vivjbhp169chg5k3fq5r41fiykxii8f7z580h3spmapm"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; - myvariant = derive2 { name="myvariant"; version="1.28.0"; sha256="14p8x89ff9j4qzq4mghnxiwk6hac22hrq0zsvj2918srmwx18cjr"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; - mzID = derive2 { name="mzID"; version="1.36.0"; sha256="0h5w5ykbziaif6m61pa5x92f2rblfgldvj9vajfhkmxj1b2ks9za"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; - mzR = derive2 { name="mzR"; version="2.32.0"; sha256="0p7mkvvaf25si95lpwpr65jm3dzxmgs9i0wilyb2mbxkdcz9vm71"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib]; }; - nanotatoR = derive2 { name="nanotatoR"; version="1.14.0"; sha256="1lb9jn0wi1rn3dcgc5b5fg3xvpm8dcws3ryxb29nvxjhiy7ry90z"; depends=[AnnotationDbi curl dplyr GenomicRanges hash httr knitr openxlsx org_Hs_eg_db rentrez rlang stringr testthat tidyverse VarfromPDB XML XML2R]; }; - ncGTW = derive2 { name="ncGTW"; version="1.12.0"; sha256="0jxchaq442kmprz65pv43xjj4cwv29aq28jz8l3ih70k873g8ap9"; depends=[BiocParallel Rcpp xcms]; }; - ncRNAtools = derive2 { name="ncRNAtools"; version="1.8.0"; sha256="0mbf3x2bf1qk2y7a0xjyvlj591b5dcl51f21vvkb0ikdm3bjiqz5"; depends=[GenomicRanges ggplot2 httr IRanges S4Vectors xml2]; }; - ncdfFlow = derive2 { name="ncdfFlow"; version="2.44.0"; sha256="0ak1rrd0r899nz4zdg9v3pkvlp94sbcc3q6xl249krgbx0a3sizm"; depends=[BH Biobase BiocGenerics cpp11 flowCore Rhdf5lib zlibbioc]; }; - ndexr = derive2 { name="ndexr"; version="1.20.1"; sha256="0m6p9h431xdb0r6q1xsqkdmm7cwrpdizlcisz30dl6f7nlm5pjyv"; depends=[httr jsonlite plyr RCX tidyr]; }; - nearBynding = derive2 { name="nearBynding"; version="1.8.0"; sha256="17fwk2863jb0y980y7f1in04x8529is6bvr2bymnsg7kkk1spvv6"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges ggplot2 gplots magrittr matrixStats plyranges R_utils rlang Rsamtools rtracklayer S4Vectors transport TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - nempi = derive2 { name="nempi"; version="1.6.0"; sha256="0x15n5k9jbimg6rljj028dnmnymj9g8ylrds58sa7yxpp0aa9gyl"; depends=[e1071 epiNEM matrixStats mnem naturalsort nnet randomForest]; }; - netDx = derive2 { name="netDx"; version="1.9.0"; sha256="1k6grq4gxr507m43x1srszbic4chvj9qba52h6gdgmpmimfyg5bm"; depends=[bigmemory BiocFileCache combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet httr igraph IRanges MultiAssayExperiment plotrix pracma rappdirs RColorBrewer reshape2 ROCR Rtsne S4Vectors]; }; - netOmics = derive2 { name="netOmics"; version="1.4.0"; sha256="0fpnydck4vqly14y718bm823b5lxn71k1df60vjfcg9ymxk8qz5z"; depends=[AnnotationDbi dplyr ggplot2 GO_db gprofiler2 igraph magrittr minet purrr RandomWalkRestartMH tibble tidyr]; }; - netSmooth = derive2 { name="netSmooth"; version="1.18.0"; sha256="1vivvzv4bl0i5y7mg1dm1rp87vch3k6byrapif3nwzj02f2fwriq"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; }; - netZooR = derive2 { name="netZooR"; version="1.2.0"; sha256="00drgnk8fvjfsbmlj8nh20yvly4z0a0xfsxxcany2kygi8r1yq7h"; depends=[AnnotationDbi assertthat Biobase data_table doParallel dplyr foreach ggdendro ggplot2 GO_db GOstats gplots igraph MASS Matrix matrixStats nnet org_Hs_eg_db pandaR penalized RCy3 reshape reshape2 reticulate STRINGdb tidyr vegan viridisLite yarn]; }; - netbiov = derive2 { name="netbiov"; version="1.31.0"; sha256="0ldpbq8d7hq6sa5qcc5qh23plczg35170v3fifyz6a47vghr5ff9"; depends=[igraph]; }; - netboost = derive2 { name="netboost"; version="2.6.1"; sha256="0w5gbvzmzm2pg045vrddpzqjb1i191cy0mga7k8iyg3vfq7nvb81"; depends=[colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; }; - netboxr = derive2 { name="netboxr"; version="1.9.0"; sha256="1brnm60745s2axls4p6qcxipjjr3ph9ijg1q604fgm42rf6i7qzm"; depends=[clusterProfiler data_table DT gplots igraph jsonlite plyr RColorBrewer]; }; - nethet = derive2 { name="nethet"; version="1.30.0"; sha256="0dhyjphj0134kx91ny94g0yd6kbjxb5qlbrds2z31bgxcxpms9gb"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; }; - netprioR = derive2 { name="netprioR"; version="1.24.0"; sha256="18cmg460hqygxxdsq3d4ns9aqbvj5knh9lv1d45fd3k1k9fhvsql"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; - netresponse = derive2 { name="netresponse"; version="1.58.0"; sha256="1d1285sgk86yi4sc93dhyizzs1a6333z6kcmpk3a7ki6z27a3jjk"; depends=[BiocStyle ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz rmarkdown]; }; - ngsReports = derive2 { name="ngsReports"; version="2.0.3"; sha256="0kngch6vkhd9gr5a6f0d9r8rkphlp7s7a8m6ssd55qnmr4xcvw2a"; depends=[BiocGenerics Biostrings checkmate dplyr DT forcats ggdendro ggplot2 lifecycle lubridate pander patchwork plotly readr reshape2 rlang rmarkdown scales stringr tibble tidyr tidyselect zoo]; }; - nnNorm = derive2 { name="nnNorm"; version="2.62.0"; sha256="0n01vsqhr9pgsyijvlp9k89l7yzs99f4xi1p7i5zmiffd39p013d"; depends=[marray nnet]; }; - nnSVG = derive2 { name="nnSVG"; version="1.2.0"; sha256="1mxsii17msqww37q5zgfmdyd6sv00mn1yz44lqkaa7pbldyhhixk"; depends=[BiocParallel BRISC Matrix matrixStats SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - nondetects = derive2 { name="nondetects"; version="2.28.0"; sha256="0n1ikrxz6gr27i86vv0j7x8m63rwl07wn72jzn4p4h1j46fzqdvp"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; - normalize450K = derive2 { name="normalize450K"; version="1.26.0"; sha256="1a9q6dwkqg2s5q29rpx9lvhws8hnzdjc8dk6c56mh1q02gpxz8v3"; depends=[Biobase illuminaio quadprog]; }; - normr = derive2 { name="normr"; version="1.24.0"; sha256="1vx9v22am8vc5r9fml1nblm2x64zrifsqxlav9y0af4mbpd76d34"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; - npGSEA = derive2 { name="npGSEA"; version="1.34.0"; sha256="014w7f95h44da6c7kwsddzp3wjbfyy3f697wykgz659hv86zdx0h"; depends=[Biobase BiocGenerics GSEABase]; }; - nuCpos = derive2 { name="nuCpos"; version="1.16.3"; sha256="14anlg6a7b3qw2k39q273p5396v3nqlask0gz92h170z24gjyc1s"; depends=[]; }; - nucleR = derive2 { name="nucleR"; version="2.30.0"; sha256="0j8g0lf6pzqzak259fp6xckgcjrabqgd28bwy9fbx3pd1qj5yrh0"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; - nucleoSim = derive2 { name="nucleoSim"; version="1.26.0"; sha256="0cgljwk9car3s5ncslx0j0bya6hchfv1zk09q8r0y6258mim4qy6"; depends=[IRanges S4Vectors]; }; - nullranges = derive2 { name="nullranges"; version="1.4.0"; sha256="01f7x99nzgi0si02p5bsjvf0mybl52kxnkm2j1f1s2rai5srkca4"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges ks plyranges progress rlang S4Vectors scales]; }; - occugene = derive2 { name="occugene"; version="1.58.0"; sha256="13hv71w25jzlf0fs5wx400m1zh4l4vxlvv42vidiyggj894ky5a3"; depends=[]; }; - octad = derive2 { name="octad"; version="1.0.0"; sha256="0qa407rhi9z1n2hif40j27vbfsy222wi2hh26qn4s0s7f2fnfyfl"; depends=[AnnotationHub Biobase data_table DESeq2 dplyr EDASeq edgeR ExperimentHub foreach ggplot2 GSVA htmlwidgets httr limma magrittr octad_db plotly reshape2 Rfast rhdf5 RUVSeq S4Vectors]; }; - odseq = derive2 { name="odseq"; version="1.26.0"; sha256="0p51lay3xasqg55j99gdx1gpk93p4m2czvbw912h559v2s4hnzqq"; depends=[kebabs mclust msa]; }; - oligo = derive2 { name="oligo"; version="1.62.2"; sha256="19n0nvgyv2hzzcla93w2bzxvfdqg6walh0s1yykwl5b7ni4cazg9"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; - oligoClasses = derive2 { name="oligoClasses"; version="1.60.0"; sha256="1ik9xfx6g4gf54hm5f5prip1iz6694czpbhlgwd3p9qh8ddndgp8"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; - omada = derive2 { name="omada"; version="1.0.0"; sha256="1p9nywbh81d91cah8in5aa4say3zd9159f266k8qbk1psy93zz07"; depends=[clValid diceR dplyr fpc ggplot2 glmnet kernlab pdfCluster Rcpp reshape]; }; - omicRexposome = derive2 { name="omicRexposome"; version="1.20.0"; sha256="13xgp6hnn9py8400k1411fyzlxskdlams2x0p7skn44219iqpqwj"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; - omicade4 = derive2 { name="omicade4"; version="1.38.0"; sha256="1w9fsg0r6ir9nmmpf08b1mh8mnrzxk3f398y1w5dg34fdz4phgpg"; depends=[ade4 Biobase made4]; }; - omicplotR = derive2 { name="omicplotR"; version="1.18.0"; sha256="1h3r0lhkaqhl6cc05m4qjwl3hyz8ayig6xmj1jqi1kcm291js54c"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; }; - omicsPrint = derive2 { name="omicsPrint"; version="1.18.0"; sha256="0zjidzy0nd9pb8f704xasm2nindaz953pmmv86c9fq0dmcv63wz4"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; - omicsViewer = derive2 { name="omicsViewer"; version="1.2.0"; sha256="1di3wyf6nzl39shbqmcxjr2kxmn7gghh0z977ax6lfzzwmqvqgzr"; depends=[beeswarm Biobase curl DT fastmatch fgsea flatxml ggplot2 ggseqlogo htmlwidgets httr Matrix matrixStats networkD3 openxlsx plotly psych RColorBrewer reshape2 RSQLite S4Vectors shiny shinybusy shinycssloaders shinyjs shinythemes shinyWidgets stringr SummarizedExperiment survival survminer]; }; - ompBAM = derive2 { name="ompBAM"; version="1.2.0"; sha256="0kfym9xlhjqrlcdzpvl0533f7pgyffgb4adwda6wiyq3mbyag5l6"; depends=[Rcpp zlibbioc]; }; - oncomix = derive2 { name="oncomix"; version="1.20.0"; sha256="0mdjyq2awrvh0r5sivb5zk0zg13100am8dd6r2bvw8nhn1ns5xby"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; - oncoscanR = derive2 { name="oncoscanR"; version="1.0.0"; sha256="05rnw08rc9x65rgkw553szjjwqx0b9i6brg7hc0x8r180il22z9k"; depends=[GenomicRanges IRanges magrittr readr S4Vectors]; }; - oneSENSE = derive2 { name="oneSENSE"; version="1.20.0"; sha256="1lzb8i3frv3va2q28glwnjwszrynhky5y8fx10q4h52p2wqgc4v3"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; - onlineFDR = derive2 { name="onlineFDR"; version="2.6.0"; sha256="0a66qyhd22vkn58m844fm8y22pv5s52r2hivvq0d9sqns7f8q286"; depends=[progress Rcpp RcppProgress]; }; - ontoProc = derive2 { name="ontoProc"; version="1.20.0"; sha256="1p7849msd9181f3y20n67rac5dbbq5a7z9cggw8y4yh4a9zjz4r0"; depends=[AnnotationHub Biobase BiocFileCache dplyr DT graph igraph magrittr ontologyIndex ontologyPlot Rgraphviz S4Vectors shiny SummarizedExperiment]; }; - openCyto = derive2 { name="openCyto"; version="2.10.1"; sha256="16wsa9dhnz8gz1siyhfxvnbfg142g7fmhxiqxr7n69qpq9w8yhr0"; depends=[BH Biobase BiocGenerics cpp11 data_table flowClust flowCore flowViz flowWorkspace graph ncdfFlow RBGL RColorBrewer]; }; - openPrimeR = derive2 { name="openPrimeR"; version="1.20.0"; sha256="0vc9fj4qz741px820m4yzl0nmfszb9pp8jz0mgm0bn8rypibhs1c"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; - openPrimeRui = derive2 { name="openPrimeRui"; version="1.20.0"; sha256="0m98qwpb84bs0qfk17ibbxkjnknnqlkb21hmhqkjnd3hxrk615zc"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; - oposSOM = derive2 { name="oposSOM"; version="2.16.0"; sha256="0czk9bgi381vxa4n8hqamsq7aih26xi8wg3j8c1f2wlxhg6ha5ka"; depends=[ape Biobase biomaRt fastICA fdrtool graph igraph pixmap png Rcpp RcppParallel RCurl scatterplot3d tsne XML]; }; - oppar = derive2 { name="oppar"; version="1.26.0"; sha256="1ikivqi8dw8dsfbv115g79j7pkk37dxw2bwfdk0bmn0y1qnwr60l"; depends=[Biobase GSEABase GSVA]; }; - oppti = derive2 { name="oppti"; version="1.12.0"; sha256="0v3fahv6miy3zgaypmnp1f1b84l5zz3s3spimhxl1jbm26safj13"; depends=[devtools ggplot2 knitr limma parallelDist pheatmap RColorBrewer reshape]; }; - optimalFlow = derive2 { name="optimalFlow"; version="1.10.0"; sha256="1g47mw0i2gn08f4j7fb190jgb5ap02vaxgs615wnihrnljsihiky"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; }; - orthogene = derive2 { name="orthogene"; version="1.4.1"; sha256="1bg73n1z0v5py2w5rdvy49793v4l820fwrjd7gsdi8vf5z06hq52"; depends=[babelgene data_table DelayedArray dplyr ggplot2 ggpubr ggtree gprofiler2 grr homologene jsonlite Matrix patchwork repmis]; }; - pRoloc = derive2 { name="pRoloc"; version="1.38.2"; sha256="1q4mhqr49h49alydsbzvakdmk9xd6g98spblzzzrwzdh1qh87zsi"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; - pRolocGUI = derive2 { name="pRolocGUI"; version="2.8.0"; sha256="0s6pyim5b3qm12ig8amkrf0r5clpk6021b08iw9jfc60qg68hmr2"; depends=[Biobase BiocGenerics colorspace colourpicker dplyr DT ggplot2 MSnbase pRoloc scales shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets]; }; - packFinder = derive2 { name="packFinder"; version="1.10.0"; sha256="1vg5pmra6l75qx8q4pcvfxiz8rcagh9syca5r5xbzi1gwrj4mgvs"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; }; - padma = derive2 { name="padma"; version="1.8.0"; sha256="02i67ck4wnb7jp88bwnx763ijk7ayk69jrr0n0vzfgr408zvv4ir"; depends=[FactoMineR MultiAssayExperiment S4Vectors SummarizedExperiment]; }; - pageRank = derive2 { name="pageRank"; version="1.8.0"; sha256="00irmzaj7d2hdyc3lf1n2rpl7adsff4hjxxxc0ln1h2lbwhzbm90"; depends=[GenomicRanges igraph motifmatchr]; }; - paircompviz = derive2 { name="paircompviz"; version="1.36.0"; sha256="1nrxn494is198j1yc3janhf8d1vh772k5k5x3qfs75wcz1vwcihh"; depends=[Rgraphviz]; }; - pairkat = derive2 { name="pairkat"; version="1.4.0"; sha256="19z3ymlm93rl9fqcax9m4l7hayqp4vm38lcw9kk3k9pya2yrv8ry"; depends=[CompQuadForm data_table igraph KEGGREST magrittr SummarizedExperiment tibble]; }; - pandaR = derive2 { name="pandaR"; version="1.30.0"; sha256="057hcmgzcp15l8ylgw1rjh5vldsdz6wvf78q3j2m32iw2xrma262"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; - panelcn_mops = derive2 { name="panelcn.mops"; version="1.20.0"; sha256="1wr6sxky839plyshd4yqfsj08v1vqfk0g1z0wbb645n8cn43zawn"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - panp = derive2 { name="panp"; version="1.68.0"; sha256="17jci5fikyjwkd9h9rysiag8zkzckw3w0z3rxkv6gvazlmiqnyrn"; depends=[affy Biobase]; }; - pareg = derive2 { name="pareg"; version="1.2.0"; sha256="1b5ymhnznjx00vf4y09y2fw75czsd6g75bin4f6h33lpidl8z38x"; depends=[DOSE dplyr furrr ggplot2 ggraph glue igraph keras magrittr Matrix matrixLaplacian nloptr progress proxy purrr reticulate rlang shadowtext stringr tensorflow tfprobability tibble tidygraph tidyr]; }; - parglms = derive2 { name="parglms"; version="1.30.0"; sha256="1c4lhc1ixb765rqkshzlnjqbfx9smqgn40lnizhg84624jcbfmxc"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; - parody = derive2 { name="parody"; version="1.56.0"; sha256="12i5g4ai7a0p81kvqvz1qw099cy3g71n69pij8w760r3jn0c9ilw"; depends=[]; }; - pathRender = derive2 { name="pathRender"; version="1.66.0"; sha256="08g645cjzm4ayj7bxsdlh776h4yg761iqbqs1xzh7ifim6ibzh6f"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; - pathVar = derive2 { name="pathVar"; version="1.28.0"; sha256="1ygydyynfj5bqjkrrikxxqhj4bvnrif1hy0csfhm9dj19rwb891n"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; - pathifier = derive2 { name="pathifier"; version="1.36.0"; sha256="158dblhgx10wi78k8y48g9x7rw70pydc6bjrx65nzkl1h6i4km9s"; depends=[princurve R_oo]; }; - pathview = derive2 { name="pathview"; version="1.38.0"; sha256="0p7cdq03863zpw009prs1yh3gps1kw135anjfq6wpdkwza7xy4py"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; - pathwayPCA = derive2 { name="pathwayPCA"; version="1.14.0"; sha256="1ss71zs4jshvl3i2li0jfny5xr4lq9p25hbcm1kznpx3l9g9lklj"; depends=[lars survival]; }; - paxtoolsr = derive2 { name="paxtoolsr"; version="1.32.0"; sha256="02cwf2sypdf4fiyns1vfqy3djn6plq9w0zsisl2xlyrln7apmsl1"; depends=[httr igraph jsonlite plyr R_utils rappdirs readr rJava rjson XML]; }; - pcaExplorer = derive2 { name="pcaExplorer"; version="2.24.0"; sha256="0gs4az4h5mwnr3s8fq7im5p3mm4mhc0x5amjr2badqkw1fih3jp7"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; - pcaMethods = derive2 { name="pcaMethods"; version="1.90.0"; sha256="1cjmkfpbbfzkx6bi3r9jjx54iwkm4gl8hqa1776hxicq2x2c83s4"; depends=[Biobase BiocGenerics MASS Rcpp]; }; - pcxn = derive2 { name="pcxn"; version="2.20.0"; sha256="04h3nmm3xmzlgzqm6wnlw4mzhazy0ngbif9w35y9caazf2d0f7k8"; depends=[pcxnData pheatmap]; }; - pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.62.0"; sha256="06gplxjpkv9hkcvf536hr3w5fj3gfdc3klfxf7d15ivy4szr0nm5"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - peakPantheR = derive2 { name="peakPantheR"; version="1.12.2"; sha256="0fdpg17m4dsq53nynbqw08i3qiplvsm0bzaj6bcslr5rc2psnpxy"; depends=[bslib doParallel DT foreach ggplot2 gridExtra lubridate minpack_lm MSnbase mzR pracma scales shiny shinycssloaders stringr XML]; }; - peco = derive2 { name="peco"; version="1.10.0"; sha256="1pmq3rag4qn62yicrafl5yrkhqb383iz5jv5d6v9fsf4jjs1048j"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; }; - pengls = derive2 { name="pengls"; version="1.4.0"; sha256="1cmpwdq1b5sz1nwvzh25xmv5x37dcnhxz5i7fwjyqa9my2m0r6is"; depends=[BiocParallel glmnet nlme]; }; - pepStat = derive2 { name="pepStat"; version="1.32.0"; sha256="06m1ny2wa41sfaz9inmj2wi58j6qd49ncd9yx79hkrh3zymz0fc4"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; - pepXMLTab = derive2 { name="pepXMLTab"; version="1.32.0"; sha256="13bwyxlf8nx86ldzj01qlfba6yh75pzb1kjkpi7p7hs1b0yvb5xp"; depends=[XML]; }; - periodicDNA = derive2 { name="periodicDNA"; version="1.8.0"; sha256="03wdxbgsrj2c7j3fgxigjbq349y5c8cw80xvb5ja7lbi1isfb785"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; - pgca = derive2 { name="pgca"; version="1.22.0"; sha256="0bcq1qks87jjgd2bwpds6xvcvidcvl9pq53mi0dafihgd0s2ycfn"; depends=[]; }; - phantasus = derive2 { name="phantasus"; version="1.18.4"; sha256="0rjn66xjkr57w4nsjczxrw3hw90r9zfwqbmhs8pw4y1hd7j1alhi"; depends=[AnnotationDbi assertthat Biobase ccaPP curl data_table DESeq2 fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; - phemd = derive2 { name="phemd"; version="1.14.1"; sha256="18i2qps2r8h9fqln9gm0wz373xg3lfkgb3my8wk4w944h3an6280"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; }; - phenoTest = derive2 { name="phenoTest"; version="1.46.0"; sha256="0rcgbnqglfs9asyrssnhy7h99kikmnr7s1827y8q2agq3pl96q13"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; - phenomis = derive2 { name="phenomis"; version="1.0.2"; sha256="15lk3wapaaqqrlp02b2cvdlx8dgcvc3vjsfv8i70qh89rljialf8"; depends=[Biobase biodb biodbChebi data_table futile_logger ggplot2 ggrepel htmlwidgets igraph limma MultiAssayExperiment MultiDataSet plotly PMCMRplus ranger RColorBrewer ropls SummarizedExperiment tibble tidyr VennDiagram]; }; - phenopath = derive2 { name="phenopath"; version="1.22.0"; sha256="0p2lh858ykhqz0zj4h1vmjd27szwkrlswanapz4shhmvb4plrlbv"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; - philr = derive2 { name="philr"; version="1.24.0"; sha256="0k93rl2wm9hzp9bcq2v35hn1p4wy8xarb5rzl92wa5w3fj0j4nlw"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; - phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.22.0"; sha256="1gap3ihi1xymfp3nymxss4fnhyrpzbva29ki6wdrsizr188d7b0k"; depends=[matrixStats plyr]; }; - phyloseq = derive2 { name="phyloseq"; version="1.42.0"; sha256="07zi059v6zwrm31qwc7fmg35fwqlqfb6c30wwj9q4m2y67srnskk"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; - piano = derive2 { name="piano"; version="2.14.0"; sha256="10bq5k93gx35ysi7ja3821scrn455cyy8syc6aivaz00hcf7mzd8"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; - pickgene = derive2 { name="pickgene"; version="1.70.0"; sha256="0f6p41ryssw50il1hys6nhm818yzm4ppbksqm0mm7v6knk0mywzi"; depends=[MASS]; }; - pipeComp = derive2 { name="pipeComp"; version="1.8.0"; sha256="1nkfhza6nn0gzlfpg0c24rysz43vkx9syaccsrsn3a9i3vm76jh5"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; }; - pipeFrame = derive2 { name="pipeFrame"; version="1.14.0"; sha256="1wa06z8q7cxjaaq6fjvs69hd1yrl8s0gjn0733drrwsvsclp43ay"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr rmarkdown visNetwork]; }; - pkgDepTools = derive2 { name="pkgDepTools"; version="1.63.0"; sha256="10q0z1ps073py82zqii4sfdhnpvcyj4sx1yx3lzy5c41l8py6lag"; depends=[graph RBGL]; }; - planet = derive2 { name="planet"; version="1.6.0"; sha256="0260kdkambx29bl449a8ydysw99gq5pydaj8dq9bpn7p9rqd29xs"; depends=[dplyr magrittr tibble]; }; - plethy = derive2 { name="plethy"; version="1.36.0"; sha256="09929w6rd84hvz6fiydd5v0php9gvbvxgvsnxvkzwyxfmmmx1dzr"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; - plgem = derive2 { name="plgem"; version="1.70.0"; sha256="0hnhfdrlg4907dc4s17cy4kgmq5nr616f1wi7jn72acxwqfl4bk8"; depends=[Biobase MASS]; }; - plier = derive2 { name="plier"; version="1.68.0"; sha256="116d55v0jwlb11imac8swi7l4prn829sq2jvr1iqsijb7vqlvqli"; depends=[affy Biobase]; }; - plotGrouper = derive2 { name="plotGrouper"; version="1.16.0"; sha256="19d4rgrvk96fm1w0iqx0nyfxgxkwh6xmvgw8bxj7rf8z5qmin9hm"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; - plotgardener = derive2 { name="plotgardener"; version="1.4.2"; sha256="0c9n5hj3ib3nz3qc8jb2hvbl72c5pjpiny9hrygcw52aikj2wwjy"; depends=[curl data_table dplyr ggplotify IRanges plyranges purrr RColorBrewer Rcpp rlang strawr]; }; - plyranges = derive2 { name="plyranges"; version="1.18.0"; sha256="0lz43rwj7198s80lj2xk4r3dn3l1cpwxwvln5wz19l9131d8hclv"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; - pmm = derive2 { name="pmm"; version="1.30.0"; sha256="1yma0zpas34wh8axmq3q8hv3gp5vq9zsjvkbmzqd8mnvmkd4pbkg"; depends=[lme4]; }; - pmp = derive2 { name="pmp"; version="1.10.0"; sha256="10307945brcglm0c3ixbbn0icvb9aaclj0fvp1v56c9p2820j4ix"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; - podkat = derive2 { name="podkat"; version="1.30.0"; sha256="0nd32qksdja1p1q7qcn87l4fyd7cqr8n6zgdqhhl811ag9pviizr"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; - pogos = derive2 { name="pogos"; version="1.18.0"; sha256="12z4nw4by4ms86m5n92p2a13b8pm88xrg34159pa4qpn874y4g91"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; - polyester = derive2 { name="polyester"; version="1.34.0"; sha256="16wa4ylipkpk6a1vyaiic1vs73x0xif7ik1w5rrh9mkr16lbdixs"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; - powerTCR = derive2 { name="powerTCR"; version="1.18.0"; sha256="1d4wcvhkzzvm4g6v70dfx29iwrlry44bymprwir77y2dbwwr142f"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; }; - ppcseq = derive2 { name="ppcseq"; version="1.6.0"; sha256="1qywxjk2m8hxazw0238pdwzw2c6p7vhzx1m6bs3dkzn09jwpgav2"; depends=[benchmarkme BH dplyr edgeR foreach furrr future ggplot2 lifecycle magrittr purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; }; - pqsfinder = derive2 { name="pqsfinder"; version="2.14.1"; sha256="0vm65n5dyx2jmizb8s06zxxk7njfz0wvsdzdsaqb4sisf4dqlqi7"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; - pram = derive2 { name="pram"; version="1.14.0"; sha256="0jxsd9wydj0y5zyfdglh2ik8ba9mzc5y6qw4lpqqwsd0wc99bi94"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - prebs = derive2 { name="prebs"; version="1.38.0"; sha256="0s0ci8dn53b2h9z4vxbwaz58yj8w4s5kzjl5i516gzmhh6s1ss3g"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; - preciseTAD = derive2 { name="preciseTAD"; version="1.8.0"; sha256="002pnnbllb4bnaf1h1giavs4fbwhc7bdf5202nk734c08si33fi8"; depends=[caret cluster dbscan doSNOW e1071 foreach GenomicRanges gtools IRanges ModelMetrics pbapply pROC PRROC randomForest rCGH S4Vectors]; }; - preprocessCore = derive2 { name="preprocessCore"; version="1.60.2"; sha256="0ikxikmz9dy09g726q1wygymm6z2imlgfiizkgh1cl4s0m35fbbd"; depends=[]; }; - primirTSS = derive2 { name="primirTSS"; version="1.16.0"; sha256="00h9m37ga3wsbcafg4c338457xqjlmgmhhkcrvm38x39h20kxrqy"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; - proActiv = derive2 { name="proActiv"; version="1.8.0"; sha256="150n6nglbji1510g6kkq6b7i0nix70c6zahdrr4a6p1dpg15gfgv"; depends=[AnnotationDbi BiocParallel data_table DESeq2 dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges rlang S4Vectors scales SummarizedExperiment tibble]; }; - proBAMr = derive2 { name="proBAMr"; version="1.32.0"; sha256="1pn48pmiz6cgc3hjczhpzgld69my7xk37d1k7k37gm0dwzpd85c3"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; - proBatch = derive2 { name="proBatch"; version="1.14.0"; sha256="079dh61v1dmsasrh5sn6sn1rgi34mavxa1sc1y8x6wqjwabm4w1j"; depends=[Biobase corrplot data_table dplyr ggfortify ggplot2 lazyeval lubridate magrittr pheatmap preprocessCore purrr pvca RColorBrewer reshape2 rlang scales sva tibble tidyr viridis wesanderson WGCNA]; }; - proDA = derive2 { name="proDA"; version="1.12.0"; sha256="1b1p8sh80x5967rakyq75cj0sz01303w7p05b9irfr69yvfvlj45"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; }; - proFIA = derive2 { name="proFIA"; version="1.23.0"; sha256="0y08vj401f45dvgxjwjx94hvd0rk1wljk8n1irpkdafg24gv4fvj"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; - procoil = derive2 { name="procoil"; version="2.26.0"; sha256="1ncls2bgdaaq1kc728p5ay95ypm5byyhpzjck34hfpq867lp7x7m"; depends=[Biostrings kebabs S4Vectors]; }; - profileScoreDist = derive2 { name="profileScoreDist"; version="1.26.0"; sha256="0bc2y8xy4nfainz7s2phmhmdpii1ws7k4cylvqjmr52fnssnxyl3"; depends=[BiocGenerics Rcpp]; }; - profileplyr = derive2 { name="profileplyr"; version="1.14.1"; sha256="0r8rlqk4xl2y2z74vzxqxxg4x7scs5ysnywpd98phfkg8v5g8zdq"; depends=[BiocGenerics BiocParallel ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rlang Rsamtools rtracklayer S4Vectors soGGi SummarizedExperiment tidyr tiff TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - progeny = derive2 { name="progeny"; version="1.20.0"; sha256="0f5sfi9r9dr6w3xmspsbzby8dpza8x7djif7p2h6l99kwkf68jsb"; depends=[Biobase decoupleR dplyr ggplot2 ggrepel gridExtra reshape2 tidyr]; }; - projectR = derive2 { name="projectR"; version="1.14.0"; sha256="08abn5ghixlj4sw8ibfnd9ngs0kvgyc8g7p54wm8q1k45vknvszm"; depends=[cluster CoGAPS dplyr ggalluvial ggplot2 limma NMF RColorBrewer reshape2 ROCR scales viridis]; }; - protGear = derive2 { name="protGear"; version="1.2.0"; sha256="0vk1h7zp9hvzilvwdq4346d55axcwbsvjp3vpzwnsjdidszs7q7r"; depends=[Biobase data_table dplyr factoextra FactoMineR flexdashboard genefilter GGally ggplot2 ggpubr gtools htmltools kableExtra Kendall knitr limma magrittr MASS pheatmap plotly plyr purrr readr remotes rlang rmarkdown shiny shinydashboard styler tibble tidyr vsn]; }; - proteasy = derive2 { name="proteasy"; version="1.0.0"; sha256="186g1g5c4i1pdgqc1nwdxlm1nwzggvqswa0ny0195kgqd5ifw5j4"; depends=[AnnotationFilter data_table EnsDb_Hsapiens_v86 EnsDb_Mmusculus_v79 EnsDb_Rnorvegicus_v79 ensembldb Rcpi stringr]; }; - proteinProfiles = derive2 { name="proteinProfiles"; version="1.38.0"; sha256="0a4nwd9dabl3l8bx9fq4dfmqnvmhf8lj832kiswbdb0p8q3dhqvb"; depends=[]; }; - psichomics = derive2 { name="psichomics"; version="1.24.0"; sha256="16i4w3f31qj5n0hcqbli65c3hqf8wx8vdc3sa1axjazrdbjj02sd"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; - psygenet2r = derive2 { name="psygenet2r"; version="1.30.0"; sha256="00isn3avis6j2hdpamy5ps8lvmv6h93cwaimnvhcvnanb5wwksxr"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; - ptairMS = derive2 { name="ptairMS"; version="1.6.0"; sha256="0gmzmqqq9w3a9m3nkiv9j7bhqk7yx3vg9d5cqhr8n64yh97nq06f"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; }; - puma = derive2 { name="puma"; version="3.40.0"; sha256="1wdn5mgfig1pa153j2z6xa1k7qvha84yyyjc5a7yisrfnfrc9lcx"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; - pvac = derive2 { name="pvac"; version="1.46.0"; sha256="0ahcgw6kvkq0lrx4sbv902yz3gdkygxsqkd18kf45r0jzwd92k2s"; depends=[affy Biobase]; }; - pvca = derive2 { name="pvca"; version="1.38.0"; sha256="1cpyxgw1ynq3dms5yvcwaqd3s55ky80dgy811nl226mji278v9cl"; depends=[Biobase lme4 Matrix vsn]; }; - pwOmics = derive2 { name="pwOmics"; version="1.30.0"; sha256="1mklwy9p6miwzvcjzin5q0qcg9625bmbj5hi9dvm6cq48r0x5gwp"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; - pwrEWAS = derive2 { name="pwrEWAS"; version="1.12.0"; sha256="1y8knyl0axnbidkg1z9n1dmchdb79ixr7d6m1g2zhlzp10kmi4pk"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; }; - qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.16.1"; sha256="0jzk0h6lll7yxmiplrk0rhx5pvhq8jjifhi2fj4nyskx1brsnnfh"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; - qckitfastq = derive2 { name="qckitfastq"; version="1.14.0"; sha256="0220r27adgm8mj348602hzgrbj8f94d0xbcrfg9r5sjaajqbmf8w"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; - qcmetrics = derive2 { name="qcmetrics"; version="1.36.0"; sha256="1ab6w3ghalgjarkq91ci85dwpwp1dqdsj2m9adlmx05wpljg9qc4"; depends=[Biobase knitr pander S4Vectors xtable]; }; - qmtools = derive2 { name="qmtools"; version="1.2.0"; sha256="19zn0q493vn45wllzbzqfgnazr5x6ik2hvh7pay3s95421vls1bd"; depends=[ggplot2 heatmaply igraph MsCoreUtils patchwork rlang scales SummarizedExperiment VIM]; }; - qpcrNorm = derive2 { name="qpcrNorm"; version="1.56.0"; sha256="0am89s61dzzycnih78ywnp955yn2jw728i2r8f4qb37asjbaf8ah"; depends=[affy Biobase limma]; }; - qpgraph = derive2 { name="qpgraph"; version="2.32.2"; sha256="0lcgskwpd5mqdkr34icf2cyq79yd0g3kqis7axsfdxhgnl76kxh8"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; - qrqc = derive2 { name="qrqc"; version="1.52.0"; sha256="0411477y7nazlwbz3pfszr1wfas6qd0g0iz0p9pmq16dw8pzkgg6"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rhtslib testthat xtable]; }; - qsea = derive2 { name="qsea"; version="1.24.0"; sha256="1x3xv6r4qf8c3swycrmh83cigblsg37wjgxlw86gd78a58q84sim"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; }; - qsmooth = derive2 { name="qsmooth"; version="1.14.0"; sha256="0rgwvcydgmbj16bgxrs5yy1i4vikl9pakfdk6jxacr5p85v9ln07"; depends=[Hmisc SummarizedExperiment sva]; }; - qsvaR = derive2 { name="qsvaR"; version="1.2.0"; sha256="1g0ib16vflc3ncc8drq051r33cd0lavn7y7zw1xskmijxqxymkqh"; depends=[ggplot2 SummarizedExperiment sva]; }; - quantiseqr = derive2 { name="quantiseqr"; version="1.6.0"; sha256="0nxr4h3zwbvi80b5snz6diqm68w7dix0zk5p0zqp28nh1l45cl4w"; depends=[Biobase ggplot2 limSolve MASS preprocessCore rlang SummarizedExperiment tidyr]; }; - quantro = derive2 { name="quantro"; version="1.32.0"; sha256="0f274wh0w6nyipac05y6s2m2p60vkls5j4fwa5bc419j68h4znnz"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; - quantsmooth = derive2 { name="quantsmooth"; version="1.64.0"; sha256="1adwws3brb01d4g6yidipnd8akkiyc3gpdr876hy57qnmcq8xipp"; depends=[quantreg]; }; - qusage = derive2 { name="qusage"; version="2.32.0"; sha256="1k2437hpds42ps3qfj828qv3wxw7w3xkhi6zk7fp24sfbq959nf5"; depends=[Biobase emmeans fftw limma nlme]; }; - qvalue = derive2 { name="qvalue"; version="2.30.0"; sha256="1dsia1c9ir989aqrgl5j5v4bysm3pyw9225yrcajiwgl8fxymph4"; depends=[ggplot2 reshape2]; }; - r3Cseq = derive2 { name="r3Cseq"; version="1.44.0"; sha256="1w2brdw6w3fws6p92k6n9bivzrfwa06iwsdzkliy3z4dn13mc3rv"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; - rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.38.0"; sha256="01b5sbh1cdri7fj5ffhmpby3h4qg2lgfyn0jg4zdv8rcj6gagcvw"; depends=[data_table XML]; }; - rCGH = derive2 { name="rCGH"; version="1.28.0"; sha256="0r4jj34p8qinfsl8yvcyijkrcap2ik5qfdyl43az1x13c57724mk"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - rDGIdb = derive2 { name="rDGIdb"; version="1.24.0"; sha256="0ghj9712f28y4afgdnpvf11kxi5nghis1rgppx3wfck566yi7s7h"; depends=[httr jsonlite]; }; - rGADEM = derive2 { name="rGADEM"; version="2.46.0"; sha256="070i3jdq8b5w7k42xw2fc3vcmv312i19fa1am4fbk3g3ssnm61p3"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; }; - rGREAT = derive2 { name="rGREAT"; version="2.0.2"; sha256="1vmm7s5p8wqz1r8g1hy1l3mra3kkf76qgy5jkf84jxz7pi0clbld"; depends=[AnnotationDbi circlize digest doParallel DT foreach GenomeInfoDb GenomicFeatures GenomicRanges GetoptLong GlobalOptions GO_db IRanges org_Hs_eg_db progress RColorBrewer Rcpp RCurl rjson S4Vectors shiny TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - rGenomeTracks = derive2 { name="rGenomeTracks"; version="1.4.0"; sha256="0mj9md7cv1i206a0b3pqmkq9frg5k6k22hqjbsmvjvsql3ir9gcl"; depends=[imager reticulate rGenomeTracksData]; }; - rRDP = derive2 { name="rRDP"; version="1.32.0"; sha256="1fpj6syb1k8kababm7bzgkr2qqqx83vnfm9dnr577yfxldbpfjb6"; depends=[Biostrings]; }; - rSWeeP = derive2 { name="rSWeeP"; version="1.10.0"; sha256="16r6qfphaiwjvwmfxbaxdlfmc5bjyx2n7anlsavfgvh00jp31hm2"; depends=[pracma]; }; - rScudo = derive2 { name="rScudo"; version="1.14.0"; sha256="1bk7w1rb87j6c3280r6bwnvfhfzdv0ck9g96y0a8k1g297gvyvcc"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; }; - rTRM = derive2 { name="rTRM"; version="1.36.0"; sha256="11dp7vz1343hmaa7lly5m9h9fx94cpqqhsrvbb6vy57bh8nb6v4v"; depends=[AnnotationDbi DBI igraph RSQLite]; }; - rTRMui = derive2 { name="rTRMui"; version="1.36.0"; sha256="1gindmnq5vkapmfjpy9hglbk79g0s1sgzdljmhn3m5925h2al4k0"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; - rWikiPathways = derive2 { name="rWikiPathways"; version="1.18.1"; sha256="1zh6yz49s4jdpgg17dkkjv32fkp4zvdrcljfpbysbvc9lplrlj65"; depends=[data_table httr RCurl rjson tidyr XML]; }; - rain = derive2 { name="rain"; version="1.32.0"; sha256="0zlb52z0wk6057ph12lj7313bfkpbn502568cgdwify8s6q9g8ms"; depends=[gmp multtest]; }; - rama = derive2 { name="rama"; version="1.72.0"; sha256="0i6crxnzhwxnc55xh2rv36jfwh4bd30alw1f05ixdrxwqwsslbpy"; depends=[]; }; - ramr = derive2 { name="ramr"; version="1.6.0"; sha256="1rn5jvrcl3823124iwwbrjx89yyp3yflhlvjwnf6jldvm5bwqwpz"; depends=[BiocGenerics doParallel doRNG EnvStats ExtDist foreach GenomicRanges ggplot2 IRanges matrixStats reshape2 S4Vectors]; }; - ramwas = derive2 { name="ramwas"; version="1.22.0"; sha256="1qrsv88q18aqfgznli3y54n3ml3f3fc888kipdqj1akxj70fxlsm"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; - randPack = derive2 { name="randPack"; version="1.44.0"; sha256="15afb49v7fjhlmnm9g2vnjcql288qsxlc0vyyki4m9w24kn8pvsa"; depends=[Biobase]; }; - randRotation = derive2 { name="randRotation"; version="1.10.0"; sha256="1siw6y3izcaw84pccxa1lklcl9y16hay4vn1nippqv47bd1ynawv"; depends=[Rdpack]; }; - rawrr = derive2 { name="rawrr"; version="1.6.1"; sha256="06z294b659yly7jshb1dcaqdxjf8sxnq95qhzcxn2w2hz3v6lfz0"; depends=[]; }; - rbsurv = derive2 { name="rbsurv"; version="2.56.0"; sha256="0icqp84ppmj67vx0w69b7lh437fhydp6y8fi50qj6j8m6la4xr5k"; depends=[Biobase survival]; }; - rcellminer = derive2 { name="rcellminer"; version="2.20.0"; sha256="02nxyqr90izpzmvwi3pighnpf82m5b8rma1l2y24cnrymhrijmji"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; }; - rebook = derive2 { name="rebook"; version="1.8.0"; sha256="0albrc12i00xwwk7ck1f07vxn0i53pzdhvwgx2x64clz4z2pqhxv"; depends=[BiocStyle CodeDepends dir_expiry filelock knitr rmarkdown]; }; - receptLoss = derive2 { name="receptLoss"; version="1.10.0"; sha256="0vzikln11ychk9sx7wi8mpb2vqdh98by308jj4773qnk5flyg7b1"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; }; - reconsi = derive2 { name="reconsi"; version="1.10.0"; sha256="1hzwjmnbkdb4v8nvsk06vmyh5hm1snjn1a2q21jingppjs0dzvik"; depends=[ggplot2 ks Matrix matrixStats phyloseq reshape2]; }; - recount = derive2 { name="recount"; version="1.24.1"; sha256="0ryxz7kf52rwwri1bbpfpn67ivcx3fxrnym430d4nv6j1qfb1kh4"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; - recount3 = derive2 { name="recount3"; version="1.8.0"; sha256="1syfy713ybsl8vlvfag6i85icv34k1y0f6g6v168snc2z1xq4yrd"; depends=[BiocFileCache data_table GenomicRanges Matrix R_utils RCurl rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; - recountmethylation = derive2 { name="recountmethylation"; version="1.8.6"; sha256="1nrav24pq3jwi9jmy7b0h799q6bnw1sjd8a0gca3c1pn9zvg8xqn"; depends=[basilisk BiocFileCache DelayedMatrixStats HDF5Array minfi R_utils RCurl reticulate rhdf5 S4Vectors]; }; - recoup = derive2 { name="recoup"; version="1.26.0"; sha256="00ia9a9kqmcn329pvipaz15xfci6rw4377hpf7gnxhjkxx4b1rna"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; - regionReport = derive2 { name="regionReport"; version="1.32.0"; sha256="0ilqm51dnhv5bhda7ljdn1x4hwr4infpngsvwn7wvssvsgp1pcz0"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; - regioneR = derive2 { name="regioneR"; version="1.30.0"; sha256="01anwhz0axdl0g2zsaqz1qdxswxrryarbw6pmn5kmlpz4ipiq049"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; - regioneReloaded = derive2 { name="regioneReloaded"; version="1.0.0"; sha256="1m04wsciqdqjsfqkyb9rpq44jlcwiq0chr441jprg5h905xwcyda"; depends=[cluster ggplot2 ggrepel RColorBrewer regioneR reshape2 Rtsne scales umap]; }; - regsplice = derive2 { name="regsplice"; version="1.24.0"; sha256="06pp0m5y7y7f6bbwrgln76kskffy1mhcz1546657bsaqr67iaxmz"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; - regutools = derive2 { name="regutools"; version="1.10.0"; sha256="198pypw448vp3wa17xw5ygvpidw4fry3qyf5q0z5rv5aq7dwd0ay"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; - restfulSE = derive2 { name="restfulSE"; version="1.20.0"; sha256="10v569icyhnqqmplx21na6jyv5ipf5fbgygpd05fbjy447p8fhay"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; - rexposome = derive2 { name="rexposome"; version="1.20.1"; sha256="045cpwd6g6dybzj8vg7hwyg9m2yj23gb63ggmzvkzn1d8mzhc09l"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; - rfPred = derive2 { name="rfPred"; version="1.36.0"; sha256="13nmym6qvfxp85n9qh597vz4w0c4cvpqi9jj68dqvc2z0dhlcij7"; depends=[data_table GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; - rfaRm = derive2 { name="rfaRm"; version="1.10.2"; sha256="0i7w6062dl9plf839ildynldgbc1gjis1hw3y2flvkj9q5b32iar"; depends=[Biostrings data_table httr IRanges magick rsvg rvest S4Vectors stringi xml2]; }; - rgoslin = derive2 { name="rgoslin"; version="1.2.0"; sha256="0zcxd91qsz0p8z10cm1d2y81cj5ga7002p5sxzrzay33zcaa0f59"; depends=[dplyr Rcpp]; }; - rgsepd = derive2 { name="rgsepd"; version="1.30.0"; sha256="1bk6i336x2ng1kvgywcs18v6sn47cndahfbpcagl17x77pcna7by"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots org_Hs_eg_db SummarizedExperiment]; }; - rhdf5 = derive2 { name="rhdf5"; version="2.42.0"; sha256="1vxs227d1295fz8irr6fsv603cw96a801j8njhblvs0cry38d087"; depends=[rhdf5filters Rhdf5lib]; }; - rhdf5client = derive2 { name="rhdf5client"; version="1.20.0"; sha256="0wf0mv1kc3gd7vpazdip9253c1727ns9xysqfipg9lf1ydjny1fq"; depends=[DelayedArray httr R6 rjson S4Vectors]; }; - rhdf5filters = derive2 { name="rhdf5filters"; version="1.10.1"; sha256="14rkr0fisy7qrvjikpnwxwag79205hdxy6nkpwz501li4fr1rbnp"; depends=[Rhdf5lib]; }; - riboSeqR = derive2 { name="riboSeqR"; version="1.32.0"; sha256="0la8kmxxh5jnqsrmmvyhi313bjdbqkiq16hcxar6mgyjhxlsm610"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; - ribor = derive2 { name="ribor"; version="1.10.0"; sha256="16ikb3815cmwagjjjcv8rmshybpjl0vfc20mpl5xr92dzbnn7jj2"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; - ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.10.0"; sha256="04r0nhjfm659i5n2351f67dghjm9jrfvcnzbf7ylqgnhym4ibzrn"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; - rifi = derive2 { name="rifi"; version="1.2.2"; sha256="1n21791r1azxajr5hvj1z73x9wmk5hlc15dsf3px47bhfbqv1bxx"; depends=[car cowplot doMC dplyr egg foreach ggplot2 nls2 nnet reshape2 rlang rtracklayer S4Vectors scales stringr SummarizedExperiment tibble]; }; - rmelting = derive2 { name="rmelting"; version="1.14.0"; sha256="0j3k68ms5iarqr7c0haijgxkqai5282awxbjg7cwsman5658l30y"; depends=[Rdpack rJava]; }; - rmspc = derive2 { name="rmspc"; version="1.4.0"; sha256="0lcygxazp137v9m3l7vkp4vpc9v0ahggvy4k53nx8sp84nljgpbh"; depends=[BiocManager GenomicRanges processx rtracklayer stringr]; }; - rnaEditr = derive2 { name="rnaEditr"; version="1.8.0"; sha256="1sk69a2cnnjfm2a9fdyj07zkgnjnzlpx2rdbz2lihck3pf3b63l3"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; - rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.28.0"; sha256="1znbydb4pdmchrwr94r87v3k6zmdh6f2d5vrs3wvs4ak343k86x4"; depends=[RColorBrewer]; }; - roar = derive2 { name="roar"; version="1.34.0"; sha256="1bf3ii3zaxkzw5y1wc5c474bq4cgavb67df54czmd3zi1lbhzphd"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; - rols = derive2 { name="rols"; version="2.26.0"; sha256="0y7r7anz68jl8f6q2v8f4gh32v946xkkk3kzgd38y8lklwdmrf0w"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; - ropls = derive2 { name="ropls"; version="1.30.0"; sha256="0vjwci0z83b56q1wi1k00926f0vh3220a44m0zzfxg2cm5j3fwxb"; depends=[Biobase ggplot2 MultiAssayExperiment MultiDataSet plotly SummarizedExperiment]; }; - rprimer = derive2 { name="rprimer"; version="1.2.0"; sha256="0067jsxs627fmxm8zd5zpycgcyir7mkcph91nn2kawxkhjgxx9wk"; depends=[Biostrings bslib DT ggplot2 IRanges mathjaxr patchwork reshape2 S4Vectors shiny shinycssloaders shinyFeedback]; }; - rpx = derive2 { name="rpx"; version="2.6.3"; sha256="1f0qhnqf8ak415xpqgyhsd2dgblg671ivz600aqcg6k9hy903jgy"; depends=[BiocFileCache curl jsonlite RCurl xml2]; }; - rqt = derive2 { name="rqt"; version="1.24.0"; sha256="063prv68avs1nwjwvp3685v1n8xvcpg7zsiy613mqg2k3fp3hjcj"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; - rqubic = derive2 { name="rqubic"; version="1.44.0"; sha256="0cmwx499a3s6a336afzx0h2mkhbxsrh4gpd486y5wxsbq2bva7zh"; depends=[biclust Biobase BiocGenerics]; }; - rrvgo = derive2 { name="rrvgo"; version="1.10.0"; sha256="0zh621sgy56phjm6h5733845js56s33zrww8z62l31v2yg0ff3zq"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap umap wordcloud]; }; - rsbml = derive2 { name="rsbml"; version="2.56.0"; sha256="1syg49qz6vwzyw2zrxwrfb7kzgk0lim1q674f7mfvjah1fnv8bgc"; depends=[BiocGenerics graph]; }; - rsemmed = derive2 { name="rsemmed"; version="1.8.0"; sha256="0y7np05hcq7rhr0c56yiv4y1xqk7kjrlbwad0rqgpnlfscxclcav"; depends=[dplyr igraph magrittr stringr]; }; - rtracklayer = derive2 { name="rtracklayer"; version="1.58.0"; sha256="1qxr0ffmmkbfkbijz7pbks3kvms9k4a5rmma4j9p7ar477fxvlmk"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl restfulr Rsamtools S4Vectors XML XVector zlibbioc]; }; - runibic = derive2 { name="runibic"; version="1.20.0"; sha256="0g7hqgsq7h0338fmlb4ipv1kwiijcrfajhgwchn5akhspvsch269"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; - sRACIPE = derive2 { name="sRACIPE"; version="1.14.0"; sha256="079lmgi6az5ri05lvca58msh678r7k1xwk3xhq8iffqh87wy6cmj"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; }; - sSNAPPY = derive2 { name="sSNAPPY"; version="1.2.5"; sha256="17z0iz6jr0nx14s4d80j94jdk78af4i1zkin24z56fas28sm2ka8"; depends=[BiocParallel dplyr edgeR ggforce ggnewscale ggplot2 ggraph graphite igraph magrittr org_Hs_eg_db pheatmap purrr Rcpp RcppArmadillo reshape2 rlang SummarizedExperiment tibble]; }; - sSeq = derive2 { name="sSeq"; version="1.36.0"; sha256="1w0iq7pih9z8662wj2lj1xbg66n752mx4g2q33ck5vwdxg10ry4c"; depends=[caTools RColorBrewer]; }; - safe = derive2 { name="safe"; version="3.38.0"; sha256="1gza1liz0y2i6f5nnnwbwl99fjp3cr1aknxiy3rmbjydfq8yxbrw"; depends=[AnnotationDbi Biobase SparseM]; }; - sagenhaft = derive2 { name="sagenhaft"; version="1.68.0"; sha256="0hh9gkv07qrlnarrj7h579dhisyq01c5jjl3rvq5w086wfy9154m"; depends=[SparseM]; }; - sampleClassifier = derive2 { name="sampleClassifier"; version="1.22.0"; sha256="0yvqr3xvji7zj6cw6kdr64k4sr71kpw3vwdv1dgi10ws3ygls65m"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; - sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.8.0"; sha256="0b72lqn394l73ck857dfs7iyxidzcjcy9hfamfy72g4p7804xpan"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra knitr logger openxlsx phangorn plotly reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; }; - sangerseqR = derive2 { name="sangerseqR"; version="1.34.0"; sha256="1i8zxqw48az743q1gziwp1ah7dkvy0gp26sfa2j20i7lard663mw"; depends=[Biostrings shiny]; }; - sarks = derive2 { name="sarks"; version="1.10.0"; sha256="1f3yypn7dzjq58jnkv3jc0330mddpapzn1wlvq2crjbh161mxaym"; depends=[binom Biostrings cluster IRanges rJava]; }; - satuRn = derive2 { name="satuRn"; version="1.6.0"; sha256="1gldcdnpbxc2bgi5sr3g0cgkfx8gx2jmyadnxzm07zcmi724nsyx"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; }; - savR = derive2 { name="savR"; version="1.36.0"; sha256="1b7kjgj2r6lgkdnrq91wcwvwb5an0gfdsbyp7j0pvn2byfm4lply"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; - scAlign = derive2 { name="scAlign"; version="1.12.0"; sha256="1mlhxwsfrmhysa5mcyx7vf2jn49snf41yb7xqmyi40wilj9h8qlb"; depends=[FNN ggplot2 irlba purrr Rtsne Seurat SingleCellExperiment tensorflow]; }; - scAnnotatR = derive2 { name="scAnnotatR"; version="1.4.0"; sha256="0rc035kzbzrxvlcpphzg0yg7q82jvlxpi9xjq8q59hvbpyg1sz93"; depends=[AnnotationHub ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; - scBFA = derive2 { name="scBFA"; version="1.12.0"; sha256="0884s9laa63yf2p9wf66a67ipkc2x075c432x8p96vr326p4h8nf"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; }; - scBubbletree = derive2 { name="scBubbletree"; version="1.0.0"; sha256="0ivyp3zf7clr4zbdv2srjv42dx2zvlaq4yprccxb3yimrnmihks6"; depends=[ape future future_apply ggplot2 ggtree patchwork reshape2 scales Seurat]; }; - scCB2 = derive2 { name="scCB2"; version="1.8.0"; sha256="1r1iyw7wyvapnzxclrm036jfjnvlgpjpcwg635g0mwa4wyahsxnl"; depends=[doParallel DropletUtils edgeR foreach iterators Matrix rhdf5 Seurat SingleCellExperiment SummarizedExperiment]; }; - scClassify = derive2 { name="scClassify"; version="1.10.0"; sha256="0i7r9yiw13lzwvy2vxwkfkj3x7a54gv6r8syxib7qj8yr53nmyiy"; depends=[BiocParallel Cepo cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; }; - scDD = derive2 { name="scDD"; version="1.22.0"; sha256="0kmnmlzww2xfd04lp9nsh0wkigab9ipgqlsn2jrd77fizpd0kvwg"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; - scDDboost = derive2 { name="scDDboost"; version="1.0.0"; sha256="066cp50n7cxr7wbcgz0207gh5a6h3lwbpfkn5w17w06k24f3zjkb"; depends=[BH BiocParallel cluster EBSeq ggplot2 mclust Oscope Rcpp RcppEigen SingleCellExperiment SummarizedExperiment]; }; - scDataviz = derive2 { name="scDataviz"; version="1.8.0"; sha256="0spw9m2grza3n2ghsw6z534xsd786rmww66l2xz7i37wjfdpv26a"; depends=[corrplot flowCore ggplot2 ggrepel MASS matrixStats RColorBrewer reshape2 S4Vectors scales Seurat SingleCellExperiment umap]; }; - scDblFinder = derive2 { name="scDblFinder"; version="1.12.0"; sha256="0gslh28rycx0p6a6fmzbsqy1hg2sn3pp5blxgw01qk9f0ank7szi"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular bluster DelayedArray GenomeInfoDb GenomicRanges igraph IRanges MASS Matrix Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment SummarizedExperiment xgboost]; }; - scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.18.0"; sha256="04q0132vdcpxkwma91j29pac82fcjgvhhx42ppmxkmdjc3q3adzq"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; - scGPS = derive2 { name="scGPS"; version="1.12.2"; sha256="176g5y0dmpxqp0n6cilkcq4yj1ixx7ac7i212vgsxd0wi96n5bq0"; depends=[caret DESeq2 dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; }; - scHOT = derive2 { name="scHOT"; version="1.10.0"; sha256="0d065rg1942ynvzch3d34hjywgscp8wz1c4i71zmxm5rznkpzsxw"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scMAGeCK = derive2 { name="scMAGeCK"; version="1.9.1"; sha256="1i6l8jxrd66aqk3m9212wsi8jqklvs0agsqrllvf9mrh16js4vby"; depends=[ggplot2 Seurat]; }; - scMET = derive2 { name="scMET"; version="1.0.0"; sha256="0j6zfb1qlqbvfgfr4nqn43lxwgslaxj3dqd2wbnnmmq7zv2hxmdl"; depends=[assertthat BH BiocStyle coda cowplot data_table dplyr ggplot2 logitnorm MASS Matrix matrixStats Rcpp RcppEigen RcppParallel rstan rstantools S4Vectors SingleCellExperiment StanHeaders SummarizedExperiment VGAM viridis]; }; - scMerge = derive2 { name="scMerge"; version="1.14.0"; sha256="0rwhii3ypvv0frbfmlkhyfzwgy2wcrd3kn09w9ikwi8pn8pivcjy"; depends=[BiocParallel BiocSingular cluster DelayedArray DelayedMatrixStats distr igraph M3Drop pdist proxy ruv S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scPCA = derive2 { name="scPCA"; version="1.12.0"; sha256="1r84lnhmmhvb4qfmi575gjb2nrd4izaz9f4dzb1k8bmy83fkyfmv"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; }; - scPipe = derive2 { name="scPipe"; version="1.20.6"; sha256="1yik05zn5yl2wryi96ssgkgn2yzvh3w11ndprqa2fzlcfhgg4j75"; depends=[AnnotationDbi basilisk BiocGenerics biomaRt Biostrings data_table dplyr DropletUtils flexmix GenomicAlignments GenomicRanges GGally ggplot2 glue hash IRanges magrittr MASS Matrix mclust MultiAssayExperiment org_Hs_eg_db org_Mm_eg_db purrr Rcpp reshape reticulate Rhtslib rlang robustbase Rsamtools Rsubread rtracklayer S4Vectors scales SingleCellExperiment stringr SummarizedExperiment testthat tibble tidyr zlibbioc]; }; - scReClassify = derive2 { name="scReClassify"; version="1.4.0"; sha256="0jq5ygm9s2sxh7z7hdrjgzm7kvyba6lrxnva6nv8qvlhkcczfnl0"; depends=[e1071 randomForest SingleCellExperiment SummarizedExperiment]; }; - scRecover = derive2 { name="scRecover"; version="1.14.1"; sha256="05j2jxsvy2kh0f4b9wwc57n5v1qqibxhyqv00pdm3zfh3drsca4a"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl rsvd SAVER]; }; - scRepertoire = derive2 { name="scRepertoire"; version="1.8.0"; sha256="06807wfmj5gdjh55fx2fphalbms3a83mpyrhyigpb2whbr9yzmql"; depends=[doParallel dplyr ggalluvial ggplot2 ggraph igraph plyr powerTCR reshape2 rlang SeuratObject SingleCellExperiment stringdist stringr SummarizedExperiment tidygraph vegan]; }; - scShapes = derive2 { name="scShapes"; version="1.4.0"; sha256="1n0y86kd5cf4wz035q1pflifd5c455l2x57vfsfixmn5inixg6g1"; depends=[BiocParallel dgof emdbook magrittr MASS Matrix pscl VGAM]; }; - scTGIF = derive2 { name="scTGIF"; version="1.12.0"; sha256="0fx0n7ll5p3fxhd0v5366knpnisrbsadimpd9z0l3zw9818kr12p"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; }; - scTHI = derive2 { name="scTHI"; version="1.10.0"; sha256="1x0yhqa7h1gfz1z1hm051b2ml1q8nlc9q0rm1mp38nc23hcjaj7n"; depends=[BiocParallel Rtsne]; }; - scTensor = derive2 { name="scTensor"; version="2.8.0"; sha256="0i15w3vl1yydag30kk7q5w95gjksb9ashann73xlp7v3j8ap1apq"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category ccTensor checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; }; - scTreeViz = derive2 { name="scTreeViz"; version="1.4.0"; sha256="19pccz1j8pdx9a155hcs7f28p34zk3m3jaiywsbmxaxxd93bg084"; depends=[clustree data_table digest epivizr epivizrData epivizrServer ggplot2 ggraph httr igraph Matrix Rtsne S4Vectors scater scran Seurat SingleCellExperiment SummarizedExperiment sys]; }; - scanMiR = derive2 { name="scanMiR"; version="1.4.0"; sha256="009i4dkagv0mpmx8k8rdr1sl9n79kayfjj953h11b1x8i9gkshkj"; depends=[BiocParallel Biostrings cowplot data_table GenomeInfoDb GenomicRanges ggplot2 ggseqlogo IRanges S4Vectors stringi]; }; - scanMiRApp = derive2 { name="scanMiRApp"; version="1.4.0"; sha256="1cd77fij54iadbwlyl3l1w6fma85y2n9azmg5mbqr0sa977swgqr"; depends=[AnnotationDbi AnnotationFilter AnnotationHub BiocParallel Biostrings data_table digest DT ensembldb fst GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets IRanges Matrix plotly rintrojs rtracklayer S4Vectors scanMiR scanMiRData shiny shinycssloaders shinydashboard shinyjqui waiter]; }; - scater = derive2 { name="scater"; version="1.26.1"; sha256="1mjnf2y41lvni77g9hyw8qlvlsi5nxv5ha0fnch1kmw9814nycq3"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats ggbeeswarm ggplot2 ggrastr ggrepel gridExtra Matrix pheatmap RColorBrewer RcppML rlang Rtsne S4Vectors scuttle SingleCellExperiment SummarizedExperiment uwot viridis]; }; - scatterHatch = derive2 { name="scatterHatch"; version="1.4.0"; sha256="0fig318c9njgl3ficp7fnriip3k9ig72g0r2jvp9q7aahjap586v"; depends=[ggplot2 plyr spatstat_geom]; }; - sccomp = derive2 { name="sccomp"; version="1.2.1"; sha256="184hifrapg333mys9mjhb4rjnaj5945hmmkqgb8mibp9a4x4rqdz"; depends=[BH boot dplyr forcats ggplot2 ggrepel glue lifecycle magrittr patchwork purrr Rcpp RcppEigen RcppParallel readr rlang rstan rstantools scales SeuratObject SingleCellExperiment StanHeaders stringr tibble tidyr tidyselect]; }; - scde = derive2 { name="scde"; version="2.26.2"; sha256="08qvqqzzmmk4kc612yjfl6zp8mhif1kfv0xi8x42wpdhjzzzldlp"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; - scds = derive2 { name="scds"; version="1.14.0"; sha256="0zdf9yf5s0l8ma7d8yhi7bjd964yj84f5h6aq2p0sypjlnc515hd"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; }; - schex = derive2 { name="schex"; version="1.12.0"; sha256="08xfbf8yiwzhzi0p1cix5hdnshlib5mg42qpk7ir5667i5lp5l1h"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin scales Seurat shiny SingleCellExperiment]; }; - scifer = derive2 { name="scifer"; version="1.0.0"; sha256="12zd13awjvwpgyinrixr7ys9989m2zs0w009r0nk0mgy0fh8vwhp"; depends=[Biostrings data_table DECIPHER dplyr flowCore ggplot2 gridExtra kableExtra knitr plyr rlang rmarkdown sangerseqR scales stringr tibble]; }; - scmap = derive2 { name="scmap"; version="1.20.2"; sha256="00zqvjfn1pqza5gl3jfr10fvcrq6gpw9hfjcxjsm4f5p7ldnhpw0"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scmeth = derive2 { name="scmeth"; version="1.18.0"; sha256="1gqgq6ganjm8madimxbqyw3z2fxq8d3pjhrfjvmkwgd2fzk3wb4a"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; - scone = derive2 { name="scone"; version="1.22.0"; sha256="0pg09r28xqjlvb6nbswglnmwi05q63fag6rp3sw41g6z8gm5wap7"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; }; - scoreInvHap = derive2 { name="scoreInvHap"; version="1.20.0"; sha256="1y0vinj3si683z1d9hfaxfwgn6jshi7h689ixqygqciq63gac5wj"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; - scp = derive2 { name="scp"; version="1.8.0"; sha256="0n238jfn97y3njgfjqjf0baqr1l5pv2jm5zamyxyrz86p2811flf"; depends=[dplyr magrittr matrixStats MsCoreUtils MultiAssayExperiment QFeatures S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scran = derive2 { name="scran"; version="1.26.2"; sha256="0r80k4dsk609l9ha1jl64yhpwnf0x37i28k9largqsffsl6hw0fy"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; - scruff = derive2 { name="scruff"; version="1.16.0"; sha256="0hg0f8k3mxhz4mk5r6qdhkr5h8rd1zv0x54bm1fq9pfc9vp90b8b"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; - scry = derive2 { name="scry"; version="1.10.0"; sha256="0vx6fi8hnxms6d3hm3qxkrdx1qpyd7vhwdk7ds98ads070miqr21"; depends=[BiocSingular DelayedArray glmpca HDF5Array Matrix SingleCellExperiment SummarizedExperiment]; }; - scuttle = derive2 { name="scuttle"; version="1.8.4"; sha256="04257gl995r575md1n3h2gy502yi6c8x3352l96mib7rdv4yg53f"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; - sechm = derive2 { name="sechm"; version="1.6.0"; sha256="124dmcksw1yl7p0rwsp1ddlfv3ing56ggkaln421n9jnmj13fv0l"; depends=[circlize ComplexHeatmap matrixStats randomcoloR S4Vectors seriation SummarizedExperiment]; }; - segmentSeq = derive2 { name="segmentSeq"; version="2.32.0"; sha256="059q1wr1sfpi7vh7lrkpfzjd8rz19ya837y7hack0i9icygwjmk3"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; - segmenter = derive2 { name="segmenter"; version="1.4.0"; sha256="05ichsmjn3pklrknc95yz9ghhvwjg0y2jw6wcx2pf4d6iiwg7d5c"; depends=[bamsignals ChIPseeker chromhmmData ComplexHeatmap GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - selectKSigs = derive2 { name="selectKSigs"; version="1.10.0"; sha256="1pnqywp3wabd586xhlvxkrjvc1fyl4b0b6945rpz3qbaw1475pa6"; depends=[gtools HiLDA magrittr Rcpp]; }; - semisup = derive2 { name="semisup"; version="1.22.0"; sha256="1wn2a86rdvh8p37iifhmsq149j135dyp1h0xr86xfj88ffzj0y9n"; depends=[VGAM]; }; - seq2pathway = derive2 { name="seq2pathway"; version="1.30.0"; sha256="0g43693cqqi51fbfr28hbhcmnjam6vvf1llzn1wizbahcchgjvwx"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; - seqArchR = derive2 { name="seqArchR"; version="1.2.0"; sha256="03j4vff2lp1zzikhfa5sflnc0bd63r72aqim3jdsyrk5ic6355d3"; depends=[BiocParallel Biostrings cli cluster cvTools fpc ggplot2 ggseqlogo MASS Matrix matrixStats prettyunits reshape2 reticulate]; }; - seqCAT = derive2 { name="seqCAT"; version="1.20.0"; sha256="0hv0sabc82ak49di42xf7an9csgp9q0d9wkx7d1sjlfm9ayza88z"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; - seqCNA = derive2 { name="seqCNA"; version="1.44.0"; sha256="08hhjp5prgnr3c2j2r69f5sl2wf5jd1mrdy43b1kmnlpnm3yz16i"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; - seqLogo = derive2 { name="seqLogo"; version="1.64.0"; sha256="1xlxi1iaqj7iabzbx15j6pk4551dyj6pa6a6qf5ffr3v7k2pmznp"; depends=[]; }; - seqPattern = derive2 { name="seqPattern"; version="1.30.0"; sha256="17nvxy8kdc1k0kyf0qny6jp3gzr024q37mmh5x18jjr794hnf9s5"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; - seqTools = derive2 { name="seqTools"; version="1.32.0"; sha256="0ya3y3zam68zyw7ky2k8nswk4zd8c0fhihyg6qdw43aicisykms2"; depends=[zlibbioc]; }; - seqbias = derive2 { name="seqbias"; version="1.46.0"; sha256="0mc6lv7vkch138n46gk1q1hfhv37mfxjij39q36wa0jy7s8cagfa"; depends=[Biostrings GenomicRanges Rhtslib zlibbioc]; }; - seqcombo = derive2 { name="seqcombo"; version="1.20.0"; sha256="1q0yfcw30rgnz7l3miy1024vhjlqrhf2w0b3yvs4df6sb2w37q5m"; depends=[ggplot2 igraph yulab_utils]; }; - seqsetvis = derive2 { name="seqsetvis"; version="1.18.1"; sha256="06z539vmdn6w2843rz26g16hvznzh64qd2dl0h4acikmb46j0cjk"; depends=[cowplot data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; - sesame = derive2 { name="sesame"; version="1.16.1"; sha256="01b2a06xz9cggr57m920dh1pylac30l5w8mxq5vcb4jbl1flh6py"; depends=[BiocFileCache BiocParallel dplyr GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore readr reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; - sevenC = derive2 { name="sevenC"; version="1.18.0"; sha256="1xw0whm905zm644iadv7yiqid82pxw46mv0n6m24591hc7p0xjyf"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; - sevenbridges = derive2 { name="sevenbridges"; version="1.28.0"; sha256="1sfwa4i3ak87wfj04y5gi4a5cw9by27xqv41gz29sgclh61gmpc0"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; - shinyMethyl = derive2 { name="shinyMethyl"; version="1.34.0"; sha256="1xbadc4xszcqh211r8z0wp417f17aczz834icli17mcsl996ln3a"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; - shinyepico = derive2 { name="shinyepico"; version="1.6.0"; sha256="00ma5la96w5djjcmz42jc6bzp8b9jk398y0s4sbqg6pkwcw235hd"; depends=[data_table doParallel dplyr DT foreach GenomicRanges ggplot2 gplots heatmaply limma minfi plotly reshape2 rlang rmarkdown rtracklayer shiny shinycssloaders shinyjs shinythemes shinyWidgets statmod tidyr zip]; }; - sigFeature = derive2 { name="sigFeature"; version="1.16.0"; sha256="0ivfi4cr2lw59cj0c3biqbbc1m3vnv480gmijfk9hx86g60wx5fp"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; - sigPathway = derive2 { name="sigPathway"; version="1.66.2"; sha256="0k86hlz7zbbw7559bd2sl59pr441kihgwvg8nr75mj8d50n783sy"; depends=[]; }; - siggenes = derive2 { name="siggenes"; version="1.72.0"; sha256="0gis34s56y4xa61a9gywjwgd6525ywasa6r4xxhj3rshh1dz5jkv"; depends=[Biobase multtest scrime]; }; - sights = derive2 { name="sights"; version="1.24.0"; sha256="1qwm470ysc4jlp6pazpmyb8wpcisv2397328f0x37g5a5vilzx7c"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; - signatureSearch = derive2 { name="signatureSearch"; version="1.12.0"; sha256="1wzhli6da0x7126av9jx1qar04wlwx16krzspglfg0c1xagvm7sk"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix org_Hs_eg_db qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment tibble visNetwork]; }; - signeR = derive2 { name="signeR"; version="2.0.2"; sha256="1npsa5xkbjchm7gikvz9b8ghrxy5mfikkki7ja71fgavw30jdnj3"; depends=[ada BiocFileCache BiocGenerics Biostrings BSgenome bsplus class clue cowplot dplyr DT e1071 future future_apply GenomeInfoDb GenomicRanges ggplot2 ggpubr glmnet IRanges kknn listenv magrittr MASS maxstat nloptr NMF pheatmap PMCMRplus ppclust pROC proxy pvclust randomForest RColorBrewer Rcpp RcppArmadillo readr reshape2 rtracklayer scales shiny shinycssloaders shinydashboard shinyWidgets survival survivalAnalysis survminer tibble tidyr VariantAnnotation VGAM]; }; - signifinder = derive2 { name="signifinder"; version="1.0.0"; sha256="0gbhi9sklknnc4hp2w5wp2bj2rq0hmfqzcx3nqqf78fh00gz5bk5"; depends=[AnnotationDbi BiocGenerics ComplexHeatmap consensusOV DGEobj_utils dplyr ensembldb ggplot2 ggridges GSVA IRanges magrittr matrixStats maxstat openair org_Hs_eg_db patchwork RColorBrewer SummarizedExperiment survival survminer TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene viridis]; }; - sigsquared = derive2 { name="sigsquared"; version="1.30.0"; sha256="0xai7gk3kq669ngfdf7cpizaxv42sj50dzvc6xcqkzahn7l3y9pw"; depends=[Biobase survival]; }; - similaRpeak = derive2 { name="similaRpeak"; version="1.30.0"; sha256="0ncx8r62lvj0711f37szd9998cfpq5nsw6nq00xvkd781p3jf0gn"; depends=[R6]; }; - simpleSeg = derive2 { name="simpleSeg"; version="1.0.2"; sha256="0dd3qp2q7jw6q9hd3zfnzmsccgpnwb5kmgw5zsyp418pl5vh0kas"; depends=[BiocParallel cytomapper EBImage S4Vectors spatstat_geom SummarizedExperiment terra]; }; - simplifyEnrichment = derive2 { name="simplifyEnrichment"; version="1.8.0"; sha256="130x5hy6jzglc6clwanh2kmhw567i802w620ffs3977kjfpjsjgy"; depends=[AnnotationDbi BiocGenerics circlize clue cluster colorspace ComplexHeatmap digest GetoptLong GlobalOptions GO_db GOSemSim Matrix org_Hs_eg_db proxyC slam tm]; }; - sincell = derive2 { name="sincell"; version="1.30.0"; sha256="0dsl7p18nw7db7g7fx3l4x6mpj4krkxxacl8gddq91xiggjiib1l"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; - single = derive2 { name="single"; version="1.2.0"; sha256="0dszp2w7qxx4cnlm1bsy89dfmwqmg2fr337wqdbv42cgniyscxwa"; depends=[BiocGenerics Biostrings dplyr GenomicAlignments IRanges reshape2 rlang Rsamtools stringr tidyr]; }; - singleCellTK = derive2 { name="singleCellTK"; version="2.8.0"; sha256="03jiqf23f04cvzrrwq29kwd1x84dnv5nf41hbzmi3jd6rjzdnd5s"; depends=[AnnotationHub ape batchelor Biobase BiocParallel celda celldex circlize cluster colorspace colourpicker ComplexHeatmap cowplot data_table DelayedArray DelayedMatrixStats DESeq2 dplyr DropletUtils DT enrichR ensembldb ExperimentHub fields fishpond ggplot2 ggplotify ggrepel ggtree gridExtra GSEABase GSVA GSVAdata igraph KernSmooth limma magrittr MAST Matrix matrixStats metap msigdbr multtest plotly plyr R_utils reshape2 reticulate rlang rmarkdown ROCR Rtsne S4Vectors scater scDblFinder scds scMerge scran scRNAseq scuttle Seurat shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SingleR SoupX SummarizedExperiment sva TENxPBMCData tibble TrajectoryUtils TSCAN tximport VAM withr yaml zinbwave]; }; - singscore = derive2 { name="singscore"; version="1.18.0"; sha256="10hffcscysv8n1iijn2pqzkn9rhnh0xp07hl9b3688jzi1ydjj3k"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; }; - sitadela = derive2 { name="sitadela"; version="1.6.0"; sha256="1vqs5vdj12dll199cmsx6l1brfk36cgmv89lqxgf6bl0570gl6ls"; depends=[Biobase BiocGenerics biomaRt Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; - sitePath = derive2 { name="sitePath"; version="1.14.0"; sha256="06l55v7s8sh2gj687pdp93ffkaw57ad68sbkf616hdr199dfj1la"; depends=[ape aplot ggplot2 ggrepel ggtree gridExtra RColorBrewer Rcpp seqinr tidytree]; }; - sizepower = derive2 { name="sizepower"; version="1.68.0"; sha256="10wsvs54qdvwhpy865dlpjwzq7l1cnsg8hq1vs1jp36vspwwxzrg"; depends=[]; }; - skewr = derive2 { name="skewr"; version="1.30.0"; sha256="1dwckg1i55dgz6r19gkvpa1k7j2xdhzr0g408q951npi1hzq1hmb"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; - slalom = derive2 { name="slalom"; version="1.20.2"; sha256="0hcj8gl86kzg7mwhrir68mfil1z2ik9wiaz5iqb6vadz3s9cn2nx"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; - slingshot = derive2 { name="slingshot"; version="2.6.0"; sha256="00h9iid2z9r55l4hlaa1q0nkbcfq0f7k2afkw4ymjwhm1b8yqj33"; depends=[igraph matrixStats princurve S4Vectors SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; - snapCGH = derive2 { name="snapCGH"; version="1.68.0"; sha256="1zxvl8mkby7yb5kppddag6k9w78d1fm6adx52h4cgrfckn28w64q"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; - snapcount = derive2 { name="snapcount"; version="1.10.0"; sha256="0y30ndqgld4c5ql8xp68xv3bi92njjqh9jcj2pxvkf7h9r3j8lad"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; }; - snifter = derive2 { name="snifter"; version="1.8.0"; sha256="0n39vlfkljckh9hpjwfyxbxd2747ss7y9nxb0hb0188p75q2dfkl"; depends=[assertthat basilisk irlba reticulate]; }; - snm = derive2 { name="snm"; version="1.46.0"; sha256="19gxs81i4ghwdjfi86xxsgxniha1wkmm2ivddcv5nhv90d3lai2j"; depends=[corpcor lme4]; }; - snpStats = derive2 { name="snpStats"; version="1.48.0"; sha256="14rkrav4iydc85194skdy33sk365pjmmvxxvzaxxh0k9ds009qwx"; depends=[BiocGenerics Matrix survival zlibbioc]; }; - soGGi = derive2 { name="soGGi"; version="1.30.0"; sha256="08prw50z7rdcys8gbc0sn55i8zkydijjpjcqpz5hw7bcdcqkbd37"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - sojourner = derive2 { name="sojourner"; version="1.11.0"; sha256="1s0iqzn65s9g4yymy059z122i9wvgkcb5718snzxhj7mkqjzwhhc"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang scales shiny shinyjs sp truncnorm]; }; - spaSim = derive2 { name="spaSim"; version="1.0.2"; sha256="0qp2qr2my4s8yxkzyhsajzvgy3w5zsx70z2kp44sfpgh52krijmx"; depends=[dplyr ggplot2 RANN SpatialExperiment spatstat_geom spatstat_random SummarizedExperiment]; }; - sparrow = derive2 { name="sparrow"; version="1.4.0"; sha256="04cshh2ilp5h5ls7zj018imgp1s8lw42i0x0vb171nrjnav7a8pl"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; - sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.22.0"; sha256="1c8dlfc1jmr3c4s1fnr31444mh92sn21bw8rjcr6andx4cmlryz2"; depends=[MASS MCMCpack optparse tmvtnorm]; }; - sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.10.0"; sha256="1rq23ra4nnz9dx0gsg9bh8zcbz6s0pyvjwq30xl6g4hbqz927xb0"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; - sparsenetgls = derive2 { name="sparsenetgls"; version="1.16.0"; sha256="1d4gpf919rl50cbnk849bgp7wz3iiczzg94v856z2r7d52f4qx86"; depends=[glmnet huge MASS Matrix]; }; - spatialDE = derive2 { name="spatialDE"; version="1.4.3"; sha256="12qq27f1l09xjih6415fb4da53df4zy8prgbf7lk5pbhdcw5zy6y"; depends=[basilisk checkmate ggplot2 ggrepel gridExtra Matrix reticulate S4Vectors scales SpatialExperiment SummarizedExperiment]; }; - spatialHeatmap = derive2 { name="spatialHeatmap"; version="2.4.0"; sha256="0swqmynvhr1vdmrr465aja6zln19psai5ymv07kpakb5dxhfpsgp"; depends=[BiocFileCache BiocParallel data_table dplyr dynamicTreeCut edgeR flashClust genefilter ggdendro ggplot2 ggplotify gplots gridExtra grImport htmlwidgets igraph limma Matrix plotly rappdirs reshape2 rsvg S4Vectors scater scran scuttle shiny shinydashboard SingleCellExperiment SummarizedExperiment tibble UpSetR visNetwork WGCNA xml2 yaml]; }; - spatzie = derive2 { name="spatzie"; version="1.4.0"; sha256="040s8nmg5hr6rjb7cn2jxjihr8m80v1bdbcynikqxn6vw1cqr3h2"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicFeatures GenomicInteractions GenomicRanges ggplot2 IRanges matrixStats motifmatchr S4Vectors SummarizedExperiment TFBSTools]; }; - specL = derive2 { name="specL"; version="1.32.1"; sha256="088fgp8lz6bnrx0ddn61x25vrp672q7cr0ky4x2vh31q4rd0j4zw"; depends=[DBI protViz RSQLite seqinr]; }; - spicyR = derive2 { name="spicyR"; version="1.10.7"; sha256="1sjn2x0mbi5s727zi6fpg7kr0awrvbkhs2zcnpqr9kd311nij2za"; depends=[BiocGenerics BiocParallel concaveman data_table dplyr ggforce ggplot2 IRanges lme4 lmerTest mgcv pheatmap rlang S4Vectors scam SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tidyr]; }; - spikeLI = derive2 { name="spikeLI"; version="2.58.0"; sha256="1wv6xybjf7m9rlylr2dbh5d9kx5vxc0l72y0581fj7l9352qgznh"; depends=[]; }; - spiky = derive2 { name="spiky"; version="1.4.0"; sha256="0pdsxidi0pwmwb94iv4l7346vsy9ccwqlr8l62c7ykgnvgn0v1ji"; depends=[bamlss Biostrings BlandAltmanLeh BSgenome GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges Rsamtools S4Vectors scales]; }; - spkTools = derive2 { name="spkTools"; version="1.54.0"; sha256="14nx30vhimx251w2fixbiis72wi2v8f9rcdbx18rkf6wg0iz2wbj"; depends=[Biobase gtools RColorBrewer]; }; - splatter = derive2 { name="splatter"; version="1.22.1"; sha256="1jdwf15zsnzw4bcf76h1bvfv9y9m1ypwbz875322ln129n7pdvh8"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; - splineTimeR = derive2 { name="splineTimeR"; version="1.26.0"; sha256="125g0sxlkj8f699f0arnq43inx9w4a05bb5jfn6nw9xiqv5pqgah"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; - splots = derive2 { name="splots"; version="1.64.0"; sha256="0malaw94s55qh7x7x98s472vnr2rgylgfvkrf0113h2l1v92nhmy"; depends=[RColorBrewer]; }; - spqn = derive2 { name="spqn"; version="1.10.0"; sha256="024zjcf2wwj2i85zkwdcqxxr88066dsbw2i44mmihk121yhf6qg4"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; - srnadiff = derive2 { name="srnadiff"; version="1.18.2"; sha256="0myh4pk2jbyr5ih8vycgw0vplgvpyar0xwcgr785xnpfjp8vj078"; depends=[baySeq BiocManager BiocParallel BiocStyle DESeq2 devtools edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - ssPATHS = derive2 { name="ssPATHS"; version="1.12.0"; sha256="08wcv1jni9vhqnzvn41nsq9254px3qdf2wv60zkyrw8wpwkpyfy8"; depends=[dml MESS ROCR SummarizedExperiment]; }; - sscore = derive2 { name="sscore"; version="1.70.0"; sha256="07rzrac3v1lz4qas0zl6b9mjh5kvpd2wjgczc92dsl9x7ac4nn9i"; depends=[affy affyio]; }; - sscu = derive2 { name="sscu"; version="2.28.0"; sha256="0c1g5220bk5rrhngbjdix6bj03vd9vx62z3hmjkx3dq88p1wfkq6"; depends=[BiocGenerics Biostrings seqinr]; }; - ssize = derive2 { name="ssize"; version="1.72.0"; sha256="1cgh2yniw4mlbmfcmawpv9kf8fkjw6w8b58vkndwcpf6pz7bznbk"; depends=[gdata xtable]; }; - ssrch = derive2 { name="ssrch"; version="1.14.0"; sha256="0w4b7xg0qxsn7sn9skqa1qvjrmicr8baxlasaza1gjxlqngvj95c"; depends=[DT shiny]; }; - ssviz = derive2 { name="ssviz"; version="1.32.0"; sha256="1zplxlbd2f5h86dzgfw55q09jpd27fkaslswj6lrvavw9a89pmc8"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; - stJoincount = derive2 { name="stJoincount"; version="1.0.0"; sha256="0lphq2dff2dpbjixwf83dazb2fkncfn8jbaqsnhbskd8ansmydid"; depends=[dplyr ggplot2 magrittr pheatmap raster Seurat sp SpatialExperiment spdep SummarizedExperiment]; }; - staRank = derive2 { name="staRank"; version="1.40.0"; sha256="1f92yc538dvyqyxswrqwf1c0r8kaj45wpcpikrs9vr1g0s072lv5"; depends=[cellHTS2]; }; - stageR = derive2 { name="stageR"; version="1.20.0"; sha256="1layvv9akzijw2br9jzw6cwxn2rimha4m48fm8wn465n1nqcns0m"; depends=[SummarizedExperiment]; }; - standR = derive2 { name="standR"; version="1.2.2"; sha256="0c1zvivp9v2cky60sjv3zp0myxjpbfzsb53m6jbjpjyhlh74g4a1"; depends=[Biobase BiocGenerics dplyr edgeR ggalluvial ggplot2 limma mclustcomp patchwork readr rlang ruv RUVSeq S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment tibble tidyr]; }; - statTarget = derive2 { name="statTarget"; version="1.28.0"; sha256="1cd5rbwrf9ybh08zfb7wagr5p9172xrblf5k8kh9hd7v0qd8ax1j"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; - stepNorm = derive2 { name="stepNorm"; version="1.70.0"; sha256="0b26habd4gs0iy8vrq6mfink8yy93sn5hgq5jlx6c65rba8cs1nq"; depends=[marray MASS]; }; - strandCheckR = derive2 { name="strandCheckR"; version="1.16.0"; sha256="17ibvcff0qdjrwvbhjzphxc8xyk8hv0rn5kyfjnwzkqsqvippx9g"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 rmarkdown Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - struct = derive2 { name="struct"; version="1.10.0"; sha256="0piz8kgxv1l78k5abvmzb42p0rc29j1r3iyj4izh2rpn0k8lpwpf"; depends=[knitr ontologyIndex rols S4Vectors SummarizedExperiment]; }; - structToolbox = derive2 { name="structToolbox"; version="1.10.1"; sha256="152i2iwp331bqb3qy5yxbksw6q35kvsljs1dgvbjjm4b8pqvrk2i"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; }; - subSeq = derive2 { name="subSeq"; version="1.28.0"; sha256="0q5snp5k3fdzp3bk125ix9ksnn5w81hp9bq7hx7vr5pkcr27y2jr"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; - supersigs = derive2 { name="supersigs"; version="1.6.0"; sha256="1dy4l467xj77bragcshwyildnlybx3g4gf1sds005yf6766kmjr9"; depends=[assertthat Biostrings caret dplyr rlang rsample SummarizedExperiment tidyr]; }; - supraHex = derive2 { name="supraHex"; version="1.36.0"; sha256="060z35h4d48xq3pv3i00pa8m5vjg15qama8s2pd5vwgnyi0pv2l1"; depends=[ape dplyr hexbin igraph magrittr MASS purrr readr stringr tibble tidyr]; }; - surfaltr = derive2 { name="surfaltr"; version="1.4.0"; sha256="0lbdcx88j3icrfg5py3iarmjrb3a6ybzkdvq25q51qzzlwixzll7"; depends=[biomaRt Biostrings dplyr ggplot2 httr msa protr readr seqinr stringr testthat xml2]; }; - survcomp = derive2 { name="survcomp"; version="1.48.0"; sha256="0a6sqzgvxfgjr6yrpv1vaza6yni6n1gminr2g0912rhkaz1c7z6z"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; - survtype = derive2 { name="survtype"; version="1.14.0"; sha256="0z3vgiryafqsqwxk5gzpkp7svkhxyqvl2sbh5vvfpdb5jil93dgg"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; }; - sva = derive2 { name="sva"; version="3.46.0"; sha256="0c1b7w4rvyy8i0jygj8g9xgf46rmgx8bpdlp2x4fdjr9xsrsl23g"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; }; - svaNUMT = derive2 { name="svaNUMT"; version="1.4.0"; sha256="0vhl1d8b4ys1nd44pf5z6kr4gl5cww9ml8pnf7fphzz6d0r8hg89"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; - svaRetro = derive2 { name="svaRetro"; version="1.4.0"; sha256="04z604mkpzmbflf34338011dmbwzhws294jzc06akxg98220airv"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; - swfdr = derive2 { name="swfdr"; version="1.24.0"; sha256="0svvmssp4jlhcs8agihpc4hlar83d5czrlp7l5xlzf4cagzx2nv9"; depends=[]; }; - switchBox = derive2 { name="switchBox"; version="1.34.0"; sha256="0mi9wwlv8rlcf4lsmingnb7d195ji19s264kfdsp5gpc7vg9arli"; depends=[gplots pROC]; }; - switchde = derive2 { name="switchde"; version="1.24.0"; sha256="0j1a1a1zg0f9xirbva42w48k06b9kbk340jygcj3gp18ii207wql"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; - synapsis = derive2 { name="synapsis"; version="1.4.0"; sha256="127yx1a56r0fh8n9ir2zlhxs2fj47pfdxn8dssdmns0d77rhnnvc"; depends=[EBImage]; }; - synapter = derive2 { name="synapter"; version="2.22.0"; sha256="1zl8nqyaqrp424k0a06s4h7ffaxixhf1i39zx3kl3bhvayqmqviw"; depends=[Biobase Biostrings cleaver lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; - synergyfinder = derive2 { name="synergyfinder"; version="3.6.3"; sha256="14zmapbjpjhq3sffwab84j8qqc55mawh9a8mjm78hwi5hsxi9kp5"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; - synlet = derive2 { name="synlet"; version="1.28.0"; sha256="12hmzwfd31nhnxcjxcpyw5q5rsgky99q446qk52dy7vqy5achld3"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; - syntenet = derive2 { name="syntenet"; version="1.0.4"; sha256="0qy7xkb577zyj4f8syljyrgfwkig0970hm7ngkhbwbm2n25mdgvl"; depends=[Biostrings GenomicRanges ggnetwork ggplot2 igraph intergraph networkD3 pheatmap RColorBrewer Rcpp rlang rtracklayer testthat]; }; - systemPipeR = derive2 { name="systemPipeR"; version="2.4.0"; sha256="0lwc4d4k6qmnwsh8fpp5rmiaxhzwl2f0dhzs23ska5xy04466r49"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; - systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.8.1"; sha256="193c7si0jkkfz2p3sd8am4mga721mkxxf2wyv6b7yqarhvi5cdc2"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; - systemPipeTools = derive2 { name="systemPipeTools"; version="1.6.0"; sha256="0qj8c652ms4ja4bjp57gx75xr4m3haj9bh3q337cqqr0wk02gn80"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; - tLOH = derive2 { name="tLOH"; version="1.6.0"; sha256="1clpyiz04scsknvq5y1kk8ipx1a9ljrb1127wrsjvrgj6q4fjilj"; depends=[bestNormalize data_table depmixS4 dplyr GenomicRanges ggplot2 MatrixGenerics naniar purrr scales stringr VariantAnnotation]; }; - tRNA = derive2 { name="tRNA"; version="1.16.1"; sha256="16z9spk96lzabrc6cck4zyradpaw81z4c2lfm2c2i86si52lk946"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; }; - tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.16.0"; sha256="1zmqdh9va0sxzf9jfngrhh5kdbkshz0n5x7fqf23anyhwwzr8z1p"; depends=[BiocGenerics Biostrings GenomicRanges httr IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; }; - tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.18.0"; sha256="1hnd953pbhzx6b3hqn8mx5d6bv43pc6dw3n7a9z393rkydn21wdg"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; }; - tRanslatome = derive2 { name="tRanslatome"; version="1.36.0"; sha256="1w2fii837md64pg4d79shxmk658vi0dkqggl6r6b11f6m2ja946v"; depends=[anota Biobase DESeq2 edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd sigPathway topGO]; }; - tanggle = derive2 { name="tanggle"; version="1.4.0"; sha256="11mhavfy1fscndz5yiihxb9davmwvxslwj6ph7251787h1sr337g"; depends=[ape ggplot2 ggtree phangorn]; }; - target = derive2 { name="target"; version="1.12.0"; sha256="135hphjpp8326gbsl2j115082pnazpr6n5rj9ppync6bbl1iisq1"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; }; - tenXplore = derive2 { name="tenXplore"; version="1.20.0"; sha256="0di434q3xch7hb93cnaa7zac4s8jx0k7wbvf6rl0j0rk35zdp3lx"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; - ternarynet = derive2 { name="ternarynet"; version="1.42.0"; sha256="01z262509vka2sfhzccwlmgi5frf56x07gbsan762hgvrcscg8jb"; depends=[BiocParallel igraph]; }; - terraTCGAdata = derive2 { name="terraTCGAdata"; version="1.2.0"; sha256="1yfvqdsgd3apan43cbjin95mwnbym1m0f1c8x212k277cc3rm22r"; depends=[AnVIL BiocFileCache dplyr GenomicRanges MultiAssayExperiment RaggedExperiment readr S4Vectors TCGAutils tidyr]; }; - tidySingleCellExperiment = derive2 { name="tidySingleCellExperiment"; version="1.8.0"; sha256="0kkxd64rlksw7l0hw53ckc9mhsvsb0yj8w078bh4rd16iqk3jnnc"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr tidyselect ttservice]; }; - tidySummarizedExperiment = derive2 { name="tidySummarizedExperiment"; version="1.8.1"; sha256="1sry782zf2sisjwlhgdh1vfr0ljbw2rrwwb907jxmafg6jm96rxq"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect vctrs]; }; - tidybulk = derive2 { name="tidybulk"; version="1.10.1"; sha256="100xnjz73wl48a93gv4361pllyb96nbhg5q8spgq131wp0i0zjzz"; depends=[crayon dplyr GenomicRanges lifecycle magrittr preprocessCore purrr readr rlang S4Vectors scales stringi stringr SummarizedExperiment tibble tidyr tidyselect]; }; - tigre = derive2 { name="tigre"; version="1.52.0"; sha256="1cj4yqdad1xs8k682qx92b03nbyx51qdqsf7y90bll3z51xhwvdq"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; - tilingArray = derive2 { name="tilingArray"; version="1.76.0"; sha256="19bkgblpkcp3w3sdyn82c37gkz1sv3r4d546zpbnh36q2pi3l4zd"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; - timeOmics = derive2 { name="timeOmics"; version="1.10.0"; sha256="1szhdd29gfa7ah7yf683d69s2w0w6r8nh3kc7fii3vnyqspspb19"; depends=[dplyr ggplot2 ggrepel lmtest magrittr mixOmics plyr purrr stringr tibble tidyr]; }; - timecourse = derive2 { name="timecourse"; version="1.70.0"; sha256="0lq5haikg76vbrf3jmyxx6s7kglwaabdbwza2sd6zg84lbpyw3nv"; depends=[Biobase limma marray MASS]; }; - timescape = derive2 { name="timescape"; version="1.22.0"; sha256="0i0v10gaj47dw53am4z1rdhzbdfh8nybgdb204h928jfnc1ag20f"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; - tkWidgets = derive2 { name="tkWidgets"; version="1.76.0"; sha256="09zhzm42h814srqzkzdswp4y450j24166r87szlimzcdjm38xnkj"; depends=[DynDoc widgetTools]; }; - tomoda = derive2 { name="tomoda"; version="1.8.0"; sha256="1sfn1l0bys7bmfglhn73jw7qzniabgv3ffbns4ci17d29zzf0akk"; depends=[ggplot2 ggrepel RColorBrewer reshape2 Rtsne SummarizedExperiment umap]; }; - tomoseqr = derive2 { name="tomoseqr"; version="1.2.0"; sha256="1x583lzmf2dslvm2a103i7k5gkd6spavnrrxxp6v35dmj1g531fg"; depends=[animation BiocFileCache dplyr ggplot2 plotly purrr readr shiny stringr tibble]; }; - topGO = derive2 { name="topGO"; version="2.50.0"; sha256="1ripdn7mcabh96bm4p807dbwj7jv05a54kss4snhz84svqq383m4"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; - topconfects = derive2 { name="topconfects"; version="1.14.0"; sha256="00bpbkwafvcak847grg2ypmnagwr2imdg4vmsm3f5s3qd97ra69f"; depends=[assertthat ggplot2]; }; - topdownr = derive2 { name="topdownr"; version="1.20.0"; sha256="1m5213k4drmicswjsphzz7m9d93275vlwy1fzp2iiaqjr7w12b6a"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; - trackViewer = derive2 { name="trackViewer"; version="1.34.0"; sha256="1gd95f947lw4yp8l9azlfg5hylg6bxfc10dxw5cgpsacny9lnbkr"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rcpp Rgraphviz rhdf5 Rsamtools rtracklayer S4Vectors scales]; }; - tracktables = derive2 { name="tracktables"; version="1.32.0"; sha256="1cp9n1sa028xh6265gn83xjy6bqc05gnghdr6lnwmb75pv7sliyg"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; - tradeSeq = derive2 { name="tradeSeq"; version="1.12.0"; sha256="0wkbjhwqk094nd5h6sl2nw5jp5vmkh9why635l8qkqmxa2jm3gh0"; depends=[Biobase BiocParallel edgeR ggplot2 igraph magrittr MASS Matrix matrixStats mgcv pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble TrajectoryUtils viridis]; }; - transcriptR = derive2 { name="transcriptR"; version="1.26.0"; sha256="03v8xn777vyma82ma5dzk07i1g7406cvsybdz4bf6hj8bgx5ynw7"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; - transcriptogramer = derive2 { name="transcriptogramer"; version="1.20.0"; sha256="0m9kqshmvfyj30ssxp9qx15780zpmxsq7vgidmz66pqv36cn06vh"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; - transformGamPoi = derive2 { name="transformGamPoi"; version="1.4.0"; sha256="1ihk1bml8kjzhfx52zj8xxbrqb12p2jphymxi7rh0df038khj4sr"; depends=[DelayedArray glmGamPoi HDF5Array Matrix MatrixGenerics Rcpp SummarizedExperiment]; }; - transite = derive2 { name="transite"; version="1.16.0"; sha256="0kgh4npxfkbmd525pmpf08247wrdary863qhvmkwc3z7i91973sj"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; - transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.8.0"; sha256="0r5cc3r2x1gjr5f6wkwk8jw812f6asfk6r5qr9wl5iad4h1i2d20"; depends=[dplyr KEGGREST purrr RCy3 tibble]; }; - traseR = derive2 { name="traseR"; version="1.28.0"; sha256="0pya0d9mng8lizc0x08pai6bjvaxj740h903p4y9b1fshl27r6mk"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; - traviz = derive2 { name="traviz"; version="1.4.0"; sha256="17nazzn7h5hmmrb6dfxybnfj4yhc0qikn32q7ari7v5bg6fz6bky"; depends=[Biobase ggplot2 mgcv princurve RColorBrewer rgl SingleCellExperiment slingshot SummarizedExperiment viridis]; }; - treeio = derive2 { name="treeio"; version="1.22.0"; sha256="1xl8497ya79hlp3v3fihnz9grwni29v6860i273lrpcljv8868l9"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; }; - treekoR = derive2 { name="treekoR"; version="1.6.1"; sha256="12h3qwildrqksjj654wbrcx69m6wkrwr1rx05xwzbd6vg0ljc3d3"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; }; - trena = derive2 { name="trena"; version="1.20.0"; sha256="0c2m825p2fggr8y6zmqa2nlhvh28k6miga6812900fcc1r82fv2n"; depends=[AnnotationDbi biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 WGCNA xgboost]; }; - tricycle = derive2 { name="tricycle"; version="1.6.0"; sha256="0b5agqhywg23zxf0f9s1vfbzs7s7ijf9c716s7hwjprxfdz5znvw"; depends=[AnnotationDbi circular dplyr GenomicRanges ggnewscale ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; - trigger = derive2 { name="trigger"; version="1.44.0"; sha256="0h9zv5ak3arp436ivxqz7xmfanqk6m8k7xs0y5c6586fjzrhz7y5"; depends=[corpcor qtl qvalue sva]; }; - trio = derive2 { name="trio"; version="3.36.0"; sha256="1gccqcyrq5di7763q4mpl28fj64bpjm5s1vwjy5cwkhhkp90kr23"; depends=[LogicReg siggenes survival]; }; - triplex = derive2 { name="triplex"; version="1.38.0"; sha256="1zd0r8xn8ri357x95cbd67vcsvjicq8fzqj0gp18v70vq22k331i"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; - tripr = derive2 { name="tripr"; version="1.4.0"; sha256="0kwmi1s9v0rwpf9qgdah8s5c93f17qcs8s5hhhd2z2rh9lm7sgx3"; depends=[config data_table dplyr DT golem gridExtra plot3D plotly plyr pryr RColorBrewer shiny shinyBS shinyFiles shinyjs stringdist stringr]; }; - tscR = derive2 { name="tscR"; version="1.10.0"; sha256="1i372yw3rf1s1zr5dn7p2w9p0qgmghl1b1is8wq20g8zz3hf0aka"; depends=[class cluster dplyr dtw GenomicRanges ggplot2 gridExtra IRanges knitr latex2exp prettydoc RColorBrewer rmarkdown S4Vectors SummarizedExperiment]; }; - ttgsea = derive2 { name="ttgsea"; version="1.6.3"; sha256="1c4ngsrczca10fnlrnr8n1h55j6g1xj3laklr8aahhgdq5isajr7"; depends=[data_table DiagrammeR keras purrr stopwords text2vec textstem tm tokenizers]; }; - tweeDEseq = derive2 { name="tweeDEseq"; version="1.44.0"; sha256="09rdcax78vbcrl7q7i457n18jk298lxagxm0v89x3s6izvqr025p"; depends=[cqn edgeR limma MASS]; }; - twilight = derive2 { name="twilight"; version="1.74.0"; sha256="1lia4q637ngh47zlr5g18isp9acrb4d9g1fzck2akldqa0pnn66r"; depends=[Biobase]; }; - twoddpcr = derive2 { name="twoddpcr"; version="1.22.0"; sha256="01bfphc5hi8mk5j72f95pdqbi28bj4nfdvr0lzp9xs38qfnb80h7"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; - txcutr = derive2 { name="txcutr"; version="1.4.0"; sha256="05skv6ks1gq2wbx9gm5c3gk5k77vy248brhcay43ni900xwn10zi"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors]; }; - tximeta = derive2 { name="tximeta"; version="1.16.1"; sha256="15qf8s9akl5qp5wklph5i61d96d9ifr5ijl796v1vafwrj4f3wpa"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; }; - tximport = derive2 { name="tximport"; version="1.26.1"; sha256="1r67q4nb2bx9nqycyr2gnfmh4gizl0c7l510vmlcdvplv3yi73yn"; depends=[]; }; - uSORT = derive2 { name="uSORT"; version="1.24.0"; sha256="1fhhl00qdj7ihvb3ia2nd215m1ylbaszpyq1w7bmgv89v5ghhsgf"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; - uncoverappLib = derive2 { name="uncoverappLib"; version="1.8.1"; sha256="196xw6m69ld6nnbgqyyr7vd9qgqlczybgs7phvm7g36q4rywsnkm"; depends=[BiocFileCache condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools S4Vectors shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.34.0"; sha256="0zkqr1s8gagwsh33kzp0n2n7ff5jhfn6a60gvab5spk7vr76j442"; depends=[BiocGenerics HTqPCR]; }; - universalmotif = derive2 { name="universalmotif"; version="1.16.0"; sha256="1vfg703wxbgxw2cwqqz3kfyqj4za5n3skxxzi8c31azamg4hxs18"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS Rcpp RcppThread rlang S4Vectors yaml]; }; - updateObject = derive2 { name="updateObject"; version="1.2.0"; sha256="13rq1hv0rg8cj3z8d2b9mfih5sybicb4razv8vaic1i7c7sbypwf"; depends=[BiocGenerics digest S4Vectors]; }; - variancePartition = derive2 { name="variancePartition"; version="1.28.9"; sha256="1al7wkbv26gldba61gq80c3mznsxwr7z5njv2s0lb7hnll9bscar"; depends=[aod Biobase BiocParallel doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS Matrix pbkrtest progress Rdpack remaCor reshape2 RhpcBLASctl rlang scales]; }; - vbmp = derive2 { name="vbmp"; version="1.66.0"; sha256="1gfvk1g9q73p9z91zasblya1w218yhzawp6dgyf0lnldx36kpvc9"; depends=[]; }; - velociraptor = derive2 { name="velociraptor"; version="1.8.0"; sha256="07nwx9cahia4a6g15xhccdlwxnhvwq46dy2hqcqqzydgpsapa6wv"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; }; - veloviz = derive2 { name="veloviz"; version="1.4.0"; sha256="01f2d28h0gnh38g50yphmg3aqy1ya2ysj1xabs2a6y3wnqzrahzk"; depends=[igraph Matrix mgcv Rcpp RSpectra]; }; - vidger = derive2 { name="vidger"; version="1.18.0"; sha256="086q79hf689hslsrxzzif9f7cwkm80djfl0vn75cd0xbhsqpsayf"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; - viper = derive2 { name="viper"; version="1.32.0"; sha256="11i2q9nakh534nx2l736id7k1yqhk7jpg32sbfl4vrnh398q86h6"; depends=[Biobase e1071 KernSmooth mixtools]; }; - vissE = derive2 { name="vissE"; version="1.6.0"; sha256="1wfdrqvsqxc3jllmqbrrcwy7737kifxzmgrlr220zfzhc5hf4888"; depends=[ggforce ggplot2 ggraph ggrepel ggwordcloud GSEABase igraph msigdb plyr RColorBrewer reshape2 scales scico textstem tidygraph tm]; }; - vsclust = derive2 { name="vsclust"; version="1.0.0"; sha256="05lzdrjira4ck0b3jjfs3n7fhd8p65pvy4p96241j0lng1q9bwgm"; depends=[limma matrixStats MultiAssayExperiment qvalue Rcpp shiny]; }; - vsn = derive2 { name="vsn"; version="3.66.0"; sha256="1k77rg5jf646m1pn59qhlsbb9fzhlpnrj4dzxagknawcbpnnjl0z"; depends=[affy Biobase ggplot2 lattice limma]; }; - vtpnet = derive2 { name="vtpnet"; version="0.38.0"; sha256="17b744wiknlgwq3c404ijnd3nqp1hran2v315gis0y20kb9xbjm3"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; - vulcan = derive2 { name="vulcan"; version="1.20.0"; sha256="01cz2kv9ayb0819kqc65qhjs9ny3549a8af5c1lwrqxss8bg9s6b"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq2 DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; - waddR = derive2 { name="waddR"; version="1.12.0"; sha256="00yjkphzj7yfz57d6i64w75x4mc8i6sjvb0v0jjmkg2vpbmzbfnk"; depends=[arm BiocFileCache BiocParallel eva Rcpp RcppArmadillo SingleCellExperiment]; }; - wateRmelon = derive2 { name="wateRmelon"; version="2.4.0"; sha256="0m8mra0jb6sgm13dagqn1pj81dha4dyj65xc6r2sh0yc3pyjb20h"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; - wavClusteR = derive2 { name="wavClusteR"; version="2.32.0"; sha256="1z7y3wnrqr2xqrvs2xwmv419aqlizq0az17dpxmj1hg9knyls1bx"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; }; - weaver = derive2 { name="weaver"; version="1.64.0"; sha256="1ykdr01sichl615m6m5dbaarsz4b3fg59fd9cg3gicp01nvba6mz"; depends=[codetools digest]; }; - webbioc = derive2 { name="webbioc"; version="1.70.0"; sha256="1mgag0gjavpld4xxlpfafq6fhzjafxgqyf677xrm6ff26z6z1ja2"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; - weitrix = derive2 { name="weitrix"; version="1.10.0"; sha256="1mh2847rxs35n1dmzpx0yjaszhqb67ff2qdzcn0k5ki2acm0f4l5"; depends=[assertthat BiocGenerics BiocParallel Ckmeans_1d_dp DelayedArray DelayedMatrixStats dplyr ggplot2 glm2 limma purrr reshape2 RhpcBLASctl rlang S4Vectors scales SummarizedExperiment topconfects]; }; - widgetTools = derive2 { name="widgetTools"; version="1.76.0"; sha256="1p93dzf7w9z1ria0f8n32aymam9abxyg50ngnh7s6a8n24mvvjy5"; depends=[]; }; - wiggleplotr = derive2 { name="wiggleplotr"; version="1.22.0"; sha256="1yp9siy4249wkwd0yy5lkwp79xir53f8mihiv4dkir8fscgampl3"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; - wpm = derive2 { name="wpm"; version="1.8.0"; sha256="05zpj0i4741xn1g0yhkq3mg9zjppfryrfc47pxnys9bjfij0az52"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; }; - wppi = derive2 { name="wppi"; version="1.6.0"; sha256="0kc3nkim8fhajhai5bwzwirsg74zbdib3dd7cfr75ddwd8myc913"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; }; - xcms = derive2 { name="xcms"; version="3.20.0"; sha256="1gj0nd90c6ykwn1n7xndzrgfv5dzy0y2lh3bf8120nacccgxl2qx"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MsFeatures MSnbase mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors SummarizedExperiment]; }; - xcore = derive2 { name="xcore"; version="1.2.0"; sha256="195gcnpyqn2slvjnj0cvsc79csj505ky8g3pghhjijdjybpbqg4z"; depends=[DelayedArray edgeR foreach GenomicRanges glmnet IRanges iterators magrittr Matrix MultiAssayExperiment S4Vectors]; }; - xmapbridge = derive2 { name="xmapbridge"; version="1.56.0"; sha256="0wxr3db2daj4xlr9df6iqwm00m71kln7rhqnq2ckdsricblanhs7"; depends=[]; }; - yamss = derive2 { name="yamss"; version="1.24.0"; sha256="0bh06mncjrkihz2j29hasbipfl50x7393wshdcnlxrs5rrq73r0n"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; - yarn = derive2 { name="yarn"; version="1.24.0"; sha256="0sqbll7ja0qr8r28dqmydmkvg4ijfm7z8hbrsrz3xxdan70bmd2r"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; - zFPKM = derive2 { name="zFPKM"; version="1.20.0"; sha256="1wsmv4fld4s7l0qh84ghizq8k388ybdz9hzzis2gn1nn57q1c7wi"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; - zellkonverter = derive2 { name="zellkonverter"; version="1.8.0"; sha256="0b14v6lyhfapmfj8j729k5cmgxc4df6wsk2rds0q4y6z4hiwgmxy"; depends=[basilisk cli DelayedArray Matrix reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; - zenith = derive2 { name="zenith"; version="1.0.2"; sha256="1r4n8v8rk8imrzz2zv1falca5xhqm5m4kljg8sa28mhcvxfrk4mn"; depends=[EnrichmentBrowser ggplot2 GSEABase limma msigdbr progress Rdpack reshape2 Rfast tidyr variancePartition]; }; - zinbwave = derive2 { name="zinbwave"; version="1.20.0"; sha256="1356ms5y6fg7ndn8hvs6zsyr0jg6ah7a56qxd2x4xgyjj3xcakbv"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; - zlibbioc = derive2 { name="zlibbioc"; version="1.44.0"; sha256="0c75mf0iw6bgwrn3zxpz1dz03aw7p6a1mfhssk6i1mp24avic9lb"; depends=[]; }; + ABSSeq = derive2 { name="ABSSeq"; version="1.54.0"; sha256="1my2slp88qpb15qidjd646hlslvn8brv6i553h21c4c76jzxzsiz"; depends=[limma locfit]; }; + ABarray = derive2 { name="ABarray"; version="1.68.0"; sha256="0vrsyx06acdkb3hq350zdnx3bqzz43grf1w8n0pmxlcr2dncchv9"; depends=[Biobase multtest]; }; + ACE = derive2 { name="ACE"; version="1.18.0"; sha256="158v25ivbmsh54ywb5spfsd1nrmvfq83s8fkp14i7q5ckr2kvjhm"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; }; + ACME = derive2 { name="ACME"; version="2.56.0"; sha256="1z6j4wy355pljn9wf12zzq4zqrhaik0i2phy7jg89jsys7n2mlxy"; depends=[Biobase BiocGenerics]; }; + ADAM = derive2 { name="ADAM"; version="1.16.0"; sha256="1hy7xdf6v2fqggvc9rdl90gn0l6vfbmvb23c61i8q45s3qsaxksp"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; + ADAMgui = derive2 { name="ADAMgui"; version="1.16.0"; sha256="0jc0sbmmc98z75x73ns3qwcvklvx73wqla87cki8sls6ywa8w93j"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; + ADImpute = derive2 { name="ADImpute"; version="1.10.0"; sha256="0a3r4bkf6g28lgsq21077ag9ba6zrfv6yflawx9fg73zdx4266jp"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; }; + ADaCGH2 = derive2 { name="ADaCGH2"; version="2.40.0"; sha256="1mmckrxhv23kl3g4d3n4hfdm97sfg2k36khzy9i6d73g7c033hsv"; depends=[aCGH bit cluster DNAcopy ff GLAD snapCGH tilingArray waveslim]; }; + AGDEX = derive2 { name="AGDEX"; version="1.48.0"; sha256="0p9qmwhi4ik24m51cvgxnny4yfqv4v0rvra16bj5d3w9bw9yf3an"; depends=[Biobase GSEABase]; }; + AHMassBank = derive2 { name="AHMassBank"; version="1.0.0"; sha256="09k04n9iql3z6rfsck4jqqd3068g7xrwqmhcx49f65yhmvn81fp6"; depends=[AnnotationHubData]; }; + AIMS = derive2 { name="AIMS"; version="1.32.0"; sha256="1mbwv70ypkb3x086css94m89wq9pqzd23i7nar1844vbqpw3j83q"; depends=[Biobase e1071]; }; + ALDEx2 = derive2 { name="ALDEx2"; version="1.32.0"; sha256="0gdkc8qwx3vpk5i09znlfrag7gk87piz61z90k96v6bm6x8sclb8"; depends=[BiocParallel GenomicRanges IRanges multtest Rfast S4Vectors SummarizedExperiment zCompositions]; }; + AMARETTO = derive2 { name="AMARETTO"; version="1.16.0"; sha256="1yp2npw9mdjy0wchbp0y1r1ifyy63hdz2y3y8cia9c76nfv4627f"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; }; + AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.26.0"; sha256="12ml67882lscv05np4m80fg9d48dwkaa6kx5cga6x19kdx6xs2cj"; depends=[]; }; + ANCOMBC = derive2 { name="ANCOMBC"; version="2.2.0"; sha256="1wfbi8xyh2pxpjdv2zhml2l1h8c7fyfl5wyici3nm3rcs00n7m9w"; depends=[CVXR DescTools doParallel doRNG dplyr emmeans energy foreach Hmisc lme4 lmerTest magrittr MASS mia nloptr Rdpack rlang rngtools S4Vectors SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment]; }; + ANF = derive2 { name="ANF"; version="1.22.0"; sha256="08vkkfccfq8j4hanxsmjx5657kkw4qcp46qfhqvp1sd6wym69wzw"; depends=[Biobase igraph MASS RColorBrewer survival]; }; + APAlyzer = derive2 { name="APAlyzer"; version="1.14.0"; sha256="1k1nrrcgx4m37z92mjvz48fx645pbsq5wi6w7h9hg0pfpynmgc26"; depends=[DESeq2 dplyr GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HybridMTest repmis Rsamtools Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; }; + APL = derive2 { name="APL"; version="1.4.0"; sha256="1rdc6rnb3igckg74c5297436rr4wn5bhh8mgx4scw9mry5rx5q15"; depends=[ggplot2 ggrepel magrittr org_Hs_eg_db org_Mm_eg_db plotly reticulate rlang Seurat SingleCellExperiment SummarizedExperiment topGO viridisLite]; }; + ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.40.0"; sha256="001nwl605prg942vmnbb1rwjwgpscpjs27ssic3h10rlmpb65yzp"; depends=[ARRmData]; }; + ASAFE = derive2 { name="ASAFE"; version="1.26.0"; sha256="05xw42552x7by63psb05hvjraax66flg94i331ca61zx107q7fai"; depends=[]; }; + ASEB = derive2 { name="ASEB"; version="1.44.0"; sha256="1dq6b5rg9iw6hdjmd7g0w64z7cxm52yg1cjyv355qs064dx26nph"; depends=[]; }; + ASGSCA = derive2 { name="ASGSCA"; version="1.34.0"; sha256="0vb37rvrb08qvv0i2k9jnqpajzpj044ww05w3kq1kypbby0c84zs"; depends=[MASS Matrix]; }; + ASICS = derive2 { name="ASICS"; version="2.16.0"; sha256="0svl9wnfn9z88j1yyl30b1f3d14h01x4cga8q04x530723xnjws7"; depends=[BiocParallel ggplot2 glmnet gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; }; + ASSET = derive2 { name="ASSET"; version="2.18.0"; sha256="1vksbfd4wd2xcc0nl3wp53vm0jyqy97p0hqps2aml04745vkg023"; depends=[MASS msm rmeta]; }; + ASSIGN = derive2 { name="ASSIGN"; version="1.36.0"; sha256="0d6g4j4fbhhl3rmmmj0vxhqzgvm832rpc5spkh6alchpc1yzh0wn"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; + ASURAT = derive2 { name="ASURAT"; version="1.4.0"; sha256="1dri69qam591hj555m6sz58lq0dgxn9bm2jyzjnbd63y6d21bqg4"; depends=[circlize cluster ComplexHeatmap plot3D Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; + ASpli = derive2 { name="ASpli"; version="2.10.0"; sha256="0462hf7anpmmqq4585kmjilw1q229r38lijbxq8xg0f3m8xvr1ga"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr UpSetR]; }; + ATACCoGAPS = derive2 { name="ATACCoGAPS"; version="1.2.0"; sha256="1vk0iq194pzsjz8v7p7m077r5ngyz6n9kywh49dawdazgc59dyhi"; depends=[BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm10 chromVAR CoGAPS dplyr fgsea GeneOverlap GenomicFeatures GenomicRanges gplots gtools Homo_sapiens IRanges JASPAR2016 motifmatchr msigdbr Mus_musculus projectR rGREAT stringr TFBSTools tidyverse]; }; + ATACseqQC = derive2 { name="ATACseqQC"; version="1.24.0"; sha256="0mcrkmirss484d2mskikyjdz5cmbhdk52yxkffz9g8g5m9lkq5xk"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; + ATACseqTFEA = derive2 { name="ATACseqTFEA"; version="1.2.0"; sha256="1q4mcc1frif09n207i13pmlh3wsfnlbz0b7wir2ghb0rx8jkx5gz"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggrepel IRanges limma Matrix motifmatchr pracma Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; + AUCell = derive2 { name="AUCell"; version="1.22.0"; sha256="1zqjmg8nxxj30lxppl685ihynbz44vw7qm3kwjq6cp83c5556hz9"; depends=[BiocGenerics data_table DelayedArray DelayedMatrixStats GSEABase Matrix mixtools R_utils shiny SummarizedExperiment]; }; + AWFisher = derive2 { name="AWFisher"; version="1.14.0"; sha256="1c6rr1z1rhvn8w1kb3nnjlfacfr22vwm1rsa1xqm2hmghs01bq4x"; depends=[edgeR limma]; }; + AffiXcan = derive2 { name="AffiXcan"; version="1.18.0"; sha256="0nf5dkidar6zp5rvpd7i19gdb7mnam9rmca3z3anxi0pdnalwc9d"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; + AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.46.0"; sha256="14s3kvxcc3qj931bf5ya088flijmn5z89hps3di98kkdsl3w6d4g"; depends=[affy]; }; + AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.50.0"; sha256="1gydc2sy0lf2h83dzr60w9k3ipqd8h62q6764xpn31girwx70rdz"; depends=[affy affycoretools Biobase limma preprocessCore]; }; + AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.38.0"; sha256="1ms3x3x2gvhgllff3nwawg5jlpmgx6dhwll0dghklnv3lssbx4c7"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; + AlphaBeta = derive2 { name="AlphaBeta"; version="1.14.0"; sha256="11431d453xszzjyxr10npnblhlrfw8hl5jgabpxla7cj77w02wnr"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; + AlpsNMR = derive2 { name="AlpsNMR"; version="4.2.0"; sha256="0rp82y7163pjbl7n6fyywh4l0sgzn1z8kp83v0kg7xk3810mj9sm"; depends=[baseline BiocParallel cli dplyr fs future generics ggplot2 glue htmltools magrittr matrixStats mixOmics pcaPP purrr readxl reshape2 rlang rmarkdown scales signal speaq stringr tibble tidyr tidyselect vctrs]; }; + AnVIL = derive2 { name="AnVIL"; version="1.12.3"; sha256="0dx10gcch6csk8nw3ffz4yvn5jf0v80ynsp3dg1az0ybkqyrzbih"; depends=[BiocManager dplyr DT futile_logger htmltools httr jsonlite miniUI rapiclient rlang shiny tibble tidyr tidyselect]; }; + AnVILBilling = derive2 { name="AnVILBilling"; version="1.10.0"; sha256="1nxj5yn87qrzb7g8jxbqzjnllshcrfrjf0midn90xfxxj8lsfxpk"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; + AnVILPublish = derive2 { name="AnVILPublish"; version="1.10.0"; sha256="1b0v6dx667dpfppf69gwahxgk5sf01fzjkl3qsablqi9w7h8cnab"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; }; + AnVILWorkflow = derive2 { name="AnVILWorkflow"; version="0.99.29"; sha256="0if3zszlj679lrqh9hv8vsk25mfblgy7l90ngvqhp722hwik7m41"; depends=[AnVIL httr jsonlite]; }; + Anaquin = derive2 { name="Anaquin"; version="2.24.0"; sha256="0f2xc0pm7ld72fnmqirr0q2a5xfh12cag6s2yysblslh9ajyzcmw"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; + AneuFinder = derive2 { name="AneuFinder"; version="1.28.0"; sha256="1l33yb20pynkvlla1dmgbwjhnhxh067fci0ciryxmbzqwq2sn1kc"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust reshape2 Rsamtools S4Vectors]; }; + AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.62.1"; sha256="0a5brfd010p0ks8b7kvrynirmzv3p74r9vqwv5wyz4kbnasfd1v1"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; + AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.24.0"; sha256="10jkxjmsshrr08c397qvkgrcfwzvrbd2hci1nal4vd5mm77f9cl9"; depends=[GenomicRanges lazyeval]; }; + AnnotationForge = derive2 { name="AnnotationForge"; version="1.42.0"; sha256="0s1k32li3nygg01nv9hbs7n6pabaassxmm4z5jggp6apdzkjpsc7"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; + AnnotationHub = derive2 { name="AnnotationHub"; version="3.8.0"; sha256="0ri8qj5j10bhprkb810c2hl5sl944kpb8rf5lab6nxykzgyz73v0"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; + AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.30.0"; sha256="109gi5cs82j135q00wg9dfx0z5m9bs1kc7s246ym13ik43z0h3qq"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; + ArrayExpress = derive2 { name="ArrayExpress"; version="1.60.0"; sha256="1ib33fw379sakk084csa3pwcc3wvba38ily6mmv2ax1wh16i0pfz"; depends=[Biobase httr jsonlite limma oligo rlang]; }; + AssessORF = derive2 { name="AssessORF"; version="1.18.0"; sha256="16nv6sh7z3l6ff3a7zrixkc04mhrak38q045xlirgljkcragz1c5"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; + BADER = derive2 { name="BADER"; version="1.38.0"; sha256="0g3yvgrarpdcxpvjrxg0gbdcagknh80cr0xyzinzpmiiz0rywmzc"; depends=[]; }; + BAGS = derive2 { name="BAGS"; version="2.40.0"; sha256="08xln2c99j419vqaia4c05qg7brnhpiwnzpyyq5akf6bqfsk6dky"; depends=[Biobase breastCancerVDX]; }; + BANDITS = derive2 { name="BANDITS"; version="1.16.1"; sha256="04l6iy0sij7zhzswhxjzir3xmrjnp6aapp0a93xp01xiv2sgdzni"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; }; + BASiCS = derive2 { name="BASiCS"; version="2.12.1"; sha256="0avp6qsx0s42x995p7vb5qcgjvwrg2rryqlj8c6k3a61dwk15w5s"; depends=[assertthat Biobase BiocGenerics BiocParallel coda cowplot ggExtra ggplot2 hexbin MASS Matrix matrixStats posterior Rcpp RcppArmadillo reshape2 S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment viridis]; }; + BASiCStan = derive2 { name="BASiCStan"; version="1.2.0"; sha256="1kazzinvj6shqxkgyin8pwxb9i1wd6m8as0afzl6wl71xllysyla"; depends=[BASiCS BH glmGamPoi Rcpp RcppEigen RcppParallel rstan rstantools scran scuttle SingleCellExperiment StanHeaders SummarizedExperiment]; }; + BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.30.0"; sha256="0cc7b9wrx5afrmz0xgbwaksciya622b6q6zkq4x14czqbjn51xpf"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; + BCRANK = derive2 { name="BCRANK"; version="1.62.0"; sha256="1gk5zw8zvgv867x800r9yd2yxbbxjnbjl4mgn7409qglmm4wx3n8"; depends=[Biostrings]; }; + BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.18.1"; sha256="17lsgl5mczfk2flkrclxhsqkkpr6mncccywm68l0z02pi5xhd8j7"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; }; + BEARscc = derive2 { name="BEARscc"; version="1.20.0"; sha256="065z6w1w83wnps61bcn7hxn7vl9nhm6kmlrwhkljpciz1s7g39ga"; depends=[data_table ggplot2 SingleCellExperiment]; }; + BEAT = derive2 { name="BEAT"; version="1.38.0"; sha256="1gqq9ypjgvwq4db5n612gysalp02v2d99kwayb6vl6wy9j264bdw"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; + BEclear = derive2 { name="BEclear"; version="2.16.0"; sha256="1sdw69dhrzkcpc7flvp1gkixvpsbrckyg756rlm17hjjwfxlz5lb"; depends=[abind BiocParallel data_table dixonTest futile_logger ids Matrix Rcpp Rdpack]; }; + BG2 = derive2 { name="BG2"; version="1.0.0"; sha256="0qiykg4ljjn5j4xw0p9757rckv2xi0glbhfv8m03drdgngfmnyz1"; depends=[caret GA MASS Matrix memoise]; }; + BGmix = derive2 { name="BGmix"; version="1.59.0"; sha256="16fzgxcy4sk0kd67vzdxqz81s84dvh4bqss9cbl9bn6vhpfsnfyf"; depends=[KernSmooth]; }; + BHC = derive2 { name="BHC"; version="1.52.0"; sha256="0w60h1jr9kwvgg5d6bcrq4gl1aa1v6xrn43ymsc2312019psrrjy"; depends=[]; }; + BLMA = derive2 { name="BLMA"; version="1.24.0"; sha256="0dps76jxfr8d9yca4jgn9mijdh9sa14q5j5z0k423q469ay02bq1"; depends=[Biobase graph GSA limma metafor PADOG ROntoTools]; }; + BOBaFIT = derive2 { name="BOBaFIT"; version="1.4.0"; sha256="11k46qxcdk9nc0n0mrai5zsbhbpqnbbf1jdqyqrxllfr0j3ixa8y"; depends=[dplyr GenomicRanges ggbio ggforce ggplot2 magrittr NbClust plyranges stringr tidyr]; }; + BPRMeth = derive2 { name="BPRMeth"; version="1.26.1"; sha256="0if5x0b2gyifnhyrjcf2z4csc7n4hb4yikh19mgy3iii3ix2psfj"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; + BRAIN = derive2 { name="BRAIN"; version="1.46.0"; sha256="016dg1jadjqwdyrkzfpahyhfpfmrks5fpllgza7ccj2ibps74l8m"; depends=[Biostrings lattice PolynomF]; }; + BRGenomics = derive2 { name="BRGenomics"; version="1.12.0"; sha256="1x97l2dww8za8nhc8zllpzgbdm3mdnwqhyd7lwa8sr20m5n090gn"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + BSgenome = derive2 { name="BSgenome"; version="1.68.0"; sha256="0fx2mkzyhbn8iayw14nr913wd4xhp76b1zjb85akrxaab2dm4zz8"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; }; + BSgenomeForge = derive2 { name="BSgenomeForge"; version="1.0.0"; sha256="1h6wccw3418nzqkal1wyp5sfdxanqnbhjaq240j4zpmsqn023ja6"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb IRanges rtracklayer S4Vectors]; }; + BUMHMM = derive2 { name="BUMHMM"; version="1.24.0"; sha256="0rnggyl7zklia8ra5qbb769x8920lk85aas7fv0c2b3y44dkl7w8"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; + BUS = derive2 { name="BUS"; version="1.56.0"; sha256="1vk6b5f6kw0fywai7wmm6h7fzmbxz9z95ma8g3d1kqafyzs7rnhv"; depends=[infotheo minet]; }; + BUScorrect = derive2 { name="BUScorrect"; version="1.18.0"; sha256="0zjpjfq5561jjm3zkwxf76zwfqx4h01di1f96zig6qgj0vjc5b59"; depends=[gplots SummarizedExperiment]; }; + BUSpaRse = derive2 { name="BUSpaRse"; version="1.14.1"; sha256="12mdzbf3bk5q1l2ba6rjkq8aql246mg3zkb8amssaq9xw6pp90gf"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; }; + BUSseq = derive2 { name="BUSseq"; version="1.6.1"; sha256="0dhnc2cs4vrl7ghf3zkli6ri9l1g7am0kr8ph9zc83mw4h1y48wb"; depends=[gplots S4Vectors SingleCellExperiment SummarizedExperiment]; }; + BaalChIP = derive2 { name="BaalChIP"; version="1.26.0"; sha256="0bp8p7cn59iv08cf4yw9xl1f83dcr6v1kqvggxjals8y4gmls9nz"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; + BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.28.0"; sha256="04bzb3i461gwkq9ygkjljpjk32c3arqr08hfzxyig1sarrryzl3q"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.44.0"; sha256="15aqf2s51gl6gcnv24170v9hlq1vgya58qh1f5vjmark7j2k8vvm"; depends=[RCurl RJSONIO]; }; + Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.36.0"; sha256="0rywqfvb5bya6imxy39h6pn7a6zb4gqsgk9mxn5rnbpksql713fx"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; + BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.28.0"; sha256="13jn7dz9sp6n456r0n1zkwpqd5qxm627picn4f05cvim9yakak4v"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; + BatchQC = derive2 { name="BatchQC"; version="1.28.0"; sha256="1gcihwwh8h6hdv8hpwrh5y2hxlhw01axbzch0w41a0434bb58a3j"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; + BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.26.0"; sha256="08ff13wdfxkywfabsz2qnmky87za63j5i1rh6jz1x73acncmj6i7"; depends=[Biobase]; }; + BayesSpace = derive2 { name="BayesSpace"; version="1.10.1"; sha256="1vf1qk19708vxxlcqzw2crxzxvfxh0d7svm2vsv54614safzirxf"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; + BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.52.0"; sha256="0hm4brxg2rxazdcnhjiz6f4di2q8wssrrp35m79vm93sac9w42y3"; depends=[]; }; + BgeeCall = derive2 { name="BgeeCall"; version="1.16.0"; sha256="0j83scxpq51bhxwfps7chcawzsqrd7pk7x2jg29zj4zbp1jbrnl0"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; }; + BgeeDB = derive2 { name="BgeeDB"; version="2.26.0"; sha256="1s6v17bavidlfy6habi4bv6lmwkrx8c5was1zcq0kb05qdvpn4ph"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; + BiFET = derive2 { name="BiFET"; version="1.20.0"; sha256="05lwz2pw2vnhmlhp5vv9j45jrc5ssdw4lx6mkxnsvds8zl3y9294"; depends=[GenomicRanges poibin]; }; + BiGGR = derive2 { name="BiGGR"; version="1.36.0"; sha256="03pd4a3l912zdfk35flagikqimp01wp76nslid32l43d7yg9p57w"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; + BiRewire = derive2 { name="BiRewire"; version="3.32.0"; sha256="1741raw1834093y5zhgx9jywfgz0wl0idlkynvab2c8vi40kc9a8"; depends=[igraph Matrix Rtsne slam]; }; + BiSeq = derive2 { name="BiSeq"; version="1.40.0"; sha256="1ckk6gf7i1gxbl5k128x7r454vz0xvyjd8bdzagh81d7qvajg19y"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; + BicARE = derive2 { name="BicARE"; version="1.58.0"; sha256="1q7dsvj6nvczs76jcxyy77298vgk4zk083bldmbbgnwparrgjii9"; depends=[Biobase GO_db GSEABase multtest]; }; + BindingSiteFinder = derive2 { name="BindingSiteFinder"; version="1.6.0"; sha256="1659idmjr7n1771xj0jam7d7wjljfgbmhzrs53gdkayagr4zqj76"; depends=[dplyr GenomeInfoDb GenomicRanges ggforce ggplot2 Gviz matrixStats plyr rtracklayer S4Vectors tibble tidyr]; }; + BioCor = derive2 { name="BioCor"; version="1.24.0"; sha256="1aw8yh9l0jbjvkqgyzyr0wmwjh3ppmb0lwg8hxsfcv52ycsmvk7p"; depends=[BiocParallel GSEABase Matrix]; }; + BioMM = derive2 { name="BioMM"; version="1.15.0"; sha256="01lfw0npcclcyqqh2xkhjq9jw0irbk13fsj5y1b3rz1amzzngg6p"; depends=[BiocParallel CMplot e1071 ggplot2 glmnet imager lattice nsprcomp precrec ranger rms topGO vioplot xlsx]; }; + BioMVCClass = derive2 { name="BioMVCClass"; version="1.68.0"; sha256="07iay2dpq3margh1ny2snlc75g7fpfs5bf2gmhv88d31b8blg57r"; depends=[Biobase graph MVCClass Rgraphviz]; }; + BioNAR = derive2 { name="BioNAR"; version="1.2.0"; sha256="0zwvsj1qd71y604f5vmbpg4i2a011ig6aynpp7pg2q7idfdc2djb"; depends=[AnnotationDbi clusterCons cowplot data_table dplyr fgsea ggplot2 ggrepel GO_db igraph latex2exp minpack_lm org_Hs_eg_db poweRlaw Rdpack RSpectra rSpectral scales stringr synaptome_db viridis WGCNA]; }; + BioNERO = derive2 { name="BioNERO"; version="1.8.0"; sha256="0733v4mijf94gn0sbkhiinb3hxlsfqw2l89gx94k88sp3qy2qzvc"; depends=[BiocParallel ComplexHeatmap dynamicTreeCut GENIE3 ggnetwork ggnewscale ggplot2 ggrepel igraph intergraph matrixStats minet NetRep networkD3 patchwork RColorBrewer reshape2 SummarizedExperiment sva WGCNA]; }; + BioNet = derive2 { name="BioNet"; version="1.60.0"; sha256="19caj3aj6gndkxkrd9s2x8v59hcdwdyxrx0ji473c3d5qrykskl1"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; + BioNetStat = derive2 { name="BioNetStat"; version="1.20.0"; sha256="0bvfgppsdih6s70iizd7zh3zkb0hg4s4h1728xmyjqbvkl8fsdf4"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; }; + BioQC = derive2 { name="BioQC"; version="1.28.0"; sha256="0g6imi03l4xm0chx3i9wd2vdy0ls78lnylp294fq0jldl4n6y0nw"; depends=[Biobase edgeR Rcpp]; }; + BioTIP = derive2 { name="BioTIP"; version="1.14.0"; sha256="0lqnxaycrva2092h4swmk6na2pq2kp951dmicyw399djd1i7yj50"; depends=[cluster GenomicRanges igraph MASS psych scran stringr]; }; + Biobase = derive2 { name="Biobase"; version="2.60.0"; sha256="1xjs5nxr3dffllp599hf0cx71a2czqmhf7zj2sp6rz06kcxib905"; depends=[BiocGenerics]; }; + BiocBaseUtils = derive2 { name="BiocBaseUtils"; version="1.2.0"; sha256="143fmjbi8spaj3njvc1xvsjszfxs7bv3vxik8pisw5y8lqzx7hqm"; depends=[]; }; + BiocCheck = derive2 { name="BiocCheck"; version="1.36.0"; sha256="15f4jx4rkhi6aakdmy23dh3nlb2psaxkvwvrbya9vlsf5lmhajf9"; depends=[BiocFileCache BiocManager biocViews codetools graph httr knitr stringdist]; }; + BiocDockerManager = derive2 { name="BiocDockerManager"; version="1.11.0"; sha256="0w393f14i253pnk0jzf2ci4g5cnxshwdjmix2r8arlnadh7spjyk"; depends=[dplyr httr memoise readr whisker]; }; + BiocFHIR = derive2 { name="BiocFHIR"; version="1.2.0"; sha256="1i2yi3430gb5zhfap2yiwhwmgy34011hdk5gycb722342sl99hw4"; depends=[BiocBaseUtils dplyr DT graph jsonlite shiny tidyr visNetwork]; }; + BiocFileCache = derive2 { name="BiocFileCache"; version="2.8.0"; sha256="1qk1n50arlk0mfkv9p3zl3lqbapzfkjdbadv51hsp4h9lyaw9sbg"; depends=[curl DBI dbplyr dplyr filelock httr RSQLite]; }; + BiocGenerics = derive2 { name="BiocGenerics"; version="0.46.0"; sha256="19kwpis282i8x31xlh8nc3z6vvn23p3wpx7wmrqhclf8ymq61c7z"; depends=[]; }; + BiocHail = derive2 { name="BiocHail"; version="1.0.0"; sha256="0ffqhgmz5x5fy80la72fv3b93kzr52dpancddqw9hdg8ms7bxhdw"; depends=[basilisk BiocFileCache BiocGenerics dplyr reticulate]; }; + BiocHubsShiny = derive2 { name="BiocHubsShiny"; version="1.0.0"; sha256="0rb73yi26wqayh5p1mf0nygpa9qyydasflc9whrvsafy8g4cfjy7"; depends=[AnnotationHub DT ExperimentHub htmlwidgets S4Vectors shiny shinyAce shinyjs shinythemes shinytoastr]; }; + BiocIO = derive2 { name="BiocIO"; version="1.10.0"; sha256="03hslg7k6khchf54gmlbkvwbkfn5ppz0wp7lh75gsnr0licsjkwx"; depends=[BiocGenerics S4Vectors]; }; + BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.18.0"; sha256="1i4b37n9darizfq9i4vvbnxgrwhkvvd25a4cpfjv7nqywjfbsfjd"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; + BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.20.0"; sha256="11135a4l0vn84qmpyclz052zy45s0m38av94604jqxgb51q9lwyf"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr MASS plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; + BiocParallel = derive2 { name="BiocParallel"; version="1.34.2"; sha256="0j0yi0g0zri0liy9xm2j3k848smhib5mmkvwcw6281iwnpn7yypq"; depends=[BH codetools cpp11 futile_logger snow]; }; + BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.18.0"; sha256="0s51dd9kjlh5vckwmynvahvg1pzl2ddvfn3s2kz77m0l0nbh7zfx"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rorcid rvest stringr tibble xml2]; }; + BiocSet = derive2 { name="BiocSet"; version="1.14.0"; sha256="1q5794gsinpy9hv5n1vx79bkqxi1jxzxjl95jlw9pqjmlnki07i5"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; + BiocSingular = derive2 { name="BiocSingular"; version="1.16.0"; sha256="1a33zsw353pryq30178sbj9jzsmb4m7spqbx11hsicri8s1c0lb9"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; + BiocSklearn = derive2 { name="BiocSklearn"; version="1.22.0"; sha256="0ggzln6ld4a4a3n2swssm11saj0pnqgsfibd0w1aa4k0q2i5m3dy"; depends=[basilisk reticulate SummarizedExperiment]; }; + BiocStyle = derive2 { name="BiocStyle"; version="2.28.0"; sha256="04npnfmz1p1vpwrdsim309k7518i4p1li04xnmw8c9zgdb6yl61a"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; + BiocVersion = derive2 { name="BiocVersion"; version="3.17.1"; sha256="0n29adnb62agp9li8rmn68z653d2m41iy9zjz75h43a05drlgp33"; depends=[]; }; + BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.26.0"; sha256="1zvjj0hpqwdv7yifqwyb14166ppxw91d964gz4xclism5z5lvyln"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; }; + Biostrings = derive2 { name="Biostrings"; version="2.68.1"; sha256="13cnjbq2iykv83ycb4151d7yys21s3v15fc72v3s02m1i92lqyq4"; depends=[BiocGenerics crayon GenomeInfoDb IRanges S4Vectors XVector]; }; + BloodGen3Module = derive2 { name="BloodGen3Module"; version="1.8.0"; sha256="167wpz0s9xlgpp1d3rfy7p76wgmsqlxcj9g7dbz3y0qv7iilngck"; depends=[circlize ComplexHeatmap ExperimentHub ggplot2 gtools limma matrixStats preprocessCore randomcoloR reshape2 SummarizedExperiment testthat V8]; }; + BridgeDbR = derive2 { name="BridgeDbR"; version="2.10.0"; sha256="0372bafv2nxs61wr3dinn6px7qvbswysnacv2xdrp3gm5i1wjzsi"; depends=[curl rJava]; }; + BrowserViz = derive2 { name="BrowserViz"; version="2.22.0"; sha256="14ddcfl73bi4ivd6wqp9xfxaf7fx89gh6qzf91psj44vyvzmdar3"; depends=[BiocGenerics httpuv jsonlite]; }; + BubbleTree = derive2 { name="BubbleTree"; version="2.30.0"; sha256="17c97x8g34fqsq3cnj4cp4cjignn7d8m31k1msinxy92kndij3sw"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; + BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.64.0"; sha256="0sjz4ymqdn57l6cr0968w5nbhp5fm386cf2waxph8n7s1w4lraf3"; depends=[]; }; + BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.64.0"; sha256="064h61zik7d7d4lhzs5s60d4dxcd62r6wn5kskf77s1s8g87c62r"; depends=[BufferedMatrix]; }; + BumpyMatrix = derive2 { name="BumpyMatrix"; version="1.8.0"; sha256="021xn5d08phmwv6g8a5d4ap5kcf5syhm6vpr784l4k54lflssr5i"; depends=[IRanges Matrix S4Vectors]; }; + CAEN = derive2 { name="CAEN"; version="1.8.0"; sha256="050wqvjkayrrlcghqbh8i9myq6wrl86h85mjzdbaszba4nzkhl0a"; depends=[PoiClaClu SummarizedExperiment]; }; + CAFE = derive2 { name="CAFE"; version="1.36.0"; sha256="1l8ynhhs6q141ca83l2vca1nyaizi9dh89p1gwhl95ay17hwbkqj"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; + CAGEfightR = derive2 { name="CAGEfightR"; version="1.20.0"; sha256="1a2a2ksmmd1gm016lbyxc76csasp949lx35x1cidlvak03w5fh3k"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; + CAGEr = derive2 { name="CAGEr"; version="2.6.0"; sha256="0m0v7c9krj8xp51xaxw2kyk5d98rz5dc3x35qm3n498zidp3kac2"; depends=[BiocGenerics BiocParallel BSgenome CAGEfightR data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; + CAMERA = derive2 { name="CAMERA"; version="1.56.0"; sha256="1asp5950fjr3xq5b1h3ma7jg6190w217mlxikxdp7kxgj7pkwmly"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; + CARNIVAL = derive2 { name="CARNIVAL"; version="2.10.0"; sha256="1drxd6xhsbxw9c7hbcq1kq5zda8ma0pmp19bfpahx3vxgmac8h19"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr tibble tidyr]; }; + CATALYST = derive2 { name="CATALYST"; version="1.24.0"; sha256="0f6h0qngv7my83k402rydvi1pla695r5kxq02k1s5caxcsi1caza"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; + CBEA = derive2 { name="CBEA"; version="1.3.0"; sha256="0yrqrdyx5ccwc7ib5sc7ahvahgfgaj50pqk1az1ac07qm3yj098z"; depends=[BiocParallel BiocSet dplyr fitdistrplus generics glue goftest lmom magrittr mixtools Rcpp rlang SummarizedExperiment tibble tidyr TreeSummarizedExperiment]; }; + CBNplot = derive2 { name="CBNplot"; version="1.0.0"; sha256="1d46jjzby2i98brd717rffk5jin6j2gg56pj4iv5xmcdyqmq6wak"; depends=[BiocFileCache bnlearn clusterProfiler depmap dplyr enrichplot ExperimentHub ggdist ggforce ggplot2 ggraph graphite graphlayouts igraph magrittr oaqc org_Hs_eg_db patchwork purrr pvclust reshape2 rlang Rmpfr stringr tidyr]; }; + CCPROMISE = derive2 { name="CCPROMISE"; version="1.26.0"; sha256="1qhi3g2yqnps474whi0c1k69sn9bbv11q38v9s6vad0dk5swfg24"; depends=[Biobase CCP GSEABase PROMISE]; }; + CEMiTool = derive2 { name="CEMiTool"; version="1.24.0"; sha256="128bvfzb5jr1ksi3ac8yq42q92pgfy17rc5ljlsg9cqyyfvfhdz2"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; + CFAssay = derive2 { name="CFAssay"; version="1.34.0"; sha256="1sk4c8l7lw35rcr9vsfx791khlna4widbkrjwpcyrkmwp0xmbj45"; depends=[]; }; + CGEN = derive2 { name="CGEN"; version="3.36.1"; sha256="1g3xwfwqa4r4198m76mgbs59b6lpfyah2ylq5aapi51h4vyk29p9"; depends=[mvtnorm survival]; }; + CGHbase = derive2 { name="CGHbase"; version="1.60.0"; sha256="1r050acahvfp2ib88sy9xj4yjzy2d8h73hndi1s075h0zv12mjj7"; depends=[Biobase marray]; }; + CGHcall = derive2 { name="CGHcall"; version="2.62.0"; sha256="02d8j0al062k33h6n3ihn7kwbqp3pjwg9zzbr45ay1m1jm6bappi"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; + CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.54.0"; sha256="0ch8ql537fmzg7clwmmxiwginmzvg3py2ypgcjz3mb7jjr3zihcd"; depends=[Biobase CGHbase CGHcall]; }; + CGHregions = derive2 { name="CGHregions"; version="1.58.0"; sha256="0y0mgwfls15z17wyf02i2zlk9kycfcw9qgc2vxgf2b5dqjdf96as"; depends=[Biobase CGHbase]; }; + CHETAH = derive2 { name="CHETAH"; version="1.16.0"; sha256="19qaaczi87jy2g4wimlcdpalfflk8l8jpfsnimbi71gjm0sprq7m"; depends=[bioDist corrplot cowplot dendextend ggplot2 pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; }; + CHRONOS = derive2 { name="CHRONOS"; version="1.28.0"; sha256="1gjrzvjray5q3cpgnwhznchq3kb2ld9cfys8rrggn8dmfpazfxb0"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; + CIMICE = derive2 { name="CIMICE"; version="1.8.0"; sha256="0k0w3bhgiry22pmmdcxjfvq4fvrj6k8q473xad87mv8dssp1zxh1"; depends=[assertthat dplyr expm ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr tidygraph tidyr visNetwork]; }; + CINdex = derive2 { name="CINdex"; version="1.28.0"; sha256="0s8iarpci8cnrq7p29vrbw4sw5i27kc0j18xr07fhmw7134gbjz8"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; + CMA = derive2 { name="CMA"; version="1.58.0"; sha256="0yq99brrgjz804r7cbqr4w304lk4pf77v96ya91b9di7z2vv6ahk"; depends=[Biobase]; }; + CNAnorm = derive2 { name="CNAnorm"; version="1.46.1"; sha256="1x3fr0xh0jfg1m7lcgdj04yywnlldk1b4fd455gb5l24dnikwak5"; depends=[DNAcopy]; }; + CNEr = derive2 { name="CNEr"; version="1.36.0"; sha256="04arfcr2ay71hyy0xsh6jzappmcnnzfr1nyj1l7dqhhhk81ksjfd"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; + CNORdt = derive2 { name="CNORdt"; version="1.42.0"; sha256="116bpjdq7633lrfi2znlrpjv8w1k7v0qpnia9ccpjzg3xs7z0qjq"; depends=[abind CellNOptR]; }; + CNORfeeder = derive2 { name="CNORfeeder"; version="1.40.0"; sha256="0lpbkcxh0430jhrjmcnsxmh9jlrbzf5xp81mb73kqyv49amk0c4c"; depends=[CellNOptR graph]; }; + CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.42.0"; sha256="1pnrzlnnm6chi03p5mnrq86hyqlvlk9amr9z8wm8j8q2qm97ifvl"; depends=[CellNOptR nloptr]; }; + CNORode = derive2 { name="CNORode"; version="1.42.0"; sha256="116hqc5vwds4bkifbh6wz19fm624kn3fz1dfq5283d3jxrwdpsic"; depends=[CellNOptR genalg knitr]; }; + CNTools = derive2 { name="CNTools"; version="1.56.0"; sha256="0b3wxywc6dm91n0l9k4amm1517a2hn5vzs82glc877q5l0kwmkdc"; depends=[genefilter]; }; + CNVMetrics = derive2 { name="CNVMetrics"; version="1.4.0"; sha256="08vavilwfxgzyrl28z5da37yz9iwgfqnnmfhwylgz6m6k1h2vcv2"; depends=[BiocParallel GenomicRanges gridExtra IRanges magrittr pheatmap S4Vectors]; }; + CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.32.0"; sha256="0adhi9d5cm7fqq9qzwy7s4gqbiy65jk167f9k3fdml0sgri5m7iy"; depends=[BiocGenerics exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; + CNVRanger = derive2 { name="CNVRanger"; version="1.16.3"; sha256="0nq3ly5gibs4bw8gqp4sji1kjih2kj75d01hbw3m8kir9k0xb6dd"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; + CNVfilteR = derive2 { name="CNVfilteR"; version="1.14.0"; sha256="1nim8vi5y4d3iq3szzj7qsxc0msb93p65415pflx6ai3i0rzvd4k"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; + CNVgears = derive2 { name="CNVgears"; version="1.8.0"; sha256="1p7dxzkna3czkpsidj586hfwhymrjwvjr6q5f2pq7zlmpn6f8svx"; depends=[data_table ggplot2]; }; + CNViz = derive2 { name="CNViz"; version="1.8.0"; sha256="1wg8yhc4g8dcs1lm9r1xh1wjmc7x7i0qp5wrp5yp1f0kn4lsz7g2"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; }; + CNVrd2 = derive2 { name="CNVrd2"; version="1.38.0"; sha256="1qqgsibb5190c29q01ns8z26gsmkjn8vka2yygv6gv9a3jz4gk9c"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; + COCOA = derive2 { name="COCOA"; version="2.14.0"; sha256="04gh7i719ff5zmmc4bsjqpdq1asjvn1yj51qg7cz41ssmgwhkr8q"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; }; + CODEX = derive2 { name="CODEX"; version="1.32.0"; sha256="0xgsy5b959rdjc548jc8qh9wxnhvgigg07cnbb2l2mgrpxj7v3hr"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; + COHCAP = derive2 { name="COHCAP"; version="1.46.0"; sha256="1rs361c0mmk3ixa17s0xab1wqmss89yn4s4ipmk9mfjiip0vv8na"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; + COMPASS = derive2 { name="COMPASS"; version="1.38.1"; sha256="0nn36rwhprxy5192prx12agzjmkyvgl6ds4lknic9lsw4hiiapph"; depends=[abind BiocStyle clue coda data_table dplyr foreach knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; + CONFESS = derive2 { name="CONFESS"; version="1.28.0"; sha256="0yzsm0nh9sx3ifb6jn2q266c4845pnwhlzy3fxs239ah0rpixbhy"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; + CONSTANd = derive2 { name="CONSTANd"; version="1.8.0"; sha256="083pqvzxd3svy8g9qrv08221dr2rcwj9jknask2h227zi4id1lwi"; depends=[]; }; + CORREP = derive2 { name="CORREP"; version="1.66.0"; sha256="1gsjkn72npj78xs2j00ny5vcykfx9j6j41nckk2lnmsq2vynjj95"; depends=[e1071]; }; + COSNet = derive2 { name="COSNet"; version="1.34.0"; sha256="1qjayfvb4iy8jpyq547gs2x66p99j56v6zd443rjn0rrwqyrxw9m"; depends=[]; }; + COTAN = derive2 { name="COTAN"; version="2.0.3"; sha256="0cv7jp5zfxpm32pp3w5hk22fjyg9fdrcvry1d70r1zgib2dff236"; depends=[assertthat circlize ComplexHeatmap dendextend dplyr factoextra ggplot2 ggrepel ggthemes irlba Matrix parallelly plyr RColorBrewer Rfast rlang scales Seurat stringr tibble tidyr umap withr zeallot]; }; + CRISPRseek = derive2 { name="CRISPRseek"; version="1.40.0"; sha256="0gp96c3gip48yd2ffw6n9p30ib7yiz7p4h57i0kc4qv3lnj31dqi"; depends=[BiocGenerics Biostrings BSgenome data_table DelayedArray dplyr GenomeInfoDb GenomicRanges hash IRanges keras mltools reticulate rhdf5 S4Vectors seqinr XVector]; }; + CRImage = derive2 { name="CRImage"; version="1.48.0"; sha256="11ikg8mil9slnjxcl45b97i2yng8bh1fdcyf92bwhrwnamp0asfc"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; + CSAR = derive2 { name="CSAR"; version="1.52.0"; sha256="0p3r2x7gn4gmsdmymwi1spd4dpc8phgbg7zw8hwbif0s28vpz40m"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + CSSP = derive2 { name="CSSP"; version="1.37.0"; sha256="08l8ag82n9hdrj31m37f4fm9kvxjx7xyprdlbi20aqrzsrd227gr"; depends=[]; }; + CSSQ = derive2 { name="CSSQ"; version="1.12.0"; sha256="0w63kvc4dsl2ck99qhl12m9yl0ha6dk5lzn3bjci2r69rqlzd8q8"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + CTDquerier = derive2 { name="CTDquerier"; version="2.7.0"; sha256="09zm18x7kkkcga7989628aiqmr187n556849bjyv588lrrjkkkkx"; depends=[BiocFileCache ggplot2 gridExtra igraph RCurl S4Vectors stringdist stringr]; }; + CTSV = derive2 { name="CTSV"; version="1.2.0"; sha256="0qg3pw6wqylxl2158sn4s2wf0v4693ljlqmsqw0i88r3gm0y7s9r"; depends=[BiocParallel knitr pscl qvalue SpatialExperiment SummarizedExperiment]; }; + CTdata = derive2 { name="CTdata"; version="1.0.1"; sha256="1bsbxqlgw701cddh3gxmsxskr1gb9zhni0nb8y7j6360di7bjvc2"; depends=[ExperimentHub]; }; + CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.26.0"; sha256="06lw7b43fwh554870w71i676q6gm6kx53580cgg17a7prdjndkmr"; depends=[cluster ConsensusClusterPlus impute limma NMF sigclust survival]; }; + Cardinal = derive2 { name="Cardinal"; version="3.2.1"; sha256="02kr2bxikkxbiqnp6rf9n4pdsqv20fqnhki36jkfd31314z0hw95"; depends=[Biobase BiocGenerics BiocParallel EBImage irlba magrittr Matrix matter mclust nlme ProtGenerics S4Vectors signal sp viridisLite]; }; + Category = derive2 { name="Category"; version="2.66.0"; sha256="1wjf6xbnys7nv8z4xrzck1wk5xifkdni672kigs0aqdxqj8d80f5"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; + CausalR = derive2 { name="CausalR"; version="1.32.0"; sha256="0qgsfjcz13v13hhril0habija952aj7j9x3xgpxk4ifwmpd8jrsj"; depends=[igraph]; }; + CeTF = derive2 { name="CeTF"; version="1.12.0"; sha256="1s5qvhy2ypqznap69ryih4q8hhvbb8yk1kk31z3bmrpy7waa1hqw"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 dplyr GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment]; }; + CellBarcode = derive2 { name="CellBarcode"; version="1.6.0"; sha256="0sfp3ybgshk83vmr7jz4kvk1dkwpbi8vmzqsygl07ry0k4yrdlff"; depends=[BH Biostrings Ckmeans_1d_dp data_table egg ggplot2 magrittr plyr Rcpp S4Vectors seqinr ShortRead stringr zlibbioc]; }; + CellBench = derive2 { name="CellBench"; version="1.16.0"; sha256="14g8z1rjmrrxzq6b181806v9lzwax7xhzjqcis1izb1sm25vj86n"; depends=[assertthat BiocFileCache BiocGenerics BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; }; + CellMapper = derive2 { name="CellMapper"; version="1.26.0"; sha256="1cwfhln8hm08aia8262zis89n4n29165brhxgdg100fx7capfqrr"; depends=[S4Vectors]; }; + CellMixS = derive2 { name="CellMixS"; version="1.16.0"; sha256="175l5sdp5v1ncvjsw3r8g15qw15afmyczz499jxld1z8bqyjv9b6"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; }; + CellNOptR = derive2 { name="CellNOptR"; version="1.46.0"; sha256="0wsyrpj0kdkl4ckxb87y81zj5gsvsswcnp4g88z6gdf4lgq4mc5x"; depends=[ggplot2 graph igraph RBGL RCurl Rgraphviz rmarkdown stringi stringr XML]; }; + CellScore = derive2 { name="CellScore"; version="1.20.0"; sha256="11dlbck7fhnfhvg1fyzgh62vgf5bfn74qisarwxmk0cq08cmcmqr"; depends=[Biobase gplots lsa RColorBrewer squash]; }; + CellTrails = derive2 { name="CellTrails"; version="1.18.0"; sha256="1w14k63b4wfxwllrj0xzpf6ggvmnkxxhhz9mb3m7a4qd2dldgbgs"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; + CellaRepertorium = derive2 { name="CellaRepertorium"; version="1.10.0"; sha256="1p683c340kah5z9v2hyjbwsa242vmqnlk3fxjf4pflz43llrg6c8"; depends=[BiocGenerics Biostrings dplyr forcats generics glue Matrix progress purrr Rcpp reshape2 rlang S4Vectors stringr tibble tidyr]; }; + CelliD = derive2 { name="CelliD"; version="1.8.1"; sha256="0vigvqjrlqbi5kviaj8qvyq3v8afgbc5pjrz7zmx2ckf4hdp0g03"; depends=[BiocParallel data_table fastmatch fgsea ggplot2 glue irlba Matrix matrixStats pbapply Rcpp RcppArmadillo reticulate Rtsne scater Seurat SingleCellExperiment stringr SummarizedExperiment tictoc umap]; }; + Cepo = derive2 { name="Cepo"; version="1.6.0"; sha256="1rllwj4zm9hkghjd7wh55a3znqk6h9nadcqxrmdf210325hm21ya"; depends=[BiocParallel DelayedArray DelayedMatrixStats dplyr ggplot2 GSEABase HDF5Array patchwork reshape2 rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; + CexoR = derive2 { name="CexoR"; version="1.38.0"; sha256="0gzdpjyg25cig4ylc6v5b7bwqj12a50ydfqfc8h0dism6f1i6acs"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; + ChAMP = derive2 { name="ChAMP"; version="2.30.0"; sha256="1px2pm90lxwh0yn7h1kmmf94flhjs5p4i0iav7ya1xfybyg4w2zc"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; + ChIC = derive2 { name="ChIC"; version="1.19.0"; sha256="0zbmhixxn3skn8csz93fyyfamz1n3gzjzb2caw8ybi2cysgzz5ys"; depends=[BiocGenerics caret caTools ChIC_data genomeIntervals GenomicRanges IRanges progress randomForest Rsamtools S4Vectors]; }; + ChIPComp = derive2 { name="ChIPComp"; version="1.30.0"; sha256="1v27bqik5cgcvs1kb67s52r56v6fakvmi81iybvvvbxvcn1dmy9r"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; + ChIPQC = derive2 { name="ChIPQC"; version="1.36.0"; sha256="0fpgjiixkb885dbhh70r0g6mib1yz2cyfw3v5wcjxhbzfrn27wqh"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; + ChIPXpress = derive2 { name="ChIPXpress"; version="1.44.0"; sha256="08qzmjvz3v5ji9lzpxlhxgv3d0smmyvai49yphbbvz9vv57hgjkf"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; + ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.22.0"; sha256="1r8d5bvmmgcxw8kxzdgymwnyg0lspjv9sfjd6pfrhjn88sjz22xv"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RColorBrewer RcppRoll ROCR rtracklayer S4Vectors]; }; + ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.24.0"; sha256="1iysqs2k0xxiwd48ymahf6rywwj9ingjcfmnhx9d1x6w2h00v7lz"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; + ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.34.1"; sha256="0y9qskkdkl2vdbn66md4xisny0i7g2biasylp357vrkv41d3al6l"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; }; + ChIPseeker = derive2 { name="ChIPseeker"; version="1.36.0"; sha256="0nngygci1g8bb3rsica348zi59hskr6hf8319csia6cman89gvqm"; depends=[AnnotationDbi aplot BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix rtracklayer S4Vectors tibble TxDb_Hsapiens_UCSC_hg19_knownGene yulab_utils]; }; + ChIPseqR = derive2 { name="ChIPseqR"; version="1.54.0"; sha256="1319vkb618vv4vqs8lzg71wrzsfcwx7al272h4dy5x10j3ag7z4n"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; + ChIPsim = derive2 { name="ChIPsim"; version="1.54.0"; sha256="153ns4n7idannm80jdxlbjvbzazajc4m22w69m2s9x3k05g1265p"; depends=[Biostrings IRanges ShortRead XVector]; }; + ChemmineOB = derive2 { name="ChemmineOB"; version="1.38.0"; sha256="0l44d6l078k1w5nf7i4sarah1zn30zqjmcj9qpy4hhg97dfy45ci"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; + ChemmineR = derive2 { name="ChemmineR"; version="3.52.0"; sha256="1m4vgq3z0kya7kbncawr9csvbwnh74mh012w7g2ialwd3nwdf91x"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra jsonlite png Rcpp RCurl rjson rsvg stringi]; }; + Chicago = derive2 { name="Chicago"; version="1.28.0"; sha256="04h4a5nyc78jlsg9pj8ay559bwb8y1nm80v9zvyxd7r490yn7k7s"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; + ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.54.0"; sha256="0ry4dcgs924kmzl2wccdmbiihvghcpfv9wmlp8jngnjwx7gkixi3"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; + ChromSCape = derive2 { name="ChromSCape"; version="1.10.0"; sha256="1v5gym0zsbi0jwpgdr442z97zw295f0h335jndzbi23n4nfj6lxv"; depends=[batchelor BiocParallel colorRamps colourpicker ConsensusClusterPlus coop DelayedArray dplyr DT edgeR forcats fs GenomicRanges gggenes ggplot2 ggrepel gridExtra IRanges irlba jsonlite kableExtra Matrix matrixTests msigdbr plotly qs qualV Rcpp rlist Rsamtools rtracklayer Rtsne S4Vectors scater scran shiny shinycssloaders shinydashboard shinydashboardPlus shinyFiles shinyhelper shinyjs shinyWidgets SingleCellExperiment stringdist stringr SummarizedExperiment tibble tidyr umap viridis]; }; + CircSeqAlignTk = derive2 { name="CircSeqAlignTk"; version="1.2.0"; sha256="199ynhjl4hmgxwgzpg2wp4k5jrw737c7v40yjg7ds17j62hs4ari"; depends=[BiocGenerics Biostrings dplyr ggplot2 IRanges magrittr Rbowtie2 Rhisat2 rlang Rsamtools S4Vectors ShortRead tidyr]; }; + CiteFuse = derive2 { name="CiteFuse"; version="1.12.0"; sha256="1cvg7gnnjxgickqd3hm90dv5zi1vr3xv0l51qll7gfksck75d8fr"; depends=[compositions cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap randomForest Rcpp reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SummarizedExperiment uwot]; }; + ClassifyR = derive2 { name="ClassifyR"; version="3.4.3"; sha256="0pglnh3cxwmqw2wx2rj9sjvgbl3rlabbaa3vsbjzcf7l9m6na3l0"; depends=[BiocParallel dplyr genefilter generics ggplot2 ggpubr MultiAssayExperiment ranger reshape2 rlang S4Vectors survival tidyr]; }; + Clomial = derive2 { name="Clomial"; version="1.36.0"; sha256="1y4jjq9vxgi6m5g94j0j4xvcbpba7pv6y284ig3m4m83pq9xbq5d"; depends=[matrixStats permute]; }; + Clonality = derive2 { name="Clonality"; version="1.47.0"; sha256="0yxwwc0sl3impvzr0bmjmdn65z6qx6lf5pwik2p8wxxgaybvff9r"; depends=[DNAcopy]; }; + CluMSID = derive2 { name="CluMSID"; version="1.16.0"; sha256="1p210mc7akhsxbq8daqk9lqxnmlykmjgrsyliiq3n7qm6z4md2pl"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; }; + ClusterJudge = derive2 { name="ClusterJudge"; version="1.22.0"; sha256="0xikw8zycgslch2nlvmksjxfzl8bnal0p7dnijgm48kgs1h78ikl"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; + ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.28.0"; sha256="0hpkrf71blj2hc7yr7grrpffwyyhpzqm5i2mc2fyii8f7hbv77fv"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; + CoCiteStats = derive2 { name="CoCiteStats"; version="1.72.0"; sha256="0xw1vcbv353k610c2zizgfqb5xxrfc7ls55jlaz2qhy8a0592wxz"; depends=[AnnotationDbi org_Hs_eg_db]; }; + CoGAPS = derive2 { name="CoGAPS"; version="3.19.1"; sha256="1khj7hmj6df557khrk58gjiv4r9wv5hq9s9mvx4pajxp0axywfal"; depends=[BH BiocParallel biomaRt cluster dplyr fgsea forcats ggplot2 gplots msigdbr RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + CoRegNet = derive2 { name="CoRegNet"; version="1.38.0"; sha256="19df43l35dkf36dhq8fx8a9gm1grxymrmpcix0b4qmxrzwjp0s8k"; depends=[arules igraph shiny]; }; + CoSIA = derive2 { name="CoSIA"; version="1.0.0"; sha256="1hq2q5m4jl0fb13zai9y1mjv7pgpvh1fnjrlx533lgcnzavm4d1h"; depends=[AnnotationDbi annotationTools biomaRt dplyr ExperimentHub ggplot2 homologene magrittr org_Ce_eg_db org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plotly RColorBrewer readr stringr tibble tidyr tidyselect]; }; + Cogito = derive2 { name="Cogito"; version="1.6.0"; sha256="1xcjkkcc4xdpmdgjgmx867ldjhlghx1w3bmyqfzfdw8s8whz3lvl"; depends=[AnnotationDbi BiocManager entropy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 jsonlite magrittr rmarkdown S4Vectors TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + ComPrAn = derive2 { name="ComPrAn"; version="1.8.0"; sha256="1y9qfkjyiaz7sy16xwijsnr6im5rgqrlyiqk7h74l609bwaq1say"; depends=[data_table dplyr DT forcats ggplot2 magrittr purrr RColorBrewer rio rlang scales shiny shinydashboard shinyjs stringr tibble tidyr VennDiagram]; }; + ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.16.0"; sha256="08jpbw7qns736zq1fwk9lyr4qm7rgzzw3hksv59zwb1458a79pzy"; depends=[circlize clue codetools colorspace digest doParallel foreach GetoptLong GlobalOptions IRanges matrixStats png RColorBrewer]; }; + CompoundDb = derive2 { name="CompoundDb"; version="1.4.0"; sha256="12nb5h1n016kr6riby32mq1642dr1zvwzyimmwhsa4w07l1yk0zj"; depends=[AnnotationFilter Biobase BiocGenerics BiocParallel ChemmineR DBI dbplyr dplyr IRanges jsonlite MetaboCoreUtils MsCoreUtils ProtGenerics RSQLite S4Vectors Spectra tibble xml2]; }; + ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.64.0"; sha256="0ig6xfhd70my5j4xrdy8srg1wi8nb3kcxlrld9py47psrq9vdadm"; depends=[ALL Biobase cluster]; }; + CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.16.0"; sha256="02kf3gn8p3rginin17i4ks9mmi3dq4w3g9bil4s3wjfw5bd2mj2m"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; }; + CoreGx = derive2 { name="CoreGx"; version="2.4.0"; sha256="09pv117g8sxhrij960mparrz1r9vx8s20gmpvn1h667kl1bc0jm9"; depends=[bench Biobase BiocGenerics BiocParallel BumpyMatrix checkmate crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; }; + Cormotif = derive2 { name="Cormotif"; version="1.46.0"; sha256="0x4h5g5nmab8aw7zs6plms6ric6hd1n034gnxrx5lskb1hc2j69l"; depends=[affy limma]; }; + CoverageView = derive2 { name="CoverageView"; version="1.38.0"; sha256="1ci07y75nvvv1mxy23v6jp5xb6n023fvlqh9il5lsdqwyfl5nz9s"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + CrispRVariants = derive2 { name="CrispRVariants"; version="1.28.0"; sha256="0vxywynq5d6vmcswgzbqfzdix1h8q1sv0f4gfyxhg1smx6yq8rzc"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; + CyTOFpower = derive2 { name="CyTOFpower"; version="1.6.0"; sha256="1b5010ryy26k6q2c83qrygwklbwmirffmsc3flrbp2izknwpfwfk"; depends=[CytoGLMM diffcyt dplyr DT ggplot2 magrittr rlang shiny shinyFeedback shinyjs shinyMatrix SummarizedExperiment tibble tidyr]; }; + CytoDx = derive2 { name="CytoDx"; version="1.20.0"; sha256="1yqplz0z8bfnkns9zwnprwfr6xzw2pmnrw0y8avm1wahw3sry4ws"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; + CytoGLMM = derive2 { name="CytoGLMM"; version="1.8.0"; sha256="0nw4x45d77ay75yghkyx1gx15vr5yc3zsbb00j1hcj8m3frz5r1f"; depends=[BiocParallel caret cowplot doParallel dplyr factoextra flexmix ggplot2 ggrepel logging magrittr MASS Matrix mbest pheatmap RColorBrewer rlang stringr strucchange tibble tidyr]; }; + CytoML = derive2 { name="CytoML"; version="2.12.0"; sha256="19rlg15nk2205vma4whpqmvlazww5i3ibxhmk9cljsaj4ql560vf"; depends=[BH Biobase cpp11 cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite openCyto RBGL Rgraphviz Rhdf5lib RProtoBufLib tibble XML yaml]; }; + CytoPipeline = derive2 { name="CytoPipeline"; version="1.0.0"; sha256="0dfk0g1rna10yrm5s4c7w3x61x8chq2rj62pkqrmf2aydq108ajw"; depends=[BiocFileCache BiocParallel diagram flowAI flowCore ggcyto ggplot2 jsonlite PeacoQC rlang scales withr]; }; + DAMEfinder = derive2 { name="DAMEfinder"; version="1.12.0"; sha256="0m8g1sp55mxa0qswpqkzk73myhhy3s49c21hf97sk0lxis5lagcd"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; + DAPAR = derive2 { name="DAPAR"; version="1.32.2"; sha256="1gbcwjwmqdimics2c7dnlwsf5l2fs48mcrjhhyjh0xnsmvgsp16m"; depends=[Biobase DAPARdata foreach highcharter MSnbase]; }; + DART = derive2 { name="DART"; version="1.48.0"; sha256="0rkabvjkh5iimpxspyizpffz69q7pvj1jq3f9704a2p51q60j74n"; depends=[igraph]; }; + DECIPHER = derive2 { name="DECIPHER"; version="2.28.0"; sha256="16z6yk8rr2115z6g1l7fl01binxm29vnxsnsm2wzfvc5vv49927n"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; + DEFormats = derive2 { name="DEFormats"; version="1.28.0"; sha256="1dqiy0q1w3n9r03bxhx2vnk1z5a476rpkzcwl3cn9ghqns2wvmlz"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; + DEGraph = derive2 { name="DEGraph"; version="1.52.0"; sha256="1khlnsq7j9nikzn3x8x99j3m6c2iv5wx8i5qnxbp5cqp82aa1bpb"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; + DEGreport = derive2 { name="DEGreport"; version="1.36.0"; sha256="15xm1l2qgsyzaw820a1fq5qdzh5pj4dmr1hx6s6b6wm2p02cvvai"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr logging magrittr psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; + DEGseq = derive2 { name="DEGseq"; version="1.54.0"; sha256="1lcjbwr3m6wr084gqm7sza04j4811vgpiszr7cc4zr06ab4sasq3"; depends=[qvalue]; }; + DELocal = derive2 { name="DELocal"; version="1.0.0"; sha256="158krqf3lxss4ha0v446cvf8kziv3rligg1bl5zp461gh6wwxqc5"; depends=[DESeq2 dplyr ggplot2 limma matrixStats reshape2 SummarizedExperiment]; }; + DEP = derive2 { name="DEP"; version="1.22.0"; sha256="1sann6zj3gsg15p5z80l65sjdh5gnlp5n95kix43vwprp5y25qn5"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; + DEScan2 = derive2 { name="DEScan2"; version="1.20.1"; sha256="1n4gww1ncxp03rq76fnzzarxszzwdq3fizcf97pr1qcx0cwkqzlv"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; + DESeq2 = derive2 { name="DESeq2"; version="1.40.1"; sha256="1910nvcm1lj5mcg8jdvfql6a6h1wnrgfl616gz942g4ngl18ya3p"; depends=[Biobase BiocGenerics BiocParallel GenomicRanges ggplot2 IRanges locfit matrixStats Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; + DESpace = derive2 { name="DESpace"; version="1.0.0"; sha256="1xrfk4v1rs0lnzdm28b76hp2zdgddhcmiixm2qjmvmif2ak4lvr9"; depends=[assertthat BiocGenerics BiocParallel cowplot data_table dplyr edgeR ggforce ggnewscale ggplot2 ggpubr limma Matrix patchwork S4Vectors scales SpatialExperiment SummarizedExperiment]; }; + DEWSeq = derive2 { name="DEWSeq"; version="1.14.0"; sha256="1bhqzmqrpv76p0qc18shmqvpdfyn1calswwdycizj729v5080l3s"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; + DEXSeq = derive2 { name="DEXSeq"; version="1.46.0"; sha256="0z4i3lsaziq3hprk64akx7jl6b757kmd8k6gv5pn36pavc6x1a0g"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; + DEqMS = derive2 { name="DEqMS"; version="1.18.0"; sha256="0hgra7dvrfqniwz8srnqsx6mhd6pjx4bn9dfy0fyp4sldj8d1d83"; depends=[ggplot2 limma matrixStats]; }; + DEsingle = derive2 { name="DEsingle"; version="1.20.0"; sha256="145kpcp3v4wg7fjq4m1a15ikvwdpqc753217rjpr5p5306j489ra"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; + DEsubs = derive2 { name="DEsubs"; version="1.26.0"; sha256="1mzq5lld6hh1pg6j3z88h3rydr984qb5kh92bzxqqlj8j1lhlmif"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; + DExMA = derive2 { name="DExMA"; version="1.8.0"; sha256="0k6il16z49jczk6kgcp849n44jymid2ck17s3cx2x79dgp6c6x5p"; depends=[Biobase bnstruct DExMAdata GEOquery impute limma pheatmap plyr RColorBrewer scales snpStats sva swamp]; }; + DFP = derive2 { name="DFP"; version="1.58.0"; sha256="1z4d7q5aqb3a5ma438v2y7ikjnlrfncm02adaj5krxlyqcsjksci"; depends=[Biobase]; }; + DIAlignR = derive2 { name="DIAlignR"; version="2.8.0"; sha256="1fms2yrwhgv1qhdq30zzbgqli9ir99iqmi41hgr624x6jrbpy8fy"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; }; + DMCFB = derive2 { name="DMCFB"; version="1.14.0"; sha256="1frp3czy4zry1ml2r93aw2h8arr5bfxlszimcnmqpbca0gxd6lx3"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors speedglm SummarizedExperiment tibble]; }; + DMCHMM = derive2 { name="DMCHMM"; version="1.22.0"; sha256="018m7zz2xjgn0k6ld049dr877m77cax8pyr1r1pji6mxi0mzkwsw"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; + DMRScan = derive2 { name="DMRScan"; version="1.22.0"; sha256="0np16zkbgpxvr92ha55kr4jg11d144wgqrk8x1sc0w3pffllk8x6"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; + DMRcaller = derive2 { name="DMRcaller"; version="1.32.0"; sha256="004n56d49a8bviblany5z9fip7dy5g4zxjz2j50lryhbs256n67y"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; + DMRcate = derive2 { name="DMRcate"; version="2.14.0"; sha256="1kcp0hgxnrcslphdqb25jsicif52r1sk8c7sn73jkdxy4n64idbm"; depends=[bsseq DSS edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; + DMRforPairs = derive2 { name="DMRforPairs"; version="1.35.0"; sha256="1fdj2kk4hy1cy7lvxdcdigzvjsggsrchff10mccwwpycc4h115dj"; depends=[GenomicRanges Gviz R2HTML]; }; + DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.16.0"; sha256="0wwm59dw1fjw34ixwjzf6lvjn3rplqx9bawjfy5v1b12s8szyjii"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; + DNABarcodes = derive2 { name="DNABarcodes"; version="1.30.0"; sha256="1jys0lj92zkqa3bb22fg35q5y8ij5pqhy3yvzg8zc8bjpzdvrg3a"; depends=[BH Matrix Rcpp]; }; + DNAcopy = derive2 { name="DNAcopy"; version="1.74.1"; sha256="1bj87ksvch5cm5zxwgfiiql0j94pvzbpn59wp6bacyip65z7w3ax"; depends=[]; }; + DNAfusion = derive2 { name="DNAfusion"; version="1.2.0"; sha256="1wakfplnc513r31pqbpdvmdc0qqbrh5naizb764jj3nqvs1h3wfj"; depends=[bamsignals BiocBaseUtils BiocGenerics GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools S4Vectors TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + DNAshapeR = derive2 { name="DNAshapeR"; version="1.28.0"; sha256="03sfa8cyfrvww1nihv1dg7d5c5qkf6j2w9d0v5zfww2dp93i504k"; depends=[Biostrings fields GenomicRanges Rcpp]; }; + DOSE = derive2 { name="DOSE"; version="3.26.1"; sha256="1whvgzw8p0nm3kchdndrxj4x3fhmq0vgbz77d54sqq1qri4j35qx"; depends=[AnnotationDbi BiocParallel fgsea ggplot2 GOSemSim HDO_db qvalue reshape2]; }; + DRIMSeq = derive2 { name="DRIMSeq"; version="1.28.0"; sha256="1i9lcp31g94mllkwcyfablj27qr8v7vqk9j96ywrdfpj8dmcrw98"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; + DSS = derive2 { name="DSS"; version="2.48.0"; sha256="1aslbzwqfp609ym98k6cjjf6r1ns9hxcpx4igfjhqf2v0pazz2q8"; depends=[Biobase BiocParallel bsseq]; }; + DTA = derive2 { name="DTA"; version="2.46.0"; sha256="1hi0i76sr0naq06py8bx3cm5wb4v3haz9wa2rnznpzw67svhxci9"; depends=[LSD scatterplot3d]; }; + DaMiRseq = derive2 { name="DaMiRseq"; version="2.12.0"; sha256="1s0zh62rvrhrb9rm5zc4g1w5a638yjzb9mma6dnxhgz4j3ayx8zl"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; + DeMAND = derive2 { name="DeMAND"; version="1.30.0"; sha256="1isnabzk81f4h5r6ax5n9iqyckwym9qpgvi8xdlb2zpgkmz09ahg"; depends=[KernSmooth]; }; + DeMixT = derive2 { name="DeMixT"; version="1.16.0"; sha256="0671pb9400lcg530gja47c2dm8fdw5sk2prkjc8ji8aypiryjfpa"; depends=[base64enc dendextend DSS ggplot2 KernSmooth knitr matrixcalc matrixStats psych Rcpp rmarkdown SummarizedExperiment sva truncdist]; }; + DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.42.0"; sha256="0bmkyci31p7g097i8fvc0s1fz47hv6vp5rcfqqkvclm86wfkkmkc"; depends=[ggplot2 limSolve pcaMethods]; }; + DeepBlueR = derive2 { name="DeepBlueR"; version="1.26.0"; sha256="0xh106a8000v80fwjzjpapgkli47fz1m4kpicp1yxskh3yki5gq1"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; + DeepPINCS = derive2 { name="DeepPINCS"; version="1.8.0"; sha256="0wg6iv53czw23vpkvzyakgs7s4qhqiccb9hpfhbd93xwvd1bw72m"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; + DegNorm = derive2 { name="DegNorm"; version="1.10.1"; sha256="01jg6wgz0117kvjjmsnv8whizyd3iayfsvhgd615hjzz0fm82szp"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors viridis]; }; + DelayedArray = derive2 { name="DelayedArray"; version="0.26.3"; sha256="0m603v0l74nawid61hvqbyb2662c1djqp436p87pk4f04fvws67j"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Arrays S4Vectors]; }; + DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.16.0"; sha256="00668ijn1jd6j503z0ayy0i7i81qazga0bvsa2qlfbbyqyasbmhk"; depends=[BiocGenerics DelayedArray S4Vectors]; }; + DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.22.0"; sha256="1mjdk76vmjzmmll0r73kfdi3x77hpdbk3jgzdqryxg4gna597q7j"; depends=[DelayedArray IRanges Matrix MatrixGenerics matrixStats S4Vectors sparseMatrixStats]; }; + DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.8.0"; sha256="0dly19l7739icsww053ds6lqg26x2z6lmyaf1hsqgpy3lczfr2hv"; depends=[BH DelayedArray dqrng Rcpp]; }; + DelayedTensor = derive2 { name="DelayedTensor"; version="1.6.0"; sha256="18qk3wi15ixjdfkfviy8qaqqs4cvr8dk25bjnr8sq4gnx73iy34p"; depends=[BiocSingular DelayedArray DelayedRandomArray einsum HDF5Array irlba Matrix rTensor]; }; + DepInfeR = derive2 { name="DepInfeR"; version="1.4.0"; sha256="1xw8y5bnki8p8khp4161kfrl5jicv4acf6vds0lfvzblgkh676jr"; depends=[BiocParallel glmnet matrixStats]; }; + DepecheR = derive2 { name="DepecheR"; version="1.16.0"; sha256="1kn1w1fs19gjvg8nhbvj6hyp32h6k81dnal4ab12xl1jgaa3xj5p"; depends=[beanplot doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; + DiffBind = derive2 { name="DiffBind"; version="3.10.0"; sha256="1p5fxfpvjz85a2n1jsmj3niqzymnlsja9b53q2yxvj327qq58z8a"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; + DiffLogo = derive2 { name="DiffLogo"; version="2.24.0"; sha256="0wj9k3nnm5y1j5989i2gngxnhsygm9z5mbm532m174hap0fddpy9"; depends=[cba]; }; + DifferentialRegulation = derive2 { name="DifferentialRegulation"; version="1.4.1"; sha256="0xlvfjimqq2ykkf0dp1ah6vqlmzwkv8bypwyagkl5mh5z51m19vq"; depends=[BANDITS data_table doParallel doRNG foreach ggplot2 MASS Matrix Rcpp RcppArmadillo SingleCellExperiment SummarizedExperiment]; }; + Dino = derive2 { name="Dino"; version="1.6.0"; sha256="12zsj95nd9xvn62bfw45a42bqdqkxhzs4p8r4pww7dslh75hjpzv"; depends=[BiocParallel BiocSingular Matrix matrixStats S4Vectors scran Seurat SingleCellExperiment SummarizedExperiment]; }; + Director = derive2 { name="Director"; version="1.26.0"; sha256="051qx14pby9qnxy9zm5qwsi5mix2lbi1v19px3ybb4q1hykfhaxi"; depends=[htmltools]; }; + DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.42.0"; sha256="1vslg6hp498ar4l1b8rdxscz5wj1xci866j8975wr378lnymb942"; depends=[BiocGenerics IRanges S4Vectors]; }; + DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.16.0"; sha256="0fvp6qxqy181i3bjvq4494lr3iafa98n7mq4wiyqnkqkpxnjz53z"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; + DominoEffect = derive2 { name="DominoEffect"; version="1.20.0"; sha256="09bl4rx019x6r9vf83yyhhfv3x1dibscy6s9npjncxacjhifl67j"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; + Doscheda = derive2 { name="Doscheda"; version="1.22.0"; sha256="03xk9fx21nisjk65zc0wn1dp33z2rihn2vx9wbn4zgfdxjay9dj9"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; + DriverNet = derive2 { name="DriverNet"; version="1.40.0"; sha256="0vzfi6wlijqh29v3dvd07hzp17yck31dnhlprzgn4cykf6yknamw"; depends=[]; }; + DropletUtils = derive2 { name="DropletUtils"; version="1.20.0"; sha256="09xwfb4ihpsp465vb1zbcwm6ww6qi3spn9d8p4i1gczyc0p9pf1y"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR GenomicRanges HDF5Array IRanges Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; + DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.42.0"; sha256="0k3s9jryzc97jcm2gbz8d2qvn54dsf7mlf7qvx3nriqn3b99hyr7"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; + Dune = derive2 { name="Dune"; version="1.12.0"; sha256="07nsb41v3d5xh4imn1y5bmck8f630nvs94pgmm3izxd0bkcqclfy"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; }; + DynDoc = derive2 { name="DynDoc"; version="1.78.0"; sha256="16cb4pby6ja0xy8ygbgr6zfbyp4agyhlds5sayc5ryq50vafykah"; depends=[]; }; + EBImage = derive2 { name="EBImage"; version="4.42.0"; sha256="0z0ajmy1zx7mqcjm2ibyk2qg3cj00kl76padyksbdbmwdncxs8yb"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; + EBSEA = derive2 { name="EBSEA"; version="1.28.0"; sha256="1ydzihgrchssadld3zswgbhh75clc9g1zx9mzv6g6kfnv8yrfr75"; depends=[DESeq2 EmpiricalBrownsMethod]; }; + EBSeq = derive2 { name="EBSeq"; version="1.40.0"; sha256="0y23k607f61csj2ciaqnl8pzsjisqlcnnhlasv36446n8f3silx5"; depends=[blockmodeling gplots testthat]; }; + EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.34.0"; sha256="01rbpl44xr7ij68aq0jv6ygq7ilrnpqibwdp1fl6dpxsm1yxgzfb"; depends=[EBSeq]; }; + EBarrays = derive2 { name="EBarrays"; version="2.64.0"; sha256="1k50br4hpkrwv1lnn0wp1c7kj32vk0gg19aivmw5d6brjdd39c1f"; depends=[Biobase cluster lattice]; }; + EBcoexpress = derive2 { name="EBcoexpress"; version="1.44.0"; sha256="0407xr0rs7f5y6j10pbl9iwryaz128w1b41v8lg2a17m81wyf05q"; depends=[EBarrays mclust minqa]; }; + EDASeq = derive2 { name="EDASeq"; version="2.34.0"; sha256="0gf4k02b5qywrg5rpg6hs9gyzcdlpw36ndgz3ca19plicair4mih"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; + EDIRquery = derive2 { name="EDIRquery"; version="1.0.0"; sha256="1a50nm2315jrl0cjylivjg4q31qjfcmn3qyfs70b6xvbpcv2zf1b"; depends=[GenomicRanges InteractionSet readr tibble tictoc]; }; + EGAD = derive2 { name="EGAD"; version="1.28.0"; sha256="1q4dy9i3xgjg391bs9jhwdd4li91cz3wcqmz5ax11lhp5k8znm2q"; depends=[Biobase GEOquery gplots igraph impute limma MASS plyr RColorBrewer RCurl zoo]; }; + EGSEA = derive2 { name="EGSEA"; version="1.28.0"; sha256="008id8nmf5aa2vzh9is7v0fvgljgndz2b37dnnc4w4d16399bm0z"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; + ELMER = derive2 { name="ELMER"; version="2.24.1"; sha256="1dk0glasd5rrilbbdf7nql7yn8n8gp7cvhbbl51949v71qndxpn9"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; + EMDomics = derive2 { name="EMDomics"; version="2.30.0"; sha256="1kmv75qj51jjrbqm8ydwrskp1r11z3jmhiyb2vl7sh40dqv69hn3"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; + ENmix = derive2 { name="ENmix"; version="1.36.01"; sha256="0f5gml0l38vv3khc5q5jhy1922l373754ssl8iqgbzcywk44651g"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges matrixStats minfi preprocessCore quadprog RPMM S4Vectors SummarizedExperiment]; }; + ERSSA = derive2 { name="ERSSA"; version="1.18.0"; sha256="1gzd2g837g4iqmjc2vd9f0bg5va0prnam7nd1hvr0rdkg3l525fw"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; + EWCE = derive2 { name="EWCE"; version="1.8.2"; sha256="0di7qbw3yrry44fxcfnksxpf41pdl91xjrxc6cpajlmlyzgarp66"; depends=[BiocParallel data_table DelayedArray dplyr ewceData ggplot2 HGNChelper limma Matrix orthogene reshape2 RNOmni SingleCellExperiment stringr SummarizedExperiment]; }; + EasyCellType = derive2 { name="EasyCellType"; version="1.2.0"; sha256="1l68g7hlcfmszf9sg1nagkv00sgd80klgi25jizabj6c1mg0pm13"; depends=[AnnotationDbi clusterProfiler dplyr forcats ggplot2 magrittr org_Hs_eg_db org_Mm_eg_db rlang]; }; + EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.28.0"; sha256="05vavncfcqq8klgiwqpw7nm7s9q96ldj0xfss66jbxm9wbmmv14r"; depends=[]; }; + EnMCB = derive2 { name="EnMCB"; version="1.12.0"; sha256="0flivhd9w26221cx8w9iis61qxlnygd7cyz84p6wkmm9xnyi0rh1"; depends=[BiocFileCache boot e1071 ggplot2 glmnet igraph Matrix mboost rms survival survivalROC survivalsvm]; }; + EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.18.0"; sha256="1mcyhgdvfmkkh0rlhf51an7j1zi96lqdhifki2aqmlx0lqvg4qxq"; depends=[ggplot2 ggrepel]; }; + EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.30.0"; sha256="18p2vjcg76rrjzjl03zgm4yxrgllbd42hg8rvsdbfb0s7brzr7ya"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; + EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.30.1"; sha256="0s0ics1xxryzhxvil1j5akfxcmvj8kc2h9mqy2f38zfxdqdmqzfn"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; + EpiCompare = derive2 { name="EpiCompare"; version="1.4.0"; sha256="0sizvxf8ggg8vndwyvcyr49lfllqfssv57k1i1q33h2kbk2jghl6"; depends=[AnnotationHub BiocGenerics BRGenomics ChIPseeker data_table downloadthis genomation GenomeInfoDb GenomicRanges ggplot2 htmltools IRanges plotly reshape2 rmarkdown rtracklayer stringr]; }; + EpiDISH = derive2 { name="EpiDISH"; version="2.16.0"; sha256="00s8ijpamkjl1b8pzh6b4zy6rk3wr9w1kbgar9db9inma956q0wv"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; }; + EpiMix = derive2 { name="EpiMix"; version="1.1.2"; sha256="15a844n0sv9ybnm8xw7vsc7vif5ig6q4kj3b635dyxv2aiih1wsn"; depends=[AnnotationDbi AnnotationHub Biobase biomaRt data_table doParallel doSNOW downloader dplyr ELMER_data EpiMix_data ExperimentHub foreach GenomeInfoDb GenomicFeatures GenomicRanges GEOquery ggplot2 impute IRanges limma plyr progress R_matlab RColorBrewer RCurl rlang RPMM S4Vectors SummarizedExperiment tibble tidyr]; }; + EpiTxDb = derive2 { name="EpiTxDb"; version="1.12.0"; sha256="0qpaqf5cyh95d91hkd8gs85kx3sz0dywfp5cg3wp6psz5wian24y"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; }; + EventPointer = derive2 { name="EventPointer"; version="3.8.0"; sha256="16jdzy9dj1hk0azb9ma86s1qcwxf02xj1plf8cjgmrrvpg1z6ix8"; depends=[abind affxparser Biostrings BSgenome cobs doParallel fgsea foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq speedglm stringr SummarizedExperiment tximport]; }; + ExCluster = derive2 { name="ExCluster"; version="1.18.0"; sha256="0ji516fx1mai38jb685gj538wsyg2ivplsf731nlhqwpg4zzc0cs"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; + ExiMiR = derive2 { name="ExiMiR"; version="2.42.0"; sha256="17vdlgriwm6imkfnksgcjrg0gj8zygwnhlahxlrc1qnllcv78f6c"; depends=[affy affyio Biobase limma preprocessCore]; }; + ExperimentHub = derive2 { name="ExperimentHub"; version="2.8.0"; sha256="0n55p4n2aadxh182lxxms3bk4bpajamivvqj06v09q2n9xnhjs7k"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager rappdirs S4Vectors]; }; + ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.26.0"; sha256="13il34lhb0qzl40995g9pf15r7m0l9hm4di32pig8jlg93qcnqgs"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; + ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.10.0"; sha256="135c67l02m5nj7g72rwwwhdg4jdlqjxjj62rs4nvp1qla779amh7"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.12.0"; sha256="01lkshvlc7f9fd8gyzk9kymq6k3a4h00vpg1blm9b723rbj9jb2d"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; }; + ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.28.0"; sha256="1vr2lc06qqp33nx15kiw9pq1h6rqf09ngwgkmafxqk8lsiw5i44j"; depends=[Biobase BiocStyle httr jsonlite limma RCurl S4Vectors SummarizedExperiment XML xml2]; }; + FCBF = derive2 { name="FCBF"; version="2.8.0"; sha256="1clg3s2av70j0pm0yj0ckvlklkkg5zb0r057pz6wmklllfkmx1dv"; depends=[ggplot2 gridExtra mclust pbapply SummarizedExperiment]; }; + FEAST = derive2 { name="FEAST"; version="1.8.0"; sha256="1qgrir3zr1yp8hx9wxhyqyrvjx7qy9pjfb9h68m5zg5111ckrak4"; depends=[BiocParallel irlba matrixStats mclust SC3 SingleCellExperiment SummarizedExperiment TSCAN]; }; + FELLA = derive2 { name="FELLA"; version="1.20.0"; sha256="18qdlf1ajjaw0asyhs7spj06f3rxyci57h03s9ybr0zg2wa8l89j"; depends=[igraph KEGGREST Matrix plyr]; }; + FGNet = derive2 { name="FGNet"; version="3.34.0"; sha256="1l4ix8a5qy6dx8s3m877cnqsm0s4pn89v94p754iakcwygsjl9l4"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; + FISHalyseR = derive2 { name="FISHalyseR"; version="1.34.0"; sha256="0518nswsxp0fxirrb842gbb9yijlr4clngv09h6afaq3ba4d0grv"; depends=[abind EBImage]; }; + FLAMES = derive2 { name="FLAMES"; version="1.6.0"; sha256="13hk0igk99nkjbplr3lbgsm24jnrdhcfggqlr61x61dhasxqxiqi"; depends=[bambu basilisk BiocGenerics Biostrings circlize ComplexHeatmap cowplot dplyr DropletUtils GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gridExtra igraph jsonlite magrittr Matrix MultiAssayExperiment RColorBrewer Rcpp reticulate Rhtslib Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment stringr SummarizedExperiment tidyr withr zlibbioc]; }; + FRASER = derive2 { name="FRASER"; version="1.12.1"; sha256="04i63r5lnrvy0rw0i5k3399j2yv8x7sw4l4496kirp2vms7cwxya"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; + FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.36.0"; sha256="02y6bnjl5yh9gzbgypnh8miixgzrkywwi5af5llai833wqiq094i"; depends=[fda MASS]; }; + FScanR = derive2 { name="FScanR"; version="1.10.0"; sha256="1v4iq2wlvxf0wbs2d9ip3pcfx3a533pqp4as9pr0f6q57cvqi2bs"; depends=[]; }; + FamAgg = derive2 { name="FamAgg"; version="1.28.0"; sha256="1rf41iydh9d0x46y1v7324rmzkgyn5s80z74lby6935jgvjk43qv"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; + FastqCleaner = derive2 { name="FastqCleaner"; version="1.18.0"; sha256="0rn6f7ms4ashvghmnjwkif578rn4lr01dg3iv6jy1mg58i49pb58"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; + FeatSeekR = derive2 { name="FeatSeekR"; version="1.0.0"; sha256="0jg4xm78ga2dv7qg3gx4inkjiknkvwfzgkmmdnpmgmrzsvqs9i7c"; depends=[MASS pheatmap pracma SummarizedExperiment]; }; + FilterFFPE = derive2 { name="FilterFFPE"; version="1.10.0"; sha256="1d083g13xf4gra01y1kf5v4j10zs7j1iz47ci3nwjyzq2xa5jrkw"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; + FindIT2 = derive2 { name="FindIT2"; version="1.6.0"; sha256="0h3fnl5q5hivin4n42fkgknz8kiiqidblj2hlkbkm6p69pvjskfi"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; + FitHiC = derive2 { name="FitHiC"; version="1.26.0"; sha256="0mqrzh1rcwyqlhq9wxcy4gp47hsb70qrsissm9nj0cb9j6ihi407"; depends=[data_table fdrtool Rcpp]; }; + FlowSOM = derive2 { name="FlowSOM"; version="2.8.0"; sha256="13y0ny61skj14mfhjwpa5zmflzdqxy2vf6gd4m9358g4wxfbhkv0"; depends=[BiocGenerics colorRamps ConsensusClusterPlus dplyr flowCore ggforce ggnewscale ggplot2 ggpubr igraph magrittr rlang Rtsne tidyr XML]; }; + FoldGO = derive2 { name="FoldGO"; version="1.18.0"; sha256="0h08yv1kykllaanc562ncwv3ajic7cd4wcqba24nlbh6agsazwyk"; depends=[ggplot2 tidyr topGO]; }; + FunChIP = derive2 { name="FunChIP"; version="1.26.0"; sha256="0z8j1qhll4qi07jvq2b85n748mk0429p2miw46nkx6rrhfb8fzcd"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; + FuseSOM = derive2 { name="FuseSOM"; version="1.2.0"; sha256="111xx7lyfgrypvr0gy5dqm1lydj6gypscnrx38yn30l58qq9ywp8"; depends=[analogue cluster coop diptest fastcluster FCPS fpc ggplot2 ggplotify ggpubr pheatmap proxy psych Rcpp S4Vectors stringr SummarizedExperiment]; }; + GA4GHclient = derive2 { name="GA4GHclient"; version="1.24.0"; sha256="1mr4dzbk9y90i75xwyif3hf71mi1k86dn3jr66i1d9hqky9q807i"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; + GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.22.0"; sha256="05yhc7hhrikaq7amhc50mxsj69dsp8sfj277k3y6zj8y34wil6a9"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; + GARS = derive2 { name="GARS"; version="1.20.0"; sha256="1hr8gnj3qfizimfhkgnw8nrrz4axpmvdf567fdwa6pf5lxp2r7iy"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; + GAprediction = derive2 { name="GAprediction"; version="1.26.0"; sha256="1sr3dj6w6mcvypakcryw0zkdjkp1lzx4wjc9jrwq04cqclq8dyqd"; depends=[glmnet Matrix]; }; + GBScleanR = derive2 { name="GBScleanR"; version="1.4.4"; sha256="1z3acpy4cxw9q92bzfd5c8b4mnj6zg2akg575ygr5fzbxb0fk7rc"; depends=[expm gdsfmt ggplot2 Rcpp RcppParallel SeqArray tidyr]; }; + GCSscore = derive2 { name="GCSscore"; version="1.14.0"; sha256="0fqr0sgplpbkdpvwgi8fpmwmnqja41622pvkkzsalbzai021hgp3"; depends=[affxparser Biobase BiocManager data_table devtools dplR RSQLite stringr]; }; + GDCRNATools = derive2 { name="GDCRNATools"; version="1.20.0"; sha256="1fspvlj7x80prsvj0q53y5m05b584ajrivrxpr8ijnnqam4fy6nb"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; + GDSArray = derive2 { name="GDSArray"; version="1.20.0"; sha256="0p2mw6j04cr08yw1rnjsddb4fm24h973m7pr8rznzsjnki3r944w"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; + GEM = derive2 { name="GEM"; version="1.26.0"; sha256="1dr3d2jsbzk858wnbqgv2gy2qspx9sg49lmqvb8wl4m01jm3zbb4"; depends=[ggplot2]; }; + GENESIS = derive2 { name="GENESIS"; version="2.30.0"; sha256="0lbd8fqv3j1wkc17ah30ylfskj29cvb8d61xlja430kfkfky2n97"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; + GENIE3 = derive2 { name="GENIE3"; version="1.22.0"; sha256="1q4wi3k95c8vsyfx6359p2p29ascjg1cxmpp9bf99ixbjs71rd33"; depends=[dplyr reshape2]; }; + GEOexplorer = derive2 { name="GEOexplorer"; version="1.6.0"; sha256="1dh94sh3zypqkvgijmhi6jcsqnh5hha178vcmsk7xfbdrrqjcdva"; depends=[Biobase DT factoextra GEOquery ggplot2 heatmaply htmltools impute limma maptools pheatmap plotly scales shiny shinyBS shinybusy shinyHeatmaply stringr umap]; }; + GEOfastq = derive2 { name="GEOfastq"; version="1.8.0"; sha256="0nb8a83i0v7pjrximzqjfrcflxdhbv7y2gjz9bcy20yvcgzi6pn8"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; + GEOmetadb = derive2 { name="GEOmetadb"; version="1.62.0"; sha256="0xlm1yf2n2wi8sy6b4l7bnkb5dzgd2nfnpp2wrxncp163rrxi40q"; depends=[GEOquery RSQLite]; }; + GEOquery = derive2 { name="GEOquery"; version="2.68.0"; sha256="1xyrfj8b7j2wdjlbmwhx1c0hfbvr7l7jxyw2v64fbw8604zprv4s"; depends=[Biobase curl data_table dplyr limma magrittr R_utils readr tidyr xml2]; }; + GEOsubmission = derive2 { name="GEOsubmission"; version="1.52.0"; sha256="0paqcd10dgs25r4hpx273qsc6dpwy3n9il4xjxhg04k4dl02r6a9"; depends=[affy Biobase]; }; + GEWIST = derive2 { name="GEWIST"; version="1.44.0"; sha256="1cwv3sx2dv9flbjfrbjnzng8l3kf76x7jiljjcjs795j4lgjnprr"; depends=[car]; }; + GGPA = derive2 { name="GGPA"; version="1.12.1"; sha256="1gfq02jay0j8anz0n95y6d6dnkv2h0dx4mpjv6kbnqarw4pqb5cc"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; + GIGSEA = derive2 { name="GIGSEA"; version="1.18.0"; sha256="1gc2jf5kvl50f1xiqgbgbhgwck8drx1d3g5p2lhqbwgx58zx6xv3"; depends=[locfdr MASS Matrix]; }; + GISPA = derive2 { name="GISPA"; version="1.24.0"; sha256="0mm0nmjc05f21ya9mnf46qgld04w21k3c4xf48ppm7lrfa5blanz"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; + GLAD = derive2 { name="GLAD"; version="2.64.0"; sha256="0fi7wwn0ai4bwy8wgwl4dh3fbl6zhrkcy662dc1fcnk5i7rnv3y5"; depends=[aws]; }; + GMRP = derive2 { name="GMRP"; version="1.28.0"; sha256="0d0pknr29x33brvxbnxbs5niiybbjs7vcszggdimflsihjblqvjj"; depends=[diagram GenomicRanges plotrix]; }; + GNET2 = derive2 { name="GNET2"; version="1.16.0"; sha256="1rlba3gqn5yyd2glbcfb62dcqkfhvhk33z2maqlr8x7814qnadm3"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; }; + GOSemSim = derive2 { name="GOSemSim"; version="2.26.0"; sha256="1pg86z4vbrp59kpq7zpscnjw9cgfkdqjrdp9zjvdf3xghgjvwl9a"; depends=[AnnotationDbi GO_db Rcpp]; }; + GOSim = derive2 { name="GOSim"; version="1.38.0"; sha256="1i6fhgliiq7zxqv14mva1v6z0gibqqspdjaibhalxlm151aym6k1"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; + GOTHiC = derive2 { name="GOTHiC"; version="1.36.0"; sha256="13cvcrb9s2srr3nk3gslizy3ydd3wndis13cvhjy77hbbmp7ykc0"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; + GOexpress = derive2 { name="GOexpress"; version="1.34.0"; sha256="1x58xgv2dvxfb5kilxflaamq0dxbcb45q60f2zdd39ar0fw38026"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; + GOfuncR = derive2 { name="GOfuncR"; version="1.20.0"; sha256="05509xf768x8asqadjj5s50m0yqnklrxi28bmqd22cn6cbmahszw"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; + GOpro = derive2 { name="GOpro"; version="1.26.0"; sha256="1hcsxsqykdkxyj13g824j9gkrsf7fbknj81556a8f0f2pqnm52ws"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; + GOstats = derive2 { name="GOstats"; version="2.66.0"; sha256="1jjcjc1zp42l3gw36rr84al07ghih0cjx4p8gn8rlmv1jsz6kp1h"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; + GOsummaries = derive2 { name="GOsummaries"; version="2.36.0"; sha256="1czr3vc5y9v1nz1x0cdi308gwrrv1g015x14nkw60024sxd858r2"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; + GPA = derive2 { name="GPA"; version="1.12.0"; sha256="109vp1ngainvirq49p4w9azxjjj95f0b3f3wr766mx808cick9wl"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; }; + GRENITS = derive2 { name="GRENITS"; version="1.52.1"; sha256="1q0f8bbn0r86xysvbainqn42ff38v2v3cyk2wjizk69wvd6bbzxm"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; + GRaNIE = derive2 { name="GRaNIE"; version="1.4.0"; sha256="070nh22h397qybgb63v5xqh5c3a2ryv4j6yairf3zl4q913mhvfj"; depends=[biomaRt Biostrings checkmate circlize colorspace ComplexHeatmap data_table DESeq2 dplyr forcats futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph limma magrittr Matrix matrixStats patchwork progress RColorBrewer readr reshape2 rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect topGO viridis]; }; + GRmetrics = derive2 { name="GRmetrics"; version="1.26.0"; sha256="03xcv9s22s66iwpg73jzch85gsq6shjqb0mp89529yi0nrxflpgn"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; + GSALightning = derive2 { name="GSALightning"; version="1.28.0"; sha256="0k0vl3px0w32wkfd8mh9y85lmasn9knzmkr48pvjig27v8q23pc6"; depends=[data_table Matrix]; }; + GSAR = derive2 { name="GSAR"; version="1.34.0"; sha256="0xqzl1r0ikck8yyq2n173khc98jky6by52vnnsw8awqqvnm8rnm2"; depends=[igraph]; }; + GSCA = derive2 { name="GSCA"; version="2.30.0"; sha256="1kxbsxj12n4jq1i73ah72p4l5kj0slbh4qz1spxsvgn02gv7nr41"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; + GSEABase = derive2 { name="GSEABase"; version="1.62.0"; sha256="0xfcgvsglcwkwsb1azmp4n4hx95fxnjk7rlwggb1f5rjw440qjnh"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; + GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.20.0"; sha256="0rinwmh1ip9awjggydrjwh7gg29bnwqrx9nmhsshdl173fkq36l5"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO S4Vectors SummarizedExperiment]; }; + GSEAlm = derive2 { name="GSEAlm"; version="1.60.0"; sha256="0ifh3lwmnciw5wwa7mbilrawcqkbzvylhvid5dnc14vmbagrcal3"; depends=[Biobase]; }; + GSEAmining = derive2 { name="GSEAmining"; version="1.10.0"; sha256="1xbd6z2z6gryd90x8b1yk3xdh7fvhhg0axmfrr7w09274akg9cd8"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra rlang stringr tibble tidytext]; }; + GSRI = derive2 { name="GSRI"; version="2.48.0"; sha256="07ad5fc72rjylfm4j547nj2m3vjl7hdan7bcb3a728s6n1i2xriq"; depends=[Biobase fdrtool genefilter GSEABase les]; }; + GSReg = derive2 { name="GSReg"; version="1.34.0"; sha256="08rlgc9r9zjrc3kzvmrka340hbpfbbz708zrjfh4sda4zwca8dmb"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; + GSVA = derive2 { name="GSVA"; version="1.48.0"; sha256="09gvl74yd9vwl5hs6bm1psgrg2x3mvjwdail9byz0pa8c10a8ky3"; depends=[Biobase BiocParallel BiocSingular DelayedArray DelayedMatrixStats GSEABase HDF5Array IRanges Matrix S4Vectors SingleCellExperiment sparseMatrixStats SummarizedExperiment]; }; + GSgalgoR = derive2 { name="GSgalgoR"; version="1.10.0"; sha256="0aza5pmsvk0vwb8azp4n2yjnhv1wbzp947g6mhh4g4dbd0dkkpsh"; depends=[cluster doParallel foreach matchingR nsga2R proxy survival]; }; + GUIDEseq = derive2 { name="GUIDEseq"; version="1.30.0"; sha256="1jcq7b69i2y03qwimjmj7wr24ji4m194abspgsvnl73hw0jxiamn"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 hash IRanges limma matrixStats multtest openxlsx patchwork purrr rio rlang Rsamtools S4Vectors stringr tidyr]; }; + GWAS_BAYES = derive2 { name="GWAS.BAYES"; version="1.10.0"; sha256="18xgrnjcxv8gvl38qhf2nry85lk6rwd4dc1zixh57nw4vc1mh4r2"; depends=[caret GA limma MASS Matrix memoise]; }; + GWASTools = derive2 { name="GWASTools"; version="1.46.0"; sha256="1g86xg2d9wi6xijhc89zxhbw190aviw9nkwvbwgz85jf71wf34hv"; depends=[Biobase data_table DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; + GWENA = derive2 { name="GWENA"; version="1.10.0"; sha256="11hnvriwib12rn4vfzd7ggiknngrqcxkvhsb0r4bz80cwayinrxm"; depends=[cluster dplyr dynamicTreeCut ggplot2 gprofiler2 igraph magrittr matrixStats NetRep purrr RColorBrewer rlist stringr SummarizedExperiment tibble tidyr WGCNA]; }; + GateFinder = derive2 { name="GateFinder"; version="1.20.0"; sha256="09c752vk08gn1qbdv7759mafqlpvg07qk933sqvfhhcr7vf3rr58"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; + GenProSeq = derive2 { name="GenProSeq"; version="1.4.2"; sha256="1cmxs7l98zcg8037qljlq3mx5ijjhsqvc1wn050bs39cmlaj02jw"; depends=[CatEncoders DeepPINCS keras mclust reticulate tensorflow ttgsea word2vec]; }; + GenVisR = derive2 { name="GenVisR"; version="1.31.1"; sha256="0507hmgv3gl8rl7hnha387yjsmhv9hfysvm4s9whqpqsgm5d4iqp"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; + GeneBreak = derive2 { name="GeneBreak"; version="1.30.0"; sha256="031i2z57hra21c52k4awdkzn6hg1dr31mb6360vq2br37nc07n04"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; + GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.46.0"; sha256="0lhrjzv26dffxmkixj5jn39rrxxvcjiams199qm56l30qsicx8xv"; depends=[Biobase]; }; + GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.26.0"; sha256="1rpvan7m0lf9q5aix3di65hvdjkrssl3azs9ws5iiszsdmghs0fm"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; }; + GeneMeta = derive2 { name="GeneMeta"; version="1.72.0"; sha256="07sj05wk8fbq0kdwvgm7rahp8mwri08cmlz2xcl44n85szv2mpji"; depends=[Biobase genefilter]; }; + GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.42.0"; sha256="0v6v6ij4cjbf1w0dvkfkw9qh0nsydd51rqmzaxcl0spry6r5z5zn"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; + GeneOverlap = derive2 { name="GeneOverlap"; version="1.36.0"; sha256="1bimsayaf68j15im591r6rbvydhbmiqcp1pphd5zzg6hzp6va927"; depends=[gplots RColorBrewer]; }; + GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.56.0"; sha256="1z5qs7v9s6r72kmbkkv2krw89hnxg6lr0751jgyhkh2kwdh6k7va"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; + GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.44.1"; sha256="0cx48dqdsry0a099f9s5yx1frbfnqsz9vrvdg2r8ika1inngzs8y"; depends=[Biobase limma MASS]; }; + GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.20.0"; sha256="04pln8ix4cmca3bq460b3rk57bj68rm3817mgpyh8l9425v6s0j6"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; + GeneTonic = derive2 { name="GeneTonic"; version="2.4.0"; sha256="0vk67mdn66gx5mz1i433aija0zbjqsw5am9xbbzkw3wi670bnc98"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap ComplexUpset dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel ggridges GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; }; + GeneticsPed = derive2 { name="GeneticsPed"; version="1.62.1"; sha256="0620gg0hyz06n0843f72xy28a15h7dgx3s4mxj9x647ic82v4cm0"; depends=[gdata genetics MASS]; }; + GenomAutomorphism = derive2 { name="GenomAutomorphism"; version="1.2.0"; sha256="0idffiapx9ycdaj5hpf50x5xhpgwb2a5gbfajmfrgw5g467qsqvp"; depends=[BiocGenerics BiocParallel Biostrings data_table doParallel dplyr foreach GenomeInfoDb GenomicRanges IRanges numbers S4Vectors]; }; + GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.36.0"; sha256="072dawysgcfyhnwva38y5vf95y3b9dhpad66mwma07hrh27a6wqh"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; + GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.36.0"; sha256="1irzcz9s97gqbyj9j71wxv2ikdfd8g14296fg33w2ykfdm80nzf0"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; + GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.24.2"; sha256="0dgvhi6nbc1qvrdwww2r39gxd2xmbadvy03lxh5nny9pyhhdlz3l"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang tibble xml2]; }; + GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.8.0"; sha256="1bxq7mqy8s9dcj1wsjzbrszvi1cfphvjbmxvb1pk1mxxa03zipjs"; depends=[Biostrings broom data_table dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges plyr reshape2 scales]; }; + GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.52.0"; sha256="0sccj6py15g5ihdrpzwn7j71wkqwljay8p2yn2wkd8142cfsr7x3"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; + GenomicFiles = derive2 { name="GenomicFiles"; version="1.36.0"; sha256="0nxz8lvpmyllgs1ksgbha8qqs4fhppkg5casppnas9x47dj4bxph"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + GenomicInteractionNodes = derive2 { name="GenomicInteractionNodes"; version="1.4.0"; sha256="1wjlmydi74rsiqxg1pwz3f9zdc28p4xp4fa1lbjfskkd6b36d5p5"; depends=[AnnotationDbi GenomeInfoDb GenomicFeatures GenomicRanges GO_db graph IRanges RBGL S4Vectors]; }; + GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.34.0"; sha256="0qhb2mm5nynnw0cj5da0i6hb1bz7cyns0gp7xy0wscmfyh2wahbv"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; + GenomicOZone = derive2 { name="GenomicOZone"; version="1.14.0"; sha256="0k4f22qnpwg227kxp68p93nx7q4gkkxd4d4z3dr104svgfidgq8k"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; + GenomicRanges = derive2 { name="GenomicRanges"; version="1.52.0"; sha256="0vbr8nqn4pk0w3wx94q4f44psy6lxgx4b7p8hp0vf46flwggj2lj"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; + GenomicScores = derive2 { name="GenomicScores"; version="2.12.0"; sha256="1z8h9sbr6xqwbsfisr33qdxg0xdrw8r4vvxl1pf4x8vv08zw0vx6"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array httr IRanges rhdf5 S4Vectors XML]; }; + GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.8.0"; sha256="1wajx2r8dcscdgpz2dd1bdhpln258gpqs4bd4plq1ygjhnr2zbw4"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr irlba plotly S4Vectors SummarizedExperiment]; }; + GenomicTuples = derive2 { name="GenomicTuples"; version="1.34.0"; sha256="0yf64fjd0d8gspbdksv23j3ry4lab52j7kh7nizv944i387p2q13"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + GeoDiff = derive2 { name="GeoDiff"; version="1.6.0"; sha256="15d393xqc315wv98l08yfvxv866ciqccvqqx7zj0z8p2v2p5md18"; depends=[Biobase GeomxTools lme4 Matrix NanoStringNCTools plyr Rcpp RcppArmadillo robust roptim testthat withr]; }; + GeoTcgaData = derive2 { name="GeoTcgaData"; version="2.0.0"; sha256="0fbg9m7w3l6p88ay9h33h7z22y55kxf4k4g55l0gqqcybi164h1i"; depends=[cqn data_table plyr SummarizedExperiment topconfects]; }; + GeomxTools = derive2 { name="GeomxTools"; version="3.4.0"; sha256="0s36gn3ix98qbvxkpplljkw89sblxb49y8p8z7csnp0xdwp5bkkx"; depends=[Biobase BiocGenerics data_table dplyr EnvStats GGally ggplot2 lmerTest NanoStringNCTools readxl reshape2 rjson rlang S4Vectors SeuratObject stringr]; }; + GladiaTOX = derive2 { name="GladiaTOX"; version="1.16.0"; sha256="0bd8bsqycqzbapcj5pcilwf92wb01n7msd3wddsds0iyz97myw3c"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMySQL RSQLite stringr tidyr XML xtable]; }; + Glimma = derive2 { name="Glimma"; version="2.10.0"; sha256="0171wizl516chzzwnbc2z2bf5sk4a491fcs4yhq5ycqaqpjmbg35"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; }; + GlobalAncova = derive2 { name="GlobalAncova"; version="4.18.0"; sha256="1fld18rmi6rqm2nr549a4740w1iq3mf5df67v9ba6h42r4abs1ar"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; + GmicR = derive2 { name="GmicR"; version="1.14.0"; sha256="1q10gs10br8w06hvb2wiqz5sfn4zwmcvbiqb6i0p7gxbr63s4ka2"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; + GraphAT = derive2 { name="GraphAT"; version="1.72.0"; sha256="0ibrlwf528687s5kk0hq72j9h8p5p18hrdx3823nr1s70vhysb3m"; depends=[graph MCMCpack]; }; + GraphAlignment = derive2 { name="GraphAlignment"; version="1.64.0"; sha256="1zvmxrwbg72mjdr337azi2lbyaan7syndxqdz8xwas07jglgpycz"; depends=[]; }; + GraphPAC = derive2 { name="GraphPAC"; version="1.42.0"; sha256="0rs71m850qsc9ickxkqlmcrwqsr66z7ji4mqgcg8kii0yjflpkvb"; depends=[igraph iPAC RMallow TSP]; }; + GreyListChIP = derive2 { name="GreyListChIP"; version="1.32.0"; sha256="1sfpf9msnzyrc8b0xzc2406bq2gkcwrrhv7fa9ynqv2ip6xwsc8s"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; + Guitar = derive2 { name="Guitar"; version="2.16.0"; sha256="1v1yw90waq0ccj6pxdipipy5bnk0k762m5kadl4h3jgpcrkf2fvc"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; + Gviz = derive2 { name="Gviz"; version="1.44.0"; sha256="1lp345hxlddsc91lxrzay073g2dabc8h1cynyh87y85vzffhwplw"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; + HDF5Array = derive2 { name="HDF5Array"; version="1.28.1"; sha256="1riwxxnbi4z0lf42psh3m3ivxlgmmlnqhgsih6911c754r6s39qg"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Arrays S4Vectors]; }; + HDTD = derive2 { name="HDTD"; version="1.34.1"; sha256="0gyav2g5c7gphqxbj6mr96g06nr1n5jrn8dkidr8l4ripv5ycx59"; depends=[Rcpp RcppArmadillo]; }; + HELP = derive2 { name="HELP"; version="1.58.0"; sha256="1bhyjk2cmyw2s51s474ccykjrja3m3gv6jzdmv7a4zkcfa7fa7wg"; depends=[Biobase]; }; + HEM = derive2 { name="HEM"; version="1.72.0"; sha256="0b5pc1ybml1wk406s1b4pbarcayc9nyf0cvqvr28g7rr8q88kgsq"; depends=[Biobase]; }; + HGC = derive2 { name="HGC"; version="1.8.0"; sha256="1kjhiw6g3an2yvb709idwkhwq8lw27r7d4g2kb5l5b77b0rr81hz"; depends=[ape dendextend dplyr ggplot2 Matrix mclust patchwork RANN Rcpp RcppEigen]; }; + HIBAG = derive2 { name="HIBAG"; version="1.36.0"; sha256="1z52ikk96cpwg6hxvan8qjbb3bjc2jnn5kig228z38zzxyigndz0"; depends=[RcppParallel]; }; + HIPPO = derive2 { name="HIPPO"; version="1.12.0"; sha256="0lhs56r6wlg586xl18wxzhg8q8mhcm7qd7rjgx4hk50xa9c16cxz"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; + HIREewas = derive2 { name="HIREewas"; version="1.18.0"; sha256="0p0mcb5n6y4zw0df2a5irzwg3wmdk8vgp2hvrjr9vswbma8jxxfa"; depends=[gplots quadprog]; }; + HMMcopy = derive2 { name="HMMcopy"; version="1.42.0"; sha256="0vvg7jy38q43v9nvp18h6lhjkkcqgrgzgnhkb1v1fm03g5kg3fi6"; depends=[data_table]; }; + HPAStainR = derive2 { name="HPAStainR"; version="1.9.0"; sha256="1bjysi3x8248f262v4rzi2y50rlzryb987wbvdjy6af84nq7hd09"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; }; + HPAanalyze = derive2 { name="HPAanalyze"; version="1.18.0"; sha256="0cydl46li81hrbpgkb4vhx1asbcpbj1zsmkrbzqqny7z6yljwdnm"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; + HPiP = derive2 { name="HPiP"; version="1.6.0"; sha256="0097szmazcpmrs4q2i5rb2d2q3b4lkhskfdzj4mb8hwmh0znrvca"; depends=[caret corrplot dplyr ggplot2 httr igraph magrittr MCL pROC protr PRROC purrr readr stringr tibble tidyr]; }; + HTSFilter = derive2 { name="HTSFilter"; version="1.40.0"; sha256="0415shkdi4sp4glnjn4s2vjzi528bsbci3f0waj245v7kjsddws8"; depends=[Biobase BiocParallel DESeq2 edgeR]; }; + HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.30.0"; sha256="02v2ihwpnp16r022hsnr98g797h4cjc29a5c2d45vqpxbyil4qaf"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; + HTqPCR = derive2 { name="HTqPCR"; version="1.54.0"; sha256="12p0jb9bpz4x612vwj77d6l5h8rihfkzmhp8qy1gvv2zmn2a54jf"; depends=[affy Biobase gplots limma RColorBrewer]; }; + Harman = derive2 { name="Harman"; version="1.28.0"; sha256="138w2k7kljgsk68k5jv6fhgm7jfi10mgk8zby51g41908siqdlcl"; depends=[Ckmeans_1d_dp matrixStats Rcpp]; }; + Harshlight = derive2 { name="Harshlight"; version="1.72.0"; sha256="1rg3gx42a68jqbdmbqx7lh97y0rird1lci7146hnxa4svj827d5p"; depends=[affy altcdfenvs Biobase]; }; + Heatplus = derive2 { name="Heatplus"; version="3.8.0"; sha256="031f25w960jp5nhd78v3iv6pib266cpbawhi9rrd7csw89vnswfx"; depends=[RColorBrewer]; }; + HelloRanges = derive2 { name="HelloRanges"; version="1.26.0"; sha256="1qs8p6wblwwxkxg162lxjgpybvh659w30fy7y7y9kh0vvm3846z6"; depends=[BiocGenerics BiocIO Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + Herper = derive2 { name="Herper"; version="1.10.0"; sha256="0prk0g3br3xy6wv072gb66zkxspdyfya0711m7fxy00w4hk5jafd"; depends=[reticulate rjson withr]; }; + HiCBricks = derive2 { name="HiCBricks"; version="1.18.0"; sha256="0w8br6cmzxkpxda7sgz03rjh4lzy19fs4ghnhr2ac0dcz18vvjy2"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; }; + HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.8.0"; sha256="0s8wjq3q6bbyk7xd57v0cdkjrcicm59lnsj11q21pj8z1dpzpfh3"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; }; + HiCDOC = derive2 { name="HiCDOC"; version="1.2.0"; sha256="0cyqpvavv2gjw9w63njnw58mch1x7wjhcz9mrz2bbl3rdpic65v1"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicRanges ggExtra ggplot2 ggpubr gridExtra gtools InteractionSet multiHiCcompare pbapply Rcpp rhdf5 S4Vectors SummarizedExperiment zlibbioc]; }; + HiCExperiment = derive2 { name="HiCExperiment"; version="1.0.0"; sha256="1j8p4x8mzxjwirgx9jlqq3vkb7sadmx8w427k8byny0whzndds1r"; depends=[BiocGenerics BiocIO BiocParallel dplyr GenomeInfoDb GenomicRanges InteractionSet IRanges Matrix rhdf5 S4Vectors strawr vroom]; }; + HiCcompare = derive2 { name="HiCcompare"; version="1.22.0"; sha256="05f02jqrysi5zlvxnj4qv77kkv4jf23x00yinlj00k83vs8dgnck"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq rhdf5 S4Vectors]; }; + HiContacts = derive2 { name="HiContacts"; version="1.2.0"; sha256="1ir8mympyflg5q6wkdp1hps5sbqby7dgbvg20sv06rzr3l9d6h75"; depends=[BiocGenerics BiocIO BiocParallel dplyr GenomeInfoDb GenomicRanges ggplot2 ggrastr HiCExperiment InteractionSet IRanges Matrix readr RSpectra S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; + HiCool = derive2 { name="HiCool"; version="1.0.0"; sha256="10r2ppibb5w6h0abyjdlwasd589jr8gmrf6d5xh86sjmfaf5jkfl"; depends=[basilisk BiocIO dplyr GenomicRanges HiCExperiment InteractionSet IRanges plotly reticulate rmarkdown rmdformats S4Vectors sessioninfo stringr vroom]; }; + HiLDA = derive2 { name="HiLDA"; version="1.14.0"; sha256="0igpp4l7dad92a73l8ih17fwi4j9abxlb2q335a4wz40lgzqkz6j"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; + HiTC = derive2 { name="HiTC"; version="1.44.0"; sha256="00csfr3yhbllwc8797xg49qb0djpvbpfi6mbnps284nlqy5vpdwh"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; + HilbertCurve = derive2 { name="HilbertCurve"; version="1.30.0"; sha256="160n5lrghqhsm69qhgbhi1g018i6f7wqr1rp9mlvy4mqndzygdnp"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; + HilbertVis = derive2 { name="HilbertVis"; version="1.58.0"; sha256="12gzfnkkxhw9nyha70ghh8vqp7283grif0aahw3413xzppb2v3bh"; depends=[lattice]; }; + HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.58.0"; sha256="166vk1pysxldkqwpi76x5vppw09d75kdqclkizpnx149wf5lxx2f"; depends=[HilbertVis]; }; + HubPub = derive2 { name="HubPub"; version="1.8.0"; sha256="0v2ipm2351z7829rg3icfgci3g8jrjmh94j6d5njfskpl71aihh5"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; + HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.16.0"; sha256="11pfnpjga1rxs7mjc2jk72si8z2vgk0yhc0hiy4cvfiw653pwzzg"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; }; + HybridMTest = derive2 { name="HybridMTest"; version="1.44.0"; sha256="19pycad35hc7ylnsz75bv029y1r6j9xvrbhzk4i64i7jn8gi7ngh"; depends=[Biobase fdrtool MASS survival]; }; + IFAA = derive2 { name="IFAA"; version="1.2.0"; sha256="1bvx78akdyr4wcghjq2j035bzir6aas6wydmmbpv72whpcvpqpdk"; depends=[DescTools doParallel doRNG foreach glmnet HDCI mathjaxr Matrix MatrixExtra parallelly S4Vectors stringr SummarizedExperiment]; }; + IHW = derive2 { name="IHW"; version="1.28.0"; sha256="0i4yahgkrg9rnc0xldm026k6bd1bn5nkgkaf6kpyyday41rxzyq8"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; + ILoReg = derive2 { name="ILoReg"; version="1.10.0"; sha256="10j148p28mnvgqdvsi6mwx37j25hb4hgh0206jfq8pfwd1arz8ai"; depends=[aricode cluster cowplot dendextend DescTools doRNG doSNOW dplyr fastcluster foreach ggplot2 LiblineaR Matrix parallelDist pheatmap plyr reshape2 RSpectra Rtsne S4Vectors scales SingleCellExperiment SparseM SummarizedExperiment umap]; }; + IMAS = derive2 { name="IMAS"; version="1.24.0"; sha256="0iy4jqnvcngc516gj7890df8vnk0ydcphx2qhafa2s1lgisa1yb4"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; + IMMAN = derive2 { name="IMMAN"; version="1.20.0"; sha256="01pz23ppy8bs20hzf819lmyy7g354n87rl0b3hasr8lvavvhfvd6"; depends=[Biostrings igraph seqinr STRINGdb]; }; + IMPCdata = derive2 { name="IMPCdata"; version="1.36.0"; sha256="1zv0b83rmdmzbbv43c87f9mpjgk94fr95zsnpvxx20pg9b5bgh2k"; depends=[rjson]; }; + INDEED = derive2 { name="INDEED"; version="2.14.0"; sha256="1ffmmgi3lw7xqzzqsml85jpl9gr91s96s8n3c4d96c3b8d80lrcp"; depends=[devtools glasso igraph visNetwork]; }; + INPower = derive2 { name="INPower"; version="1.36.0"; sha256="0d1ajnhc9hcvdsnd2v9mnnbfh9c8xpyn5z52yzcjgmk4wsp514nc"; depends=[mvtnorm]; }; + INSPEcT = derive2 { name="INSPEcT"; version="1.30.0"; sha256="1nyfl78fjj956bk1xf32k3jdqhlffx6grbl7vajn48q5ldsx8kcx"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve gdata GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + INTACT = derive2 { name="INTACT"; version="1.0.1"; sha256="0dsv3h4njqrknbf9a70h1iaap3zrjmbrcfyj0gz4a0n0x99d4kyx"; depends=[bdsmatrix numDeriv SQUAREM]; }; + IONiseR = derive2 { name="IONiseR"; version="2.24.0"; sha256="1yrsd5n9zam6wslc6savfn122v3wzzcc46w20mb849qq2np4frf0"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; + IPO = derive2 { name="IPO"; version="1.26.0"; sha256="0sqr2yzm39arfjc4vgv5w1hqc952920gir24dxl9cz3xjblqxbk6"; depends=[BiocParallel CAMERA rsm xcms]; }; + IRISFGM = derive2 { name="IRISFGM"; version="1.8.0"; sha256="1n13rsbg5y0xnr6in18silifx8jhqzjj1vb5kpjgy5ml55im1s5r"; depends=[AdaptGauss AnnotationDbi anocva clusterProfiler colorspace DEsingle DrImpute ggplot2 ggpubr ggraph igraph knitr Matrix MCL mixtools org_Hs_eg_db org_Mm_eg_db pheatmap Polychrome RColorBrewer Rcpp scater scran Seurat SingleCellExperiment]; }; + IRanges = derive2 { name="IRanges"; version="2.34.0"; sha256="13kmh5zik3gw4jzh666zd3vmv915fcac5lx76s9q38x01m4gd7ld"; depends=[BiocGenerics S4Vectors]; }; + ISAnalytics = derive2 { name="ISAnalytics"; version="1.10.1"; sha256="014sflrwisym4snfsm1bsdzfhlk17k2ckm72gj3i8ppsisdmdcw9"; depends=[bslib datamods dplyr DT forcats fs ggplot2 ggrepel glue lifecycle lubridate purrr readr readxl rlang shiny shinyWidgets stringr tibble tidyr]; }; + ISLET = derive2 { name="ISLET"; version="1.2.0"; sha256="18xqib6i0ys59g68lfm5h83iihhhj335pwdnm42q9wl5r81jfbij"; depends=[BiocGenerics BiocParallel Matrix SummarizedExperiment]; }; + ISoLDE = derive2 { name="ISoLDE"; version="1.28.0"; sha256="1wzgffsxmicqc6dd1a3j2r2r0qgrjl9m34lw3anhks61r6ipfl0s"; depends=[]; }; + ITALICS = derive2 { name="ITALICS"; version="2.60.0"; sha256="09yia158mrv9r32iw88jlbfd6l7hzmglv8ni7i28x18qvnhp2a08"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; + IVAS = derive2 { name="IVAS"; version="2.20.0"; sha256="1znbvbk3svpawjhxiy0ib6hg8kzm838nh7j70ddzwx5zaav50swy"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; + IWTomics = derive2 { name="IWTomics"; version="1.24.0"; sha256="0wdai6j9j8vkd5nj71x1g3d2nqzs5xbap8z1qq5diq1sl9q7dvdf"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; + Icens = derive2 { name="Icens"; version="1.72.0"; sha256="1aq4iwk1cp96jzldhx7d4q7i77zbdg8nzkzh12g29yhwzj39nl3q"; depends=[survival]; }; + IdeoViz = derive2 { name="IdeoViz"; version="1.36.0"; sha256="1za1cxf734mar9hbvqrijdg61g0jag9jdzmi8p8ka62xbikxqa3s"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; + IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.14.0"; sha256="0z3ik9fqjs6nqk58dbm70ksakcg321l8xmyf44qhchs7ciqip0lw"; depends=[BH Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders SummarizedExperiment]; }; + ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.28.0"; sha256="0l4l55yrw21z4r6sczib63amd2ai1x34hyhvf7wqpr4m4j4r4zwa"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; }; + InPAS = derive2 { name="InPAS"; version="2.8.0"; sha256="1i0d49yvm2cq28mjrqy370bk9kd421x40iyz20ghmkjvr8h8fdlq"; depends=[AnnotationDbi batchtools Biobase Biostrings BSgenome cleanUpdTSeq depmixS4 dplyr flock future future_apply GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma magrittr parallelly plyranges preprocessCore readr reshape2 RSQLite S4Vectors]; }; + InTAD = derive2 { name="InTAD"; version="1.20.0"; sha256="0ghn58f6xzad12ap1k2l9l2f9y30rv6svg51fy9kjsl53bvfighg"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; + Informeasure = derive2 { name="Informeasure"; version="1.10.0"; sha256="08pyh4b5xiib1z91nj50ybrybyidkpv1lsp8lzf2vic4pm5g8zs6"; depends=[entropy]; }; + IntEREst = derive2 { name="IntEREst"; version="1.24.0"; sha256="1f67i9q92qn61f0w0cz8ilq7n6xjnk4rspnr916zk7k04rgdz0s9"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; + IntOMICS = derive2 { name="IntOMICS"; version="1.0.0"; sha256="107xvvs79fmm6d45gydnd7c3nlzw99sry9h6c6al0wb0b2h1219p"; depends=[bestNormalize bnlearn bnstruct cowplot ggplot2 ggraph gplots igraph matrixStats numbers RColorBrewer rlang SummarizedExperiment]; }; + InterCellar = derive2 { name="InterCellar"; version="2.6.0"; sha256="1m2vjdzqc1xjvcaa1khlhsrsdiz6nlvwmwvby6dh7jp8p8cz37b8"; depends=[biomaRt circlize colorspace colourpicker ComplexHeatmap config data_table dendextend dplyr DT factoextra fmsb fs ggplot2 golem htmltools htmlwidgets igraph plotly plyr readxl rlang scales shiny shinyalert shinycssloaders shinydashboard shinyFeedback shinyFiles signal tibble tidyr umap visNetwork wordcloud2]; }; + InterMineR = derive2 { name="InterMineR"; version="1.22.0"; sha256="0x6lqzczsh2rj9ymbr94b5ik82vj99xhq4x1jjhs2l84i5bzkxi4"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; + InteractionSet = derive2 { name="InteractionSet"; version="1.28.0"; sha256="15bvjhwh7v4ldg5q52h1y5ks75qw85zynnybcaccypws3zlwvacn"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; + InteractiveComplexHeatmap = derive2 { name="InteractiveComplexHeatmap"; version="1.8.0"; sha256="13qyzfkcjnarbjwr8v74w3a5nzrfnk46w58sa0rmjbydkjy9ry65"; depends=[clisymbols ComplexHeatmap digest fontawesome GetoptLong htmltools IRanges jsonlite kableExtra RColorBrewer S4Vectors shiny svglite]; }; + IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.22.0"; sha256="0gw246klhnvnpzvyzjvcgki5k3mbcqagw5qfpk3139ldyi5jdc6q"; depends=[FGNet igraph knitr]; }; + IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.18.0"; sha256="163jwm2x8b1kwhm03vi1xbpkqgsr0llyqzvv8nq48cjza14wxnz0"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; + IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.16.0"; sha256="1c7dbxb748kkq8llijrikc403f0y6x6r5ma62067k48lbmal3cw1"; depends=[IsoCorrectoR readxl tcltk2]; }; + IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.21.0"; sha256="1vzzsqjnkaffyxgvw6bsbxhgg1102cap2hsmzkhwzh6bvh02bwkx"; depends=[Biobase BiocGenerics Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer RCurl readr reshape2 rtracklayer stringr tibble tximeta tximport VennDiagram XVector]; }; + KBoost = derive2 { name="KBoost"; version="1.8.0"; sha256="1gisi1s2q1qjr8lfbkpa717s8x8idssdv12nic5h2r82v1pdhmzd"; depends=[]; }; + KCsmart = derive2 { name="KCsmart"; version="2.58.0"; sha256="0sv7q7fx7wwin1hcba4izb75vrc2n02ig0rq17zdb8x8z14wbndb"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; + KEGGREST = derive2 { name="KEGGREST"; version="1.40.0"; sha256="1zmsk5w8i3cq0983nx1d24a6awrbq7aj2wrapsnizq9gvrsrhbbb"; depends=[Biostrings httr png]; }; + KEGGgraph = derive2 { name="KEGGgraph"; version="1.60.0"; sha256="0bgigkmnz5zvsygcifk2fc7i8rahmqr4brk65qa3104clqqvdfkl"; depends=[graph RCurl Rgraphviz XML]; }; + KEGGlincs = derive2 { name="KEGGlincs"; version="1.26.0"; sha256="0s8d2sw54k4m5s1yi7mijbc3hh7wayi5npgh8z7xiqj49mzali01"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; + KinSwingR = derive2 { name="KinSwingR"; version="1.18.0"; sha256="0ibwcdx2h6y80fhf5ln7rw6b9gfcpkr09vdypcnlfvz4nzr3x9k8"; depends=[BiocParallel data_table sqldf]; }; + KnowSeq = derive2 { name="KnowSeq"; version="1.14.0"; sha256="1a7g2dphfxqlc499jiknmpz3nvwjrj4kqfycc7y3iqrsx3isbhya"; depends=[caret cqn e1071 edgeR ggplot2 gridExtra Hmisc httr jsonlite kernlab limma praznik R_utils randomForest reshape2 rlist rmarkdown stringr sva XML]; }; + LACE = derive2 { name="LACE"; version="2.4.0"; sha256="0n8x3wsvrap311qpm8zznxnzvhdm9wfbgrahv8ip56sb1bv90p0g"; depends=[biomaRt bsplus callr configr curl data_table data_tree doParallel dplyr DT forcats foreach fs ggplot2 htmltools htmlwidgets igraph jsonlite logr Matrix purrr RColorBrewer readr Rfast shiny shinyBS shinydashboard shinyFiles shinyjs shinythemes shinyvalidate sortable stringi stringr SummarizedExperiment svglite tidyr]; }; + LBE = derive2 { name="LBE"; version="1.68.0"; sha256="1lch5irq51pvcxkj9jy71gwvhhhm5s1k3rr3p7v4vjd78wpjlrxb"; depends=[]; }; + LEA = derive2 { name="LEA"; version="3.12.2"; sha256="1kxrrl8pxhaipmzsw8gs4gs8g8xbp8169z9f7bcpgrfapnawafm9"; depends=[]; }; + LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.26.0"; sha256="1r5ah77qaf0pbdc2w5c3iyrn7k9b3kbp22aqdvmi7dmrr4nbhv3d"; depends=[CAMERA xcms]; }; + LOLA = derive2 { name="LOLA"; version="1.30.0"; sha256="1dq1xq6600smdv8g6kird70x5f7gilqa8rfky5dd6pja4znyfwij"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; + LPE = derive2 { name="LPE"; version="1.74.0"; sha256="0rsncp1sjv36248f720jj96kdd9k4xxvgnkkvw3h21k7cqnjbd2w"; depends=[]; }; + LPEadj = derive2 { name="LPEadj"; version="1.60.0"; sha256="1gfnpwvlmdqikng4dr10d8xkaamnvin3ry7kmal8q85dmz3j66dn"; depends=[LPE]; }; + LRBaseDbi = derive2 { name="LRBaseDbi"; version="2.10.0"; sha256="1f0mx2cdwbna8m5m1aaid92wmw6c1dapyq8f58rzy1xknyshh0sa"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; + LRcell = derive2 { name="LRcell"; version="1.8.0"; sha256="06d02m3v2zpbvcyp0wbjlzlb0alllksjj84qwk5331ag00vf2mvb"; depends=[AnnotationHub BiocParallel dplyr ExperimentHub ggplot2 ggrepel magrittr]; }; + LedPred = derive2 { name="LedPred"; version="1.34.0"; sha256="1nxy4bqp2kv0cqhdzk9hd1lliqarhw991wnrzajd37zn7g7ahch7"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; + LinTInd = derive2 { name="LinTInd"; version="1.4.0"; sha256="1aslm76g5wxi0a3nzb0nynh9gjzar8q1vk6i1c5xr8dwprjwh0k4"; depends=[ape BiocGenerics Biostrings cowplot data_tree dplyr ggnewscale ggplot2 ggtree IRanges networkD3 pheatmap purrr reshape2 rlist S4Vectors stringdist stringr]; }; + LineagePulse = derive2 { name="LineagePulse"; version="1.20.0"; sha256="0m5blqh9c9rbs619gkvj8vs43iqb148d4mmgx3d0qgkmi9harq1d"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; + LinkHD = derive2 { name="LinkHD"; version="1.14.0"; sha256="06ddd601yv97f78a5vp6a583q22i77qdkrlwyqizj3dr9h9y5a0w"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; }; + Linnorm = derive2 { name="Linnorm"; version="2.24.1"; sha256="1sqkmjah2lxahnvwv04a970za2b8kzvmxnb41k9xrnvj0akigc2d"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; + LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.54.0"; sha256="19sl0rqk97gij1v6zxcyznxyqjlxngi5v9199mf39w1nf9hqwfw0"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; + LoomExperiment = derive2 { name="LoomExperiment"; version="1.18.0"; sha256="09ia6nx9rsw3q3rrxv1kyddik1cgbqhdv5b5658q09qwhr6hhv4i"; depends=[BiocIO DelayedArray GenomicRanges HDF5Array Matrix rhdf5 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + LymphoSeq = derive2 { name="LymphoSeq"; version="1.28.0"; sha256="0c14zz4sarpmmd75950rj9xc1x29l6ylk4n4wvbq8rj0qji3yfxi"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; + M3C = derive2 { name="M3C"; version="1.22.0"; sha256="158brq3w5h735s9yq93xx0y4p79yhgz72rpy0cyk4fjia5yaij5c"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; }; + M3Drop = derive2 { name="M3Drop"; version="1.26.0"; sha256="1gambclnknxan7m27dg646s31jq4m4x1hn98mi0cfr97r89nb5p3"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist statmod]; }; + MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.14.0"; sha256="1nf9qbl1ffra9qx230sx39c2b657z7v2rxvi8aclvvm56ki8msnk"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; }; + MACSr = derive2 { name="MACSr"; version="1.8.0"; sha256="1yxjqcl6zln5zcx701s5jyg8q22cwx9g5hhxhfb1g25fayqdmdrr"; depends=[AnnotationHub basilisk ExperimentHub reticulate S4Vectors]; }; + MADSEQ = derive2 { name="MADSEQ"; version="1.26.0"; sha256="1i9lqgz3is59wcalbljqdq2h2bwq7x047l330z0hlhwc7b9xyfln"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; + MAGAR = derive2 { name="MAGAR"; version="1.8.0"; sha256="1msdlp1sf7ndiwscbbnc9mxmyp98f2kbgk35r6dajznfpjr1dx3y"; depends=[argparse bigstatsr crlmm data_table doParallel ff HDF5Array igraph impute jsonlite plyr reshape2 rjson RnBeads RnBeads_hg19 snpStats UpSetR]; }; + MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="2.4.0"; sha256="1r822baiammialcwkyj7lh6gc506lq47cbbavdv8pkc7mkzkazlv"; depends=[Biobase clusterProfiler depmap DOSE enrichplot ggplot2 ggrepel gridExtra msigdbr pathview reshape2]; }; + MAI = derive2 { name="MAI"; version="1.6.0"; sha256="0g4zgdxsapjd49rlz3nh5cq7s5g7q2iz61mbp5s2817lqws7vl6j"; depends=[caret doParallel e1071 foreach future future_apply missForest pcaMethods S4Vectors SummarizedExperiment tidyverse]; }; + MAIT = derive2 { name="MAIT"; version="1.34.0"; sha256="09aggjr4qhf4qvh96frmkx7zfbbdpc3d8j32jkzjpdq4h2llp468"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; + MANOR = derive2 { name="MANOR"; version="1.72.0"; sha256="0ili9xy7vvw17mz44lxadv1vkf3ahpks2l34qa9yfccpalwhzriw"; depends=[GLAD]; }; + MAST = derive2 { name="MAST"; version="1.26.0"; sha256="0vm7v2anbrci6mcans9y9svd6xjm4waf2kny3rz0cjgsasw60ycx"; depends=[abind Biobase BiocGenerics data_table ggplot2 Matrix plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + MBASED = derive2 { name="MBASED"; version="1.34.0"; sha256="1h2dc1phwq551fd1kspprbsg8xl2n92aj7yna4161wdsv3ry8zi4"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; + MBAmethyl = derive2 { name="MBAmethyl"; version="1.34.0"; sha256="1nrwf8g90bifdr0nysfl4n4jsxxndf2y7bn1w5x9xf53qc7awdr8"; depends=[]; }; + MBCB = derive2 { name="MBCB"; version="1.54.0"; sha256="03mrmcklcpzms05f6yzs13hdnfn2pzywwh6xf39zjfzgv6p5mcmd"; depends=[preprocessCore tcltk2]; }; + MBECS = derive2 { name="MBECS"; version="1.4.0"; sha256="0gfr3c5k7xjd342zfdksgh22mrk3ryr4cp89nar0mlpgzxg4l4vz"; depends=[cluster dplyr ggplot2 gridExtra limma lme4 lmerTest magrittr Matrix pheatmap phyloseq rmarkdown ruv sva tibble tidyr vegan]; }; + MBQN = derive2 { name="MBQN"; version="2.12.0"; sha256="1yzm3xbp7biv1gdh9d61az2jyp1gh5xc937r0brdjyi117q28ba8"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rmarkdown SummarizedExperiment xml2]; }; + MBttest = derive2 { name="MBttest"; version="1.28.0"; sha256="11vacn77p96yvw1lm8r3afhlj1kg3qki7d26m5hap67740iwz4k3"; depends=[gplots gtools]; }; + MCbiclust = derive2 { name="MCbiclust"; version="1.24.0"; sha256="0rddn3dpyyb70320vbi45s1bj7zsxbfz1xk8l0r8l8fxifyw5n5i"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; + MDTS = derive2 { name="MDTS"; version="1.20.0"; sha256="1fdhwlrrwmkhzmy4rf5hwjzz4i7igr5mdrifyjz8v7di8mhl425s"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; + MEAL = derive2 { name="MEAL"; version="1.30.0"; sha256="03xk4nw384b6vkb827w9yv61lx71lqba3lzg061zymakwr708gsa"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; + MEAT = derive2 { name="MEAT"; version="1.12.0"; sha256="0jf25s8fh7k6kgk2mpwr9gj8nmnx96qns0dchmmmyd0y3b1vicvj"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; }; + MEB = derive2 { name="MEB"; version="1.14.0"; sha256="02xva4msagm7kqhy4iq13n3p03qgn7906skgiy298mjz0qg4dvih"; depends=[e1071 edgeR scater SingleCellExperiment SummarizedExperiment wrswoR]; }; + MEDIPS = derive2 { name="MEDIPS"; version="1.52.0"; sha256="1wl1jmfsq7mz9m98lj7lsss5bj4iyi7y1rxpmv7fldb62mj3dv47"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; + MEDME = derive2 { name="MEDME"; version="1.60.0"; sha256="0ypqdqkabzl5n2lxbvkk3ch8cgms1538dqglmr1jy7k1bx5gck3d"; depends=[Biostrings drc MASS]; }; + MEIGOR = derive2 { name="MEIGOR"; version="1.33.0"; sha256="1lc7ahwbfgnw8h00wv3n4wx6xrvdbh2f2d2s8c5aamqkap48fjgn"; depends=[CNORode deSolve Rsolnp snowfall]; }; + MGFM = derive2 { name="MGFM"; version="1.34.0"; sha256="19dkw1r8jbfk7ycsm81svi3knnqk664bzvdbicwvl34c96kfqjln"; depends=[annotate AnnotationDbi]; }; + MGFR = derive2 { name="MGFR"; version="1.26.0"; sha256="0pnzkqqahw2hjnvm36937zhr0575ajvq6dil240d2ybvd45cbrfl"; depends=[annotate biomaRt]; }; + MIMOSA = derive2 { name="MIMOSA"; version="1.37.0"; sha256="0dpz0r1kswdb4wzkpj5798gs627vzvvbwbkild2fc1gvmh9p8lwc"; depends=[Biobase coda data_table dplyr Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape rlang scales testthat tidyr]; }; + MIRA = derive2 { name="MIRA"; version="1.22.0"; sha256="0xc0y3iismkrmag1qd2wny4rfgywly0zv55bkrzl35szymmy0blh"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; + MLInterfaces = derive2 { name="MLInterfaces"; version="1.80.0"; sha256="1s5b27n01crfzrpshhiv6g0q0qf0dip1gw4nkrkg5sh5x9dsikq6"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter magrittr MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny SummarizedExperiment threejs]; }; + MLP = derive2 { name="MLP"; version="1.48.0"; sha256="1dykg6ywy7saffpn0nx2x2blf6m79xqghyzk7h9xhm74n5idy8vs"; depends=[AnnotationDbi gplots]; }; + MLSeq = derive2 { name="MLSeq"; version="2.18.0"; sha256="0x08qn8wd6qdb4nway86ir4xyi3p977jziz57v64m3qbw4iqynn3"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma pamr plyr sSeq SummarizedExperiment testthat VennDiagram xtable]; }; + MMAPPR2 = derive2 { name="MMAPPR2"; version="1.14.0"; sha256="14m41hi79f7m2qigjjcgy08awrf0654ridgm6wxcq8cmmlm68g8a"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; }; + MMDiff2 = derive2 { name="MMDiff2"; version="1.28.0"; sha256="10qqn2qlzbkcngay5l5bm5anw8c2qrx1w2jcfc235m950clr9w4p"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; + MMUPHin = derive2 { name="MMUPHin"; version="1.14.0"; sha256="14cn1mg9ffhzy1vgschl2h0wzah3c1g67q367f2m050a3z2i2ndy"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor stringr tidyr]; }; + MODA = derive2 { name="MODA"; version="1.26.0"; sha256="0rghvpp5yflpdfbxz7j7y2513s290kkpak9zn8y1lah8qh08yiby"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; + MOFA2 = derive2 { name="MOFA2"; version="1.10.0"; sha256="044z76ll56028wwd6672pbjimbwka6sf74dyjsdz1al4pp9g4f1p"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; + MOGAMUN = derive2 { name="MOGAMUN"; version="1.10.0"; sha256="1q8c1l73nshv13806a8c302pjq96kz4x14klxzf9kch7f86zm6sw"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; + MOMA = derive2 { name="MOMA"; version="1.12.0"; sha256="1vz2i3rm0cxswbablack9fb83j92d9245bmqx042169k68si4m2p"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; }; + MOSim = derive2 { name="MOSim"; version="1.14.0"; sha256="1xsgsqjj099vb97bnyac2k9lqzk0ck8khfr6vfb2yn92g9fy0bxv"; depends=[Biobase dplyr ggplot2 HiddenMarkov IRanges lazyeval matrixStats purrr rlang S4Vectors scales stringi stringr tibble tidyr zoo]; }; + MPFE = derive2 { name="MPFE"; version="1.36.0"; sha256="1hjdk7lyrkm4al2j7vjhi3wm8siwpdn0afjz0438d3ijsnxh0c1s"; depends=[]; }; + MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.18.0"; sha256="16magxm14s70yma5ddiiqp43sa3k04bqh062n3z4ni6w64l8l9d3"; depends=[BiocParallel progress SummarizedExperiment]; }; + MQmetrics = derive2 { name="MQmetrics"; version="1.8.0"; sha256="17k0g2saxkvrr4z660hyk2nplnr1ylyx8a5gljbfhpqn4gfp1795"; depends=[cowplot dplyr ggforce gghalves ggplot2 ggpubr ggrepel gridExtra gtable knitr magrittr plyr purrr RColorBrewer readr reshape2 rlang rmarkdown scales stringr tidyr]; }; + MSA2dist = derive2 { name="MSA2dist"; version="1.4.0"; sha256="1n6spzglr9hfisn5g585hvia9nasrlb9fdqfm7lrjb8p75kz3fdj"; depends=[ape Biostrings doParallel dplyr foreach GenomicRanges IRanges Rcpp RcppThread rlang seqinr stringi stringr tibble tidyr]; }; + MSPrep = derive2 { name="MSPrep"; version="1.10.0"; sha256="0ilwfdj1a34zhr2c8bdn46r1pnd3q63dg7cm8196vixbmkbpjdlq"; depends=[crmn dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; }; + MSnID = derive2 { name="MSnID"; version="1.34.0"; sha256="1mxlr76xrgp3limhr20naanhqr6b0d2wbk9l63j0pi2yckszxjjc"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; + MSnbase = derive2 { name="MSnbase"; version="2.26.0"; sha256="0qpgpvzg0vw45ia3dpkpfs56dj06crjrrg4i9l46bj8f2pgzcf0g"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; + MSstats = derive2 { name="MSstats"; version="4.8.2"; sha256="042axd68m72k8nmvk3scjyk0xpnvpj4xaf7idb9jf5h3k5yviqc0"; depends=[checkmate data_table ggplot2 ggrepel gplots limma lme4 marray MASS MSstatsConvert preprocessCore Rcpp RcppArmadillo statmod survival]; }; + MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.10.0"; sha256="0vsj3sisk6wcbnyqvv1rnk4ani9x5p0lpl19v2y6fqqch87cfv6s"; depends=[checkmate data_table log4r stringi]; }; + MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.8.0"; sha256="1ysxz82zkhnkpmphsgd2i4wl0dnckxs5cjj8crxn4wk04lw5llyi"; depends=[ggplot2 minpack_lm Rcpp]; }; + MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.6.0"; sha256="1ikhzvpsrm0qhfma1rm4c2j6ip5qf0mq9mfg96sr07w4vcpay4y7"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; }; + MSstatsPTM = derive2 { name="MSstatsPTM"; version="2.2.0"; sha256="17na70rlcbfcq5jz7pj8a7sbjsy08ldnshqpppdipfiqcxs8z4z2"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringi stringr]; }; + MSstatsQC = derive2 { name="MSstatsQC"; version="2.18.0"; sha256="1b5hy55wa34lkj5gr1jvirgjy8nk0ym6rpkvkap51b7z59dfsbn8"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; + MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.20.0"; sha256="1jj3ji8k66x3fnvz67b2ssr7jvm1j1plnpircwhk6vska0yy5jdc"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; + MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.13.0"; sha256="09gmlqxb65pa4wxh5bryb6lhs68zrfaqfl7n3k9shvzi3iw02vp3"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; }; + MSstatsShiny = derive2 { name="MSstatsShiny"; version="1.2.2"; sha256="09qkamim04hb9j3371clffxc7l26r0jzgzv8c5a6b18qkixm5hfw"; depends=[data_table dplyr DT ggplot2 ggrepel gplots Hmisc htmltools marray MSstats MSstatsConvert MSstatsPTM MSstatsTMT readxl shiny shinyBS shinybusy shinyjs tidyr uuid]; }; + MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.8.0"; sha256="0n4dc178b1wdb3w0i5hr0zdm6ijcyn7ir8rjaalpz3aq5dkvslc9"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; }; + MVCClass = derive2 { name="MVCClass"; version="1.74.0"; sha256="1vrn2c5m4w7g13s1zd1am5b02lp026zg6gvpg8dvsras0j56rhr6"; depends=[]; }; + MWASTools = derive2 { name="MWASTools"; version="1.24.0"; sha256="0klyclh5hiiwc9lc2ra3d2gcdl58jmda0xd9h499gv94mzhb6d50"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; + Maaslin2 = derive2 { name="Maaslin2"; version="1.13.0"; sha256="05xha6y6ssf80l4xb7skbjafpqww2d85l4b6wn72r5djidyxxw6y"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lme4 lmerTest logging lpsymphony MASS metagenomeSeq optparse pbapply pcaPP pheatmap pscl robustbase vegan]; }; + Macarron = derive2 { name="Macarron"; version="1.3.0"; sha256="0z29cnpfkyrcwacp7a3286xf0kgdaj5wj3r5qj68y89mrrz5gfjj"; depends=[BiocParallel data_table DelayedArray dynamicTreeCut ff logging Maaslin2 plyr psych RCurl RJSONIO SummarizedExperiment WGCNA xml2]; }; + MantelCorr = derive2 { name="MantelCorr"; version="1.70.0"; sha256="00vy5md147dr16xf072w8pr0h1a9hsr7mx99xwnhc2lr9d79ryyd"; depends=[]; }; + MassArray = derive2 { name="MassArray"; version="1.52.0"; sha256="1vxr84ld8ba8wmk2jyhixs7wy0rzgsa612n4zmxn545r3dyd3159"; depends=[]; }; + MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.66.0"; sha256="1nc1imxia71sxxvi77f91yhwxza2l8kk1d7zkp5680xzw6yd6ajr"; depends=[]; }; + MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.12.0"; sha256="17a4gvc1bgiym6z5dy0cigvary4knc4bpmq9bymjlwsg9337b4wg"; depends=[matrixStats]; }; + MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.8.0"; sha256="0dw6m2ncl3ps959qaqxawhgixm0wjljmqysmq3wjf0mhfbp38ck7"; depends=[ComplexHeatmap dplyr ExperimentHub ggplot2 Hmisc htmlwidgets impute imputeLCMD limma MASS pcaMethods plotly proDA rlang rmarkdown Rtsne shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vsn]; }; + MatrixRider = derive2 { name="MatrixRider"; version="1.32.0"; sha256="1268s521c0qvlk0zij91p7s3jcpnwibaw6zzdp8rhy62l2kpqdfs"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; + MeSHDbi = derive2 { name="MeSHDbi"; version="1.36.0"; sha256="1xkbc914vcw0wd8nxvl0ffx9hb1i7la9ah2zw7r920kiqvy37ai9"; depends=[AnnotationDbi Biobase RSQLite]; }; + MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.72.0"; sha256="1zs5f8rwh47whal5ia7f8sfhcs8jajrlmwbwvk7nns03a6i6hnvg"; depends=[]; }; + Melissa = derive2 { name="Melissa"; version="1.16.0"; sha256="0396w305mk062kr342qsck2wlcyq69wyy22pl81bi5v36cn2zb17"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; }; + Mergeomics = derive2 { name="Mergeomics"; version="1.28.0"; sha256="1sl1s8d9y09dngh3z3im2jj3bzlx93p44hq1nzxghqyijfmamj8w"; depends=[]; }; + MesKit = derive2 { name="MesKit"; version="1.10.0"; sha256="063ski3x0nabmz4g8lmcc4hgaqmfa4306z17qrm8bfj30sasz2nc"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; }; + MetCirc = derive2 { name="MetCirc"; version="1.30.0"; sha256="06g0w17sv55cc5npyqqifl2qkxh0zfwh03kr8j8gzgy0y38n6bk8"; depends=[amap circlize ggplot2 MsCoreUtils S4Vectors scales shiny Spectra]; }; + MetID = derive2 { name="MetID"; version="1.18.0"; sha256="0cfpymk36798bk8gcv4bs4j1y2q6m0ilrjncqy4106jqdb6kym3z"; depends=[ChemmineR devtools igraph Matrix stringr]; }; + MetNet = derive2 { name="MetNet"; version="1.18.0"; sha256="133iliw01yvgdpdnhblkxyy9508kavbyxm7dm3j8rrcjb0jpa6n1"; depends=[BiocParallel bnlearn corpcor dplyr GeneNet GENIE3 ggplot2 parmigene psych rlang S4Vectors stabs SummarizedExperiment tibble tidyr]; }; + MetaCyto = derive2 { name="MetaCyto"; version="1.22.0"; sha256="0pdhkq7pq6rx2wbnvr0qh1kvk78ja1a3phbv3b1fw5ky226hfcmd"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; + MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.20.0"; sha256="151ip70la12kj80c0airi1yyjbj69gnkshd6kfk88wsvq7s179id"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; }; + MetaPhOR = derive2 { name="MetaPhOR"; version="1.2.0"; sha256="1dhldl6vxp12rsbk9sdklb5r8gyi4fybfbfkxs5cb3y1ygq83vcd"; depends=[clusterProfiler ggplot2 ggrepel pheatmap RCy3 RecordLinkage stringr]; }; + MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.14.0"; sha256="11fxjv0kb65wc2237rh3340j72v3zsd4s019bi07rbpqnl246pnj"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; }; + Metab = derive2 { name="Metab"; version="1.33.0"; sha256="0fid4b3yk56z2sm6hxfp0z30nqjsky9sv4x49x912bw61amvrwky"; depends=[pander svDialogs xcms]; }; + MetaboAnnotation = derive2 { name="MetaboAnnotation"; version="1.4.1"; sha256="0kr6457ymbf44m4dwhyq8n6b49rnp986zdl4gpdmvb634s86ghcm"; depends=[BiocGenerics BiocParallel CompoundDb MetaboCoreUtils MsCoreUtils ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; + MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.8.0"; sha256="1qg66w0fxhxfp6yx6jgplj0vd4gvfwa95hr4516cdjzzwcc1xaqb"; depends=[MsCoreUtils]; }; + MetaboSignal = derive2 { name="MetaboSignal"; version="1.30.1"; sha256="0kr2agzsqvjwjqbr4icdj4gss2cgfxvdkrqqjr3lh0spbhyc6zi3"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; + MethPed = derive2 { name="MethPed"; version="1.28.0"; sha256="1gp1y9h6rkrvj0xbi915lsq5b6gvgyydq8l012pf6nm1dq8xwgzj"; depends=[Biobase randomForest]; }; + MethReg = derive2 { name="MethReg"; version="1.10.0"; sha256="0kz1a96x3qj6lafi3zxg6k5pl2gflvszb5gdbysj2535k7kz9csr"; depends=[AnnotationHub DelayedArray dplyr ExperimentHub GenomicRanges ggplot2 ggpubr IRanges MASS Matrix plyr progress pscl readr rlang S4Vectors sesame sesameData sfsmisc stringr SummarizedExperiment tibble tidyr]; }; + MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.32.0"; sha256="05yl7z8fx6p2zzr2vkm7dvyxxcvr52w3hxfgs045w1klpsnrvsr3"; depends=[Biostrings gplots seqinr stringr]; }; + MethylAid = derive2 { name="MethylAid"; version="1.34.0"; sha256="1fyw87c87irwslbnbwq890w918axxmi7k20yd10r24aw0mhph56q"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; + MethylMix = derive2 { name="MethylMix"; version="2.30.0"; sha256="1qkqvhfy04q24nf5fhjagn7fw69kv0svzlmrm3wwv7i2vwijyg3a"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; + MethylSeekR = derive2 { name="MethylSeekR"; version="1.40.0"; sha256="1bx4jw20nkk59jpic0fz95s9zq44jamjw5ppygp4gmw4b2jfqj5h"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; + Mfuzz = derive2 { name="Mfuzz"; version="2.60.0"; sha256="0rfna5ycwkx4xb2gv1wpfn7f7nz6f79w5nlkb7719l5730d81wnz"; depends=[Biobase e1071 tkWidgets]; }; + MiChip = derive2 { name="MiChip"; version="1.54.0"; sha256="0r3lgl0b2mihkr3bhpijm9qns1ig5s7pbypnwqj5rd6fmf1ksrzf"; depends=[Biobase]; }; + MiPP = derive2 { name="MiPP"; version="1.72.0"; sha256="1ifh4961092zw89rl45iirhrpmz2629avr54lqrkf748ph5icprv"; depends=[Biobase e1071 MASS]; }; + MiRaGE = derive2 { name="MiRaGE"; version="1.42.0"; sha256="0yry5n4gk46f4b7s5zd0nha782h8a72510javbb9law5iahch2ag"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; + MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.6.0"; sha256="17kmd7kfzwxw42yax654b37f3mpzfkw9fw2jncfbhp9qkkxqcvvp"; depends=[clusterProfiler config DT enrichplot ggplot2 golem gson htmltools magrittr shiny shinycustomloader shinyWidgets]; }; + MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.12.1"; sha256="1vwsvzxgpcajrigq91hyxzwifwa4j63xj5c086kmij85fsqcj0fv"; depends=[ape Biostrings cli coin data_table dplyr dtplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree ggtreeExtra magrittr MASS patchwork pillar plyr rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; + MineICA = derive2 { name="MineICA"; version="1.40.0"; sha256="0vpjf2vjg9hk1j39c5f37m2rvpspwnygs4yax4gp9i3iwvsrsf4a"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; + MinimumDistance = derive2 { name="MinimumDistance"; version="1.44.0"; sha256="1axlwnws57ldlphifd30a9hzxjhsxbjrg5k0h7lxhmrrby1cf62d"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; + MobilityTransformR = derive2 { name="MobilityTransformR"; version="1.4.0"; sha256="0dwshk5azfrvajalyjr2l8l8cfls3070p3jqk1s2j6ni85p7qxbb"; depends=[MetaboCoreUtils MSnbase Spectra xcms]; }; + ModCon = derive2 { name="ModCon"; version="1.8.0"; sha256="1vr8v88cgb7c8svghc13b8a4j4gfq77y2p8px7y0bhm3zlx97ay0"; depends=[data_table]; }; + Modstrings = derive2 { name="Modstrings"; version="1.16.0"; sha256="1q0qmcnyblnjkxnis1klgmd2zy226jr9iwwqzvrrbqs1wxpd4ap9"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; + MoleculeExperiment = derive2 { name="MoleculeExperiment"; version="1.0.1"; sha256="1ycda4sszzilmlhyv4v8gz4wzyaa8klp6wgavggzalbfbd27zx50"; depends=[data_table dplyr ggplot2 magrittr Matrix purrr rjson rlang sp SpatialExperiment terra]; }; + MoonlightR = derive2 { name="MoonlightR"; version="1.26.0"; sha256="0l91jlk1vw3ldd4pz6ndmsy44czvzckpjgihxb73scl46013rq4l"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; + Motif2Site = derive2 { name="Motif2Site"; version="1.4.0"; sha256="1paw91v8f7gf3p18kwjzxjjhqgfsyf3hgw0ppbmmp71ix4jpqirj"; depends=[BiocGenerics Biostrings BSgenome edgeR GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS mixtools S4Vectors]; }; + MotifDb = derive2 { name="MotifDb"; version="1.42.0"; sha256="18d0qj9sn4bhfjy2mwsz2nnm41xlsqjslsv69nkhv19w9zd842pw"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; + MouseFM = derive2 { name="MouseFM"; version="1.10.0"; sha256="1sfigg06lg81gfzi1ima1ixghcbyb0grzdp3k9839w7q5m7mq8zi"; depends=[biomaRt curl data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gtools httr IRanges jsonlite reshape2 rlist scales tidyr]; }; + MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.8.0"; sha256="1b1m9f9gvsfsfwh6zpfb353frwn47zn06fm3504b5capczshqbbz"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; + MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.8.0"; sha256="1iz2ipvx6z92b7ndn64w1n4c9170r3z7yqa94bbz7gg9xraw6p6q"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; + MsBackendMsp = derive2 { name="MsBackendMsp"; version="1.4.0"; sha256="0k07kmyliada0c8a0wsj8ibra3finvir0m8a007h4qqkvv8hbfla"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; + MsBackendRawFileReader = derive2 { name="MsBackendRawFileReader"; version="1.6.0"; sha256="1dl1c954y1q1ij3j1r5zz487yd212bcmv9jdmvnh62yg4dgczvah"; depends=[BiocParallel IRanges MsCoreUtils rawrr S4Vectors Spectra]; }; + MsBackendSql = derive2 { name="MsBackendSql"; version="1.0.1"; sha256="12y5qniw64gdk6rdxw7a2zvdyjsh5vz1kwjmhsjb8jfp7i6x7qhz"; depends=[BiocParallel data_table DBI IRanges MsCoreUtils progress ProtGenerics S4Vectors Spectra]; }; + MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.12.0"; sha256="055xzlq37d75ghfk87bxbsv4yifidnwxc3w2gp8mcqxwkxxhd70a"; depends=[clue MASS Rcpp S4Vectors]; }; + MsDataHub = derive2 { name="MsDataHub"; version="1.0.0"; sha256="0nxyiqagaxsjknwxf4bfg4a68bv84lkzhziwv77z5b889yiw4scw"; depends=[ExperimentHub]; }; + MsExperiment = derive2 { name="MsExperiment"; version="1.2.0"; sha256="02q7zqq838xr1bdl2a5csq3p4p72wv8whjvrqsrqbykhfan265rn"; depends=[IRanges ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; + MsFeatures = derive2 { name="MsFeatures"; version="1.8.0"; sha256="0cb4b0mf5yh8amqwa3r0mbk2f3rgq40gdlkhifk50fxnqdy4fjsh"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; }; + MsQuality = derive2 { name="MsQuality"; version="1.0.0"; sha256="0pvmmjhmhbz9j3hwrxff4x9a915qjcqcj5p8vlq956aifyrn5619"; depends=[BiocParallel ggplot2 htmlwidgets MsExperiment plotly ProtGenerics shiny shinydashboard Spectra stringr tibble tidyr]; }; + MuData = derive2 { name="MuData"; version="1.4.0"; sha256="1k2scwdl1hrqrr9blpac09z1xn7vvrrdfksq0cqfq1qxnpl4wmza"; depends=[DelayedArray Matrix MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + Mulcom = derive2 { name="Mulcom"; version="1.50.0"; sha256="0zvfa49n9bc5a3899ma89qz7lw9dkarv6h062nbn69gmyh91q8k4"; depends=[Biobase fields]; }; + MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.26.0"; sha256="00xgca1q9ai5x730bvx73f25lpwkr3dn2sia3msa49fpl4nrzr20"; depends=[Biobase BiocBaseUtils BiocGenerics DelayedArray GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; + MultiBaC = derive2 { name="MultiBaC"; version="1.10.0"; sha256="1qwf1mvw81hb929xpnx5x910f7qnax9lkylhwzcdw1814s4zj25i"; depends=[ggplot2 Matrix MultiAssayExperiment pcaMethods plotrix ropls]; }; + MultiDataSet = derive2 { name="MultiDataSet"; version="1.28.0"; sha256="1qyvwhmdv27xsyljyzyh52pn6x0wqx8rslvr2j7vqcjyywv270x6"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; + MultiMed = derive2 { name="MultiMed"; version="2.22.0"; sha256="0d5dfgnh0js465j733yb1d37ljynj2xzbcv6x1smzb2a230z264z"; depends=[]; }; + MultimodalExperiment = derive2 { name="MultimodalExperiment"; version="1.0.0"; sha256="0ayy572nnbhl00w8n1618qmrbrzix6c8zmq7q55lw6p22kmb73rw"; depends=[BiocGenerics IRanges MultiAssayExperiment S4Vectors]; }; + MungeSumstats = derive2 { name="MungeSumstats"; version="1.8.0"; sha256="0kfc8iij2vlw3zamm63sdn1jir7a5yx5yqglkr3aiv8f6hzky0ik"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr IRanges jsonlite magrittr R_utils RCurl rtracklayer stringr VariantAnnotation]; }; + MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.10.0"; sha256="1p9n5afnr4cx690w9d5q1hkwqffsbnsn72wibqcl5rbqgfsvhf8h"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; }; + NADfinder = derive2 { name="NADfinder"; version="1.24.0"; sha256="0fc7z12hwjxfcyx9pqfwzjb4s3ijr6gnm4bnz9fsr13nncl9p3rr"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; + NBAMSeq = derive2 { name="NBAMSeq"; version="1.16.0"; sha256="1l5mk5mdbqypljrnnl7zcz8mgixg44bxaflka8wkfc60757qqkbd"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; + NCIgraph = derive2 { name="NCIgraph"; version="1.48.0"; sha256="0spzrf72y34vi0c9biz37b7id087928bf3qf9sxp9gybfdk6jp7n"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; + NOISeq = derive2 { name="NOISeq"; version="2.44.0"; sha256="0cxhy4yrww6bh4z603389fikhix8rhfy04ylhm74fdmdng4jblg6"; depends=[Biobase Matrix]; }; + NPARC = derive2 { name="NPARC"; version="1.12.0"; sha256="1dx585zs94zazqy9hbrhivpn6p76a68nvlg6vng2r1qqmm2685mc"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; }; + NTW = derive2 { name="NTW"; version="1.50.0"; sha256="1vmqd9jbjpjni5511fzvgkg2q22nxadm3a7xs97n8fc8w9jyghmc"; depends=[mvtnorm]; }; + NanoMethViz = derive2 { name="NanoMethViz"; version="2.6.0"; sha256="19m5f4yl1rr384aj3jw2842ckil8l52ssl7qgr7c6laq3fmvmd73"; depends=[AnnotationDbi assertthat BiocSingular bsseq cpp11 data_table dplyr e1071 forcats fs GenomicRanges ggplot2 ggrastr glue limma patchwork purrr R_utils Rcpp readr rlang Rsamtools RSQLite S4Vectors scales scico stringr SummarizedExperiment tibble tidyr withr zlibbioc]; }; + NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.30.0"; sha256="0jh9c5z7nrxckbhs65jlp7hpsj7bg4gpgrz47x7a1kpw46f6h75p"; depends=[Biobase matrixStats Rcpp]; }; + NanoStringNCTools = derive2 { name="NanoStringNCTools"; version="1.8.0"; sha256="0s0bl4rp6pqcci48v6wybh82jn79q1jgd0x0m16xqf56nrrq05xx"; depends=[Biobase BiocGenerics Biostrings ggbeeswarm ggiraph ggplot2 ggthemes IRanges pheatmap RColorBrewer S4Vectors]; }; + NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.32.0"; sha256="0k2sgs6d25ryjlm9c17nxqqcdi3q04j3y9qb1rig23jimfvs3xs9"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; + NanoTube = derive2 { name="NanoTube"; version="1.6.0"; sha256="0bx7zm8y484y66plm01vk48a31hl2x9vn7scixaif8rp286m4wrr"; depends=[Biobase fgsea ggplot2 limma reshape]; }; + Nebulosa = derive2 { name="Nebulosa"; version="1.10.0"; sha256="0lqm9mfmaxdhhs9di2kjg2rixng78lrrikyp7blmpyqk4c41j3nh"; depends=[ggplot2 ks Matrix patchwork Seurat SingleCellExperiment SummarizedExperiment]; }; + NeighborNet = derive2 { name="NeighborNet"; version="1.18.0"; sha256="046k1799wz77ww4jhf935pfz2637dmzy7p848iyjxj1yc5g51jq8"; depends=[graph]; }; + NetActivity = derive2 { name="NetActivity"; version="1.2.0"; sha256="18yfh6c6ds552bglbdrwhrgh9r65gp6fgxplxafy6abrcdnhwzqf"; depends=[airway DelayedArray DelayedMatrixStats DESeq2 NetActivityData SummarizedExperiment]; }; + NetPathMiner = derive2 { name="NetPathMiner"; version="1.36.0"; sha256="0fbi4gbjxxxw76b9fph7gc6mqa4lyvsn5vwhfxwy50divl1w1i1r"; depends=[igraph]; }; + NetSAM = derive2 { name="NetSAM"; version="1.40.0"; sha256="056fz9zipamxq1rhrvk80yph5rvv2sackyxsbaxjpcafscj8j4gn"; depends=[AnnotationDbi biomaRt DBI doParallel foreach GO_db igraph R2HTML seriation survival WGCNA]; }; + NeuCA = derive2 { name="NeuCA"; version="1.6.0"; sha256="01bbmgmj873r3kjvsh8p1v9jzdhfzpn2rlq29bv1xf9hfvljm0ka"; depends=[e1071 keras limma SingleCellExperiment]; }; + NoRCE = derive2 { name="NoRCE"; version="1.12.0"; sha256="03pb0k638v56sws8ic92r6bq4kmr3rq9n4zhk32bmzbcnxyf4zc2"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors stringr SummarizedExperiment tidyr zlibbioc]; }; + NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.18.0"; sha256="1vip8r8588m3zcg7d49jmnacbdhh0nc0inga222v5qs4kpcr3z5k"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; }; + NormqPCR = derive2 { name="NormqPCR"; version="1.46.0"; sha256="1fq9f7q4nslls46pgf1x82karwk8kf89si5mgdbi6a73k672d0dk"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; + NuPoP = derive2 { name="NuPoP"; version="2.8.1"; sha256="1nv88nrh1gmambcdm6xvpm8zjn4qg9hq0hbpz13p624zi364qyji"; depends=[]; }; + NxtIRFcore = derive2 { name="NxtIRFcore"; version="1.6.0"; sha256="1x3645v6ar8mpmyk6hd5w3m38496g68l2vdh80vh0hhlqlrp17n2"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array IRanges magrittr NxtIRFdata plotly R_utils Rcpp RcppProgress rhdf5 rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; + OCplus = derive2 { name="OCplus"; version="1.74.0"; sha256="1s27nsm1djlwm882ylv8rbrcww9376nynwdi67a6wnx35nf43kjc"; depends=[interp multtest]; }; + ODER = derive2 { name="ODER"; version="1.6.0"; sha256="17c3hvdghli6i88yqy6dclzyad60s0d6y4hng6i4bycc9fnan41w"; depends=[BiocFileCache BiocGenerics dasper data_table derfinder dplyr GenomeInfoDb GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyr purrr rtracklayer S4Vectors stringr tibble]; }; + OGRE = derive2 { name="OGRE"; version="1.4.0"; sha256="0kzgy49a2jl8nyj7cqzcjf4gyws9zbhb45pyckl084vjg4w4wf61"; depends=[AnnotationHub assertthat data_table DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges rtracklayer S4Vectors shiny shinyBS shinydashboard shinyFiles tidyr]; }; + OLIN = derive2 { name="OLIN"; version="1.78.0"; sha256="02cjrhpsmc1g9nxrbjpw5xna41w8xdszxfycpmbpx3w6ingccppz"; depends=[limma locfit marray]; }; + OLINgui = derive2 { name="OLINgui"; version="1.74.0"; sha256="0qybr4hrwphzwhdql3di3x89dm67y2aw62ac7n24x2glv2p9xdqz"; depends=[marray OLIN tkWidgets widgetTools]; }; + OMICsPCA = derive2 { name="OMICsPCA"; version="1.18.0"; sha256="1rkzs0i1650pz9q8v6axwspd3ykvmjd95zcbrgglm2r1gxw1iihn"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; + OPWeight = derive2 { name="OPWeight"; version="1.22.0"; sha256="0fklx2c0p7h23976ywh74xsz3p55j5jq83qvqipynpxkp8b1jv7h"; depends=[MASS qvalue tibble]; }; + ORFhunteR = derive2 { name="ORFhunteR"; version="1.8.0"; sha256="03b4lz466hflprn6w3j6p0xrq9prrxd390zmn98v09819w9spl0i"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; }; + ORFik = derive2 { name="ORFik"; version="1.20.0"; sha256="1cn13dg3grimx61lhlal7cni9wh12an688y52q0n4bhwaqv9cz75"; depends=[AnnotationDbi BiocGenerics BiocParallel biomaRt biomartr Biostrings BSgenome cowplot data_table DESeq2 fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gridExtra httr IRanges jsonlite R_utils Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment xml2]; }; + OSAT = derive2 { name="OSAT"; version="1.48.0"; sha256="095zbj204z705ai1fzj70m316ihg04f93cvjyx64wk5pbqdg5p4d"; depends=[]; }; + OTUbase = derive2 { name="OTUbase"; version="1.50.0"; sha256="0n2fghi0b5f012l57lr4qsvj85kjsg80iqpsgfajkdakam860i3w"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; + OUTRIDER = derive2 { name="OUTRIDER"; version="1.18.1"; sha256="08xkpsqpgg9xjz9lalsxxvfyqjljby6q5i8awv5m2c8zn5b0mami"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; }; + OVESEG = derive2 { name="OVESEG"; version="1.16.0"; sha256="1qhraxrlqbhi3zvz53ignwd90gmxz62jblg5m8lv2alcfyfp4man"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; }; + OmaDB = derive2 { name="OmaDB"; version="2.16.0"; sha256="1qhypwk8ciqgdvg0wv0yv5y8hcg537w9icnkl3fi5jzc030y4570"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; + OmicCircos = derive2 { name="OmicCircos"; version="1.38.0"; sha256="0zqw0ccngkh00l5wk2kn6fpr249rrkm8sasrzypax943xygnh6i0"; depends=[GenomicRanges]; }; + OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.15.0"; sha256="1kn26k0lnk7hgfzk1kh5bh41zkia8a4pzsfr35mbjrflcxmvgk2w"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; }; + Omixer = derive2 { name="Omixer"; version="1.10.0"; sha256="0piqs23sdsphsynv2wqs7vmpjgsl1kymfjr3xx9nx9jrzjhh5fma"; depends=[dplyr forcats ggplot2 gridExtra magrittr readr stringr tibble tidyselect]; }; + OmnipathR = derive2 { name="OmnipathR"; version="3.8.0"; sha256="0r2nv3nbadnvqby7p5bdpl9fxjb30h0c8kjv1dkqqnhk5rbfl4hf"; depends=[checkmate crayon curl digest dplyr httr igraph jsonlite later logger magrittr progress purrr rappdirs readr readxl rlang rmarkdown rvest stringr tibble tidyr tidyselect withr xml2 yaml]; }; + OncoScore = derive2 { name="OncoScore"; version="1.28.0"; sha256="00wnw7b9sj00h6kdlbh9r8frdcy8x5vdxjc8v2cbk6avll8w2z9a"; depends=[biomaRt]; }; + OncoSimulR = derive2 { name="OncoSimulR"; version="4.2.0"; sha256="1s33kjsv72zslygg108m16wrzv4d55xn0pdjfpzy9sdgh2j8yviz"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; }; + OpenStats = derive2 { name="OpenStats"; version="1.12.0"; sha256="1pw6g4nrnmvfd5qbg3z79qzlzyf0n196vpklx8xwhd7zpr6djbkq"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; + OrderedList = derive2 { name="OrderedList"; version="1.72.0"; sha256="06z0x71k2593f8kpvh692ki2sdf73in24nn1id36vzbwpfv4dy7a"; depends=[Biobase twilight]; }; + Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.28.0"; sha256="0yrd7a7c0n6c987gyy76jidpvsdwrv2097f9wkvh4y5dd1w0mk7p"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang RSQLite S4Vectors tibble]; }; + OrganismDbi = derive2 { name="OrganismDbi"; version="1.42.0"; sha256="1pw3qd6n0xf7vq3x73612bndcqhwrqkpi29f6crazdzjcy3fivlb"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; + Oscope = derive2 { name="Oscope"; version="1.30.0"; sha256="055j7y1icikqivc795hzl1l5v5ga2bfcqk2x0kivawbrqvj4yq5v"; depends=[BiocParallel cluster EBSeq testthat]; }; + OutSplice = derive2 { name="OutSplice"; version="1.0.0"; sha256="0vwjdbwkgp9rggdcrhd5wxp68fx2yarfw2995amdxmrh2y38lsqj"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges org_Hs_eg_db Repitools S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + PAA = derive2 { name="PAA"; version="1.34.0"; sha256="00ciqvcnlsaaynvdxa05wskk2w90rjsa8syrj5rqs5yk32dzrk6s"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; + PADOG = derive2 { name="PADOG"; version="1.42.0"; sha256="13rr5wfdcvwqcrf3548hd0h9nld9k5nj9z6m1vb0a3v1frd37c6s"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; }; + PAIRADISE = derive2 { name="PAIRADISE"; version="1.16.0"; sha256="0aypxg7vg58m3gz7j2qghlxshn9sgdzawaw7axjqz957i4hv8475"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; }; + PANR = derive2 { name="PANR"; version="1.46.0"; sha256="18g5ynjiqfb1b667qwg8rxbjabw08kkbm14m6rp7sndcxwrd2z89"; depends=[igraph MASS pvclust RedeR]; }; + PAST = derive2 { name="PAST"; version="1.16.0"; sha256="1pyz1v67zycj3bhkhc0in4cic2f6ly27d6rjs4b5j88a0f5v5568"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; }; + PCAN = derive2 { name="PCAN"; version="1.28.0"; sha256="0993q5j6sd9f5p3gxrw88jg7v3zx7sk2ma9d4qfzja7x5yh2a5r3"; depends=[BiocParallel]; }; + PCAtools = derive2 { name="PCAtools"; version="2.12.0"; sha256="07kl7s2zd7nkhg4hib2mr3w5lhqy780aw53yqsd7bfsjh53k8g95"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; }; + PDATK = derive2 { name="PDATK"; version="1.8.0"; sha256="00qkn8hlx9xfzzly2w77s2nicvdqqqx7ki47yni871fyrvarmyjd"; depends=[BiocGenerics BiocParallel caret clusterRepro ConsensusClusterPlus CoreGx data_table dplyr genefu ggplot2 ggplotify igraph MatrixGenerics matrixStats MultiAssayExperiment piano plyr pROC RColorBrewer reportROC rlang S4Vectors scales SummarizedExperiment survcomp survival survminer switchBox verification]; }; + PECA = derive2 { name="PECA"; version="1.36.0"; sha256="1jx5601ccwcsljvs26xh51ibjgigb9iszm1xl0h2apnr3x8yq6n7"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; + PERFect = derive2 { name="PERFect"; version="1.14.0"; sha256="0ygbirfnp122c8jzrig5cnm6rxyhz126ixl5ca49i13kizcv2ns9"; depends=[fitdistrplus ggplot2 Matrix phyloseq psych sn zoo]; }; + PFP = derive2 { name="PFP"; version="1.7.0"; sha256="1328a73ggg7l1drjbmv67jcvlv83khn1k252mf81xj4gf213d0di"; depends=[clusterProfiler ggplot2 graph igraph KEGGgraph magrittr plyr tidyr]; }; + PICS = derive2 { name="PICS"; version="2.44.0"; sha256="1np7szl5pzjbm0zv4fcky43q4y415digsa19hwf9dd5cmb5sr29g"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; }; + PING = derive2 { name="PING"; version="2.44.0"; sha256="0gd1i3d19sl735pwl4iqfbbggcxl3klhvnzlri56hhmv16mifpz2"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; + PLPE = derive2 { name="PLPE"; version="1.60.0"; sha256="1iwpzzpisnpm8clkq33fdhb1c5cas8rl9zx9ywj3s768fgk77k9z"; depends=[Biobase LPE MASS]; }; + POMA = derive2 { name="POMA"; version="1.10.0"; sha256="0jvpz1va0ggs46i4ad881pljp5rcl7i4br5jiywhhf22pvwx4spk"; depends=[broom caret ComplexHeatmap dbscan DESeq2 dplyr ggplot2 ggrepel glasso glmnet impute limma magrittr mixOmics randomForest RankProd rmarkdown SummarizedExperiment tibble tidyr uwot vegan]; }; + POWSC = derive2 { name="POWSC"; version="1.8.0"; sha256="15lab9pibpfs6ln6jkq3k3z2zpa348g50j1fsnw4cxirwiml6sh6"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; }; + PPInfer = derive2 { name="PPInfer"; version="1.26.0"; sha256="0x03k3amikwhf44fz6wgdgqd1s3akpsz5w65ql6scz2s4j445zi6"; depends=[biomaRt fgsea ggplot2 httr igraph kernlab STRINGdb yeastExpData]; }; + PREDA = derive2 { name="PREDA"; version="1.46.0"; sha256="1xw4v9hgj9ran915nqkfc5slk1djdh8sv3hahh84imlbgqlwfjm3"; depends=[annotate Biobase lokern multtest]; }; + PROMISE = derive2 { name="PROMISE"; version="1.52.0"; sha256="197cmmzr66gg7pz8n0mll74rd4fpwygi9aymymdkqs1819mmsrr8"; depends=[Biobase GSEABase]; }; + PROPER = derive2 { name="PROPER"; version="1.32.0"; sha256="1x9wswa6bckaxipzpsc0iyqrj9337q2kdhzfs78aqacwwwy9ihdh"; depends=[edgeR]; }; + PROPS = derive2 { name="PROPS"; version="1.22.0"; sha256="0ijmi3ky6i7462xp2l2j3wmgjg1lybpn4s335ggcvq7snw4cfw37"; depends=[Biobase bnlearn reshape2 sva]; }; + PROcess = derive2 { name="PROcess"; version="1.76.0"; sha256="1bvjvx1n4n9q12p5mw58v71712x7gxx7ji6ccgr0wdwfn6xd0r8i"; depends=[Icens]; }; + PSEA = derive2 { name="PSEA"; version="1.34.0"; sha256="083xpj01pxrrj9f3kl23gr7bz7pqz7bbxbbqzq345m015rwaqnhq"; depends=[Biobase MASS]; }; + PSMatch = derive2 { name="PSMatch"; version="1.4.0"; sha256="0vw0nr300p8qfd4l7cl3jc8ds1i23rhz4mh5kjpqx1720ifwzbrv"; depends=[BiocGenerics BiocParallel igraph Matrix MsCoreUtils ProtGenerics QFeatures S4Vectors]; }; + PWMEnrich = derive2 { name="PWMEnrich"; version="4.36.0"; sha256="0qqn4bbs1dslfhzaqab3gway2ib7p1ijmqw1s5rfa4fhgpyi4wjk"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; }; + PanViz = derive2 { name="PanViz"; version="1.2.0"; sha256="1m2vsnrzai508wjhl0y6bl4x0wa05ng6lj6513d9mfrd3ix3wdb7"; depends=[colorspace data_table dplyr easycsv futile_logger igraph magrittr RColorBrewer rentrez rlang stringr tibble tidyr]; }; + PanomiR = derive2 { name="PanomiR"; version="1.4.0"; sha256="1pgfqacccq74yx99ywsf6pqapggzh38hpp4f67ql84vsnrw85fml"; depends=[clusterProfiler dplyr forcats GSEABase igraph limma metap org_Hs_eg_db preprocessCore RColorBrewer rlang tibble withr]; }; + Path2PPI = derive2 { name="Path2PPI"; version="1.30.0"; sha256="1f3szgcj8370jk6h4wk10lgcnvk4yl4zq9dnm1i04qwv1mqkgflp"; depends=[igraph]; }; + PathNet = derive2 { name="PathNet"; version="1.40.0"; sha256="0zkbz0hl514i0gd7spjw2j37arc49n238ifk981l01hlxgxsf0l1"; depends=[]; }; + PathoStat = derive2 { name="PathoStat"; version="1.26.0"; sha256="0b18m4axr77zm5bq0y5nrhyjim3sadxzhys4fqagzrn36yzd0k2v"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; + PeacoQC = derive2 { name="PeacoQC"; version="1.10.0"; sha256="0rh1mqzn7kf26i6y2j5z3wkbyxrqfpclpjrsnb9p4vhdix774z1q"; depends=[circlize ComplexHeatmap flowCore flowWorkspace ggplot2 gridExtra plyr]; }; + PepsNMR = derive2 { name="PepsNMR"; version="1.18.0"; sha256="17rbadvay3kbp4r6p023yww4biw9cl359q200ciygr7d2ffcas85"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; + PhIPData = derive2 { name="PhIPData"; version="1.8.0"; sha256="1vls3py5xn7c7zxxpwh40i8q9yir705mhvh7f1x0icl8clxh7x0i"; depends=[BiocFileCache BiocGenerics cli edgeR GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + PharmacoGx = derive2 { name="PharmacoGx"; version="3.4.0"; sha256="06f0jng8i0315399bsn3kpzjpik6ipvcjdba7yq5104a492wh0n7"; depends=[Biobase BiocGenerics BiocParallel boot caTools checkmate coop CoreGx data_table downloader ggplot2 jsonlite magicaxis MultiAssayExperiment RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment]; }; + PhenStat = derive2 { name="PhenStat"; version="2.36.0"; sha256="1q5lpn352acpzfawwch0n4dra3znb7rghg4zl7wnc146s6628pyd"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; + PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.8.0"; sha256="1izqzvasir1jsfas626m82141gd34zk6j0k4ff4n2dk4r51id37n"; depends=[doParallel dplyr foreach igraph Matrix]; }; + PhosR = derive2 { name="PhosR"; version="1.10.0"; sha256="0lcri7cfx2bvva1c48bq7rqzk9vag0rqy00myxhy3nqqp5vf16ws"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors stringi SummarizedExperiment tidyr]; }; + PhyloProfile = derive2 { name="PhyloProfile"; version="1.14.3"; sha256="0xq443hk8wba1vxghwikrkim8w3cjqzakr2hip0y5wrw19rzfv6b"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyFiles shinyjs xml2 yaml zoo]; }; + Pi = derive2 { name="Pi"; version="2.12.0"; sha256="1k6i2byxranyph1034aph1vr1jjkx4d9gsni666p60ssg05bbvbi"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; }; + Pigengene = derive2 { name="Pigengene"; version="1.26.0"; sha256="0b13bkj554w1wh6z393lw6l2ndydkblx4pck7zl0vbh2mwiiamkm"; depends=[BiocStyle bnlearn C50 clusterProfiler DBI DOSE dplyr gdata ggplot2 GO_db graph impute MASS matrixStats openxlsx partykit pheatmap preprocessCore ReactomePA Rgraphviz WGCNA]; }; + PloGO2 = derive2 { name="PloGO2"; version="1.12.0"; sha256="1s5ay04ky0bimn4kqzqakygldcd08s7d0kvbn6sdyhf39avb6vv3"; depends=[GO_db GOstats httr lattice openxlsx xtable]; }; + PoDCall = derive2 { name="PoDCall"; version="1.8.0"; sha256="1vph2lvs0wcnx56yngzw7ms2si8zq1k4imxrixzhvs0xj67qkbfc"; depends=[diptest DT ggplot2 gridExtra LaplacesDemon mclust purrr readr rlist shiny shinyjs]; }; + PrInCE = derive2 { name="PrInCE"; version="1.16.0"; sha256="012dnavlx0abizh7bfms8cn4c4hx3sps3hzivddskap5czi7drxv"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase speedglm tester tidyr]; }; + Prostar = derive2 { name="Prostar"; version="1.32.1"; sha256="1gcmxzzzgj1kj3f6mnymh6k2g1q2qwm3vxi87z8iykiqbr3ri4fs"; depends=[DAPAR DAPARdata data_table future ggplot2 gplots highcharter htmlwidgets later promises rhandsontable shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes tibble vioplot webshot]; }; + ProtGenerics = derive2 { name="ProtGenerics"; version="1.32.0"; sha256="0fgsb47qrvrl4y3yr094mas22rai5h5yl9mciadd6zcpamp2p01i"; depends=[]; }; + ProteoDisco = derive2 { name="ProteoDisco"; version="1.6.0"; sha256="04m4lqiz43fscqbxjq3ymz8mhg88sihpchdv68pizsag7bz5bzjg"; depends=[BiocGenerics BiocParallel Biostrings checkmate cleaver dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges ParallelLogger plyr rlang S4Vectors tibble tidyr VariantAnnotation XVector]; }; + ProteoMM = derive2 { name="ProteoMM"; version="1.18.0"; sha256="1f2m3jdslp139bm0l40gcp5j27vjnp5a2zk8339zpp5j6ihhhvnw"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; + PureCN = derive2 { name="PureCN"; version="2.6.1"; sha256="1mh70vkdfj1dmc2lvs59yi6lfr86mc5h72sgki6aspxmn26l95sh"; depends=[Biobase BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix mclust RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; + Pviz = derive2 { name="Pviz"; version="1.34.0"; sha256="0d6ibqvpcaxd9b4b5asvxm1q3ys42aj2x1wfwfy0lcw7r9naavcy"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; + QDNAseq = derive2 { name="QDNAseq"; version="1.36.0"; sha256="0lcf5zkv44s7xsa2svxia7inv6iz2k1kilfj5zcq80r339pj3vx4"; depends=[Biobase CGHbase CGHcall DNAcopy future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; + QFeatures = derive2 { name="QFeatures"; version="1.10.0"; sha256="1xnmd14nf4cqbfxkjsl6af312k7l27ars5g8qdnljylkn8kq276z"; depends=[AnnotationFilter Biobase BiocGenerics igraph IRanges lazyeval MsCoreUtils MultiAssayExperiment plotly ProtGenerics S4Vectors SummarizedExperiment]; }; + QSutils = derive2 { name="QSutils"; version="1.18.0"; sha256="0prwfksw60kjbg4sg9qylh89a070m8ry00h1chl50v5xj8ggx19m"; depends=[ape BiocGenerics Biostrings psych]; }; + QUBIC = derive2 { name="QUBIC"; version="1.28.0"; sha256="07vq8203z9dpim12578p81pkbfrpm3vmwnp59x3h5p69g23f7flp"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; + Qtlizer = derive2 { name="Qtlizer"; version="1.14.0"; sha256="1rnk916l9z495vic76nv9pjl6yvdrh8hkpiravw74jcy2dgnnlqz"; depends=[curl GenomicRanges httr stringi]; }; + QuartPAC = derive2 { name="QuartPAC"; version="1.32.0"; sha256="1bknjgjh9wsq5f2n7bvb2qp11cp25jaccprf70z0lpz1q93pq0x0"; depends=[data_table GraphPAC iPAC SpacePAC]; }; + QuasR = derive2 { name="QuasR"; version="1.40.0"; sha256="09k4r5a735022rc33k6a7pr98qxwy8ijsn451hcw18dimqzm78bx"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; }; + QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.34.0"; sha256="1dcn6fsp4ijj8bzca94bby41acc0hfizsyfzrvlhgpj0mzbdm2fs"; depends=[dplyr Rcpp yaml]; }; + R3CPET = derive2 { name="R3CPET"; version="1.32.0"; sha256="0fwlqwxqxpir6gjk322x7j90clzmcdkbqx6nhcxw8nw3iskvb9hh"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; + R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.50.0"; sha256="088ndhshqc1119ma1gsmgdw91hn3xndqh97xaqqqv99x4ci5my8k"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; + R4RNA = derive2 { name="R4RNA"; version="1.28.0"; sha256="1i4c9477xsp3hq5kxydrimhl6g8vshwbqgnhap5n1ykxbsval1pp"; depends=[Biostrings]; }; + RAREsim = derive2 { name="RAREsim"; version="1.4.0"; sha256="03wa414bkxg30z6syj40v41q09y981qwjqlqzryfiy1cn1wcrkfn"; depends=[nloptr]; }; + RBGL = derive2 { name="RBGL"; version="1.76.0"; sha256="0y6ghiwraw3whs57i31qnvlvqlbl9143wxv2yg48rp7qxipxvn6s"; depends=[BH graph]; }; + RBM = derive2 { name="RBM"; version="1.32.0"; sha256="184imyl3vib3953j5x8lqfdi86spp71r59qnsm9c5yh5f0i4z95z"; depends=[limma marray]; }; + RBioFormats = derive2 { name="RBioFormats"; version="1.0.0"; sha256="1ffpl9f78j2fdhl4a3sgjpcq242j4rq7sg2lnbx7c86by8bhzfsg"; depends=[EBImage rJava S4Vectors]; }; + RBioinf = derive2 { name="RBioinf"; version="1.60.0"; sha256="1wq11z55fz7jd1r081fyb336kzm5h17gfiap4abc60yxnprklq0c"; depends=[graph]; }; + RCAS = derive2 { name="RCAS"; version="1.26.0"; sha256="073fhbh0pzyca90q2irbaiwj21sci8jf9ksflx9pm9fr1giy37i4"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors]; }; + RCASPAR = derive2 { name="RCASPAR"; version="1.46.0"; sha256="0rk394h8ahqfisgsq5g5sm6ajhvriki8868jf97lz9iq1kr8fac0"; depends=[]; }; + RCM = derive2 { name="RCM"; version="1.16.0"; sha256="0pqxhjqm2sfnifhqz8n6yc53npp32cpfdvhz5xk71f93mf3cdc13"; depends=[alabama DBI edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; + RCSL = derive2 { name="RCSL"; version="1.8.0"; sha256="149bh9bd6h9qg82cnbnl9m8w8d10cw8b0z31qbyb9byfakn0a9hn"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; }; + RCX = derive2 { name="RCX"; version="1.4.0"; sha256="1mpwb0j2zgbiqprn7gs9lcz4xpnnfllmgy2j2h9wkmac4241p1p9"; depends=[igraph jsonlite plyr]; }; + RCy3 = derive2 { name="RCy3"; version="2.20.0"; sha256="0n7k0v7inz2k6zap18sqqqa4d22px9lrxvp8anqh2vmgkkd789rc"; depends=[base64enc base64url BiocGenerics fs glue gplots graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; }; + RCyjs = derive2 { name="RCyjs"; version="2.22.0"; sha256="0is771gp92m4hcvrajhrd8gi7akxrla9wwfal8pkcdac3gyv8z31"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; + RDRToolbox = derive2 { name="RDRToolbox"; version="1.50.0"; sha256="1s7ab6mdarhsyhy1lsnf8kc60ba22gp2a4ydykwlwn0hx50zw6p5"; depends=[MASS rgl]; }; + REBET = derive2 { name="REBET"; version="1.18.0"; sha256="0hhziwl6mhf8f63d2am2p1kkn15s9dd4vvlg70mzb0bw2mkfx83r"; depends=[ASSET]; }; + REDseq = derive2 { name="REDseq"; version="1.46.0"; sha256="06vlllrmpz4v2bq2lg2apzaga2mxbig05zp6y8lvvg1rdz24arjl"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; + REMP = derive2 { name="REMP"; version="1.24.0"; sha256="0aa4pbg6y528vmxl09f4z6x8vg9arm551dxrdiwm230mmvz87i13"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; + RESOLVE = derive2 { name="RESOLVE"; version="1.2.0"; sha256="06f47zkf7qx26wf5dnv1k5f8jpiwybxigi1ywf9rsl8l3waz3rds"; depends=[Biostrings BSgenome BSgenome_Hsapiens_1000genomes_hs37d5 data_table GenomeInfoDb GenomicRanges ggplot2 glmnet gridExtra IRanges lsa MutationalPatterns nnls reshape2 S4Vectors]; }; + RGMQL = derive2 { name="RGMQL"; version="1.20.0"; sha256="0y9dn0n25bw4wmvhsvggbdi7g3arjadx3n6zwq3vs9sg7f2b6920"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; + RGSEA = derive2 { name="RGSEA"; version="1.34.0"; sha256="006vixj3iniwl59vy1vqwljbs20hi0x92iaqia21yr1rzjcds00l"; depends=[BiocGenerics]; }; + RGraph2js = derive2 { name="RGraph2js"; version="1.28.0"; sha256="0faj004m1nsclhppy2h5csf5328k7hk0kr7dayg6fmybqg14mjx9"; depends=[digest graph rjson whisker]; }; + RIPAT = derive2 { name="RIPAT"; version="1.10.0"; sha256="154a79xyihxkg3sbwxz9ch0ixqlqv9gwkpsv88i55c75qyzkx2sm"; depends=[biomaRt GenomicRanges ggplot2 IRanges karyoploteR openxlsx plyr regioneR rtracklayer stringr]; }; + RITAN = derive2 { name="RITAN"; version="1.24.0"; sha256="0ii802qcrbkdhp7w6qq9zmhqa49xl3h7y43pxr20lgx3659gy9ky"; depends=[AnnotationFilter BgeeDB dynamicTreeCut EnsDb_Hsapiens_v86 ensembldb GenomicFeatures ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; + RIVER = derive2 { name="RIVER"; version="1.24.0"; sha256="1r6gy1hwbsy8xmh6ny0cv1dyw8qbkdv9nvv8jqqkfvppcc3kbrb5"; depends=[Biobase ggplot2 glmnet pROC]; }; + RImmPort = derive2 { name="RImmPort"; version="1.28.0"; sha256="0mk2in55948vpmfaaa50fclwg5zjv4hhcdzmskzlgz4y5c5w4lj5"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; + RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.24.0"; sha256="0ly526in7w5q1adaynfrhisrvzzrw6r6a4wj7snwpc2zs4by65vw"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + RLMM = derive2 { name="RLMM"; version="1.62.0"; sha256="1ip09ragnsihyimyaj2qlgpa9a214819kmp7jw0l6shmzij5g8kl"; depends=[MASS]; }; + RLSeq = derive2 { name="RLSeq"; version="1.6.0"; sha256="1nbln5dcaz5z33dqkvsbd3ld3kplfizkmaizldygrlrf6azbczwr"; depends=[AnnotationHub aws_s3 callr caretEnsemble circlize ComplexHeatmap dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggplotify ggprism pheatmap RColorBrewer regioneR RLHub rtracklayer valr VennDiagram]; }; + RLassoCox = derive2 { name="RLassoCox"; version="1.8.0"; sha256="0ks2adx6j4mdsqs7vx8wnxazlxx1hwhhzkma429zbkk600rl99vx"; depends=[glmnet igraph Matrix survival]; }; + RMassBank = derive2 { name="RMassBank"; version="3.10.0"; sha256="0qxjhg1r2n75q6wh03dbgrjk4imn0yank3bb19ma2cq9vnbj83qh"; depends=[assertthat Biobase ChemmineOB ChemmineR data_table digest enviPat httr logger MSnbase mzR R_utils rcdk Rcpp RCurl readJDX rjson S4Vectors webchem XML yaml]; }; + RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.12.0"; sha256="0l3yr6c1zgjj27vfr562q48k9j9pd0vkg3yxx7jl8962k8l5741r"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; }; + RNASeqPower = derive2 { name="RNASeqPower"; version="1.40.0"; sha256="15i1dfdznkd6hhy1xswqyniyv41ml2yjibnf0fgiz22x76sjr8ic"; depends=[]; }; + RNAdecay = derive2 { name="RNAdecay"; version="1.19.0"; sha256="1qn9ymsj87x9spnqrdga9dqnvz4s4nq7f47amd9gvmfj1q0k3v5a"; depends=[ggplot2 gplots nloptr scales TMB]; }; + RNAinteract = derive2 { name="RNAinteract"; version="1.48.0"; sha256="0wkci7j80lyr6yaw9ixcz8wdkwqa7mz6rbyxisv38dzq30l8xab1"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; + RNAmodR = derive2 { name="RNAmodR"; version="1.14.0"; sha256="1xbqz00km5nni0njchmylqppdx70nzmlamspjyz1yll295cil23m"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors]; }; + RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.14.0"; sha256="17i4v2mxa518iaa62hh4bvcp61wxnsskawdy380m35zgzj7xngvs"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; + RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.14.0"; sha256="0gfh728g10ni31fy7wriax4hyr91v8lj6nbaxm1lfgzjkfis5q3z"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; }; + RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.14.0"; sha256="08nwgw8my8gywrv0r146v4a0c68i44v36n8ly9g2m7hrlnn0gzjx"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; + RNAsense = derive2 { name="RNAsense"; version="1.14.0"; sha256="0gsr2f27haw5ddl1xw6wwnzfnzsxb6gcjvcmz1qq2jy9g7bf3bzc"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; }; + ROC = derive2 { name="ROC"; version="1.76.0"; sha256="0fq59bwc5i8zdw0v0jr5j5lm4hk6p7b88i2xndsgj4fq65yr50g1"; depends=[knitr]; }; + ROCpAI = derive2 { name="ROCpAI"; version="1.12.0"; sha256="1zv9myp0c5jfyvdwqdj2imwrv60pii4j1v9ywm6m1yhnm6w25gsx"; depends=[boot fission knitr SummarizedExperiment]; }; + ROSeq = derive2 { name="ROSeq"; version="1.12.0"; sha256="1ddfxxpn601r0yi9ca1l3z00py8nxbywbanc7d6vhsz153jjd45q"; depends=[edgeR limma pbmcapply]; }; + ROTS = derive2 { name="ROTS"; version="1.28.0"; sha256="0b2fl4wn696ia2kxihc6088ncnvd87ffq40bz58qi1bhq6krcmwv"; depends=[Biobase Rcpp]; }; + ROntoTools = derive2 { name="ROntoTools"; version="2.28.0"; sha256="1bfgm45lry0mr2ifkzwn6ah5xs3h1w6saka7dcvbaqwcsn2fnvr2"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; + RPA = derive2 { name="RPA"; version="1.56.0"; sha256="1sw792qxmw3jkxwfh69swa9k9i368k5mb0y0vwn7xqhszrhx5a9m"; depends=[affy BiocGenerics BiocStyle phyloseq rmarkdown]; }; + RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.12.0"; sha256="0qlb3fp4lj3wys2hgrdrccfdf0lf85qnk0g117n959mg3y0dqikq"; depends=[]; }; + RRHO = derive2 { name="RRHO"; version="1.40.0"; sha256="15dfy165yij16lj1nb4xf8vid4bljr6xhiywhhq893kmsshkbms8"; depends=[VennDiagram]; }; + RSVSim = derive2 { name="RSVSim"; version="1.40.0"; sha256="1wb1xhmnbhadadrscyjcrj9d5y51iczvxhawh0c9wrgd259m7s48"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; + RSeqAn = derive2 { name="RSeqAn"; version="1.20.0"; sha256="162gfmf2njx4hz5wd5i63acgkbffhlhrjk6sw3ph1l4s1zk19fpb"; depends=[Rcpp]; }; + RTCA = derive2 { name="RTCA"; version="1.52.0"; sha256="119kamvl0wa4rapy2xbi8bny9fdglivyq5nximncg42lbnp5ig30"; depends=[Biobase gtools RColorBrewer]; }; + RTCGA = derive2 { name="RTCGA"; version="1.30.0"; sha256="1y7ciq1270dc1c9y490fygrsylyzwl52fqi1vj7r75hy3rnwnv25"; depends=[assertthat data_table dplyr ggplot2 ggthemes htmltools knitr purrr RCurl rmarkdown rvest scales stringi survival survminer viridis XML xml2]; }; + RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.30.0"; sha256="03p5rgjzc1265q60jkvk92vhcib5wdnv6bz997r70q9c39y03wm5"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr RaggedExperiment RCircos RCurl RJSONIO rvest S4Vectors stringr SummarizedExperiment TCGAutils]; }; + RTN = derive2 { name="RTN"; version="2.24.0"; sha256="0m3baafrxq959ln751mhmb75m9dggwg4716r9piw4ii0bwc68gbh"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; }; + RTNduals = derive2 { name="RTNduals"; version="1.24.0"; sha256="1kmndr9bd42rcdvkb5bcxnvx1k727bwhm9416lkbx0drri3zivh9"; depends=[RTN]; }; + RTNsurvival = derive2 { name="RTNsurvival"; version="1.24.0"; sha256="0ls0zsrzrq7njzhj8sz0qrbispqi24xdzg2hpajpwgw2jsq2bbij"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; }; + RTopper = derive2 { name="RTopper"; version="1.46.0"; sha256="16y8fvwknsmyww37pxz60rag5k81wh76xiihn2lvd9xj3l2i9nha"; depends=[Biobase limma multtest]; }; + RUVSeq = derive2 { name="RUVSeq"; version="1.34.0"; sha256="0kxaaqf6py7kfndgpd0faxv6g610zj16pyvn9b4x9s3b22ib06j1"; depends=[Biobase EDASeq edgeR MASS]; }; + RUVcorr = derive2 { name="RUVcorr"; version="1.32.0"; sha256="112pqicgm94l53dr14g89d0ghrbg37qgqf0wcsvj4nb8x0anvc5b"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; + RUVnormalize = derive2 { name="RUVnormalize"; version="1.34.0"; sha256="0z8paxn57rnfg1mk96dnm9zrxahbd2203rwgwj3kzjnily6b09wp"; depends=[Biobase RUVnormalizeData]; }; + RVS = derive2 { name="RVS"; version="1.22.0"; sha256="12219in1hcgrxb73m72cnsrd1723r85hyni2f2fhd595qw1bf3q8"; depends=[GENLIB gRain kinship2 snpStats]; }; + RadioGx = derive2 { name="RadioGx"; version="2.4.0"; sha256="18zqfnwjil4mv7fgh4wvnniyybmyqkg0hk2wc57rcn0mlppa3602"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader magicaxis matrixStats RColorBrewer reshape2 S4Vectors scales SummarizedExperiment]; }; + RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.24.0"; sha256="1xs7dz5mkh9zs078g2a0izij8vxrwhzh7gyjglp057gicsca0hal"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors SummarizedExperiment]; }; + RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.20.0"; sha256="0wm50c6677qycv30h1817babaxh97ggvbxhmk24y0dk63xkk4fh3"; depends=[dnet igraph Matrix]; }; + RankProd = derive2 { name="RankProd"; version="3.26.0"; sha256="1nhhmwskj8ssapnfnj8hxmdbxknnzgcgbrdw2pzcyyjchqr7n9nf"; depends=[gmp Rmpfr]; }; + RareVariantVis = derive2 { name="RareVariantVis"; version="2.28.0"; sha256="1q6bmmdc7jh1dacadww8pvhy1xd4wrk1v097irl34hw6p2pmd15d"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + Rarr = derive2 { name="Rarr"; version="1.0.0"; sha256="1wk08l753wm46bwf02zc5944y13fa42j73558m5c1hcf2zpihx33"; depends=[httr jsonlite paws_storage R_utils stringr]; }; + RbcBook1 = derive2 { name="RbcBook1"; version="1.68.0"; sha256="0w0iccrwrvyrpr04kcdsqa7shdq4frn2kllx77947zrzszhwb1a4"; depends=[Biobase graph rpart]; }; + Rbec = derive2 { name="Rbec"; version="1.8.0"; sha256="1acibbnkp3rv6mr4vi39ksc98fa0brcycxsq1zaz8mvd7vz3b6sq"; depends=[dada2 doParallel foreach ggplot2 Rcpp readr]; }; + Rbowtie = derive2 { name="Rbowtie"; version="1.40.0"; sha256="1hfr1zdvikvygzgyy58f5rnz5jkmsrhwa930h331wx5012hhmnv7"; depends=[]; }; + Rbowtie2 = derive2 { name="Rbowtie2"; version="2.6.0"; sha256="11h4irhi0pxd0l378im455amqfamqypyl0ri2cs8nk1lg184ridr"; depends=[magrittr Rsamtools]; }; + Rbwa = derive2 { name="Rbwa"; version="1.4.0"; sha256="0lmlgrgal9z2aphr9hh88ykzplr9vlvymp15vpky3gh1mkvpz4jh"; depends=[]; }; + RcisTarget = derive2 { name="RcisTarget"; version="1.20.0"; sha256="0dp2y85mfn995rvg698xnxlkz1kd8g0byjypxx62cpfldnkrinxl"; depends=[arrow AUCell BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges GSEABase R_utils S4Vectors SummarizedExperiment tibble]; }; + Rcollectl = derive2 { name="Rcollectl"; version="1.0.1"; sha256="0bl6gha8fjgvs9l3c5kajpha3yg4ciw309yvrbz0sv178ayycmzq"; depends=[ggplot2 lubridate processx]; }; + Rcpi = derive2 { name="Rcpi"; version="1.36.0"; sha256="1a05bhsw6785i42wl1fnaqg7g3fz4yhap0wm4m6vmb7dazvblm1i"; depends=[Biostrings doParallel foreach GOSemSim rcdk RCurl rjson]; }; + Rcwl = derive2 { name="Rcwl"; version="1.16.0"; sha256="1ynpcyw85h9yzi4vwgwz6v8w9bm2hvfq189zrbl4cxn8ky62ywi3"; depends=[basilisk batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; }; + RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.16.0"; sha256="0pv1kkl0485vfmj41rp4c0ir5iw1hi9ifwhf4cfmyd4mv1ffzvqf"; depends=[BiocFileCache git2r httr rappdirs Rcwl S4Vectors]; }; + Rdisop = derive2 { name="Rdisop"; version="1.60.0"; sha256="02mj02sa9qxc6678irx7g3yzab4sa5sf4jkdjzsi9i6519xd7sa4"; depends=[Rcpp]; }; + ReQON = derive2 { name="ReQON"; version="1.46.0"; sha256="1knzla5d8n22121a9licrjh2rxrmh05304a9d4bs2f1r7aiwhgnh"; depends=[rJava Rsamtools seqbias]; }; + ReUseData = derive2 { name="ReUseData"; version="1.0.0"; sha256="0jbbbb5xhg5n1vibfr1sw0cxdq10qwhnqcdb8i78wq0qq11w71f7"; depends=[basilisk BiocFileCache jsonlite Rcwl RcwlPipelines S4Vectors yaml]; }; + ReactomeContentService4R = derive2 { name="ReactomeContentService4R"; version="1.8.0"; sha256="16fdvrkw41fffd4rca7mxnmr6bv27h2x6pc6bcahrv0riw0sfvq1"; depends=[data_table doParallel foreach httr jsonlite magick]; }; + ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.14.0"; sha256="1ij9pkimy3jwg1fkvx0zcg5pd8fjy0j0nxyicg62qlqnd2567zp2"; depends=[dplyr ggplot2 gplots httr jsonlite progress RColorBrewer tidyr]; }; + ReactomeGraph4R = derive2 { name="ReactomeGraph4R"; version="1.8.0"; sha256="0bf6z1m5pdmaifa45bqkslkdsjvg7hsalj8aiqad831wd7s9x982"; depends=[data_table doParallel foreach getPass jsonlite magrittr neo4r purrr ReactomeContentService4R rlang]; }; + ReactomePA = derive2 { name="ReactomePA"; version="1.44.0"; sha256="1hy8qz7d2826kf6pkl3v8cjwx35ap8xr92jw5wv445p3xcd1clzn"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite gson igraph reactome_db]; }; + ReadqPCR = derive2 { name="ReadqPCR"; version="1.46.0"; sha256="0i107z33vdhr69bwzmpfb8gqqfcv3aka87ws6dxg50xl2hx6ik3b"; depends=[Biobase]; }; + RedeR = derive2 { name="RedeR"; version="2.4.0"; sha256="05n092r6s9wsyxg20arjnf8mky1zs9va4gdiaicg6j5v9bzji1ys"; depends=[igraph]; }; + RedisParam = derive2 { name="RedisParam"; version="1.2.0"; sha256="0y5pxh1fsksbhficl24zdi1kcjb88iw6yabj5adbkbx5da9mvymp"; depends=[BiocParallel futile_logger redux withr]; }; + RefPlus = derive2 { name="RefPlus"; version="1.70.0"; sha256="0ii4pki0gqsfcjlfwq5hx67yf0id2krrgs8qnss4gijj27m8h86m"; depends=[affy affyPLM Biobase preprocessCore]; }; + RegEnrich = derive2 { name="RegEnrich"; version="1.10.0"; sha256="09gkmna3w0x5m0mpq1llrqsrknlx2hncn74f4fksmx4r4mj0gphd"; depends=[BiocParallel BiocSet DESeq2 DOSE dplyr fgsea ggplot2 limma magrittr randomForest reshape2 S4Vectors SummarizedExperiment tibble WGCNA]; }; + RepViz = derive2 { name="RepViz"; version="1.16.0"; sha256="0ckwfln639bzqxzps4r1kgmc78j8ps308dxgmdf7jin925f48ybx"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; }; + Repitools = derive2 { name="Repitools"; version="1.46.0"; sha256="1fx4vjssb9csqxxgqvpkj67gcr5daybk308h3hkgbgncqrb6v34s"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; + ReportingTools = derive2 { name="ReportingTools"; version="2.39.0"; sha256="15h7vqdxfv7y0f82ff7a8brqnscs324x22izlkgjk2wqahnmr2l1"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; + ResidualMatrix = derive2 { name="ResidualMatrix"; version="1.10.0"; sha256="1yay0i0nh2ax35ayqlpnmq0839syl5991hacyrbv3li3gqjc9qqv"; depends=[DelayedArray Matrix S4Vectors]; }; + Rfastp = derive2 { name="Rfastp"; version="1.10.0"; sha256="0c8nx0binn20vnxgsdpbc9lnjbc7j78f91ylgzwjw5ji4jfrzzhs"; depends=[ggplot2 Rcpp reshape2 Rhtslib rjson zlibbioc]; }; + RgnTX = derive2 { name="RgnTX"; version="1.2.0"; sha256="150cyydkhp606l6a9h05h5lxir6jqxh40n7r9r4b3yiizlvnkvbp"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges regioneR S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + Rgraphviz = derive2 { name="Rgraphviz"; version="2.44.0"; sha256="1dv1vk73achjz5b5zzw2d517nbjfrlj7gppd48pfhk1w0mvz3q61"; depends=[graph]; }; + Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.22.0"; sha256="1j8i4rmq85n7jys86a9zyj1n4qn7bhc1sqgcq8dyh7zqfdvb9bcw"; depends=[]; }; + Rhisat2 = derive2 { name="Rhisat2"; version="1.16.0"; sha256="1x9phnrk27v2r3ldqa9cd6yp2q3y5p2rm9wmra3wgrmhz9gxq1qy"; depends=[GenomicFeatures GenomicRanges SGSeq]; }; + Rhtslib = derive2 { name="Rhtslib"; version="2.2.0"; sha256="1p8imns26knh21r254n7i9xvy8xzz3zizx0kq4si7cdaf2b4xayi"; depends=[zlibbioc]; }; + RiboCrypt = derive2 { name="RiboCrypt"; version="1.6.0"; sha256="0dkdb5kmdgcg8l7l1dd1myx06sdvl7bvahqq1b5q7xz69vnslrfc"; depends=[BiocGenerics BiocParallel Biostrings bslib data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets httr IRanges jsonlite knitr markdown NGLVieweR ORFik plotly RCurl rlang shiny shinycssloaders shinyhelper shinyjqui stringr]; }; + RiboDiPA = derive2 { name="RiboDiPA"; version="1.8.0"; sha256="143wv4dh3npxv7r638hqw0l3p391jlw3frf8q03grmdyl357z5n1"; depends=[BiocFileCache BiocGenerics data_table DESeq2 doParallel elitism foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges matrixStats qvalue Rcpp reldist Rsamtools S4Vectors]; }; + RiboProfiling = derive2 { name="RiboProfiling"; version="1.30.0"; sha256="0qgzq82v4glkc0krk81zj9z71cnrvflsf1w45r9zmaw6bq45rfqd"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; + Ringo = derive2 { name="Ringo"; version="1.64.0"; sha256="0dfzj4v0js9hv0dm0nld9mmjgn5gwhiiq171862afwwx4g8li4x9"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; + Risa = derive2 { name="Risa"; version="1.42.0"; sha256="0xcnqhw6sw9w4rqm3a22y445iikhvi5zzdckpzsqcm3nhzzbkj3d"; depends=[affy Biobase biocViews Rcpp xcms]; }; + Rmagpie = derive2 { name="Rmagpie"; version="1.56.0"; sha256="1v5m9r54hz92s3lw3z5xmkwd9v9p4gih0im5wf4gvk4d3d5mwjcy"; depends=[Biobase e1071 kernlab pamr]; }; + Rmmquant = derive2 { name="Rmmquant"; version="1.18.0"; sha256="10161ap6kim55ck9lskr0xf9ydzz75bwxqbiw66chzzj5apxcs6d"; depends=[apeglm BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + RnBeads = derive2 { name="RnBeads"; version="2.18.0"; sha256="0ch3hmf1fygd2fsrsiymfbwxpg49i881gzk4lryxj6i2y0wxrija"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; + RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.10.0"; sha256="1qir074hi6x1ay8j3j6x2q9d2glkqlgygmi3bhdc8sjacxws8dna"; depends=[biomaRt dplyr edgeR ggplot2 ggpubr heatmap3 KEGGREST matlab Rcpp recount RnaSeqSampleSizeData SummarizedExperiment tidyr tidyselect]; }; + Rnits = derive2 { name="Rnits"; version="1.34.0"; sha256="1bg46ky6fbvjsvv23cl1mh2m29c8k9xzpc4hcbryfrb9mgy6rpir"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; + RolDE = derive2 { name="RolDE"; version="1.4.0"; sha256="000sy02xrnlaiac1ivdynzsmi809gfwbkhqrwlvyzyi6njixnqxj"; depends=[doParallel doRNG foreach matrixStats nlme qvalue rngtools ROTS SummarizedExperiment]; }; + Rqc = derive2 { name="Rqc"; version="1.34.0"; sha256="15w5bmcl7h3fz6qhdqz4qc3qkg3pxcmzapg4mnnckzmyg8kh0i4l"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; + Rsamtools = derive2 { name="Rsamtools"; version="2.16.0"; sha256="18kh6vmyjmv7zklqr5ifpfixjwldxgwj550c69mqfkk7m0zk52cl"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; + Rsubread = derive2 { name="Rsubread"; version="2.14.2"; sha256="1dgbvhsd0rki1skwrb4acd3cfy7c9slsjq1s7r2469zbs3xf12xc"; depends=[Matrix]; }; + Rtpca = derive2 { name="Rtpca"; version="1.10.0"; sha256="0wwrnkbzvdwayvw1x89jiknwsg95ijy0hik7lrp5k1qwm49w4dvl"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; + Rtreemix = derive2 { name="Rtreemix"; version="1.62.0"; sha256="04glj66rf1jcy4qychjg5j2ssvk8g8zc15493a9l8b63m1ws06g3"; depends=[Biobase graph Hmisc]; }; + S4Arrays = derive2 { name="S4Arrays"; version="1.0.4"; sha256="1pwkbp94r8vv43vgxcgqzbs1njhqlahfgsbf8rhr0ndy1bjyly2g"; depends=[BiocGenerics crayon IRanges Matrix S4Vectors]; }; + S4Vectors = derive2 { name="S4Vectors"; version="0.38.1"; sha256="0qpjx64ilc1niglhf6pn47damgaf5vdzwkvnlhcixqzpl28ndbs9"; depends=[BiocGenerics]; }; + SAIGEgds = derive2 { name="SAIGEgds"; version="2.0.1"; sha256="0v1zfyvx3852kidh7hiyh1al86gs5v0dkx9laj8182pwsjy4qnys"; depends=[gdsfmt Matrix Rcpp RcppArmadillo RcppParallel SeqArray]; }; + SANTA = derive2 { name="SANTA"; version="2.36.0"; sha256="0knc7lxlcjh9j144j7kirsknkk8qszmmjwg59v3050pi79m0czr9"; depends=[igraph Matrix]; }; + SBGNview = derive2 { name="SBGNview"; version="1.14.0"; sha256="0krfmwdx2f849nsbhck5p2vgfrvqh0xb1pb4vx4rapdrvc1fpihg"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; + SBMLR = derive2 { name="SBMLR"; version="1.96.0"; sha256="148r41f60hm7w1zr2971zqa4rsbjcyfdna19bm9nh9gpyk950zm2"; depends=[deSolve XML]; }; + SC3 = derive2 { name="SC3"; version="1.28.3"; sha256="1qp6596vhwfl6mmgnr2777mw153yvf60nlmvdvm71qpivli1psm6"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; + SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.42.0"; sha256="1k9qzh1bk555ax1mm8w0r4rcvwaw5x1gyrzkamhgkh48m9abp6sq"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; + SCANVIS = derive2 { name="SCANVIS"; version="1.14.0"; sha256="07i481wk0v16r5bqjvmnys6cbd228hgzb6sp1975q595y5s76gnz"; depends=[IRanges plotrix RCurl rtracklayer]; }; + SCATE = derive2 { name="SCATE"; version="1.10.0"; sha256="1fkswn9xlbr4mrnr62yzk51dri7rzbvf28whh7qhdfxgyvavw439"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; }; + SCArray = derive2 { name="SCArray"; version="1.8.0"; sha256="18zbiz4zmn0w79jca8m6j1dxqszgv83d2arzns7sc68v0hcm2m52"; depends=[BiocParallel BiocSingular DelayedArray DelayedMatrixStats gdsfmt Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SCArray_sat = derive2 { name="SCArray.sat"; version="1.0.0"; sha256="1g7b8glanhsindw5pyvzjiwp7r90y5x4vsywgyml0i7kzp56q1fp"; depends=[BiocGenerics BiocParallel BiocSingular DelayedArray gdsfmt S4Vectors SCArray Seurat SeuratObject SummarizedExperiment]; }; + SCBN = derive2 { name="SCBN"; version="1.18.0"; sha256="1b3hhj4lsafkrb86sr937vwjhymarxgx97bj3y51jg7jpqfi6gnr"; depends=[]; }; + SCFA = derive2 { name="SCFA"; version="1.10.0"; sha256="1c9z8axz0vkcfq2il4qnqzjg9qklwsf4ijwb29kn711p96anfgw7"; depends=[BiocParallel cluster coro glmnet igraph Matrix matrixStats psych RhpcBLASctl survival torch]; }; + SCOPE = derive2 { name="SCOPE"; version="1.12.0"; sha256="1hjj7zbfss456awpc2w2vn9mhvvnfri80rchn90l9niwb6w8mn37"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; }; + SCnorm = derive2 { name="SCnorm"; version="1.22.0"; sha256="13s3jhmgig7ddy3kzm8403n968h7g31rhz4jqgr740p1r4gq4gqq"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SDAMS = derive2 { name="SDAMS"; version="1.20.0"; sha256="14c5mnhfi8qi1damf6vqr9xmkay06y1rvrr03s8bm0mf4rgs0w6w"; depends=[qvalue SummarizedExperiment trust]; }; + SELEX = derive2 { name="SELEX"; version="1.32.0"; sha256="0wwbwyvmqakp3z9hgcp5wqih2zxvxxpvfczlxx3f7v11rc3mkabx"; depends=[Biostrings rJava]; }; + SEPIRA = derive2 { name="SEPIRA"; version="1.20.0"; sha256="1yhlm6l9jv8fhdhnhpj7r8cdpnrp1la287x85gcssqjnv5v4k047"; depends=[corpcor limma]; }; + SEtools = derive2 { name="SEtools"; version="1.14.0"; sha256="1j47l51blld3ph764ydxdr25x1k8ji4w2947l172gw8k7adb99ah"; depends=[BiocParallel circlize data_table DESeq2 edgeR Matrix openxlsx pheatmap S4Vectors sechm SummarizedExperiment sva]; }; + SGCP = derive2 { name="SGCP"; version="1.0.0"; sha256="1c0nghxb55v12d1sn2rhgw5bfifpishmf08dxyj07zmnn52nca4d"; depends=[annotate caret DescTools dplyr expm genefilter ggplot2 ggridges GO_db GOstats graph openxlsx org_Hs_eg_db plyr RColorBrewer reshape2 Rgraphviz RSpectra SummarizedExperiment xtable]; }; + SGSeq = derive2 { name="SGSeq"; version="1.34.0"; sha256="0qsmy85400in2xvw3bnzjnk8ni3lipqjc81npk3fmvbp6cb85njq"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; + SIAMCAT = derive2 { name="SIAMCAT"; version="2.4.0"; sha256="0qy1gp57p35rqsr2ds3j23vlnsdpca1krzqc2chyn4ar92xmxyl7"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo lgr LiblineaR lmerTest matrixStats mlr3 mlr3learners mlr3tuning paradox phyloseq pROC progress PRROC RColorBrewer scales stringr]; }; + SICtools = derive2 { name="SICtools"; version="1.30.0"; sha256="1y6gwynsmgc2z0m943cz2rph3wydhi1rgqrg0aaqzn4dsxbj5h23"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; + SIM = derive2 { name="SIM"; version="1.70.0"; sha256="0jg30rc5qar6gdnailqcpsy8wywll3fli12if6364507qfsgvxnf"; depends=[globaltest quantreg quantsmooth]; }; + SIMAT = derive2 { name="SIMAT"; version="1.32.0"; sha256="17p3bcgp830y6kpaq7mk5pjhs7kw0ki0z85aq7ar9z9flg9ayg90"; depends=[ggplot2 mzR Rcpp reshape2]; }; + SIMD = derive2 { name="SIMD"; version="1.18.0"; sha256="0r3xlrsc7xlv3crr1k0vry55cvy96mcci7n0ycf28m8wvbfiy1j2"; depends=[edgeR methylMnM statmod]; }; + SIMLR = derive2 { name="SIMLR"; version="1.26.1"; sha256="157q72666akvs3rdh46p8858hxrjnarwnc7k3hkawjx45v20sdj8"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; + SISPA = derive2 { name="SISPA"; version="1.30.0"; sha256="0glqk2p06brw9a9prccil02z82nhq2izh2sgfrlmi1kpf8mgszl3"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; + SLqPCR = derive2 { name="SLqPCR"; version="1.66.0"; sha256="0lm6inhwnzsnhs33q2fv29phw8pvlv9h0qpq4yspsin3yxzfvmzy"; depends=[]; }; + SMAD = derive2 { name="SMAD"; version="1.16.0"; sha256="0wmwlfxc6rhm6xl5bi99449wlal14q813zy37zc8cb5x4qdir4hx"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; + SMAP = derive2 { name="SMAP"; version="1.64.0"; sha256="0f1bs2njagzjvkyl0s8l71hcajh9w5drjmi7s58cjf9jpnpb07jv"; depends=[]; }; + SMITE = derive2 { name="SMITE"; version="1.28.0"; sha256="060mkzi37b6hzicy0akp761gp0r0jkpbfmv8p0ln4g4yz8q4qx4k"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; + SNAGEE = derive2 { name="SNAGEE"; version="1.40.0"; sha256="0xdsfc5p43h4hf4n06npzgghc52y2zsn9g4g2s1fjqpmsqq6lbcn"; depends=[SNAGEEdata]; }; + SNPRelate = derive2 { name="SNPRelate"; version="1.34.1"; sha256="0js932qvhlwmnrr2jfvsch2zm6w6a1z5wydns3r1bw24r817dlgh"; depends=[gdsfmt]; }; + SNPediaR = derive2 { name="SNPediaR"; version="1.26.0"; sha256="0pyz7dqn1mzgy8wp6d66mh8am0hgz67ycwgz885wgbv4i38zcbqd"; depends=[jsonlite RCurl]; }; + SNPhood = derive2 { name="SNPhood"; version="1.30.0"; sha256="1c0hmq0z34446fxha6y89x5l5sfn2maal30n9hanxpq5v5v12vvh"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + SOMNiBUS = derive2 { name="SOMNiBUS"; version="1.7.0"; sha256="19damf0rhq01gb7b1bjsivp28b57jq36zhry960yfahg09d13bqv"; depends=[Matrix mgcv VGAM]; }; + SPEM = derive2 { name="SPEM"; version="1.40.0"; sha256="1475dl8dg1xiblvsk82infkhirmk9zjznrkvk1a3brlhs5cf1lq8"; depends=[Biobase Rsolnp]; }; + SPIA = derive2 { name="SPIA"; version="2.52.0"; sha256="1f0d12y9al89c669y5c7byjgyml33jnn6s9iq1gcxm73ac6ws067"; depends=[KEGGgraph]; }; + SPIAT = derive2 { name="SPIAT"; version="1.2.2"; sha256="04vr7k8hb6x83w4my3ak6rj4c88nyyj0ma2yd74hs2c0392471cf"; depends=[apcluster dbscan dittoSeq dplyr ggplot2 gridExtra gtools mmand pracma RANN raster reshape2 sp SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tibble vroom]; }; + SPLINTER = derive2 { name="SPLINTER"; version="1.26.0"; sha256="1wh0msqbfnbygf1wjkryj8yx5f1c0w1hs5mmk8sky0sn0g32r7l4"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; + SPONGE = derive2 { name="SPONGE"; version="1.22.0"; sha256="1ayvigqj5j7s7031gpyhaz3m3z85w9j8j850pggshy9gixvy1mnp"; depends=[Biobase biomaRt caret ComplexHeatmap cvms data_table doRNG dplyr expm foreach ggplot2 ggpubr ggridges glmnet gRbase igraph iterators logging MASS MetBrewer miRBaseConverter ppcor randomForest rlang stringr tidyr tidyverse tnet]; }; + SPOTlight = derive2 { name="SPOTlight"; version="1.4.1"; sha256="1z3mprlj6fvz90mra2gfaxgfi2k7mr98w0q11js47hqbymm436wx"; depends=[ggplot2 Matrix matrixStats NMF nnls SingleCellExperiment]; }; + SPsimSeq = derive2 { name="SPsimSeq"; version="1.10.0"; sha256="12nw0954blkaf7hga26z5bi540kiwqwmfagsplk3kgavgarrnxsb"; depends=[edgeR fitdistrplus Hmisc limma mvtnorm phyloseq SingleCellExperiment WGCNA]; }; + SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.14.0"; sha256="1gb2hv2j2a12cyvc5bh448764qgs4b4maqyqgs78plwh8038i5kp"; depends=[BiocGenerics DBI dbplyr dplyr lazyeval RSQLite S4Vectors tibble]; }; + SQUADD = derive2 { name="SQUADD"; version="1.50.0"; sha256="095xp24ka9z6jn7am5a5c194i06ifp37vgll8b6xnrgj6b7xv4fq"; depends=[RColorBrewer]; }; + SRAdb = derive2 { name="SRAdb"; version="1.62.0"; sha256="0jx5gxymv1rb1xgvyypsib3iss7002r40baa4s7ycj30l3cvj0s4"; depends=[GEOquery graph RCurl RSQLite]; }; + STATegRa = derive2 { name="STATegRa"; version="1.36.0"; sha256="0nwz74s4an91lbwxp0jnm9z2nqp9k8zh8b3g5bdw6csqkxs14w5m"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; + STRINGdb = derive2 { name="STRINGdb"; version="2.12.0"; sha256="0mcp9zzbayz208b573ll69glz63b2pnrxsl900y9zd9crim6vck4"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; + STROMA4 = derive2 { name="STROMA4"; version="1.24.0"; sha256="1x3zgxkcck8ffh89mql45cp54c94n64kf9x6dan9wl24bj3x869f"; depends=[Biobase BiocParallel cluster matrixStats]; }; + STdeconvolve = derive2 { name="STdeconvolve"; version="1.4.0"; sha256="0r8zgld3dik1v2b6yg7vsd0x92c0svfhlc47g50nb34ifjhxksyn"; depends=[BiocParallel clue ggplot2 liger Matrix mgcv reshape2 scatterpie slam topicmodels viridis]; }; + SUITOR = derive2 { name="SUITOR"; version="1.2.0"; sha256="1lksk6nb9gk88mmx0f053h5n76657yxbajddrrjz2q4happ2sd1l"; depends=[BiocParallel ggplot2]; }; + SVMDO = derive2 { name="SVMDO"; version="1.0.0"; sha256="0kwsmmga6a6bv4clhpqa0pzfxhl48y61zca8bghvcwcnrrn97j1k"; depends=[AnnotationDbi BSDA caret caTools data_table DOSE dplyr e1071 golem klaR nortest org_Hs_eg_db shiny shinyFiles shinytitle sjmisc SummarizedExperiment survival]; }; + SWATH2stats = derive2 { name="SWATH2stats"; version="1.30.0"; sha256="0nh0h1cds7yayyq5f5a9l177n9hwqz8cqv6j6a30r1b6d50i7w5n"; depends=[biomaRt data_table ggplot2 reshape2]; }; + SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.54.0"; sha256="0a2l3c4hslsw69ikzbmd96iamcsq7aji2lmzq5mnm4vnw1kqf4aq"; depends=[]; }; + Scale4C = derive2 { name="Scale4C"; version="1.22.0"; sha256="0q78jzcn2xr2xfb8r0grcc2yb94xn0f6f7lxk4zzghy22isvx7b4"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; + ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.8.1"; sha256="0xhw77w28r3agv0hw7fjpn1fp2p9bz7kdzwzx7gsa8411nffmd4d"; depends=[DelayedArray Matrix S4Vectors]; }; + Sconify = derive2 { name="Sconify"; version="1.20.0"; sha256="0n60dx38bd4b3grf27lwgfhwi9x2jsx72rsxry2gdaxgg05vkma7"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; + ScreenR = derive2 { name="ScreenR"; version="1.2.0"; sha256="1y6pw0h53ybfk4fnsncd7kqil0f3k51j6zdkbprz7kmgsrc3q35r"; depends=[dplyr edgeR ggplot2 ggvenn limma magrittr patchwork purrr rlang scales stringr tibble tidyr tidyselect]; }; + SemDist = derive2 { name="SemDist"; version="1.34.0"; sha256="0w3cjw71p1azkjsw3yziy7gjpbr84bdx6jfjz5vkcgxmy0f86hz8"; depends=[annotate AnnotationDbi GO_db]; }; + SeqArray = derive2 { name="SeqArray"; version="1.40.0"; sha256="1shlixrxhkv5hl2492bql1ky2f05lswrdj4rk3rnlyz4pf5hlmwg"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SeqGSEA = derive2 { name="SeqGSEA"; version="1.40.0"; sha256="1881wf18lvhy2f3xyrfmnbcyra6z9c77lbbvvcv45j97ncw17d96"; depends=[Biobase biomaRt DESeq2 doParallel]; }; + SeqGate = derive2 { name="SeqGate"; version="1.10.0"; sha256="1v37dyz96zcgs0h44drkqw832zc90r37clk1yjhsm8m1ri59gdsh"; depends=[BiocManager GenomicRanges S4Vectors SummarizedExperiment]; }; + SeqSQC = derive2 { name="SeqSQC"; version="1.22.0"; sha256="1s9qmvz8zhg90bz7dyp0cfk354plqx7kydjafbngg4vksbm1grg7"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; + SeqVarTools = derive2 { name="SeqVarTools"; version="1.38.0"; sha256="0qs67mdnw2kl45610nldsq40smy0hg5h8mndjvqvjynwkj9xjk0a"; depends=[Biobase BiocGenerics data_table gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray]; }; + ShortRead = derive2 { name="ShortRead"; version="1.58.0"; sha256="0wpr3ksr7j5yk6m1zaa47dwdgznajsz8as4p9vf7schaqvhq1wc4"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rhtslib Rsamtools S4Vectors XVector zlibbioc]; }; + SiPSiC = derive2 { name="SiPSiC"; version="1.0.0"; sha256="11h7yn5sqispclsbxgchdraf5a35sq544sg0brp9nqhhwxjgl86r"; depends=[Matrix SingleCellExperiment]; }; + SigCheck = derive2 { name="SigCheck"; version="2.32.0"; sha256="0g407p7b4q3sp0i7wvhyxyah17jhv4gy9ssipk099y7k6chii1rl"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; + SigFuge = derive2 { name="SigFuge"; version="1.38.0"; sha256="1nn124y33bvw77ylz9dykrd43089ajghmd74f7wzhn6sfmjisd2f"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; + SigsPack = derive2 { name="SigsPack"; version="1.14.0"; sha256="03sqv0jp9539qmjb81avi8l93r25r5gsqfwzqgfpdg8d5anh7lp3"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; }; + SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.38.0"; sha256="0z53dyrkbawbj8f01gf58cljz7vsvc9dd3jfhvvc2mfxfm0bfrl1"; depends=[Biobase limma mclust Ringo]; }; + SimBu = derive2 { name="SimBu"; version="1.2.0"; sha256="1705nmf438rfbpjwy6bcc7hmkpf7vnp5b7d9ckinqbh5i2nnipl0"; depends=[basilisk BiocParallel data_table dplyr ggplot2 Matrix phyloseq proxyC RColorBrewer RCurl reticulate sparseMatrixStats SummarizedExperiment tidyr]; }; + SimFFPE = derive2 { name="SimFFPE"; version="1.12.0"; sha256="18g38n3nlihxpfh4rz1cfjw8x7xyxivpcqr1my77ljxprs6vzl6z"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; }; + SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.22.0"; sha256="1v2px6gvr0wzj2cyml57hxj5ghynlvizkchbywd3kx05j1h2mckd"; depends=[BiocGenerics DelayedArray GenomicRanges S4Vectors SummarizedExperiment]; }; + SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.12.0"; sha256="1zp38591wcidn2b6jj306vvnr6jaahf8cz3npj47rvwdm1n69643"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran stringr]; }; + SingleMoleculeFootprinting = derive2 { name="SingleMoleculeFootprinting"; version="1.8.0"; sha256="1gminz2ihxmbqij1drhhj9bfwjlfp5611q7advppq9n9nwnr18ba"; depends=[BiocGenerics Biostrings BSgenome data_table GenomeInfoDb GenomicRanges IRanges plyr QuasR RColorBrewer]; }; + SingleR = derive2 { name="SingleR"; version="2.2.0"; sha256="0dwlg86wkivsag5ffjk81nlq34lwl3kk065k9l6lak24ziq6c4ij"; depends=[beachmat BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats Matrix Rcpp S4Vectors SummarizedExperiment]; }; + SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.36.0"; sha256="075w88x7lv2fkp2ipqgxp4pzh6kbjw3nmp0qra2p4fss4j3g8d6s"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; + SpacePAC = derive2 { name="SpacePAC"; version="1.38.0"; sha256="0l6drsrxk2fxhq5dk0186z6mbc7hvyng4116y5fc8j9kxjc0rfna"; depends=[iPAC]; }; + Spaniel = derive2 { name="Spaniel"; version="1.14.0"; sha256="17b8gfyalb0hfrpv4islkvjg8d06nff79zkyl261bg51dydv2cfw"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; }; + SparseArray = derive2 { name="SparseArray"; version="1.0.8"; sha256="097iihrhxfkk0m4h5xpxs5xyddpm5s0a2d11ywc4c8by08r56bkj"; depends=[BiocGenerics IRanges Matrix MatrixGenerics matrixStats S4Arrays S4Vectors XVector]; }; + SparseSignatures = derive2 { name="SparseSignatures"; version="2.10.0"; sha256="0bqwhhcsj72a4ci0j6k5bc4rm6q8vlhmhp1h3il73imj7lkdll6z"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; }; + SpatialCPie = derive2 { name="SpatialCPie"; version="1.16.0"; sha256="1qli4hcpjxq5q1c6j08sc251d39phzrgc999zq1splzsnkbprq9s"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; + SpatialDecon = derive2 { name="SpatialDecon"; version="1.10.0"; sha256="0x3m60a93l4sg4nggnsdysxqaji8wy6rvncvhq4z67zzax5sj8ia"; depends=[Biobase GeomxTools logNormReg Matrix repmis SeuratObject]; }; + SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.10.0"; sha256="18fcfyjvp9nzadlicsnz62wva8ik0z6jqg1b906avm2vk6rbxw70"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SpatialFeatureExperiment = derive2 { name="SpatialFeatureExperiment"; version="1.2.1"; sha256="10s16yq4v8mqacgp1zqz1d2x0ydqs7wsqrlp654w4kb5lg3j8hmn"; depends=[BiocGenerics BiocNeighbors BiocParallel Matrix rjson rlang S4Vectors sf SingleCellExperiment SpatialExperiment spdep SummarizedExperiment terra]; }; + SpatialOmicsOverlay = derive2 { name="SpatialOmicsOverlay"; version="1.0.0"; sha256="10w8caqjiqsrjxzkxa8a3ngzar2kbax73rcyjgb6f2kwjmxxij3i"; depends=[base64enc Biobase BiocFileCache data_table dplyr EBImage GeomxTools ggplot2 ggtext magick pbapply plotrix RBioFormats readxl S4Vectors scattermore stringr XML]; }; + SpeCond = derive2 { name="SpeCond"; version="1.54.0"; sha256="164hks3bz5yszhq3dkdaxwggp4pdyg5k1yypkagd6myd5h5hg5nn"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; + Spectra = derive2 { name="Spectra"; version="1.10.1"; sha256="0vq5ha5m1vny7nrhgfmmkjd30zv0xaignp1a1m0xj08lnhkkmd69"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; + SpectralTAD = derive2 { name="SpectralTAD"; version="1.16.0"; sha256="1776w9b5h8dsfi0l908dv177h47rincmqypxz40dnydm5yw37md5"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; + SpidermiR = derive2 { name="SpidermiR"; version="1.30.0"; sha256="00p98wvj56v70gdc14wbbjgcvmpxn8ckb4zh8lbjdiplsn815g31"; depends=[AnnotationDbi gdata httr igraph miRNAtap miRNAtap_db org_Hs_eg_db]; }; + SpliceWiz = derive2 { name="SpliceWiz"; version="1.2.1"; sha256="1mdb8yvx0a8635fs5cq3f7a543fxv4b5fxpm3zanfmv5bv3ar909"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats DT fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array heatmaply htmltools IRanges magrittr matrixStats NxtIRFdata ompBAM patchwork pheatmap plotly progress R_utils RColorBrewer Rcpp RcppProgress rhandsontable rhdf5 rtracklayer rvest S4Vectors scales shiny shinydashboard shinyFiles shinyWidgets stringi SummarizedExperiment zlibbioc]; }; + SplicingFactory = derive2 { name="SplicingFactory"; version="1.8.0"; sha256="0mpbk29l17rnddn409nciz9jm15199082hixcs6dbxyc6gpl0vj8"; depends=[SummarizedExperiment]; }; + SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.40.0"; sha256="0lcx7q5anv04flv4fjaqz0rw0xazx5q25xjq4fq2zm0syyxa5p2z"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; + SpotClean = derive2 { name="SpotClean"; version="1.2.0"; sha256="1q81xmn56b8cvlnn7kzjm3qlys771z9z260mdcininn8sizirmqq"; depends=[dplyr ggplot2 Matrix RColorBrewer readbitmap rhdf5 rjson rlang S4Vectors Seurat SpatialExperiment SummarizedExperiment tibble viridis]; }; + StarBioTrek = derive2 { name="StarBioTrek"; version="1.26.0"; sha256="0x1x582favjv8f14milkv8cg8f4m3af0i4mscf7gfgdngy6w9wph"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; }; + Statial = derive2 { name="Statial"; version="1.2.0"; sha256="1f8jsmzp1kghady0n88rvyxy70ppzkbcc2kwq9xvr65rm1zr0q73"; depends=[BiocParallel concaveman data_table dplyr ggplot2 SingleCellExperiment spatstat_explore spatstat_geom stringr tibble tidyr tidyselect tidyverse]; }; + Streamer = derive2 { name="Streamer"; version="1.46.0"; sha256="13ww5akkmakmr9r693pv5j36mvqwrbk0vha98sm8laf4qr5my3iq"; depends=[BiocGenerics graph RBGL]; }; + Structstrings = derive2 { name="Structstrings"; version="1.16.0"; sha256="0aylyb3063cas3nbr8n5w4sq897mw9i5wfk404f4n6w5zsi0xrj9"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; }; + StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.16.0"; sha256="0gkps2pls9bpqr8sxm8zwdkn156g8r6mhf4bx17nif5s35qld1rb"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang rtracklayer S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; + SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.16.0"; sha256="0gqqanfbv6yviicw01qdg3zbhmf6s0mhvgakq4nr50a3zzd3mn58"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; }; + SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.18.0"; sha256="1dln3dyr917knd723facyb72lmwb37a7r1vwxm9brywb4whksr7i"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; + SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.30.1"; sha256="0wj82nmqg9g8663pg5f4h7hqhr1q4ghhiif2p7x1pxmh425sn554"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Arrays S4Vectors]; }; + Summix = derive2 { name="Summix"; version="2.6.0"; sha256="1bqgf45x8dwwgcv4yjh7wb86n5vg93wjw4pk0ac9fj98bmwfs877"; depends=[nloptr]; }; + SwathXtend = derive2 { name="SwathXtend"; version="2.22.0"; sha256="1shrs056xm8m0whrflrd13305mi4nfc3d2bkbrfvv1hpvaqhrp65"; depends=[e1071 lattice openxlsx VennDiagram]; }; + SynExtend = derive2 { name="SynExtend"; version="1.12.0"; sha256="1lfxhvcl1z93zggcl4gv0v748j3wba30169myq1jkjv9ixxqbhnn"; depends=[Biostrings DECIPHER IRanges S4Vectors]; }; + SynMut = derive2 { name="SynMut"; version="1.16.0"; sha256="15xa4xgaw006iaq4dk548q2wx5g9lswc59yq3n1xivxp5y7iqx2z"; depends=[BiocGenerics Biostrings seqinr stringr]; }; + TADCompare = derive2 { name="TADCompare"; version="1.10.0"; sha256="1sykkvq20490q66lzafbl76167srcjl1zmphd4b0wszwhg2xnxx9"; depends=[cluster cowplot dplyr ggplot2 ggpubr HiCcompare magrittr Matrix PRIMME RColorBrewer reshape2 tidyr]; }; + TAPseq = derive2 { name="TAPseq"; version="1.12.0"; sha256="1fgqz21fvfxaqhrvlqynsv0inkxzvjp8kac7pr0gb84p3xwg75y4"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; }; + TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.12.0"; sha256="1skakx7dy0jd180yww49swvg95irxxsfh9p58pq521hx7nwlcki2"; depends=[ASSIGN BiocParallel ComplexHeatmap DESeq2 DT edgeR gdata ggplot2 GSVA magrittr RColorBrewer reshape2 rlang ROCit S4Vectors singscore SummarizedExperiment]; }; + TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.28.2"; sha256="16hpljnqskgv7mycj0ipfxhvkyy0hcqvnrn5m416plwcx5cj2fjm"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; }; + TCGAutils = derive2 { name="TCGAutils"; version="1.20.2"; sha256="0nnfrd5x3mii9adizvz79jinlxn2lhg4civ9v0wwygmdhk7rrm1n"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; + TCseq = derive2 { name="TCseq"; version="1.23.0"; sha256="0fdz5qcp6axqgai64g6nf1ci27k1g3wlw3sczf5x5ki91jpan5vi"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; + TDbasedUFE = derive2 { name="TDbasedUFE"; version="1.0.0"; sha256="1hsjqcrp9fcn28aqvvrd51x75cyh1awzcqdqaxdxg0x2gn548jmf"; depends=[GenomicRanges MOFAdata readr rTensor shiny tximport tximportData]; }; + TDbasedUFEadv = derive2 { name="TDbasedUFEadv"; version="1.0.0"; sha256="1i38wr1imzddsxby43jg5ag3dbprpzkcqa6s7b49a6xn88qrsxrq"; depends=[Biobase DOSE enrichplot enrichR GenomicRanges hash RTCGA rTensor shiny STRINGdb TDbasedUFE]; }; + TEKRABber = derive2 { name="TEKRABber"; version="1.4.0"; sha256="01jk7iax89p5m3pqpjmbbiza1ij768wzm5b9vss9j7vyc2hrym3c"; depends=[apeglm biomaRt DESeq2 dplyr magrittr Rcpp SCBN SummarizedExperiment]; }; + TENxIO = derive2 { name="TENxIO"; version="1.2.0"; sha256="0rlwj54yzrap46xmr2y0g7nf2aq1nbvjdy3s5fqksl06kxglsgcf"; depends=[BiocBaseUtils BiocGenerics BiocIO GenomeInfoDb GenomicRanges Matrix MatrixGenerics R_utils RCurl readr S4Vectors SingleCellExperiment SummarizedExperiment]; }; + TEQC = derive2 { name="TEQC"; version="4.22.0"; sha256="1bkg66nc7lpbd1p5yshy2j3rz75p3njwddjqxdxb5jdp989qpzv8"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; + TFARM = derive2 { name="TFARM"; version="1.22.0"; sha256="1dvd240316mwsl1gm4idgk9kyj5na7galq06d0ibvjndbndyhjzl"; depends=[arules fields GenomicRanges gplots stringr]; }; + TFBSTools = derive2 { name="TFBSTools"; version="1.38.0"; sha256="136s96cmd1aq878xy9mqd4k46awywqpmm55lpvash8mv4gg02vg8"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; + TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.20.0"; sha256="01jz4ckgd4gqmx2ig7spzfyh9iqb4s3js51b99yys9jdr4dxp4cr"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; }; + TFHAZ = derive2 { name="TFHAZ"; version="1.22.0"; sha256="1bm87xw9lhn7nk0sihx1nh24bpkh7p1ragaj43jmf5wgi36pisbb"; depends=[GenomicRanges IRanges ORFik S4Vectors]; }; + TFutils = derive2 { name="TFutils"; version="1.20.0"; sha256="0jgl6s1yb94lhrbja8m3rxs4d5g1zzfm74wbkqrklppxdk91akj0"; depends=[AnnotationDbi BiocFileCache dplyr DT GSEABase httr magrittr miniUI org_Hs_eg_db readxl rjson Rsamtools shiny]; }; + TIN = derive2 { name="TIN"; version="1.32.0"; sha256="09v6pw47r54qkmrsiidq1jlb470srw0vnxf083p84rcs54rs2xbc"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; + TMixClust = derive2 { name="TMixClust"; version="1.22.0"; sha256="19qqgn541gsfvzqny359cfl7814gn8a5dfaln9mv5v01j9kc4z6h"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; + TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.16.0"; sha256="0paf92pcbqr3p99pi0p5icrvjbdp0lcvhk3nz924ky0lh1y3c66l"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; + TOAST = derive2 { name="TOAST"; version="1.14.0"; sha256="0ngm218n5cv5n4ixc0fd1i6fzxyg14kzvh0zjd4wav4wb1ya2kkp"; depends=[corpcor doParallel EpiDISH GGally ggplot2 limma nnls quadprog SummarizedExperiment tidyr]; }; + TOP = derive2 { name="TOP"; version="1.0.0"; sha256="1fz3f1a8fnzx7xm9qmfqbmcj65y4gyrilmx2gp4z8akfpv5mws4m"; depends=[assertthat caret ClassifyR directPA doParallel dplyr ggnewscale ggplot2 ggraph ggrepel ggthemes glmnet Hmisc igraph latex2exp limma magrittr plotly pROC purrr reshape2 statmod stringr survival tibble tidygraph tidyr]; }; + TPP = derive2 { name="TPP"; version="3.28.0"; sha256="1sbs0hd7drw43wizw8nrxnap1qyg67vc5bf0h1qiqjl6wa0pb3ni"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; + TPP2D = derive2 { name="TPP2D"; version="1.16.0"; sha256="1hly39vzpdg4xrzbpvy5xkq7ciihb916zdj9ciq2jxll97cxsn1f"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; + TREG = derive2 { name="TREG"; version="1.4.0"; sha256="1j1i49ddnxjwvxdrn2mz2ym0alsv73bzwnxjdwh1ygc11gz4c53z"; depends=[Matrix purrr rafalib SummarizedExperiment]; }; + TRESS = derive2 { name="TRESS"; version="1.6.0"; sha256="0jfzdjrfkq0i13ccx8a7cjbpqjzkmsrdfi7qwiwskcdxgmnygiv3"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; }; + TRONCO = derive2 { name="TRONCO"; version="2.32.0"; sha256="11xd7dlh3ka3zqap18gj5ba5m0lfhwfhl3x7yqw6w670xvh1baxs"; depends=[bnlearn circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; + TSCAN = derive2 { name="TSCAN"; version="1.38.0"; sha256="09ix74al9hxyhnsvl14c8mhiinz1i94mykxq9wk5f4q6pkm4ks8g"; depends=[combinat DelayedArray fastICA ggplot2 gplots igraph Matrix mclust mgcv plyr S4Vectors shiny SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; + TTMap = derive2 { name="TTMap"; version="1.22.0"; sha256="1wkyyrrqwc5i5x5pjav5y3vha3q2a86w1xykkfzj18bf9j3bp4pi"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; + TVTB = derive2 { name="TVTB"; version="1.26.0"; sha256="12c6cnjjapqsvsqca4461f9n4r6mnxn9ydpjqs0w0dslv368xwhy"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; + TargetDecoy = derive2 { name="TargetDecoy"; version="1.6.0"; sha256="0ahbp1aamf5jg2gf8w0kas47zzv1h7a8l2wvq80jhx4fdwvwgcvb"; depends=[ggplot2 ggpubr miniUI mzID mzR shiny]; }; + TargetScore = derive2 { name="TargetScore"; version="1.38.0"; sha256="11rx2ykiy2npvdl1vi2gaw8h8v905han1klcv1nxcfwnvsd3m31v"; depends=[Matrix pracma]; }; + TargetSearch = derive2 { name="TargetSearch"; version="2.2.0"; sha256="1ppga7v7np945ph3ns8x92mrd5788h1ls0fgbhfcni0h7h16nfdb"; depends=[assertthat ncdf4]; }; + TileDBArray = derive2 { name="TileDBArray"; version="1.10.0"; sha256="15hg0wdm1a9l2j9h4i3mgdnzbj5z7b65jfnmb3hmahxmh9rsm7pp"; depends=[DelayedArray Rcpp S4Vectors tiledb]; }; + TimiRGeN = derive2 { name="TimiRGeN"; version="1.10.0"; sha256="0p97844dh4g2qrk2rs3vh9j4g4k3hqfl5k74wnpfdkwxs5ignjqb"; depends=[biomaRt clusterProfiler dplyr FreqProf ggdendro gghighlight ggplot2 gplots gtools igraph Mfuzz MultiAssayExperiment RCy3 readxl reshape2 rWikiPathways scales stringr tidyr]; }; + TissueEnrich = derive2 { name="TissueEnrich"; version="1.20.0"; sha256="0ndwq9k73ayj01waacj267wmz045fawjx2grvhhwmzayy11n8lvp"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; + TitanCNA = derive2 { name="TitanCNA"; version="1.38.0"; sha256="1hhbhykv10jmc8q9ba594azl80vd4hk9sy28sr1mayajchzhm3gi"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; }; + TnT = derive2 { name="TnT"; version="1.22.0"; sha256="1qqap0ij2gc5akmk7ihk6460wvk0088yxw5ianpph6ag3183dxsb"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; + ToxicoGx = derive2 { name="ToxicoGx"; version="2.4.0"; sha256="1jsg551axpyms349vhgj4gg4qah3qs5ps5v006br165v74qn55i8"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader dplyr ggplot2 jsonlite limma magrittr reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; + TrajectoryGeometry = derive2 { name="TrajectoryGeometry"; version="1.8.0"; sha256="1lbs0z4gyzr5ah2gm4qd9hsmcl57x6w86s5rd1dr9grdkahzdlw4"; depends=[ggplot2 pracma rgl]; }; + TrajectoryUtils = derive2 { name="TrajectoryUtils"; version="1.8.0"; sha256="1q3c226fskl45gq28xj2w5paz2s9n9kxm0bkkgg0329w399cs09k"; depends=[igraph Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; + TransView = derive2 { name="TransView"; version="1.44.0"; sha256="06g3lmd1rh171rnk09b1af7nrlinwncd45srzzxbf3qccg2shch7"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; }; + TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.12.0"; sha256="0i8yncfc5kp296dgwr43vk0hwz7hziz43sf9ikpqxmdsi6kxd42q"; depends=[ape igraph RedeR]; }; + TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="2.8.0"; sha256="1grnz82a7l5dpwssc24yxhllqdcvza2gc4h4cc6zxjcdg5r4l1ra"; depends=[ape BiocGenerics BiocParallel Biostrings dplyr IRanges rlang S4Vectors SingleCellExperiment SummarizedExperiment treeio]; }; + Trendy = derive2 { name="Trendy"; version="1.22.0"; sha256="1fhiyk2kz8z2pgi02fi37xxn5sv2nfspm756srlwvffbghjhafis"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; + TurboNorm = derive2 { name="TurboNorm"; version="1.48.0"; sha256="08556zs1kdjrj37ypkfrffi1saqgy3p2bjl77xc12az3bxlk04qj"; depends=[affy convert lattice limma marray]; }; + TypeInfo = derive2 { name="TypeInfo"; version="1.66.0"; sha256="1k0f6br47a21fkk1pys2fk41bp0xvgqv94fb7qkqi7n10ibydh7v"; depends=[]; }; + UCell = derive2 { name="UCell"; version="2.4.0"; sha256="01qcwmiqri4xvwr3j4k1g062rfj6bbc0bvh0ifq1jq2xrm1azw9y"; depends=[BiocNeighbors BiocParallel data_table Matrix SingleCellExperiment SummarizedExperiment]; }; + UMI4Cats = derive2 { name="UMI4Cats"; version="1.10.0"; sha256="13xfg6y40fg4yrw74kcj427ynypkpy3a625xqx5gmgqsdi3ii66x"; depends=[annotate BiocFileCache BiocGenerics Biostrings BSgenome cowplot DESeq2 dplyr fda GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magick magrittr org_Hs_eg_db R_utils rappdirs Rbowtie2 RColorBrewer regioneR reshape2 rlang Rsamtools S4Vectors scales ShortRead stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene zoo]; }; + UNDO = derive2 { name="UNDO"; version="1.42.0"; sha256="0y4fgiyz6dzf7vaa0klsy2brrg86l3ycpd735rg0gxjs1lj80ln1"; depends=[Biobase BiocGenerics boot MASS nnls]; }; + Ularcirc = derive2 { name="Ularcirc"; version="1.18.0"; sha256="1vp5d78hcc7wnsvd20cxkj3ad8gbgzjsj6g8zrahzvaqqp2jdbwz"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr plotgardener R_utils S4Vectors shiny shinydashboard shinyFiles shinyjs yaml]; }; + UniProt_ws = derive2 { name="UniProt.ws"; version="2.40.0"; sha256="0a2a106dlrzszj7hjd8qf4rnsn82r01s0vg3b4gkx6d2hv6kfvh5"; depends=[AnnotationDbi BiocBaseUtils BiocFileCache BiocGenerics httpcache httr jsonlite progress rjsoncons RSQLite]; }; + Uniquorn = derive2 { name="Uniquorn"; version="2.20.0"; sha256="1k2r966i4wqvglb120j52rgb6g9q21n5zi37ma2dd346ywvw03yn"; depends=[data_table doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; + VAExprs = derive2 { name="VAExprs"; version="1.6.0"; sha256="125fybn16imba96m5k6k1rnqb8il1y4xihh7ix7im66pv83wrgw2"; depends=[CatEncoders DeepPINCS DiagrammeR keras mclust purrr scater SingleCellExperiment SummarizedExperiment tensorflow]; }; + VCFArray = derive2 { name="VCFArray"; version="1.16.0"; sha256="17y7pz9k8czxndb04zvz37gbk4lfjskbbwap6495fdkwn9v9i6hf"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + VDJdive = derive2 { name="VDJdive"; version="1.2.0"; sha256="1m8dc6l4limam33dnzy35m9wbzj99igp8zv9fh67ad4wf2s0ss3k"; depends=[basilisk BiocParallel cowplot ggplot2 gridExtra IRanges Matrix RColorBrewer reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; + VERSO = derive2 { name="VERSO"; version="1.10.0"; sha256="1i058zax2hwkx8m32dbp7g4s5y7vf67rmbd1q2awy2nf5wds2zgn"; depends=[ape data_tree Rfast]; }; + VaSP = derive2 { name="VaSP"; version="1.12.0"; sha256="0ng86j5j9ddv53rlh478fqqdikna0jn7v2faq02mcd79n397mmh8"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors]; }; + VanillaICE = derive2 { name="VanillaICE"; version="1.62.0"; sha256="06fmipljljsh98p39rf7ycyji91jjrsz1nzsnd3wjjc3i6apkhdv"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; + VarCon = derive2 { name="VarCon"; version="1.8.0"; sha256="0p4sfdhbxqdwwggp0gf8c3kmldvfah7i9855dbxa4n70gw7125sc"; depends=[Biostrings BSgenome GenomicRanges ggplot2 IRanges shiny shinycssloaders shinyFiles]; }; + VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.46.0"; sha256="0masx496cd4ypz6r0l8kk8vi81sipqdnx4iyifjvkrds1p87mvsm"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges MatrixGenerics Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; + VariantExperiment = derive2 { name="VariantExperiment"; version="1.14.0"; sha256="1dld5r9vqxj8gr93d09lqzyr34d50h2rzvmkl4z7xgxnd9i56i48"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SNPRelate SummarizedExperiment]; }; + VariantFiltering = derive2 { name="VariantFiltering"; version="1.36.0"; sha256="1j9fkqsxq7z3w2m435lqnrm8d17cd7l4873h26slmxhdazc9n94i"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; + VariantTools = derive2 { name="VariantTools"; version="1.42.0"; sha256="1vkdw626r1ffdsvry6qwhd1i3lkyb9wzrp9zf3dfafi02cap6r47"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + VegaMC = derive2 { name="VegaMC"; version="3.38.0"; sha256="0vz8jj1vaghbs6i2m4ik2lkhjn3vz8qla8i8kgmbc4wj5ny32q9k"; depends=[Biobase biomaRt]; }; + VennDetail = derive2 { name="VennDetail"; version="1.16.0"; sha256="126a0zpn6vw5l65zlcd8m53gfs4fdgj1nzw1fv0bqk8jiv44q87b"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; }; + ViSEAGO = derive2 { name="ViSEAGO"; version="1.14.0"; sha256="1d8473i0hk4d6kncvrv7xrsbayjkwnpln22d7xrll9kmhvkr679b"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; }; + Voyager = derive2 { name="Voyager"; version="1.2.3"; sha256="1wk34j63fxh3kic2cfw4x6jrghig4nxq2pvdxd1qygmbgfmh727m"; depends=[BiocParallel bluster ggnewscale ggplot2 lifecycle Matrix patchwork rlang RSpectra S4Vectors scales scico sf SingleCellExperiment sparseMatrixStats SpatialExperiment SpatialFeatureExperiment spdep SummarizedExperiment terra]; }; + VplotR = derive2 { name="VplotR"; version="1.10.0"; sha256="02b82ajbq2448b9h6jx24jsrxavgm6bfn6kk1v2xf2fcipdx8chs"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; }; + Wrench = derive2 { name="Wrench"; version="1.18.0"; sha256="18x12395928d0mf8kffmdjqkdxrzgqzzhhvs7sdzldwyas6hfg2h"; depends=[limma locfit matrixStats]; }; + XDE = derive2 { name="XDE"; version="2.46.0"; sha256="096pbkj4sw9kx2k25yw78zb2y615w86cvrgjk1xkvyi0w6v8mk6m"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; }; + XINA = derive2 { name="XINA"; version="1.18.0"; sha256="1byk8xgn9rwfbi677b99ysxi4a9n58fr3hbnwjzhnziy2n2cd703"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; + XNAString = derive2 { name="XNAString"; version="1.8.0"; sha256="0xq39n1y807vv14fx57w6iz3kln384c6igmdphi1cli7b228xyh5"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; }; + XVector = derive2 { name="XVector"; version="0.40.0"; sha256="1v10hfz658gnb6p7pzdl28jbyypv91wx70i0dvi384nfgznhvmj2"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; + Xeva = derive2 { name="Xeva"; version="1.16.0"; sha256="0q1y9qlfr7qbgdmxfrwizx94qp5ddsmkq295lh87qhjx8vv90fcs"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; }; + YAPSA = derive2 { name="YAPSA"; version="1.25.0"; sha256="0xva7vljq2k78rzjnjlp4x3ylwk86jaqn2cgbff4h4sb8rfdya7c"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMRplus pracma reshape2 SomaticSignatures VariantAnnotation]; }; + ZygosityPredictor = derive2 { name="ZygosityPredictor"; version="1.0.0"; sha256="0xxzn2v5q337affshadd7430gcpk9bfnraizbmlhg9kmbdjxfchp"; depends=[DelayedArray dplyr GenomicAlignments GenomicRanges IRanges purrr Rsamtools stringr tibble VariantAnnotation]; }; + a4 = derive2 { name="a4"; version="1.48.0"; sha256="0n49scwwmg51gcakbc0bfjcy1lcpdxg974l11yk35kj0bg9ynpgi"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; + a4Base = derive2 { name="a4Base"; version="1.48.0"; sha256="01c8rps321820b0pchfqv8shglb26rys7hqkwygpzzx3jj310v8x"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; }; + a4Classif = derive2 { name="a4Classif"; version="1.48.0"; sha256="1z5xypz5jvb06pk71x6953iirhh1w1mggm0pxqibg0ag9lx2zzmv"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; }; + a4Core = derive2 { name="a4Core"; version="1.48.0"; sha256="14q9q3dxnmmm491af53hd0dwwqiz47xxrwy05axh85x4fh01j3xx"; depends=[Biobase glmnet]; }; + a4Preproc = derive2 { name="a4Preproc"; version="1.48.0"; sha256="1dxh0zbv4z4gqnwbv7yn247gx7cqv68vb43p6f98c2kyqilfpjg9"; depends=[Biobase BiocGenerics]; }; + a4Reporting = derive2 { name="a4Reporting"; version="1.48.0"; sha256="0lx7fx2vlpq3c347gx842qlcvnzl0r25i5a55l0qbf8rb5liq2yv"; depends=[xtable]; }; + aCGH = derive2 { name="aCGH"; version="1.78.0"; sha256="0k8fbwhh1w0b0zy5qgixmcnwxi3v78f1bjmjg1yx6paniwk58bzn"; depends=[Biobase cluster multtest survival]; }; + abseqR = derive2 { name="abseqR"; version="1.18.0"; sha256="05kcwmv3d59lrdnpi82701biwawnnpfvpwr170xdi3hfdff6g59c"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; + acde = derive2 { name="acde"; version="1.30.0"; sha256="088dq6mc9m1bx0dprcz8cdpfp447lnxq7420r139mhcik0z21vky"; depends=[boot]; }; + adSplit = derive2 { name="adSplit"; version="1.70.0"; sha256="0nbdcrc2wiq3mkpayjslz66ik2vk3h3f18zg6df9xaivanxrkk5z"; depends=[AnnotationDbi Biobase cluster GO_db KEGGREST multtest]; }; + adductomicsR = derive2 { name="adductomicsR"; version="1.16.0"; sha256="17cm65n2awbwmk5i8h1n30abk6pww42ngcy9m24dxz1qdbnvx5fn"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; }; + affxparser = derive2 { name="affxparser"; version="1.72.0"; sha256="0n86my3bzy3g7xn60kizs5ym5m016zrkg7dv96kx246mrnv0ax8y"; depends=[]; }; + affy = derive2 { name="affy"; version="1.78.0"; sha256="15hpxflygpy1sid0c4hlzmsc13nqyzs6j74md0ri478qysiqjnpf"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; + affyContam = derive2 { name="affyContam"; version="1.58.0"; sha256="07a6kd51rlj433yxmyd2j8nl8qn1hw8wv3mk270dp8xxlk613y3p"; depends=[affy affydata Biobase]; }; + affyILM = derive2 { name="affyILM"; version="1.52.0"; sha256="02g0bg21ms0gmq6dvdcj91b0p47ppqcfvgj73y0mbdx6prrmcagx"; depends=[affxparser affy Biobase gcrma]; }; + affyPLM = derive2 { name="affyPLM"; version="1.76.1"; sha256="1660nn4541f2k5qpzxkkkf9h92ndzqr0j1jpzh4czs466766kn8y"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; + affycomp = derive2 { name="affycomp"; version="1.76.0"; sha256="1bsav6d3dhn2fs7gjd1jvrb448ckxw5l6ikrdv63cdnnjk0dxl62"; depends=[Biobase]; }; + affycoretools = derive2 { name="affycoretools"; version="1.72.0"; sha256="1h065fhw0n2ga74csyhqbj4qfhkg058pqa684ixcski4rhsd7hcf"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; + affyio = derive2 { name="affyio"; version="1.70.0"; sha256="1r1c0iwix0n8r433x4bv8hvzhkablc4xkdgg2b1fk4ijhd1iwf3c"; depends=[zlibbioc]; }; + affylmGUI = derive2 { name="affylmGUI"; version="1.74.0"; sha256="1m1gvz313h4x080889b05fjq60wn57dxlgq03qkwy65scl3x2fcn"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; + aggregateBioVar = derive2 { name="aggregateBioVar"; version="1.10.0"; sha256="0g7n6dj1scad833y2182946hn3yh4jad20wvw9ic8gmqb438vihj"; depends=[Matrix rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble]; }; + agilp = derive2 { name="agilp"; version="3.32.0"; sha256="0rm646iqc8hf8vfk0pdg064hm9k4k371bp1q4k7z2l16zhs8a07r"; depends=[]; }; + airpart = derive2 { name="airpart"; version="1.8.0"; sha256="024vcxf23irlysc8srqii3zqhhldpwdcj0i4zzhz18x3bdy9cbj0"; depends=[apeglm clue ComplexHeatmap dplyr dynamicTreeCut emdbook forestplot ggplot2 lpSolve matrixStats mclust pbapply plyr RColorBrewer rlang S4Vectors scater SingleCellExperiment smurf SummarizedExperiment]; }; + alabaster = derive2 { name="alabaster"; version="1.0.0"; sha256="0jmi44z8ds9i11d7pkkm93a7rnrxm2abmwmx606vv3kd7wxciah6"; depends=[alabaster_base alabaster_bumpy alabaster_mae alabaster_matrix alabaster_ranges alabaster_sce alabaster_se alabaster_spatial alabaster_string alabaster_vcf]; }; + alabaster_base = derive2 { name="alabaster.base"; version="1.0.0"; sha256="1i5hn3fspp6gg0n14zhv7x5i6n8c9n93z0nc8b7dfjd12zf27wbl"; depends=[alabaster_schemas jsonlite jsonvalidate Rcpp rhdf5 Rhdf5lib S4Vectors]; }; + alabaster_bumpy = derive2 { name="alabaster.bumpy"; version="1.0.0"; sha256="1byzdbhnpcmbxg0074ri7n9yqhmx0cgawhr0y53d5qxv8nhgap9m"; depends=[alabaster_base BiocGenerics BumpyMatrix IRanges Matrix S4Vectors]; }; + alabaster_mae = derive2 { name="alabaster.mae"; version="1.0.0"; sha256="0yj2kzb4x0a20i855l3vljr0cq4slg2jf6q99ahg4c99vyc3nx93"; depends=[alabaster_base alabaster_se MultiAssayExperiment S4Vectors]; }; + alabaster_matrix = derive2 { name="alabaster.matrix"; version="1.0.0"; sha256="0l0m9qs58q2kfy2076w4dzlqlg7lbrf40r7dq5n2hkqzp6yj8x33"; depends=[alabaster_base DelayedArray HDF5Array Matrix rhdf5]; }; + alabaster_ranges = derive2 { name="alabaster.ranges"; version="1.0.0"; sha256="0bb9qqmd7vxlzmpp345izr4w27qq0gjxq8xqmyrdc6ap45j9x1xg"; depends=[alabaster_base BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + alabaster_sce = derive2 { name="alabaster.sce"; version="1.0.0"; sha256="12xzii527qmr2cj4zsx65dfn36h5jhg951sw90gwngycns9ci5yn"; depends=[alabaster_base alabaster_se SingleCellExperiment]; }; + alabaster_schemas = derive2 { name="alabaster.schemas"; version="1.0.2"; sha256="1rpkvhj3ch6bjbj4r3c5gf3nr1wfjq4vfkzvpjal9x3acwnwbm5d"; depends=[]; }; + alabaster_se = derive2 { name="alabaster.se"; version="1.0.0"; sha256="0x87zdls1qkhha7zfgwv4qcgxnncg98s61sx3iiva2717bqpbk61"; depends=[alabaster_base alabaster_matrix alabaster_ranges BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + alabaster_spatial = derive2 { name="alabaster.spatial"; version="1.0.0"; sha256="1afz84q52y5v0ha68ax6d9h36mmmp5mhgca1c4s9yig5f4ffd24m"; depends=[alabaster_base alabaster_sce jsonlite S4Vectors SpatialExperiment SummarizedExperiment]; }; + alabaster_string = derive2 { name="alabaster.string"; version="1.0.1"; sha256="015wi8y1vqmk9gzd1zflp72cnsfrvlp1pnjv0hxry8jw16238g7a"; depends=[alabaster_base Biostrings]; }; + alabaster_vcf = derive2 { name="alabaster.vcf"; version="1.0.0"; sha256="0p956zqg4z94n0p3drvw362mmvd91nkai82m9sg6janzxkvhrfcl"; depends=[alabaster_base alabaster_se alabaster_string Rsamtools S4Vectors VariantAnnotation]; }; + alevinQC = derive2 { name="alevinQC"; version="1.16.0"; sha256="014jxp2ymxiywp2qa1b9f7iszgf95v03h9kgk8ljabnbia1zsl67"; depends=[cowplot dplyr DT GGally ggplot2 Rcpp rjson rlang rmarkdown shiny shinydashboard tximport]; }; + alpine = derive2 { name="alpine"; version="1.26.0"; sha256="1md4m9ln1mpxf7d2h7jnsjyi4zrviiqn9fzk1gkz2n6qj7jwpqbb"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; + altcdfenvs = derive2 { name="altcdfenvs"; version="2.62.0"; sha256="1jpimj195rdw86pp623ylrmcxkxmn8qmc84vsw9prnf3gdz3q18b"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; + amplican = derive2 { name="amplican"; version="1.22.1"; sha256="1bws4awpjvswzj53zwn9x5ra76ngpqn2h8hlr6y0x7j9wwwqldc7"; depends=[BiocGenerics BiocParallel Biostrings cluster data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; }; + animalcules = derive2 { name="animalcules"; version="1.16.0"; sha256="1z46lpd2zi3b88i27qm48wy4acb2xsjh63zgxhfx2y4bgvr29ni7"; depends=[ape assertthat biomformat caret covr DESeq2 dplyr DT forcats ggplot2 glmnet GUniFrac lattice limma magrittr Matrix MultiAssayExperiment plotly plotROC rentrez reshape2 S4Vectors scales shiny shinyjs SummarizedExperiment tibble tsne umap vegan XML]; }; + annaffy = derive2 { name="annaffy"; version="1.72.0"; sha256="0jy3qk31lb11bixncb2w2hw1ibvik31bfi2l5vyq5wjyxndfyax6"; depends=[AnnotationDbi Biobase BiocManager DBI GO_db]; }; + annmap = derive2 { name="annmap"; version="1.42.0"; sha256="0gilb8yxba1cqi678w9xkq77m8lf3k8dqcldh68cll61xsgihl1v"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; + annotate = derive2 { name="annotate"; version="1.78.0"; sha256="1104r6jdy3nza8329xmq428ljfbfi2xwkd92sw519g0yqryh09vy"; depends=[AnnotationDbi Biobase BiocGenerics DBI httr XML xtable]; }; + annotationTools = derive2 { name="annotationTools"; version="1.74.0"; sha256="0dwbh2h2mp8gy0kwqmkri3q2glnzcj8cn83j1qyh7lk15anc33g8"; depends=[Biobase]; }; + annotatr = derive2 { name="annotatr"; version="1.26.0"; sha256="1vjbk1vpqjxy9wv2a6sc32yyk0bhkbvdx9hl3vs5yjifwdswh2pw"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; + anota = derive2 { name="anota"; version="1.48.0"; sha256="0ic12p1qyfrmh3l1wv7s9yi8sr84crj4nksmcx0lybb6rak9gy0x"; depends=[multtest qvalue]; }; + anota2seq = derive2 { name="anota2seq"; version="1.22.0"; sha256="0pmk45276bl3qppzxlp4jpc8bsvdpca8nzrdl6c4n9r3xhzfpyq0"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; + antiProfiles = derive2 { name="antiProfiles"; version="1.40.0"; sha256="0ix0r36fs6vr0gyryi1j15pcc0hvpynsg9505w95dsn3p4fdnhg8"; depends=[locfit matrixStats]; }; + apComplex = derive2 { name="apComplex"; version="2.66.0"; sha256="057p1bsqqw3r49bsx78prqc4jha468bfx50gpl62giix0cfs007f"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; + apeglm = derive2 { name="apeglm"; version="1.22.1"; sha256="19r1mhpkn3xy6l188c14k9xgn25xqc718bwrlmnz63lak6mp4ws7"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; + appreci8R = derive2 { name="appreci8R"; version="1.18.0"; sha256="1rmwb4kszlk8w985kamwglmn1hnimxvvqbp19mfw5l6f8nns13vi"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; + aroma_light = derive2 { name="aroma.light"; version="3.30.0"; sha256="118yqvbj4ad2b2bik0zi3ir15kxh9fbdi9qqyk52isvcdbv6069p"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; + arrayMvout = derive2 { name="arrayMvout"; version="1.58.0"; sha256="1wdqcfa0h070lky4m2h5k4wg8lg7014y0gk95gip5zags29zjwqb"; depends=[affy affyContam Biobase lumi mdqc parody]; }; + arrayQuality = derive2 { name="arrayQuality"; version="1.78.0"; sha256="0lq59y4pi13z4v1i1ah78xlchxy34x1lplsh0n42wlk88rk0rqxd"; depends=[gridBase hexbin limma marray RColorBrewer]; }; + arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.56.0"; sha256="06plgmgla7hvryqfcid4y35s24r50s39d9f8sjchwbxqciwy72wj"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; + artMS = derive2 { name="artMS"; version="1.18.0"; sha256="1j6r3h3c0la2v6gnfwagzy2zl9fy191ipw9r2p805avxzn2pr4br"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; + atSNP = derive2 { name="atSNP"; version="1.16.0"; sha256="14j8lbry4wpn8izch1nra5npg4qsh49ql4bf21jvvr3gl3qa1g7l"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; + atena = derive2 { name="atena"; version="1.6.0"; sha256="1057mkxrjfnqhb1mydhd7vlb1s8h7n4zc4cl063gw4sgj6mw99ij"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix matrixStats Rsamtools S4Vectors sparseMatrixStats SQUAREM SummarizedExperiment]; }; + attract = derive2 { name="attract"; version="1.52.0"; sha256="1lb6npxm5f82z8278v6fh7k5w8d4z73881iplm3ashc27wiw6sz3"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; + autonomics = derive2 { name="autonomics"; version="1.8.0"; sha256="1gmckbzkb2gpfw0inkqbsfdfj94yfarhla58zqisk3p28554mrcv"; depends=[abind assertive BiocFileCache BiocGenerics bit64 colorspace data_table dplyr edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; }; + awst = derive2 { name="awst"; version="1.8.0"; sha256="0nwpfxfrx9rw4vl02vr311ivmmk96ajlwyhwms642hjv74j2yiji"; depends=[SummarizedExperiment]; }; + bacon = derive2 { name="bacon"; version="1.28.0"; sha256="1h2yh85c6d4j2abdh5l7m6zcxh9i5xzrwwjkwas4nfs48h74z293"; depends=[BiocParallel ellipse ggplot2]; }; + ballgown = derive2 { name="ballgown"; version="2.32.0"; sha256="05lvpvy4gs3vg4ks23prx0mdp730h1m9kpg4al03ah062gyq3ahx"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; + bambu = derive2 { name="bambu"; version="3.2.3"; sha256="1b5zmyj75fjhyn4mb70gdqvxg76fg2z45vns9l0rl66s3p5mhm6d"; depends=[BiocGenerics BiocParallel BSgenome data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; + bamsignals = derive2 { name="bamsignals"; version="1.32.0"; sha256="18058j3fc47qcwvzgpb8mbc7cd1pywzrz3a36iqz93ihzjmymydk"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; + bandle = derive2 { name="bandle"; version="1.4.1"; sha256="0zsrj6jbmyrsw0i69f38rr56qywcp4yy9b2zkhmbm1g1byy5rm3b"; depends=[BH Biobase BiocParallel BiocStyle circlize dplyr ggalluvial ggplot2 ggrepel knitr lbfgs MSnbase plyr pRoloc pRolocdata Rcpp RcppArmadillo rlang robustbase S4Vectors tidyr]; }; + banocc = derive2 { name="banocc"; version="1.24.0"; sha256="0yi70y87isb34jc1wrnz4gr0d0f2zw44555s50j3qdnj1x8cld9y"; depends=[coda mvtnorm rstan stringr]; }; + barcodetrackR = derive2 { name="barcodetrackR"; version="1.8.0"; sha256="155lxqqq2mgrz9i04xvv8y7gh2iacw6qd3mzijzbvrbm605qb3p8"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; + basecallQC = derive2 { name="basecallQC"; version="1.24.0"; sha256="0s29l6n3jlqxydaf1b94jfa68h3gj2844sqbbg68zxjr77zy8qsp"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; + basilisk = derive2 { name="basilisk"; version="1.12.0"; sha256="02ai6ybxhj9q9mshkf17ivvqwsh9lhz7fig5wvr3m7a48hmqqg55"; depends=[basilisk_utils dir_expiry reticulate]; }; + basilisk_utils = derive2 { name="basilisk.utils"; version="1.12.1"; sha256="0g5apvna9wzjlm7g9hdafy44nrg5rp3qh4anwpgwwp2vr0vxn37k"; depends=[dir_expiry]; }; + batchelor = derive2 { name="batchelor"; version="1.16.0"; sha256="1cswij2mdjsdh99rmyh68wscg6h7cs0cff69gnki4gzzjfxy8x3f"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp ResidualMatrix S4Vectors ScaledMatrix scuttle SingleCellExperiment SummarizedExperiment]; }; + bayNorm = derive2 { name="bayNorm"; version="1.18.1"; sha256="1r6vx5h83hk386af1ih7vgk75x06czviqdd9456g8f59d0b20184"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; + bcSeq = derive2 { name="bcSeq"; version="1.22.0"; sha256="0avdp2b58nhxhrf89p8982s006swhbrmbhfjnw2xgnrzp9b6zdan"; depends=[Biostrings Matrix Rcpp]; }; + beachmat = derive2 { name="beachmat"; version="2.16.0"; sha256="0ga9y9npl885jdx7gw5h6lh7fr0z5p7cvcwpz3hvwm4dy235j6gj"; depends=[BiocGenerics DelayedArray Matrix Rcpp]; }; + beadarray = derive2 { name="beadarray"; version="2.50.0"; sha256="0rd41193rq6v4a97ibp0l2bz140nsv91plhn7iim8d8n9hgxqhjp"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; }; + beadarraySNP = derive2 { name="beadarraySNP"; version="1.66.0"; sha256="1pymsm4j3wiyjvgsjb3vhjwdvhfmh91pxdhg4ihrj71pqpif3w9m"; depends=[Biobase quantsmooth]; }; + beer = derive2 { name="beer"; version="1.4.0"; sha256="085jix8mdlh06r93708h28jifrag36vsx5zrjb6a97az5x2jyisy"; depends=[BiocParallel cli edgeR PhIPData progressr rjags SummarizedExperiment]; }; + benchdamic = derive2 { name="benchdamic"; version="1.6.0"; sha256="1agzfb7s97lsl71z16af2hp21ijsb83z8ppn4g3pmfbpyg5rpgqp"; depends=[ALDEx2 ANCOMBC BiocParallel corncob cowplot dearseq DESeq2 edgeR ggdendro ggplot2 ggridges limma lme4 MAST metagenomeSeq MGLM NOISeq phyloseq plyr RColorBrewer reshape2 Seurat SummarizedExperiment tidytext TreeSummarizedExperiment zinbwave]; }; + bgx = derive2 { name="bgx"; version="1.66.0"; sha256="1g6k3ryj8dz17asa4imnrk77z4dk9an5ssrqr17r0g797d5f4qjm"; depends=[affy Biobase gcrma Rcpp]; }; + bigPint = derive2 { name="bigPint"; version="1.15.0"; sha256="1r9gr5f9as09ifagal5k7713h95qjw508cf8ny3j1jmqd24v6xhs"; depends=[DelayedArray dplyr GGally ggplot2 gridExtra hexbin Hmisc htmlwidgets plotly plyr RColorBrewer reshape shiny shinycssloaders shinydashboard stringr SummarizedExperiment tidyr]; }; + bigmelon = derive2 { name="bigmelon"; version="1.26.0"; sha256="1l1ym89qqbq6qx07bm2p8gcl5zd9xh0nbw10fb7s0pfbrkj8xy64"; depends=[Biobase BiocGenerics gdsfmt GEOquery illuminaio methylumi minfi wateRmelon]; }; + bioCancer = derive2 { name="bioCancer"; version="1.28.0"; sha256="0iz8qbbbdi01nrbni3cygzd0jrgj77fz30lvzf3blxgkpk3cbdk2"; depends=[AlgDesign AnnotationDbi Biobase clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier GO_db htmlwidgets httr org_Bt_eg_db org_Hs_eg_db plyr r_import R_methodsS3 R_oo radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; + bioDist = derive2 { name="bioDist"; version="1.72.0"; sha256="1mx4abv7p76qsa0yzj0b4d03xklx09im01bx02lwa1w527gdmfc3"; depends=[Biobase KernSmooth]; }; + bioassayR = derive2 { name="bioassayR"; version="1.38.0"; sha256="0ilwniyrp3m8mi1vmggd17f9g6wdw7a78l2db190w29alzpbfmp6"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; + biobroom = derive2 { name="biobroom"; version="1.32.0"; sha256="0kb6ylq94vywfky0mcrva109darcv361sqvwb19qn92p8vh5199l"; depends=[Biobase broom dplyr tidyr]; }; + biobtreeR = derive2 { name="biobtreeR"; version="1.12.0"; sha256="0cbhlxh0w736695niyjd59fcvplna2f2x2av9k0sd1r3dy6lrcd4"; depends=[httpuv httr jsonlite stringi]; }; + biocGraph = derive2 { name="biocGraph"; version="1.62.0"; sha256="0fnncmi82qb9lkg1zfyps7n3nrw1s3wcqbixh420w53hmdyryryl"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; + biocViews = derive2 { name="biocViews"; version="1.68.1"; sha256="04rzrwxd9n4l3agmbkx03hhcmy2fx049q5n4glld46mvx3vjvc48"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; + biocthis = derive2 { name="biocthis"; version="1.10.1"; sha256="1kmgahjyyrvs475as24yk0jniswjaa507q6zs8zq8jjqa26gy6zj"; depends=[BiocManager fs glue rlang styler usethis]; }; + biodb = derive2 { name="biodb"; version="1.8.0"; sha256="1lcjq1zfarhc7pqqrkqnaycsv2f27n4n8mfvrc3c9ww4lsza555k"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; + biodbChebi = derive2 { name="biodbChebi"; version="1.6.0"; sha256="1c4955rj8g03kjdr8x4296vz8spj957b65dmy8dw2f56ph1wc6aj"; depends=[biodb R6]; }; + biodbExpasy = derive2 { name="biodbExpasy"; version="1.4.0"; sha256="0gwfs6b3ppas26k555pj9yjs949a7zxznbnkr0hn0x927z2lq60r"; depends=[biodb chk R6 stringr]; }; + biodbHmdb = derive2 { name="biodbHmdb"; version="1.6.0"; sha256="0qh8jvkk8n6hxjxwyp351s6v1dl6q5vxlx2ihg6hkswdavx8cgl8"; depends=[biodb R6 Rcpp testthat]; }; + biodbKegg = derive2 { name="biodbKegg"; version="1.6.0"; sha256="037ki0rn46sm56fil5kjy8qfwf6f92jg3d7wbwmccvama4qxwmfr"; depends=[biodb chk lifecycle R6]; }; + biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.6.0"; sha256="1j3ywrg1hilgx2d8a81y46s6x2yb03014i3dma5fjf5r9fhans03"; depends=[biodb lifecycle R6]; }; + biodbMirbase = derive2 { name="biodbMirbase"; version="1.4.0"; sha256="09w4pckjg26333z6j27f1pw1bkxw4793fyk8q04b8ww1fnd7znr2"; depends=[biodb chk R6 stringr]; }; + biodbNcbi = derive2 { name="biodbNcbi"; version="1.4.0"; sha256="0j7gaj847zjpxvgr7hbp0arlxl1p5cszg5vfvw8y047ryiqqf4jd"; depends=[biodb chk R6 XML]; }; + biodbNci = derive2 { name="biodbNci"; version="1.4.0"; sha256="1fz2qcc1v66400aqvwvd1m20i9r0pzagzaqwvn4qja5szsmgl52w"; depends=[biodb chk R6 Rcpp testthat]; }; + biodbUniprot = derive2 { name="biodbUniprot"; version="1.6.0"; sha256="115rird64jjs83yk56s6y5fkn7lgkikfyxad85ygmi4srrychp3v"; depends=[biodb R6]; }; + biomaRt = derive2 { name="biomaRt"; version="2.56.0"; sha256="10cjysqnc1wr0ld3wjl79zv0irrmxb8hf03y63fbwcc43rjcgv07"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; }; + biomformat = derive2 { name="biomformat"; version="1.28.0"; sha256="04kl2432wq6ybdhispvp98ylgyk3kkhmjx1nxdvcal7bfpy2vskk"; depends=[jsonlite Matrix plyr rhdf5]; }; + biosigner = derive2 { name="biosigner"; version="1.28.0"; sha256="19sl75168zv6qqmgsfnhcyw1z0lp0phmky40lsl6bbmy4k2hfw38"; depends=[Biobase e1071 MultiAssayExperiment MultiDataSet randomForest ropls SummarizedExperiment]; }; + biotmle = derive2 { name="biotmle"; version="1.24.0"; sha256="1hjkhwbld8m52lsy2ba6cnp02n0xykaxm9650r5zmzry38dw9nb5"; depends=[assertthat BiocGenerics BiocParallel dplyr drtmle ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; + biovizBase = derive2 { name="biovizBase"; version="1.48.0"; sha256="0na37f2nfavgxd2xhprfb6bv68zm2h6glbkffspc3gsnw1q5h6da"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + biscuiteer = derive2 { name="biscuiteer"; version="1.14.0"; sha256="07nak6mfw9m8ldl336sqgkl3638ibv1hxwd89hwxdrn914wz3hw3"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute IRanges Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + blacksheepr = derive2 { name="blacksheepr"; version="1.14.0"; sha256="1m4d4hr30x3m1x6s5fyjj3vai5mfsgqws2iw9rx9m0pa847hyr8f"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; + blima = derive2 { name="blima"; version="1.34.0"; sha256="1d6v4w0zkkchkjmgg5vlwln9vbc6ibnkbwgj8alc65f1x0myd61h"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; + bluster = derive2 { name="bluster"; version="1.10.0"; sha256="15f103lpl686730vl8g69fhki9iq2ncgr5dm6qm2xc9bq9vh65s9"; depends=[BiocNeighbors BiocParallel cluster igraph Matrix Rcpp S4Vectors]; }; + bnbc = derive2 { name="bnbc"; version="1.22.0"; sha256="0h9x3fadlgpnl71xi2m6s3xqxnj7wydjgn6nxx210lwkn0c6l4c9"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; }; + bnem = derive2 { name="bnem"; version="1.8.0"; sha256="1gjp480niqv6n3xwk5ljpirnj5ncxzq1dbnmxac9n90nqf8vvsq1"; depends=[affy binom Biobase CellNOptR cluster epiNEM flexclust graph limma matrixStats mnem RColorBrewer Rgraphviz rmarkdown snowfall sva vsn]; }; + borealis = derive2 { name="borealis"; version="1.4.0"; sha256="0qnr4rr9jzxmv041qp2j1phppxbir7d15yxsbxlyhppvcipm0qx0"; depends=[Biobase bsseq cowplot doParallel dplyr DSS foreach gamlss gamlss_dist GenomicRanges ggplot2 plyr purrr R_utils rlang snow]; }; + brainflowprobes = derive2 { name="brainflowprobes"; version="1.14.0"; sha256="1v4g08wv2h6j5fr8hsipcw5swlb776ni7aicrsnkv478c822aqmj"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; }; + branchpointer = derive2 { name="branchpointer"; version="1.26.0"; sha256="1ndjs7cgs83n3y4724r9vsdri2pi5zcn1gyp0daq9f2cgp1gkxzh"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; + breakpointR = derive2 { name="breakpointR"; version="1.18.0"; sha256="001n99lilymgqxmpi4v89gw60j1mx13rvppv1ff1pbnk1zcmg53n"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; + brendaDb = derive2 { name="brendaDb"; version="1.14.0"; sha256="1kvb87cg9f3h7hnvxc2zgr9sxxcn0k09gmhp63g7szkqb41vkjyj"; depends=[BiocFileCache BiocParallel crayon dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr]; }; + bsseq = derive2 { name="bsseq"; version="1.36.0"; sha256="1mvhh99h1l6f5rlz0fzqkjpz9hblj2rbv8nx4j9n93g8riz7wsi3"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; + bugsigdbr = derive2 { name="bugsigdbr"; version="1.6.2"; sha256="1fyfvnndwmqvyr3050kbgbdhra86b0mfr1ga025d77j67009gwzx"; depends=[BiocFileCache vroom]; }; + bumphunter = derive2 { name="bumphunter"; version="1.42.0"; sha256="1xghz87702fg9r6n1igygf4ybb8mw8ff0i02qkx9jmm6vmmfhv18"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; + cBioPortalData = derive2 { name="cBioPortalData"; version="2.12.0"; sha256="0dhxjj63ddyjvh2s327336w6711c1a53kw7xiwwaxxmzqncrqik6"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; + cTRAP = derive2 { name="cTRAP"; version="1.18.0"; sha256="0qbzxkjw0l37b0xs2k54va236k56hl652j77yp06d2r451gl3k8h"; depends=[AnnotationDbi AnnotationHub binr cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter htmltools httr limma pbapply purrr qs R_utils readxl reshape2 rhdf5 rlang scales shiny shinycssloaders tibble]; }; + cageminer = derive2 { name="cageminer"; version="1.6.0"; sha256="1qwqdskvs1rbjm0p0r3ijfczd5xjqcwssm5h6rnq7w0f251q1nx2"; depends=[BioNERO GenomeInfoDb GenomicRanges ggbio ggplot2 ggtext IRanges reshape2]; }; + calm = derive2 { name="calm"; version="1.14.0"; sha256="07wnfspw81my0lsbpdxn8qh9flsm28b9w748cswbs42c7gffgjbp"; depends=[mgcv]; }; + canceR = derive2 { name="canceR"; version="1.34.0"; sha256="0agmw839frjz7zf1px7l8b0xk05gj2isgfvl88dwgxkww68vrpbb"; depends=[Biobase circlize Formula geNetClassifier GSEABase httr phenoTest plyr R_methodsS3 R_oo rpart RUnit survival tkrplot]; }; + cancerclass = derive2 { name="cancerclass"; version="1.44.0"; sha256="0bwrzqhfk6vma1pybmn7bs4asr8r2n3g8l2mmw93rqjb8p319shd"; depends=[binom Biobase]; }; + cardelino = derive2 { name="cardelino"; version="1.2.0"; sha256="0ivhqd3da23iy2qklk2nljkjjr943m9r2y1q51fphld33izmv64v"; depends=[combinat GenomeInfoDb GenomicRanges ggplot2 ggtree Matrix matrixStats pheatmap S4Vectors snpStats VariantAnnotation vcfR]; }; + casper = derive2 { name="casper"; version="2.34.0"; sha256="0p436vg2550d6gzgmmag9h4zjx21ph5r136cnjc7pzc0bawkck0p"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; + categoryCompare = derive2 { name="categoryCompare"; version="1.44.0"; sha256="1vdvmwrhrdfmrns3pvwpqzg5266ivmh6jrrwj5c9854i8apz71if"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; + cbaf = derive2 { name="cbaf"; version="1.22.0"; sha256="1w2mgka38135jraqxwywdlpnc5a91g229gb6kj6p49p9r82d2cwa"; depends=[BiocFileCache cBioPortalData genefilter gplots openxlsx RColorBrewer]; }; + cbpManager = derive2 { name="cbpManager"; version="1.8.0"; sha256="1a7jbbzay7jpa123k29zdf22p5rpa9q62cbmxwi2gwdcrysangwk"; depends=[basilisk dplyr DT htmltools jsonlite magrittr markdown plyr rapportools reticulate rintrojs shiny shinyBS shinycssloaders shinydashboard vroom]; }; + ccImpute = derive2 { name="ccImpute"; version="1.2.1"; sha256="05k5k2bis7gf30nx3v6ci55dqhdj35h72jwamnbbdxfqznngqvil"; depends=[BiocParallel matrixStats Rcpp RcppEigen SIMLR]; }; + ccfindR = derive2 { name="ccfindR"; version="1.20.0"; sha256="13m376cq2lp4wa2mlmsisgcp84z21v4bn3clzlfialmavd04djlg"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; + ccmap = derive2 { name="ccmap"; version="1.26.0"; sha256="0nnacvshswa42apslyydfcsz7q09mzr8x24bp6ridgaanjw2h4f7"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; + ccrepe = derive2 { name="ccrepe"; version="1.36.0"; sha256="0iqrz1gqaxv5scpxz0jpz2p35rs21r7rlkl0gxf3xfqs6p9gz5n3"; depends=[infotheo]; }; + ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.12.0"; sha256="1vl5mlg5465i2z00w9f9jmbf7rrh3gxfnyq25x9ylyijb7jajz58"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; + celaref = derive2 { name="celaref"; version="1.18.0"; sha256="0gz2r57r4f0wlland1146fxj020w5md2w37c1kslzg4bywnhsbyg"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; + celda = derive2 { name="celda"; version="1.16.1"; sha256="0nz1xdpb9hp5rsvlq6lwrva53k6130vxxqxjjyvxx0l2944jidgd"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gtable Matrix matrixStats MCMCprecision multipanelfigure plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; }; + cellHTS2 = derive2 { name="cellHTS2"; version="2.64.0"; sha256="0bjx2glka4fs9gj8w2h6sb3fwv8jh56rakd1j678arvcafwcw71w"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; }; + cellbaseR = derive2 { name="cellbaseR"; version="1.24.0"; sha256="1zpbkgqxrljgrpgh62l0w56fvkmlivgi61kws6h8hs6m2g8vkd9n"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; + cellity = derive2 { name="cellity"; version="1.28.0"; sha256="1n9i3vkc01fdv5fxwqnw2zd42wmn3n80ryidzzq874i77nid9mgl"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; + cellmigRation = derive2 { name="cellmigRation"; version="1.8.0"; sha256="1d1js0pvqlc59wpl9mdj0fjw2gx0bjs2p7v2si6rv6j03zz916ka"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; }; + cellscape = derive2 { name="cellscape"; version="1.24.0"; sha256="0g7way8s7xmdx8266vv4597znyh4kkmc1cvxg4i0x3wkv2rq4gac"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; + cellxgenedp = derive2 { name="cellxgenedp"; version="1.4.0"; sha256="0frbajznfdvbjxyqb807wb80i0gi1hj112pfp9hyp85y35rzrl2j"; depends=[curl dplyr DT httr jsonlite rjsoncons shiny]; }; + censcyt = derive2 { name="censcyt"; version="1.8.0"; sha256="0ql7k42z96swaizags3nijx92zjc64whi3c8a26hvjykpdhrzxwv"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; + cfDNAPro = derive2 { name="cfDNAPro"; version="1.6.0"; sha256="05vbwdcgmffzldfk6g882lbfrygw25nhx6fgrbadphdw72q1ynrn"; depends=[BiocGenerics BSgenome_Hsapiens_NCBI_GRCh38 BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr plyranges quantmod rlang Rsamtools stringr tibble]; }; + cfTools = derive2 { name="cfTools"; version="1.0.0"; sha256="1ggvcsnqhf69559a3axpdszm41mvg60138lh2xlnsm0642f648wy"; depends=[basilisk BH GenomicRanges R_utils Rcpp]; }; + cghMCR = derive2 { name="cghMCR"; version="1.58.0"; sha256="1k87ax9wj0s6f2l83276rzykj8v0hgjsb4d8xq5h0a4zk5l5ncny"; depends=[BiocGenerics CNTools DNAcopy limma]; }; + chihaya = derive2 { name="chihaya"; version="1.0.0"; sha256="0607gk2hch3h57ax3c2g3a8247wksnlv4h5bk8a8hpjwy3vw3xvm"; depends=[DelayedArray HDF5Array Matrix Rcpp rhdf5 Rhdf5lib]; }; + chimeraviz = derive2 { name="chimeraviz"; version="1.26.0"; sha256="0y6lpaysicv24d1j4vkxcyc9n0i5kcgpqp8djgwzr4jdrjqshf77"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; + chipenrich = derive2 { name="chipenrich"; version="2.24.0"; sha256="1jvg3nsj9y29iggg2bn67dx5vc7llwzv6bq5zjs3cvyxj0vrlhr5"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; + chipseq = derive2 { name="chipseq"; version="1.50.0"; sha256="0q83c4dm9qbdxlh4cbdzp357fn4sa16d7dqb4s65650pcnjg3a48"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; + chopsticks = derive2 { name="chopsticks"; version="1.66.0"; sha256="107n1vm0jflcbk6m8zn15a06njx84gc82jjqxwm2d3b53l129xbc"; depends=[survival]; }; + chromDraw = derive2 { name="chromDraw"; version="2.30.0"; sha256="0xpabfz4xdrx74yhrnngijqprmzfhq9nzqav2qx5jgcaj3d42v7i"; depends=[GenomicRanges Rcpp]; }; + chromPlot = derive2 { name="chromPlot"; version="1.28.0"; sha256="0pdinyb4m9c4r7hiii421nmpqqgys60x0sr1p24h3ff0alpgdl26"; depends=[biomaRt GenomicRanges]; }; + chromVAR = derive2 { name="chromVAR"; version="1.22.1"; sha256="001133rfcwmf4p3dbif933y9i1mkr3krw38g646wj4ikycszwih4"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; + chromstaR = derive2 { name="chromstaR"; version="1.26.0"; sha256="1qrcmydk080m1rzwbzx2km4vpbahnq5y73mrnpgjjjrxbndz9xz9"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; + chromswitch = derive2 { name="chromswitch"; version="1.22.0"; sha256="007wa8980hkpja33ph3b3fjsjrf91cnwc0a7y4014k8xxmmgfdh7"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; + cicero = derive2 { name="cicero"; version="1.18.0"; sha256="12zdygnwqjla99wzvvxzcmiwmh4v0rmnx4yix02gbj8xl4bxmm51"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; + circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.14.0"; sha256="0gagfm7v5bnnfj1zy6zf4cg91bj8nvv4vm38f3a1s4q2xc8pcvfj"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; + cisPath = derive2 { name="cisPath"; version="1.40.0"; sha256="0raqvpychjqc2bgsnwai5gmz1g2xsqnb3kpndc0na2wc7xqk9psw"; depends=[]; }; + cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.38.0"; sha256="0fbg962x7qlk08gmni7nkwsc2djrk32hsr62kqmgl5n857z29dri"; depends=[Biostrings BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges S4Vectors seqinr stringr]; }; + cleaver = derive2 { name="cleaver"; version="1.38.0"; sha256="10g7gyvnv4x1i8afczhdi1flah7i15spnkadd340l0fvmr9yi4ir"; depends=[Biostrings IRanges S4Vectors]; }; + clevRvis = derive2 { name="clevRvis"; version="1.0.0"; sha256="1s2ha2n06yz3hvxigjxm9xbrqrlw67b56sravkkws1x620a9n0d4"; depends=[colorspace colourpicker cowplot dplyr DT ggiraph ggnewscale ggplot2 ggraph htmlwidgets igraph magrittr patchwork purrr R_utils readr readxl shiny shinycssloaders shinydashboard shinyhelper shinyWidgets tibble]; }; + cliProfiler = derive2 { name="cliProfiler"; version="1.6.0"; sha256="0xrhi38zqr9wsamm38gk6sxms6nzgl28vinhnar2f300nv9195kp"; depends=[Biostrings BSgenome dplyr GenomicRanges ggplot2 rtracklayer S4Vectors]; }; + clippda = derive2 { name="clippda"; version="1.50.0"; sha256="1j1i4bkfsb547vazj9kdkjr32yabbmky05qxszsn82dc89qdyk0f"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; + clipper = derive2 { name="clipper"; version="1.40.0"; sha256="0a2b5lz7lasir0jp2pn99zqjgdyq3ijqjw1as9mr5riwq1a1chq2"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; + cliqueMS = derive2 { name="cliqueMS"; version="1.13.0"; sha256="0fjrz4j67yc05zmdiv0n443sqxkfhrb6k9qprq4jks60dgvr0kpw"; depends=[BH igraph matrixStats MSnbase qlcMatrix Rcpp RcppArmadillo xcms]; }; + clst = derive2 { name="clst"; version="1.48.0"; sha256="078grv8brji6im2irr25kycsrx58p7m7fs16076spk1ac3zjzmsz"; depends=[lattice ROC]; }; + clstutils = derive2 { name="clstutils"; version="1.48.0"; sha256="16sk150yibqvz0nx2n5vivxmd56913myyb2j4jxcf5fg8vxrr1f2"; depends=[ape clst lattice rjson RSQLite]; }; + clustComp = derive2 { name="clustComp"; version="1.28.0"; sha256="0i153cf3qavg6pxs5k8g6jrz2mp26fj1qrywrjwrzaf4h575dwk7"; depends=[sm]; }; + clusterExperiment = derive2 { name="clusterExperiment"; version="2.20.0"; sha256="0h22zh6jpd2wsh6b9rnrmx8897aqlrsnw82kwphx8lay4r1vv706"; depends=[ape BiocGenerics BiocSingular cluster DelayedArray edgeR HDF5Array howmany kernlab limma locfdr Matrix matrixStats mbkmeans NMF phylobase pracma RColorBrewer Rcpp S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; + clusterProfiler = derive2 { name="clusterProfiler"; version="4.8.1"; sha256="1vcqzk5a2y3g2vv5vlpvcpd45xdq6rs5djnrdkww536cwkas9zvy"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim gson magrittr plyr qvalue rlang tidyr yulab_utils]; }; + clusterStab = derive2 { name="clusterStab"; version="1.72.0"; sha256="0imx4jfi2cjriy30cvmskfhkyrjn6s4wj6sw33v9zkqracfxnhzk"; depends=[Biobase]; }; + clustifyr = derive2 { name="clustifyr"; version="1.12.0"; sha256="0i6gs7mvxav8wpj4bsslcgdwlaih2p1f5yfwdgbi3n36b6giirv5"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; + cmapR = derive2 { name="cmapR"; version="1.12.0"; sha256="1pkigc8a0a0cjn0hxirjr50a1zs7ig3crm7rrs2gw0zjvzvkmsgc"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; }; + cn_farms = derive2 { name="cn.farms"; version="1.48.0"; sha256="14vay8fk6irvby8qnygv5vd2jsj8dx70nynhcr8cq90rqyj3ha5b"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; + cn_mops = derive2 { name="cn.mops"; version="1.46.0"; sha256="0z2qn5j5bd20bc21wy1il3x917q4cw1gnyhis11dm529hmfd7ylz"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + cnvGSA = derive2 { name="cnvGSA"; version="1.44.0"; sha256="1nxf35rv4374n4qcsvmjig5y5g7ymwvmbqyflx1fcy0dlyrdx0a6"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; + coGPS = derive2 { name="coGPS"; version="1.44.0"; sha256="1g1v2rcmi4xbhadf6chliayrjcvqy4gkmr25m06x7zlxxjfi4hfg"; depends=[]; }; + coMET = derive2 { name="coMET"; version="1.32.0"; sha256="16yfn9xhjlvik75hl3md51sn3hr4pz615sfiihsk587n33571iyw"; depends=[biomaRt corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; + coMethDMR = derive2 { name="coMethDMR"; version="1.4.0"; sha256="0jkayx2aw3z4yjkiyz9c3bws98vh9n6qpg9iryrzs3s3hi3xzm8l"; depends=[AnnotationHub BiocParallel bumphunter ExperimentHub GenomicRanges IRanges lmerTest]; }; + coRdon = derive2 { name="coRdon"; version="1.18.0"; sha256="1qisxv0i05dcsf9nxgbwhswzxrckrabz5jzh78fnh7x9hh7rsd62"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; + codelink = derive2 { name="codelink"; version="1.68.0"; sha256="0gsdkzdgi4l34i9jk4b2h10rniwm0w0h7m5p1i8v20j7dlnihhs4"; depends=[annotate Biobase BiocGenerics limma]; }; + cogena = derive2 { name="cogena"; version="1.34.0"; sha256="1gfkbj3b7j1hd0y0s5fp00hq1lllxhpirjaxphhhaj8vhvh5xpy8"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; + cogeqc = derive2 { name="cogeqc"; version="1.4.0"; sha256="1v6vxcwwh6v4xwka1h0pyp7i7z7xs2k06qbx8b3hy1v9v2bkqd50"; depends=[Biostrings ggbeeswarm ggplot2 ggtree igraph jsonlite patchwork reshape2 rlang scales]; }; + cola = derive2 { name="cola"; version="2.6.0"; sha256="104l0dnav1z9kk2r1a0hyqcm230cgpkcap4dng9a0r6vsd5bvz8k"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel doRNG eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; + comapr = derive2 { name="comapr"; version="1.4.0"; sha256="0w4jajd088bxf664ajs5cfgq14hn5xfdsydsrsnb97jv8jhjxc19"; depends=[BiocParallel circlize dplyr foreach GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz IRanges Matrix plotly plyr RColorBrewer reshape2 rlang S4Vectors scales SummarizedExperiment tidyr]; }; + combi = derive2 { name="combi"; version="1.12.0"; sha256="10lwxh5byr4il17fr6cmg48fikx3l6n1sm07kgsfc1dh1z7jgk03"; depends=[alabama BB Biobase cobs DBI ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; + compEpiTools = derive2 { name="compEpiTools"; version="1.34.1"; sha256="13v6qysss04v4lbabjbzvr0hm2cfl2f9rid8s7hgkrcggq3dv5mk"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; + compartmap = derive2 { name="compartmap"; version="1.18.0"; sha256="0lvgwnp5cgn96m9y4snpczfbfs72lxbaa36lnmwa7j07jy4s9108"; depends=[BiocSingular DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array Matrix RaggedExperiment reshape2 RMTstat rtracklayer scales SummarizedExperiment]; }; + compcodeR = derive2 { name="compcodeR"; version="1.36.0"; sha256="0d3an6rr71vmk46z11gnm19zcv80fn27gscz2zrcqqmxng2pxnrp"; depends=[ape caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS matrixStats modeest phylolm ROCR sm stringr vioplot]; }; + concordexR = derive2 { name="concordexR"; version="1.0.0"; sha256="1n5wa3cgbly5k9jzrdv4zm3k1aqzm1h5hmf5dlvri9l14skiz1p3"; depends=[BiocParallel cli DelayedArray ggplot2 Matrix pheatmap rlang scales]; }; + condiments = derive2 { name="condiments"; version="1.8.0"; sha256="1nn746a8jvi45zpcpdw03win26zijr5wgq1q7b2ank6rlvb7alj3"; depends=[BiocParallel distinct dplyr Ecume igraph magrittr matrixStats mgcv pbapply RANN SingleCellExperiment slingshot SummarizedExperiment TrajectoryUtils]; }; + consICA = derive2 { name="consICA"; version="1.2.0"; sha256="1sz5p9rvmzwxp3qnnl22zn2h9pma96ybgn5zp0c1baibrijy3w5k"; depends=[BiocParallel fastICA GO_db graph org_Hs_eg_db pheatmap sm SummarizedExperiment survival topGO]; }; + consensus = derive2 { name="consensus"; version="1.18.0"; sha256="0y6nlxqkg3skh7fayk1ibys0p7nppg39859sws5prbr1gc4pkyj1"; depends=[gplots matrixStats RColorBrewer]; }; + consensusDE = derive2 { name="consensusDE"; version="1.18.0"; sha256="1k3k08mavysdfpc7fzhisq9idphscmk9zvmsqipwixkz6n8g6p8s"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; + consensusOV = derive2 { name="consensusOV"; version="1.22.0"; sha256="1df82gjnj2myv571q08y2sadgyhcvzl9fnsjrqn6a1grjqmkvax1"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; + consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.28.0"; sha256="0nk0ykwkyilcj464nw0vp2zbaj8b1hfpgbj83myn548rp959im1g"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; + contiBAIT = derive2 { name="contiBAIT"; version="1.28.0"; sha256="1flk77zilm54jq3d454ihkvqnsqxmxn8wybrzgq5qy9k0a10x3ic"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; + conumee = derive2 { name="conumee"; version="1.34.0"; sha256="1ixfwjkd9q79zpinbgn60krdmqhdb042bxnzifb9h351dlhl496r"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; + convert = derive2 { name="convert"; version="1.76.0"; sha256="0b5q7va7wss3g3z17fp82z7559fmh25sn8bmmnvx9dlcdica51jj"; depends=[Biobase limma marray]; }; + copa = derive2 { name="copa"; version="1.68.0"; sha256="1dmbsns1b6kgd59gnjjm2ybg9fhd67ybba6bfaz58z7iw6x98jlz"; depends=[Biobase]; }; + corral = derive2 { name="corral"; version="1.10.0"; sha256="03jp84rlj0a6rs4ivp06x0p3rfgk6x8d4anp6jdkd4bp9rg52d73"; depends=[ggplot2 ggthemes gridExtra irlba Matrix MultiAssayExperiment pals reshape2 SingleCellExperiment SummarizedExperiment transport]; }; + coseq = derive2 { name="coseq"; version="1.24.0"; sha256="1i2p0mk95z8xvrqbqjg2bc3y48w34nl1rvch9bwjls52z92wk0jj"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; + cosmiq = derive2 { name="cosmiq"; version="1.34.0"; sha256="1l9y6zhhkd3mskq219ndqxbwvk5bg3k27q8wi18yjizv3spqyf2x"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; + cosmosR = derive2 { name="cosmosR"; version="1.8.0"; sha256="185wp3akzxx62pszr45vlkbivvwbfcm4ai4d6j75rwgas89yzmwm"; depends=[CARNIVAL dorothea dplyr GSEABase igraph progress purrr rlang stringr visNetwork]; }; + countsimQC = derive2 { name="countsimQC"; version="1.18.0"; sha256="00b09sky4widp78vnawnvm1m0n90i45df0l41rrqj9h6kcfcsghc"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 ragg randtests rmarkdown SummarizedExperiment tidyr]; }; + covEB = derive2 { name="covEB"; version="1.26.0"; sha256="1sksnxl0a8n50bknnhpa95ap07lhgib422ixawqdmqm102w7rwzn"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; + covRNA = derive2 { name="covRNA"; version="1.26.0"; sha256="1mb647nqih08i9ik24ngp3mj5il253n7sixd1g22zqm0qmhp1r5r"; depends=[ade4 Biobase genefilter]; }; + cpvSNP = derive2 { name="cpvSNP"; version="1.32.0"; sha256="0pvwnd8jgc40acgqa8sy928nl89pk0ybzd86awmbzmhbwzmsmjai"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; + cqn = derive2 { name="cqn"; version="1.46.0"; sha256="19flrq8j9rn806akk7vv8zmg62hi28804752f7mphl54hc49f0md"; depends=[mclust nor1mix preprocessCore quantreg]; }; + crisprBase = derive2 { name="crisprBase"; version="1.4.0"; sha256="1xc2pafab5xxwj2m7rz0f1zwwd5rsyigjink3sf1fdgaazwxrf8z"; depends=[BiocGenerics Biostrings GenomicRanges IRanges S4Vectors stringr]; }; + crisprBowtie = derive2 { name="crisprBowtie"; version="1.4.0"; sha256="1isqnnxjdf4p25s8p4sbs1s6mn99rj7k5a1jjsxq43fnvvkx7fh1"; depends=[BiocGenerics Biostrings BSgenome crisprBase GenomeInfoDb GenomicRanges IRanges Rbowtie readr stringr]; }; + crisprBwa = derive2 { name="crisprBwa"; version="1.4.0"; sha256="1kvrjvh158qsi3gdrqskvhh0gbmmi2cvx5x2r7pfb4yd28rzp2r4"; depends=[BiocGenerics BSgenome crisprBase GenomeInfoDb Rbwa readr stringr]; }; + crisprDesign = derive2 { name="crisprDesign"; version="1.2.0"; sha256="1ljfb2qxzapdzp59aaj5cizwv1malszv0l60wci38yy9jqd6ryv8"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome crisprBase crisprBowtie crisprScore GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix MatrixGenerics rtracklayer S4Vectors VariantAnnotation]; }; + crisprScore = derive2 { name="crisprScore"; version="1.4.0"; sha256="1bg5c6gq35pc1ja2jk6zys1s1a940sbq2hwmbgbv0zp5xk9b4j4c"; depends=[basilisk basilisk_utils BiocGenerics Biostrings crisprScoreData IRanges randomForest reticulate stringr XVector]; }; + crisprVerse = derive2 { name="crisprVerse"; version="1.2.0"; sha256="08bnvd0i0bjvzbsskd29vbpm427mgj9a03zxzgd4f2hhqsj3b9xa"; depends=[BiocManager cli crisprBase crisprBowtie crisprDesign crisprScore crisprScoreData crisprViz rlang]; }; + crisprViz = derive2 { name="crisprViz"; version="1.2.0"; sha256="08fhnkw6ca8h6pzsfr7lr8bl97w8ljiz7bgvlmmmmlzygvgbknx9"; depends=[BiocGenerics Biostrings BSgenome crisprBase crisprDesign GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges S4Vectors]; }; + crisprseekplus = derive2 { name="crisprseekplus"; version="1.26.0"; sha256="1ccz944jwlcnflrdh1aamfc5b03n6pys65b13f049f0x214vqg68"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; + crlmm = derive2 { name="crlmm"; version="1.58.0"; sha256="02728x2dxs19s2qnb99jd9db1c35ml61dsw5rxmbr5p0mvnwl9wj"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; }; + crossmeta = derive2 { name="crossmeta"; version="1.26.0"; sha256="0xq1zky9z5aj1dk1mqf1qyxdv6614rxc5ywwkfyrciz68m8n0cxn"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager data_table DBI DT edgeR fdrtool GEOquery limma matrixStats metaMA miniUI oligo RCurl reader readxl RSQLite shiny shinyBS shinyjs shinypanel shinyWidgets stringr sva tibble XML]; }; + csaw = derive2 { name="csaw"; version="1.34.0"; sha256="1mybz738mg0yp2vigl71nwzda3qjqpyfqjsm56pfcv84q5kj90s8"; depends=[BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicRanges IRanges limma Matrix metapod Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; + csdR = derive2 { name="csdR"; version="1.6.0"; sha256="0c8sbb9n5m92qnlbrvykqqqc0vmym64194w8f6si8wwf1fh8g9hv"; depends=[glue matrixStats Rcpp RhpcBLASctl WGCNA]; }; + ctc = derive2 { name="ctc"; version="1.74.0"; sha256="0ph22v1an2havnh9sm7hms0q2pq4fjad2cm4dffiy3344cv70sn1"; depends=[amap]; }; + ctsGE = derive2 { name="ctsGE"; version="1.26.0"; sha256="0b1jal31799jj7rhzzpkl1jxkk74a97p98by3ljy8pws07jgvb8j"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; + cummeRbund = derive2 { name="cummeRbund"; version="2.42.0"; sha256="1xin1azby96xxp4yyd4wc3rfcjc2g9p01ksfd89bk2vxcclccqxn"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; + customCMPdb = derive2 { name="customCMPdb"; version="1.10.0"; sha256="0rg8i4msgapblzdxsc26sj4zwng282v89acanikzc59rw275sblm"; depends=[AnnotationHub BiocFileCache ChemmineR rappdirs RSQLite XML]; }; + customProDB = derive2 { name="customProDB"; version="1.40.0"; sha256="05k3ibdmh4av9g490jxw0rvpb9jydnwnvfy2q4269zfr5vr9yy0y"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; + cyanoFilter = derive2 { name="cyanoFilter"; version="1.8.0"; sha256="01pqivhl6m4wp116y1sfii4csg7fzxqwa1im8j4w4p08cdkh9191"; depends=[Biobase cytometree flowClust flowCore flowDensity GGally ggplot2 mrfDepth]; }; + cycle = derive2 { name="cycle"; version="1.54.0"; sha256="1d8a3w3pwf26mb2kh3np4p34sxz5hazizlq2znrczn9w7vdqhj2y"; depends=[Biobase Mfuzz]; }; + cydar = derive2 { name="cydar"; version="1.24.0"; sha256="14gkkc3q66ifrada2c388a6ys19pm951lkx9g08sqi5fz6bl3xhj"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; + cytoKernel = derive2 { name="cytoKernel"; version="1.6.0"; sha256="10qhzcpacfa1w99fb03j6zz1sb85613q0ckvf3c4v4qkr0fz1mpn"; depends=[ashr BiocParallel circlize ComplexHeatmap data_table dplyr magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; + cytoMEM = derive2 { name="cytoMEM"; version="1.4.0"; sha256="0rqnin7asspszpcfrc76raicdbazrvbdynalbdd38spa8178fvqm"; depends=[flowCore gplots matrixStats]; }; + cytofQC = derive2 { name="cytofQC"; version="1.0.0"; sha256="0isfngah9bziwfbrlqqcg7h57cwpphxwv52xvgjvd970ch9bl598"; depends=[CATALYST e1071 EZtune flowCore gbm ggplot2 hrbrthemes matrixStats randomForest rmarkdown S4Vectors SingleCellExperiment ssc SummarizedExperiment]; }; + cytolib = derive2 { name="cytolib"; version="2.12.0"; sha256="0r58960jhq44qs6p0l0kd4iazflxdar7sc7m2xa7dwwl9zh5zm42"; depends=[BH Rhdf5lib RProtoBufLib]; }; + cytomapper = derive2 { name="cytomapper"; version="1.12.0"; sha256="1z3ic6w4pkysw546kh0ybwyj13wdd1a7ixa83ws200aydryybjmc"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats nnls raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SpatialExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; + cytoviewer = derive2 { name="cytoviewer"; version="1.0.0"; sha256="0i1rklm9s9vlk8mbnzsvm2837rk44sn9zy1pch983q12cjg63iw6"; depends=[archive colourpicker cytomapper EBImage RColorBrewer S4Vectors shiny shinycssloaders shinydashboard SingleCellExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; + dStruct = derive2 { name="dStruct"; version="1.6.0"; sha256="1bcmv30gj2rfzgwk9ncpbn5z0ra5jxpm94npw9nd6lz8gf6qmm74"; depends=[ggplot2 IRanges purrr reshape2 rlang S4Vectors zoo]; }; + daMA = derive2 { name="daMA"; version="1.72.0"; sha256="0z4y57hna312pkhkchair8calm7wl40rx8lcm8i6h1789hba063d"; depends=[MASS]; }; + dada2 = derive2 { name="dada2"; version="1.28.0"; sha256="1vxy2106rzygy0dr38wmw84zrqp9gsvaphliikdmhx0n2gv6xhd1"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; + dagLogo = derive2 { name="dagLogo"; version="1.38.0"; sha256="02s1wnbzm0ggn5394s0cbkcs6fi7a82lg6f2n5ffjf56qyw5rnw7"; depends=[BiocGenerics biomaRt Biostrings httr motifStack pheatmap UniProt_ws]; }; + dasper = derive2 { name="dasper"; version="1.9.0"; sha256="095ldl40cay5n8lkp8y69lbmflhnbwm1b075s4zgpagn81awp0cn"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyranges readr reticulate rtracklayer S4Vectors stringr SummarizedExperiment tidyr]; }; + dcGSA = derive2 { name="dcGSA"; version="1.28.0"; sha256="0ms58r8bmn0cg0f9d665clwmz0vbc7h9yajray3a3dn6dmz9rpjn"; depends=[BiocParallel Matrix]; }; + dcanr = derive2 { name="dcanr"; version="1.16.0"; sha256="0r4xhl5z75pfaa7qgj5iaxx35130x80sxx6bpqnd3cg11726wwv9"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; + dce = derive2 { name="dce"; version="1.7.0"; sha256="05lai4dmmac4gl6m7mgxllpqrf6nk49h38j9p7lid5v7wv7dmbf5"; depends=[assertthat dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger magrittr MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang shadowtext tidygraph tidyverse]; }; + ddCt = derive2 { name="ddCt"; version="1.56.0"; sha256="1sz2r87mk0s16i8c0hag8b53s5hxj1zkr1p1m8vwj060qm0wjiav"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; + ddPCRclust = derive2 { name="ddPCRclust"; version="1.20.0"; sha256="0ljbx8jf2v5pkvssp6psfhabk2v264xb9h3y5ny3rxm9zk3q3890"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; + dearseq = derive2 { name="dearseq"; version="1.12.1"; sha256="12ld1f3892ag1a3lmkwjlkk6pd79ibykg8jrmddx2x33k23cv67g"; depends=[CompQuadForm dplyr ggplot2 KernSmooth magrittr matrixStats patchwork pbapply reshape2 rlang scattermore statmod survey tibble viridisLite]; }; + debCAM = derive2 { name="debCAM"; version="1.18.0"; sha256="11vqfkyd3fklc8fhn850kklph8x4pmwclb9xbqji4i21222m89hh"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; + debrowser = derive2 { name="debrowser"; version="1.28.0"; sha256="1vhh1ghc3vgm87l2l3gar8qkladlz50p4fvxcmxrn5ygjd3gap8j"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; + decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.16.0"; sha256="028sczy1d108i05ymr1wpj6jdrcds476wbmmc7rzzflzyg4aix75"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + decontam = derive2 { name="decontam"; version="1.20.0"; sha256="08niwixy4m6gqmazisxzbbla9nsxicpa685jy3r6knapwaznvcb2"; depends=[ggplot2 reshape2]; }; + deconvR = derive2 { name="deconvR"; version="1.6.0"; sha256="1r5js5prwy1libnf1g1a4pdi15pj216bb8ajhzii3symn5r0cdj9"; depends=[assertthat BiocGenerics data_table dplyr e1071 foreach GenomicRanges IRanges magrittr MASS matrixStats methylKit minfi nnls quadprog rsq S4Vectors tidyr]; }; + decoupleR = derive2 { name="decoupleR"; version="2.6.0"; sha256="012d76jwgg6fwfjc00zdws59y6jbj0grzd4lgjrqs2afp2ycmh9s"; depends=[broom dplyr magrittr Matrix purrr rlang stringr tibble tidyr tidyselect withr]; }; + deepSNV = derive2 { name="deepSNV"; version="1.46.0"; sha256="11cnyy3hyn8akhmax25293mx2blcs8ba5vfax6mx6hjhb577hkwb"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; + deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.14.0"; sha256="1xdi1znysn3gpkwr41psjfzyblhq8r0vab2qgjl2slznw39kla2x"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment tictoc]; }; + deltaGseg = derive2 { name="deltaGseg"; version="1.40.0"; sha256="0wxf5sbd13yyyx5in4x153pd2zxp1r0k0r9k841x87shjqphy595"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; + demuxmix = derive2 { name="demuxmix"; version="1.2.0"; sha256="0hxxcl1kpxawi30zzsi68jqs4yhl67k6vw24f1n9lzji1izwjxl8"; depends=[ggplot2 gridExtra MASS Matrix]; }; + densvis = derive2 { name="densvis"; version="1.10.1"; sha256="1291gp5wj9c47y291c1hqb12dj2zh6xrf0g38kllspqg9885cs54"; depends=[assertthat basilisk irlba Rcpp reticulate]; }; + derfinder = derive2 { name="derfinder"; version="1.34.0"; sha256="1gb65hk26ffn0njsgwgk43z9i9bcvx89pz5m9x951c2a07c1xrcw"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; + derfinderHelper = derive2 { name="derfinderHelper"; version="1.34.0"; sha256="0ww4lvwmm8rf44wgksg98bqh7zlm503c4gc8dwilb1w0dz2k7qll"; depends=[IRanges Matrix S4Vectors]; }; + derfinderPlot = derive2 { name="derfinderPlot"; version="1.34.0"; sha256="1zl067pwnv16s5lhf1qdg4nzxfdc3absk5jwpzzr09ss22wkyzb7"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; + destiny = derive2 { name="destiny"; version="3.14.0"; sha256="0hc85dq68h7dy5jcflpjj05231ny7na9i4lksfsw89jhmxgzhacd"; depends=[Biobase BiocGenerics ggplot_multistats ggplot2 ggthemes irlba knn_covertree Matrix pcaMethods proxy Rcpp RcppEigen RcppHNSW RSpectra scales scatterplot3d SingleCellExperiment smoother SummarizedExperiment tidyr tidyselect VIM]; }; + diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.82.0"; sha256="0wazhx9hghjd30h9k8l4ag7lpnijs6hlwyln9jvik5ywh3r60394"; depends=[minpack_lm]; }; + diffHic = derive2 { name="diffHic"; version="1.32.0"; sha256="0x86s7cppxmlq43mpdkn7va5by6qkd280ik6xgkpnbn243f84jpv"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; + diffUTR = derive2 { name="diffUTR"; version="1.8.0"; sha256="1n1lzflmzxj6wdsf8nhkv6dlsx19imc44lnminlw11lbwnzrk0yy"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; }; + diffcoexp = derive2 { name="diffcoexp"; version="1.20.0"; sha256="1jvm3f6xdmdkkkjylpa00fb7110yrb5as63ilhz7jp6g8wc683z4"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; + diffcyt = derive2 { name="diffcyt"; version="1.20.0"; sha256="1vsn9z06vmfw6741x7dri3d9wh4rqhzak9r506y3c3h2gjjwilv1"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; + diffuStats = derive2 { name="diffuStats"; version="1.20.0"; sha256="14228dmykyrj8v3zgwh82xj0i5dhr6mkj181rv3pfpcmcgwrmbgf"; depends=[checkmate expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; + diggit = derive2 { name="diggit"; version="1.32.0"; sha256="1xkvi8gbsdinr7j8qr1rc4rp8ynim1zd1i876gxsn1887avzzq19"; depends=[Biobase ks viper]; }; + dir_expiry = derive2 { name="dir.expiry"; version="1.8.0"; sha256="1vccq28734s7zk7pc7i9zq4rzbi373xqqvgkzamjpii36phkdmlw"; depends=[filelock]; }; + discordant = derive2 { name="discordant"; version="1.24.0"; sha256="1c3qfj6yx6pnpjzm6lgs4ark3dlw21amkxcnrzqi4qxdl2r5jkgn"; depends=[Biobase biwt dplyr gtools MASS Rcpp]; }; + distinct = derive2 { name="distinct"; version="1.12.2"; sha256="1yzsnjcwh4l8iy7hx9zhgx2kxdfvszc60dahgd1sx6mmybcg89zv"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo Rfast scater SingleCellExperiment SummarizedExperiment]; }; + dittoSeq = derive2 { name="dittoSeq"; version="1.12.0"; sha256="0g5xxzd2xvh0m1fmyzzriwnrq1ckcmb95h9yl60h5w3c3ph22438"; depends=[colorspace cowplot ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + divergence = derive2 { name="divergence"; version="1.16.0"; sha256="1h212zjav0m4739mrshnp3ghnq0cr66knv5ihn6fy3grf00i1v9k"; depends=[SummarizedExperiment]; }; + dks = derive2 { name="dks"; version="1.46.0"; sha256="1cbqcg7fk27y8y1hbfwz9vj6sgvygnmg855h9swlr2mq5kaka5ig"; depends=[cubature]; }; + dmrseq = derive2 { name="dmrseq"; version="1.20.0"; sha256="1xj23dqvmxi1sn4qn4zwvn9ggv128kr3gxmd7906463s9ap8qjja"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; + doppelgangR = derive2 { name="doppelgangR"; version="1.27.0"; sha256="1abjizqyqxwf8m97yj2lq4mlsw3jxwqdpa57c8bsbljih9i8w75h"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; + doseR = derive2 { name="doseR"; version="1.16.0"; sha256="1as6sinbry3ai8wlzrdpr8zfd4c9cyqlbwg0hc4ii4lvnykbm5hz"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; }; + doubletrouble = derive2 { name="doubletrouble"; version="1.0.0"; sha256="0w82sgf7c86v3ir771a332x0ab09z517jvp43xx2chsbwahzyk1d"; depends=[Biostrings GenomicRanges ggplot2 mclust MSA2dist syntenet]; }; + dpeak = derive2 { name="dpeak"; version="1.12.0"; sha256="1fx2rrcqmjckk5kk3mfa56b1393b2c8sf566q95d8zmlsvkl03w5"; depends=[BSgenome IRanges MASS Rcpp]; }; + drawProteins = derive2 { name="drawProteins"; version="1.20.0"; sha256="15vxi4a8bm65s6ba7kyyr64l4k7frwa6l06537423ac245j7nkwl"; depends=[dplyr ggplot2 httr readr tidyr]; }; + drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.8.0"; sha256="0ll9fdfnvr8rbm54z1jf5w6b3dizm8fhzladnlc6xx5ysldasci3"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; }; + dupRadar = derive2 { name="dupRadar"; version="1.30.0"; sha256="0gda6nx42xsskzpn55yj877703zmn1al5qrpjb0xyiw0ayjdg6d2"; depends=[KernSmooth Rsubread]; }; + dyebias = derive2 { name="dyebias"; version="1.60.0"; sha256="1l4sk2hzghr0b983ki2jzr9myyy62pcz104vblql48jg6pxv28gk"; depends=[Biobase marray]; }; + easier = derive2 { name="easier"; version="1.5.0"; sha256="1zim7zjaa4skvqbg9xvlq6644a5wpqzbvq4avafvfbp59hl6sv3s"; depends=[BiocParallel coin DESeq2 dorothea dplyr easierData ggplot2 ggpubr ggrepel matrixStats progeny quantiseqr reshape2 rlang ROCR rstatix]; }; + easyRNASeq = derive2 { name="easyRNASeq"; version="2.36.0"; sha256="1cax4k6rppk0kxwannf0ar17jx1pa7lp52a398skqkhy87s29dbp"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; + easyreporting = derive2 { name="easyreporting"; version="1.12.0"; sha256="0xpxqmal1b6pr0i9kppvjwfkaz36w04bmf6x2cgaip0v2g256mrh"; depends=[rlang rmarkdown shiny]; }; + ecolitk = derive2 { name="ecolitk"; version="1.72.0"; sha256="08ykgqc8f8v927q8r2bnj16fw2sm36p2lcirsiy4425hxmz8yfjz"; depends=[Biobase]; }; + edge = derive2 { name="edge"; version="2.32.0"; sha256="1l8icn5xzyhx5pis33198wbaq7bbkbfxnsmzvymx6fha4p5qs6yb"; depends=[Biobase MASS qvalue snm sva]; }; + edgeR = derive2 { name="edgeR"; version="3.42.2"; sha256="1vss3n2m12vf6wcspfly394b8g3mfbwkkw8ihz8nqpc2iqs399rj"; depends=[limma locfit Rcpp]; }; + eds = derive2 { name="eds"; version="1.2.0"; sha256="0yhrh076m3ljhafdzan5ym60m8hyb29hwzfi0zzrxjbbjiz673q0"; depends=[Matrix Rcpp]; }; + eegc = derive2 { name="eegc"; version="1.26.0"; sha256="0m67zjsq2xzk292rp0hdlj8lbfgci2dsdb5hmn4b591fqawwsqbb"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; + eiR = derive2 { name="eiR"; version="1.40.0"; sha256="0f10da7wiyrqzmdah2pmv0gxy5i6yvsfbyc3r71s4zgqj5nvf2wp"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; }; + eisaR = derive2 { name="eisaR"; version="1.12.0"; sha256="0g2zg8y0mdn0nn1jw5dlvm2245913fmw7lbgymkwlihf5xm8s345"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; + enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.6.1"; sha256="081b6d8m4kq4bsrxs8pwg58lwrifd2cc2ymkqcv491xnfabr3ais"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr Rcpp rtracklayer S4Vectors]; }; + enrichTF = derive2 { name="enrichTF"; version="1.16.0"; sha256="15k7vy02270ygl354wxy7dsx4w2qx6bidqyhsb1dcamhy2z11403"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; + enrichplot = derive2 { name="enrichplot"; version="1.20.0"; sha256="10vmlw58hgzcpv2hlxk9ircza889vs9z01z575633qj0ivsczh0z"; depends=[aplot DOSE ggnewscale ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 rlang scatterpie shadowtext yulab_utils]; }; + ensemblVEP = derive2 { name="ensemblVEP"; version="1.42.0"; sha256="0s743p10cf1vjw8b44qy6cwx77ykkq931sil1cv9km278zpkp3b5"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; + ensembldb = derive2 { name="ensembldb"; version="2.24.0"; sha256="0rl5ix755055i95y5xfb4zv5gih2gkqwqia1r1b3yx12z5ybvkc6"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; + epiNEM = derive2 { name="epiNEM"; version="1.24.0"; sha256="1c13mrw9if1v3gx8c662p48prx5hy8ndgs35ma4dv93kkgqxg9i2"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; + epialleleR = derive2 { name="epialleleR"; version="1.8.0"; sha256="1addbbxifj5ksrnxn7i3kfc1bywpd9zkxl4ky6hbswpjygv4b9gp"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; }; + epidecodeR = derive2 { name="epidecodeR"; version="1.8.0"; sha256="19422k6v9xc1gq3hw2mbqcgp3jdllmkjrcqsac0b02i4ly4yad8h"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; + epigenomix = derive2 { name="epigenomix"; version="1.40.0"; sha256="1mgxc3bsgh93ij8qpa4mr4pcc3p0avzhwyk68hzc5k48c7f9n782"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; + epigraHMM = derive2 { name="epigraHMM"; version="1.8.2"; sha256="1gw13i0sjvd1a5krfnk9vgp55mhq6dlinpprpqj7rg1gp5h2d76w"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; + epimutacions = derive2 { name="epimutacions"; version="1.4.0"; sha256="079mkdri07zhx41gd78x88kq0isj6lahijbxr6whc8p5g8qk6p3f"; depends=[AnnotationDbi AnnotationHub BiocGenerics BiocParallel biomaRt bumphunter ensembldb epimutacionsData ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra Gviz Homo_sapiens IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges isotree matrixStats minfi purrr reshape2 robustbase rtracklayer S4Vectors SummarizedExperiment tibble TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + epistack = derive2 { name="epistack"; version="1.6.0"; sha256="1rnc7vnm6n6f88zncag4x3m2z8nn28r8mjh9cdgr2i2p177cipav"; depends=[BiocGenerics GenomicRanges IRanges plotrix S4Vectors SummarizedExperiment]; }; + epistasisGA = derive2 { name="epistasisGA"; version="1.2.1"; sha256="1rs3m4jc9lmwzxg20mknbdrlpnrm0z54ldi5xywmpzyf382r8lka"; depends=[batchtools BH bigmemory BiocParallel data_table ggplot2 igraph matrixStats qgraph Rcpp RcppArmadillo survival]; }; + epivizr = derive2 { name="epivizr"; version="2.30.0"; sha256="1y6nmh1q0ajjbar3ixwkpky545pccwmqqkpfcph1dsvbkb1dxm4l"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + epivizrChart = derive2 { name="epivizrChart"; version="1.22.0"; sha256="08rgz3izbr74s3kbx2vwxi3v2kbaq8h7vray9amzd9hbixys97x0"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; + epivizrData = derive2 { name="epivizrData"; version="1.28.0"; sha256="0fyxwxzzj59dm6268q4hlkpd5pfx9c6vg1iz0zr7ydngknxjxrfi"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; + epivizrServer = derive2 { name="epivizrServer"; version="1.28.0"; sha256="1xk3k39wwjzvff9i156y9zr4jfnwdap0k24hf14ih48yl472v4g9"; depends=[httpuv mime R6 rjson]; }; + epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.28.0"; sha256="013fw3qm1zl4xfvlqk07a2v853xb82d1n4c6vigk5n8b4gjb3603"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; + erccdashboard = derive2 { name="erccdashboard"; version="1.34.0"; sha256="0mfmrfrnwc7vr7c3p3b2qxb084lbhgkp3jq2d22bhm2gaj45b1m7"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; + erma = derive2 { name="erma"; version="1.16.0"; sha256="14rgj8g9x248p2cc86aqn289qamsd91d6fnydi5d34q605ph73yj"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; + esATAC = derive2 { name="esATAC"; version="1.22.0"; sha256="1hyg4cz3zqxp6mh55kazpmxq64q83fhpisqzqamr0vfsb7c4jjym"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; + escape = derive2 { name="escape"; version="1.10.0"; sha256="1krsaj2lx37za83kv7383zl4cpz0i3sjxx67ysljmvmf47kk5b5g"; depends=[BiocParallel broom data_table dplyr ggplot2 ggridges GSEABase GSVA Matrix MatrixGenerics msigdbr patchwork reshape2 rlang SingleCellExperiment stringr SummarizedExperiment UCell]; }; + escheR = derive2 { name="escheR"; version="1.0.0"; sha256="0nplryxpqrz3fygywdkby6681gjgqbc506l78vfxyjk5x58d3dkx"; depends=[ggplot2 rlang SpatialExperiment spatialLIBD SummarizedExperiment]; }; + esetVis = derive2 { name="esetVis"; version="1.26.1"; sha256="1ffbjh9x0h8az6nfin679hn86j7hgphv8lk2sa59plfz0d6bwpa5"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; + eudysbiome = derive2 { name="eudysbiome"; version="1.30.0"; sha256="1svq1x3w2kkhhh78mzrx1xwz3acpcbm1dkk6k22gnd9kai5qsqqd"; depends=[Biostrings plyr R_utils Rsamtools]; }; + evaluomeR = derive2 { name="evaluomeR"; version="1.16.0"; sha256="0fqwqibm8h1n6zbb4g1cjpnmhsw8x7q8gznpgmkx1kr2pbbqaibf"; depends=[class cluster corrplot flexmix fpc ggdendro ggplot2 kableExtra MASS matrixStats mclust MultiAssayExperiment plotrix prabclus randomForest Rdpack reshape2 SummarizedExperiment]; }; + exomeCopy = derive2 { name="exomeCopy"; version="1.46.0"; sha256="1flsskpdbs1fm5pw63p837w4fvzzhv5prcxhs2j7mqqbwi8grb9y"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + exomePeak2 = derive2 { name="exomePeak2"; version="1.12.0"; sha256="00sihyf2xv0sq4k4hsi08rvyyp8m0bv49bfnrfpi6vaml0nyhl3m"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DESeq2 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magrittr mclust Rsamtools rtracklayer S4Vectors speedglm SummarizedExperiment]; }; + extraChIPs = derive2 { name="extraChIPs"; version="1.4.1"; sha256="17p97g4p4xihfhkg66mx87vnhrhmaqmdq6kffysc2v83rzv721hr"; depends=[BiocIO BiocParallel broom ComplexUpset csaw dplyr edgeR EnrichedHeatmap forcats GenomeInfoDb GenomicInteractions GenomicRanges ggforce ggplot2 ggrepel ggside glue Gviz InteractionSet IRanges limma patchwork RColorBrewer rlang Rsamtools rtracklayer S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect vctrs VennDiagram]; }; + fCCAC = derive2 { name="fCCAC"; version="1.26.0"; sha256="1z3494r3anzfdayfx7w925ic97anha20lb3wnv1nlsq88a8mv1wd"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; + fCI = derive2 { name="fCI"; version="1.30.0"; sha256="061rm7rcimwsj4mfqa3976vhnd69isgl6k6091yyysjwbwqrlk1r"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; + fabia = derive2 { name="fabia"; version="2.46.0"; sha256="1bcvyd3k82gjilcw2bvn0n7f2dfmvnvxr2576izbd7dqsnflawb8"; depends=[Biobase]; }; + factDesign = derive2 { name="factDesign"; version="1.76.0"; sha256="1l8227wdf9nczmqqwbxi7r7r250bndh55jn8gqaygdw1z5hf0f6s"; depends=[Biobase]; }; + factR = derive2 { name="factR"; version="1.2.0"; sha256="1xh6y164qv08lppvggdnbsk2mwq0fddmlbq7g7zrzbhdlw3ip5yh"; depends=[BiocGenerics BiocParallel Biostrings crayon data_table dplyr drawProteins GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges pbapply purrr RCurl rlang rtracklayer S4Vectors stringr tibble tidyr wiggleplotr XML]; }; + famat = derive2 { name="famat"; version="1.10.0"; sha256="10p67y99pbq93h22cz5w51japkb61m65bavmw7i6mg1m6rnsrfq2"; depends=[BiasedUrn clusterProfiler dplyr DT GO_db gprofiler2 KEGGREST magrittr mgcv ontologyIndex org_Hs_eg_db plotly reactome_db rWikiPathways shiny shinyBS shinydashboard stringr tidyr]; }; + farms = derive2 { name="farms"; version="1.52.0"; sha256="1w1bw8bglcmjsz83vc8s5wl1c58x2bvd365k984pxaw3xl9fj92j"; depends=[affy Biobase MASS]; }; + fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.36.0"; sha256="1fxvgmx7s6g6s3zbavklmpm8xsqvnhaz5dc1wrp33r03pwwh5d5b"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; + fastreeR = derive2 { name="fastreeR"; version="1.4.0"; sha256="06c9041ng93x18q0cjcnb8cvkbhs3axzpbmxn4w9izal87nd3cnf"; depends=[ape data_table dynamicTreeCut R_utils rJava stringr]; }; + fastseg = derive2 { name="fastseg"; version="1.46.0"; sha256="0gygyf1xq1z6vzand43n965p366zh0k3rv58gnyqa81whj4dvcq3"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; + fcScan = derive2 { name="fcScan"; version="1.14.0"; sha256="071sylwwj27bk39pkn5a29r7bmfpmyaixkkg7dqcdq230c1dsrps"; depends=[doParallel foreach GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; }; + fcoex = derive2 { name="fcoex"; version="1.13.0"; sha256="085r5s5sqrj2701zk5kv3818ksxvxzd76lknzi6bk1svw4d3lsyc"; depends=[clusterProfiler data_table dplyr FCBF ggplot2 ggrepel igraph intergraph Matrix network pathwayPCA progress scales SingleCellExperiment sna stringr]; }; + fdrame = derive2 { name="fdrame"; version="1.72.0"; sha256="12dvzi621k578q73vf79qb6078i43j3mrpbg0n0v4zz1hima1kyr"; depends=[]; }; + fedup = derive2 { name="fedup"; version="1.8.0"; sha256="1cnylpj4jhp1qayjaxll2nal49k1lw6ifa7fgbl7cv4749p817gr"; depends=[data_table dplyr forcats ggplot2 ggthemes openxlsx RColorBrewer RCy3 tibble]; }; + ffpe = derive2 { name="ffpe"; version="1.44.0"; sha256="0wyc84bbvqmw0g10zrj0j0qcvp7w4vf7cd6mjm3qqnvp6g1f8wx4"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; + fgga = derive2 { name="fgga"; version="1.8.0"; sha256="0l63sc5zbj0612dgsdmr7jl6p6blwqf733xln6g5k8c95rwg7p9n"; depends=[BiocFileCache curl e1071 graph gRbase jsonlite RBGL]; }; + fgsea = derive2 { name="fgsea"; version="1.26.0"; sha256="0chnrwiwk31crrx4am1yrbxjdqd3jycgjgczqzj7lxaa9v7lvm7z"; depends=[BH BiocParallel cowplot data_table fastmatch ggplot2 Matrix Rcpp scales]; }; + fishpond = derive2 { name="fishpond"; version="2.6.0"; sha256="0lpafc1770kh4j151509d9lrpfj9jgla14km4vsfrqjmyhf2prss"; depends=[abind GenomicRanges gtools IRanges jsonlite Matrix matrixStats qvalue S4Vectors SingleCellExperiment SummarizedExperiment svMisc]; }; + flagme = derive2 { name="flagme"; version="1.56.0"; sha256="06zhrbb8hkvakxx9c6rl5z3fxm9w9ccr7k90d1snv3m5ijsczlgf"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; + flowAI = derive2 { name="flowAI"; version="1.30.0"; sha256="0ydy98qsiqpw0b6fvmlv09kza94qjcl40ma9pknzgbq21ac4z25g"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; + flowBeads = derive2 { name="flowBeads"; version="1.38.0"; sha256="1gpkbc7wq71mpkw1qfdnmya3f0j9nb56g68zxk851p06dzafx100"; depends=[Biobase flowCore knitr rrcov xtable]; }; + flowBin = derive2 { name="flowBin"; version="1.36.0"; sha256="100mnspids50gdqzcail93nqlsfmxv9f7a2qslyp9v5sh9c3gia6"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; + flowCHIC = derive2 { name="flowCHIC"; version="1.34.0"; sha256="1ay7wsbwwvqnb0wac1bby1b8d6swrzw8ix6vjcsll8k6xqf8x0pk"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; + flowClean = derive2 { name="flowClean"; version="1.38.0"; sha256="1djyk2ql3ww1kf5nbg14sbp14xs136cxl57yfcivjaaq6r0d2rs0"; depends=[bit changepoint flowCore sfsmisc]; }; + flowClust = derive2 { name="flowClust"; version="3.38.0"; sha256="1gmkmx6gzx4w39ijcad3lx2xnr2b833mhs8gcmc6k21k57aznzs2"; depends=[Biobase BiocGenerics flowCore graph]; }; + flowCore = derive2 { name="flowCore"; version="2.12.0"; sha256="1zkv4nwc6vg0jd4rh8mswdhr9cbq7ll98424hl5vs9hklal6kw8d"; depends=[BH Biobase BiocGenerics cpp11 cytolib matrixStats Rcpp RProtoBufLib S4Vectors]; }; + flowCut = derive2 { name="flowCut"; version="1.10.0"; sha256="0gfnc45yg6m6i4gkag65bkc3569441rrbyhi0xbxabrkb8m9a3f0"; depends=[Cairo e1071 flowCore flowDensity]; }; + flowCyBar = derive2 { name="flowCyBar"; version="1.36.0"; sha256="0rl1xmil6197pkmwkmvcvscsw7b0bp4ljrj3zjrihpjjq5x7fivw"; depends=[gplots vegan]; }; + flowDensity = derive2 { name="flowDensity"; version="1.34.0"; sha256="1g71sng0f53z6i8vsfirb0qpxadd4vcrmhcfndh88avphrp2i1i5"; depends=[car flowCore flowViz flowWorkspace gplots RFOC rgeos sp]; }; + flowFP = derive2 { name="flowFP"; version="1.58.0"; sha256="1c7j84ax36ybxs7qpkcnxggv4ajzh4dip76caaq7qw8fyyd9cdy4"; depends=[Biobase BiocGenerics flowCore flowViz]; }; + flowGate = derive2 { name="flowGate"; version="1.0.0"; sha256="0wkmpzrbv8bkh9b7glgh5zzncij4511wx5a59g4i5q2w9c3vw8bc"; depends=[BiocManager dplyr flowCore flowWorkspace ggcyto ggplot2 purrr rlang shiny tibble]; }; + flowGraph = derive2 { name="flowGraph"; version="1.8.0"; sha256="1kx01vzh5qrpsdqqmrkdjfkcvb1bilbvbx632dd4qdcsxizmj3bb"; depends=[data_table effsize furrr future ggiraph ggplot2 ggrepel gridExtra htmlwidgets igraph Matrix matrixStats purrr Rdpack stringi stringr visNetwork]; }; + flowMap = derive2 { name="flowMap"; version="1.38.0"; sha256="1mjv55cg5q6gx32sn6h5aqzrpjb5awb6489j8dya56fbivjs7zxj"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; + flowMatch = derive2 { name="flowMatch"; version="1.36.0"; sha256="0zbx53avgxcwsq2bfkadj4hqnm85djcj1wymyawhn4dvd11lsdjj"; depends=[Biobase flowCore Rcpp]; }; + flowMeans = derive2 { name="flowMeans"; version="1.60.0"; sha256="18lp1pickpd68fl7a4nidyvyh4yf53gbgn2f2yxaxfp2mk3mj88w"; depends=[Biobase feature flowCore rrcov]; }; + flowMerge = derive2 { name="flowMerge"; version="2.48.0"; sha256="1wcnch6kih9hhdhnxqlfqnrybzjzvgi9akjnlbw3s01knpprhsy9"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; + flowPeaks = derive2 { name="flowPeaks"; version="1.46.0"; sha256="1clmqvmqcpjw2gxbnln7qh26qi9iv5iphqd3ssyjipvbsg43spks"; depends=[]; }; + flowPloidy = derive2 { name="flowPloidy"; version="1.26.0"; sha256="05nwzprwrysykngv9d4gkiqbsxnzl5z68pvbqa6874kzz5wpa9fg"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; + flowPlots = derive2 { name="flowPlots"; version="1.48.0"; sha256="18cd61gwi3clsig2w8gwxc84dlmzkjqjnxbmdcaan9i47y8cvhxa"; depends=[]; }; + flowSpecs = derive2 { name="flowSpecs"; version="1.14.0"; sha256="0vyfl08q7v8hylb5imhq95kg5ancsi9hi4niqf65j29cql4hs8ij"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 reshape2 zoo]; }; + flowStats = derive2 { name="flowStats"; version="4.12.0"; sha256="13mdpdndalm0d6azjancw0xcbdc674ivkj8kp6ccfpdd7gydhr4j"; depends=[Biobase BiocGenerics cluster corpcor fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS mnormt ncdfFlow RColorBrewer rrcov]; }; + flowTime = derive2 { name="flowTime"; version="1.24.0"; sha256="1lkss5y5fxxswdjl4ry8xawy1as0jsxck7ahn2ajxycsj4kplr7l"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; + flowTrans = derive2 { name="flowTrans"; version="1.52.0"; sha256="1mmi75n957wlmp8x34p1h4giq89g20ahyvzrvf582w5662id9k34"; depends=[flowClust flowCore flowViz]; }; + flowVS = derive2 { name="flowVS"; version="1.32.0"; sha256="1qm6qs8rs3qc3x9nj3kn7qrnfaqzdw5rj7bzfkhfvvxcsnmgmch8"; depends=[flowCore flowStats flowViz]; }; + flowViz = derive2 { name="flowViz"; version="1.64.0"; sha256="0y16hzadpr5c99cwkphc07vh6lypgfk5nacbmn7mmrw01b3gbk67"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; + flowWorkspace = derive2 { name="flowWorkspace"; version="4.12.0"; sha256="1ln98xnnqlz3hqdyhypzarw7jcghd5gjaw8h42yw41w0plhh4wyr"; depends=[BH Biobase BiocGenerics cpp11 cytolib data_table DelayedArray dplyr flowCore ggplot2 graph matrixStats ncdfFlow RBGL Rgraphviz Rhdf5lib RProtoBufLib S4Vectors scales XML]; }; + flowcatchR = derive2 { name="flowcatchR"; version="1.34.0"; sha256="159j5izrgmc8mqn48aq9n4da07mw375yp62g9rdml266wvyvvm9f"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; + fmcsR = derive2 { name="fmcsR"; version="1.42.0"; sha256="0ci77gbz93i3s2j2gjp7y3ssn6bcdcmqnl23smnjai7qjmln64dp"; depends=[BiocGenerics ChemmineR RUnit]; }; + fmrs = derive2 { name="fmrs"; version="1.10.0"; sha256="17bwvymh1vk6xh1631dvkjxkap9b2azyypncjyvg6s5i9y0dabz3"; depends=[survival]; }; + fobitools = derive2 { name="fobitools"; version="1.8.0"; sha256="18zq0f83xs8609lx8m80p5338alnsby02n3jk14p4x7laf5z2dpv"; depends=[clisymbols crayon dplyr fgsea ggplot2 ggraph magrittr ontologyIndex purrr RecordLinkage stringr textclean tictoc tidygraph tidyr vroom]; }; + frenchFISH = derive2 { name="frenchFISH"; version="1.12.0"; sha256="1v4k1vhmsvq0gkz8af4kr7w9zhm6d9ifjc65bmr4n6bkw6byqyq1"; depends=[MCMCpack NHPoisson]; }; + frma = derive2 { name="frma"; version="1.52.0"; sha256="1wwlivl8wdb4wqggab3v0i91qrp42z0nljnsgrsayr1q3ym27zp4"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; + frmaTools = derive2 { name="frmaTools"; version="1.52.0"; sha256="05wpgn7d5vv3f13hjmkb34phbqjq0vwdmb64v8aaxz85am2k2d2w"; depends=[affy Biobase DBI preprocessCore]; }; + funtooNorm = derive2 { name="funtooNorm"; version="1.24.0"; sha256="15djkh6fck0962zzqf6ag8y1nbjyhdsr6afqfr9266ky73dlmijb"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; + gCrisprTools = derive2 { name="gCrisprTools"; version="2.6.0"; sha256="02ahb82mm3mdkim63vh5iz38sds26nr8l5ppbvpbg4g8i9524j2x"; depends=[Biobase ComplexHeatmap ggplot2 limma rmarkdown RobustRankAggreg SummarizedExperiment]; }; + gaga = derive2 { name="gaga"; version="2.46.0"; sha256="1jrax6w1z7zv1nf3486c1rmwnspj56x4mxy690jn8gp0jkiashk5"; depends=[Biobase coda EBarrays mgcv]; }; + gage = derive2 { name="gage"; version="2.50.0"; sha256="16wx2w70i12420022xz2zx8pizzyxb7z1pcmqn515cs89f1qcnli"; depends=[AnnotationDbi GO_db graph KEGGREST]; }; + gaggle = derive2 { name="gaggle"; version="1.68.0"; sha256="17li1wiwf4mqiq2zwgphqslw1pliyhq8lgg90lj82ymxrm2m30nq"; depends=[graph rJava RUnit]; }; + garfield = derive2 { name="garfield"; version="1.28.0"; sha256="1a39988gf8a3m9j176h464n3a26j1mx7yhlbg2glqrzq9rfrc206"; depends=[]; }; + gcapc = derive2 { name="gcapc"; version="1.24.0"; sha256="14vqdqk1nnrj2w17krdy450lj72vjsf3d5vpgz9pjz58kz9ygh26"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; + gcrma = derive2 { name="gcrma"; version="2.72.0"; sha256="0k4fsmqkv82d3a6v3gwphvbri5sgbd3f1s4qyv960rhyk2xj2b4p"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; + gdsfmt = derive2 { name="gdsfmt"; version="1.36.0"; sha256="10k445cwb5jhgcr0zf85x24mvldwk26zpwh0wq4himr44aha3bwx"; depends=[]; }; + geNetClassifier = derive2 { name="geNetClassifier"; version="1.40.0"; sha256="1bn7h8jwmmgqzp0s3xdbsicm8pxmrgvnxmjnjs10d1rvp8znzjnn"; depends=[Biobase e1071 EBarrays minet]; }; + gemini = derive2 { name="gemini"; version="1.14.0"; sha256="0cxf5ank6m87nz5wgjigg64yl91z70qsmz452v4vl8qs08yi5g07"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; }; + gemma_R = derive2 { name="gemma.R"; version="1.2.0"; sha256="116if5ngprsvj5nzipcgj4nn0pqx3901rfzd7fzh90cy4q8xg2xv"; depends=[assertthat Biobase bit64 data_table glue httr jsonlite lubridate magrittr memoise rappdirs rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + genArise = derive2 { name="genArise"; version="1.76.0"; sha256="1haqnngyjgncddpa4hfd99m5w5zff2hriwq484y14k0ws1k2vd0b"; depends=[locfit tkrplot xtable]; }; + genbankr = derive2 { name="genbankr"; version="1.27.0"; sha256="0fv87cf2y10ijlb0g1x9g9wh95qyljqb1c7k1ihbnjcg36xkh8lc"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; + geneAttribution = derive2 { name="geneAttribution"; version="1.26.0"; sha256="1ywbjvs9aqsksiy7834ir7a8vpb5n5qdjkjsf7qpr1n47iin7kax"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; + geneClassifiers = derive2 { name="geneClassifiers"; version="1.24.0"; sha256="18v9c4pcd0mjwv4xyyy5nbppn6vfd9fxsf8cnz55k6v7c4psvb15"; depends=[Biobase BiocGenerics]; }; + geneRecommender = derive2 { name="geneRecommender"; version="1.72.0"; sha256="12qnjgxkq9882q5r70m51rn0k6lxakd19yh60ri7l4prxlzz50br"; depends=[Biobase]; }; + geneRxCluster = derive2 { name="geneRxCluster"; version="1.36.0"; sha256="0mqhcxxhsnmiw01b77i6g6gsndq87qp948va6r5s56ygfj0gyqs1"; depends=[GenomicRanges IRanges]; }; + geneXtendeR = derive2 { name="geneXtendeR"; version="1.26.0"; sha256="0dba80hvvwm3yvr1jg2c168wxq53clr63wjf5cdfaig8i40z378m"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; + genefilter = derive2 { name="genefilter"; version="1.82.1"; sha256="1wpg8banz6s6smycfqf9hqryp4kf2gs069s7npyvpq53wy0kxyny"; depends=[annotate AnnotationDbi Biobase MatrixGenerics survival]; }; + genefu = derive2 { name="genefu"; version="2.32.0"; sha256="0jiirmi6wb6zr5spmn8nrqcrk3ks8hhs1nrm6aiwrky26rn1szrv"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; }; + geneplast = derive2 { name="geneplast"; version="1.26.0"; sha256="11rjyj2qbbqqjw8s1j5rjgx1h6rzypdnv47vx5xml46qd97ks7fm"; depends=[ape data_table igraph snow]; }; + geneplotter = derive2 { name="geneplotter"; version="1.78.0"; sha256="03x90l7rvxk0z03p5immqbyyhiygi3mkik636al1cjdcxl9dr5f8"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; + genoCN = derive2 { name="genoCN"; version="1.52.0"; sha256="0dlb3bxbmj9pgvb2zs4q3iy1vpnafwd3qnxy951qm2ln08ksidhy"; depends=[]; }; + genomation = derive2 { name="genomation"; version="1.32.0"; sha256="0y6a2qxxp5mnkllcq46j00069z22ixnrbkd15s007a35lhkibz21"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; + genomeIntervals = derive2 { name="genomeIntervals"; version="1.56.0"; sha256="1xd5frbq6fyba8dbqw02c1y6h7bcmfagsr2qs92kq4a3b4k1rn13"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; + genomes = derive2 { name="genomes"; version="3.30.0"; sha256="0nlkm7mx5cmxpqmkj4528dxdxv0fzbbwj866xybwfzk58pz3ahs2"; depends=[curl readr]; }; + genomicInstability = derive2 { name="genomicInstability"; version="1.6.0"; sha256="0yhn5yw2n3q265cqr7gclxar8mg3s01n4imchnkaxa8q22qyjfdc"; depends=[checkmate mixtools SummarizedExperiment]; }; + gep2pep = derive2 { name="gep2pep"; version="1.20.0"; sha256="07fw9xbic11zrxrzs1x93fjc5p6hiy88d4hq1lqf708cgg2lrwgj"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; + gespeR = derive2 { name="gespeR"; version="1.31.0"; sha256="1d0qid1lg4m57fmxni34g60h2b1nwlq69kibjsr1w47zxnnlg8ds"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; + getDEE2 = derive2 { name="getDEE2"; version="1.10.0"; sha256="015mdpir1apx9s4f80yb7sw3c2zsspjk7bfanhvpm95yq8hq4j1n"; depends=[htm2txt SummarizedExperiment]; }; + geva = derive2 { name="geva"; version="1.8.0"; sha256="1xwlniz7ivrlbnlj0jwh950v371yp2yvwjb0ssc6c9cwiyzx6cpx"; depends=[dbscan fastcluster matrixStats]; }; + ggbio = derive2 { name="ggbio"; version="1.48.0"; sha256="0n7nghrrs7fp0b7jk2pfbkzl0lbv55xxk2xqnq2i77ps22ms0h9y"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + ggcyto = derive2 { name="ggcyto"; version="1.28.0"; sha256="1b2xsn0avm6r4zylygdhab3zz3v8qvwbm1xr58894dwgysdk8zc5"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; + ggmanh = derive2 { name="ggmanh"; version="1.4.0"; sha256="1hxajvnjhr2x6vrn55jcc8vfyd1myy3yp0aypxmnwvpjxqc597jb"; depends=[gdsfmt ggplot2 ggrepel RColorBrewer rlang scales SeqArray]; }; + ggmsa = derive2 { name="ggmsa"; version="1.6.0"; sha256="077wx2l4mg95zkx5728ajnr9qm70r6rp2d426w2inwsfl99prqdx"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 ggtree magrittr R4RNA RColorBrewer seqmagick statebins tidyr]; }; + ggspavis = derive2 { name="ggspavis"; version="1.6.0"; sha256="0df7xgp952a6v4qpby4yqxa473i7w732imv9lc1svnin9184ip8m"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + ggtree = derive2 { name="ggtree"; version="3.8.0"; sha256="174bdjqvq51rpdyjlcwgbxfmkpsbz6m94ymmhmsq3x39xlcbrq7y"; depends=[ape aplot cli dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; + ggtreeDendro = derive2 { name="ggtreeDendro"; version="1.2.0"; sha256="0c82nkp5iv9xib22j3zlh009vg9m94jh89pryx07k4j22r9gjdci"; depends=[ggplot2 ggtree tidytree]; }; + ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.10.0"; sha256="19xikly6ksh03kgpz35wj2d2gdbpikhrk71ahj9ghhkmlwdyjbcr"; depends=[cli ggnewscale ggplot2 ggtree magrittr rlang tidytree]; }; + girafe = derive2 { name="girafe"; version="1.52.0"; sha256="0cddz4jm063fgjnxzzsdnllaydfc2zxpyp8by2cacy2qzx95s8qy"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; + glmGamPoi = derive2 { name="glmGamPoi"; version="1.12.1"; sha256="05v9lrjbipz9av1gb0x8kd9mkivxy13wjbs5g6rdw3y72gqqv91d"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array MatrixGenerics matrixStats Rcpp RcppArmadillo rlang SingleCellExperiment SummarizedExperiment vctrs]; }; + glmSparseNet = derive2 { name="glmSparseNet"; version="1.18.0"; sha256="1vhiw37nj770qh21yd8z9xqxn2zrr4raw75avjn139yfcr4qqmi8"; depends=[biomaRt digest dplyr forcats futile_logger futile_options ggplot2 glmnet glue httr Matrix MultiAssayExperiment readr reshape2 stringr SummarizedExperiment survminer]; }; + globalSeq = derive2 { name="globalSeq"; version="1.28.0"; sha256="0nbqv3l8r973259v1jaqa1brlllci1q5dmhbbxrw5lxihpsdwfps"; depends=[]; }; + globaltest = derive2 { name="globaltest"; version="5.54.0"; sha256="0jjhhg4vi44xqlvmcd80m30m93qyd4c79i7m9jn5hz3mw211xaig"; depends=[annotate AnnotationDbi Biobase survival]; }; + gmapR = derive2 { name="gmapR"; version="1.42.0"; sha256="1l7n7sa4jkf2pgq9ap8qfxijzqklafi1k99wmvf8zaqlq5pa2fr6"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + gmoviz = derive2 { name="gmoviz"; version="1.12.0"; sha256="0g7hv634m1hmmggp24d40fvja9gqfj72c69kxkxqdpjgjv7wfp2w"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; }; + goProfiles = derive2 { name="goProfiles"; version="1.62.0"; sha256="0kx4cbnp6xwrbaaaa81lj5gkqh5a1pv67c2bmi444b0grjiyij24"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; + goSTAG = derive2 { name="goSTAG"; version="1.24.0"; sha256="0663cjc10008yvvnxwqv3zhjzy4lw92ah0sdr4kdb2cnaykq79qm"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; + goSorensen = derive2 { name="goSorensen"; version="1.2.0"; sha256="0dzzqq3ivp4z01l54wz421cannbm6c6fm0mf49mwqw8jkfa3d28i"; depends=[clusterProfiler GO_db goProfiles org_Hs_eg_db]; }; + goTools = derive2 { name="goTools"; version="1.74.0"; sha256="1wy9x13w066wimdq980rmk4461ddnb10zii2g4jghhipg8vfibqh"; depends=[AnnotationDbi GO_db]; }; + goseq = derive2 { name="goseq"; version="1.52.0"; sha256="1r13n64s9fbx951yaa4mpna71vynbkjz78irk96yzh2x2zzxpjvx"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; + gpls = derive2 { name="gpls"; version="1.72.0"; sha256="1vs58lz8wg143j9dnzqli5yrjsm8mb1qm0p7dy4iyxy5a2lm1npp"; depends=[]; }; + gpuMagic = derive2 { name="gpuMagic"; version="1.16.0"; sha256="13ip50m6if2255ml6gpvqxndrpfbjdfxxcc3f5dzqn09d6g2da5z"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; }; + granulator = derive2 { name="granulator"; version="1.8.0"; sha256="0fsnzdhgpjsayrsf5kmp1rnc81cnwl44bqq48hkx1y06s60ba7fs"; depends=[cowplot dplyr dtangle e1071 epiR ggplot2 ggplotify limSolve magrittr MASS nnls pheatmap purrr rlang tibble tidyr]; }; + graper = derive2 { name="graper"; version="1.16.1"; sha256="16nlkfhhlkqw0w72g908ppbk35q0vsa9n63zdz59vqf3fymhq1ir"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; }; + graph = derive2 { name="graph"; version="1.78.0"; sha256="184izzxc8bpagcac8wqinjp8kmf9zpvjibl0g32nnr64kp9f4rsn"; depends=[BiocGenerics]; }; + graphite = derive2 { name="graphite"; version="1.46.0"; sha256="1fhjkgl6567qchi5sfdqnznalm1l7c7pabz8jc9d7ib9x4g922q5"; depends=[AnnotationDbi graph httr purrr rappdirs rlang]; }; + groHMM = derive2 { name="groHMM"; version="1.34.0"; sha256="1zg30cb4s97zdv6c0f53ix6a97aan5w3lx698sa4cqvi4hbz8f35"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; + gscreend = derive2 { name="gscreend"; version="1.14.0"; sha256="17fx02qvsixvbvnb47xc47lwjh388cv2haar5kp7kjkwgfl6kjl4"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; }; + gsean = derive2 { name="gsean"; version="1.20.2"; sha256="0cdivyv94vxn239vpfmx9xp2r54x3frj72d4ljwllqm1xbwk0pg3"; depends=[fgsea PPInfer]; }; + gtrellis = derive2 { name="gtrellis"; version="1.32.0"; sha256="1kk7ysscq8xdbn35b20s8sn8gl93sy0c718fmvr1yrhiqaxq5alr"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; + gwascat = derive2 { name="gwascat"; version="2.32.0"; sha256="1i64bk0ac2v0w5yjxdhnbjh05l6n9fi7gxap0zp73wxj7kl75wkd"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges readr S4Vectors snpStats VariantAnnotation]; }; + gwasurvivr = derive2 { name="gwasurvivr"; version="1.18.0"; sha256="0aznpc9ni87kvm7lq2dnf8lzrd4h2mja8h9sya8ggfz8nlsk6wll"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; + h5vc = derive2 { name="h5vc"; version="2.34.0"; sha256="1srzylm56nj7k0jlmj8g3qm9f99hbsa6palhw7rvs3kvj4479shs"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; + hapFabia = derive2 { name="hapFabia"; version="1.42.0"; sha256="0df19hnx21v09sah0gz6p48c5a8fb6701bqvsnipyik553dwkc2i"; depends=[Biobase fabia]; }; + hca = derive2 { name="hca"; version="1.8.0"; sha256="08al5882vwck7ljirsq386gk11i8gxyfq8zd6x5c6xjdg623556q"; depends=[BiocFileCache digest dplyr DT httr jsonlite miniUI readr shiny tibble tidyr]; }; + heatmaps = derive2 { name="heatmaps"; version="1.24.0"; sha256="04mis4ayjfp31rd9sjiix6sy74c7cd50c1pyhb9n9r7629447miv"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; + hermes = derive2 { name="hermes"; version="1.4.0"; sha256="1kdrfhg8xpplcijivrvw4dmvkvghii6y1y11z7dfkmlcqg8jyqk2"; depends=[assertthat Biobase BiocGenerics biomaRt checkmate circlize ComplexHeatmap DESeq2 dplyr edgeR EnvStats forcats GenomicRanges ggfortify ggplot2 ggrepel IRanges lifecycle limma magrittr matrixStats MultiAssayExperiment purrr R6 Rdpack rlang S4Vectors SummarizedExperiment tidyr]; }; + hiAnnotator = derive2 { name="hiAnnotator"; version="1.34.0"; sha256="0nk1ch5fv9ilp5h95dhljcss0mkyifawf375qhn2gynyivy2lma1"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; + hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.36.0"; sha256="138i5dfizhcc9az4sd3na1zh8gkyd5abzzhv6h4dg8mb24n4cd8s"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; + hierGWAS = derive2 { name="hierGWAS"; version="1.30.0"; sha256="19fgcfspm3ac5wr0siw3ppl6jwicj7grga79yyh435mzkfy0z920"; depends=[fastcluster fmsb glmnet]; }; + hierinf = derive2 { name="hierinf"; version="1.18.0"; sha256="0m3r27j6r3glwmc0smmwyg9xrnm306sc6g58mir24aa3cxyxi60m"; depends=[fmsb glmnet]; }; + hipathia = derive2 { name="hipathia"; version="3.0.0"; sha256="0m0jy4p0q25nb9lcnscyh0zmhcx7bp885rmavgnwdfz6i19c3am9"; depends=[AnnotationHub coin DelayedArray dplyr ggplot2 ggpubr igraph limma matrixStats MetBrewer MultiAssayExperiment preprocessCore reshape2 S4Vectors servr SummarizedExperiment tibble visNetwork]; }; + hmdbQuery = derive2 { name="hmdbQuery"; version="1.20.0"; sha256="0d4jldxqxmwp87hgn71zjlk9ikpz688cxc4vfv2biq4m6m0rbr60"; depends=[S4Vectors XML]; }; + hopach = derive2 { name="hopach"; version="2.60.0"; sha256="1r3ca5x1w5aj8vakp1yzqjqqqfhi4mcx1hy1szvihwygamh5ghns"; depends=[Biobase BiocGenerics cluster]; }; + hpar = derive2 { name="hpar"; version="1.42.0"; sha256="1sg0mjada72a13xh3k6xsiaff7xj4mp76r6i8iab8nfkvng07p4i"; depends=[ExperimentHub]; }; + hummingbird = derive2 { name="hummingbird"; version="1.10.0"; sha256="07yqzy1shz8s99kq3jkpwycqhpmalcq4ghzpysjh8j24khfkmc9s"; depends=[GenomicRanges IRanges Rcpp SummarizedExperiment]; }; + hyperdraw = derive2 { name="hyperdraw"; version="1.52.0"; sha256="0vhfvmv6b3kab6a8hy2y9zwxgzwb5vliaaxhlrgz8i4pvvq5nhqb"; depends=[graph hypergraph Rgraphviz]; }; + hypergraph = derive2 { name="hypergraph"; version="1.72.0"; sha256="13f3m8m6i99hzm94hriry645jcn0a1ki8z8wmn3mkasdi6bzx20h"; depends=[graph]; }; + iASeq = derive2 { name="iASeq"; version="1.44.0"; sha256="0xjs26v21bl671pnz7zifjkj6z8gwafmixsskih5asg7k57pzmi8"; depends=[]; }; + iBBiG = derive2 { name="iBBiG"; version="1.44.0"; sha256="1yjg6xnfq6na6gmr8j4xzhxfs3fh5syh33mq46sfi7m5x4iwql21"; depends=[ade4 biclust xtable]; }; + iBMQ = derive2 { name="iBMQ"; version="1.40.0"; sha256="1id4zck9pndrmg8digrljy2n3h34gy3d1m523jy43wdwnshz6w6p"; depends=[Biobase ggplot2]; }; + iCARE = derive2 { name="iCARE"; version="1.28.0"; sha256="1zbwhpfbcrjbyglm46a5i4h2ddd5pk663pmcnyzpxjvx8ymnlnxr"; depends=[gtools Hmisc plotrix]; }; + iCNV = derive2 { name="iCNV"; version="1.20.0"; sha256="073ygwy4db8f4wdss8rcdafgp4grz27h4n2kwvw9rridykjygdyw"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; + iCOBRA = derive2 { name="iCOBRA"; version="1.28.0"; sha256="1dirwfmjl15lqh1dx1yhaqbfiz5iwzp03d3g64iy31nzi8sha4qq"; depends=[dplyr DT ggplot2 limma markdown reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; + iCheck = derive2 { name="iCheck"; version="1.30.0"; sha256="08f16lcdkdx37yb2i7304y5nc74i7b6sqikj8x36g93l1z5f23k7"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; + iChip = derive2 { name="iChip"; version="1.54.0"; sha256="0cd8s6r775g9x58zri2kywbz9lki0m9gkb5xr4r7dw8isly5926i"; depends=[limma]; }; + iClusterPlus = derive2 { name="iClusterPlus"; version="1.36.1"; sha256="1lbkmin9pkk9yzpmwrfyniyqnwmp0wcgiirq8prmzi5mvndl6wm3"; depends=[]; }; + iGC = derive2 { name="iGC"; version="1.30.0"; sha256="0vrxy7vrd2b6r1v1aqzv246y0hlggs98bxx06z31lwd6jmj29p18"; depends=[data_table plyr]; }; + iPAC = derive2 { name="iPAC"; version="1.44.0"; sha256="1clnni5fpipww6z4vzmgighy5b55fa2zdpblsx26jcra3kkr83nn"; depends=[Biostrings gdata multtest scatterplot3d]; }; + iPath = derive2 { name="iPath"; version="1.6.1"; sha256="1sx26iid7jkgnk99bd5c3w6f3k4cfxjx7vplmz82sd4zn2zh3334"; depends=[BiocParallel ggplot2 ggpubr matrixStats mclust Rcpp RcppArmadillo survival survminer]; }; + iSEE = derive2 { name="iSEE"; version="2.12.0"; sha256="1npwdl45459wfp589mznzw6xvya9zwij3gxz32pxg86l94d7fqba"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 ggrepel igraph mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; + iSEEhex = derive2 { name="iSEEhex"; version="1.2.0"; sha256="0ycym1y9nlxzp7jd73agk0306sgvxxlfh6bs5g1ychl27jriidw3"; depends=[ggplot2 hexbin iSEE shiny SummarizedExperiment]; }; + iSEEhub = derive2 { name="iSEEhub"; version="1.1.1"; sha256="0qyapvyqxpc4z2r9m96yhmhm2qyyxya04nrz3s6rnm68lprgb81w"; depends=[AnnotationHub BiocManager DT ExperimentHub iSEE rintrojs S4Vectors shiny shinydashboard shinyjs SingleCellExperiment SummarizedExperiment]; }; + iSEEu = derive2 { name="iSEEu"; version="1.12.0"; sha256="1i9ww97910fyk1z0vj69kgm1xwcgy376zrzxwmpv11cp20qp2wc2"; depends=[colourpicker DT ggplot2 IRanges iSEE iSEEhex S4Vectors shiny shinyAce SingleCellExperiment SummarizedExperiment]; }; + iSeq = derive2 { name="iSeq"; version="1.52.0"; sha256="11axazmy1q5ragybi2bqk52xfar8p8r94jbnglzn8k7pdfxkgv83"; depends=[]; }; + iasva = derive2 { name="iasva"; version="1.18.0"; sha256="058n3j5hr6mj3199b3ws9dha7lwk4xplh7xswhdr4q6l0545z526"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; + ibh = derive2 { name="ibh"; version="1.48.0"; sha256="0p13qlk49fgadbhc5nw6n702603jpmcx7q1rbf3frynlxy8px2i0"; depends=[simpIntLists]; }; + icetea = derive2 { name="icetea"; version="1.17.0"; sha256="0dxj0rd9620b374395lgqzpqcn4yykqfb1zhaq0ahrh00l3vhnfx"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; + ideal = derive2 { name="ideal"; version="1.24.1"; sha256="18drv785az6kni15j9j1nqiyi58dvbyk2ik1571y365i0s6c48wp"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; + idiogram = derive2 { name="idiogram"; version="1.76.0"; sha256="0fqy4gbbqk43bncawhm7p1dmrg44sg345z7hj2ar7qlbfxh0drqw"; depends=[annotate Biobase plotrix]; }; + idpr = derive2 { name="idpr"; version="1.10.0"; sha256="0p7np7jlwvkdlsram9q5vmarghxdpaskv43krsc1155cr8h676g1"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; }; + idr2d = derive2 { name="idr2d"; version="1.14.0"; sha256="0inj3lwcrpx9wyxvbsijsr5l6lzjm5mxf23khsswfl1lc9c0bqhn"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; + igvR = derive2 { name="igvR"; version="1.20.0"; sha256="0kfsl2w3a9bycp7baha1q5a1n7hfzp6scw1hv1kjsmvc6f5mszzh"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv httr RColorBrewer rtracklayer VariantAnnotation]; }; + illuminaio = derive2 { name="illuminaio"; version="0.42.0"; sha256="190i3b9qmh26bic1lzi54mw4p1nrg57qijl1pg6b29w3i6srq692"; depends=[base64]; }; + imcRtools = derive2 { name="imcRtools"; version="1.6.1"; sha256="1awxjyrdp993k7pgdlqfzmhagpi366fdihbg0hknsnl4kbqazv9k"; depends=[abind BiocNeighbors BiocParallel concaveman cytomapper data_table distances dplyr DT EBImage ggplot2 ggraph igraph magrittr MatrixGenerics pheatmap readr RTriangle S4Vectors scuttle sf SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tidygraph tidyselect viridis vroom]; }; + immunoClust = derive2 { name="immunoClust"; version="1.32.0"; sha256="1pd26qli5bj05qivwppz5rpvzm28wp7aqymsg381yg7kzyqlqjdx"; depends=[flowCore lattice]; }; + immunotation = derive2 { name="immunotation"; version="1.8.0"; sha256="1pdzs1pv8pddcycacbhrswf73kbhamxw8fckapgf81zxav2sb2ml"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; + impute = derive2 { name="impute"; version="1.74.1"; sha256="0nz8ggzk2g5w20yyhp6av6hy69kbmg3ncfpq9ppmq6p5a0msx92l"; depends=[]; }; + infercnv = derive2 { name="infercnv"; version="1.16.0"; sha256="19fk4pzhwj9pfh4vg943xb4cdfpq65ax75d61w1mm3f71gg56z5g"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov igraph Matrix parallelDist phyclust RANN RColorBrewer reshape2 rjags Seurat SingleCellExperiment SummarizedExperiment tidyr]; }; + infinityFlow = derive2 { name="infinityFlow"; version="1.10.0"; sha256="1p3yshp34h5n3a5zd7fh9xpgbpdvbhr19p5lk11d7i5c6blb4dzh"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; }; + intansv = derive2 { name="intansv"; version="1.40.0"; sha256="04pzz33f1l22hi5nnj6hh5qlfmi923sqd49i7b0qhlx51kr7hzi3"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; + interacCircos = derive2 { name="interacCircos"; version="1.10.0"; sha256="0xda5l65jd0ny8ccjwgflmk3vnzcf56y8193b11p98d0mlprb1ix"; depends=[htmlwidgets plyr RColorBrewer]; }; + interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.38.0"; sha256="1y9fdnpz1bagrwhyj8jikp2q5fd9y74j48l5z7f0s88v88sa7szl"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; + interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.38.0"; sha256="1p3lwk8g14srkhl3x3i0v2d9071251ldy9964mii11k1bp2g08am"; depends=[BiocGenerics DT shiny]; }; + ipdDb = derive2 { name="ipdDb"; version="1.18.0"; sha256="1j7nvq77rpsalglnp3v9z9f59kj6ibvqv8996p6ibg4vyc0bcixg"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; + isobar = derive2 { name="isobar"; version="1.46.0"; sha256="0qwspzhnxgfcr5gvmki58drq79k66a0jr1xb19phjd8pb9kr5mqb"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; + isomiRs = derive2 { name="isomiRs"; version="1.28.0"; sha256="1z5brwymmchj1r5fziyljk4r30wa8pnr25kcwlw2gs9mscrxqy5i"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + iterClust = derive2 { name="iterClust"; version="1.22.0"; sha256="1harxq2kmx12lg70bnbqfb9gvvvxb3ww8c2bnpsr8v40zk86y2ss"; depends=[Biobase cluster]; }; + iterativeBMA = derive2 { name="iterativeBMA"; version="1.58.0"; sha256="1bnscaaz82324wf87n74cm36pzq0598b7pbvd1ijggr08m30ykns"; depends=[Biobase BMA leaps]; }; + iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.58.0"; sha256="0ypxilmch2h4gi6b3sad77f3mzbyiwxs0nc8z97l42gar6p1xrsv"; depends=[BMA leaps survival]; }; + ivygapSE = derive2 { name="ivygapSE"; version="1.22.0"; sha256="17rx8rvc2qinz6si6jwnr9884b0viq9957qj6ivpngmm47wmhbmn"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; + karyoploteR = derive2 { name="karyoploteR"; version="1.26.0"; sha256="1nqcm2jlazm8wsa4p6a59m1j8y1qdwg0w3kii4dqnkann3q2q68x"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + katdetectr = derive2 { name="katdetectr"; version="1.2.0"; sha256="061mxwm6rhlnhymif50d076hav7bh31a56ywh6aqp4rpd6l0sc6q"; depends=[Biobase BiocParallel BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 changepoint changepoint_np checkmate dplyr GenomeInfoDb GenomicRanges ggplot2 ggtext IRanges maftools plyranges Rdpack rlang S4Vectors tibble tidyr VariantAnnotation]; }; + kebabs = derive2 { name="kebabs"; version="1.34.0"; sha256="17nxbxgfnrjgdms8q8bi35j4llfgc1kyvzm07f9mgkhzmq6rs3z7"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; + keggorthology = derive2 { name="keggorthology"; version="2.52.0"; sha256="1gpxh87cnj91myizwkavl9r7ykdg637cs9vkbypfdaamhcsr1l9z"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; + kissDE = derive2 { name="kissDE"; version="1.20.0"; sha256="1dijdss2qakvgxshcpd5n95zly5q4b7fpkvxh265g8fj4b3hzf62"; depends=[ade4 aods3 Biobase DESeq2 doParallel DSS DT factoextra foreach ggplot2 gplots matrixStats shiny shinycssloaders]; }; + lapmix = derive2 { name="lapmix"; version="1.66.0"; sha256="1kymd9y1fy6wmkmsb3xi16hzacwb8myj012ksqdflpx679g2lya0"; depends=[Biobase]; }; + ldblock = derive2 { name="ldblock"; version="1.30.0"; sha256="18gqmwwi1i4gndqljy809n5zzx38agawxxwhlknpas6k2iskd1xq"; depends=[BiocGenerics httr Matrix rlang]; }; + lefser = derive2 { name="lefser"; version="1.10.0"; sha256="0wi70b4k7s0xj7bh46s0x0fckqc5qspzq8k4k913vg6cnhqgw2dd"; depends=[coin ggplot2 MASS SummarizedExperiment]; }; + les = derive2 { name="les"; version="1.50.0"; sha256="034254qz2kh4v1hnvriacnmsfdy2vhpr2xag939nq2v13xn23sic"; depends=[boot fdrtool gplots RColorBrewer]; }; + levi = derive2 { name="levi"; version="1.18.0"; sha256="1ff8w4bh2f488b2v9cgsdmc98xy33zfj1ffladdm6bhsmfqkgbsv"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 rmarkdown shiny shinydashboard shinyjs testthat xml2]; }; + limma = derive2 { name="limma"; version="3.56.1"; sha256="02c559an6hzk00bbvlrq1qljsnby4a53ng9jj6ff570mc6pabjn6"; depends=[]; }; + limmaGUI = derive2 { name="limmaGUI"; version="1.76.0"; sha256="14bkf8wsw6b7y5s96lbn1l112c7v8xsy9qnyg0dgxrx9li3mwrpy"; depends=[limma R2HTML tkrplot xtable]; }; + lineagespot = derive2 { name="lineagespot"; version="1.4.0"; sha256="1mmypd4rjdai3iyyp0sx1wk732kripjrimx1dby2xw397z1pszb4"; depends=[data_table httr MatrixGenerics stringr SummarizedExperiment VariantAnnotation]; }; + lionessR = derive2 { name="lionessR"; version="1.14.0"; sha256="0yfznjza95z18r62m35ck4f2sxyc12ip912m6p9zwfqviaczb1si"; depends=[S4Vectors SummarizedExperiment]; }; + lipidr = derive2 { name="lipidr"; version="2.13.0"; sha256="1r6rnr245hacagny2k3fv8x92ma2ixwd5q162ipcsy6c9fw9081z"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; + lisaClust = derive2 { name="lisaClust"; version="1.8.0"; sha256="18yqn9cjyj86inphsvs3c02hi9vb1x69cb67mmmx556ywyh1a817"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 pheatmap purrr S4Vectors SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom spicyR SummarizedExperiment tidyr]; }; + lmdme = derive2 { name="lmdme"; version="1.42.0"; sha256="1awnbfdfvlziik9nwp5xlpbhc7gp17q2z6sgilmrdmjx9cknbb41"; depends=[limma pls stemHypoxia]; }; + loci2path = derive2 { name="loci2path"; version="1.20.0"; sha256="1z4qxr8zc0miinh05pnks7h7ysqybsixln51fp0gfrb499jlbkfp"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; + logicFS = derive2 { name="logicFS"; version="2.20.0"; sha256="17sa4wr1zly8bj3fmqknxip6ss7q68f3bni20ckc9yljacdv24jx"; depends=[LogicReg mcbiopi survival]; }; + logitT = derive2 { name="logitT"; version="1.58.0"; sha256="0wd26k2n29i58iz9nr50xjsvc2s5ynbca0y2y4j9xqbvvpfjzk3v"; depends=[affy]; }; + lpNet = derive2 { name="lpNet"; version="2.32.0"; sha256="1msz4ibmxk20f1dn0mgq84323d7jcls97q4ydxh9gpwc41jh16v5"; depends=[lpSolve]; }; + lpsymphony = derive2 { name="lpsymphony"; version="1.28.0"; sha256="096d0dql1cg85mmxba3dy2a7ba3sxqphsviqqvx1n35xiidsnpyp"; depends=[]; }; + lumi = derive2 { name="lumi"; version="2.52.0"; sha256="1lxxqr7x9jdjrsj5j95jb0dbd7p208vifxw3j4s4140zh1ppxnpj"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; + m6Aboost = derive2 { name="m6Aboost"; version="1.6.0"; sha256="1y2mqv0w1yz47gskhsw5hk83f8kr1fy2k1g33dd7zcpx5h2habli"; depends=[adabag Biostrings BSgenome dplyr ExperimentHub GenomicRanges IRanges rtracklayer S4Vectors]; }; + mBPCR = derive2 { name="mBPCR"; version="1.54.0"; sha256="0q7m2j9x5yzh8bnki3cl0ljg0r744iw499ay57jl7ds902gr8738"; depends=[Biobase GWASTools oligoClasses]; }; + mCSEA = derive2 { name="mCSEA"; version="1.20.0"; sha256="1al8b9h7v9lcv9bsmy1idcaf1ry2pkbp2yyvkgbcg945fjrw656n"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; + maCorrPlot = derive2 { name="maCorrPlot"; version="1.70.0"; sha256="080pqdhk25kjkvg0i1701nipp1fzsil3hbl4al5c1svvsbh6zs2z"; depends=[lattice]; }; + maPredictDSC = derive2 { name="maPredictDSC"; version="1.38.0"; sha256="0ab6q7cws8svppp1h1a9ghng46v2ysfybcdmw3v7q1bg3yr8kp1j"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; + maSigPro = derive2 { name="maSigPro"; version="1.72.0"; sha256="0w8bq2mdf75ch78s68q50cxm3ppa3gc43s9d76nbqqh1rndgfm7y"; depends=[Biobase MASS mclust venn]; }; + macat = derive2 { name="macat"; version="1.74.0"; sha256="1m1sgnblxxhlx9zcwiryb8hsmisb8q017vx9qn34q1vj1ilw3rj8"; depends=[annotate Biobase]; }; + made4 = derive2 { name="made4"; version="1.74.0"; sha256="1233l5160msxp85vm2h0j3k073vv5d9wj55709x4s657fi9la6ij"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; }; + maftools = derive2 { name="maftools"; version="2.16.0"; sha256="1jvmqn33hxzscr8j7y9zw5sngglcy0zkl0386053lx5dl5s5iqyq"; depends=[data_table DNAcopy RColorBrewer Rhtslib survival zlibbioc]; }; + magpie = derive2 { name="magpie"; version="1.0.0"; sha256="1ny20mbwjxyxgzwjwzx08mw79rczh1siinpfb4rrhx9khkh1j4rd"; depends=[AnnotationDbi aod BiocParallel DESeq2 GenomicFeatures GenomicRanges IRanges Matrix matrixStats openxlsx RColorBrewer reshape2 Rsamtools rtracklayer S4Vectors TRESS]; }; + magrene = derive2 { name="magrene"; version="1.2.0"; sha256="1cjbhvc8jybvrl7mmpmgid2l0ss9a76mnhwlsddmh6b5apchi2xm"; depends=[BiocParallel]; }; + maigesPack = derive2 { name="maigesPack"; version="1.64.0"; sha256="106idgazh2wkv2z63wrbn6f4gaxzkmn95i8583a99f6mqnfbhcqx"; depends=[convert graph limma marray]; }; + makecdfenv = derive2 { name="makecdfenv"; version="1.76.0"; sha256="1a6kngwmc7nvzlgpnhdv4j180847gjh4i3dshld0pcvy3b6bjv8r"; depends=[affy affyio Biobase zlibbioc]; }; + mapscape = derive2 { name="mapscape"; version="1.24.0"; sha256="0m9j8g79lz0342vil5hp8srz2ff0jh3sidrdy5p2il9dxhxmh5x8"; depends=[base64enc htmlwidgets jsonlite stringr]; }; + mariner = derive2 { name="mariner"; version="1.0.0"; sha256="12q4pdq6dkw2xb23bqdzzc93dbna81cyq8akyy5nba0clcy5dd4h"; depends=[abind assertthat BiocGenerics BiocManager BiocParallel colourvalues data_table dbscan DelayedArray GenomeInfoDb GenomicRanges glue HDF5Array InteractionSet IRanges magrittr plotgardener plyranges progress purrr RColorBrewer rhdf5 rlang S4Vectors strawr SummarizedExperiment]; }; + marr = derive2 { name="marr"; version="1.10.0"; sha256="1pdf51mql49sypsndr76v1d10h11gb3b1rbsq7ww6q83phy0n600"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; + marray = derive2 { name="marray"; version="1.78.0"; sha256="1z8fx47ng1av8nfpk0i7wpb8k8lsrn66k613p36mbh19m5fx05ks"; depends=[limma]; }; + martini = derive2 { name="martini"; version="1.20.0"; sha256="1vh4ki2cqxz1b95kr4gw7y9in1gik75kkwkp2wj80jsf20y5h74f"; depends=[igraph Matrix memoise Rcpp RcppEigen snpStats]; }; + maser = derive2 { name="maser"; version="1.18.0"; sha256="1ma5d1i56gw8hm2pgvzzvmdd1cm2xb42rgf5lb6sf4v47yzlyb9f"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; + maskBAD = derive2 { name="maskBAD"; version="1.44.0"; sha256="1rrb1d6pj8mmljv8cj0frmacbrafgnqvfncfavmrcmz09xd6j1zn"; depends=[affy gcrma]; }; + massiR = derive2 { name="massiR"; version="1.36.0"; sha256="14yqwr8h526jkv1dxljpdnk2qxmy4s9q0vvczxazr75srynj0krx"; depends=[Biobase cluster diptest gplots]; }; + mastR = derive2 { name="mastR"; version="1.0.0"; sha256="1pdyydg6sg6x9wgglnpqrns9ga6dgvp09h4b7x0b7sg6n57abxp7"; depends=[AnnotationDbi Biobase dplyr edgeR ggplot2 ggpubr GSEABase limma Matrix msigdb org_Hs_eg_db patchwork SeuratObject SingleCellExperiment SummarizedExperiment tidyr]; }; + matchBox = derive2 { name="matchBox"; version="1.42.0"; sha256="10h60d41d7r1v26k8kgmvpxygviwfgyr6hlxmamb57h18p4nnm73"; depends=[]; }; + matter = derive2 { name="matter"; version="2.2.0"; sha256="0h28g8z0bf4gz85vyij19qp9lk9mng68cskylpmp0qvw0m3z9c05"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; }; + mbOmic = derive2 { name="mbOmic"; version="1.3.0"; sha256="079qs5apyqli7h16c6drmhibmc356rnllxks5ddfnnq7hdzmhdbw"; depends=[cluster clusterSim data_table doParallel igraph psych visNetwork WGCNA]; }; + mbQTL = derive2 { name="mbQTL"; version="1.0.0"; sha256="0qibg62q6bnng354g7c4nxmz1q8dxsbd3cq7k6ca0hyc8fgnc8lk"; depends=[broom dplyr ggplot2 MatrixEQTL metagenomeSeq pheatmap readxl stringr tidyr]; }; + mbkmeans = derive2 { name="mbkmeans"; version="1.16.0"; sha256="0c48ycgba1m10p1w2qz9r7yxw15nqzlz8fp44d6lbrvj3svmgjwi"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment]; }; + mdp = derive2 { name="mdp"; version="1.20.0"; sha256="06sald5hf4xxl3sayr45gmhsiziy520m7hxgmk63lblg5a7a5fwm"; depends=[ggplot2 gridExtra]; }; + mdqc = derive2 { name="mdqc"; version="1.62.0"; sha256="0y35z9sw3h77a5g4ah0fxrk5xh7irdw9z0y2jhh6dp0xxcqh6i0k"; depends=[cluster MASS]; }; + megadepth = derive2 { name="megadepth"; version="1.10.0"; sha256="1zzhgfnrr3r5ismbbj9jcqss8mr8ll6p4d3z026ya2khb0i7clc7"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; }; + memes = derive2 { name="memes"; version="1.8.0"; sha256="1b3biljsb6y2xsa423gk1xznfhygywmls5nhisqxmv9vx3m0c1nr"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; }; + meshes = derive2 { name="meshes"; version="1.26.0"; sha256="1g18vh9wcfl3a2qml6c1j7jrlfkz14ph0w39jvdr9mgc4gd5x8qy"; depends=[AnnotationDbi AnnotationHub DOSE enrichplot GOSemSim MeSHDbi yulab_utils]; }; + meshr = derive2 { name="meshr"; version="2.6.0"; sha256="0sggf817in3zyx8yv5b3xdsmmqkan5n07skjjv40lrrvb742jz47"; depends=[BiocGenerics BiocStyle Category fdrtool knitr markdown MeSHDbi rmarkdown RSQLite S4Vectors]; }; + messina = derive2 { name="messina"; version="1.36.0"; sha256="0m9yjwsgbxnwrj1c73bnwgbazad0yplpgz07nlgxh4g236kcsibh"; depends=[foreach ggplot2 plyr Rcpp survival]; }; + metaCCA = derive2 { name="metaCCA"; version="1.28.0"; sha256="1fnpc43andwk0hjvb355zllay3vzd1fq3d2y56z1gghn048h5l2l"; depends=[]; }; + metaMS = derive2 { name="metaMS"; version="1.36.0"; sha256="1b4qfz99kihprzfrm5xz9sv5r8r4xkcr457vwh0wwxnx65ym6zph"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; + metaSeq = derive2 { name="metaSeq"; version="1.40.0"; sha256="0yd5sz6xvvinchyhgnn3mcd4yjpj411jyfi3084i5qsx9axmxsip"; depends=[NOISeq Rcpp snow]; }; + metabCombiner = derive2 { name="metabCombiner"; version="1.10.0"; sha256="1gyfk0jjpmc57vmwir0lzn7cbk0lpwb8c2yvziwk96cx69l6q55s"; depends=[caret dplyr matrixStats mgcv rlang S4Vectors tidyr]; }; + metabinR = derive2 { name="metabinR"; version="1.2.0"; sha256="0chdzqz8457g5ivrxpqvsx13nkrwbi88691d0f3z5afz12wmd5jk"; depends=[rJava]; }; + metabolomicsWorkbenchR = derive2 { name="metabolomicsWorkbenchR"; version="1.10.0"; sha256="0y1iwmkr118yjqg1inmzs7vbkbz1jpj8mlz80np37c2xjnpf2b91"; depends=[data_table httr jsonlite MultiAssayExperiment struct SummarizedExperiment]; }; + metabomxtr = derive2 { name="metabomxtr"; version="1.34.0"; sha256="1zkaf01d6nsrppmj8398ylhw8vczb96lhczg12ml37hcf2m6axdk"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; + metagene = derive2 { name="metagene"; version="2.31.0"; sha256="0kydqb2g1xbkwk5g738f1pyx1hcfmym3z101vawvcjmmgld3kcp8"; depends=[BiocParallel data_table EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats purrr R6 Rsamtools rtracklayer stringr]; }; + metagene2 = derive2 { name="metagene2"; version="1.16.0"; sha256="18m4drdp8ir0g6jzbsnq4afd9667q47csw3zfj1q1m6faldn66ys"; depends=[BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; }; + metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.42.0"; sha256="0293c531l0sjz8qxy7nrajfl081v9df0af9242017msbvyszq6wk"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; }; + metahdep = derive2 { name="metahdep"; version="1.58.0"; sha256="06bjfckh6608l777ghzqg3ckvgarldyi9dsckk10kqmvk402k1gz"; depends=[]; }; + metapod = derive2 { name="metapod"; version="1.8.0"; sha256="0lr2sgbgdbqq626nsm3vyhghs8nalg5cxycr4cwsqh9nqrmip3wa"; depends=[Rcpp]; }; + metapone = derive2 { name="metapone"; version="1.6.0"; sha256="00653kakwdvf53hh7lqc9pfddh595l9qd0y6hw6ww9k1qnn1j4gz"; depends=[BiocParallel fdrtool fgsea fields ggplot2 ggrepel markdown]; }; + methInheritSim = derive2 { name="methInheritSim"; version="1.22.0"; sha256="0x5card8vx8zpr0227qla9ph4nvmmghvvd6wf4157zk7v1zz7rp4"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; + methimpute = derive2 { name="methimpute"; version="1.22.0"; sha256="17h05qg3srdvdb772axfnmc08k11nkqwvjwv10bcmk4aq8i34d1h"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; + methrix = derive2 { name="methrix"; version="1.14.0"; sha256="166rxa7amq2hkn65d3jryd955nkr9h3lj54rf85gssw6mfdkkfm1"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array IRanges matrixStats rtracklayer SummarizedExperiment]; }; + methylCC = derive2 { name="methylCC"; version="1.14.0"; sha256="0gbkahdickin28va3k1dqwnnkd39jm3g9pg511jws8l5k0h90rl7"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; }; + methylGSA = derive2 { name="methylGSA"; version="1.18.0"; sha256="16hhj1g0097nraw721ifxgxzzjy8hkp7zhac670vy0066gqyq5rr"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; }; + methylInheritance = derive2 { name="methylInheritance"; version="1.24.0"; sha256="0cgnavs12qkqbkfnmf60fvms7g6sz634gis9i190hnz6bgjs0b06"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; + methylKit = derive2 { name="methylKit"; version="1.26.0"; sha256="1qi4gwlxsxr4cgs8s12qybrs89vr79xwd7n9in1af3hyn0swikn1"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; + methylMnM = derive2 { name="methylMnM"; version="1.38.0"; sha256="0d5ymviplwl6mfhndydjhmzhj38sh15pdyzjgp3jp7ybppar5waz"; depends=[edgeR statmod]; }; + methylPipe = derive2 { name="methylPipe"; version="1.33.1"; sha256="1dr0gj8sf0ak8b2x4m612xr54nv8m71i280iv3vhz666kf56fk5x"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; + methylSig = derive2 { name="methylSig"; version="1.12.0"; sha256="1k7nm84k870cqzr4dvi5vfz3sphs091l0a677kdk4gzs5nkg5818"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + methylclock = derive2 { name="methylclock"; version="1.6.0"; sha256="1l8a24xpf8a5n49zcnidv2jb22rjza80v1ysxa10689w27lhf8h7"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr gridExtra impute methylclockData minfi PerformanceAnalytics planet preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; + methylscaper = derive2 { name="methylscaper"; version="1.8.0"; sha256="1hzlhqailybv1m1nz4rn2qj89wgbm2zm181qw8vl8jpmxbfflkhm"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; + methylumi = derive2 { name="methylumi"; version="2.46.0"; sha256="1aa0pwjyp2p9a4mx4n4qw88ndgrj56p669yzdkd7hxhc3x55nzlf"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; + mfa = derive2 { name="mfa"; version="1.22.0"; sha256="1rc88ilaqhnbachajc0nagmj865g9w8ny1n9n094qiad9j47nfh4"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; + mgsa = derive2 { name="mgsa"; version="1.48.0"; sha256="08szkzkdqzll4ki75lvkkvpz6kcv54863cicw376z73fd3x4bwgd"; depends=[gplots]; }; + miQC = derive2 { name="miQC"; version="1.8.0"; sha256="1vjn700zrdnxva6nk7l9pilm1h5v95xsggsrsxvn5wq8pxfwdhkw"; depends=[flexmix ggplot2 SingleCellExperiment]; }; + miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.24.0"; sha256="04yjfi670lqk4c254isadzaj1mp514i4ns9h7mwdyvagfq6vhsvw"; depends=[]; }; + miRLAB = derive2 { name="miRLAB"; version="1.30.0"; sha256="07fpl377j1bsxqjbwsn35scyj7k4gv456z3i3q8q15rl5rlla35m"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl stringr SummarizedExperiment TCGAbiolinks]; }; + miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.28.0"; sha256="0g95i1ay88952crlw79w1qc52mp4xz91h0lrab3fs6lr7hjsy5m2"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; + miRNApath = derive2 { name="miRNApath"; version="1.60.0"; sha256="0hl12p3pc7738qwrwzj8pmph0g9n88dbw0mrpm6apygkjxk2id3y"; depends=[]; }; + miRNAtap = derive2 { name="miRNAtap"; version="1.34.0"; sha256="0wnc59q9n1jz6wmh3hw8y3k3iaj7k2w68hiy9hjfarjypy4p20nz"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; + miRSM = derive2 { name="miRSM"; version="1.18.0"; sha256="1slb957ns31zxcnbfs5hp7nx7ypfh5as26s4ih5rvl153a5msd1k"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; }; + miRcomp = derive2 { name="miRcomp"; version="1.30.0"; sha256="147gng7la8z8hwnkqaf6q9ypxk5b24zbipfvn3ns3gfsafsybv7q"; depends=[Biobase KernSmooth miRcompData]; }; + miRmine = derive2 { name="miRmine"; version="1.22.0"; sha256="1d0ni3lavpiv2qzwlmrsjym75cip3i9q1bg9rwa04h61rz2smylg"; depends=[SummarizedExperiment]; }; + miRspongeR = derive2 { name="miRspongeR"; version="2.4.0"; sha256="1mzh0cjm2sbcxw3wgfa6yg98ynl74x41g15vsf54n1m1ys5s7xk0"; depends=[clusterProfiler corpcor doParallel DOSE foreach igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA SPONGE survival]; }; + mia = derive2 { name="mia"; version="1.8.0"; sha256="1p78yacx0cgihva7m2n3vnll5w4b47vl98hy12pq9rnmhk6r591z"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; + miaSim = derive2 { name="miaSim"; version="1.6.0"; sha256="0bxga2m275fgyjvwscvnd51swjjvs84z6kzy5y4jcvbz5ai4c0mi"; depends=[deSolve MatrixGenerics poweRlaw S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; + miaViz = derive2 { name="miaViz"; version="1.8.0"; sha256="131wn71754h722x5yfxk53qv2zbcf81sfal6pznb8dr204ixhhzz"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; + microRNA = derive2 { name="microRNA"; version="1.58.0"; sha256="0v243lnnr9d48dc5vgnvq2idh7fdmba5wjccg2wcjvw02vv8c48f"; depends=[Biostrings]; }; + microSTASIS = derive2 { name="microSTASIS"; version="1.0.0"; sha256="1ma7jkd7wjg2z6zchz1jvvjqa31q2lw13vqxhs9vxyfbshjhrcfb"; depends=[BiocParallel ggplot2 ggside rlang stringr TreeSummarizedExperiment]; }; + microbiome = derive2 { name="microbiome"; version="1.22.0"; sha256="120wyjv2r9cbjgxbp70nzf249hai8cqn59gcbgwnazynfy5ih1w8"; depends=[Biostrings compositions dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; + microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.14.0"; sha256="1gk8wa3lndchfdl1fdcq8kn3blky0wjr0b845dy8f1s0bv29ar5j"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; + microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.10.0"; sha256="1zsxwfyz395475ngr71i14s29ybx4spaah3b7gy4xi0zfgq6mxzq"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; + microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.6.0"; sha256="0zgfhvbwwr4w5gzrh924ih4r0fx0s03i1d6dlgyxg5gjnp9lq709"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics BiocParallel biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC pROC purrr rlang S4Vectors tibble tidyr tidytree vegan yaml]; }; + midasHLA = derive2 { name="midasHLA"; version="1.8.0"; sha256="02axv74d3mxm739asq5i5bkm7kykrdrhnpzxjliasvmn9h1anixl"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; + miloR = derive2 { name="miloR"; version="1.8.1"; sha256="073s239aqkixsrarqxfv4nmpcj025k32nhql63qaxrkrvvdd34di"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; + mimager = derive2 { name="mimager"; version="1.24.0"; sha256="1sparnf286zhspd3ly02ydxxspb1pn8qszng9lcv6prx70vmig4b"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; + mina = derive2 { name="mina"; version="1.8.0"; sha256="1dwax15n9x2hjip3p8j34kmx2dyxf6zx8s1s1gq4988185jwp5x3"; depends=[apcluster biganalytics bigmemory foreach ggplot2 Hmisc MCL parallelDist plyr Rcpp RcppArmadillo RcppParallel reshape2 RSpectra stringr]; }; + minet = derive2 { name="minet"; version="3.58.0"; sha256="04ll8nqhmyj2v12n2xskia8dh5px8mzj8fbyw1pzahk9vp085gkr"; depends=[infotheo]; }; + minfi = derive2 { name="minfi"; version="1.46.0"; sha256="18b9yg9hnnm1saaiprm2hj86aajjwm1zwvpj0yadfa3s811pw4nq"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; + mirIntegrator = derive2 { name="mirIntegrator"; version="1.30.0"; sha256="0rhbvz7nd1zr2il7k493d78cndlx7ndb4llkigpgj91lq259b9c4"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; + mirTarRnaSeq = derive2 { name="mirTarRnaSeq"; version="1.8.0"; sha256="0b7hmaw8fmhjg3rrkah0j0jwa18yhgzkpbsys16ic07qd9zjdd45"; depends=[assertthat caTools corrplot data_table dplyr ggplot2 MASS pheatmap pscl purrr R_utils reshape2 viridis]; }; + missMethyl = derive2 { name="missMethyl"; version="1.34.0"; sha256="1jvrdr57mv93pcbyazcg1bcx1zd0kp72hi1if839gw54hk3igs3h"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; }; + missRows = derive2 { name="missRows"; version="1.20.0"; sha256="05kbz5incgzikivbw0ylbrm7h9sbn6wn9c9hz6ic756kb95pdyy0"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; + mistyR = derive2 { name="mistyR"; version="1.8.0"; sha256="1rqhv4kmzdk6i4ivj9hhvgkxr0bv45ag7ybs8f4hh34q9wpqw9p0"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 purrr R_utils ranger readr ridge rlang rlist stringr tibble tidyr tidyselect withr]; }; + mitch = derive2 { name="mitch"; version="1.12.0"; sha256="04349x16q67a3arnvk65q3znm9lz54bd1wyv1fjqbmqzbzyizx4j"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra kableExtra knitr MASS plyr reshape2 rmarkdown]; }; + mitoClone2 = derive2 { name="mitoClone2"; version="1.6.0"; sha256="1ck982gqs6skzjsl83fj0621ljnamzhz7mg34r7bvp2bj8q7psfh"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; }; + mixOmics = derive2 { name="mixOmics"; version="6.24.0"; sha256="0dqndpmi56g772sra49vdrkjs4m9h2gzimwv3bwmw2l0krh2ax8s"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; + mnem = derive2 { name="mnem"; version="1.16.0"; sha256="0lggww83lsa23wb968khh9kkgbza0g77y1c8bsiim170d2cgsnd9"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; + moanin = derive2 { name="moanin"; version="1.8.0"; sha256="11hrk46c8h4ffiy3znqiqf8ilfdbmkphq5wss37d8c7zsyj4n9zg"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; + mogsa = derive2 { name="mogsa"; version="1.34.0"; sha256="09v4gwz8w84lfhsqgk3gywjgls3n7dn4z07d4bj5m0f7zcz3kpii"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; + monaLisa = derive2 { name="monaLisa"; version="1.6.0"; sha256="16fkswcl60x110nsmm0znzrc2zf6x89gk4b3ragz43f1vq9msbdc"; depends=[BiocGenerics BiocParallel Biostrings BSgenome circlize ComplexHeatmap GenomeInfoDb GenomicRanges glmnet IRanges S4Vectors stabs SummarizedExperiment TFBSTools vioplot XVector]; }; + monocle = derive2 { name="monocle"; version="2.28.0"; sha256="05pix638s4hkig2i048m5jjhvw6cqr2b5qvfkk14i64p9kpifmqj"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree dplyr fastICA ggplot2 HSMMSingleCell igraph irlba leidenbase limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; + mosaics = derive2 { name="mosaics"; version="2.38.0"; sha256="0q5n0fb2fkgvhr8l7jf49r2967pvxcfil3mjha1lm44n0fvcahx0"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; + mosbi = derive2 { name="mosbi"; version="1.6.0"; sha256="1ppl36xzxhggqvdn9ns1j7ia2r0ksv8y51fg3adnnr9nlzs3plhr"; depends=[akmbiclust BH biclust fabia igraph isa2 QUBIC RColorBrewer Rcpp RcppParallel xml2]; }; + motifStack = derive2 { name="motifStack"; version="1.44.1"; sha256="1g46cxn1h3cqr0yrj6ancshzygiqr9finf1vmmig3h9g0ijgr5lz"; depends=[ade4 Biostrings ggplot2 htmlwidgets TFBSTools XML]; }; + motifbreakR = derive2 { name="motifbreakR"; version="2.13.7"; sha256="0j4i3059n0g9n73nyxaca7pd4hncvgp0ww63i3kyp5pnvwycsax2"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; + motifcounter = derive2 { name="motifcounter"; version="1.24.0"; sha256="1m1ypf0d0r0a0vzmyqsd3w1xdvz71vykr682bxag08md6g7naqz9"; depends=[Biostrings]; }; + motifmatchr = derive2 { name="motifmatchr"; version="1.22.0"; sha256="0vqsxfbrxs25xr27vsr5syqjn6fwvn5dw0g76w4rdqk5d08p56ci"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; + mpra = derive2 { name="mpra"; version="1.22.0"; sha256="0n0fv56sd7n56ccyklpj2gyf2mabxsvjm0i6lbc80n33am068a5q"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; + msImpute = derive2 { name="msImpute"; version="1.10.0"; sha256="1mnzmdjsd9xq3yinzr79ksl8722920p426g39rqqj0lmfzknf235"; depends=[data_table dplyr FNN limma matrixStats mvtnorm pdist reticulate scran softImpute tidyr]; }; + msPurity = derive2 { name="msPurity"; version="1.26.0"; sha256="09svi2502dxljqpfvwgxvsn32qkkh5b059cvggaqdfc8az0a1n0x"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 magrittr mzR plyr Rcpp reshape2 RSQLite stringr]; }; + msa = derive2 { name="msa"; version="1.32.0"; sha256="08fg4y8rmkvilsx2hxqwxa90p2wqrl4iyndp7wfjicvplmaxp708"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; + msgbsR = derive2 { name="msgbsR"; version="1.24.0"; sha256="1pnm3z7r0lphba7sj1dll19p0pj7mkz5s1jmnahy6q3y2ic1n91g"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; + mslp = derive2 { name="mslp"; version="1.2.0"; sha256="11mkh7mnrbyazra715lblkgvsq2x9v4g75c483cncbhnk1r24058"; depends=[data_table doRNG fmsb foreach magrittr org_Hs_eg_db pROC randomForest RankProd]; }; + msmsEDA = derive2 { name="msmsEDA"; version="1.38.0"; sha256="108azzd6ibcgb1gqgcrz4shk3rdr3vfpzy0z6zknlsxwz7sbcnfi"; depends=[gplots MASS MSnbase RColorBrewer]; }; + msmsTests = derive2 { name="msmsTests"; version="1.38.0"; sha256="1y3nklhlib2l9smcl6slv1653vyg9ip29if286l59rjrdwh50cwa"; depends=[edgeR msmsEDA MSnbase qvalue]; }; + msqrob2 = derive2 { name="msqrob2"; version="1.8.0"; sha256="0sp92ga4c9lp0l4ihhxk03dyx809crzhi29ijscxqmvkq4vi3dv6"; depends=[BiocParallel codetools limma lme4 MASS Matrix MultiAssayExperiment purrr QFeatures SummarizedExperiment]; }; + multiClust = derive2 { name="multiClust"; version="1.30.0"; sha256="0rzn9m4gm96x5jsw0hcnnwkpagkyyd8s88dz9jlhkrygq7drzadx"; depends=[amap cluster ctc dendextend mclust survival]; }; + multiGSEA = derive2 { name="multiGSEA"; version="1.10.0"; sha256="002w9r76m5ch002az1abpbiybkkxyfbqi458hfahmn45735p3zfr"; depends=[AnnotationDbi dplyr fgsea graphite magrittr metaboliteIDmapping metap rappdirs rlang]; }; + multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.18.0"; sha256="0mm9siyza60sc8w8r3c4lihlyq2micipq1m6b8in9z7bm8l39xkv"; depends=[aggregation BiocParallel data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare pbapply pheatmap qqman]; }; + multiMiR = derive2 { name="multiMiR"; version="1.22.0"; sha256="0xg6wq022ys23za91di6w655lia4gh1ij2f9hrn9vp937czwlzjv"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; + multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.24.0"; sha256="129k094ml403w25k3kipzbavx78p14jxq40a8d733qyqp8mcnlrs"; depends=[doParallel foreach SummarizedExperiment]; }; + multiSight = derive2 { name="multiSight"; version="1.7.0"; sha256="1v2ml1qh250lidm5a0xw4b3xbxd2as86p703qn5s8m1xi6l89b9c"; depends=[anyLib biosigner caret clusterProfiler config DESeq2 dplyr DT easyPubMed enrichplot ggnewscale golem htmltools igraph infotheo metap mixOmics networkD3 ppcor R6 ReactomePA rmarkdown rWikiPathways shiny shinydashboard stringr]; }; + multicrispr = derive2 { name="multicrispr"; version="1.10.1"; sha256="05ansjg6hh5wamj3nb7h941snjiz4g106pjvi45wsphlsqm98hhr"; depends=[assertive BiocGenerics Biostrings BSgenome CRISPRseek data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 karyoploteR magrittr plyranges Rbowtie reticulate rtracklayer stringi tidyr tidyselect]; }; + multiscan = derive2 { name="multiscan"; version="1.60.0"; sha256="0wrh6fg6zr4chiyipc8pqc9f43sxabs17qs1p4mb2d7yk9ga7xxp"; depends=[Biobase]; }; + multtest = derive2 { name="multtest"; version="2.56.0"; sha256="19c6l8pkyp0m2zdzhr81cnmx5lqf501sap9h6ig5iiv66sf2ysmz"; depends=[Biobase BiocGenerics MASS survival]; }; + mumosa = derive2 { name="mumosa"; version="1.8.0"; sha256="0cd8yrlm11zymg9cd9vqazkzrnmyzav0vkr3z7q4cxkz31vrm82j"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; }; + muscat = derive2 { name="muscat"; version="1.14.0"; sha256="1jcy07m8ywpgsmwkq6s7zj32w7gvxqj52j562irv2h2q429awdxk"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; + muscle = derive2 { name="muscle"; version="3.42.0"; sha256="0q49y30zx9g488bvq934r0gfg3d2jikf43jmvx9zzb7xyzj9qh30"; depends=[Biostrings]; }; + musicatk = derive2 { name="musicatk"; version="1.10.0"; sha256="1yfiapiy4j8i9v6j1pyvk698lqa1zr1mzrlvxlk3vnlg2vgf92c5"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap data_table decompTumor2Sig deconstructSigs dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra gtools IRanges maftools magrittr MASS matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors shiny stringi stringr SummarizedExperiment tibble tidyr tidyverse topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation]; }; + mygene = derive2 { name="mygene"; version="1.36.0"; sha256="1qwhl599626z1l0psis7v4d848jbjvajplam136pwwfck2vh1k0b"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; + myvariant = derive2 { name="myvariant"; version="1.30.0"; sha256="0jdr1krci554a43pjz09nsh8dn1vl7f4y71jifcgj4xv6250wlc3"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; + mzID = derive2 { name="mzID"; version="1.38.0"; sha256="0grl7798vnpxb6nw98zj0lbvsrhkjfsyn0y15bi4v7vhyhkk26xm"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; + mzR = derive2 { name="mzR"; version="2.34.0"; sha256="0dz9wqaawhkvswv4035xknlicia0m79r8n666s1yf59cfpmdqgs3"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib]; }; + nanotatoR = derive2 { name="nanotatoR"; version="1.16.0"; sha256="1m3nlpkmpb8vzp0r0rczz2p5qlc34yvjagrbvhw78awfn9b57y6b"; depends=[AnnotationDbi curl dplyr GenomicRanges hash httr knitr openxlsx org_Hs_eg_db rentrez rlang stringr testthat tidyverse VarfromPDB XML XML2R]; }; + ncGTW = derive2 { name="ncGTW"; version="1.14.0"; sha256="16mcmjm6b4kqv3997nwzylp23b9s6h496pi25xqrawmgzpii8kzc"; depends=[BiocParallel Rcpp xcms]; }; + ncRNAtools = derive2 { name="ncRNAtools"; version="1.10.0"; sha256="0dgznpmy794sa1a4nfi8jyfn9hhwhsf9wdjslhfwpcgmfy7dzmfa"; depends=[GenomicRanges ggplot2 httr IRanges S4Vectors xml2]; }; + ncdfFlow = derive2 { name="ncdfFlow"; version="2.46.0"; sha256="0nrj4g02kx763wb70fzvhidmzp82gr1g3fp1aa1bv34cj4lnp47q"; depends=[BH Biobase BiocGenerics cpp11 flowCore Rhdf5lib zlibbioc]; }; + ndexr = derive2 { name="ndexr"; version="1.22.0"; sha256="1gh93wirms6hpp1dg2k9v2jnansyf2wr82dfsrfgv8pha1740c9v"; depends=[httr jsonlite plyr RCX tidyr]; }; + nearBynding = derive2 { name="nearBynding"; version="1.10.0"; sha256="05h2bjc29bispy83r5mrhwpafxyd5vgc4z50ffix4xffiq0yzm71"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges ggplot2 gplots magrittr matrixStats plyranges R_utils rlang Rsamtools rtracklayer S4Vectors transport TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + nempi = derive2 { name="nempi"; version="1.8.0"; sha256="1d7w0gcljhs80sd0xb11v8rh4xakv6l6nrihz3vh07nlcprif63l"; depends=[e1071 epiNEM matrixStats mnem naturalsort nnet randomForest]; }; + netDx = derive2 { name="netDx"; version="1.12.0"; sha256="0ypgf1jvj24y4k33ykzpm51c8dlf0vddqc4g91bhxa7722yknng7"; depends=[bigmemory BiocFileCache combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet httr igraph IRanges MultiAssayExperiment plotrix pracma rappdirs RColorBrewer reshape2 ROCR Rtsne S4Vectors]; }; + netOmics = derive2 { name="netOmics"; version="1.6.0"; sha256="1cxvb4viqw2r88560gv1jra5jvvzp6liickmnwgi313kws0mzgvl"; depends=[AnnotationDbi dplyr ggplot2 GO_db gprofiler2 igraph magrittr minet purrr RandomWalkRestartMH tibble tidyr]; }; + netSmooth = derive2 { name="netSmooth"; version="1.20.0"; sha256="1sg9ksdgadjabay4zpws507fscfvn4hknxm0r1fxr552jgr3cgzr"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; }; + netZooR = derive2 { name="netZooR"; version="1.4.0"; sha256="0cj33d5g5xspvg939mn6vyacwrf8bszjbybzcpwwbdyj7267r9sl"; depends=[AnnotationDbi assertthat Biobase data_table doParallel dplyr foreach ggdendro ggplot2 GO_db GOstats gplots igraph MASS Matrix matrixcalc matrixStats nnet org_Hs_eg_db pandaR penalized RCy3 reshape reshape2 reticulate STRINGdb tidyr vegan viridisLite yarn]; }; + netboost = derive2 { name="netboost"; version="2.8.0"; sha256="0x297frzhqrxh673sbpnj41jyn568pmi1dwy8s1l156cjl7yid76"; depends=[BiocStyle colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; }; + nethet = derive2 { name="nethet"; version="1.32.0"; sha256="1m7gbb0r9v2clhmsk99f0jr1zv4ks68g3jjsq3wqp0vp8x2zbhrc"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; }; + netprioR = derive2 { name="netprioR"; version="1.26.0"; sha256="0x1yxp207vky17gblr577mz171fwcqjh9qzd5s07skbz2pxsz07b"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; + netresponse = derive2 { name="netresponse"; version="1.60.0"; sha256="192g4rcyazzxpimkqyxh5y1s1g3i2li4qskh5160yaxp4x31vs9n"; depends=[BiocStyle ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz rmarkdown]; }; + ngsReports = derive2 { name="ngsReports"; version="2.2.2"; sha256="13gc02kynbcmphwp06xw3f4fjvgzqrgh2viph2l6gxg3pqivhga5"; depends=[BiocGenerics Biostrings checkmate dplyr DT forcats ggdendro ggplot2 jsonlite lifecycle lubridate pander patchwork plotly readr reshape2 rlang rmarkdown scales stringr tibble tidyr tidyselect zoo]; }; + nnNorm = derive2 { name="nnNorm"; version="2.64.0"; sha256="19nywnq17bijxzxcpmmiq8q9jbjskzw2bi0g33zw3g9ksrg3d758"; depends=[marray nnet]; }; + nnSVG = derive2 { name="nnSVG"; version="1.4.1"; sha256="171c246cj610hh4ifr0s4g4k7r3d057lzyh1jvwnr80gs2jfcw3s"; depends=[BiocParallel BRISC Matrix matrixStats SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + nondetects = derive2 { name="nondetects"; version="2.30.0"; sha256="0grz6hky7598kk7mm3amgda5n2bhjmwld0f06zsbcdjpbsr0rchc"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; + normalize450K = derive2 { name="normalize450K"; version="1.28.0"; sha256="0im1q0cnmmk347ql41d8apsshxqp357ksnaf063ybw8lgal0fzv2"; depends=[Biobase illuminaio quadprog]; }; + normr = derive2 { name="normr"; version="1.26.0"; sha256="1l1xj3yz2xbi2rd28zj4gbjjdca0x0z4s4v2gqdg6zn87yz318dm"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; + npGSEA = derive2 { name="npGSEA"; version="1.36.0"; sha256="16sr0582ln6qq5yljdp9admfg1i4jziz74cksphqj1a4ic31bwn4"; depends=[Biobase BiocGenerics GSEABase]; }; + nuCpos = derive2 { name="nuCpos"; version="1.18.0"; sha256="0vina93gkwm7q53287qnjykpijcyr31i0vdvpzh5rm3wqd16ah16"; depends=[]; }; + nucleR = derive2 { name="nucleR"; version="2.32.0"; sha256="0fzgapzy1rgsmh8lbldk8d43h1dn916kfgsq791mc7yj21kdycqj"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; + nucleoSim = derive2 { name="nucleoSim"; version="1.28.0"; sha256="1vp2aj34an5a6r7kw6qni847r7xilrmq2vz17mg5z4ryw30njbcy"; depends=[IRanges S4Vectors]; }; + nullranges = derive2 { name="nullranges"; version="1.6.1"; sha256="0sl9qp3dqkblxjr8qfhqxzh84qb10brxvd41rxdhh8aqh0g8qjsg"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges ks plyranges progress rlang S4Vectors scales]; }; + occugene = derive2 { name="occugene"; version="1.60.0"; sha256="1f1qp0vrvnn6ajzj61pwn5sb3ihn2w9270ixjzcfr4y30za4sl7h"; depends=[]; }; + octad = derive2 { name="octad"; version="1.2.0"; sha256="0la9jgp3r3x8gnz7i06fapw0fvypp07x9rbh5f7p5plzgn5d9lkb"; depends=[AnnotationHub Biobase data_table DESeq2 dplyr EDASeq edgeR ExperimentHub foreach ggplot2 GSVA htmlwidgets httr limma magrittr octad_db plotly reshape2 Rfast rhdf5 RUVSeq S4Vectors]; }; + odseq = derive2 { name="odseq"; version="1.28.0"; sha256="1r8ah7m3sdn64cpjvcv8fzg2z441zqwm597a4qbnaj5rbrf9r19q"; depends=[kebabs mclust msa]; }; + oligo = derive2 { name="oligo"; version="1.64.1"; sha256="0gs26h0hm8xlv3aayz4w0vwmw15x5602g02728spsm3n0qra3b1j"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; + oligoClasses = derive2 { name="oligoClasses"; version="1.62.0"; sha256="0i745q2kx7rdfbkz3cwzzp1m4diny25mc301vy0sh4z5lpi5mdm8"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; + omada = derive2 { name="omada"; version="1.1.0"; sha256="0qlz0frs48xapy7nvhfdk662npybgk8zfkj16j3ngz3rgzhn3vcg"; depends=[clValid diceR dplyr fpc ggplot2 glmnet kernlab pdfCluster Rcpp reshape]; }; + omicRexposome = derive2 { name="omicRexposome"; version="1.22.0"; sha256="0hb16ik58q38s4135j3g6qj6y0iwaiq5wrhw6awbif7s0s3c2567"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; + omicade4 = derive2 { name="omicade4"; version="1.40.0"; sha256="086nh0m82gjlxyg6i230wpkin4zc3a7cfla0qzvj28h0n8irkm5r"; depends=[ade4 Biobase made4]; }; + omicplotR = derive2 { name="omicplotR"; version="1.20.0"; sha256="11glqpdxc54wy03d9v8ggdaxcnxwz9fbxw7k33d0fc984nrqh7jd"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; }; + omicsPrint = derive2 { name="omicsPrint"; version="1.20.0"; sha256="1qfc0an6nilmh4hb3jjz8kwz7qyhr1m2bkqzzw83nnwlp2dc84dl"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; + omicsViewer = derive2 { name="omicsViewer"; version="1.4.0"; sha256="10xpm33d0xl03a07a16jk0qvdaynwsrhl8qvikn1fqbvrsgansb2"; depends=[beeswarm Biobase curl DT fastmatch fgsea flatxml ggplot2 ggseqlogo htmlwidgets httr Matrix matrixStats networkD3 openxlsx plotly psych RColorBrewer reshape2 ROCR RSQLite S4Vectors shiny shinybusy shinycssloaders shinyjs shinythemes shinyWidgets stringr SummarizedExperiment survival survminer]; }; + ompBAM = derive2 { name="ompBAM"; version="1.4.0"; sha256="1z9wpsi6492l9hl5csv1kgz815cw6817ns7x3ndpz7ya4sfdrmws"; depends=[Rcpp zlibbioc]; }; + oncomix = derive2 { name="oncomix"; version="1.22.0"; sha256="1fs50j8f6xxlnsxxdnckd6i7j9wcfh90hf7hicpra5v201qnp68c"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; + oncoscanR = derive2 { name="oncoscanR"; version="1.2.0"; sha256="1q68zh5xcybixmmn1n2s5aqf0ya9ffk5x5qa8a5nrsiv54h7qz1z"; depends=[GenomicRanges IRanges magrittr readr S4Vectors]; }; + onlineFDR = derive2 { name="onlineFDR"; version="2.8.0"; sha256="0dnfzjzcxb9r1f8vknplp404njwwbvfw5q2ykvbvv4k6r2iifp95"; depends=[progress Rcpp RcppProgress]; }; + ontoProc = derive2 { name="ontoProc"; version="1.22.0"; sha256="0kyjcfs42a3h1m5r56pyxgp3h0aia2ykx5dhykqcwhqnl3iwzqyd"; depends=[AnnotationHub Biobase BiocFileCache dplyr DT graph igraph magrittr ontologyIndex ontologyPlot Rgraphviz S4Vectors shiny SummarizedExperiment]; }; + openCyto = derive2 { name="openCyto"; version="2.12.0"; sha256="0z0p09mkap1jqlq1x33i2ik87pbhwq85xgqyfsx4r360nhv06pna"; depends=[BH Biobase BiocGenerics cpp11 data_table flowClust flowCore flowViz flowWorkspace graph ncdfFlow RBGL RColorBrewer]; }; + openPrimeR = derive2 { name="openPrimeR"; version="1.22.0"; sha256="0lcsnc0ahx3nhmqbz46vsm9pyfknlirjmka6ak89vly71d0xjh5n"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; + openPrimeRui = derive2 { name="openPrimeRui"; version="1.22.0"; sha256="1axdlr8cs1khhlpzf7amkzr6rjx5ikqmlcgwkng2m9qfr6v6lfkf"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; + oposSOM = derive2 { name="oposSOM"; version="2.18.0"; sha256="0wk9zqjgzhy6y240bdrn8j82hpgjpl13b8c3rcvjr2gnvi4l16y6"; depends=[ape Biobase biomaRt fastICA fdrtool graph igraph pixmap png Rcpp RcppParallel RCurl scatterplot3d tsne XML]; }; + oppar = derive2 { name="oppar"; version="1.28.0"; sha256="1g03q6dp52anmwasnd9jssxl22hln89g4rmbgay801f2wgl81sqb"; depends=[Biobase GSEABase GSVA]; }; + oppti = derive2 { name="oppti"; version="1.14.0"; sha256="0yhq61c91j850jqq7n2jfd339lrhawn2716qlis12cq6k3dwhw0b"; depends=[devtools ggplot2 knitr limma parallelDist pheatmap RColorBrewer reshape]; }; + optimalFlow = derive2 { name="optimalFlow"; version="1.12.0"; sha256="0ncyvk8anpcj529cahh10qzx08fp7k4df4ggcj8m5gv1yrmm7i2k"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; }; + orthogene = derive2 { name="orthogene"; version="1.6.0"; sha256="16ll7vpf14025044g0bfkdl344bqic1chki76yjkc58d8pa23w21"; depends=[babelgene data_table DelayedArray dplyr ggplot2 ggpubr ggtree gprofiler2 grr homologene jsonlite Matrix patchwork repmis]; }; + pRoloc = derive2 { name="pRoloc"; version="1.40.1"; sha256="1a0q1714rnlcjjxwhgmrwk544sfi5bxwgjxky5pzai227n4cv00p"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; + pRolocGUI = derive2 { name="pRolocGUI"; version="2.10.0"; sha256="1kpg5ihz6xb8im4ivmsc01cijxwc5m4v9bkifk9kwfwnryayr6vy"; depends=[Biobase BiocGenerics colorspace colourpicker dplyr DT ggplot2 MSnbase pRoloc scales shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets]; }; + packFinder = derive2 { name="packFinder"; version="1.12.0"; sha256="1s4n0p7zfmg5ddy77skbyyn28mjr1iq077lk9ygkl91r02dixqai"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; }; + padma = derive2 { name="padma"; version="1.10.0"; sha256="1ic40ikljwqljc3q55gd9wcnh078gvnz5nn4gdqnk5nfs83dlx7v"; depends=[FactoMineR MultiAssayExperiment S4Vectors SummarizedExperiment]; }; + pageRank = derive2 { name="pageRank"; version="1.10.0"; sha256="0ngf82435m7d869jk76yxvjx1mixg4xclzazfc6g15vzqxl4n1g3"; depends=[GenomicRanges igraph motifmatchr]; }; + paircompviz = derive2 { name="paircompviz"; version="1.38.0"; sha256="106d617b6kc8kkmcxshm8r15nq2lj29mikwylz46vs4hd62pxpza"; depends=[Rgraphviz]; }; + pairedGSEA = derive2 { name="pairedGSEA"; version="1.0.0"; sha256="1vmnhdv4ylha0bsycm6yrfxpiyiqk91r8vlz94al3r52fyih8lg5"; depends=[aggregation BiocParallel DESeq2 DEXSeq fgsea ggplot2 limma S4Vectors SummarizedExperiment sva]; }; + pairkat = derive2 { name="pairkat"; version="1.6.0"; sha256="0i81rxzvl91ilc2i1497h1jlbnpvvd4rmlq0n2ci8kxanibxkmp8"; depends=[CompQuadForm data_table igraph KEGGREST magrittr SummarizedExperiment tibble]; }; + pandaR = derive2 { name="pandaR"; version="1.32.0"; sha256="0x80dkhbb81hpd6vda28h2fsfznd22nccs9q6rckv2qv89f8rmrk"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; + panelcn_mops = derive2 { name="panelcn.mops"; version="1.22.0"; sha256="1g9n92f5k2b07kgzb7k4z75r5nqy8m1g621qxj68pdwwyvdh4sv3"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + panp = derive2 { name="panp"; version="1.70.0"; sha256="0d2nih62gh7m30innyj7cdf4di70jb17k94m4nqa5mfkp49p9wq9"; depends=[affy Biobase]; }; + parglms = derive2 { name="parglms"; version="1.32.0"; sha256="0289pyhqknfdkzypi52014581ndc2pg7flsnbch38wdx1i23nph7"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; + parody = derive2 { name="parody"; version="1.58.0"; sha256="0n2pmpnpwh16hb58v821xn42jm4a7wjsdf6sqxapjjw9w432mjac"; depends=[]; }; + pathRender = derive2 { name="pathRender"; version="1.68.0"; sha256="1a1wlvhgbspwycjdvks6705cj1lh7m79fakgn08b9z9pnk9vxyj9"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; + pathVar = derive2 { name="pathVar"; version="1.30.0"; sha256="1q0m4yb4jvi61f3hl7mpbnl9y0y4pqhspi1gn3wp5lf86j8c40jp"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; + pathifier = derive2 { name="pathifier"; version="1.38.0"; sha256="05adkk8m0c04d0ajvqk9g805py4zx3jmlbd3scdzcflv5sxggg7p"; depends=[princurve R_oo]; }; + pathview = derive2 { name="pathview"; version="1.40.0"; sha256="0mld7vys6s5k8snk1gniph9wkw3726vsx430nhyyr76fp4ps2mks"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; + pathwayPCA = derive2 { name="pathwayPCA"; version="1.15.0"; sha256="1qrqw939vq5vvz7rhimcbw4khw0nd3lygww8ahj7985rw2zbnxjs"; depends=[lars survival]; }; + paxtoolsr = derive2 { name="paxtoolsr"; version="1.34.0"; sha256="0wdz098hjbbvd9sdfiv5w5wdzr9hjabg516vvg4phl6km2jb9xd9"; depends=[httr igraph jsonlite plyr R_utils rappdirs readr rJava rjson XML]; }; + pcaExplorer = derive2 { name="pcaExplorer"; version="2.26.1"; sha256="04r4qsiasbfb0pwqyqmw2w3qdkhgwixwffp1s8hjflwnb63hxzjx"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; + pcaMethods = derive2 { name="pcaMethods"; version="1.92.0"; sha256="14awrgq56s948x74j4iv9k1yy5b7axw1kqzg827y5znjc1i3aqy6"; depends=[Biobase BiocGenerics MASS Rcpp]; }; + pcxn = derive2 { name="pcxn"; version="2.22.0"; sha256="0fk2v28bwi3cdmy9k557pxhr4gplgkdl6l79hgwjd6q8rp46lgzh"; depends=[pcxnData pheatmap]; }; + pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.64.0"; sha256="1w4vhkzdb004p6f7dln6d0zw1xx12k6g4zr011qsn8ds0qcr7c3w"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + peakPantheR = derive2 { name="peakPantheR"; version="1.14.0"; sha256="0nnks04qq1mmn3x406l4chyplmb2wfp2lhx314zrsjbsj16jkzrf"; depends=[bslib doParallel DT foreach ggplot2 gridExtra lubridate minpack_lm MSnbase mzR pracma scales shiny shinycssloaders stringr XML]; }; + peco = derive2 { name="peco"; version="1.12.0"; sha256="0as9afkw14yjvn5j7n0rl0xcd8dd3mbc20rkxq0iqrw30gcpsz28"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; }; + pengls = derive2 { name="pengls"; version="1.6.0"; sha256="1hsa0bm2b5srmzw1wnz1mdr3v9a2ykzlhw5disl5m3s2hcinwa68"; depends=[BiocParallel glmnet nlme]; }; + pepStat = derive2 { name="pepStat"; version="1.34.0"; sha256="0q35l28sdbai25a6ik9qw4jyk2c3zr6qnryqaxa9cvyadyj0zqcj"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; + pepXMLTab = derive2 { name="pepXMLTab"; version="1.34.0"; sha256="1dw9306g7ywfjfyvpqgvhw8vnqxw64kvyb1mv69xvz6irk47s3z7"; depends=[XML]; }; + periodicDNA = derive2 { name="periodicDNA"; version="1.10.0"; sha256="15xxixmzc8c9yidh66v09cmd342n27i65dwxla6bwj8vvxspdwcs"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; + pfamAnalyzeR = derive2 { name="pfamAnalyzeR"; version="1.0.0"; sha256="05y4n5303ma8ncf6gy32wxzk7khqa08dg4c7hnngkjsr2kr5cycz"; depends=[dplyr magrittr readr stringr tibble]; }; + pgca = derive2 { name="pgca"; version="1.24.0"; sha256="1bk4h9vczj99wpw0gjwlyky8fp7i3qxcq59rz57fbgamiscx2prg"; depends=[]; }; + phantasus = derive2 { name="phantasus"; version="1.20.2"; sha256="1fbc7flz9lbhvms4il7mbivw8n92lmbw4ipds43cr72njmhzqg5s"; depends=[AnnotationDbi assertthat Biobase ccaPP curl data_table DESeq2 fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; + phemd = derive2 { name="phemd"; version="1.16.0"; sha256="1gdj0hnp61yd7djxvhafhgw6mlrzkfdxq0w4phq2kqkdmz3br072"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; }; + phenoTest = derive2 { name="phenoTest"; version="1.48.0"; sha256="0smkszpz13iqffghxfi49xy35b9bsjkavckhkgm7cv0pl05iibvg"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; + phenomis = derive2 { name="phenomis"; version="1.2.0"; sha256="08nhg8cafnxwarf21fra0sih3dbgca3db3dxgnxd0g69a11g91p4"; depends=[Biobase biodb biodbChebi data_table futile_logger ggplot2 ggrepel htmlwidgets igraph limma MultiAssayExperiment MultiDataSet plotly PMCMRplus ranger RColorBrewer ropls SummarizedExperiment tibble tidyr VennDiagram]; }; + phenopath = derive2 { name="phenopath"; version="1.24.0"; sha256="004abcdgrfki3xg07rnpzi9zf88hzpvb77k379crss24rjg1q09z"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; + philr = derive2 { name="philr"; version="1.26.0"; sha256="12sc8lmvyvr41w20igcxd4p7g1mpc5kxvqxhmdlv0qkrzkrysmb7"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; + phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.24.0"; sha256="15ias4dyriirc2zb0zyhiwgq7f4r9zvl609xjj8qv3zqr02lrr6r"; depends=[matrixStats plyr]; }; + phyloseq = derive2 { name="phyloseq"; version="1.44.0"; sha256="0rmv8f1m8ck97v991wdly3fma2rjczhi974lh7ikwx6rcx6fp9ah"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; + piano = derive2 { name="piano"; version="2.16.0"; sha256="0rm9afgq4n7yinmx09b0xd17wgzhbswm80vcjmmwxr6fv1741xfy"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; + pickgene = derive2 { name="pickgene"; version="1.72.0"; sha256="0yp83zmcbk1jlkcybcpgijgb49hdbxiygdd5yi0a5rv6mb8z0k83"; depends=[MASS]; }; + pipeComp = derive2 { name="pipeComp"; version="1.10.0"; sha256="0xqmlg7dzmdancw9rkfhlpgisdw5zk86qn9blx5c7zzbzp8p9qkb"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; }; + pipeFrame = derive2 { name="pipeFrame"; version="1.16.0"; sha256="0wm8irq03pgq34182a55m7rinrqa86qxvag42fb532hjqw5wx074"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr rmarkdown visNetwork]; }; + planet = derive2 { name="planet"; version="1.8.0"; sha256="1l5pxwnyz4mrvflllvba76rg2s7m1v3ywfdqxpzmxbyrf7djphlc"; depends=[dplyr magrittr tibble]; }; + planttfhunter = derive2 { name="planttfhunter"; version="1.0.0"; sha256="13gc2yial5h7f4370a6maw3nj0g47mdixdwiqjqxrzz97amj9bxb"; depends=[Biostrings SummarizedExperiment]; }; + plgem = derive2 { name="plgem"; version="1.72.0"; sha256="1kzrscaqsrsvdq2c9g93l7bjmv1s5p1l3cbrz6skkqls9h4gsw08"; depends=[Biobase MASS]; }; + plier = derive2 { name="plier"; version="1.70.0"; sha256="0hfg428pk5dwlyf9csvi138048hq7lv55ybwd9yri26s4anf7108"; depends=[affy Biobase]; }; + plotGrouper = derive2 { name="plotGrouper"; version="1.18.0"; sha256="1aiwl9pawf5xvv7951rd6g9ylqdgzv7s9rd0pam7v8yq1cx8z2q0"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; + plotgardener = derive2 { name="plotgardener"; version="1.6.0"; sha256="180sd7mc912c0zxwq2i3v48sr4rizflz3ksqabwydj2r66ac22ja"; depends=[curl data_table dplyr ggplotify IRanges plyranges purrr RColorBrewer Rcpp rlang strawr]; }; + plyranges = derive2 { name="plyranges"; version="1.20.0"; sha256="1qv8snpcxpg16v5ji7sq3bnmgrgghz9h4mh246mcnnxfhi44b6nv"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; + pmm = derive2 { name="pmm"; version="1.32.0"; sha256="1ps23z0n3bhcbbc2c5glni7x0d7fv6q3xmy97mcr2wb5ld78aqlq"; depends=[lme4]; }; + pmp = derive2 { name="pmp"; version="1.12.0"; sha256="0h9lav44rbisp5wybijng0jhca0hk2fhy65vy9yvw9hx0nk7vid9"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; + podkat = derive2 { name="podkat"; version="1.32.0"; sha256="1shxxk3bqc9vn6k1n3x02xna54zfq8ka4jqi9jvbqldm6kzc7fc9"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; + pogos = derive2 { name="pogos"; version="1.20.0"; sha256="0l3p484i32cdphm807zzgh8pdy4w2ld6qg8nfw5sc6ighym5qbbb"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; + polyester = derive2 { name="polyester"; version="1.36.0"; sha256="16afzb193dbn9ya0215jxfl0x8ks3qxd9mk575ck2avnggipjqqv"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; + powerTCR = derive2 { name="powerTCR"; version="1.20.0"; sha256="1x5k63x9q4fibsc3w7v9c2065af46f564fqdr9hpjrpr3nvc7gf6"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; }; + ppcseq = derive2 { name="ppcseq"; version="1.8.0"; sha256="1jz1wr4781bham3x835ccivknchv44gx0jjhvr0yqxkwxw8679h1"; depends=[benchmarkme BH dplyr edgeR foreach furrr future ggplot2 lifecycle magrittr purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; }; + pqsfinder = derive2 { name="pqsfinder"; version="2.16.0"; sha256="0mzh9h3p6q7718lxp9827l92phb4v9hj0sbw0fli2yagb7rq8bll"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; + pram = derive2 { name="pram"; version="1.16.0"; sha256="19g3xd5yncaws1x6j1lahd08j075zn9hhyqjlsfgwxi0d3a8mg8w"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + prebs = derive2 { name="prebs"; version="1.40.0"; sha256="0sc53wqwxiczc95hld4sbh3p0dd0di6648k34jibbhxcslr2vaji"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; + preciseTAD = derive2 { name="preciseTAD"; version="1.10.0"; sha256="14byrbkha56h8ds64sfiipc60qcmgy860snxzfqhpzqqh7li04i7"; depends=[caret cluster dbscan doSNOW e1071 foreach GenomicRanges gtools IRanges ModelMetrics pbapply pROC PRROC randomForest rCGH S4Vectors]; }; + preprocessCore = derive2 { name="preprocessCore"; version="1.62.1"; sha256="0z37ag22j1wh80vwq1kyr99rvadj9ppkddapfqyql3vj5x44cf4d"; depends=[]; }; + primirTSS = derive2 { name="primirTSS"; version="1.18.0"; sha256="1gi66d04yncgvk7mdliwy2riflf08yvhkg6i4p56z5cnq3g4fdac"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; + proActiv = derive2 { name="proActiv"; version="1.10.0"; sha256="1g1v01gx652ivi4h6fwlpdj5xig4z47fnc3dg6qy4cfryywh11sy"; depends=[AnnotationDbi BiocParallel data_table DESeq2 dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges rlang S4Vectors scales SummarizedExperiment tibble]; }; + proBAMr = derive2 { name="proBAMr"; version="1.34.0"; sha256="1x3fdr8m8cajp723piby2s3xakd5v7a4vqqdab6qhy1x5kmycwal"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; + proDA = derive2 { name="proDA"; version="1.14.0"; sha256="03q475s33ip05im7ib9a90n08dka52ff5c9s78g0sgkhq6hsff4x"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; }; + procoil = derive2 { name="procoil"; version="2.28.0"; sha256="0gqfdi2931fgd4wpbqik772s706k2rmcnsb1qhb3lxxdzmjhxxgv"; depends=[Biostrings kebabs S4Vectors]; }; + profileScoreDist = derive2 { name="profileScoreDist"; version="1.28.0"; sha256="1yx9csmyvqhni6id7yz6f45ancdrv02iikr3lv354kgi239ffcpz"; depends=[BiocGenerics Rcpp]; }; + profileplyr = derive2 { name="profileplyr"; version="1.16.0"; sha256="0xq5qwymsz2z5mq0f95d7jwdfa3idpbk22h6kqhcqlw7mch7xzwl"; depends=[BiocGenerics BiocParallel ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rlang Rsamtools rtracklayer S4Vectors soGGi SummarizedExperiment tidyr tiff TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + progeny = derive2 { name="progeny"; version="1.22.0"; sha256="047x6by3xa15gvi3kny5pkqxaq8d2kzcfi55ic5j7a351715l6l7"; depends=[Biobase decoupleR dplyr ggplot2 ggrepel gridExtra reshape2 tidyr]; }; + projectR = derive2 { name="projectR"; version="1.16.0"; sha256="1c6jafpmw310s6kdnfdagzs9ylxbisxrwlcrc796kyz9zswidsmj"; depends=[cluster CoGAPS dplyr ggalluvial ggplot2 limma NMF RColorBrewer reshape2 ROCR scales viridis]; }; + protGear = derive2 { name="protGear"; version="1.4.0"; sha256="18cxiyzqwkl7yjsx8cpcs3hkm67k6gq7hgy9mdl05pgmbzg9af9s"; depends=[Biobase data_table dplyr factoextra FactoMineR flexdashboard genefilter GGally ggplot2 ggpubr gtools htmltools Kendall knitr limma magrittr MASS pheatmap plotly plyr purrr readr remotes rlang rmarkdown shiny shinydashboard styler tibble tidyr vsn]; }; + proteasy = derive2 { name="proteasy"; version="1.2.0"; sha256="1mfk69k44krdj4wp6xpil391j9jrppyx1crvra525p8hahzc2d5m"; depends=[AnnotationFilter data_table EnsDb_Hsapiens_v86 EnsDb_Mmusculus_v79 EnsDb_Rnorvegicus_v79 ensembldb Rcpi stringr]; }; + proteinProfiles = derive2 { name="proteinProfiles"; version="1.40.0"; sha256="1m4qs5bgpb3v6syhxzm7nbxz9q4mlh5pm628yzqrhf5hyijx4hld"; depends=[]; }; + psichomics = derive2 { name="psichomics"; version="1.26.0"; sha256="1v0f2bs677vb2qrqnx1mcw4sfz2f7wcv77imyxza4xmxq7i48yp0"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; + psygenet2r = derive2 { name="psygenet2r"; version="1.31.0"; sha256="1xaxpqv8pzq5bdwq96zyz074iq4m81bl240ay2y8rglwlvp5iybv"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; + ptairMS = derive2 { name="ptairMS"; version="1.8.0"; sha256="1cjyhnx2qk1fxw4175c1nsnzgmgq1gqvn5f7gkzv4siznyyf28c5"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; }; + puma = derive2 { name="puma"; version="3.42.0"; sha256="0af5yq8g0cczal9gc7cxxcygwzlj84gnlabhg0inqpdanajk4ysv"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; + pvac = derive2 { name="pvac"; version="1.48.0"; sha256="1jhnlsk11cjv83fx4d3mj561rpcy8vsvsa3lypwl0fphh9hfrwq0"; depends=[affy Biobase]; }; + pvca = derive2 { name="pvca"; version="1.40.0"; sha256="0mgpnn5n20c8as7z06x2ssmxvl5rz5q40xf38ryxc0gh5ch1zra2"; depends=[Biobase lme4 Matrix vsn]; }; + pwOmics = derive2 { name="pwOmics"; version="1.32.0"; sha256="1ph2749pd5zgjbnraq7j9ixfqx9ivlzj9xw845z9m9xlq409gq06"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; + pwrEWAS = derive2 { name="pwrEWAS"; version="1.14.0"; sha256="1913h2syad9mfspxjvmrwm0mrcklbcl89lj04rn5x0xgfk8rk58a"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; }; + qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.18.0"; sha256="0v9yqkp3njmswf29y4d7zlnlpbnvhlnpbllh91z6gr0k8i3wfq9d"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; + qckitfastq = derive2 { name="qckitfastq"; version="1.16.0"; sha256="1ybkm3hps3rf35pm70vayxjw9pi6pr3z4clvy6v00xsg1svf1fdm"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; + qcmetrics = derive2 { name="qcmetrics"; version="1.38.0"; sha256="1641m5v4syan3mvmgciz190yj9z64wrijqaxpm1wjid2alk818wa"; depends=[Biobase knitr pander S4Vectors xtable]; }; + qmtools = derive2 { name="qmtools"; version="1.4.0"; sha256="1fcs5wnkkls69qgx7qqw6wdm1yfnm1p4j20n04d3brvjh45dcbk3"; depends=[ggplot2 heatmaply igraph limma MsCoreUtils patchwork rlang scales SummarizedExperiment VIM]; }; + qpcrNorm = derive2 { name="qpcrNorm"; version="1.58.0"; sha256="0zldz1cplrc82v922w4shankrsv57cq9bcsl6gnm9njx3gvc4h5m"; depends=[affy Biobase limma]; }; + qpgraph = derive2 { name="qpgraph"; version="2.34.2"; sha256="0h4xzyin9fsq3f2hw0a2igml2a0jq4h6gi6yi91ngi4fghb3vdn7"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; + qsea = derive2 { name="qsea"; version="1.26.0"; sha256="0v6kk5z1lcnrk5qgiraiz9md2m5s8jn5yn3wpavcrbsyz7lbls2n"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer S4Vectors zoo]; }; + qsmooth = derive2 { name="qsmooth"; version="1.16.0"; sha256="1krai8pb4xrmxvxa3s08i4z10gk90fnparfl5rqq2qrrzypclild"; depends=[Hmisc SummarizedExperiment sva]; }; + qsvaR = derive2 { name="qsvaR"; version="1.4.0"; sha256="0ppnkz75p3akj497ksv0xyjbsz8nac3cganhfh2yasiv1y2jb44c"; depends=[ggplot2 SummarizedExperiment sva]; }; + quantiseqr = derive2 { name="quantiseqr"; version="1.8.0"; sha256="1xifrpmfbdzp944h8n85r9dw3rp3dd90v4fc79919ncpj4229kal"; depends=[Biobase ggplot2 limSolve MASS preprocessCore rlang SummarizedExperiment tidyr]; }; + quantro = derive2 { name="quantro"; version="1.34.0"; sha256="08m94q65c11isbkx9xljm2bx2aq2rml1bqh5i1cg81xg2ilm9h6a"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; + quantsmooth = derive2 { name="quantsmooth"; version="1.66.0"; sha256="05lja0viz5jgc7g3b8qfhd1x596vczid0dz8278qpl4zwv9i17vx"; depends=[quantreg]; }; + qusage = derive2 { name="qusage"; version="2.34.0"; sha256="1m0bmyzygmq7hqc8iql8lqmpd21aqr6ilyiwv076jyfb3snvv1qi"; depends=[Biobase emmeans fftw limma nlme]; }; + qvalue = derive2 { name="qvalue"; version="2.32.0"; sha256="1552390pf3wrrir6c9xshgll69a33fhbdnh2cvpnznma1ag490ki"; depends=[ggplot2 reshape2]; }; + r3Cseq = derive2 { name="r3Cseq"; version="1.46.0"; sha256="1wpjsiy9qh45h3k5s79w4zhkma5h4gvyf2sa8l934mx0jl16k0q2"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; + rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.40.0"; sha256="19mhbsff9z0ii1y0x844l9y11hpnp4rir3xifj6qj3dzvbfmlsw4"; depends=[data_table XML]; }; + rCGH = derive2 { name="rCGH"; version="1.30.0"; sha256="18nwbxv0z8w0yxlwbwxpvh09hjzijrbxxlw1jic0sqwpf2p7rkvw"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + rDGIdb = derive2 { name="rDGIdb"; version="1.26.0"; sha256="1rjrk730riv3qc2g92s3lxzcwx9q9z5kfjsq3w50ng54f5nd7kka"; depends=[httr jsonlite]; }; + rGADEM = derive2 { name="rGADEM"; version="2.48.0"; sha256="08li2wql2zhg06z0rjws9qcnv3ishgnpc6k8xyjcf7yfyg7qpk1d"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; }; + rGREAT = derive2 { name="rGREAT"; version="2.2.0"; sha256="0qq3fqzd973jlf6ibfww5yicnyz2qvs2b2mn35p77k2mp4d7qp52"; depends=[AnnotationDbi circlize digest doParallel DT foreach GenomeInfoDb GenomicFeatures GenomicRanges GetoptLong GlobalOptions GO_db IRanges org_Hs_eg_db progress RColorBrewer Rcpp RCurl rjson S4Vectors shiny TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + rGenomeTracks = derive2 { name="rGenomeTracks"; version="1.6.0"; sha256="0i00a109gnsv3ac9lc2qj89ma94xrfpp6794v2i7r509vjna96n1"; depends=[imager reticulate rGenomeTracksData]; }; + rRDP = derive2 { name="rRDP"; version="1.34.0"; sha256="19nxnwysjwzpp16mwyf693qgla3473ppk4s0h1d1kcxf45g170af"; depends=[Biostrings]; }; + rSWeeP = derive2 { name="rSWeeP"; version="1.12.0"; sha256="0ph157ngm117sy0bfpmaq5h2wxqakpgymchvwznbgybjdcmz1awf"; depends=[pracma]; }; + rScudo = derive2 { name="rScudo"; version="1.16.0"; sha256="0wnlgvl3j1jn8yh1938f00c5zhlfpk8zrzvll15pakbqyvjpxjkr"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; }; + rTRM = derive2 { name="rTRM"; version="1.38.0"; sha256="1gw5fmcfp23gn9142336c4gqx9i717z17898627z52q0j175788r"; depends=[AnnotationDbi DBI igraph RSQLite]; }; + rTRMui = derive2 { name="rTRMui"; version="1.38.0"; sha256="1awwwj3n2chi85fg5xv7f7djsvacyvg37ggq0rc3rlbjzz0mlcxb"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; + rWikiPathways = derive2 { name="rWikiPathways"; version="1.20.0"; sha256="0p7q4kpw3ga1hdmbivcc8r5si3gjhicf628j7kyv3zf1f9ngda9f"; depends=[data_table httr RCurl rjson tidyr XML]; }; + rain = derive2 { name="rain"; version="1.34.0"; sha256="1ywx46yp81mam9g8fxqg74wm5pkslqi7asybxc3n19b3zsmkyvma"; depends=[gmp multtest]; }; + ramr = derive2 { name="ramr"; version="1.8.0"; sha256="1hbqfn4rbn382wcaar7yhik8bcxrn5jjssq1cj2w7sm4ilnd0abv"; depends=[BiocGenerics doParallel doRNG EnvStats ExtDist foreach GenomicRanges ggplot2 IRanges matrixStats reshape2 S4Vectors]; }; + ramwas = derive2 { name="ramwas"; version="1.24.0"; sha256="1ip4l9q9ihng73k372zp7wqraabpkl6h56a6lrpmb1qf0mgzpw5m"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; + randPack = derive2 { name="randPack"; version="1.46.0"; sha256="17mx9yml1izsjfwg5z720sc162cphzva9dxdzvvp1yb72x73q8x1"; depends=[Biobase]; }; + randRotation = derive2 { name="randRotation"; version="1.12.0"; sha256="0fdh6d5fa3xhd06d5idsqy5z377b962lmrk9qdyv2j2l2h1if2m4"; depends=[Rdpack]; }; + rawrr = derive2 { name="rawrr"; version="1.8.1"; sha256="1xqqyjd7f9m247shhzhw47ihwdbpvnrj9aknh23w5mhcnai4awyl"; depends=[]; }; + rbsurv = derive2 { name="rbsurv"; version="2.58.0"; sha256="0mpqhbqd4qr4kc9b11p104i1fjhcgskfwfphwdqyh10g0mh407sk"; depends=[Biobase survival]; }; + rcellminer = derive2 { name="rcellminer"; version="2.22.0"; sha256="028r51v4ycxv5rr9ln5q6si3jq5vviryq6i3cbwg3ma6dqzbvasd"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; }; + rebook = derive2 { name="rebook"; version="1.10.1"; sha256="0246cf3s7ijq588frdyyjxvgg5hnpnic2xl7gk7wksd30j9gzwls"; depends=[BiocStyle CodeDepends dir_expiry filelock knitr rmarkdown]; }; + receptLoss = derive2 { name="receptLoss"; version="1.12.0"; sha256="1ac0gkb05c576mphjccxk33swmqnizmwqywmzs6zrq146anl04m0"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; }; + reconsi = derive2 { name="reconsi"; version="1.12.0"; sha256="1955gccxry425d9d0fg41v5ravgqbd7f9jdydnzszfwz3glbr476"; depends=[ggplot2 ks Matrix matrixStats phyloseq reshape2]; }; + recount = derive2 { name="recount"; version="1.26.0"; sha256="0d50j6y0nnz1f4n01yk4p38nkbwjvkgrmdcmdqi109gbk0n6fn41"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; + recount3 = derive2 { name="recount3"; version="1.10.2"; sha256="0hiddnh3bz9r38av0h12na87nrx9zh5dk741r6dnb2l4hcwl4299"; depends=[BiocFileCache data_table GenomicRanges httr Matrix R_utils rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; + recountmethylation = derive2 { name="recountmethylation"; version="1.10.0"; sha256="0i9p0xdrmv4ingwkwkmw74f6gfqznx2vhcf8qqzykw1p0h7jiyiw"; depends=[basilisk BiocFileCache DelayedMatrixStats HDF5Array minfi R_utils RCurl reticulate rhdf5 S4Vectors]; }; + recoup = derive2 { name="recoup"; version="1.28.0"; sha256="1nns8wh9i6plag4pwxa8nm257islw694l89flhxyx30y8pfwl59r"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; + regionReport = derive2 { name="regionReport"; version="1.34.0"; sha256="1dpfmg8bnmm2wl1dgc9y9a8rmy8dvbcbv5877crgzhsmk25n03s6"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; + regioneR = derive2 { name="regioneR"; version="1.32.0"; sha256="0grlqga9d6mch9l487fdll65wi0m2kpq2097igfhx185i8jvwsz1"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; + regioneReloaded = derive2 { name="regioneReloaded"; version="1.2.0"; sha256="1wx198dc2ga7vpk8kca37v5d1b1ydz9l2z1xr029m8j6cxgzcx98"; depends=[cluster ggplot2 ggrepel RColorBrewer regioneR reshape2 Rtsne scales umap]; }; + regsplice = derive2 { name="regsplice"; version="1.26.0"; sha256="0yfdjrln2jhm84zd3qnk69gdbrm5p3l844f4lk9swmfgh8xq13sr"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; + regutools = derive2 { name="regutools"; version="1.12.0"; sha256="12ldh4gn0ni36mcykqg4wvsp7p3nnqgc2bddmc5bh1gamm5wlk9b"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; + restfulSE = derive2 { name="restfulSE"; version="1.22.0"; sha256="06029vslgw6sjg761x46ws2dwzrmbrwyf1v0brf7xasdjbaigpd7"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; + retrofit = derive2 { name="retrofit"; version="1.0.0"; sha256="0n9bi6gkssp13w8m4dwz9g4cpfvdjs4ydrm7p6b607pz94aggcyf"; depends=[Rcpp]; }; + rexposome = derive2 { name="rexposome"; version="1.22.0"; sha256="04zc3lyzvj3mq27w3zpk5sxk0agsbawgmalldmi51v3hcms286bv"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; + rfPred = derive2 { name="rfPred"; version="1.38.0"; sha256="0li13d7dlwi5j1zw4q31l14y61pmc9ki2nmb7hwrzfwbppi08n7x"; depends=[data_table GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + rfaRm = derive2 { name="rfaRm"; version="1.11.2"; sha256="0kn0ljazqwck405z87ljhvhg84dikmfdg7asnrjm3z27l2xjcxjz"; depends=[Biostrings data_table httr IRanges magick rsvg rvest S4Vectors stringi xml2]; }; + rgoslin = derive2 { name="rgoslin"; version="1.4.0"; sha256="1bbac7i1k79livslclc2zlrw2dcnscwknjmbn4w9748hv9i27y6q"; depends=[dplyr Rcpp]; }; + rgsepd = derive2 { name="rgsepd"; version="1.32.0"; sha256="0bk5l4fa4zmd69fasvwqy4z41y0q49ja95r5baa8w4261w4x5jkx"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots org_Hs_eg_db SummarizedExperiment]; }; + rhdf5 = derive2 { name="rhdf5"; version="2.44.0"; sha256="1akbr55lylwp20b2j351h1gcj1sc5y2j2pjjdpz43m6b7mji23a0"; depends=[rhdf5filters Rhdf5lib]; }; + rhdf5client = derive2 { name="rhdf5client"; version="1.22.0"; sha256="0h1f3c8jxswd4lk1aq91xavbsn8hg6ljzjw03kll1794r6j2jhj4"; depends=[data_table DelayedArray httr rjson]; }; + rhdf5filters = derive2 { name="rhdf5filters"; version="1.12.1"; sha256="1v9wxa5q0iwphrmkf9x70jpbq9r9rqz2hm94smqnnpfxszila49m"; depends=[Rhdf5lib]; }; + ribor = derive2 { name="ribor"; version="1.12.0"; sha256="0qf6yracvzc1sxa40l24y0wx14dj7rr1s60qxircx5zzq7c3xa5m"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; + ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.12.0"; sha256="0q1fl1w2ab7hmzgyp8d66nfr0fl7d32gvbh851sr6g2vx7rbnknn"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; + rifi = derive2 { name="rifi"; version="1.4.1"; sha256="0yprkxj5kkyy069pana3kjg4rixw58zw62qjcixc0y77sbny1h5r"; depends=[car cowplot doMC dplyr egg foreach ggplot2 nls2 nnet reshape2 rlang rtracklayer S4Vectors scales stringr SummarizedExperiment tibble]; }; + rifiComparative = derive2 { name="rifiComparative"; version="1.0.0"; sha256="0k6k939f9pnvc7ig5g20gdz5dg51qlvf2zasq8pymfdrfqirzmy8"; depends=[cowplot doMC dplyr DTA egg foreach ggplot2 ggrepel LSD nnet reshape2 rlang rtracklayer S4Vectors scales stringr SummarizedExperiment tibble writexl]; }; + rmelting = derive2 { name="rmelting"; version="1.16.0"; sha256="0gwbdm35k7izirg75h5frx837l456mjfk1p21srdiv2960anwmic"; depends=[Rdpack rJava]; }; + rmspc = derive2 { name="rmspc"; version="1.6.0"; sha256="0fp3rn8684ywwmqwxig6p7wd0rzhngs9v3a231yjd47sk5yjq03f"; depends=[BiocManager GenomicRanges processx rtracklayer stringr]; }; + rnaEditr = derive2 { name="rnaEditr"; version="1.10.0"; sha256="0xd4hr8bpc2frx0vvxx64mdcqgnc7cx8zbsddz9969klpy3cmcmq"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; + rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.30.0"; sha256="0y6fmg1msk30kry0y199bsz8mkzs7yzpfriq756lnjv5r73274z3"; depends=[RColorBrewer]; }; + roar = derive2 { name="roar"; version="1.36.0"; sha256="0p5q6nyp8d0gl95rd89xrs08gv87m1q6d0x4ws2b6sd4gc1nw2ny"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; + rols = derive2 { name="rols"; version="2.28.0"; sha256="0id962983i0r9chdlw469l8ghjsyiy9lk0j8dn697llz6rwsmbcd"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; + ropls = derive2 { name="ropls"; version="1.32.0"; sha256="1cq5ixaxag5r6nvl73c8bznxkdjhxw1r7qx90ml7qm4jr7wyi173"; depends=[Biobase ggplot2 MultiAssayExperiment MultiDataSet plotly SummarizedExperiment]; }; + rprimer = derive2 { name="rprimer"; version="1.4.0"; sha256="0a023rl3wq3dbgvgxrmycbs1ryspwxmgd77rq5fkg1mbk0pnd0gc"; depends=[Biostrings bslib DT ggplot2 IRanges mathjaxr patchwork reshape2 S4Vectors shiny shinycssloaders shinyFeedback]; }; + rpx = derive2 { name="rpx"; version="2.8.0"; sha256="1ay127hn7hq3dhs2sb1ah8d1xvzldnmam8yxbwwhsymxfkhidy9h"; depends=[BiocFileCache curl jsonlite RCurl xml2]; }; + rqt = derive2 { name="rqt"; version="1.26.0"; sha256="0by212x06h2k6mcwzam78n4w7f9akl7qbnpdkyiy2dd6jiq89bdv"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; + rqubic = derive2 { name="rqubic"; version="1.46.0"; sha256="0hshaxa19nk43x4nscsbzd8f0pa8138yaxz0lwfywrs2mya5y7jg"; depends=[biclust Biobase BiocGenerics]; }; + rrvgo = derive2 { name="rrvgo"; version="1.12.0"; sha256="0h6w1dncbazda98jam69znn009mv7z660rllvffwg32133rcckcf"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap umap wordcloud]; }; + rsbml = derive2 { name="rsbml"; version="2.58.0"; sha256="0mgg1qfvxgyjk6fw4x0cv486vrsgf1kbqr6nqhgxj6lk8w6909fm"; depends=[BiocGenerics graph]; }; + rsemmed = derive2 { name="rsemmed"; version="1.10.0"; sha256="06nbbymllyd7aa203mrip10q24xj249xhzhl3h9r8pdb7c4xh1f5"; depends=[dplyr igraph magrittr stringr]; }; + rtracklayer = derive2 { name="rtracklayer"; version="1.60.0"; sha256="0gy8df0ndq6nyly4b5h3kby8k77rc4j9n7zhnliryvirpr6alm9m"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl restfulr Rsamtools S4Vectors XML XVector zlibbioc]; }; + runibic = derive2 { name="runibic"; version="1.22.0"; sha256="0q67vyny6qsh6slcjpmvmd3i9qh71qf37nx1isb3dc06680708a1"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; + sRACIPE = derive2 { name="sRACIPE"; version="1.16.0"; sha256="1318nrm65c5n2n4822nph7l83klrp1iik8jprr7j9qgbbzdlwwjh"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; }; + sSNAPPY = derive2 { name="sSNAPPY"; version="1.4.1"; sha256="1cpgzkgjjna0r4a3qw2g94gwrxkm7d327cyvjhilxysi3jcnx0f3"; depends=[BiocParallel dplyr edgeR ggforce ggplot2 ggraph graphite igraph magrittr org_Hs_eg_db pheatmap Rcpp RcppArmadillo reshape2 rlang stringr SummarizedExperiment tibble]; }; + sSeq = derive2 { name="sSeq"; version="1.38.0"; sha256="05c0pxw38bgijd39i92jxm3kwm0dihdff83cdh48saj240ynf7sp"; depends=[caTools RColorBrewer]; }; + safe = derive2 { name="safe"; version="3.40.0"; sha256="0hg2pnwyg6xicqr9q7z5wmy32fcicid2agaf761xgq4qm0y302h7"; depends=[AnnotationDbi Biobase SparseM]; }; + sagenhaft = derive2 { name="sagenhaft"; version="1.70.0"; sha256="02q0y9r098rimqxm6hzbpkdsij0smg55amxy6pyahjh6yn5jcp91"; depends=[SparseM]; }; + sampleClassifier = derive2 { name="sampleClassifier"; version="1.24.0"; sha256="1ampbprwhzkfg2m1wil2vp5bskqbpql0b1gybz0hbq0f1m1dgcdw"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; + sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.10.0"; sha256="1a2x9csp7q2z3hfzmnf145mxdl3lqwkccnwffpp16rhp358ld2m0"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra knitr logger openxlsx phangorn plotly reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; }; + sangerseqR = derive2 { name="sangerseqR"; version="1.36.0"; sha256="0hhq5zsx4srd9ndr370m44f80qdlrqafjv1838wf65gzijffhfqb"; depends=[Biostrings shiny stringr]; }; + sarks = derive2 { name="sarks"; version="1.12.0"; sha256="1sa58j2zy1cakv5h0syv3v3zk13kyxb0wr2sa11q3s1znlip8a20"; depends=[binom Biostrings cluster IRanges rJava]; }; + satuRn = derive2 { name="satuRn"; version="1.8.0"; sha256="0frm7iblxkc8ajcdqrfgsvf4krn6x8cr3mx7fnzq06xij0mqm3sj"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; }; + savR = derive2 { name="savR"; version="1.37.0"; sha256="13wiw7isdmpwhynxjrhimy9yglcz1108k7nwa98vq9czq49zpada"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; + scAnnotatR = derive2 { name="scAnnotatR"; version="1.6.0"; sha256="0mxq2dknrhgj1487kfshkayx963c7qdgxwmlh9fbfr0lwc7gljfn"; depends=[AnnotationHub ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; + scBFA = derive2 { name="scBFA"; version="1.14.0"; sha256="0wp9qrra0y5qf2ip0snfcy5wx1b89dxc0y6vsrggl4n4v2dd43l9"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; }; + scBubbletree = derive2 { name="scBubbletree"; version="1.2.0"; sha256="0d6xrzyslpxjxmfqd9bjwvdxa17slgp8gsyz9s7m8ccpaqrd2xwk"; depends=[ape future future_apply ggplot2 ggtree patchwork proxy reshape2 scales Seurat]; }; + scCB2 = derive2 { name="scCB2"; version="1.10.0"; sha256="1mmabi88zz373lclaabdnp8p2wyq5kk41np6i7zysqpkp1xfc7k0"; depends=[doParallel DropletUtils edgeR foreach iterators Matrix rhdf5 Seurat SingleCellExperiment SummarizedExperiment]; }; + scClassify = derive2 { name="scClassify"; version="1.12.0"; sha256="15zv01x6s50vwp8hwdy7b1rgmphvvx9wbkpp1p1n2wwv2py4msmw"; depends=[BiocParallel Cepo cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; }; + scDD = derive2 { name="scDD"; version="1.24.0"; sha256="1ndb1zcbdy00xkfx18slrm5bnld9ci5scysc37clhsq2lq5xb25z"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; + scDDboost = derive2 { name="scDDboost"; version="1.2.0"; sha256="1h10hi3czmzqxlbdi67b8ni3p9za7f2lfsw8z5dn2lxw1nn42c8q"; depends=[BH BiocParallel cluster EBSeq ggplot2 mclust Oscope Rcpp RcppEigen SingleCellExperiment SummarizedExperiment]; }; + scDataviz = derive2 { name="scDataviz"; version="1.10.0"; sha256="0sv92nzn8wwl9lxyl6rcdsid78i18hrda8smzhyfyd0yryl77x57"; depends=[corrplot flowCore ggplot2 ggrepel MASS matrixStats RColorBrewer reshape2 S4Vectors scales Seurat SingleCellExperiment umap]; }; + scDblFinder = derive2 { name="scDblFinder"; version="1.14.0"; sha256="0lvacrgfj9i8mwlcv5ykxs69hd3bm6bvr6fsddxffsr7cckpn31w"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular bluster DelayedArray GenomeInfoDb GenomicRanges igraph IRanges MASS Matrix Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment SummarizedExperiment xgboost]; }; + scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.20.0"; sha256="0m1c5zsyfc25pdg2204i0bgl1lsbn23xcrgrsncbkgjbfg6klygq"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; + scFeatures = derive2 { name="scFeatures"; version="1.0.0"; sha256="0lxfa89a4jscs6grwr75kgvmdng1ayplpfg1yq01fd7d1xn29vk2"; depends=[ape AUCell BiocParallel cli DelayedArray DelayedMatrixStats dplyr DT EnsDb_Hsapiens_v79 EnsDb_Mmusculus_v79 ensembldb glue GSVA gtools MatrixGenerics msigdbr proxyC reshape2 rmarkdown Seurat SingleCellSignalR SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tidyr]; }; + scGPS = derive2 { name="scGPS"; version="1.14.1"; sha256="091abnxp5vax0ms4j806kqhwjrnariwcgnbg6h4lgq95aqmr71pm"; depends=[caret DESeq2 dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; }; + scHOT = derive2 { name="scHOT"; version="1.12.0"; sha256="0l31lrxxq45fxbdif2lwq34v4la4lsk8y1aws5nlynsmp1mpxzmy"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scMET = derive2 { name="scMET"; version="1.2.0"; sha256="1qb0i095pbw1yvn9sy61xl52r8hw2gyal93nq7fvws6h5gz6jrxw"; depends=[assertthat BH BiocStyle coda cowplot data_table dplyr ggplot2 logitnorm MASS Matrix matrixStats Rcpp RcppEigen RcppParallel rstan rstantools S4Vectors SingleCellExperiment StanHeaders SummarizedExperiment VGAM viridis]; }; + scMerge = derive2 { name="scMerge"; version="1.16.0"; sha256="0f6sm6gqzz7sfwlfzccg8ksv75zbk1pzy54wv7skvqxzfqpdv6dx"; depends=[batchelor BiocNeighbors BiocParallel BiocSingular cluster cvTools DelayedArray DelayedMatrixStats distr igraph M3Drop proxyC ruv S4Vectors scater scran SingleCellExperiment SummarizedExperiment]; }; + scPCA = derive2 { name="scPCA"; version="1.14.0"; sha256="0s1yxnzb2qvhiiss5g5v248xshp8faq3s996jg4znliyl0v3dc50"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; }; + scPipe = derive2 { name="scPipe"; version="2.0.0"; sha256="12kh6l9wndxxvya94a3d6y1ss0vz7waa3hf3ih3xaash0wfqmp6s"; depends=[AnnotationDbi basilisk BiocGenerics biomaRt Biostrings data_table dplyr DropletUtils flexmix GenomicAlignments GenomicRanges GGally ggplot2 glue hash IRanges magrittr MASS Matrix mclust MultiAssayExperiment org_Hs_eg_db org_Mm_eg_db purrr Rcpp reshape reticulate Rhtslib rlang robustbase Rsamtools Rsubread rtracklayer S4Vectors scales SingleCellExperiment stringr SummarizedExperiment testthat tibble tidyr zlibbioc]; }; + scRNAseqApp = derive2 { name="scRNAseqApp"; version="1.0.1"; sha256="07947931pa1f1nn5wkl7ia6m33w4hljggpr72b2klh0pi3qbkbx7"; depends=[bibtex bslib circlize ComplexHeatmap data_table DT GenomeInfoDb GenomicRanges ggdendro ggforce ggplot2 ggrepel ggridges gridExtra hdf5r htmltools IRanges jsonlite magrittr patchwork plotly RColorBrewer RefManageR Rsamtools rtracklayer S4Vectors scales scrypt Seurat SeuratObject shiny shinyhelper shinymanager SingleCellExperiment slingshot xfun xml2]; }; + scReClassify = derive2 { name="scReClassify"; version="1.6.0"; sha256="0f7jrl2kfp1rg70y2z2lbidxqy9bx5kgmn56ycp0mwi1q8fzm6ji"; depends=[e1071 randomForest SingleCellExperiment SummarizedExperiment]; }; + scRecover = derive2 { name="scRecover"; version="1.16.0"; sha256="0klxs99f59icrwsxz8v9pkmfljzzqrc49c7xzvk512fxz5cbcvwg"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl rsvd SAVER]; }; + scRepertoire = derive2 { name="scRepertoire"; version="1.10.0"; sha256="1kra7j7bmyabnc6wldrcbz98a58n4a1dygq0i7940ya1qrj10w0m"; depends=[doParallel dplyr ggalluvial ggplot2 ggraph igraph plyr powerTCR reshape2 rlang SeuratObject SingleCellExperiment stringdist stringr SummarizedExperiment tidygraph vegan]; }; + scShapes = derive2 { name="scShapes"; version="1.6.0"; sha256="0zzhyc64dwpl9bnr6myqqzvwynb3mz1xy9rjma956cqmbrxf82bx"; depends=[BiocParallel dgof emdbook magrittr MASS Matrix pscl VGAM]; }; + scTGIF = derive2 { name="scTGIF"; version="1.14.0"; sha256="1vqm7hc3myf8s6l7jl32hq8n1m98hhcbsqy37ghlwbds0i5gxvqk"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; }; + scTHI = derive2 { name="scTHI"; version="1.12.0"; sha256="07hlk5sgvw3sqflpw0yxp57sby4nk5grbjxwsn62j3k3fk9y67am"; depends=[BiocParallel Rtsne]; }; + scTensor = derive2 { name="scTensor"; version="2.10.0"; sha256="1a3phvbsbl12g6yvw8zg0vakb4pgnamacxkhkxdm8rhlqlsbh8pb"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category ccTensor checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; }; + scTreeViz = derive2 { name="scTreeViz"; version="1.6.0"; sha256="18jj4dywwi0l1d3djhlsqqz91hyldpaa8khb49h4q6jy4lb3khaq"; depends=[clustree data_table digest epivizr epivizrData epivizrServer ggplot2 ggraph httr igraph Matrix Rtsne S4Vectors scater scran Seurat SingleCellExperiment SummarizedExperiment sys]; }; + scanMiR = derive2 { name="scanMiR"; version="1.6.0"; sha256="11sx73bdq7yw0h1lxfky09dm7qhyl8aba1hdv6v9zc10x7q5zbsn"; depends=[BiocParallel Biostrings cowplot data_table GenomeInfoDb GenomicRanges ggplot2 ggseqlogo IRanges S4Vectors stringi]; }; + scanMiRApp = derive2 { name="scanMiRApp"; version="1.6.0"; sha256="16lvd1a2s7y7bh94c80i4rbjz1wgq36lr0z2mwq0nmyfccdw28xi"; depends=[AnnotationDbi AnnotationFilter AnnotationHub BiocParallel Biostrings data_table digest DT ensembldb fst GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets IRanges Matrix plotly rintrojs rtracklayer S4Vectors scanMiR scanMiRData shiny shinycssloaders shinydashboard shinyjqui waiter]; }; + scater = derive2 { name="scater"; version="1.28.0"; sha256="0v6qaflv7b504yxxv6bmnlikg36bhfahgqxigpq6qcfrhqapmqck"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats densvis ggbeeswarm ggplot2 ggrastr ggrepel Matrix pheatmap RColorBrewer RcppML rlang Rtsne S4Vectors scuttle SingleCellExperiment SummarizedExperiment uwot viridis]; }; + scatterHatch = derive2 { name="scatterHatch"; version="1.6.0"; sha256="1pqnwddya89af9zglbh7mf5wys8lbkg64b48jgxgp7s672zskh4r"; depends=[ggplot2 plyr spatstat_geom]; }; + sccomp = derive2 { name="sccomp"; version="1.4.0"; sha256="1hb686ix9wa75qmw14r74b377wp7nclqnpj0vaza7cj5dk7sqlmg"; depends=[BH boot dplyr forcats ggplot2 ggrepel glue lifecycle magrittr patchwork purrr Rcpp RcppEigen RcppParallel readr rlang rstan rstantools scales SeuratObject SingleCellExperiment StanHeaders stringr tibble tidyr tidyselect]; }; + scde = derive2 { name="scde"; version="2.28.2"; sha256="1sfm82cppcrb3nsnw5p6l659yp432zi4i12g1gfn9c9k46pzwi7d"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; + scds = derive2 { name="scds"; version="1.16.0"; sha256="059gahl679if8xsfgpxmi3h9fiagb6v08rd6rs7yv96s3pb8qywn"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; }; + schex = derive2 { name="schex"; version="1.14.0"; sha256="06vzxg1yc2bj1bk5w7b74gx7a3c122kynv4v76m1cl8a5pwqpf5a"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin scales Seurat shiny SingleCellExperiment]; }; + scifer = derive2 { name="scifer"; version="1.2.0"; sha256="0ib83zvigjwvvi5ydbizwilb36f7krgq5843jy4rwiaxnn4hsnfm"; depends=[Biostrings data_table DECIPHER dplyr flowCore ggplot2 gridExtra kableExtra knitr plyr rlang rmarkdown sangerseqR scales stringr tibble]; }; + scmap = derive2 { name="scmap"; version="1.22.3"; sha256="06i3r7zybwcgnak9ml2jaz7fy70zjqdh28v03ckaqhvck49kdqdm"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scmeth = derive2 { name="scmeth"; version="1.20.0"; sha256="15lnfibzqybqzjkv8c596rbm7smyfdifc7dhx6d4kqi1yacl9r0b"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; + scone = derive2 { name="scone"; version="1.24.0"; sha256="0v3rd2h0n52qz9kqxa3l49rjfssfk252dy7j2nvi34y85win2p1w"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; }; + scoreInvHap = derive2 { name="scoreInvHap"; version="1.22.0"; sha256="08wh1c9rvmyp45jaaa0zzb3p82qi8qnqn8dqxn8rg0cjv945dk8g"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; + scp = derive2 { name="scp"; version="1.10.0"; sha256="0crargdazkhfp3ijpq3mch6ag7y4ksd61v5cf7jbhgn925xrwfwl"; depends=[dplyr magrittr matrixStats MsCoreUtils MultiAssayExperiment QFeatures S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scran = derive2 { name="scran"; version="1.28.1"; sha256="1qfmxarw5x17ag66r9i51vxm5h8fxm4rdicv6s8q5pnaf188hdcp"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; + screenCounter = derive2 { name="screenCounter"; version="1.0.0"; sha256="1ffik0rhayl6pl2i84kvlbhawx3jj5dzwcyhbqdj8g8if5p53443"; depends=[BiocParallel Rcpp S4Vectors SummarizedExperiment]; }; + scruff = derive2 { name="scruff"; version="1.18.0"; sha256="07mjd3y4kyd8536j9q8m3vxpfb2a92s0hb6wsgcpb2c45fxayg3c"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; + scry = derive2 { name="scry"; version="1.12.0"; sha256="0406slld468m9lxswv1akcdmap6izvzz6zljyrs5av546nfxpmrz"; depends=[BiocSingular DelayedArray glmpca Matrix SingleCellExperiment SummarizedExperiment]; }; + scuttle = derive2 { name="scuttle"; version="1.10.1"; sha256="13207k7b9qrpcngk4vd3jhc3zz815anwci1dqgadjyn4c8ragmnj"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scviR = derive2 { name="scviR"; version="1.0.0"; sha256="04yz41qzgy87frxnykvnsyf1kjaw629fr5hrjv9m4k5jdmqrc0bl"; depends=[basilisk BiocFileCache limma pheatmap reticulate S4Vectors scater shiny SingleCellExperiment SummarizedExperiment]; }; + sechm = derive2 { name="sechm"; version="1.8.0"; sha256="1wsf3bhxm48wvyl9g6hhcb1mgy6hds27w6yibyjs695gf4ni5p7p"; depends=[circlize ComplexHeatmap matrixStats randomcoloR S4Vectors seriation SummarizedExperiment]; }; + segmenter = derive2 { name="segmenter"; version="1.6.0"; sha256="04sfk7r3qg0jx1aqh7vhnmq5zy0ilg96zbzaqvjfg70bir5v6scd"; depends=[bamsignals ChIPseeker chromhmmData ComplexHeatmap GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + selectKSigs = derive2 { name="selectKSigs"; version="1.12.0"; sha256="0l4f4yz9qj5lqay5z211jf6qp8frbdp4ra443rlcp2fpgnxhiw16"; depends=[gtools HiLDA magrittr Rcpp]; }; + semisup = derive2 { name="semisup"; version="1.24.0"; sha256="0q3b7yhi472k5dk5r3222mpnr5isqqkrakd2g9s3q8hvl3m4h38b"; depends=[VGAM]; }; + seq_hotSPOT = derive2 { name="seq.hotSPOT"; version="1.0.0"; sha256="1qb7rlfc9v7bqmh3dkj521gy9h41s3xrzyfp048gj3sjs78k5477"; depends=[hash R_utils]; }; + seq2pathway = derive2 { name="seq2pathway"; version="1.32.0"; sha256="1f3cxlqa8n79zldcjygz9sf4r3l8p4w2jm4v7898wayz13wvdm6w"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; + seqArchR = derive2 { name="seqArchR"; version="1.4.0"; sha256="1jd1bxk3hswcnbc1qn0j2sgrwrdfwnmbbypina6yyfizf4i7si8v"; depends=[BiocParallel Biostrings cli cluster cvTools fpc ggplot2 ggseqlogo MASS Matrix matrixStats prettyunits reshape2 reticulate]; }; + seqArchRplus = derive2 { name="seqArchRplus"; version="1.0.0"; sha256="0rr2fm0ygf65fmzwmi12ffdi3r7sbg8fb7snzx8nn1v36azaxriy"; depends=[BiocParallel Biostrings BSgenome ChIPseeker cli clusterProfiler cowplot factoextra forcats GenomeInfoDb GenomicRanges ggplot2 gridExtra heatmaps IRanges RColorBrewer S4Vectors scales seqArchR seqPattern]; }; + seqCAT = derive2 { name="seqCAT"; version="1.22.0"; sha256="0zy91ha910hkwfyb2yv5sr6s2vf46j09hchibs31i0apsaj8082d"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; + seqCNA = derive2 { name="seqCNA"; version="1.46.0"; sha256="0ycmb2fzhhlwpldgnjb52sgs3kavfc61ny2gb3w3093f5ng5hri8"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; + seqLogo = derive2 { name="seqLogo"; version="1.66.0"; sha256="0727yrmm194gskrcpmq4fh0qmi6dnp70gx627psrpvzlk6vlcl8k"; depends=[]; }; + seqPattern = derive2 { name="seqPattern"; version="1.32.0"; sha256="033hss67dxi6fbvn6ya7vc61f60m20hwms9kmdia0icyp8nv2yil"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; + seqTools = derive2 { name="seqTools"; version="1.34.0"; sha256="0sv8rxx8ialgh1v50ywh75ri7wzs6r6xi7c7xy4c6y2a897gv89s"; depends=[zlibbioc]; }; + seqbias = derive2 { name="seqbias"; version="1.48.0"; sha256="1sspl03m2hf6s5rw6nfqrycb236nvcgygql6apdlg3cjnikf090j"; depends=[Biostrings GenomicRanges Rhtslib zlibbioc]; }; + seqcombo = derive2 { name="seqcombo"; version="1.22.0"; sha256="1r3gmlh2c087dgffkxs6y05pmv87c8psmk13v8bjryc6z2xa3g3y"; depends=[ggplot2 igraph yulab_utils]; }; + seqsetvis = derive2 { name="seqsetvis"; version="1.20.0"; sha256="14j72hsghq7r3sp3y3spky8x618c6s2j25sqqk0kcxcmzc5gmzvn"; depends=[cowplot data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; + sesame = derive2 { name="sesame"; version="1.18.4"; sha256="1il33ygys6y72l8p3fhx301q16w9kylfy6w92b64n8gqkn6dmsmn"; depends=[BiocFileCache BiocParallel dplyr GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore readr reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; + sevenC = derive2 { name="sevenC"; version="1.20.0"; sha256="0mgngw3cvqm25jjsymxwfhykc7riip28c5bvkfkb6xcbakp6bqj6"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; + sevenbridges = derive2 { name="sevenbridges"; version="1.30.0"; sha256="1sym0sjyn4ppsixmwxg84g669xf7jahmx76xl7qfk0m2zz9r0100"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; + shinyMethyl = derive2 { name="shinyMethyl"; version="1.36.0"; sha256="1rqwwglj0475gr14bxazfmcvsy7rq6nlw2zcswa684751wy15w0r"; depends=[Biobase BiocGenerics htmltools MatrixGenerics minfi RColorBrewer shiny]; }; + shinyepico = derive2 { name="shinyepico"; version="1.8.0"; sha256="0f9zv3ds9l0bisp8lif0g664i0y59ygrlazhbdxkd7v9ypg22qz1"; depends=[data_table doParallel dplyr DT foreach GenomicRanges ggplot2 gplots heatmaply limma minfi plotly reshape2 rlang rmarkdown rtracklayer shiny shinycssloaders shinyjs shinythemes shinyWidgets statmod tidyr zip]; }; + sigFeature = derive2 { name="sigFeature"; version="1.18.0"; sha256="00gqfzbymmma6j0a9j6jf2pv4gahjh70a6pyp6kjnzs5zdmsh7z1"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; + siggenes = derive2 { name="siggenes"; version="1.74.0"; sha256="0h5asj2w4xgfj9xapjawmxldnhq789py39drlr8illyhcczkzkbz"; depends=[Biobase multtest scrime]; }; + sights = derive2 { name="sights"; version="1.26.0"; sha256="1q13lx4afw9mryjwhbnrn6izvg70a75sdqsmg2p4ymv7ipdk4gba"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; + signatureSearch = derive2 { name="signatureSearch"; version="1.14.0"; sha256="0v7af0qg6kfbpz789sgd8v14ddnd0mkz1cmihik79r49xd99q4hk"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix org_Hs_eg_db qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment tibble visNetwork]; }; + signeR = derive2 { name="signeR"; version="2.2.1"; sha256="09jpiq5sgcvrd5byqqx25hq2gzy01sqfgy90h2lq3bxzhzg8wbad"; depends=[ada BiocFileCache BiocGenerics Biostrings BSgenome bsplus class clue cowplot dplyr DT e1071 future future_apply GenomeInfoDb GenomicRanges ggplot2 ggpubr glmnet IRanges kknn listenv magrittr MASS maxstat nloptr NMF pheatmap PMCMRplus ppclust pROC proxy pvclust randomForest RColorBrewer Rcpp RcppArmadillo readr reshape2 rtracklayer scales shiny shinycssloaders shinydashboard shinyWidgets survival survivalAnalysis survminer tibble tidyr VariantAnnotation VGAM]; }; + signifinder = derive2 { name="signifinder"; version="1.2.1"; sha256="1xsbnk7igq5avg4lh63iwaqrp36cnqxdqmqqz13z7ls3nlgryq7q"; depends=[AnnotationDbi BiocGenerics ComplexHeatmap consensusOV cowplot DGEobj_utils dplyr ensembldb ggplot2 ggridges GSVA IRanges magrittr matrixStats maxstat openair org_Hs_eg_db patchwork RColorBrewer SummarizedExperiment survival survminer TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene viridis]; }; + sigsquared = derive2 { name="sigsquared"; version="1.32.0"; sha256="1xbza4mccyyby4wlv2fdi5afcqf3g069p83czprlvmfz2rym9vil"; depends=[Biobase survival]; }; + similaRpeak = derive2 { name="similaRpeak"; version="1.32.0"; sha256="0sjkzal9wixd421znrlgy6rbczkrqrdykcidm5jn1w48197aczh9"; depends=[R6]; }; + simpleSeg = derive2 { name="simpleSeg"; version="1.2.0"; sha256="1fsp5z46y9br0z0pb7ygn1lns3rk0lml45msq2g1r0rq5vhwm5hw"; depends=[BiocParallel cytomapper EBImage S4Vectors spatstat_geom SummarizedExperiment terra]; }; + simplifyEnrichment = derive2 { name="simplifyEnrichment"; version="1.10.0"; sha256="1vs57j361fbwv7vaybs71vc208qn76djmbmakhwwcvxwrx77jp5f"; depends=[AnnotationDbi BiocGenerics circlize clue cluster colorspace ComplexHeatmap digest GetoptLong GlobalOptions GO_db GOSemSim Matrix org_Hs_eg_db proxyC slam tm]; }; + sincell = derive2 { name="sincell"; version="1.32.0"; sha256="09h47w87459k4vhmcjfi1vf47sh1q5qrbrasdg9jsg3cykwhj6vj"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; + single = derive2 { name="single"; version="1.4.0"; sha256="1khfbcyn0jwl5gcsmxzzzgqvd5hp73qmn8hpjs4rb54grv73jqwy"; depends=[BiocGenerics Biostrings dplyr GenomicAlignments IRanges reshape2 rlang Rsamtools stringr tidyr]; }; + singleCellTK = derive2 { name="singleCellTK"; version="2.10.0"; sha256="1dy5hikav4d9i5nl8cgrn0ykvn7027743lhwi5h6xphq7cl30pmv"; depends=[AnnotationHub ape batchelor Biobase BiocParallel celda celldex circlize cluster colorspace colourpicker ComplexHeatmap cowplot data_table DelayedArray DelayedMatrixStats DESeq2 dplyr DropletUtils DT eds enrichR ensembldb ExperimentHub fields ggplot2 ggplotify ggrepel ggtree gridExtra GSEABase GSVA GSVAdata igraph KernSmooth limma magrittr MAST Matrix matrixStats metap msigdbr multtest plotly plyr R_utils reshape2 reticulate rlang rmarkdown ROCR Rtsne S4Vectors scater scDblFinder scds scMerge scran scRNAseq scuttle Seurat shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SingleR SoupX SummarizedExperiment sva TENxPBMCData tibble TrajectoryUtils TSCAN tximport VAM withr yaml zellkonverter zinbwave]; }; + singscore = derive2 { name="singscore"; version="1.20.0"; sha256="1s1kyvkbfgwskf0hi4b44c2yx256rjp1yk9ijpld9qlm7z7pi67q"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; }; + sitadela = derive2 { name="sitadela"; version="1.8.0"; sha256="06yn6hp3c099qnnzvl09lbjpn2v0vardkcqrbryjpl2044i6wxvg"; depends=[Biobase BiocGenerics biomaRt Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; + sitePath = derive2 { name="sitePath"; version="1.16.0"; sha256="0fqby5jh3j5pgdmnq5mr767r6cp2r40q9xf5y9qj2svkqlkwkgqw"; depends=[ape aplot ggplot2 ggrepel ggtree gridExtra RColorBrewer Rcpp seqinr tidytree]; }; + sizepower = derive2 { name="sizepower"; version="1.70.0"; sha256="0vb1s0vg7mspd3mp5jzzy9fzpiqc104xkdhmvry8rcmai5x138lg"; depends=[]; }; + skewr = derive2 { name="skewr"; version="1.32.0"; sha256="0dzqy02vhqqyhi34dbjy30yqjazd19wnb0q2829gwpxfqq286q0v"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; + slalom = derive2 { name="slalom"; version="1.22.0"; sha256="1bwrcqd2d7x4sgx22yb1al2lwz9wjrhzqrwk6m2025s8sl0ha24j"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; + slingshot = derive2 { name="slingshot"; version="2.8.0"; sha256="1xr17rg8nfpcvdwa19qrcaqffkz048l5lkqlm6gw0abm8bg2k8x7"; depends=[igraph matrixStats princurve S4Vectors SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; + snapCGH = derive2 { name="snapCGH"; version="1.70.0"; sha256="0yz5q7w3lqv8ac6a764xlbm4hq3ncnngqng879qbpmzhgb4r155g"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; + snapcount = derive2 { name="snapcount"; version="1.12.0"; sha256="026f5vsh5hqjf8lqwfvx6qnif1f915ivvr4imjdmqqnk74q2skk8"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; }; + snifter = derive2 { name="snifter"; version="1.10.0"; sha256="1j4wd8x3hbfn0jklhwm13d07g3al3madxhrapzikiph7kcjlr5g6"; depends=[assertthat basilisk irlba reticulate]; }; + snm = derive2 { name="snm"; version="1.48.0"; sha256="1phbkikl961kag0if39h9rrqnxn3dj3x3f4wcvig5b0k939kf5pc"; depends=[corpcor lme4]; }; + snpStats = derive2 { name="snpStats"; version="1.50.0"; sha256="1v2j2943apphs8i68ap9c8sxd4j5a04qda5scq4dqqkzqd0c5b6i"; depends=[BiocGenerics Matrix survival zlibbioc]; }; + soGGi = derive2 { name="soGGi"; version="1.32.0"; sha256="1q84di6ddv1yyrhmjgjngn01vp7rgx3n6d6s8y9yglg9wi8133id"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + spaSim = derive2 { name="spaSim"; version="1.2.1"; sha256="1kf37ni2i2paa5gml0nq9n7hj8mvc1rbr3gma4ymixlr7k2cvs89"; depends=[dplyr ggplot2 RANN SpatialExperiment spatstat_geom spatstat_random SummarizedExperiment]; }; + sparrow = derive2 { name="sparrow"; version="1.6.0"; sha256="1sd8qsx30wj7yafr1n6q46vncf8q0x0lf90p0vmhhx092dlanmnd"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; + sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.24.0"; sha256="1xy9kd5a9vilwkgr4xw6lcdwgwykg7q7kildpfw4gqymd1frnjp6"; depends=[MASS MCMCpack optparse tmvtnorm]; }; + sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.12.0"; sha256="0yng347pnsrkbjgfw9xi20ms57kkbdgzh3sz3sj24dp6k0p5s3da"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; + sparsenetgls = derive2 { name="sparsenetgls"; version="1.18.0"; sha256="0gd7as4hsb8nfkqlk1kihwlm55rrdv36xl28zpxz7by6x9w92rjk"; depends=[glmnet huge MASS Matrix]; }; + spatialDE = derive2 { name="spatialDE"; version="1.6.0"; sha256="18fgyans15wnc63kzmv51yaxxd3vxjv3q9hgyrk9dz6kqx928mng"; depends=[basilisk checkmate ggplot2 ggrepel gridExtra Matrix reticulate scales SpatialExperiment SummarizedExperiment]; }; + spatialHeatmap = derive2 { name="spatialHeatmap"; version="2.6.0"; sha256="03cpwkz7glfkdlp9967ikgplcj42cw5gyby4w0v41mdyw3y353nk"; depends=[data_table dplyr dynamicTreeCut edgeR flashClust genefilter ggdendro ggplot2 ggplotify gplots gridExtra grImport htmlwidgets igraph Matrix plotly reshape2 rsvg S4Vectors scater scran scuttle shiny shinydashboard SingleCellExperiment SummarizedExperiment tibble UpSetR visNetwork WGCNA xml2 yaml]; }; + spatzie = derive2 { name="spatzie"; version="1.6.0"; sha256="0c460pdfm4ncijhqj47j08bdhgiiic9aha5dwz2bpl1fk4p5l8x1"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicFeatures GenomicInteractions GenomicRanges ggplot2 IRanges MatrixGenerics matrixStats motifmatchr S4Vectors SummarizedExperiment TFBSTools]; }; + specL = derive2 { name="specL"; version="1.34.0"; sha256="00b4iwq43f3jr8a3g1a86wwvka20zm4jb2lwfv140n4qw3fg294k"; depends=[DBI protViz RSQLite seqinr]; }; + speckle = derive2 { name="speckle"; version="1.0.0"; sha256="09hf4kb9s6dcv0532q13ikbbknj4x5il0rxgc34d4k3sbf8pph5s"; depends=[edgeR ggplot2 limma Seurat SingleCellExperiment]; }; + spicyR = derive2 { name="spicyR"; version="1.12.0"; sha256="1gnmzynqc1pnpyzb0481313hrq3dw8g6k5ka97shaldr2cv5c553"; depends=[BiocGenerics BiocParallel concaveman data_table dplyr ggforce ggplot2 IRanges lme4 lmerTest mgcv pheatmap rlang S4Vectors scam SingleCellExperiment SpatialExperiment spatstat_explore spatstat_geom SummarizedExperiment tidyr]; }; + spikeLI = derive2 { name="spikeLI"; version="2.60.0"; sha256="0mh24piab0gjcjk4lc3wji19lfx2mk0hch9p3wbqkahag6d4y785"; depends=[]; }; + spiky = derive2 { name="spiky"; version="1.6.0"; sha256="1lhv69z52pamzrp1pb9ccngdn4kkija4rb7g4vahp1wx7d5fbbja"; depends=[bamlss Biostrings BlandAltmanLeh BSgenome GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges Rsamtools S4Vectors scales]; }; + spkTools = derive2 { name="spkTools"; version="1.56.0"; sha256="14rqm15ym7vnzzqk2r4sa7fwa4a474y4i1jxzdy66aarf8nck57j"; depends=[Biobase gtools RColorBrewer]; }; + splatter = derive2 { name="splatter"; version="1.24.0"; sha256="1fmvm4n3xlib9bid8vxwsqlzfawsyv2mjvmic1g3zqz676x98gj9"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus locfit matrixStats rlang S4Vectors scuttle SingleCellExperiment SummarizedExperiment withr]; }; + splineTimeR = derive2 { name="splineTimeR"; version="1.28.0"; sha256="0qkxbpx2aih69qq4f8h14dqnmlpw77qiqg1xrpyc7lsvypqdfqn7"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; + splots = derive2 { name="splots"; version="1.66.0"; sha256="01c48k6isaryyb47ypmvxwyc2hskfrwgr1bvrix40l9h00zwlvn3"; depends=[RColorBrewer]; }; + spqn = derive2 { name="spqn"; version="1.12.0"; sha256="0lfinhfiirfql48fsrzsizzk5i1ls4xd5fflrb05awaayn92iwsx"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; + ssPATHS = derive2 { name="ssPATHS"; version="1.14.0"; sha256="0absjg8d980gcmlc7bgdz7w4y2apyy9ma1wxb4w4bcal110wlqcs"; depends=[dml MESS ROCR SummarizedExperiment]; }; + sscore = derive2 { name="sscore"; version="1.72.0"; sha256="02y684iaryms7099k9idrvw0my52jj3d4hl949ai1jknaa19hmil"; depends=[affy affyio]; }; + sscu = derive2 { name="sscu"; version="2.30.0"; sha256="0ch78vb166cfgmwsvdihkhrmalpd68qanyyws79nnlp1ibrjxzgp"; depends=[BiocGenerics Biostrings seqinr]; }; + ssize = derive2 { name="ssize"; version="1.74.0"; sha256="184qni9n8birdsrwb6mvsaj0jiivnbchcyzb6f8h4aw45hzz881i"; depends=[gdata xtable]; }; + ssrch = derive2 { name="ssrch"; version="1.16.0"; sha256="113jhlcvjkh3kqam9z1dvkf4x7s6mcm0h0w7ajs0krgn4cxyq9r6"; depends=[DT shiny]; }; + ssviz = derive2 { name="ssviz"; version="1.34.0"; sha256="0jkq07j74i9317ird6qmiy1lq7xhsv808pqnsah9xfqaf0p22kkm"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; + stJoincount = derive2 { name="stJoincount"; version="1.2.0"; sha256="0rqmbi7kjmmi7mza8cl4xj63vrj633yrdj1fl4fl9g4dmfxqjhkx"; depends=[dplyr ggplot2 magrittr pheatmap raster Seurat sp SpatialExperiment spdep SummarizedExperiment]; }; + staRank = derive2 { name="staRank"; version="1.42.0"; sha256="1jbgx9p681765dw74jdvdwn85viicdgd3gfpwbp37dn256wh2hl9"; depends=[cellHTS2]; }; + stageR = derive2 { name="stageR"; version="1.22.0"; sha256="0advih0g2g5w8bx9f21chz8a66f4v84qn3p5skxi084pp142v5ms"; depends=[SummarizedExperiment]; }; + standR = derive2 { name="standR"; version="1.4.0"; sha256="0mqggxz4w687vw4sl64x2zv8c5qncxk4mkxpsxfdnr6hk5kbgng4"; depends=[Biobase BiocGenerics dplyr edgeR ggalluvial ggplot2 limma mclustcomp patchwork readr rlang ruv RUVSeq S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment tibble tidyr]; }; + statTarget = derive2 { name="statTarget"; version="1.30.0"; sha256="02jqbxx9mk664s36pbq97lmppk8rcplsbd94zlmdwip2sknf8ix4"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; + stepNorm = derive2 { name="stepNorm"; version="1.72.0"; sha256="1j915bnmq1fsjdgn0rrlxmqvmy1cafyp5sc2gal81qrv366qy1ri"; depends=[marray MASS]; }; + strandCheckR = derive2 { name="strandCheckR"; version="1.18.0"; sha256="0gsnhx7vfi3p665fwyai8byz984j7ai6k8d7ilbpxi5f3v1qkjrk"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 rmarkdown Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + struct = derive2 { name="struct"; version="1.12.0"; sha256="1vf92g3lhq3ciy6sr9vwx4xzqpzf28np1nfc2f63d5dwcq24l8a9"; depends=[knitr ontologyIndex rols S4Vectors SummarizedExperiment]; }; + structToolbox = derive2 { name="structToolbox"; version="1.12.0"; sha256="1k5015r72d5clmdnbkvmkjkqrbvycyqrzvvxn9w841mcv3l3slpg"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; }; + subSeq = derive2 { name="subSeq"; version="1.30.0"; sha256="1p035a53129ax84cjyv1xx3gcq4940mr4ppakczqdbc8c3ch4d08"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; + supersigs = derive2 { name="supersigs"; version="1.8.0"; sha256="0ifj0558rcf3v6rwpl2i0bidbg1gv3q8calpn49s1jqayn57hiik"; depends=[assertthat Biostrings caret dplyr rlang rsample SummarizedExperiment tidyr]; }; + supraHex = derive2 { name="supraHex"; version="1.38.0"; sha256="1z216mrm59sgxf7kspscf26ic3qlrvpwjs013z10vsxrjwypkmw7"; depends=[ape dplyr hexbin igraph magrittr MASS purrr readr stringr tibble tidyr]; }; + surfaltr = derive2 { name="surfaltr"; version="1.6.0"; sha256="01i0siz28cvn00lsgb68wrcang6991xgx1h5f09vs9fz0p0qbiik"; depends=[biomaRt Biostrings dplyr ggplot2 httr msa protr readr seqinr stringr testthat xml2]; }; + survcomp = derive2 { name="survcomp"; version="1.50.0"; sha256="1va0ijx3qk3rjhzaflygfwlzn5a670y833qly8in8p5r3al9bdj6"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; + survtype = derive2 { name="survtype"; version="1.16.0"; sha256="1flin23qc0fm4hhchdi8ca6bbzn6n9n5i0bq18griynv5zvg72yg"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; }; + sva = derive2 { name="sva"; version="3.48.0"; sha256="1f6ia57fn2sn7c2zdfswvj9kx8xayssrgf5q6hrr9nrxc0jq19g3"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; }; + svaNUMT = derive2 { name="svaNUMT"; version="1.6.0"; sha256="0nc0k2g75hqdgg9mgvyq72jw70hnvnwy9frrrgwl9f0a370pf957"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; + svaRetro = derive2 { name="svaRetro"; version="1.6.0"; sha256="0ynpsmq3gxqz9jr97cmg93szanh3pk4sj6ydd15lgv9an6y7bpcq"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; + swfdr = derive2 { name="swfdr"; version="1.26.0"; sha256="0rzdmf4viyl9q3ma9awkk2q515i615fik15rssqgzxwcxigzdvnq"; depends=[]; }; + switchBox = derive2 { name="switchBox"; version="1.36.0"; sha256="11rrl6kdccfj5f7hcg2a3ba5xglldrj7jxghwcp9gw0bp2l25734"; depends=[gplots pROC]; }; + switchde = derive2 { name="switchde"; version="1.26.0"; sha256="1p7h4c9vk1gldw5r2i2g422frdsr3l8wzwn4jd5wkn9gdhrxhywa"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; + synapsis = derive2 { name="synapsis"; version="1.6.0"; sha256="1c34451qf8i81y6jq5qda5008w0sj89dbxy32fsx6pjqa5sg57fr"; depends=[EBImage]; }; + synapter = derive2 { name="synapter"; version="2.24.0"; sha256="0ial1wkyzbxnpail13bfnf436hyc6isn70vfsabx08xjbk7g5dyw"; depends=[Biobase Biostrings cleaver lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; + synergyfinder = derive2 { name="synergyfinder"; version="3.8.2"; sha256="0nppm9zisijvk6q8n1hzrixwl59c5v7z4ciffhll7jssjxb9n4l7"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; + synlet = derive2 { name="synlet"; version="2.0.0"; sha256="1fx91chj1nmj1nq2754z7i3qzwkz48sgz6y2xzp4r799l1zb86zx"; depends=[data_table ggplot2 magrittr patchwork RankProd RColorBrewer]; }; + syntenet = derive2 { name="syntenet"; version="1.2.2"; sha256="0zcfd2pqarrlfrv17idsap8p02i4hbna0s4s80dsj649l66a1f67"; depends=[Biostrings GenomicRanges ggnetwork ggplot2 igraph intergraph networkD3 pheatmap RColorBrewer Rcpp rlang rtracklayer testthat]; }; + systemPipeR = derive2 { name="systemPipeR"; version="2.6.0"; sha256="1yg650xkhmp6gcikiiv63g47k1xycg2mj8wxfnihgmlmlw4433yk"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; + systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.10.0"; sha256="0psnx7k59yi474fpb8c7q0cmvzrj0a498hpkw9xngi21j7967xl2"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; + systemPipeTools = derive2 { name="systemPipeTools"; version="1.8.0"; sha256="0i30ikhs2gdxnw1x05c878rdnpc2h213d9bf61j3ivvsmch45fnx"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; + tLOH = derive2 { name="tLOH"; version="1.8.0"; sha256="0pg5f0f45s5wig99nk4ih212bwavhdyl948caykphwy288n8j27f"; depends=[bestNormalize data_table depmixS4 dplyr GenomicRanges ggplot2 MatrixGenerics naniar purrr scales stringr VariantAnnotation]; }; + tRNA = derive2 { name="tRNA"; version="1.18.0"; sha256="0fwspbb1z453maf6rxg6il73y6ldwkh6qrfydcvpdqjwlfq76f3p"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; }; + tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.18.0"; sha256="12bsmdjvp8rak9nb6p0y39gnyxswaxg9czc6kkwz7mv5y2l2q0by"; depends=[BiocGenerics Biostrings GenomicRanges httr IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; }; + tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.20.0"; sha256="188vi9023hr2923hy0cxgb5am50wm8bzmakb6b2rwwahsl1mkgv3"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; }; + tRanslatome = derive2 { name="tRanslatome"; version="1.38.0"; sha256="1j7046gwlk1wlmqcmn4423pw3gsnjp8h3jbzjpqhnqh9k3v88ynj"; depends=[anota Biobase DESeq2 edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd topGO]; }; + tanggle = derive2 { name="tanggle"; version="1.6.0"; sha256="0ahcmgsfgcq2a59n6g8q2vnmnq6ycibgzghlxxb2vi3awixy1h2i"; depends=[ape ggplot2 ggtree phangorn]; }; + target = derive2 { name="target"; version="1.14.0"; sha256="1qmmddryy19vb1jjliliks2hb0vv23svrw2z9qfdm4fxwwwgc6w5"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; }; + tenXplore = derive2 { name="tenXplore"; version="1.22.0"; sha256="07vfx5yvgd749j111lbw0g2x9rdhs6h5mb6qf46j1k3r93hckax3"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; + ternarynet = derive2 { name="ternarynet"; version="1.44.0"; sha256="0rqsgpi559ihw7npf866bvxrzzvpgrjanzn0hzcxjgj95xvd39xn"; depends=[BiocParallel igraph]; }; + terraTCGAdata = derive2 { name="terraTCGAdata"; version="1.4.0"; sha256="1g8zbdw2ba901cclhgh758l541q3n4r1xz2jpfdib476grxvlmnv"; depends=[AnVIL BiocFileCache dplyr GenomicRanges MultiAssayExperiment RaggedExperiment readr S4Vectors TCGAutils tidyr]; }; + tidySingleCellExperiment = derive2 { name="tidySingleCellExperiment"; version="1.10.0"; sha256="0wvaghfnis93gmp3irc82sllh9qrfnly3ba21cvv3w70sysfxif1"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr Matrix pillar plotly purrr rlang S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr tidyselect ttservice vctrs]; }; + tidySummarizedExperiment = derive2 { name="tidySummarizedExperiment"; version="1.10.0"; sha256="192rvxd9lbwpddwy28b4021ihs1hxbfra376k6fdysjc7h34iilk"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect vctrs]; }; + tidybulk = derive2 { name="tidybulk"; version="1.12.0"; sha256="1fpqd7bhsvasfraclld5f7prxzpp74p89yyb38v3yjdk38by87ym"; depends=[crayon dplyr GenomicRanges lifecycle magrittr preprocessCore purrr readr rlang S4Vectors scales stringi stringr SummarizedExperiment tibble tidyr tidyselect]; }; + tigre = derive2 { name="tigre"; version="1.54.0"; sha256="15zfnn89g3i1rc1i31cgg355na1srnazmg6km2cwpa8dswna6kzi"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; + tilingArray = derive2 { name="tilingArray"; version="1.78.0"; sha256="0wj3wb4x9s0v189p20rlwghsx82x314yyhhsnfmrl266qb1ambrn"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; + timeOmics = derive2 { name="timeOmics"; version="1.12.0"; sha256="1gl00h8b9l90fgpa13fhbfaxgycni8x8w3z4qjyr69rfhfap1m7k"; depends=[dplyr ggplot2 ggrepel lmtest magrittr mixOmics plyr purrr stringr tibble tidyr]; }; + timecourse = derive2 { name="timecourse"; version="1.72.0"; sha256="1knflxz1j2pmbxdbxygzrl76rlmj738rvlsp1i2f3jzqrnqdc1hs"; depends=[Biobase limma marray MASS]; }; + timescape = derive2 { name="timescape"; version="1.24.0"; sha256="09jcq1iiq671alznik87a1mhnnrhcqx274vnlz2hkp6xkwvd8a4w"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; + tkWidgets = derive2 { name="tkWidgets"; version="1.78.0"; sha256="1xp0gdfrhhfzfww4ig3y90f7334y24rhzrmlxmm4wav8slvcran2"; depends=[DynDoc widgetTools]; }; + tomoda = derive2 { name="tomoda"; version="1.10.0"; sha256="1f7rgw6zm497v32mynhhl1ld2rbzqjlnqdi7vd22wb4rcy09vg88"; depends=[ggplot2 ggrepel RColorBrewer reshape2 Rtsne SummarizedExperiment umap]; }; + tomoseqr = derive2 { name="tomoseqr"; version="1.4.0"; sha256="060wgg4fympzx5vg452cpb8wdbwvczyx80dx5apgvf298dh7xnjd"; depends=[animation BiocFileCache dplyr ggplot2 plotly purrr readr shiny stringr tibble]; }; + topGO = derive2 { name="topGO"; version="2.52.0"; sha256="0avjjvih387qhw8n4vjz4jq66q7sicgacsw53b85lq2c6ppib662"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; + topconfects = derive2 { name="topconfects"; version="1.16.0"; sha256="1i37zbr8azfvvrrk95q7y2m69njgshy3adlkvvps7gyhn2jvlvnf"; depends=[assertthat ggplot2]; }; + topdownr = derive2 { name="topdownr"; version="1.22.0"; sha256="1z1inzbqv31g1by8p81x3bkn8fdx8k7hfkwmz1m8dhblz9xqk644"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; + trackViewer = derive2 { name="trackViewer"; version="1.36.2"; sha256="1ngfpd308y8i3vgv07cggk2azs64lsyyc9zfi3pz0gapr33ha6a1"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rgraphviz rhdf5 Rsamtools rtracklayer S4Vectors scales strawr]; }; + tracktables = derive2 { name="tracktables"; version="1.34.0"; sha256="0hpvk5l7nv9rsdmfv3kzc1jx5rjdqyv9n7k6lhvzkd4b9q2d25h6"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; + tradeSeq = derive2 { name="tradeSeq"; version="1.14.0"; sha256="14b90x9h34mhbc4sdpzkygrrswf84pi1ddwpzxhvlvr9gs443xqs"; depends=[Biobase BiocParallel edgeR ggplot2 igraph magrittr MASS Matrix matrixStats mgcv pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble TrajectoryUtils viridis]; }; + transcriptR = derive2 { name="transcriptR"; version="1.28.0"; sha256="0i38zs33drzk9szy2mdfs9ff9c3ccjgiyyynrrsinrx0szc8l22r"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; + transcriptogramer = derive2 { name="transcriptogramer"; version="1.22.0"; sha256="1kvs2idmx6ikpgmmb2pbd7g2b50bh020vq8c8ghwk7128r35qsc6"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; + transformGamPoi = derive2 { name="transformGamPoi"; version="1.6.0"; sha256="08f03bad2zpiqxw7mkbg7jggbk20zn84645k7z0qvdhw4rk59h0h"; depends=[DelayedArray glmGamPoi HDF5Array Matrix MatrixGenerics Rcpp SummarizedExperiment]; }; + transite = derive2 { name="transite"; version="1.18.0"; sha256="08s376j53hb9079n5cwz1qs0pmsz3qx9y3nq3jys0xk381z1gnr8"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; + transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.10.0"; sha256="1zbcv81d6qhbcw8zz8s3pd3grr39dg413x95k46q3491www84i5q"; depends=[dplyr KEGGREST purrr RCy3 tibble]; }; + traseR = derive2 { name="traseR"; version="1.30.0"; sha256="07l0aqkkgma10xhhihmiyqj7mb62jrmb4a6rw2gh91yj1dwqlzc9"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; + traviz = derive2 { name="traviz"; version="1.6.0"; sha256="1lsczylj86w2cq2hcknswzqdp4b298gcv6ljzdr9c8ir7ks2j55k"; depends=[Biobase ggplot2 mgcv princurve RColorBrewer rgl SingleCellExperiment slingshot SummarizedExperiment viridis]; }; + treeio = derive2 { name="treeio"; version="1.24.0"; sha256="0vix0mmx4idnxj2qaslgqrrgh97fk6p3g9p7lnf3l0915gwks1p1"; depends=[ape cli dplyr jsonlite magrittr rlang tibble tidytree]; }; + treekoR = derive2 { name="treekoR"; version="1.8.0"; sha256="1gsvs30n67vf3fqbm0d6zg5dxj2m1bi81gnm8vjg39413cqi63pc"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; }; + trena = derive2 { name="trena"; version="1.21.0"; sha256="04i4vjdcamjbw3mslnqk3ra2fk3432p9rj376chqapkj9anfpm82"; depends=[AnnotationDbi biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 WGCNA xgboost]; }; + tricycle = derive2 { name="tricycle"; version="1.8.0"; sha256="1ags05rhi431jsk0kqs7rmxj853mf5c0ibfqknbwy2wmbz8p1vq6"; depends=[AnnotationDbi circular dplyr GenomicRanges ggnewscale ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; + trigger = derive2 { name="trigger"; version="1.46.0"; sha256="0wviwgr1f8549rwg4hd80c1jri79fqwiylgkablx8h7izq5lk1fc"; depends=[corpcor qtl qvalue sva]; }; + trio = derive2 { name="trio"; version="3.38.0"; sha256="1jzsdwpc4wqvdqmqai7lc0hyvl7rq32442iihfhx31yhr78gqn1g"; depends=[LogicReg siggenes survival]; }; + triplex = derive2 { name="triplex"; version="1.40.0"; sha256="1gysg24h68k0l0q7f449qp5k9dn5q3c4m33jg0ff4qj98jrvprb7"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; + tripr = derive2 { name="tripr"; version="1.6.0"; sha256="0n26zffp64w7ccpv6hcng8fagy3zd7czv0fz94phz8gvl48rpbwd"; depends=[config data_table dplyr DT golem gridExtra plot3D plotly plyr RColorBrewer shiny shinyBS shinyFiles shinyjs stringdist stringr]; }; + tscR = derive2 { name="tscR"; version="1.11.0"; sha256="19jpmyb6dly7l0418c1z0dlb936wjh6nwkb0mvk13ym19qgv1my7"; depends=[class cluster dplyr dtw GenomicRanges ggplot2 gridExtra IRanges knitr latex2exp prettydoc RColorBrewer rmarkdown S4Vectors SummarizedExperiment]; }; + ttgsea = derive2 { name="ttgsea"; version="1.8.0"; sha256="0r34f1k3f972pb7x1a376ysscazspdgnyid3vc41rimgvl9p03rg"; depends=[data_table DiagrammeR keras purrr stopwords text2vec textstem tm tokenizers]; }; + tweeDEseq = derive2 { name="tweeDEseq"; version="1.45.0"; sha256="0zyhxnim8n638m7ik57lzhvqhjrzynww25ag4j282mhy3mmpiy0a"; depends=[cqn edgeR limma MASS]; }; + twilight = derive2 { name="twilight"; version="1.76.0"; sha256="0xhwykvb9rgsj13ivfjlal4ffhms9sglh9h61h8448r9g58kgibz"; depends=[Biobase]; }; + twoddpcr = derive2 { name="twoddpcr"; version="1.24.0"; sha256="0klikcpvpd7dm6ssyv08vd1iv5hhas5a2b7wjkapn2p2j43b214n"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; + txcutr = derive2 { name="txcutr"; version="1.6.0"; sha256="1xbpyvcs1r7z5h0khl3avz3rnc8422fsyqvfpiwhy45icqwvlpbq"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors]; }; + tximeta = derive2 { name="tximeta"; version="1.18.0"; sha256="03dmnpfffj18c6009qg985i596l4ckf3myin12g2p6xr56880bz1"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; }; + tximport = derive2 { name="tximport"; version="1.28.0"; sha256="0km1vfn4jcp05jk5srrqanjngq6ghh5im6h1c424b926g9s7w7k1"; depends=[]; }; + uSORT = derive2 { name="uSORT"; version="1.26.0"; sha256="0mqf481niq5md6ld0mki4iif4vhpnjk57896vaqvjzwjdhnw8n2b"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; + uncoverappLib = derive2 { name="uncoverappLib"; version="1.10.0"; sha256="063iblr2mal7wsci52zhd51hpjmxm5jbz08f3i2yxc6z72qi97nd"; depends=[BiocFileCache condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools S4Vectors shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.36.0"; sha256="1gza678sd5m2rbki0l5hniki6gmds2cljkmywmk5v5m9swh9azq7"; depends=[BiocGenerics HTqPCR]; }; + universalmotif = derive2 { name="universalmotif"; version="1.18.0"; sha256="0v7c624y2sbqs6mc6kd6dynx24zakcilaswssxmplrcx15im87cn"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS MatrixGenerics Rcpp RcppThread rlang S4Vectors yaml]; }; + updateObject = derive2 { name="updateObject"; version="1.4.0"; sha256="1d9pdacnvhz3dknzvb05hylvsy0fasr6fk6k69aa5q6wlm6p8w7r"; depends=[BiocGenerics digest S4Vectors]; }; + variancePartition = derive2 { name="variancePartition"; version="1.30.0"; sha256="052xay39bzxyn0li631zy2nl08vp7q85q4phigwswpavfhl4w71g"; depends=[aod Biobase BiocParallel doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS Matrix pbkrtest progress Rdpack remaCor reshape2 RhpcBLASctl rlang scales]; }; + vbmp = derive2 { name="vbmp"; version="1.68.0"; sha256="08xjyabaircbd9wscrkhb3il66s28z5qsb7rk1978pj41acpk1bv"; depends=[]; }; + velociraptor = derive2 { name="velociraptor"; version="1.10.0"; sha256="0rqrz71yjwf51my13gp09fdidrx10bchkgdcjx2ma3pzw0xhhvry"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; }; + veloviz = derive2 { name="veloviz"; version="1.6.0"; sha256="1bq54xaqw3h1556k2sx3hx66drpinjg6fcgidnb94bjmfr1jyh4m"; depends=[igraph Matrix mgcv Rcpp RSpectra]; }; + vidger = derive2 { name="vidger"; version="1.20.0"; sha256="0swis799xk389dnmc3kbxpfxg0p7l1dq3xnr9ic7yvsca2rgx6na"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; + viper = derive2 { name="viper"; version="1.34.0"; sha256="01flc6k6l1fa4zqxfvq5idclw2wsm739pj7kh5f4ismiaz8jw0dp"; depends=[Biobase e1071 KernSmooth mixtools]; }; + vissE = derive2 { name="vissE"; version="1.8.0"; sha256="0xfsh4f5gsgzd53pnmqfp06p2sym4q2pid7y0i7bb28p71nr1pqq"; depends=[ggforce ggplot2 ggraph ggrepel ggwordcloud GSEABase igraph msigdb plyr RColorBrewer reshape2 scales scico textstem tidygraph tm]; }; + vsclust = derive2 { name="vsclust"; version="1.2.0"; sha256="08pqvbsa37jpdyrb85w6ynv66qcprpi69ki1nxi76dg5nv1a42r8"; depends=[limma matrixStats MultiAssayExperiment qvalue Rcpp shiny]; }; + vsn = derive2 { name="vsn"; version="3.68.0"; sha256="0i6c0wyhj0gcq0mw13zyk60cza2baq4yrj1n2dzqgsqkmhm5lfla"; depends=[affy Biobase ggplot2 lattice limma]; }; + vtpnet = derive2 { name="vtpnet"; version="0.40.0"; sha256="04h648sripvywxx0mz4bv79g2j3n053ascvgmjq5v35y0ijcxnx4"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; + vulcan = derive2 { name="vulcan"; version="1.22.0"; sha256="0dhhrjb2vjplphpbxwz0bkcjcdf20qj7mlj21ppp5w4xsy6bvbb5"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq2 DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; + waddR = derive2 { name="waddR"; version="1.14.0"; sha256="1j3b1ml782qva44m66pg5wfb4b2f39w8r9wihx4djh1sm3q8kqpl"; depends=[arm BiocFileCache BiocParallel eva Rcpp RcppArmadillo SingleCellExperiment]; }; + wateRmelon = derive2 { name="wateRmelon"; version="2.6.0"; sha256="0qslh2xhhyaf0nsgcqav6qgh05n8kp0s6p1zggc02iid30i1ibrj"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; + wavClusteR = derive2 { name="wavClusteR"; version="2.34.0"; sha256="0491x3m0015g83m6a7pkc4783768clgykhlcmd2xr6cgrhih10g2"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; }; + weaver = derive2 { name="weaver"; version="1.66.0"; sha256="1c51353nl54h5gf2srfvqx1ybdf1s9j8wsicmilz8jrvyq8dca13"; depends=[codetools digest]; }; + webbioc = derive2 { name="webbioc"; version="1.72.0"; sha256="0z2sixzs0rwdwdhxs5mqzghgiw4g64l8p9ag5lw289bzs4c4kqnd"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; + weitrix = derive2 { name="weitrix"; version="1.12.0"; sha256="1n7bzsbi8zz75vklj61qqc8l01qcvni7q9l3n2mmjp48iwrh2l94"; depends=[assertthat BiocGenerics BiocParallel Ckmeans_1d_dp DelayedArray DelayedMatrixStats dplyr ggplot2 glm2 limma purrr reshape2 RhpcBLASctl rlang S4Vectors scales SummarizedExperiment topconfects]; }; + widgetTools = derive2 { name="widgetTools"; version="1.78.0"; sha256="03bvh2jk97jj40z35q5n1is2wxrs4dggw08ndyywy4pzx1diqdc4"; depends=[]; }; + wiggleplotr = derive2 { name="wiggleplotr"; version="1.24.0"; sha256="15gbs10bi1alxxbxaj4h3hzfgck4nxygy896y34x81w1rn7in3vp"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; + wpm = derive2 { name="wpm"; version="1.10.0"; sha256="0zyifhqxssbwmmznsyxmjpnswklpdvp6f770wf08qja0lndj5pgk"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; }; + wppi = derive2 { name="wppi"; version="1.8.0"; sha256="06y4pq8msjzwrw1jgyj9yskgpfhvcz54qcsv0h14bakhyrwk00pg"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; }; + xcms = derive2 { name="xcms"; version="3.22.0"; sha256="112g2lpi074cr8g09cqwjbcwv9aw4djr7ashxpnxjycd3ayc0j3v"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MsFeatures MSnbase multtest mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors SummarizedExperiment]; }; + xcore = derive2 { name="xcore"; version="1.4.0"; sha256="0bxk4cmr36yz7kpnl3lbykq2qj6wfw0sk3h88b1ccrd2y58b7kl3"; depends=[DelayedArray edgeR foreach GenomicRanges glmnet IRanges iterators magrittr Matrix MultiAssayExperiment S4Vectors]; }; + xmapbridge = derive2 { name="xmapbridge"; version="1.58.0"; sha256="09pskmhjymqvhk26mk5yy1k195v536a2qp4k6xdd67xhf5ag260i"; depends=[]; }; + yamss = derive2 { name="yamss"; version="1.26.0"; sha256="0kjlp62s2393jdwp0crizsgp4iqagbgnd3hdl9vpbr9qrjxg4s7m"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; + yarn = derive2 { name="yarn"; version="1.26.0"; sha256="0ddfl4jp0n8sb665hcpsij959fl28rj22n1h61wp2374kpc0fwfj"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; + zFPKM = derive2 { name="zFPKM"; version="1.22.0"; sha256="1fkzyq282xafyapgi5xi1c2dmfkyikqvf622pycjs80fas38044h"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; + zellkonverter = derive2 { name="zellkonverter"; version="1.10.1"; sha256="1p89i2dfwcgrdchdnxrywp3jjjn5jjs5bisrx5kav26yh2pyx1wk"; depends=[basilisk cli DelayedArray Matrix reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; + zenith = derive2 { name="zenith"; version="1.2.0"; sha256="0c2lq0gql1022r2zr5j87bkhc1q3aw0cvr3bq4f6rp743iy7dbrs"; depends=[EnrichmentBrowser ggplot2 GSEABase limma msigdbr progress Rdpack reshape2 Rfast tidyr variancePartition]; }; + zinbwave = derive2 { name="zinbwave"; version="1.22.0"; sha256="1bmxbzpgmwama42a3vi1n0sic166v5zs0kl9mhmrh0rrx0nv303k"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; + zlibbioc = derive2 { name="zlibbioc"; version="1.46.0"; sha256="0x3d5kihckqnfjkc7dxk6mc194vwwr03jfjx2qh15g5494gfmm53"; depends=[]; }; ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.24.0"; sha256="1sp3f72rzlr822dxx42bswynrwwfx6f520hdhfdikqp13p2y4044"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; broken = true; }; ALPS = derive2 { name="ALPS"; version="1.5.0"; sha256="1aydvzc6x0871iasij68xqdlhjyg69qbqxm0qh1q52w8gj2nyq3p"; depends=[assertthat BiocParallel ChIPseeker corrplot data_table dplyr genefilter GenomicRanges GGally gghalves ggplot2 ggseqlogo Gviz magrittr org_Hs_eg_db plyr reshape2 rtracklayer stringr tibble tidyr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; broken = true; }; + ASpediaFI = derive2 { name="ASpediaFI"; version="1.11.0"; sha256="13jny6ca8hdf269z37baaggfs7jss00ln09apn42pj411g3p7nms"; depends=[BiocParallel biomaRt dplyr DRaWR e1071 fgsea GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz igraph IRanges IVAS limma Matrix reshape2 ROCR Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; broken = true; }; + AffyCompatible = derive2 { name="AffyCompatible"; version="1.58.0"; sha256="1bg7iqasvfsgd9x3ykgpblqnz1q06g3ifmzj4jf2kn8kxj63wfbl"; depends=[Biostrings RCurl XML]; broken = true; }; + ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.47.0"; sha256="0fndc7xifzj2wq8si8q8zjjkly5ckgr28jrm3m887s7kivbvjzvv"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer Rhtslib rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; broken = true; }; Autotuner = derive2 { name="Autotuner"; version="1.7.0"; sha256="0k07gs6bnxs0894iqi1lhk96mifjcdf68bv4q9fjv50nzqpzqd8l"; depends=[assertthat Biobase cluster entropy MSnbase mzR RColorBrewer scales]; broken = true; }; + BAC = derive2 { name="BAC"; version="1.58.0"; sha256="00dkhns9n1x4wmlxjcw75h7iwwk37zlv1c2fi0g1mmsw1xvdjzp6"; depends=[]; broken = true; }; BioPlex = derive2 { name="BioPlex"; version="1.2.3"; sha256="0cn0x6ij2a3xy61bq0qy5amp0ipj4r4shh7g0vlwbkrclj9w347r"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; broken = true; }; + BitSeq = derive2 { name="BitSeq"; version="1.41.0"; sha256="185cssrvaw2x0r3y5fqnfqm31924ccwg33qpj3v8ywrh3x7qn22p"; depends=[IRanges Rhtslib Rsamtools S4Vectors]; broken = true; }; + BrainSABER = derive2 { name="BrainSABER"; version="1.8.0"; sha256="1nxcjvaip7pp387bhdc2pmjai3chib1n63ig0cslhppzzjp2y6jd"; depends=[BiocFileCache biomaRt data_table lsa S4Vectors shiny SummarizedExperiment]; broken = true; }; CAnD = derive2 { name="CAnD"; version="1.27.0"; sha256="14x0m5iv7dm1iii5zsny9wnf4j5ddh0kij2jm658r3i4wnc99mkb"; depends=[ggplot2 reshape]; broken = true; }; + CancerInSilico = derive2 { name="CancerInSilico"; version="2.18.0"; sha256="0szbz88wnr3dbf7k9bhihv6hkr29gsp9vrllr201wx5qfzl2gncy"; depends=[BH Rcpp]; broken = true; }; CompGO = derive2 { name="CompGO"; version="1.28.0"; sha256="16nlrk9wbxj51y8s7s58mdhpi70ghfacxi283406gwya3cm79f0n"; depends=[GenomicFeatures ggplot2 pathview pcaMethods reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; broken = true; }; + CopywriteR = derive2 { name="CopywriteR"; version="2.29.0"; sha256="1h4cyrjwdazgk49yzi9lvya8bfz9r4cpq19hyzikvc81ia8zdxs6"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; broken = true; }; CountClust = derive2 { name="CountClust"; version="1.21.0"; sha256="17px9jkpjwz0j2f5h8xv52wh24ilqvlb6dvczjc36lb7mq4cw3sq"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; broken = true; }; CytoTree = derive2 { name="CytoTree"; version="1.6.0"; sha256="1dsdhwjkd3ngnw50fs6vz048afk47r95vhi0wqj8sip11nhndkd8"; depends=[Biobase BiocNeighbors cluster destiny flowCore FlowSOM flowUtils ggplot2 gmodels igraph limma Matrix matrixStats mclust pheatmap prettydoc RANN Rcpp Rtsne scatterpie scatterplot3d stringr sva umap]; broken = true; }; + DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.18.0"; sha256="12gw9b0gdwyih51j2gzay6vxhycgc52n8svd0slv6wsbw5rc19lh"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; broken = true; }; EasyqpcR = derive2 { name="EasyqpcR"; version="1.31.0"; sha256="0lb2px789668fr1gxghycy7lbdkpwmippv6xmmwws6rbanvfd6v4"; depends=[matrixStats plotrix plyr]; broken = true; }; - EnMCB = derive2 { name="EnMCB"; version="1.8.2"; sha256="1kna7s4rz5mlaj7vwc0mrzaziadvai7zq8ajiy4jya8xw78llyw4"; depends=[BiocFileCache boot e1071 ggplot2 glmnet igraph Matrix mboost rms survival survivalROC survivalsvm]; broken = true; }; FindMyFriends = derive2 { name="FindMyFriends"; version="1.23.0"; sha256="0xbhl6ljxb522r5062vv6xdziaaqkkwylmvlymvc5f1grjz0a4z9"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; broken = true; }; FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.23.0"; sha256="04lk2cahf6zqnhpzh0zwas4vmvaz4kcik9ri65bs9d9ximzjam91"; depends=[jsonlite RCurl XML]; broken = true; }; GAPGOM = derive2 { name="GAPGOM"; version="1.11.0"; sha256="0sl97w5zx4zdrdbcwayqyvgxspaxpbils3mpsrim0zlspjrjcy6z"; depends=[AnnotationDbi Biobase BiocFileCache data_table dplyr fastmatch GEOquery GO_db GOSemSim graph igraph magrittr Matrix matrixStats org_Hs_eg_db org_Mm_eg_db plyr RBGL]; broken = true; }; GCSConnection = derive2 { name="GCSConnection"; version="1.7.0"; sha256="1psmw3825whyzvbzqpqksgcl09b6kfyb8k5vny6ljkjbac1jzvnf"; depends=[googleAuthR googleCloudStorageR httr jsonlite Rcpp]; broken = true; }; GCSFilesystem = derive2 { name="GCSFilesystem"; version="1.6.0"; sha256="0qk8xyg06f71y4r1q1zpcj89irh9i6cd9z6nqlx635x8if84sh6d"; depends=[]; broken = true; }; + GRridge = derive2 { name="GRridge"; version="1.22.0"; sha256="0vmwm50dwk3im3qx40vh9ipmfqywzz5fmmm79b74zjcd3qjrznf3"; depends=[glmnet graph Iso mvtnorm penalized survival]; broken = true; }; + GeneAccord = derive2 { name="GeneAccord"; version="1.15.0"; sha256="1dlnqdcrl1fv5yf0zwfgkqfd2x19fv6q84p7c730nmnnaqal6md1"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; broken = true; }; GeneAnswers = derive2 { name="GeneAnswers"; version="2.36.0"; sha256="1f8q3hi913khyy1cc3yp2635gaik47alsqmhi0mi24cy340faplz"; depends=[annotate Biobase downloader Heatplus igraph KEGGREST MASS RBGL RColorBrewer RCurl RSQLite XML]; broken = true; }; + GeneGA = derive2 { name="GeneGA"; version="1.48.0"; sha256="136z3sxjps1k63ivr0cmqg7xkvbzf7j69vwkfbc1n00yfapiprm2"; depends=[hash seqinr]; broken = true; }; GenoGAM = derive2 { name="GenoGAM"; version="2.11.0"; sha256="058qix2h0zm2k9csmbdhci2wqih3lyggjj591cqn0ls2nv7bnyvj"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; broken = true; }; IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.31.0"; sha256="1w7zxsvmcrz8cj8g8xa1vqbzfycdhgsclhcjmkqjw1hwz6fp3xgn"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust RColorBrewer Rcpp relimp tkrplot xlsx]; broken = true; }; + LowMACA = derive2 { name="LowMACA"; version="1.28.0"; sha256="0j5233xziszwak65rypd9f8lsp25sdr4j5nm5kanj4d4wd0zsdqv"; depends=[BiocParallel Biostrings cBioPortalData data_table gridBase httr LowMACAAnnotation motifStack plyr RColorBrewer reshape2 stringr]; broken = true; }; MACPET = derive2 { name="MACPET"; version="1.15.1"; sha256="0742i3fxg2793lhgpxb4whh6mwvzd4bn86ykd0rv8sgilxyq5zsl"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; broken = true; }; + MIGSA = derive2 { name="MIGSA"; version="1.21.0"; sha256="0b7w9lzi8xb1vzh7zahw7wh9jm7x1y04rs2gvvjmfbdfw085rdpm"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev jsonlite limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz vegan]; broken = true; }; MSEADbi = derive2 { name="MSEADbi"; version="1.2.0"; sha256="1g1kg3nh7iwg5nrpmig6srw6as4yfwmbqn965pffrk0zp19llsbf"; depends=[AnnotationDbi Biobase DBI RSQLite]; broken = true; }; MSGFgui = derive2 { name="MSGFgui"; version="1.28.0"; sha256="0dkj2nbv5xv4v4bbmf91av0ryh9pxdfp7fmbqlma4xyf1r7zmx4c"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; broken = true; }; MSGFplus = derive2 { name="MSGFplus"; version="1.28.0"; sha256="1k0qm049gk4gjhd88zhxxrpc944r7ndq8dys08ai2kbaqignvb7y"; depends=[mzID ProtGenerics]; broken = true; }; MSstatsTMTPTM = derive2 { name="MSstatsTMTPTM"; version="1.1.2"; sha256="16qnddwhwhjjfr5akdrmp93gkxq2r41s82hb1blbz47lwbj5kaj5"; depends=[dplyr ggplot2 gridExtra MSstatsTMT Rcpp reshape2 stringr]; broken = true; }; + MethCP = derive2 { name="MethCP"; version="1.11.0"; sha256="099jaadjfalvxpwq3k630yrqa1dfbp8rqn2fahz1rsha3y5z9bys"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; broken = true; }; + NBSplice = derive2 { name="NBSplice"; version="1.15.0"; sha256="0yn7s7igshall34cflmdwvmknv8h1zdi6vg8svvcyn9fvzlgjdm8"; depends=[BiocParallel car edgeR ggplot2 MASS reshape2]; broken = true; }; + NewWave = derive2 { name="NewWave"; version="1.8.0"; sha256="13zwn5qzh9mjhp6d72yndymwbmi4hb7s8qg6ji0nmqp53gj30lc8"; depends=[BiocSingular DelayedArray irlba Matrix SharedObject SingleCellExperiment SummarizedExperiment]; broken = true; }; PSICQUIC = derive2 { name="PSICQUIC"; version="1.34.0"; sha256="0gkkxxbc2a7cin92qwn1masqfigyz9s4fhyy2daa17r3ckk4ccgx"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; broken = true; }; PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.22.0"; sha256="0rhx2jc5kc9bl00v16frh8b4075n0jqn4s37pkvqp3ypcbqws32d"; depends=[igraph jsonlite pcaMethods shiny]; broken = true; }; + PoTRA = derive2 { name="PoTRA"; version="1.13.0"; sha256="1a32d1wndb24pxza3h53yddj9z2clff5srny2k00pbbfq1h99mjf"; depends=[BiocGenerics graph graphite igraph org_Hs_eg_db]; broken = true; }; PrecisionTrialDrawer = derive2 { name="PrecisionTrialDrawer"; version="1.11.0"; sha256="1miw8rj1zn1xv97dkgs66k9g21i6gp3j2m1l1akysskczgam3i2c"; depends=[BiocParallel biomaRt brglm data_table DT GenomicRanges ggplot2 ggrepel googleVis httr IRanges jsonlite LowMACAAnnotation magrittr matrixStats RColorBrewer reshape2 S4Vectors shiny shinyBS stringr XML]; broken = true; }; ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.24.0"; sha256="0qs5hbx7pww7qxxaimp2xqvs3lwcd41ndls0xcvvlk7pnp4i4sk8"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; broken = true; }; PubScore = derive2 { name="PubScore"; version="1.8.0"; sha256="18bmzvv6mxrdlh297i29q24vi5rc4x2mjaryi5asiki186x0hy8d"; depends=[dplyr ggplot2 ggrepel igraph intergraph network progress rentrez sna]; broken = true; }; RGalaxy = derive2 { name="RGalaxy"; version="1.38.0"; sha256="0vfsn8cj5c8n58ra1qz85gwmm1747lm3xdz17m20f73g8q78nymd"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; broken = true; }; + RNASeqR = derive2 { name="RNASeqR"; version="1.16.0"; sha256="0m7d3mm644n81630v2m6vv7798x3rjshb9jcp63xq631j1wmk63i"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; broken = true; }; + Rcade = derive2 { name="Rcade"; version="1.39.1"; sha256="05cli4h96xcsf6xas9z5ma8bzh10grlwkfgmz4a115ykblwyaj4r"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; broken = true; }; Rgin = derive2 { name="Rgin"; version="1.15.0"; sha256="1x5zj2d5rvsr2xh0ifpnrys9v91dal1xxhv5mmk16rs8wzwqpqba"; depends=[RcppEigen]; broken = true; }; RmiR = derive2 { name="RmiR"; version="1.49.0"; sha256="16nwh4a97qvyicm4f102xs52lx8cld0b80fykgil86kkd6v8zlja"; depends=[DBI RmiR_Hs_miRNA]; broken = true; }; - Rnits = derive2 { name="Rnits"; version="1.29.0"; sha256="0m6afic9p7synmngkn7zyf53saqnrmgydjbk41k0w814i46dcd6h"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; broken = true; }; RpsiXML = derive2 { name="RpsiXML"; version="2.38.0"; sha256="0x4nph4xss4piq4fgijjjj33yrqqfdbsgn9wvqy17nglvz5gi7bi"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; broken = true; }; SLGI = derive2 { name="SLGI"; version="1.54.0"; sha256="03jwdq4k44rys3f773c6l985a6v1bacbdghw97p0qpwspmzra8rs"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice]; broken = true; }; + STAN = derive2 { name="STAN"; version="2.26.2"; sha256="0dd4hb2iabvnr6v0ys4jslj7611z1hii8hxkdvwrjbz4nn678wkv"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; broken = true; }; ScISI = derive2 { name="ScISI"; version="1.65.0"; sha256="0q3bbfsink5d8xslhp129qwvlq5mdzw8zkv9msd0q8qmkclsbiz1"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; broken = true; }; + SharedObject = derive2 { name="SharedObject"; version="1.12.0"; sha256="11rrnm7kjm6z8j4ga88s4cafcdj83pvhnybp7ns5pn7s2ln8044d"; depends=[BH BiocGenerics Rcpp]; broken = true; }; Sushi = derive2 { name="Sushi"; version="1.34.0"; sha256="0adswrbzd93rhy3q56ypwkrk6155vd4zxapvznswyjlxp8ha813q"; depends=[biomaRt zoo]; broken = true; }; SwimR = derive2 { name="SwimR"; version="1.29.0"; sha256="0n58x3i4k3icvhg8z60zlhpszv8bb9pain07nl9rszyvmpi71vg2"; depends=[gplots R2HTML signal]; broken = true; }; + TCC = derive2 { name="TCC"; version="1.38.0"; sha256="17kkn8xfkf7g8y51nnzsrgn8v65qlh8a4jysn03phk7pnfrmj7jl"; depends=[baySeq DESeq2 edgeR ROC]; broken = true; }; + TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.23.0"; sha256="16757szccczlv1q35y1cnmlkr12s46f63z7ijffpb15q85xlaqdx"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; broken = true; }; + TDARACNE = derive2 { name="TDARACNE"; version="1.47.0"; sha256="19zf7x2wcfnij1nlh623kim63d6wb3p42mwsn35msds778jvcbxq"; depends=[Biobase Rgraphviz]; broken = true; }; TSRchitect = derive2 { name="TSRchitect"; version="1.20.0"; sha256="1v9zz8ny9rwkyz98cv49l9ilh68h8mvm2x44n8i8rvjayc50zi9i"; depends=[AnnotationHub BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges readxl Rsamtools rtracklayer S4Vectors SummarizedExperiment]; broken = true; }; + TarSeqQC = derive2 { name="TarSeqQC"; version="1.28.0"; sha256="14ima8ymdb91lpkhdnsg6q7ajxs5p1xzzcsjfhixxkm341k45j35"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; broken = true; }; TimeSeriesExperiment = derive2 { name="TimeSeriesExperiment"; version="1.13.0"; sha256="0bdpxxr739qdg92qabfx122k9f43vw2hyxp4yxqlbp37vzgcdf2c"; depends=[DESeq2 dplyr dynamicTreeCut edgeR ggplot2 Hmisc limma magrittr proxy S4Vectors SummarizedExperiment tibble tidyr vegan viridis]; broken = true; }; + TraRe = derive2 { name="TraRe"; version="1.5.0"; sha256="06w5rk2wjam5dhiya9n6kjbjahw4i46cb05zvakcy0f8gwrvb9ic"; depends=[BiocParallel dqrng ggplot2 glmnet gplots gtools hash igraph matrixStats pvclust R_utils SummarizedExperiment]; broken = true; }; + Travel = derive2 { name="Travel"; version="1.6.0"; sha256="074v9hl4gzy8081mlas3mjaplchjrmk2bl4f5nkdjclh46xf3wgg"; depends=[Rcpp]; broken = true; }; XCIR = derive2 { name="XCIR"; version="1.7.0"; sha256="0n42pw01wv1sk06hby9kwijx6zwaw4lrlpsa0wlkrkf323slkllw"; depends=[biomaRt data_table ggplot2 IRanges readxl S4Vectors seqminer VariantAnnotation]; broken = true; }; affyPara = derive2 { name="affyPara"; version="1.51.0"; sha256="01165f84snc3ksk0ghw631i2l5jklp4n826jwy5926wvxy3zlwz0"; depends=[affy affyio aplpack snow vsn]; broken = true; }; alsace = derive2 { name="alsace"; version="1.30.0"; sha256="17adr64g3l2syj0shi57nrvx105w7wrkiqm0qp3hwlk1ivmnadzn"; depends=[ALS ptw]; broken = true; }; + baySeq = derive2 { name="baySeq"; version="2.31.0"; sha256="0lq2wfm3ibrpha9mqhhp6dgsx4jm2kwxvvrj0b62dzqspvg743wh"; depends=[abind edgeR GenomicRanges]; broken = true; }; + biomvRCNS = derive2 { name="biomvRCNS"; version="1.38.0"; sha256="0n026b744ah5kcnipsyiqqs7vlz5n5im1kgv35i2pgxyzvf7a8sn"; depends=[GenomicRanges Gviz IRanges mvtnorm]; broken = true; }; + bridge = derive2 { name="bridge"; version="1.62.0"; sha256="02rf15f3r1kazxml8mk9mi1zxgglsdfrpbg7ny9w0s65f413grg8"; depends=[rama]; broken = true; }; caOmicsV = derive2 { name="caOmicsV"; version="1.25.0"; sha256="10i4imjihmssdwfys21fsqng8zfp7sxzkc58m8qmnh6s5sccb3sz"; depends=[bc3net igraph]; broken = true; }; + cellTree = derive2 { name="cellTree"; version="1.27.0"; sha256="0yfr59fcbdj03ikkpvw1qcxqrjbkz7nkfmb5m1xr4k9qs39bq9sb"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; broken = true; }; clonotypeR = derive2 { name="clonotypeR"; version="1.34.0"; sha256="15nnj6c23bcnln1xsmxs7f13m13lvn6did7lvp7ij8gcb0vg2g6q"; depends=[]; broken = true; }; + clusterSeq = derive2 { name="clusterSeq"; version="1.22.0"; sha256="05ap73pyax6nfb474d2xda5279c8z84pvkshzxwp1q3rb8fn4s6d"; depends=[baySeq BiocGenerics BiocParallel]; broken = true; }; + coexnet = derive2 { name="coexnet"; version="1.19.1"; sha256="0zw8a8pqmajqnv5n6i7fn7krwax81sd4c6wqm4zr61fy2blqzv3h"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; broken = true; }; + conclus = derive2 { name="conclus"; version="1.5.0"; sha256="09rk73sxqxsy0zq07n67jxqbzb1rlxlj0phg6987szdjwxmag6jc"; depends=[AnnotationDbi Biobase BiocFileCache biomaRt clusterProfiler dbscan doParallel dplyr factoextra foreach fpc GEOquery ggplot2 gridExtra org_Hs_eg_db org_Mm_eg_db pheatmap rlang Rtsne scales scater scran SingleCellExperiment stringr SummarizedExperiment]; broken = true; }; + copynumber = derive2 { name="copynumber"; version="1.38.0"; sha256="1a664bllaq9pbb5cpd01j919qirylvnm8qd49lwlz89jvqjdri19"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; broken = true; }; ctgGEM = derive2 { name="ctgGEM"; version="1.7.0"; sha256="0hmapz96r024r3bws1wf0spd0i81viyma859y9nn93jrwxscrcdb"; depends=[Biobase BiocGenerics igraph Matrix monocle sincell SummarizedExperiment TSCAN]; broken = true; }; + deco = derive2 { name="deco"; version="1.13.0"; sha256="0d4abif3v62cbas6hl7pfw8q8jihh7nsra76k9cm6kz54qw4fbnw"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; broken = true; }; diffloop = derive2 { name="diffloop"; version="1.24.0"; sha256="0v0jg9y08xzw775x2lm82ig1ag4wjf4z2l6a66zmk6qbn59dwj1g"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; broken = true; }; dualKS = derive2 { name="dualKS"; version="1.53.0"; sha256="16cfcylmmcj8x2808529lbpm7qbbrxygic0jkaglhqcdxgrqw3rw"; depends=[affy Biobase]; broken = true; }; + epihet = derive2 { name="epihet"; version="1.13.0"; sha256="1p5sgb438yj6h0fv0v17dhz1pl32vai5zcbmgpgagrd5829a6a7r"; depends=[data_table doParallel foreach GenomicRanges ggplot2 igraph IRanges pheatmap qvalue ReactomePA Rtsne S4Vectors WGCNA]; broken = true; }; + flowCL = derive2 { name="flowCL"; version="1.35.0"; sha256="1jxr0zn3fgm5nqishssxh332mmxfz3fc9zgshn0lbq4avxc2x128"; depends=[graph Rgraphviz]; broken = true; }; flowUtils = derive2 { name="flowUtils"; version="1.59.0"; sha256="11x362dqb9mjlsbq6g1qkb8hhnkvm22z5s3wkgmpyy9kyifjkm26"; depends=[Biobase corpcor flowCore graph RUnit XML]; broken = true; }; gaia = derive2 { name="gaia"; version="2.39.0"; sha256="023mw2dy6dni7h7a1ild1y6l741kp9bmjzzfyi70jipji1jig4pa"; depends=[]; broken = true; }; + gcatest = derive2 { name="gcatest"; version="1.28.2"; sha256="1f2bp16x7ji9sh5kk150w57gqpbrisrb0xlkjv8wnd63j0vnng3l"; depends=[lfa]; broken = true; }; + genotypeeval = derive2 { name="genotypeeval"; version="1.30.0"; sha256="0mi1d86i4v8gafwszy978n61s5pszrsmbh1in4nggdqwvwnvkqnl"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; broken = true; }; genphen = derive2 { name="genphen"; version="1.24.0"; sha256="1m60qagcxviix4zjzfhvrwchbjq2clss6mivb8q07bcq369yw1b8"; depends=[Biostrings doParallel e1071 foreach ranger Rcpp rPref rstan]; broken = true; }; gpart = derive2 { name="gpart"; version="1.13.0"; sha256="1518wjkaw22ckgpwl6si83bhijvib0r0kgs9s4das41f0ygi92sd"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; broken = true; }; gprege = derive2 { name="gprege"; version="1.39.0"; sha256="12yjyb7a7jc86hdi3a3cavqxfzkhmds1m2vigzw5ihhx6028pa78"; depends=[]; broken = true; }; + hypeR = derive2 { name="hypeR"; version="1.14.0"; sha256="0vni4s1rvdjm4l5jaa2kq0i1z87jw09vd1pw63aa0v6qk1vr96vc"; depends=[dplyr ggforce ggplot2 htmltools httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable reshape2 rlang rmarkdown scales shiny stringr visNetwork]; broken = true; }; + imageHTS = derive2 { name="imageHTS"; version="1.48.0"; sha256="124pksw08b88bj7l8pckzvgk6sf54d633cnbq2r5il7a09i4caim"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; broken = true; }; inveRsion = derive2 { name="inveRsion"; version="1.43.0"; sha256="0h2q10xf4x22hy7780w4pvq488921wzjngly8qcc97sa8iacssk3"; depends=[haplo_stats]; broken = true; }; iteremoval = derive2 { name="iteremoval"; version="1.15.1"; sha256="0bwl8lzxvf5azwyacv9x16l4kyi8l00xny2s83gp2kng5gyz8602"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; broken = true; }; + lfa = derive2 { name="lfa"; version="1.28.2"; sha256="0z8aa2435f7v2l6zwv47v2a6p9hal156dsh8v1iri233d1qx7fax"; depends=[corpcor]; broken = true; }; + mAPKL = derive2 { name="mAPKL"; version="1.28.0"; sha256="0nj2r54djps19lar2sp6bhdi5nkid195xyaqzzam2r7piwr8xv8s"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; broken = true; }; + maanova = derive2 { name="maanova"; version="1.68.2"; sha256="1rcxvv0vcvksswjd3vry68nmvrbh05p5pica48bwcar93jh70bx9"; depends=[Biobase]; broken = true; }; + metaseqR2 = derive2 { name="metaseqR2"; version="1.10.0"; sha256="0m5dyg0gsvif02mgz0mcdk8annmqy4a6s5ldk3d9hjjzcgchpkpv"; depends=[ABSSeq baySeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn yaml zoo]; broken = true; }; + metavizr = derive2 { name="metavizr"; version="1.21.0"; sha256="1d88f854sn5m2pklsyvkmq05yzjanxlnkz5gpzban62qq1mpvims"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; broken = true; }; methyAnalysis = derive2 { name="methyAnalysis"; version="1.34.0"; sha256="05k3n7iy5ijidbnblbqqas8dsj8drwzbhyrbs8wl1ypkg51havi0"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; broken = true; }; + netbiov = derive2 { name="netbiov"; version="1.31.0"; sha256="0ldpbq8d7hq6sa5qcc5qh23plczg35170v3fifyz6a47vghr5ff9"; depends=[igraph]; broken = true; }; + netboxr = derive2 { name="netboxr"; version="1.9.0"; sha256="1brnm60745s2axls4p6qcxipjjr3ph9ijg1q604fgm42rf6i7qzm"; depends=[clusterProfiler data_table DT gplots igraph jsonlite plyr RColorBrewer]; broken = true; }; networkBMA = derive2 { name="networkBMA"; version="2.35.0"; sha256="0xa0b977apbr6p9kqk38582af635kp99csj32bsn2bf8pjsmd4d2"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; broken = true; }; + oneSENSE = derive2 { name="oneSENSE"; version="1.20.0"; sha256="1lzb8i3frv3va2q28glwnjwszrynhky5y8fx10q4h52p2wqgc4v3"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; broken = true; }; + pareg = derive2 { name="pareg"; version="1.2.0"; sha256="1b5ymhnznjx00vf4y09y2fw75czsd6g75bin4f6h33lpidl8z38x"; depends=[DOSE dplyr furrr ggplot2 ggraph glue igraph keras magrittr Matrix matrixLaplacian nloptr progress proxy purrr reticulate rlang shadowtext stringr tensorflow tfprobability tibble tidygraph tidyr]; broken = true; }; perturbatr = derive2 { name="perturbatr"; version="1.13.0"; sha256="0ssk8cr42hibn917s2z2nzcdan54c7xiydypbi8f3g4w68q4ly31"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; broken = true; }; + pkgDepTools = derive2 { name="pkgDepTools"; version="1.63.0"; sha256="10q0z1ps073py82zqii4sfdhnpvcyj4sx1yx3lzy5c41l8py6lag"; depends=[graph RBGL]; broken = true; }; + plethy = derive2 { name="plethy"; version="1.36.0"; sha256="09929w6rd84hvz6fiydd5v0php9gvbvxgvsnxvkzwyxfmmmx1dzr"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; broken = true; }; ppiStats = derive2 { name="ppiStats"; version="1.62.0"; sha256="0w5gkfah2y50x4wj5fn8i6ycx1x013mn9w4bs8r2vfqabpws1a81"; depends=[Biobase Category graph lattice RColorBrewer]; broken = true; }; predictionet = derive2 { name="predictionet"; version="1.40.0"; sha256="1f3ghlcfnls9mx2hbs923rdz7kn0wdhy2csp1y1286c5q5dybrgh"; depends=[catnet igraph MASS penalized RBGL]; broken = true; }; + proBatch = derive2 { name="proBatch"; version="1.14.0"; sha256="079dh61v1dmsasrh5sn6sn1rgi34mavxa1sc1y8x6wqjwabm4w1j"; depends=[Biobase corrplot data_table dplyr ggfortify ggplot2 lazyeval lubridate magrittr pheatmap preprocessCore purrr pvca RColorBrewer reshape2 rlang scales sva tibble tidyr viridis wesanderson WGCNA]; broken = true; }; + proFIA = derive2 { name="proFIA"; version="1.23.0"; sha256="0y08vj401f45dvgxjwjx94hvd0rk1wljk8n1irpkdafg24gv4fvj"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; broken = true; }; pulsedSilac = derive2 { name="pulsedSilac"; version="1.9.1"; sha256="1zb8xzs9h4rcrnmsfvrwb1qixn3jbnzxdwqgdrb82hgmxabmajlb"; depends=[cowplot ggplot2 ggridges MuMIn R_utils robustbase S4Vectors SummarizedExperiment UpSetR]; broken = true; }; + qrqc = derive2 { name="qrqc"; version="1.52.0"; sha256="0411477y7nazlwbz3pfszr1wfas6qd0g0iz0p9pmq16dw8pzkgg6"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rhtslib testthat xtable]; broken = true; }; + rama = derive2 { name="rama"; version="1.72.0"; sha256="0i6crxnzhwxnc55xh2rv36jfwh4bd30alw1f05ixdrxwqwsslbpy"; depends=[]; broken = true; }; + riboSeqR = derive2 { name="riboSeqR"; version="1.32.0"; sha256="0la8kmxxh5jnqsrmmvyhi313bjdbqkiq16hcxar6mgyjhxlsm610"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; broken = true; }; + scAlign = derive2 { name="scAlign"; version="1.12.0"; sha256="1mlhxwsfrmhysa5mcyx7vf2jn49snf41yb7xqmyi40wilj9h8qlb"; depends=[FNN ggplot2 irlba purrr Rtsne Seurat SingleCellExperiment tensorflow]; broken = true; }; scClassifR = derive2 { name="scClassifR"; version="1.2.0"; sha256="0p9l9q5ina0axrqvqn1y5wkfqi0nacxm3nm6ny34j53znv07b2zz"; depends=[ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; broken = true; }; + scMAGeCK = derive2 { name="scMAGeCK"; version="1.9.1"; sha256="1i6l8jxrd66aqk3m9212wsi8jqklvs0agsqrllvf9mrh16js4vby"; depends=[ggplot2 Seurat]; broken = true; }; + segmentSeq = derive2 { name="segmentSeq"; version="2.32.0"; sha256="059q1wr1sfpi7vh7lrkpfzjd8rz19ya837y7hack0i9icygwjmk3"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; broken = true; }; + sigPathway = derive2 { name="sigPathway"; version="1.66.2"; sha256="0k86hlz7zbbw7559bd2sl59pr441kihgwvg8nr75mj8d50n783sy"; depends=[]; broken = true; }; slinky = derive2 { name="slinky"; version="1.12.0"; sha256="05ywydvyz3jnzbhabhz1sd61hpy9nb22512zpbi48mv5wic1sv3v"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; broken = true; }; + sojourner = derive2 { name="sojourner"; version="1.11.0"; sha256="1s0iqzn65s9g4yymy059z122i9wvgkcb5718snzxhj7mkqjzwhhc"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang scales shiny shinyjs sp truncnorm]; broken = true; }; + srnadiff = derive2 { name="srnadiff"; version="1.18.2"; sha256="0myh4pk2jbyr5ih8vycgw0vplgvpyar0xwcgr785xnpfjp8vj078"; depends=[baySeq BiocManager BiocParallel BiocStyle DESeq2 devtools edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; broken = true; }; tofsims = derive2 { name="tofsims"; version="1.22.0"; sha256="0da4843wbcr821yp8z3z4vd81qpm2lblckgd01fm89lmwj393z65"; depends=[ALS alsace KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; broken = true; }; tspair = derive2 { name="tspair"; version="1.53.0"; sha256="04xxrm313mnknhc38vl1sx6hic2g1x1xaa5772qlc7ip957hz85k"; depends=[Biobase]; broken = true; }; } diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index 2a266e8548df9..ec6848c704ce6 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -18,12 +18,11 @@ in with self; { ABPS = derive2 { name="ABPS"; version="0.3"; sha256="0n3f66nmfi5v94il1mxy026mi84w01ph2aljk60vn3mrz8kwf2ll"; depends=[kernlab]; }; ABSurvTDC = derive2 { name="ABSurvTDC"; version="0.1.0"; sha256="1k0c60z0npgjaz1w3vhh21k6x1l8alkzmms1r89h2p874cqn7y6x"; depends=[readxl survival]; }; ACA = derive2 { name="ACA"; version="1.1"; sha256="1i3hm27nvnkvc39xlh0d1blq8q0q02czmvgi3cazmjx3jvxay0vq"; depends=[]; }; - ACDC = derive2 { name="ACDC"; version="1.0.0"; sha256="11nlg6pcmfa8pl1f5fxxcig1z1j74yizllh5y9rcdbdfzcasvnzn"; depends=[colorspace deSolve dplyr ggplot2 latex2exp magrittr patchwork tibble tidyr]; }; ACDm = derive2 { name="ACDm"; version="1.0.4.2"; sha256="00i33b76gqllyc6ywwwrgyjvxfspqb3jf52b9sjaazlfwgn5xyjf"; depends=[dplyr ggplot2 plyr Rsolnp zoo]; }; ACEP = derive2 { name="ACEP"; version="0.0.21"; sha256="1c3krdxfpdmpj8z3bwi6gqq621n1hvna593bhcmrzkyv2jkc0k7a"; depends=[httr]; }; ACEsearch = derive2 { name="ACEsearch"; version="1.0.0"; sha256="1ssq8avj20dk2mal0j5dvshf7qgk0as90sgl71cn91cq8lbiilpn"; depends=[httr testthat]; }; ACEsimFit = derive2 { name="ACEsimFit"; version="0.0.0.9"; sha256="0ifwgpnql14z1qzw8fmllgzl97bwd35f0558ymmcxz1mhgh6cb2v"; depends=[OpenMx]; }; - ACEt = derive2 { name="ACEt"; version="1.8.2"; sha256="0583c9dg2yf01zf5p0bf24zipkm8yp7rwhn1dxyw2d0v881bbli6"; depends=[BH MASS Rcpp RcppArmadillo]; }; + ACEt = derive2 { name="ACEt"; version="1.9.0"; sha256="1071d75sw5bcfw1acjsg6bn81sapb5hkwrxjfrfxlz5r83w6213f"; depends=[BH MASS Rcpp RcppArmadillo]; }; ACNE = derive2 { name="ACNE"; version="0.8.1"; sha256="0kzapsalzw6jsi990qicp4glijh5ddnfimsg5pidgbwxg4i05grl"; depends=[aroma_affymetrix aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; ACSWR = derive2 { name="ACSWR"; version="1.0"; sha256="195vjrkang5cl7gwsna0aq4p0h4jym9xg9yh94bnf8vq6wf8j83n"; depends=[MASS]; }; ACTCD = derive2 { name="ACTCD"; version="1.2-0"; sha256="0mzjxxr2zfdidw8ibh6w8mvpkw3q3nvngqi05g9ind26ckvk053p"; depends=[GDINA R_methodsS3]; }; @@ -57,8 +56,9 @@ in with self; { AHMbook = derive2 { name="AHMbook"; version="0.2.6"; sha256="055li8mj863icvcrp23wfsg7gf8zmi8zn0hck2yraygazv2xk97k"; depends=[coda fields mvtnorm plotrix raster sp spdep unmarked]; }; AHPWR = derive2 { name="AHPWR"; version="0.1.0"; sha256="1g7d1vbjxb232fk6wjah73kjm6pj81acls8wqssphgnfiffgrrq6"; depends=[dplyr formattable ggplot2 igraph magrittr readxl tibble tidyr xlsx]; }; AHPhybrid = derive2 { name="AHPhybrid"; version="0.1.0"; sha256="1hf2ba52nim13jwkq857vnmnnb1yhgdz6kipqg3mmqrgz7kg52v1"; depends=[]; }; + AHPtools = derive2 { name="AHPtools"; version="0.1.0"; sha256="07gh7xs1f3yg6x23h00llqmhy1zx7vwsrk0l3n2s8gd3hvqjm14x"; depends=[]; }; AHSurv = derive2 { name="AHSurv"; version="0.1.0"; sha256="051q6iamqhhkrq7bfhq40n9svd4wfqyxscgwfnsflqdmbgm6gghs"; depends=[flexsurv rootSolve]; }; - AICcPermanova = derive2 { name="AICcPermanova"; version="0.0.1"; sha256="1wi020y20chf27pqdm34l5w6fy4y0qb597hfn0fr84pdsqvc90yv"; depends=[broom car data_table doParallel dplyr foreach furrr future stringr tidyr vegan]; }; + AICcPermanova = derive2 { name="AICcPermanova"; version="0.0.2"; sha256="0sq3lnyrja2vpl5wqq517zw32fi96x99gqxj9lh8q3b0napkb0fd"; depends=[broom car data_table doParallel dplyr foreach furrr future stringr tidyr vegan]; }; AICcmodavg = derive2 { name="AICcmodavg"; version="2.3-2"; sha256="0lzk6xq6pfb7jxk61vlkcl60k4g9vqrdxdq19lc1ihjq13dmx7l9"; depends=[lattice MASS Matrix nlme survival unmarked VGAM xtable]; }; AID = derive2 { name="AID"; version="2.8"; sha256="10s2q6lcsh6k0b9n89cjwja3cng4wqzcl9grcbpba8xdz2jncn6s"; depends=[ggplot2 MASS meta nortest psych stringr tseries]; }; AIPW = derive2 { name="AIPW"; version="0.6.3.2"; sha256="1iqq665qigw9dmc62x2dz1nvrk8s65ph0a3k2p7mkznr9frshhi2"; depends=[future_apply ggplot2 progressr R6 Rsolnp SuperLearner]; }; @@ -70,7 +70,6 @@ in with self; { ALTopt = derive2 { name="ALTopt"; version="0.1.2"; sha256="1nbbvniramajg6k83xqgx7r0abjrfja8zz0y3g3j8qmvbcqmjx13"; depends=[cubature lattice]; }; ALUES = derive2 { name="ALUES"; version="0.2.1"; sha256="12fayxz0cb8wibccgz62gzrbkwzw2y4xljixrh02i1lbfwgsky14"; depends=[Rcpp]; }; ALassoSurvIC = derive2 { name="ALassoSurvIC"; version="0.1.1"; sha256="0asaip7mq1brahirm025d57gk1fgysbmhi6jypf2jihai7dl4jg2"; depends=[Rcpp]; }; - AMAPVox = derive2 { name="AMAPVox"; version="1.0.0"; sha256="0pdcsdfflgss9zrc1biiwg7lrvr10irmi2q8zng6yaccnlw4v074"; depends=[curl data_table dplyr jsonlite rappdirs stringr]; }; AMCP = derive2 { name="AMCP"; version="1.0.1"; sha256="14fbb2p4dbgi7i31xxavrldw4wnd4cjjh56ys63rivkswi1hhzj2"; depends=[]; }; AMCTestmakeR = derive2 { name="AMCTestmakeR"; version="1.0.0"; sha256="1vgncc61gmqhax2a7072jb36bzkycv80xqihkr5qs8jxnqqkndxd"; depends=[]; }; AMModels = derive2 { name="AMModels"; version="0.1.4"; sha256="18h075bzk8s75b3zmjd0x8c6dpl40445d4kv8n0p4ldnx80b1aha"; depends=[unmarked]; }; @@ -90,23 +89,23 @@ in with self; { APIS = derive2 { name="APIS"; version="1.0.1"; sha256="1af82mixamllly7v1jfvn1anpm1pafkv5mshwp6nmc27vaq201z5"; depends=[doParallel foreach ggplot2 gridExtra]; }; APML0 = derive2 { name="APML0"; version="0.10"; sha256="1l6mw1mqb7qnsvfv9w6yydqjsrwrsrqx3bpifyp43cf2q71yx5gp"; depends=[Matrix Rcpp RcppEigen]; }; APPEstimation = derive2 { name="APPEstimation"; version="0.1.1"; sha256="1bg9ma4i3k3xdgyk2h4f368gqnczvlhvjw4114iznmrv1wl4g25c"; depends=[densratio]; }; + APackOfTheClones = derive2 { name="APackOfTheClones"; version="0.1.2"; sha256="0fzai68yjspigapcw383bzm4kz6cvv2nnn877gbg3qaqvlzx3ysz"; depends=[data_table dplyr ggforce ggplot2 hash R6 rlang Seurat]; }; APfun = derive2 { name="APfun"; version="0.1.6"; sha256="0j54pcjzr5f8xhvp41vrl0i1hchphnij6p87j16rawp21apvnxyd"; depends=[maptools raster rgdal sp withr]; }; APtools = derive2 { name="APtools"; version="6.8.8"; sha256="171aydyd7s8qll7djl4ysy596wxdf5wfwpqwfi14jjglc9r9qrrr"; depends=[cmprsk survival]; }; AQEval = derive2 { name="AQEval"; version="0.5.2"; sha256="0iac6bcrbhiaxz05vmfmb99g1060r36z1qh3imbwri7m16v0gx59"; depends=[dplyr ggplot2 ggtext loa lubridate mgcv openair purrr segmented strucchange tidyr]; }; AQLSchemes = derive2 { name="AQLSchemes"; version="1.7-1"; sha256="10j8qh7m975666ipgdvzrjiraqqb5rn8qj4w76s3ijl83y0v5j3v"; depends=[]; }; - AQuadtree = derive2 { name="AQuadtree"; version="1.0.2"; sha256="1nq2k8dkviazh09pglgla7vgvxwgckkbwx20rs8q9k0xnmsz86yz"; depends=[dplyr sp]; }; + AQuadtree = derive2 { name="AQuadtree"; version="1.0.3"; sha256="1dlfa3jlac4dqad1yw1whcshf18adabwvjx2pxg0xnkpxs1n2rfm"; depends=[dplyr sp]; }; AR = derive2 { name="AR"; version="1.1"; sha256="1wn4g2997c4vc3mzq2pv8ld0ryp0i78v4zlqqryvhshxgnz4f2pr"; depends=[DISTRIB]; }; ARCensReg = derive2 { name="ARCensReg"; version="2.1"; sha256="05zjk1wxqfigzg80lvx1940a059jfdr9zbzgzmz2n01glj1lvj63"; depends=[msm mvtnorm numDeriv tmvtnorm]; }; ARCokrig = derive2 { name="ARCokrig"; version="0.1.2"; sha256="0pk0y0gsw681py0vwizxvh1jqjnapzqfr0mbdpli1sray55xbjr2"; depends=[ggplot2 mvtnorm Rcpp RcppArmadillo RcppEigen]; }; - ARDL = derive2 { name="ARDL"; version="0.2.2"; sha256="0g9vxizyiaafqvn2ji4vhl6zylfh1y227prfkc2pgznai0ifhqv3"; depends=[aod dplyr dynlm lmtest msm stringr zoo]; }; + ARDL = derive2 { name="ARDL"; version="0.2.3"; sha256="13w2dqfn2j186n7ycya7vn8vj3pay242m4gbcg7vjv0x8rm78jlk"; depends=[aod dplyr dynlm ggplot2 gridExtra lmtest msm stringr zoo]; }; ARHT = derive2 { name="ARHT"; version="0.1.0"; sha256="1fz81a202r8vk655dg6a03zfq3gfkimqjvmc95k3j02xz0iv58kn"; depends=[]; }; ARIMAANN = derive2 { name="ARIMAANN"; version="0.1.0"; sha256="0n4n9srl56s6pxjib43ksb9rahmsb509sfvpjk4py8m4r01ab2m2"; depends=[forecast tseries]; }; ARIbrain = derive2 { name="ARIbrain"; version="0.2"; sha256="18c7yxkrnqh18gcfzvdc5wqig6ywdmjcy8rlz0fdj3b8fb84dfpr"; depends=[hommel plyr RNifti]; }; AROC = derive2 { name="AROC"; version="1.0-4"; sha256="0wwv63mlh8pl5pzaih57l2qy70fz2wpfyxns1lyp95sxhq7ddwza"; depends=[Hmisc MASS Matrix moments nor1mix np spatstat_geom]; }; - ARPALData = derive2 { name="ARPALData"; version="1.3.0"; sha256="1c7885f7043inihk6mf98qdzkgr3nzrn3x9r6r62w4ri8j6mpr8y"; depends=[aweek data_table doParallel dplyr eurostat ggplot2 lubridate magrittr moments mondate purrr readr rlang RSocrata sf stringi stringr tibble tidyr tidyselect tm]; }; + ARPALData = derive2 { name="ARPALData"; version="1.3.1"; sha256="12bb5ghgwxvimh1frcq9cz6id15pj7zxz8mllwbda734c9y95x6g"; depends=[aweek data_table doParallel dplyr eurostat ggplot2 lubridate magrittr moments mondate purrr readr rlang RSocrata sf stringi stringr tibble tidyr tidyselect tm]; }; ARPobservation = derive2 { name="ARPobservation"; version="1.2.1"; sha256="1gpq5wl3mwp4hi49h1g6nnizzpnfc19pv8chdyhv8y5sraq1k2ag"; depends=[]; }; ART = derive2 { name="ART"; version="1.0"; sha256="186w1ivj5v3h906crl953qxgai5wiznaih83dgvwgnmabs9p1wvk"; depends=[car]; }; - ARTP2 = derive2 { name="ARTP2"; version="0.9.45"; sha256="12nqxry2jkl1n07rbms38mrnp39cn00d0h272d9f1z5x883flv62"; depends=[data_table Formula]; }; ARTofR = derive2 { name="ARTofR"; version="0.4.1"; sha256="1dw9aascnqr5cbk8a862rlma94b39ndgkrhf826qf4k58y92nf5q"; depends=[bannerCommenter clipr rstudioapi shiny]; }; ARTool = derive2 { name="ARTool"; version="0.11.1"; sha256="16awxcncyhry0ygk8gdvlff787837rr8qsyg1pxd11w4v1llrqrf"; depends=[car dplyr emmeans lme4 magrittr plyr]; }; ARpLMEC = derive2 { name="ARpLMEC"; version="2.4.1"; sha256="1d6gvgbnj19dislzjlxn7i0iq7h56zz7hm9x5l865ji790b9smqw"; depends=[expm LaplacesDemon MASS mnormt numDeriv relliptical TruncatedNormal]; }; @@ -125,7 +124,6 @@ in with self; { AUC = derive2 { name="AUC"; version="0.3.2"; sha256="07xf47kypqbsg2mixmq6mnh4s89aqan9bgl6kfv6lbx8ajv2asw3"; depends=[]; }; AUtests = derive2 { name="AUtests"; version="0.99"; sha256="0ima350mjlqvij6f9xy6wfcibvlji7nh0prpqngj7apn82ri4m2k"; depends=[logistf]; }; AWR = derive2 { name="AWR"; version="1.11.189-1"; sha256="1imvpmq6br0z7l67w66a5s1ylbv6xvypj0wc09bmjy7sapdmkn4x"; depends=[rJava]; }; - AWR_Athena = derive2 { name="AWR.Athena"; version="2.0.7-0"; sha256="1j9bqhyk0jzry4g379ml65gwxlszn7pjif1dywgns98jbry8mavh"; depends=[rJava RJDBC]; }; AWR_KMS = derive2 { name="AWR.KMS"; version="0.1"; sha256="00aqhyqlncsv0vfcyhaazxaclwm63v5kscssash7529avdwd4gqg"; depends=[AWR jsonlite rJava]; }; AWR_Kinesis = derive2 { name="AWR.Kinesis"; version="1.7.3"; sha256="1gfjzbb8xxfd2x5zabysqi0x10sb1c9826wqw8y555nsxgksqxz8"; depends=[AWR futile_logger jsonlite rJava]; }; AZIAD = derive2 { name="AZIAD"; version="0.0.2"; sha256="0w5s367zkf857hzs1lczjgnd8ydnam8k5fwf155drxxdr5c3gm2z"; depends=[corpcor doParallel dplyr EnvStats extraDistr foreach lqmm matrixcalc MixAll QRM rmutil rootSolve]; }; @@ -133,15 +131,16 @@ in with self; { Ac3net = derive2 { name="Ac3net"; version="1.2.2"; sha256="1ns4n0xxz6p34c11bj0k7nzgmyqr9mis2b0g5nfz37dbikndyqyz"; depends=[data_table]; }; AcademicThemes = derive2 { name="AcademicThemes"; version="0.0.1"; sha256="04c9hshsq1wq5v6005zhmnp2sgy06fxxxb7gnxpvvmslnq644sb2"; depends=[ggplot2]; }; AcceptanceSampling = derive2 { name="AcceptanceSampling"; version="1.0-8"; sha256="1ja1g0v8qvf7yj81x37wc6i7fkwpc573756jgvazazi8yf1gm12p"; depends=[]; }; + Achilles = derive2 { name="Achilles"; version="1.7.2"; sha256="1xkhplw7jpz7y86nac2z5vk2xs898kfv6apmk3rahjr0rmdijdqg"; depends=[data_table DatabaseConnector dplyr jsonlite lubridate ParallelLogger readr rlang SqlRender tseries]; }; AcousticNDLCodeR = derive2 { name="AcousticNDLCodeR"; version="1.0.2"; sha256="1fgzgwanpv2pzy74xdk3hamc44p8qch467wh163dxby8jr9ik0sb"; depends=[seewave tuneR zoo]; }; AcrossTic = derive2 { name="AcrossTic"; version="1.0-3"; sha256="03180h79jhjd66ibrnsfp3yyp2jlfysp7cymw46phzj2palghsc0"; depends=[lpSolve treeClust]; }; ActCR = derive2 { name="ActCR"; version="0.3.0"; sha256="1w3xkq3wanpa2j3rfzzdvad2r3vzzvp76kp56mh2s07p3xql6rv0"; depends=[cosinor cosinor2 dplyr minpack_lm zoo]; }; ActFrag = derive2 { name="ActFrag"; version="0.1.1"; sha256="08r3gwjz4fkyy85dxqix0ffm5xyq45032qv3snnzxnlqxslxbqn1"; depends=[accelerometry dplyr ineq survival tidyr]; }; - ActiSleep = derive2 { name="ActiSleep"; version="0.2.1"; sha256="0nkfddfv0g1bvsg6811lrmy0cx7knmi225snyp22bh9ly9fnlqp8"; depends=[accelerometry DBI dplyr lazyeval lubridate RSQLite stringr tibble]; }; ActiveDriver = derive2 { name="ActiveDriver"; version="1.0.0"; sha256="10c7ga48fwvpd5mc4dqiyw4kc2l0iz5qn4hg7xk15r1qmm5rsipa"; depends=[MASS]; }; ActiveDriverWGS = derive2 { name="ActiveDriverWGS"; version="1.2.0"; sha256="0xnplgwxd197a4d422bsxg753q158i12ils16awd1cw30wafdxkk"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; ActivePathways = derive2 { name="ActivePathways"; version="1.1.1"; sha256="1crq164vyqhdq5y3q09k3m5zljqrhcd5ak0jrc0xqvzf0pasml2m"; depends=[data_table ggplot2]; }; ActivityIndex = derive2 { name="ActivityIndex"; version="0.3.7"; sha256="1zj2b6x31a1kxl80rarmkrlm7ack4154mrkbqs3fpi48zpmjbgd5"; depends=[data_table matrixStats R_utils]; }; + ActuarialM = derive2 { name="ActuarialM"; version="0.1.0"; sha256="1545jmbbisw5fxk07xl86jw7sw4kysa2crjm57mq2qk4qg9hh5rb"; depends=[]; }; AcuityView = derive2 { name="AcuityView"; version="0.1"; sha256="0f0iclmnwdc8ixiiai4svk4x1g3pjy7dhm3cm58fv6ckx12d3d2l"; depends=[fftwtools imager plotrix]; }; AdMit = derive2 { name="AdMit"; version="2.1.9"; sha256="0dlmqpwqfhhc4z2xr44f00xsg0hbmw2c5z2d4pbifv36jlrdxbip"; depends=[mvtnorm]; }; AdaSampling = derive2 { name="AdaSampling"; version="1.3"; sha256="1c8dh8lxyb076317n4qk2g3qv5j4mc1dszbh3k1p2b0nxiprqk5i"; depends=[caret class e1071 MASS]; }; @@ -162,14 +161,14 @@ in with self; { AgroReg = derive2 { name="AgroReg"; version="1.2.9"; sha256="16w1ayzr95w8frca3c3mnqdwgja2r54a1ywkynw9x29cdv47icnx"; depends=[boot broom dplyr drc egg ggplot2 minpack_lm purrr rcompanion]; }; AgroTech = derive2 { name="AgroTech"; version="1.0.2"; sha256="0pfw0sps9fbzzyy4d803j9fbg6a23nj18rks0bnrj9hms7a3vwfs"; depends=[crayon ggplot2 ggrepel gridExtra lmtest nortest readxl xlsx]; }; AhoCorasickTrie = derive2 { name="AhoCorasickTrie"; version="0.1.2"; sha256="0zh3y5jd8m0xbj6lqr01zvwj9qd1xr3iq7vd6sgr3g3qh4kqm5pq"; depends=[Rcpp]; }; - AirMonitor = derive2 { name="AirMonitor"; version="0.3.9"; sha256="0n5pc0nazkn4g7lwl3nvfhx8nkyj1cfgnz2zfsv127waycd3p6m4"; depends=[dplyr dygraphs leaflet lubridate magrittr MazamaCoreUtils MazamaRollUtils MazamaTimeSeries readr rlang stringr tidyselect xts]; }; + AirMonitor = derive2 { name="AirMonitor"; version="0.3.11"; sha256="0wvgn5rq0qzzf58jga0y44b90hcp4adp9g3i5k7n15cnmq3llmhf"; depends=[dplyr dygraphs leaflet lubridate magrittr MazamaCoreUtils MazamaRollUtils MazamaTimeSeries readr rlang stringr tidyselect xts]; }; Ake = derive2 { name="Ake"; version="1.0.1"; sha256="0mdpx1dnk57yr0mpf9hqqdjx96j0sqdjdy964qvwmqbycvxxnp3z"; depends=[]; }; AlgDesign = derive2 { name="AlgDesign"; version="1.2.1"; sha256="01cx63wqr6yvgl5ml1lj6gh9p1sn42b6qcnsppcw7mvba9n652ar"; depends=[]; }; AlgebraicHaploPackage = derive2 { name="AlgebraicHaploPackage"; version="1.2"; sha256="1krm5cx609sv2p0g3xm5jaiqs9li06v717lw7ywjvx7myc9x4c07"; depends=[]; }; - AllMetrics = derive2 { name="AllMetrics"; version="0.1.0"; sha256="14fgs0khi7q8l07bpldqankx5inbggcnz88969vy90jy5f92zjx2"; depends=[]; }; + AllMetrics = derive2 { name="AllMetrics"; version="0.1.1"; sha256="1cxnw5af2wxghndsmgmpcpsdy7v38fwkidn3aiag9kp3ys99g62z"; depends=[]; }; AlleleRetain = derive2 { name="AlleleRetain"; version="2.0.2"; sha256="0b6h5giskqbjbrk8nf29i75wrhxsjw1c87laiqzrpbp9n717bl20"; depends=[]; }; AlleleShift = derive2 { name="AlleleShift"; version="1.1"; sha256="1cmmxwp3qq28hln6k9hfv61b53nwx08iidhcxj8bdwv7msyp9f8k"; depends=[adegenet BiodiversityR vegan]; }; - AllelicSeries = derive2 { name="AllelicSeries"; version="0.0.2.2"; sha256="0frklwxszjh6x746pk3sb013wm8vri88b9qn1iqy5xqmvmwix2vs"; depends=[Rcpp RcppArmadillo RNOmni SKAT]; }; + AllelicSeries = derive2 { name="AllelicSeries"; version="0.0.3.0"; sha256="1wh9nkq67n7ldipf7wl43j1w8w42izlimx3baxh1a3a07mahf2pz"; depends=[Rcpp RcppArmadillo RNOmni SKAT]; }; Allspice = derive2 { name="Allspice"; version="1.0.7"; sha256="1a5wxs2fbpfk3032h70z86zzrzjjkp00c06dh7g2jmqc5irp6n2a"; depends=[]; }; AlphaHull3D = derive2 { name="AlphaHull3D"; version="2.0.0"; sha256="1jp4m2yd9z8m4gz5hfa08qm02kalrzy6pbjf3rfcb0xjglk1lngr"; depends=[BH Rcpp RcppCGAL RcppEigen rgl Rvcg]; }; AlphaPart = derive2 { name="AlphaPart"; version="0.9.8"; sha256="1ih76v3kgnladqq3nvlqrz5sqkg1j97m778kchz6k05cjxhj8l4q"; depends=[directlabels dplyr ggplot2 magrittr pedigree Rcpp reshape tibble]; }; @@ -212,6 +211,7 @@ in with self; { ArchaeoChron = derive2 { name="ArchaeoChron"; version="0.1"; sha256="1qma2432mm73h72g9ah1k02wlcb6yrhc6mpai9nj7v58s126ffxn"; depends=[ArchaeoPhases Bchron coda rjags]; }; ArchaeoPhases = derive2 { name="ArchaeoPhases"; version="1.8"; sha256="00d8lpasz96l55v3982mqg85b237lxvsjl65p288yzj87860v2kj"; depends=[coda digest dplyr ggalt ggplot2 ggraph gplots gtools hdrcde magrittr readr reshape2 shiny toOrdinal]; }; ArchaeoPhases_dataset = derive2 { name="ArchaeoPhases.dataset"; version="0.2.0"; sha256="0yffzc9jmyiil3p0bvf0fpq64mn55swcnizi3bgsl44d4j93y68q"; depends=[]; }; + AriGaMyANNSVR = derive2 { name="AriGaMyANNSVR"; version="0.1.0"; sha256="1faqripvb6alfajz37zqm70p0c2f6yf9f2ca2bzrsizp0yh81719"; depends=[AllMetrics aTSA DescribeDF dplyr e1071 fGarch FinTS forecast neuralnet psych tseries]; }; Arothron = derive2 { name="Arothron"; version="2.0.5"; sha256="0clz01096fdkhnh89np3knhdnk78p2faj9zkm5qhg56jzaji8wxi"; depends=[abind alphashape3d compositions doParallel foreach geometry Morpho rgl Rvcg stringr vegan]; }; AsioHeaders = derive2 { name="AsioHeaders"; version="1.22.1-2"; sha256="192qxayrpvi02wrqq2h5cjc92aaxrsgw7z32r8qk5imqg3mc0a8n"; depends=[]; }; AssetAllocation = derive2 { name="AssetAllocation"; version="1.0.0"; sha256="02r9a21696y1gj5qw01jddnyda6hm962l1am7igrqyywh05canch"; depends=[NMOF PerformanceAnalytics quantmod riskParityPortfolio RiskPortfolios xts zoo]; }; @@ -281,7 +281,7 @@ in with self; { BCDAG = derive2 { name="BCDAG"; version="1.0.0"; sha256="1a4ylby1hm2pfdf22qvw1qpgs742y77kpvmymikx8pc1vnhmwjih"; depends=[gRbase lattice mvtnorm]; }; BCDating = derive2 { name="BCDating"; version="0.9.8"; sha256="1px9fimg3fqx8bfkzq6rl34xclc9gcjxqjvj5islpdy4f1ifwph3"; depends=[]; }; BCE = derive2 { name="BCE"; version="2.2.0"; sha256="13banjjk14rrmyd66iayywip9aznfsk8x3yk4pamlw87byf0z3vk"; depends=[FME limSolve Matrix]; }; - BCEA = derive2 { name="BCEA"; version="2.4.2"; sha256="1lvr07qdmh5gbpq9i8n9y6vl6m0q3nvgjj056hx3ax3fhkica4vr"; depends=[cli dplyr ggplot2 gridExtra MASS Matrix purrr Rdpack reshape2 rlang scales]; }; + BCEA = derive2 { name="BCEA"; version="2.4.3"; sha256="010kcqydbk20s1jkkhhjbg185psxxnxc5ch1fsakvgsnl5axd8x2"; depends=[cli dplyr ggplot2 gridExtra MASS Matrix purrr Rdpack reshape2 rlang scales]; }; BCEE = derive2 { name="BCEE"; version="1.3.1"; sha256="0ys7gbxjwk28ajxa4pa7wyfc97dwlmysbvpsza1wrf661hjrdn6z"; depends=[BMA boot leaps Rcpp RcppArmadillo]; }; BCHM = derive2 { name="BCHM"; version="1.00"; sha256="1nyf65grcyf74sixixzl12gylk2rzh7n5id4mbhim4lzdm4j272i"; depends=[cluster coda crayon knitr plyr rjags]; }; BCRA = derive2 { name="BCRA"; version="2.1.2"; sha256="17h0ara1y3fh2xyhjarbw3b549v6kq108bg946ndh7kjykara9dd"; depends=[]; }; @@ -304,9 +304,10 @@ in with self; { BESTree = derive2 { name="BESTree"; version="0.5.2"; sha256="0yij6xdlvhbqifckaylgbhszwwp38d9x6vbpr1nl40mwwnv4bswz"; depends=[plyr]; }; BETS = derive2 { name="BETS"; version="0.4.9"; sha256="0daixk7mqmk2jq35i7mjaslz11gxbnnjgwxfvj8x1s88vz9l74sm"; depends=[DBI digest dplyr DT dygraphs forecast foreign ggplot2 grnn htmltools httr lubridate miniUI plotly rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny sqldf stringr urca webshot xml2 zoo]; }; BFF = derive2 { name="BFF"; version="1.0.0"; sha256="1kbji9fh7d0ww5klwvlxgljflidkh2rywgb8xwj5j1j0y21lipfx"; depends=[BSDA]; }; - BFS = derive2 { name="BFS"; version="0.4.6"; sha256="1722wfa03pcbssyq38w0phjyzvrg0vk2x0qmplb71pg4qqa9hkvs"; depends=[janitor jsonlite magrittr pxweb rvest tibble tidyRSS xml2]; }; + BFS = derive2 { name="BFS"; version="0.4.7"; sha256="0782k3jvalpcp2amxyqy8n2z5011cy4srgvb1qcj9pi6ip33q76d"; depends=[janitor jsonlite magrittr pxweb rvest tibble tidyRSS xml2]; }; BFpack = derive2 { name="BFpack"; version="1.0.0"; sha256="1z5j6gd8zv39advb4xmpcbixbg8n516h0gpqkblb8dnb4mbh6d1s"; depends=[bain extraDistr lme4 MASS Matrix mvtnorm pracma]; }; BGData = derive2 { name="BGData"; version="2.4.1"; sha256="1bx63spfmsn9hz3qxhkvipfvyqcdy4afqzcada3bgly265kdg10h"; depends=[BEDMatrix bigmemory bit crochet ff LinkedMatrix symDMatrix synchronicity]; }; + BGFD = derive2 { name="BGFD"; version="0.1"; sha256="0983v66bjp9v3jp7zbjyffda1gaf20nakqr94c32lvh9wmk0y1s9"; depends=[AdequacyModel]; }; BGGE = derive2 { name="BGGE"; version="0.6.5"; sha256="1h76c40y45xhf2vp9g0q5j9lfwh16q9axbk5c9aqn4md008xr1j2"; depends=[]; }; BGGM = derive2 { name="BGGM"; version="2.0.4"; sha256="0676viahmid0n89jhs93ci8l7rxpam7rn75mdbshgx7f1q3wqiih"; depends=[BFpack GGally ggplot2 ggridges MASS mvnfast network Rcpp RcppArmadillo RcppDist RcppProgress Rdpack reshape sna]; }; BGLR = derive2 { name="BGLR"; version="1.1.0"; sha256="19qy8llmagrsm28nb80d029wkvqpv6r12f390zlhid0y8s5bpicp"; depends=[MASS truncnorm]; }; @@ -320,6 +321,7 @@ in with self; { BHTSpack = derive2 { name="BHTSpack"; version="0.6"; sha256="01y3ly83i70lkg2kgbw1r7r1g4k9rk41qyzzscbp8zgc9z63ll8z"; depends=[R2HTML xtable]; }; BI = derive2 { name="BI"; version="1.2.0"; sha256="12x8l5v703b142cixnw9fz0i1j7sx6cphjcsw7ywvhrfy7z8yc35"; depends=[]; }; BICORN = derive2 { name="BICORN"; version="0.1.0"; sha256="0mqk8vgp6jdk7f0paa06yqlibkd1y3vs69pg7i9mkvxmda7p4nkq"; depends=[]; }; + BIDistances = derive2 { name="BIDistances"; version="0.0.2"; sha256="1ajwa7ib0m3krhizi905rzkdqm9fhcypm58yqn4c6hnq4kpc9fm1"; depends=[parallelDist]; }; BIEN = derive2 { name="BIEN"; version="1.2.6"; sha256="17zrj5ckxaz4mdbgywxi8kf51ssbf2md1d2azf30dh96kzc2ayps"; depends=[ape DBI doParallel fasterize foreach raster RPostgreSQL sf terra]; }; BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="3.4-15"; sha256="0dm2yq2mmpiksmd1r248dv64sn72gazlsrjjwb0bsblivk69s21j"; depends=[miceadds Rcpp RcppArmadillo]; }; BIGDAWG = derive2 { name="BIGDAWG"; version="3.0.3"; sha256="1zbikvhyaksbddv2kz8nqkidjy4qsfp6a8wwyxjy5a0wcnqnwsxf"; depends=[haplo_stats httr XML]; }; @@ -340,7 +342,7 @@ in with self; { BLRShiny2 = derive2 { name="BLRShiny2"; version="0.1.0"; sha256="0cl959hlchba4ikzdvxv2jz30sswh5hc0d8hwx8ckzz52kkj4csa"; depends=[caret dplyr e1071 ggplot2 rhandsontable rmarkdown shiny]; }; BLSM = derive2 { name="BLSM"; version="0.1.0"; sha256="02xidwp91rh34rcqd0q552wzm2j80axs1nnwwv2aj04g96lf7myj"; depends=[Rcpp RcppEigen]; }; BMA = derive2 { name="BMA"; version="3.18.17"; sha256="1xfsfyjwsk5bp2j50qfhfm1yla4fl2l53d85466a9y3rl57m333d"; depends=[inline leaps robustbase rrcov survival]; }; - BMAmevt = derive2 { name="BMAmevt"; version="1.0.4"; sha256="10241cibzmgrmxzjw7fpw64qkayc1wig5xilahyc182841k4if6w"; depends=[coda]; }; + BMAmevt = derive2 { name="BMAmevt"; version="1.0.5"; sha256="19mmrz54n8ai9sfjpb3815p4r2pzy0v18hk020vqkjxakh9zgpab"; depends=[coda]; }; BMRBr = derive2 { name="BMRBr"; version="0.2.0"; sha256="0v2ysap5jfkq9fc5blqlfhsv2bs8rqybmp5z4q3g6y3y7qzhypjw"; depends=[rvest xml2]; }; BMRMM = derive2 { name="BMRMM"; version="0.0.3"; sha256="0izfvy8c3js4dkml0byfmgwfbcy3h9jabhj6hjn8an7095pj1vny"; depends=[fields gsubfn logOfGamma MCMCpack mhsmm multicool pracma]; }; BMRSr = derive2 { name="BMRSr"; version="1.0.3"; sha256="0snb8xs22f1khnywkgrs8pj7w6hg2mfppng0q695xyh4ci157wam"; depends=[dplyr httr purrr readr rlang stringr tibble xml2]; }; @@ -354,7 +356,7 @@ in with self; { BNPdensity = derive2 { name="BNPdensity"; version="2023.3.8"; sha256="0b0hv634k5vnc74iw2c0arx9rl3bh5hahhrhp14gx324jv279fs5"; depends=[coda dplyr ggplot2 gridExtra survival tidyr viridis]; }; BNPmix = derive2 { name="BNPmix"; version="1.0.2"; sha256="114gn80b7yyl6hi5cdnc0rp2hzy7pp8z6q4is1h29yxlqa6acbq4"; depends=[coda ggplot2 ggpubr Rcpp RcppArmadillo RcppDist]; }; BNSL = derive2 { name="BNSL"; version="0.1.4"; sha256="0nrlx55364kgvkdpyaimgjxwnzmmdl1gmvyv3wkm8n2jyki92xxp"; depends=[bnlearn igraph Rcpp]; }; - BNSP = derive2 { name="BNSP"; version="2.2.2"; sha256="0l2d1r601j2y3ksmlwiilk59l6zcip1bf8r4b56qxvfqmx4imkcn"; depends=[coda corrplot cubature Formula ggplot2 gridExtra label_switching mgcv plot3D plyr threejs]; }; + BNSP = derive2 { name="BNSP"; version="2.2.3"; sha256="01rrqvgz9655psm7xcysf50y94lkzl2q3davgjzymg73kzbv3s41"; depends=[coda corrplot cubature Formula ggplot2 gridExtra label_switching mgcv plot3D plyr threejs]; }; BNrich = derive2 { name="BNrich"; version="0.1.1"; sha256="0m3cz7npc7mwq2vj68hllbd2vf5xqw00jaxv1pm3c28mq7pb459j"; depends=[bnlearn corpcor glmnet graph]; }; BOIN = derive2 { name="BOIN"; version="2.7.2"; sha256="03h6s1nn87xgkk830wls06mgflg0arq084k74gfp1k4wccwkjr5y"; depends=[Iso]; }; BOJ = derive2 { name="BOJ"; version="0.3"; sha256="1x9lz01fjdk0aybs6zsbbq2xfjvh99qiimmnrkbcd6sj880vn3a3"; depends=[dplyr readr rvest tidyr tidyselect xml2]; }; @@ -364,11 +366,13 @@ in with self; { BRACE = derive2 { name="BRACE"; version="0.1.0"; sha256="19paaxk0szd5azcw95sd22fryb38lamd8r4y1f6zmcngbza470dk"; depends=[survival survminer]; }; BRACoD_R = derive2 { name="BRACoD.R"; version="0.0.2.0"; sha256="1jxxrgq2s5fqflp9ac4fx51jhlx33pdwijsp4vq63y430k79vcpp"; depends=[reticulate]; }; BRDT = derive2 { name="BRDT"; version="0.1.0"; sha256="1yv2fh4cc9h35l8cngpxnqa83a7bx79pr7c1gp9h84p1pigg8282"; depends=[]; }; + BREADR = derive2 { name="BREADR"; version="1.0.1"; sha256="1bvi3zvsqrin3jl2dwvrw18k9bbrhzcjhnr18sz9pmbgkfkjs4wk"; depends=[data_table dplyr forcats ggplot2 ggpubr magrittr matrixStats purrr readr stringr tibble]; }; BRETIGEA = derive2 { name="BRETIGEA"; version="1.0.3"; sha256="0q4phggz6smzd294znr1fp0gskpcwdbd6hnvvl3q3z1h7cpf40sn"; depends=[]; }; BRINDA = derive2 { name="BRINDA"; version="0.1.5"; sha256="0jxw3jxxp5k3q80pyiwlg4s5z5vbaplvf5bqb092hppgvkk2q2r5"; depends=[berryFunctions data_table dplyr Hmisc rlang]; }; BRISC = derive2 { name="BRISC"; version="1.0.5"; sha256="06ppm03clgnsqj6r9qq6fmz609sbigz35iw1qp1lijc4yvwlpr49"; depends=[matrixStats pbapply RANN rdist]; }; BRL = derive2 { name="BRL"; version="0.1.0"; sha256="13qi78v3057qn4hfby14sp26hy3ibl50f06x8gpak6gi76g8bhwi"; depends=[]; }; - BRugs = derive2 { name="BRugs"; version="0.9-1"; sha256="1m3dlw6201bzf6fcm4qscpsmgjkpidwiil3m4iwfn0b0iv3dclcv"; depends=[coda]; }; + BRVM = derive2 { name="BRVM"; version="5.0.0"; sha256="14bbl0b383ilj8zw8qw40gfyi6lpr0vqsb7hajzjycy5l0xnimjb"; depends=[dplyr fBasics formattable goftest gsheet highcharter httr httr2 lubridate magrittr nortest rlang rvest stringr tibble tidyr timeDate tseries xml2 xts]; }; + BRugs = derive2 { name="BRugs"; version="0.9-2"; sha256="19gyh6lambhwi7bx7hqa9nqp2xzjryi84npvd9m9mr3bzbv8mgz2"; depends=[coda]; }; BSBT = derive2 { name="BSBT"; version="1.2.1"; sha256="0ibqg3jr7l25aikz09s8v5w1z541dsw8pr30ixf6d1bly5bw5ahy"; depends=[expm igraph MASS]; }; BSDA = derive2 { name="BSDA"; version="1.2.1"; sha256="0vcf3h1rkgs0mr6rri2zjkb3c62dmndm281zh4ddz2vyw27wpwg2"; depends=[e1071 lattice]; }; BSGW = derive2 { name="BSGW"; version="0.9.4"; sha256="05gr0p9fmj5560s083iss8j4gyh5rk0kdi3qhq5dzr9mfzy0n12q"; depends=[doParallel foreach MfUSampler survival]; }; @@ -396,7 +400,6 @@ in with self; { BWGS = derive2 { name="BWGS"; version="0.2.1"; sha256="1473lvkmpf2dsgnccwl5a8wp9yvddciqdql4naba4lwghimxy39w"; depends=[BGLR brnn e1071 glmnet randomForest rrBLUP stringi]; }; BWStest = derive2 { name="BWStest"; version="0.2.2"; sha256="02amzlfprmw5pyis0dg0kg0x8xqh50a4vfdcxxmklrzik3b1vzzs"; depends=[memoise Rcpp]; }; BaM = derive2 { name="BaM"; version="1.0.3"; sha256="1mfbz8hp6cd170d5y6iva2dbd31rlg6z2dgnfvjp9myqa4cjy40y"; depends=[MASS mice]; }; - BaSTA = derive2 { name="BaSTA"; version="1.9.5"; sha256="09wvfg44g9j3gq9arkm2ajm8l4y7gna4fh49ihvmjzqdvsl6gkq6"; depends=[snowfall]; }; BaSkePro = derive2 { name="BaSkePro"; version="0.1.0"; sha256="06wnl128anr0isq07qn2xr426c8iybmrbixz93hxx1pshcm64f37"; depends=[MASS]; }; BalanceCheck = derive2 { name="BalanceCheck"; version="0.2"; sha256="0aal641vfbjk3w6ipwbqqmm9nnxs962hjmpph9wnqaqk5r6s7brs"; depends=[ade4 mvtnorm]; }; BalancedSampling = derive2 { name="BalancedSampling"; version="1.6.3"; sha256="0sarc0xmlg7w4j125i1igbwrqdwfxxb5jcdl44b70q672y6z30vr"; depends=[Rcpp SamplingBigData]; }; @@ -408,11 +411,13 @@ in with self; { BartMixVs = derive2 { name="BartMixVs"; version="1.0.0"; sha256="0i7h6srzlmbjwyqgfwkq1azxai5hxicfkdxyxs9nzng3zi2ls6i2"; depends=[loo mvtnorm nlme nnet Rcpp]; }; Barycenter = derive2 { name="Barycenter"; version="1.3.1"; sha256="0yhc0wwjqms569gnm8z2l9hgcbw8lyy437ynkij47pa4c1a1qvjy"; depends=[Rcpp RcppArmadillo]; }; BaseSet = derive2 { name="BaseSet"; version="0.0.17"; sha256="1v5f8ixcnqngrhsfrydl7y48gmvmb5srs4xygydv4g4vpmd8gh0c"; depends=[dplyr magrittr rlang]; }; + BaseTempSeed = derive2 { name="BaseTempSeed"; version="0.1.0"; sha256="07b1611k639whrc32xcjdlqyxjsdyd9gmpgx3f7b8hcchnhx98ay"; depends=[NlcOptim]; }; BasketballAnalyzeR = derive2 { name="BasketballAnalyzeR"; version="0.5.0"; sha256="1bad287llg89smqg43lgz2hdkjg3l39mh4k82avgb52xwqp5gjxc"; depends=[circlize corrplot dendextend directlabels dplyr GGally ggnetwork ggplot2 ggplotify ggrepel gridExtra hexbin magrittr MASS network operators PBSmapping plyr readr rlang scales sna sp statnet_common stringr tidyr]; }; BatchExperiments = derive2 { name="BatchExperiments"; version="1.4.3"; sha256="0g3vr2g4v968rwzja1nngji58960p2r494km8wia7x5w3y69p063"; depends=[backports BatchJobs BBmisc checkmate data_table DBI RSQLite]; }; BatchGetSymbols = derive2 { name="BatchGetSymbols"; version="2.6.4"; sha256="1sv4p0f8l79wy3q6jwsi3iy7zljc33z9mnyf8ijb23l64w7fvy9i"; depends=[cli crayon curl dplyr furrr future lifecycle lubridate purrr quantmod rvest scales stringr tibble tidyr XML zoo]; }; BatchJobs = derive2 { name="BatchJobs"; version="1.9"; sha256="0xsw25j2ks9bqgz189qdcyj8hzz93snknlik83nj04s6vy0w7aax"; depends=[backports BBmisc brew checkmate data_table DBI digest RSQLite sendmailR stringi]; }; - BayLum = derive2 { name="BayLum"; version="0.2.1"; sha256="0h0x18al2rqs6wjf4jayc1qv8lkn7rvkbjmr5h1gcggn2c4byyjn"; depends=[ArchaeoPhases coda hexbin KernSmooth Luminescence rjags runjags]; }; + BayLum = derive2 { name="BayLum"; version="0.3.1"; sha256="1n40zz0156kw6fwqvlhx3svmvwa2049z4ly9lxcid84dwyxxyn0r"; depends=[ArchaeoPhases coda hexbin KernSmooth Luminescence rjags runjags]; }; + Bayenet = derive2 { name="Bayenet"; version="0.1"; sha256="1xcn6cyzsy1am6d6kmb2fd5pn1h26hz68jj2kwy99f9bz4473rgy"; depends=[gsl hbmem MASS MCMCpack Rcpp RcppArmadillo SuppDists VGAM]; }; BayesARIMAX = derive2 { name="BayesARIMAX"; version="0.1.1"; sha256="1rcfq0r8sqiqs65mbpcr8i4667cdb50k6bx6wdh9spr0djh8gfv0"; depends=[coda forecast]; }; BayesBEKK = derive2 { name="BayesBEKK"; version="0.1.1"; sha256="1vlljv7xdfvbrbxqdi91xrz1aga04aa1pb23kvnmahm2s261map1"; depends=[coda MTS mvtnorm]; }; BayesBP = derive2 { name="BayesBP"; version="1.1"; sha256="043msccrins1smaizmf7qc6q1cyjdzirw2ygnvi56lskib1cls7m"; depends=[iterators openxlsx]; }; @@ -442,18 +447,20 @@ in with self; { BayesMallows = derive2 { name="BayesMallows"; version="1.3.0"; sha256="1mv1n2v9yvb8vzgld2dahv5v91843n81af5gbalhpg86yblizzfq"; depends=[cowplot ggplot2 HDInterval igraph Rcpp RcppArmadillo Rdpack relations rlang sets testthat]; }; BayesMassBal = derive2 { name="BayesMassBal"; version="1.1.0"; sha256="1cgcx8kvn0bmn8kmq8ri3k98yx085d2qndislbwhn833ws6vkl88"; depends=[coda HDInterval LaplacesDemon Matrix pracma Rdpack tmvtnorm]; }; BayesMixSurv = derive2 { name="BayesMixSurv"; version="0.9.1"; sha256="19kf39881q00pap9afwvvggk4s4w3qpz17b7065nig1mvk8dnp8r"; depends=[survival]; }; + BayesMortalityPlus = derive2 { name="BayesMortalityPlus"; version="0.1.0"; sha256="0kk6lmvp162jxx22r87hxl2i089ghkksy1fw923fcd3iyi52x2r0"; depends=[dplyr ggplot2 magrittr MASS progress scales tidyr]; }; BayesMultMeta = derive2 { name="BayesMultMeta"; version="0.1.1"; sha256="09x41r5lhr2dq56b05f0aj8v4s7084d4z90qjqwdkv8zgk664ki0"; depends=[assertthat Rdpack]; }; - BayesMultiMode = derive2 { name="BayesMultiMode"; version="0.1.1"; sha256="0kjv9snqnpamb0ph6qdimn1zdyp961yfi98xmbdy5dcqd5jcy3jg"; depends=[dplyr ggh4x ggplot2 ggpubr gtools magrittr Rdpack stringr tidyr]; }; + BayesMultiMode = derive2 { name="BayesMultiMode"; version="0.5.1"; sha256="1krjgij4drm9sc8rhcpb8vc94bmls40xyrjk329n2w4k5qq68za4"; depends=[assertthat bayesplot dplyr ggplot2 ggpubr gtools magrittr MCMCglmm mvtnorm posterior Rdpack scales sn stringr tidyr]; }; BayesNSGP = derive2 { name="BayesNSGP"; version="0.1.2"; sha256="0va4gvyfwfdk3yvhdyxc49qlmzxfblwlmwqh79b93zkv8239kkk1"; depends=[FNN Matrix nimble StatMatch]; }; BayesNetBP = derive2 { name="BayesNetBP"; version="1.6.1"; sha256="1c6a82qlcrpbb2c4zp3gk24wcgw6x62lm8hm6n2l1r307dxm2rpb"; depends=[bnlearn doBy fields graph igraph RColorBrewer]; }; BayesOrdDesign = derive2 { name="BayesOrdDesign"; version="0.1.2"; sha256="1417zd1n5sip999n6q6bgs85c0000ksl73a4p94y0lmdn27i8pmj"; depends=[coda ggplot2 gsDesign madness ordinal R2jags rjags rjmcmc schoolmath superdiag]; }; - BayesPPD = derive2 { name="BayesPPD"; version="1.1.0"; sha256="0nyzkg2lcvfk61xmxv7fjz626ik5bf9dbxfh6zyvjd9kjzw9kgdl"; depends=[Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; + BayesPPD = derive2 { name="BayesPPD"; version="1.1.1"; sha256="1rkbcz5kx8pxsm1q6rryyyc4j1dn049hysdj3piwk71jpl43b0jj"; depends=[Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; BayesPieceHazSelect = derive2 { name="BayesPieceHazSelect"; version="1.1.0"; sha256="0znbmv7crqycdx75jh02h6z8d6cifjszbrldv2yva4mkjxsydag5"; depends=[mvtnorm]; }; BayesPiecewiseICAR = derive2 { name="BayesPiecewiseICAR"; version="0.2.1"; sha256="1qrmw7zmygdzz84p76hyh2d8dx88b8xhbbd7radqm39g35zq5wz6"; depends=[mvtnorm]; }; BayesPostEst = derive2 { name="BayesPostEst"; version="0.3.2"; sha256="0r05by4w80j6hb22v3ibj686ixxbj7lkxq499fciz5lqs4lxzf3h"; depends=[brms carData caTools coda dplyr ggplot2 ggridges HDInterval MCMCpack R2jags R2WinBUGS reshape2 rjags rlang ROCR rstanarm runjags texreg tidyr]; }; BayesProject = derive2 { name="BayesProject"; version="1.0"; sha256="0b1xqw7f9kfbmr8m6fl9d2fpwr364s4a5vdw57l6i5rm6lszyfh5"; depends=[Rcpp RcppEigen Rdpack]; }; BayesRGMM = derive2 { name="BayesRGMM"; version="2.2"; sha256="0yvjl5kzmh2c7c00jk38cs5g6g0yhrc86p5jn8zf10349md3dpcv"; depends=[abind batchmeans MASS msm mvtnorm plyr Rcpp RcppArmadillo RcppDist Rdpack reshape]; }; BayesRS = derive2 { name="BayesRS"; version="0.1.3"; sha256="0fhvnckabp0z1cdsbjgv3ijnzaxwhrk83fwcflgqbhvm3a9lzr77"; depends=[coda ggplot2 metRology reshape rjags]; }; + BayesRepDesign = derive2 { name="BayesRepDesign"; version="0.42"; sha256="0xm3ap8lwg52760kyfp71i52mpkkh32753fprb4dfy1ry7g2qmyv"; depends=[lamW]; }; BayesReversePLLH = derive2 { name="BayesReversePLLH"; version="1.5"; sha256="08zx8paaqg8zkf4d2rfparbi54p1i9wr05iqp7nqy7xv3isq1zfp"; depends=[Rcpp RcppArmadillo]; }; BayesS5 = derive2 { name="BayesS5"; version="1.41"; sha256="0vs6s50h4gpxda9lbxfgn76k9kp81l62a6bv22r7ixsjlnd4baql"; depends=[abind Matrix snowfall splines2]; }; BayesSAE = derive2 { name="BayesSAE"; version="1.0-2"; sha256="1xbx9hr254agpcqs1fl7qi7h19fd2bbmjszn44l566n2svgvxwf5"; depends=[coda Formula lattice]; }; @@ -474,7 +481,7 @@ in with self; { BayesianLaterality = derive2 { name="BayesianLaterality"; version="0.1.1"; sha256="1b8ndwnwsj2wzbjp3rivdsx5nsfg2rgv6mnlyp7jxaksxvf4ray7"; depends=[dplyr purrr Rdpack rlang tidyr tmvtnorm]; }; BayesianMediationA = derive2 { name="BayesianMediationA"; version="1.0.1"; sha256="1ygc0xhk7mk7pkqn0v9n23j1m75rr1r2ar30r386c1av3jh7krnw"; depends=[car gplots lattice R2jags survival]; }; BayesianNetwork = derive2 { name="BayesianNetwork"; version="0.1.5"; sha256="0vnnxzxz68dkfwr9wif8lam3a4khgbslbf49xkygqm8n1swysx2x"; depends=[bnlearn heatmaply lattice networkD3 plotly rintrojs shiny shinyAce shinydashboard shinytest shinyWidgets testthat]; }; - BayesianPlatformDesignTimeTrend = derive2 { name="BayesianPlatformDesignTimeTrend"; version="1.0.0"; sha256="0ygqzjyrd6jaqyb7agyhy1xy4d4ngv6dri4cis6v4bfml2ix2jv8"; depends=[BH BiocManager boot doParallel foreach ggplot2 iterators matrixStats Rcpp RcppEigen RcppParallel reshape rstan rstantools StanHeaders stringr]; }; + BayesianPlatformDesignTimeTrend = derive2 { name="BayesianPlatformDesignTimeTrend"; version="1.1.0"; sha256="0drgv3pcbzy57f6qx52ysa4rgq45wvmgir9g5n9vvl9pjm2kb7m3"; depends=[BH BiocManager boot doParallel foreach ggplot2 iterators laGP lhs matrixStats Rcpp RcppEigen RcppParallel reshape rstan rstantools StanHeaders stringr]; }; BayesianPower = derive2 { name="BayesianPower"; version="0.2.3"; sha256="00rn3wmqrhk2pssbq5j2prl8m6cgfarr49672pnksp2dcbi47p20"; depends=[]; }; BayesianReasoning = derive2 { name="BayesianReasoning"; version="0.4.1"; sha256="0j8fzn6xza3vg7qbfxwhjncll9yx985660dr75y9qhhz84jis3dv"; depends=[dplyr ggforce ggplot2 magrittr reshape2 tibble tidyr]; }; BayesianTools = derive2 { name="BayesianTools"; version="0.1.8"; sha256="1ldx75g4ws2yrnq4xyj3j83xjhakhgbhn174lwqzviqynvbbshzm"; depends=[bridgesampling coda DHARMa ellipse emulator gap IDPmisc MASS Matrix msm mvtnorm numDeriv Rcpp tmvtnorm]; }; @@ -485,10 +492,11 @@ in with self; { Bchron = derive2 { name="Bchron"; version="4.7.6"; sha256="1s8bx9a5rpcrw0msnjf565crz3d2fykvy5fj1chbqxzjh7qm865w"; depends=[checkmate coda dplyr ggforce ggplot2 ggridges magrittr MASS mclust purrr scales stringr]; }; BeSS = derive2 { name="BeSS"; version="2.0.3"; sha256="09zxpzcaj13fn38cwd0xk0254aphb3jn1wdwn9hiq9vapfsgn0dx"; depends=[glmnet Matrix Rcpp RcppEigen survival]; }; BeastJar = derive2 { name="BeastJar"; version="1.10.6"; sha256="0581q9m7lb681d12vld231vn6wqv5s2sqkvav4fd0xllvjighlx7"; depends=[rJava]; }; - BeeGUTS = derive2 { name="BeeGUTS"; version="1.0.0"; sha256="0b0r8srh68m2kxdyvfx5kxrpchish5la7h44wkxfa59gcbsg96rc"; depends=[BH cowplot data_table dplyr ggplot2 gridExtra magrittr odeGUTS Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tidyr]; }; + BeeGUTS = derive2 { name="BeeGUTS"; version="1.1.2"; sha256="059xa5rpnd92kmy8hd26ryx3gkls9vlwbwwbwl4my1z7vll5s59m"; depends=[BH cowplot data_table dplyr ggplot2 gridExtra magrittr odeGUTS Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tidyr]; }; Benchmarking = derive2 { name="Benchmarking"; version="0.31"; sha256="0gg4yay098ga08ns5ybn7s467prwbq0a94a0nfah30jy36ggdfs2"; depends=[lpSolveAPI quadprog Rcpp ucminf]; }; BenfordTests = derive2 { name="BenfordTests"; version="1.2.0"; sha256="1nnj0w0zwcmg7maqmmpixx7alvsyxva370ssc26ahg6kxy5a621w"; depends=[]; }; Bergm = derive2 { name="Bergm"; version="5.0.5"; sha256="0plidwnyh38hrkbd3ild476f54bz6i70r0h3chxh3wp35rl04ikl"; depends=[coda ergm Matrix matrixcalc MCMCpack mvtnorm network Rglpk statnet_common]; }; + Bernadette = derive2 { name="Bernadette"; version="1.1.2"; sha256="0x7qh1b94ca8wzgdhf6knmh5lcmkn7xhch5gs492bhp5046fn3ds"; depends=[BH ggplot2 gridExtra magrittr Rcpp RcppEigen RcppParallel rstan rstantools scales StanHeaders]; }; Bessel = derive2 { name="Bessel"; version="0.6-0"; sha256="0iwm08nhlivi4zwcqdi296a1l4n4lfanfxhaysh9vcsyk1kpiacf"; depends=[Rmpfr]; }; Bestie = derive2 { name="Bestie"; version="0.1.5"; sha256="1j3xnwq9faim8cjb6cz54mix7ly8dzxa5qsdglcgl2gfbvzbb9s1"; depends=[BiDAG mvtnorm Rcpp]; }; BetaBit = derive2 { name="BetaBit"; version="2.1"; sha256="1c7hrv21pllcv766hlyc47ivsip0vhi2ld6mj8r42icssgw3jsgn"; depends=[digest]; }; @@ -498,12 +506,11 @@ in with self; { BeyondBenford = derive2 { name="BeyondBenford"; version="1.4"; sha256="04jdx35955g44v2is6zxfw1gip7zh3li8divc7iy5hl0jrshfhv3"; depends=[ggplot2]; }; Bhat = derive2 { name="Bhat"; version="0.9-12"; sha256="0jrn57v90anxsdasfwn3c4mxwzz8b5nbvsn5c57d71xfdza4lh6f"; depends=[MASS]; }; BiBitR = derive2 { name="BiBitR"; version="0.3.1"; sha256="0wfwph6nw12hb43j14i9ycj8m2zn0m5ynp7afq9cray8rbgvxfv6"; depends=[biclust cluster dendextend foreign lattice randomcoloR viridis]; }; - BiCausality = derive2 { name="BiCausality"; version="0.1.2"; sha256="0m2z16mfwxkrv1n8w56qxb8mwsgarl3sm54spngvf5mcqg9x30p5"; depends=[]; }; - BiDAG = derive2 { name="BiDAG"; version="2.1.3"; sha256="103v2w1pgkgpin899jr3iz8yxj79bxmxv9k72gjb5lbmk27xwwcx"; depends=[coda graph Matrix pcalg RBGL Rcpp Rgraphviz]; }; + BiCausality = derive2 { name="BiCausality"; version="0.1.3"; sha256="063qf3vfwxn0xp4j7rs4rz4zqhp2al5r3yhkw5lvf1882b3dqmis"; depends=[]; }; + BiDAG = derive2 { name="BiDAG"; version="2.1.4"; sha256="0gncxn558mdasr63jvqyavd6nhg6762rk0g0a2b7hfvcivjb6bd5"; depends=[coda graph Matrix pcalg RBGL Rcpp Rgraphviz]; }; BiDimRegression = derive2 { name="BiDimRegression"; version="2.0.1"; sha256="00zcvk5v8rn3dp02sivs5z7cch9y8csp5cjhhs4ragdgcry0c3i5"; depends=[Formula]; }; BiProbitPartial = derive2 { name="BiProbitPartial"; version="1.0.3"; sha256="0y19b8bkwr7rpygmj03013slmfbyd7aj6714hm14w5rdbnckymw3"; depends=[coda Formula mvtnorm numDeriv optimr pbivnorm Rcpp RcppArmadillo RcppTN]; }; BiSEp = derive2 { name="BiSEp"; version="2.2"; sha256="1ha7rc1q54dr2xl4bpkiwl703igmmi9qphsgv2h0flq7iz0gr351"; depends=[AnnotationDbi GOSemSim mclust]; }; - BiTrinA = derive2 { name="BiTrinA"; version="1.3"; sha256="0sjq5a21vpsjs0ad0v8gsqlbk3n8virg1hzj0nvgm3h3xqhymh1d"; depends=[diptest]; }; BiasCorrector = derive2 { name="BiasCorrector"; version="0.2.2"; sha256="0a6iiy4iw8w8s4kbjf6r0gji6izf1zdb99r8vfbvgzzwg2pxx4h4"; depends=[data_table DT magrittr rBiasCorrection shiny shinydashboard shinyjs]; }; BiasedUrn = derive2 { name="BiasedUrn"; version="2.0.9"; sha256="02bb81x1hfvhm6qlcvp88bdpm1fhqak9cjbqz1r7fhg2qfxjpims"; depends=[]; }; BibPlots = derive2 { name="BibPlots"; version="0.0.8"; sha256="0zvbyh8spr0ywj64b2rc8jcq4fgn87858km4mkkh17g30ympg767"; depends=[]; }; @@ -534,7 +541,7 @@ in with self; { BiocManager = derive2 { name="BiocManager"; version="1.30.20"; sha256="1snm2sjr7cakb7hvi5dylrbj5nbar0757jzyd5d7igdbhxv2vrxr"; depends=[]; }; Biocomb = derive2 { name="Biocomb"; version="0.4"; sha256="0jqfac81r5731m0i9jq7v5ns9263p8r7i03jyz10y915kfr6ikh6"; depends=[arules class e1071 FSelector gtools MASS nnet pamr pROC randomForest Rcpp rgl ROCR rpart RWeka]; }; Biodem = derive2 { name="Biodem"; version="0.5"; sha256="1phnq6zq96i6z7jj196png3spjpbbx5p2s8iya0vvbfik12ivzkc"; depends=[]; }; - BiodiversityR = derive2 { name="BiodiversityR"; version="2.15-1"; sha256="05ryfn517dwcdl84k4p9h66g4dzwqqmykylyvz5gsjj3x1gh9aa8"; depends=[ggplot2 Rcmdr vegan]; }; + BiodiversityR = derive2 { name="BiodiversityR"; version="2.15-2"; sha256="1hhv7amdf3lx5jymkn1pvgrdm1bzvvn270wk8pjpj3rdmfjszj4g"; depends=[ggplot2 Rcmdr vegan]; }; Bioi = derive2 { name="Bioi"; version="0.2.10"; sha256="1ay8889490nfhxhh72fvk9z4h58xknm2b145xhbx2wbzj65zf9ib"; depends=[assertthat dplyr igraph Rcpp]; }; Bios2cor = derive2 { name="Bios2cor"; version="2.2.1"; sha256="0xj7ab9a463p4a67y0hlv6mfd08xf8didkn2mwrfa7gxjqqvix4z"; depends=[bigmemory bio3d circular igraph]; }; Biostatistics = derive2 { name="Biostatistics"; version="1.0.4"; sha256="1fcrj53rqg7mdhrrsl95l0n6hycb0863isch2f6zzsqdqbxhq7dh"; depends=[learnr]; }; @@ -582,12 +589,13 @@ in with self; { BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="7.0.5"; sha256="0l8fz1bl1bxmlgvsg5l94ahf0rxc4yr3da53sxv5r2x4kyq2ymx7"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; }; BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.1-2"; sha256="0vss3ib74cz2zn1afmrvllawghj9z2ay4x1ysvk4rqvjmiia4a2i"; depends=[brglm gtools lme4 qvcalc]; }; BrailleR = derive2 { name="BrailleR"; version="0.32.1"; sha256="0hnwfn3z9d22jp9xqgz7sz3yqlay863ys9czvd07xyscqpzq973k"; depends=[devtools dplyr extrafont ggplot2 gridGraphics gridSVG hunspell knitr magrittr mathjaxr moments nortest reticulate rlang rmarkdown roloc rolocISCCNBS whisker XML xtable]; }; - BrainCon = derive2 { name="BrainCon"; version="0.2.0"; sha256="0a95jlbll4smi32z7ykf64cyrkscnb7shzj10i1p1hsf90dwi7sv"; depends=[glmnet MASS]; }; - BranchGLM = derive2 { name="BranchGLM"; version="2.1.0"; sha256="0356p4w7m7cw1vwvg2h1n7k74lgq7y7hy4h7146yk7j11hf1zhj2"; depends=[BH Rcpp RcppArmadillo]; }; + BrainCon = derive2 { name="BrainCon"; version="0.3.0"; sha256="137pagkjb4xzk3skmsf5vlp8q0k79zl9xjz8wwda1mdrknkdnbj6"; depends=[glmnet MASS]; }; + BranchGLM = derive2 { name="BranchGLM"; version="2.1.1"; sha256="15hszk2izi1lif2p7siw4v8vj0l3k4787bf2qwdz4zpl433jzvvm"; depends=[BH Rcpp RcppArmadillo]; }; Branching = derive2 { name="Branching"; version="0.9.4"; sha256="1c209gdasm7qipv2gg4d1hr0jmhnzz5rddgjxb7xacazc0c2mhff"; depends=[]; }; BrazilMet = derive2 { name="BrazilMet"; version="0.2.0"; sha256="0pcr665j4balmcm4sq6l19nmhpbs7ayw5dljsdxr91bn6srb33b3"; depends=[dplyr readxl stringr]; }; BreakPoints = derive2 { name="BreakPoints"; version="1.2"; sha256="125fvzkmfnriyd4y4nywj5ihm766xlsyi7dpnq57fa9d38ffbyf2"; depends=[MASS zoo]; }; Brobdingnag = derive2 { name="Brobdingnag"; version="1.2-9"; sha256="07p9416rdzfyiigbglxjpbcg7pfly9nw19yn2mwg98621cjjs0gr"; depends=[Matrix]; }; + BrokenAdaptiveRidge = derive2 { name="BrokenAdaptiveRidge"; version="1.0.0"; sha256="0f46wwyfcqslk25cbm63pbnp8bwamqhr4g4wdlrqn666yiwn1sc2"; depends=[bit64 Cyclops futile_logger]; }; BrownDog = derive2 { name="BrownDog"; version="0.2.1"; sha256="0wnf1jcf4cakbvj9j1l7jk9mq7gd4j1il1ha2vglghqn04f27938"; depends=[httpuv jsonlite RCurl]; }; Brq = derive2 { name="Brq"; version="3.0"; sha256="1gppp959i9kr8pdvn336v28gg9h0jl8qg6pqvzvp5wf257z8m4l8"; depends=[]; }; Brundle = derive2 { name="Brundle"; version="1.0.9"; sha256="0z17wgmi272738n8pn6r60v5gbg8cbmwhc94s8f3vipa44h690bc"; depends=[DESeq2 DiffBind lattice Rsamtools]; }; @@ -608,10 +616,10 @@ in with self; { CADFtest = derive2 { name="CADFtest"; version="0.3-3"; sha256="06bwv728ckalzibxginzfica24w18m4g87i0i064m3q89ghmnlqm"; depends=[dynlm sandwich tseries urca]; }; CADStat = derive2 { name="CADStat"; version="3.0.8"; sha256="0wdglw1vyd5gz70r9ma0mwshvizv39nb4ahp8pvr70c4qqzsfhc0"; depends=[bio_infer car gdata gmodels JavaGD JGR lattice MASS quantreg rJava rpart XML]; }; CAISEr = derive2 { name="CAISEr"; version="1.0.17"; sha256="01gxxq9bfrrishzawmqh47byhc3szfss9bmcsh1p2gi9ml6aqcay"; depends=[assertthat ggplot2 gridExtra pbmcapply]; }; - CALANGO = derive2 { name="CALANGO"; version="1.0.12"; sha256="1v5dkcakphyzlan4byrxp5kyhaysrpi6bzivx814hhkwx08wfm02"; depends=[ape assertthat BiocManager dendextend DT ggplot2 heatmaply htmltools htmlwidgets knitr nlme pbmcapply pkgdown plotly rmarkdown taxize]; }; + CALANGO = derive2 { name="CALANGO"; version="1.0.16"; sha256="1rs992i6xmisx180yyc6z7qlig9a4kj7r3vr5ysf6kcgycj72nj1"; depends=[ape assertthat BiocManager dendextend DT ggplot2 heatmaply htmltools htmlwidgets knitr nlme pbmcapply pkgdown plotly rmarkdown taxize]; }; CALF = derive2 { name="CALF"; version="1.0.17"; sha256="021x1gp0493g6qnfih755c0xcddz77i3p22bgjlx1lpzgqmrgrki"; depends=[data_table ggplot2]; }; CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="1.0-7"; sha256="1fspn6wgr0kc7j4ixx24c706kzrgjhi1b1w28izpfxm4r89zk08s"; depends=[mice mvtnorm randomForest]; }; - CAMAN = derive2 { name="CAMAN"; version="0.76"; sha256="01r0wbsz24sh3rh9m64cgabgy1rf4y4cg36vmc23v01cjmz75wr0"; depends=[mvtnorm sp]; }; + CAMAN = derive2 { name="CAMAN"; version="0.77"; sha256="1213lh2zbcv50djcv23k1g66kdxzj527w86s0dl6j0skmy98dy8i"; depends=[mvtnorm sp]; }; CAMML = derive2 { name="CAMML"; version="0.2.3"; sha256="0qzp5hmsrq89jvizsvjrp1q01f9nc3fbn7ka964xp75f6pvckph6"; depends=[AnnotationDbi BiocManager edgeR MASS Matrix org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db Seurat SeuratObject VAM]; }; CANSIM2R = derive2 { name="CANSIM2R"; version="1.14.1"; sha256="1dnzbd9lyqj3w80lx12qxcsbmv8wy6hxknyi5ijp99cfv7kaq1kc"; depends=[downloader Hmisc reshape2]; }; CARBayes = derive2 { name="CARBayes"; version="5.3"; sha256="03gfid6bzihp4xyinkdn9f1mpa13wl3avp71xrdmsj3ja8sx1qcb"; depends=[CARBayesdata coda dplyr GGally leaflet MASS MCMCpack Rcpp sf spam spdep truncnorm]; }; @@ -619,12 +627,12 @@ in with self; { CARBayesdata = derive2 { name="CARBayesdata"; version="3.0"; sha256="03m0r6n10ssljhliipvslwxgcpv0whvlj27d7awa7sp37j3aafx5"; depends=[sf]; }; CARM = derive2 { name="CARM"; version="1.0.0"; sha256="19g2czy6jhws7a1z8vpvim0cqkxakpv5k3q4kr0q0hsmsv4am17a"; depends=[arrangements dplyr MASS]; }; CARME = derive2 { name="CARME"; version="0.1.1"; sha256="0nam14g052swb44sw07as4agk0z47f7mc1kqlj0z9m1ywsbisnpl"; depends=[BH expm MASS Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; - CARRoT = derive2 { name="CARRoT"; version="2.5.2"; sha256="1dyxmllp01wb2yrmcwb47n5zwyzfrdaqhif4bcpmcgfybqfxical"; depends=[doParallel foreach nnet Rdpack]; }; + CARRoT = derive2 { name="CARRoT"; version="3.0.0"; sha256="0ijp8dc2c3jp8sk443jfgyy4q7yxlcd0jk6hrzm57jbnpwbmjxpv"; depends=[doParallel foreach nnet Rdpack]; }; CARlasso = derive2 { name="CARlasso"; version="0.1.2"; sha256="05r5n5bh0fpwfigr6czh9pg29zyrw73idfvs9qm8vr3dvcmvc42r"; depends=[coda ggplot2 ggraph igraph MASS Matrix Rcpp RcppArmadillo RcppProgress]; }; CASCORE = derive2 { name="CASCORE"; version="0.1.1"; sha256="19v0cki0hdnw5nakakpahc5yz32ih379kagpv2aygzgq9mfwnfam"; depends=[igraph pracma reshape2]; }; CASMAP = derive2 { name="CASMAP"; version="0.6.1"; sha256="1447d4gflan2093fb68inb2ysx5svb9vhnjc7lnkgpjsiam4p8yy"; depends=[Rcpp]; }; CASMI = derive2 { name="CASMI"; version="1.0.0"; sha256="0nhjkvaa27l8j390sl220ckkjbgqj3dm8pnvw58fnprjhi9203sc"; depends=[entropy EntropyEstimation]; }; - CAST = derive2 { name="CAST"; version="0.7.1"; sha256="05kz6dp37nfs3dq1ql7vy514857yqnqbznlbzp1qsgadqrs657a8"; depends=[caret data_table FNN ggplot2 lattice plyr zoo]; }; + CAST = derive2 { name="CAST"; version="0.8.0"; sha256="05faq7p8d4x1i174s2ig27ybd89i30d72kalsaaf2qjfsimjfp42"; depends=[caret data_table FNN ggplot2 lattice plyr zoo]; }; CATT = derive2 { name="CATT"; version="2.0"; sha256="12xdspl1gbf51snyrl44nn7alfyccdfihibkgvzr66lrby8b8fhg"; depends=[]; }; CATTexact = derive2 { name="CATTexact"; version="0.1.1"; sha256="07ciln6cfvqya7dwwn6mhd9lk2833hypm4badizgfi2k749d1p00"; depends=[]; }; CAinterprTools = derive2 { name="CAinterprTools"; version="1.1.0"; sha256="07rvi91ysqyfwagmip0cnqjahv1n8slicd5hznqf5v3l841xh7p7"; depends=[ca classInt cluster FactoMineR ggplot2 ggrepel Hmisc RcmdrMisc reshape2]; }; @@ -638,24 +646,26 @@ in with self; { CCA = derive2 { name="CCA"; version="1.2.1"; sha256="1l4vp8yd42rpsm40szjfzhvbb5c7kl7yf4346i0940s6gk7bzzi8"; depends=[fda fields]; }; CCAMLRGIS = derive2 { name="CCAMLRGIS"; version="4.0.4"; sha256="1in7prc7w0bxybkwwccnmjv118xnf7wvfyk8g9hrk3296aglsf46"; depends=[dplyr geosphere magrittr raster sf sp stars terra]; }; CCM = derive2 { name="CCM"; version="1.2"; sha256="1mhl7yppniybdffylddbbb65n7gmv029fb46wlsxm4yf2xkplmwy"; depends=[]; }; + CCMMR = derive2 { name="CCMMR"; version="0.1"; sha256="0d8fbgnjvy4bh1msbvm125q2v9j3h7zdnijdhi222hcpkvax5z8b"; depends=[r2r RANN Rcpp RcppEigen]; }; CCP = derive2 { name="CCP"; version="1.2"; sha256="067nf1gag3ya7v9vzcpvallga5dr243q0q07fd370k0zynmhcfby"; depends=[]; }; CCTpack = derive2 { name="CCTpack"; version="1.5.2"; sha256="1kkxsk9x4jz2bvldmba7fsri3zc1cjz15z0xicjmfc7lj72ngdig"; depends=[MASS mvtnorm polycor psych R2jags rjags]; }; CCWeights = derive2 { name="CCWeights"; version="0.1.6"; sha256="0in3pl1n48jal6f7kiyw60by11vbga8vr45x0wywghd7dz60ppfv"; depends=[bs4Dash dplyr DT fresh magrittr plotly readr readxl rmarkdown shiny]; }; CDFt = derive2 { name="CDFt"; version="1.2"; sha256="19axaf3bh9gasnsfamd5ych1jn751scaplgwpmsf3liazcqqpa61"; depends=[]; }; CDLasso = derive2 { name="CDLasso"; version="1.1"; sha256="0n699y18ia2yqpk78mszgggy7jz5dybwsi2y56kdyblddcmz1yv7"; depends=[]; }; CDM = derive2 { name="CDM"; version="8.2-6"; sha256="1lcq3i5rlyqkc12c26kj0x4fm2gh1jsisp6kbf59y3hjdkiqajhl"; depends=[mvtnorm polycor Rcpp RcppArmadillo]; }; - CDMConnector = derive2 { name="CDMConnector"; version="0.5.1"; sha256="0r2c7fhcyzrxa839wdq6mm2ms2ymqv8iskl40h7ngkk92h5waf2x"; depends=[checkmate cli DBI dbplyr dplyr fs glue jsonlite lifecycle magrittr pillar purrr readr rlang stringr tidyselect waldo withr]; }; + CDMConnector = derive2 { name="CDMConnector"; version="0.6.0"; sha256="0fc6s3gvpp1gkiifi834w5amig0nzcjbxlinfz65pf155ilpdq8z"; depends=[checkmate cli DBI dbplyr dplyr fs generics glue jsonlite lifecycle magrittr pillar purrr readr rlang stringr tidyselect waldo withr]; }; CDNmoney = derive2 { name="CDNmoney"; version="2012.4-2"; sha256="1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"; depends=[]; }; CDROM = derive2 { name="CDROM"; version="1.1"; sha256="0mvhqs4m8jp39x1rk31a1sqqmfq1avcnasgh8bizlyxx62igmi1b"; depends=[]; }; CDSS = derive2 { name="CDSS"; version="0.1-0"; sha256="1y0pjnxa8m5l9r3apzdagz41a6r8dc5yycv1avy30zfhjjy9m5a7"; depends=[openxlsx readODS]; }; CDVineCopulaConditional = derive2 { name="CDVineCopulaConditional"; version="0.1.1"; sha256="1wyy324vrwipdsq0p021bj1gdhyxg09g3dkw8wv5v6rfrrs84m9k"; depends=[combinat VineCopula]; }; - CDatanet = derive2 { name="CDatanet"; version="2.1.0"; sha256="1gv66ck5c2qiwl13zi67k3bjxyai3a4q8klq98br10s1bj8spjv9"; depends=[ddpcr Formula formula_tools Matrix Rcpp RcppArmadillo RcppDist RcppEigen RcppNumerical RcppProgress]; }; + CDatanet = derive2 { name="CDatanet"; version="2.1.1"; sha256="1rai76jgyd86fabdzhzpl2nr47zgnihnr8hscdkyp5dpazsc1swn"; depends=[ddpcr Formula formula_tools Matrix Rcpp RcppArmadillo RcppDist RcppEigen RcppNumerical RcppProgress]; }; CEC = derive2 { name="CEC"; version="0.11.0"; sha256="0qa46iq3m510sjb3ap4m5lkaajk15vi3xjwqgnpdw0jh0m0vkabf"; depends=[]; }; CEDA = derive2 { name="CEDA"; version="1.1.0"; sha256="1m03l552zql3cqra1r1zdjcw6abpfdhvn3dkbhdhmnmg59fb6bfb"; depends=[dplyr ggplot2 ggprism ggridges ggsci limma mixtools]; }; CEDARS = derive2 { name="CEDARS"; version="1.90"; sha256="1fngyc08kvilfd2d75gjg0s6c5zvjywym35sk568yzxnsz89b7yy"; depends=[fastmatch jsonlite mongolite readr shiny udpipe]; }; + CEEMDANML = derive2 { name="CEEMDANML"; version="0.1.0"; sha256="0hc5sx1zvxj3j5psgcgzhw6l9zrvbbsnpw6qr7ww82bjjr3wbi3c"; depends=[aTSA caret e1071 earth fGarch FinTS forecast LSTS neuralnet pso Rlibeemd tseries]; }; CEGO = derive2 { name="CEGO"; version="2.4.2"; sha256="00nc6c1b6ylqlh6hm8lh8nasz7q12pqckdqbf1yq21khki9ldbll"; depends=[DEoptim fastmatch MASS Matrix ParamHelpers quadprog]; }; CENFA = derive2 { name="CENFA"; version="1.1.1"; sha256="0b1zpazbqynlnmf8k25r5bjmidymskqc96xpmwqkl23xlz1f2x3s"; depends=[doSNOW foreach magrittr pbapply raster Rcpp snow sp]; }; - CEOdata = derive2 { name="CEOdata"; version="1.3.0.1"; sha256="1w2lb7lghapaf29sqs8l60xzzd4639y32bd08xv881v1ks5sigzr"; depends=[dplyr haven jsonlite stringr urltools]; }; + CEOdata = derive2 { name="CEOdata"; version="1.3.1"; sha256="04996ia8b4hxgy0s5jfy1xgskqlg419z3lgyz9xf4bgavnk2qbrh"; depends=[dplyr haven jsonlite stringr urltools]; }; CERFIT = derive2 { name="CERFIT"; version="0.1.0"; sha256="1mhyn5iyvnqqx881jfvacyxaldvn5q9h1jpsfy14sgkdjf75274s"; depends=[CBPS glmnet partykit randomForest Rcpp RcppArmadillo twang]; }; CEoptim = derive2 { name="CEoptim"; version="1.2"; sha256="0bbjrhl63cbx1rsr5gclbqhjpnjid8ynk2ygaf1chf8z381n7650"; depends=[MASS msm sna]; }; CFAcoop = derive2 { name="CFAcoop"; version="1.0.0"; sha256="1qnqbqh3p8grp6mxhqrwfm1nf1sxhqa6pjxkpf7vk9nx40g815gn"; depends=[Hmisc]; }; @@ -665,9 +675,10 @@ in with self; { CGE = derive2 { name="CGE"; version="0.3.3"; sha256="0q1fv62159cx9z25488fxf6a6fi1m59hdh60ldypsjwil77q0s3i"; depends=[]; }; CGGP = derive2 { name="CGGP"; version="1.0.3"; sha256="1g70hjpc33dnr6yw42kjhy9ngba05qzk5mr7md6pqhmbx0ykhr6g"; depends=[Rcpp RcppArmadillo]; }; CGManalyzer = derive2 { name="CGManalyzer"; version="1.3"; sha256="1wmp5im18s447rjkj891skrm7558xkqlbx43n9hyxiqg49zq1ng9"; depends=[]; }; - CGNM = derive2 { name="CGNM"; version="0.6.2"; sha256="1fpmm8q25wnqf3l6126vhbjhlls0a8cwqrmy97hqssinh10b3kls"; depends=[ggplot2 MASS]; }; + CGNM = derive2 { name="CGNM"; version="0.6.5"; sha256="1h0102vmxhk1hzdb5apxilv5n0fcc0m0p3c3apf4yzgwwarkyg0b"; depends=[ggplot2 MASS]; }; CGP = derive2 { name="CGP"; version="2.1-1"; sha256="05a6gydlb99yk2jpy2hyg4c30hqyp8dg2i9dmbjc1n5cmgpg3im9"; depends=[]; }; CGPfunctions = derive2 { name="CGPfunctions"; version="0.6.3"; sha256="12l3ww9wfrk8i0a63wv5h4ayqj6fj5fz5yvkiskvaaida32vds2m"; depends=[BayesFactor DescTools dplyr forcats ggmosaic ggplot2 ggrepel paletteer partykit purrr rlang scales sjstats stringr tidyr]; }; + CHEMIST = derive2 { name="CHEMIST"; version="0.1.5"; sha256="00alby5x01a2izmzk0ilkx5jgkwavsaj18w3kra444pib0ncrl92"; depends=[LaplacesDemon MASS XICOR]; }; CHFF = derive2 { name="CHFF"; version="0.1.0"; sha256="0jv75p1bnwsad2vpxf1zwq97al9xxhk2hpnpsilf0jn0w7g9b2d3"; depends=[]; }; CHMM = derive2 { name="CHMM"; version="0.1.1"; sha256="07fdvnwhblwvljbl2z0vs42nwki67yl5ly3fj40p50k3rnqqmavj"; depends=[mclust]; }; CHNCapitalStock = derive2 { name="CHNCapitalStock"; version="0.1.0"; sha256="1w8abj1rxkpql696dr6w19xsgxjmkm0jwnln7lp48fnxdsa424x8"; depends=[dplyr magrittr]; }; @@ -683,7 +694,6 @@ in with self; { CIMTx = derive2 { name="CIMTx"; version="1.2.0"; sha256="1jx99vh620zqwp7p4bjcxa3n0kg6w6q88kklv9f9x44894mrd56a"; depends=[arm BART cowplot doParallel dplyr foreach ggplot2 magrittr Matching metR mgcv nnet stringr SuperLearner tidyr tmle twang WeightIt]; }; CINE = derive2 { name="CINE"; version="0.1.3"; sha256="0y5xadsvmciv9cqx6sa8qs1ss7zm55l3304gzdaadmqbsnsq75j8"; depends=[dplyr tidyr tidytext tm]; }; CINID = derive2 { name="CINID"; version="1.3-0"; sha256="06n5bwjr44rx0m12xradzaca26rvh01mlimbn0gr3jfzkmyj2f1g"; depends=[]; }; - CINNA = derive2 { name="CINNA"; version="1.2.0"; sha256="0pijsr3ciqi9i5pi3ppc8zz573lzwly0mwglz2xdfkwmwy2bzdqi"; depends=[centiserve circlize corrplot dendextend factoextra FactoMineR GGally ggplot2 igraph intergraph network pheatmap plyr qdapTools Rtsne sna viridis]; }; CINmetrics = derive2 { name="CINmetrics"; version="0.1.0"; sha256="1csh22b7ap7isnrjak7yp32hasxq8x4j094i9shrnzsz6sxcmc28"; depends=[]; }; CIPerm = derive2 { name="CIPerm"; version="0.2.3"; sha256="1arb9jswnjmw8fgabwn3ap5wi57rwgh6dnq9c19v1qbcx8lhzs7c"; depends=[matrixStats]; }; CIS_DGLM = derive2 { name="CIS.DGLM"; version="0.1.0"; sha256="0c7jxfb8gaklf6p83152wb2nszm2p806p3n523xajf4ha368d3kq"; depends=[dglm dplyr ggplot2 RColorBrewer]; }; @@ -708,7 +718,7 @@ in with self; { CMMs = derive2 { name="CMMs"; version="1.0.0"; sha256="0wdzyg7kwad8z6kdijbpj8dmhyv17rg027rspv8hxlg8r3l8bd47"; depends=[dplyr fastDummies forcats ggplot2 robCompositions survey]; }; CMShiny = derive2 { name="CMShiny"; version="0.1.0"; sha256="0ciis3930yhn4dmazsg2yp7wi9hdfj5slr032x8qfllxis7m4k0w"; depends=[caret e1071 epitools Matrix rmarkdown shiny shinyMatrix]; }; CMapViz = derive2 { name="CMapViz"; version="0.1.0"; sha256="1s7xyp13p7fpbq0bghk07dfv90339kxs7k3343jqhrn8djf3as67"; depends=[dplyr ggplot2 readxl reshape2 scales stringr]; }; - CMplot = derive2 { name="CMplot"; version="4.2.0"; sha256="1icb7r8wj7x9vgcysr9qi28nvgxb9j3dhqw090smpp6d7b39zrjd"; depends=[]; }; + CMplot = derive2 { name="CMplot"; version="4.3.1"; sha256="15dvim5sngzgx7hgy280gdimbqy9508vh2ic8izkhj529n0mnanz"; depends=[]; }; CNAIM = derive2 { name="CNAIM"; version="2.1.4"; sha256="1bwjglhsv8bd58clzlsa34ag0djyim85p0ilfclx4all1ycrz1k2"; depends=[dplyr ggplot2 jsonlite magrittr plyr r2d3 stringr tibble]; }; CNLTreg = derive2 { name="CNLTreg"; version="0.1-2"; sha256="07yi0ajil1113663v3gp5d3453r4l9qm442jnpydx4ygvjk7m2ha"; depends=[adlift miscTools nlt]; }; CNLTtsa = derive2 { name="CNLTtsa"; version="0.1-2"; sha256="1vy0jjg6s8yvsvkx4pin183y5bnikm5cmjcpa9znz9dj1w6hwr5r"; depends=[adlift CNLTreg fields nlt]; }; @@ -720,6 +730,7 @@ in with self; { COINr = derive2 { name="COINr"; version="1.1.2"; sha256="162936aqypgxr59nnyk4nsmd0nbkdxddkwvwdw7ag7wp8zdkphx6"; depends=[ggplot2 openxlsx readxl rlang]; }; COLP = derive2 { name="COLP"; version="1.0.0"; sha256="0259s058rn7fyprma5frx7sdjv4qk9hxijpi9xh7qyz5jzzsi660"; depends=[combinat MASS]; }; COMBAT = derive2 { name="COMBAT"; version="0.0.4"; sha256="0m700pl33frdpc9y16y4zyh1ixpardh0r5kmz8a78jrh1acn30id"; depends=[corpcor mvtnorm]; }; + COMBO = derive2 { name="COMBO"; version="1.0.0"; sha256="12k5lchxdxql3q7si05404f8dc26xjxqf95mq5jykgp9chgl6i5w"; depends=[dplyr Matrix rjags SAMBA tidyr turboEM]; }; COMIX = derive2 { name="COMIX"; version="1.0.0"; sha256="0dhc3zb8jkfq8b9vj8m2a9jbd9fc7xxvhz16l8xhz9v5iffgk6hh"; depends=[coda dplyr ggplot2 Rcpp RcppArmadillo RcppEigen RcppNumerical rlang stringr tidyr]; }; COMPoissonReg = derive2 { name="COMPoissonReg"; version="0.8.0"; sha256="0yaq7mfqcdyp077xhmqd3rx0b77y2rg1yz89q4llgiwfg244y6mp"; depends=[numDeriv Rcpp]; }; CONCUR = derive2 { name="CONCUR"; version="1.4"; sha256="0455jmc8grcpmipcz2rr6zdhxjfi0gd5zj46lyvh75k6wn2p6265"; depends=[CompQuadForm dplyr mgcv]; }; @@ -730,7 +741,7 @@ in with self; { COUNT = derive2 { name="COUNT"; version="1.3.4"; sha256="02f7779fy0d2bql88x5v9csbxljhnyvl8wb8h83xrmwl7kaxsdpy"; depends=[MASS msme sandwich]; }; COVID19 = derive2 { name="COVID19"; version="3.0.3"; sha256="0idvqsqdsjm2dn7iipr0mh0xlgxfwavajxbz08wigngcaic192iy"; depends=[data_table R_utils]; }; COVIDIBGE = derive2 { name="COVIDIBGE"; version="0.1.9"; sha256="0hr879bk5sfyag21b0qy68qazbkswca1a2iwlgd9r6zx853wbad2"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; - CP = derive2 { name="CP"; version="1.6"; sha256="18zblf13riiz3mq3hkvg6vhiwjzpsn6mvgc2p0bqyldy98v4aisd"; depends=[survival]; }; + CP = derive2 { name="CP"; version="1.8"; sha256="1ydpkk3zqz3r2szny68wqa4hz5iczq1q0hkkcbw7na8sg68sgriq"; depends=[survival]; }; CPAT = derive2 { name="CPAT"; version="0.1.0"; sha256="0zygncwww3cazwmx06bhzq0g41xcqfpw307azdhygc8jmcy6qj71"; depends=[purrr Rcpp RcppArmadillo Rdpack]; }; CPBayes = derive2 { name="CPBayes"; version="1.1.0"; sha256="1kw0r8spqm0s7cb3w5gplw67mhfmcbbf3ligngbary77ghkzirnb"; depends=[forestplot MASS mvtnorm purrr]; }; CPC = derive2 { name="CPC"; version="2.3.0"; sha256="1lh6g2d2xk41nnafcx2qvcigb957ccwq19vp1fcmxq8gmzcg3yr4"; depends=[cluster dbscan Rfast]; }; @@ -743,7 +754,7 @@ in with self; { CR2 = derive2 { name="CR2"; version="0.2.1"; sha256="1j9wkpfr6bk07sj1swcjih12qz0cin811k69ihizsi4190m5f49k"; depends=[broom dplyr generics lme4 magrittr Matrix nlme performance tibble]; }; CRABS = derive2 { name="CRABS"; version="1.1.0"; sha256="0vvywgxhik9bw3bk5yjq9rhfkwmjb67wz4yh61kp8zdijwv6mb6d"; depends=[ape colorspace deSolve dplyr ggplot2 latex2exp magrittr patchwork pracma tibble tidyr]; }; CRANsearcher = derive2 { name="CRANsearcher"; version="1.0.0"; sha256="09gw1s28gb0l2cn4w3asl6zlr7wfacxwafbdrayajwckyfkjl5dl"; depends=[curl dplyr DT lubridate miniUI shiny shinyjs stringr]; }; - CRE = derive2 { name="CRE"; version="0.2.1"; sha256="0krjsgh4jfj7sp03n22xrhxjf5zllip195d73lfbcsmf76lrzp1n"; depends=[bartCause bcf data_table gbm ggplot2 glmnet inTrees logger magrittr MASS randomForest RRF stabs stringr SuperLearner xgboost xtable]; }; + CRE = derive2 { name="CRE"; version="0.2.3"; sha256="1az2qdskf8l0dfvs7qsnpdiv1mnw47i8pz6ic4v0i8kldar0w6bq"; depends=[bartCause data_table gbm ggplot2 glmnet inTrees logger magrittr MASS randomForest RRF stabs stringr SuperLearner xgboost xtable]; }; CREAM = derive2 { name="CREAM"; version="1.1.1"; sha256="1lccpwn6c5pmykgf689gvvpqdcilkys4vclpxjhllhanjrfhcs3q"; depends=[]; }; CREDS = derive2 { name="CREDS"; version="0.1.0"; sha256="1llgxsmpk13gq75y2r3qiwwjcl87bknkryaw5dq0ndf17rj31mw8"; depends=[MASS]; }; CRF = derive2 { name="CRF"; version="0.4-3"; sha256="0jlcc1ffd2z7sz1szbi4vrp5rihmcp18bsw27x02ivi6l21nyivf"; depends=[Matrix]; }; @@ -753,16 +764,16 @@ in with self; { CRTSize = derive2 { name="CRTSize"; version="1.2"; sha256="00shm1d32gwssf230rxjnn41rvxpli6jnx0axp69bjvfm8zqynqj"; depends=[]; }; CRTgeeDR = derive2 { name="CRTgeeDR"; version="2.0.1"; sha256="0sqsgs8qbc6gvzr3l2r8y83nbhz12q3jf2cjlb2xgif15r7sbnxx"; depends=[ggplot2 MASS Matrix]; }; CRWRM = derive2 { name="CRWRM"; version="0.0.1"; sha256="0w6lg5q2c0w5p9vg5qr32pycyl8d1zp0s55jlvf2xhmqx34677hd"; depends=[]; }; + CRediTas = derive2 { name="CRediTas"; version="0.2.0"; sha256="163m37bz99g6qvfbnbvvdv02x6984x5prsbj1d7mq08bnlmj9zr0"; depends=[]; }; CSCDRNA = derive2 { name="CSCDRNA"; version="1.0.3"; sha256="0ym6bzk8n9kf0pvd3h4dv2hhxmmrr54hvs7vccmxrhxikr8ix5iy"; depends=[Biobase BisqueRNA limSolve MAST nlshrink plyr Seurat]; }; CSCNet = derive2 { name="CSCNet"; version="0.1.2"; sha256="0amsrjzpfga66mh6x589whz70xpl0sg10f80x87apxz312rb4r8m"; depends=[caret dplyr furrr future glmnet magrittr prodlim purrr recipes riskRegression stringr survival tibble tidyverse]; }; CSESA = derive2 { name="CSESA"; version="1.2.0"; sha256="0pv6iabq1w22qbhlsbckdvva4n7igpzrjnrahmq83a6wxgvjbf5j"; depends=[Biostrings]; }; CSFA = derive2 { name="CSFA"; version="1.2.0"; sha256="1nkyhk8qhrrlx8v26yw86l954m4xfcxma4pqbhgw95jvqql5h3li"; depends=[elasticnet fabia FactoMineR pls randomcoloR snowFT]; }; CSGo = derive2 { name="CSGo"; version="0.6.7"; sha256="19awbblkx0g58gvd43xs1dmcsn588k185njw3fri8xxbn26xp5jy"; depends=[dplyr extrafont furrr future fuzzyjoin ggplot2 httr jsonlite magrittr purrr stringr]; }; CSHShydRology = derive2 { name="CSHShydRology"; version="1.4.0"; sha256="06hdqdzvfpfn4r6x1d2m24lz2w5sj20fr7d791zqzd16mp767qcc"; depends=[circular dplyr fields ggplot2 ggspatial httr Kendall lubridate magrittr OpenStreetMap plotrix raster rnaturalearth sf stringr tidyhydat timeDate whitebox]; }; - CSIndicators = derive2 { name="CSIndicators"; version="1.0.0"; sha256="17ziy101xvnw6a2x2xnl7846990jjpfq314x2j79cj9630i9n7l4"; depends=[ClimProjDiags multiApply s2dv]; }; + CSIndicators = derive2 { name="CSIndicators"; version="1.0.1"; sha256="01x5lyxw5ca8xqndfxdjzj2jak7kwndqwqb9shz53hj6p5z0wld2"; depends=[multiApply]; }; CSMES = derive2 { name="CSMES"; version="1.0.1"; sha256="1p8wsl9h1f44a7kkj660h1k1v26pp6q1h13rw9l6pikniwdks84c"; depends=[caTools data_table mco ROCR rpart zoo]; }; CSTE = derive2 { name="CSTE"; version="2.0.0"; sha256="0r38pvd83aw9zrq43malw50vlbnknh3b53x3ydj0wxrk95wsmy46"; depends=[dfoptim fda locpol Rcpp survival]; }; - CSTools = derive2 { name="CSTools"; version="4.1.1"; sha256="1a05wv9isrlf7pzhychczvnpvsppnnriaz4jsm78ccg0m9y3wabj"; depends=[abind ClimProjDiags data_table easyVerification ggplot2 maps multiApply ncdf4 plyr qmap rainfarmr RColorBrewer reshape2 s2dv verification]; }; CSclone = derive2 { name="CSclone"; version="1.0"; sha256="0lqsqsgh2sf44fr1r7g179556v294yr1wy7x4320g7adxshrwyh5"; depends=[DNAcopy lpSolve mcclust moments]; }; CSeqpat = derive2 { name="CSeqpat"; version="0.1.2"; sha256="1nqk873cagpn4fba4rmyzb6hni1p5lqcvsr9givrcm0gfx756w1h"; depends=[NLP tm]; }; CTAShiny = derive2 { name="CTAShiny"; version="0.1.0"; sha256="18qw8nx1r4gwlxj9zxn4hllpn29fv3i4fgwyl5fh3qsv9hmbvi0x"; depends=[epitools rpivotTable shiny shinyMatrix]; }; @@ -799,10 +810,12 @@ in with self; { CancerGram = derive2 { name="CancerGram"; version="1.0.0"; sha256="1p612dbn6dxn3nz8m0pzlsbczg3f8gwqk9q0fnxbcdlbll0vf2k0"; depends=[biogram devtools dplyr pbapply ranger shiny stringi]; }; Canek = derive2 { name="Canek"; version="0.2.1"; sha256="1qqlxachv84a6d9c2akzqws3d8zjql0wzfinqh2d855avn3sk8s5"; depends=[bluster FNN fpc igraph irlba matrixStats numbers]; }; Canopy = derive2 { name="Canopy"; version="1.3.0"; sha256="0979hpphzhf4v71jx0shh3l8nffmpsn9l6f8ip2wxzcyx571i1wd"; depends=[ape fields pheatmap scatterplot3d]; }; - CarletonStats = derive2 { name="CarletonStats"; version="2.0"; sha256="0pgzvw6gf8kjv8ndprwp4wlgdgh5sb75ga8z5syfw57fb05v7ac3"; depends=[]; }; + CarletonStats = derive2 { name="CarletonStats"; version="2.1"; sha256="05ljr9z8qfjrcwjk1rp19ra208dm910qc03hci0swkd0g2x3pyph"; depends=[]; }; Carlson = derive2 { name="Carlson"; version="2.0.0"; sha256="0hwgjb9cc1af7r4i34xbjdfrwfz4df9c758p8ky72dsd7xd8agkh"; depends=[Rcpp]; }; Cascade = derive2 { name="Cascade"; version="2.1"; sha256="1hfbv9129rnrjqspjd8wnhw0qrp1m142bixlwddzr6j2sg7r8s20"; depends=[abind animation cluster igraph lars lattice limma magic nnls survival tnet VGAM]; }; CascadeData = derive2 { name="CascadeData"; version="1.4"; sha256="0cbnp8mqv3alsz7b5fa8djg1yd46zkn1f3b0pqww2yn8zavd4fih"; depends=[]; }; + CaseBasedReasoning = derive2 { name="CaseBasedReasoning"; version="0.3"; sha256="0ayckjq53lmdm429bvb4fjsbyy7cp3jgds30swmzq9qf75bnaa55"; depends=[cowplot dplyr ggplot2 pryr purrr R6 ranger Rcpp RcppArmadillo RcppParallel rms survival tidyr]; }; + CaseCohortCoxSurvival = derive2 { name="CaseCohortCoxSurvival"; version="0.0.31"; sha256="1r1ki47i7dp3q9wpw2vbaglnq33b109wlc6s51kfvfnlm8vi4nkp"; depends=[nnet survival]; }; CatDataAnalysis = derive2 { name="CatDataAnalysis"; version="0.1-5"; sha256="19bbilvz9h2bswpm5992c48cm4slc73kf0ny2mp78vhcfadri9cb"; depends=[]; }; CatDyn = derive2 { name="CatDyn"; version="1.1-1"; sha256="0gkaxs7apqhq7mp3chjsyhrnk3qkk11f8p7smmyj6h73888ry8jn"; depends=[BB optimx]; }; CatEncoders = derive2 { name="CatEncoders"; version="0.1.1"; sha256="1q9wzq06lac8z9y8b65alsxpb48bw8wqmifd893kknk51xq6r9kl"; depends=[data_table Matrix]; }; @@ -812,9 +825,8 @@ in with self; { CauchyCP = derive2 { name="CauchyCP"; version="0.1.1"; sha256="0sv1gfvgwqvm7zb3rhlhmfgfwm2i49wzzkg473gdmamvvpvzih43"; depends=[survival]; }; CausCor = derive2 { name="CausCor"; version="0.1.2"; sha256="1m41i4knqh4hddz3s3p62qhx2dmdypm8gfdwlczlja89llx9737b"; depends=[cowplot dplyr ggplot2 magrittr WriteXLS]; }; CausalGAM = derive2 { name="CausalGAM"; version="0.1-4"; sha256="1riz11hfg96iks7734rg692l75nfrd3hmr9gw563j27rkk1nfkl6"; depends=[gam]; }; - CausalGPS = derive2 { name="CausalGPS"; version="0.3.0"; sha256="0pkprqjg7gqq2sz7ci9lflpyamp20qzms1ckw28lh8kr821i7jjx"; depends=[data_table Ecume gam ggplot2 gnm locpol logger MASS polycor Rcpp rlang SuperLearner wCorr xgboost]; }; + CausalGPS = derive2 { name="CausalGPS"; version="0.4.0"; sha256="0bibrdqgnzbsai18v7x89vmjnrlgd27fzdrn219fiz41jyra40jn"; depends=[data_table Ecume gam ggplot2 gnm KernSmooth locpol logger MASS polycor Rcpp rlang SuperLearner wCorr xgboost]; }; CausalImpact = derive2 { name="CausalImpact"; version="1.3.0"; sha256="0h3sh35962vdph72svfdvk6b1gl7wnj2kfkkpcjldbiszlfxp7wx"; depends=[assertthat Boom bsts ggplot2 zoo]; }; - CausalKinetiX = derive2 { name="CausalKinetiX"; version="0.2.1"; sha256="0haxw4vvbw48hlvsl1d1y3xm48qm5vl0d3k5lj89ajwc618nk5jg"; depends=[cvTools deSolve fda glmnet pspline quadprog randomForest sundialr]; }; CausalMBSTS = derive2 { name="CausalMBSTS"; version="0.1.1"; sha256="1mjw2zyddkci6vkbyz3d94l5z1aj3rc2w6lag5igbfv4q0n5qcrp"; depends=[CholWishart forecast KFAS MASS Matrix MixMatrix]; }; CausalModels = derive2 { name="CausalModels"; version="0.2.0"; sha256="19m1qfzssrwmsxiiyqiqby102qmxxcmbyxhggd9bb44z2iicf8cl"; depends=[boot causaldata geepack multcomp]; }; CausalQueries = derive2 { name="CausalQueries"; version="0.1.0"; sha256="1m7i5v4im85lzn9agf9nlf458y76k21h59avg4924bm4hn709lls"; depends=[BH dagitty dirmult dplyr ggdag ggplot2 latex2exp lifecycle Rcpp RcppEigen repr rlang rstan rstantools StanHeaders stringr]; }; @@ -826,12 +838,13 @@ in with self; { CensSpatial = derive2 { name="CensSpatial"; version="3.6"; sha256="10jgr9zvdvm8fgh0llfsxjkd5f565i1qh00zrqxz55is7p4r3h35"; depends=[geoR lattice moments msm mvtnorm numDeriv optimx psych raster Rcpp tlrmvnmvt tmvtnorm]; }; Census2016 = derive2 { name="Census2016"; version="0.2.0"; sha256="1c88jmd565v19w8dbvai10f9y5lyfmzsxsjblc3gdykf9kharvcq"; depends=[data_table]; }; CerioliOutlierDetection = derive2 { name="CerioliOutlierDetection"; version="1.1.9"; sha256="0s3pd4y165v69m4wmg9jlc7dl4gz64la9yic67l3n4242wa84p19"; depends=[robustbase]; }; + Certara_NLME8 = derive2 { name="Certara.NLME8"; version="1.2.3"; sha256="0c84xp4z28vflpj7yi1rwzwq5j6vh5bxi1jsb90fha8kp0l8pdya"; depends=[batchtools data_table reshape xml2]; }; Certara_R = derive2 { name="Certara.R"; version="1.0.0"; sha256="0na4411rxxqjyrxjmj27i9b5lrig2jysazk9fnpvrws8c63zl39y"; depends=[batchtools data_table dplyr DT ggplot2 htmltools jsonlite magrittr plotly remotes reshape rlang shiny shinyjqui shinyjs shinymaterial shinyWidgets sortable ssh xml2]; }; ChIPtest = derive2 { name="ChIPtest"; version="1.0"; sha256="1yn5b5s56k2dbhw6damxj18xbaiz180ym7fiq2i3p2gkcgwpddbz"; depends=[]; }; ChainLadder = derive2 { name="ChainLadder"; version="0.2.17"; sha256="0pkiyapqz6mvg9j37b2m1i4qisq9sl3qska72qljp64vjfmsx9a5"; depends=[actuar cplm ggplot2 lattice MASS Matrix statmod systemfit tweedie]; }; ChangePointTaylor = derive2 { name="ChangePointTaylor"; version="0.2"; sha256="0rf3h7l8l6fw2i489ldcqhsf9ppjzpx298p5ciyp9iyc0zcykz38"; depends=[bench dplyr ggplot2 magrittr purrr Rcpp rlang tidyr]; }; ChangepointTesting = derive2 { name="ChangepointTesting"; version="1.1"; sha256="0gasqf39hhrd2pg2rq4a2aaxwi3syjvmgdiss42wdwb47dww8wil"; depends=[]; }; - ChannelAttribution = derive2 { name="ChannelAttribution"; version="2.0.6"; sha256="174mv7b9jfw240i29b457994iza3wwqx0mjxbpl28af0fba1h4xl"; depends=[Rcpp RcppArmadillo]; }; + ChannelAttribution = derive2 { name="ChannelAttribution"; version="2.0.7"; sha256="0ak7s5l990kfkf5bzggqplss5pd06rfalghk1rzy92js1n1qxrs7"; depends=[Rcpp RcppArmadillo]; }; ChannelAttributionApp = derive2 { name="ChannelAttributionApp"; version="1.3"; sha256="0n9g8wwvc8p5clypl7z23w8fs6d0c47bblijwd4pjwy26bcb4m8h"; depends=[ChannelAttribution data_table ggplot2 shiny]; }; Chaos01 = derive2 { name="Chaos01"; version="1.2.1"; sha256="1wk70l1y0yzbjcjp0r334l1q3hzki0vzn6wbza97mq9pz8wp050r"; depends=[]; }; ChaosGame = derive2 { name="ChaosGame"; version="1.4"; sha256="06d2jm8b3l242yqgbfsr1cclph0l8xdxqfq7xvbghsavzk3lf367"; depends=[colorRamps ggplot2 gridExtra plot3D RColorBrewer rgl]; }; @@ -866,7 +879,6 @@ in with self; { ClimClass = derive2 { name="ClimClass"; version="2.1.0"; sha256="1r836md31z2r5d9xckkbalzbhm4kf5paljv71kxpy53q92k7yi91"; depends=[geosphere ggplot2 reshape2]; }; ClimInd = derive2 { name="ClimInd"; version="0.1-3"; sha256="0n5kd001nkpks16c3msvn2qvzyrjawa2rqwh8zph2qr5hgpwcpg7"; depends=[chron SPEI weathermetrics]; }; ClimMobTools = derive2 { name="ClimMobTools"; version="0.6"; sha256="0v9cm3xn42rd6bkad94ivzm92zjvpfmchingccvn670kiahb41kz"; depends=[httr jsonlite Matrix RSpectra]; }; - ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.3.1"; sha256="1dblw2m3lrzwv5avqsyvrainhssl3pgxff6dfab5jc72mg3c31ql"; depends=[climdex_pcic multiApply PCICt plyr]; }; ClinSigMeasures = derive2 { name="ClinSigMeasures"; version="1.0"; sha256="0fw89a1q92ck32z6w4zn1ldvky6ag1gi7b9bbv10mhmqhq4w3k58"; depends=[]; }; ClinicalTrialSummary = derive2 { name="ClinicalTrialSummary"; version="1.1.1"; sha256="0b5by4sn9yvrvxr9921yqsgp8ma3g1hi2qbp5j9m836db1zjhyla"; depends=[Rcpp]; }; ClinicalUtilityRecal = derive2 { name="ClinicalUtilityRecal"; version="0.1.0"; sha256="17xj9cmdkjrzx7mshka2hlkxh8887sprdqix7fd8jcr9bmc6ad9r"; depends=[caret cowplot ggplot2 lattice nloptr]; }; @@ -889,7 +901,7 @@ in with self; { ClustVarLV = derive2 { name="ClustVarLV"; version="2.1.1"; sha256="0maylgf6czlll5zn3xj68acmllxi4x2r4ri6bdx8vl9apzax1rgy"; depends=[doParallel foreach iterators plyr Rcpp RcppEigen]; }; Cluster_OBeu = derive2 { name="Cluster.OBeu"; version="1.2.3"; sha256="10i7mnaq968my1c5hi8bdsj05m64wlmrf4n4m118is5h1q7zss8r"; depends=[car cluster clValid data_tree dendextend jsonlite mclust RCurl reshape reshape2 stringr]; }; ClusterBootstrap = derive2 { name="ClusterBootstrap"; version="1.1.2"; sha256="1ha50yzc2arlz4c2g7r9w891fk775xfbhz0gky3zxawlsa02213s"; depends=[dplyr magrittr]; }; - ClusterR = derive2 { name="ClusterR"; version="1.3.0"; sha256="1k3rpz8rjw7r2lrx79h62m46hwxrn57hs5n7072g2rnvmc9jx3j2"; depends=[ggplot2 gmp lifecycle Rcpp RcppArmadillo]; }; + ClusterR = derive2 { name="ClusterR"; version="1.3.1"; sha256="1xn0zkgjagfnqagk2yllaa6j8rlxq2f4pn3yqj4gff90bc0cv3kf"; depends=[ggplot2 gmp lifecycle Rcpp RcppArmadillo]; }; ClusterRankTest = derive2 { name="ClusterRankTest"; version="1.0"; sha256="01gzalhibqcdx3a6yc2cm1v77rscva73v5m5m0qkrgqdp9c8ph2a"; depends=[]; }; ClusterStability = derive2 { name="ClusterStability"; version="1.0.4"; sha256="1y88dv7n2cxm5w9pbg36dvx55nzvsnq4vbmx401147xr5p03yk9w"; depends=[cluster copula Rcpp WeightedCluster]; }; ClusteredMutations = derive2 { name="ClusteredMutations"; version="1.0.1"; sha256="1n31nnvpjh1faw751k8m3ga3wfl0yhdpnszwckqhfzlma1jr8z04"; depends=[seriation]; }; @@ -905,7 +917,7 @@ in with self; { CoTiMA = derive2 { name="CoTiMA"; version="0.6.2"; sha256="0394a6m1hg9klcgpk4s51rql8k2084cbs6bzpgrsbk3gnvcxy8s3"; depends=[abind crayon ctsem doParallel foreach lavaan MASS MBESS OpenMx openxlsx psych rootSolve RPushbullet scholar stringi zcurve]; }; CodataGS = derive2 { name="CodataGS"; version="1.43"; sha256="1bjn6s1f5jn64gwrvjz5kvwfkbqrqhavib6dj9k37rb5nzqkwhp6"; depends=[Matrix]; }; CodeDepends = derive2 { name="CodeDepends"; version="0.6.5"; sha256="0l7kiv3awx50glf5cs841b4zzsff1ml90f0zr868ygvwsr4ps1hq"; depends=[codetools graph XML]; }; - CodelistGenerator = derive2 { name="CodelistGenerator"; version="1.1.0"; sha256="0jsawnghvrddfq0drn3hrbnkm29ylvgp6g397lqs2i4439ad8jqi"; depends=[CDMConnector checkmate DBI dplyr glue magrittr rlang stringr tidyr tidyselect]; }; + CodelistGenerator = derive2 { name="CodelistGenerator"; version="1.2.0"; sha256="0ay52ink9g7gbh1799561giz93ry5nfivpcv8xi6hccswl77smyw"; depends=[CDMConnector checkmate cli DBI dplyr glue magrittr rlang stringr tidyr tidyselect]; }; CohensdpLibrary = derive2 { name="CohensdpLibrary"; version="0.5.8"; sha256="1kvg5wgzgscwqm9hbng92alka2jrar7yfx3s707gj11ck5ldhhmf"; depends=[Rdpack]; }; CohortPlat = derive2 { name="CohortPlat"; version="1.0.5"; sha256="01jvi7k3lvx684c4cwn3xrpwjsksk7gjvs3db64ji7chc4lkajv4"; depends=[doParallel dplyr epitools forcats foreach ggplot2 openxlsx plotly purrr tidyr zoo]; }; Coinprofile = derive2 { name="Coinprofile"; version="0.1.9"; sha256="1bcip62gm34cx5m8a1mx9px2rhgvdmsgnn6q9q40k8p5hw4cx9g0"; depends=[coin exactRankTests ggplot2 plyr Rdpack zoo]; }; @@ -913,6 +925,7 @@ in with self; { CollocInfer = derive2 { name="CollocInfer"; version="1.0.4"; sha256="1iwf5g2y7i0j8dc19hdhya4m6g47jj968glnclj7a2yaq2yx37cj"; depends=[deSolve fda MASS Matrix spam]; }; ColorNameR = derive2 { name="ColorNameR"; version="0.1.0"; sha256="0gqyph3f6mhwg6zwc5bgfglpmg152a4kd2wrmp9jn18wvg8wd03g"; depends=[dplyr magrittr purrr rlang]; }; ComICS = derive2 { name="ComICS"; version="1.0.4"; sha256="0brsb7y1bg23sdpxs4j1y3xdgr1q7iinxnnp17rravw72l991xqa"; depends=[glmnet]; }; + ComRiskModel = derive2 { name="ComRiskModel"; version="0.2.0"; sha256="0jpsmcpi7s0y4dff3k10daimb4gfq7r5sf1w8n51q21zfgf3mn4d"; depends=[AdequacyModel]; }; CombinS = derive2 { name="CombinS"; version="1.1-1"; sha256="06g41zbjl54cbhhs8q7l4bbvszclvbxn3m2dqg800d6ghs9vgl6v"; depends=[]; }; CombinePortfolio = derive2 { name="CombinePortfolio"; version="0.4"; sha256="0kj96i2ahq7ax1nx66jac8bbdiiyviwnzr4cr4gn0b8y580rdcwi"; depends=[]; }; CommEcol = derive2 { name="CommEcol"; version="1.7.1"; sha256="1s6x4mhcx64qdzmp83x3mzmwyj1biawmdj2y752xpm8gpxfjnbc0"; depends=[adespatial ape betapart gmp picante vegan]; }; @@ -927,6 +940,7 @@ in with self; { CompR = derive2 { name="CompR"; version="1.0"; sha256="1k4q0yanvhdh3ksia7d42lxky19yci5vxhmi6h716g9sxzfsjk6b"; depends=[MASS]; }; Compack = derive2 { name="Compack"; version="0.1.0"; sha256="1bl1drbkak7r7scfiij6sf8fjzq01y3p05mjlkknhi9k1l6jq0mi"; depends=[fda MASS orthogonalsplinebasis plyr Rcpp RcppArmadillo]; }; CompareCausalNetworks = derive2 { name="CompareCausalNetworks"; version="0.2.6.2"; sha256="0r8gdr834jqqwiq9h4yz19gcg92rbdd4fr3fwi083vfjml82f0v0"; depends=[data_table expm Matrix]; }; + CompareMultipleModels = derive2 { name="CompareMultipleModels"; version="0.1.0"; sha256="0qzybbxx5kqlrb260c0wh2vhp3ci5wk6853mm01wfyivhvf7sz0h"; depends=[CEEMDANML]; }; CompareTests = derive2 { name="CompareTests"; version="1.2"; sha256="1z96kh851bpr2szgyjszkpv6m5ma6abz7hrm50fgvfpgxkj7f4yi"; depends=[]; }; ComparisonSurv = derive2 { name="ComparisonSurv"; version="1.1.1"; sha256="0lidakxb1ab6bpb7sf2arjl1xpym1lzxbh63g0x4c2dm7h0kzkwi"; depends=[muhaz survival survRM2 TSHRC]; }; Compind = derive2 { name="Compind"; version="2.7.1"; sha256="1429dw025h5fp1wvmyqc5b25wczwf2c44fgp47blzmd3b4qvj6sz"; depends=[Benchmarking boot GPArotation Hmisc lpSolve MASS nonparaeff np psych smaa spdep]; }; @@ -944,6 +958,7 @@ in with self; { CondMVT = derive2 { name="CondMVT"; version="0.1.0"; sha256="010zfd2pdmajbicslz0wamv20gc0im5iwcfpjd14awi2v9pg9vg8"; depends=[mvtnorm]; }; CondiS = derive2 { name="CondiS"; version="0.1.2"; sha256="19l26ajzbi58cnim1kgxb5wrilqpvz6znv01zd42s3w6899km28b"; depends=[caret kernlab purrr survival survminer tidyverse]; }; ConfIntVariance = derive2 { name="ConfIntVariance"; version="1.0.2"; sha256="0xm3vh3vmf16faa3934100rnrg4rvlqkgjlsqa2smzcvy5vb86z4"; depends=[]; }; + ConfZIC = derive2 { name="ConfZIC"; version="1.0.0"; sha256="0q0xhn54rcapi82wngysc6zgkp6jf30b1mbi3hxvahyqd46a1kpc"; depends=[cmna ltsa MuMIn mvtnorm psych tidytable]; }; ConfigParser = derive2 { name="ConfigParser"; version="1.0.0"; sha256="0jjh6gz5qcqhirzkmg7a4lnf8n3mjly15x2mvbvdpjkk7iv3w9m3"; depends=[ini R6]; }; ConformalSmallest = derive2 { name="ConformalSmallest"; version="1.0"; sha256="0r74hbz0dmz69zsw2vdl858vj27p6f2xcpv1l1il4r52cmshg1h8"; depends=[glmnet MASS mvtnorm quantregForest]; }; ConfusionTableR = derive2 { name="ConfusionTableR"; version="1.0.4"; sha256="1qyw4shzgaaqmcn6yb52xaxrfwrji980j87baz4ngzckd60n77fi"; depends=[caret dplyr furrr magrittr purrr tidyr]; }; @@ -955,12 +970,14 @@ in with self; { ConsRankClass = derive2 { name="ConsRankClass"; version="1.0.1"; sha256="02n6a3affm72vfhsjz90jl8x0qrvxsimlm1ng313s4zla515h8ap"; depends=[ConsRank janitor pracma proxy rlist]; }; ConsReg = derive2 { name="ConsReg"; version="0.1.0"; sha256="0ck188ahzprzvqdh2q05bcg9b68dw3xiqqb1xirbm4rp5chyr419"; depends=[adaptMCMC data_table DEoptim dfoptim FME forecast GA GenSA ggplot2 MCMCpack Metrics nloptr Rcpp rlang Rsolnp]; }; ContRespPP = derive2 { name="ContRespPP"; version="0.4.2"; sha256="1pp5j1bwrdf5sgvrqr1xcr7asinpp4mqdx358q6v2f8096lwgd9b"; depends=[]; }; - ContaminatedMixt = derive2 { name="ContaminatedMixt"; version="1.3.7"; sha256="0shv6237yq4xqi78cz955bv2xjvq3f5z577nd1v55wfya7f3n50v"; depends=[caret mclust mixture mnormt mvtnorm]; }; + ContaminatedMixt = derive2 { name="ContaminatedMixt"; version="1.3.8"; sha256="1kn1cri5wl3fwkd435sm18ipkkgxccn0q48m1wj3amw4vhg91wag"; depends=[caret mclust mixture mnormt mvtnorm]; }; ContourFunctions = derive2 { name="ContourFunctions"; version="0.1.1"; sha256="00p5bdiq8hj95lkr86iwyh50qw0d0d4gs9hhbzcix6lwn8dwqd3s"; depends=[]; }; ConvergenceClubs = derive2 { name="ConvergenceClubs"; version="2.2.4"; sha256="1kzkipaxjpr2x0hynbzh46rgq3vw8szf5sgr8vaqgg429pxf2dkn"; depends=[lmtest sandwich]; }; ConvergenceConcepts = derive2 { name="ConvergenceConcepts"; version="1.2.3"; sha256="1y4kh00z63a9j8bsjgnf6lmwkivsf5zk8yw6i9d72a8jr2bhb78w"; depends=[lattice tkrplot]; }; ConvertPar = derive2 { name="ConvertPar"; version="0.1"; sha256="1czw97ya73dinad0n664045s9918a21kv97bpkal40kg029vnw59"; depends=[mirt neuralnet RWeka]; }; Convolutioner = derive2 { name="Convolutioner"; version="0.1.0"; sha256="1ria4ii7zdqgrzgdx4c82dj4lg791iwy2y66fv1qyibws0ag3bhq"; depends=[]; }; + CooRTweet = derive2 { name="CooRTweet"; version="1.3"; sha256="1svi2a18z6vgd30kx47pdfk4q08isgxa1pchlhmcff8qx969048h"; depends=[data_table igraph lubridate Matrix RcppSimdJson stringi tidytable]; }; + CooccurrenceAffinity = derive2 { name="CooccurrenceAffinity"; version="1.0"; sha256="0wn8jkvm5x30vj1vy196l691kbs5aa3j09s5dsa2r54cr34d16mn"; depends=[BiasedUrn cowplot ggplot2 plyr reshape]; }; CoopGame = derive2 { name="CoopGame"; version="0.2.2"; sha256="0i4yw2nznmcps9s9f592nbs8dvncb0w2bynvsfkp21lzd4pfsp4n"; depends=[geometry gtools rcdd]; }; CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="2.0-20"; sha256="1n1k97imcg3n8nvl9759nqbzirxs011micx4qj2sf1d0bvnlrzs1"; depends=[dplyr geosphere ggplot2 raster rgbif rgdal rgeos rnaturalearth sp tidyselect]; }; CopCTS = derive2 { name="CopCTS"; version="1.0.0"; sha256="1j0bhkjk181y9k69442diswgwax5whmh5vfqydhf3b1r5ll1wkm3"; depends=[copBasic copula msm]; }; @@ -972,6 +989,8 @@ in with self; { Copula_surv = derive2 { name="Copula.surv"; version="1.2"; sha256="1sashpxwbw0a5q8qvs8pwgxk0h5d3njw7j4gqrc8fh7bx71bqq7l"; depends=[]; }; CopulaCenR = derive2 { name="CopulaCenR"; version="1.2.2"; sha256="1fk91adsahim1a6idpp4kpd2i607gh88j0xfgjnsdk94vlgx6wbs"; depends=[boot caret copBasic copula corpcor flexsurv icenReg magrittr plotly pracma survival VineCopula]; }; CopulaDTA = derive2 { name="CopulaDTA"; version="1.0.1"; sha256="1a9v398yn7gflpnsrgzap8gy1b676ri1m3fwiv1jpc5l1cw154pm"; depends=[ggplot2 plyr reshape2 rstan]; }; + CopulaGAMM = derive2 { name="CopulaGAMM"; version="0.2.0"; sha256="1ff21dn4mrrzj3skwjw2khlay10y45v3xs1mjcqry1mxrv99bd1g"; depends=[matrixStats statmod]; }; + CopulaInference = derive2 { name="CopulaInference"; version="0.5.0"; sha256="10r2ni62fh6zl0im1n7apjf6kx2fprifn71rnaf7dh7xypdkqyw1"; depends=[doParallel foreach Matrix rvinecopulib]; }; CopulaREMADA = derive2 { name="CopulaREMADA"; version="1.5.1"; sha256="027007xrzd2m7pgv8ki901aaf2957ih1lqh881viyd8hbfcfaghy"; depends=[matlab mc2d statmod tensor]; }; CorBin = derive2 { name="CorBin"; version="1.0.0"; sha256="0mjvhj9cw21xjg96fz5bcyfxgwdw367l1942a38by77ylypdfq3y"; depends=[]; }; CorMID = derive2 { name="CorMID"; version="0.1.7"; sha256="1i51zn8m2lpdv3dqq4cqyvyzqv9wf1flw7g83j8dj8r6nlasfva5"; depends=[plyr Rdisop]; }; @@ -1004,21 +1023,23 @@ in with self; { CpmERCCutoff = derive2 { name="CpmERCCutoff"; version="1.0.0"; sha256="1vmfhdi4mmfbw5zz5yhsqrqz7w5jpg0ls6d22mm8bplgssrc2kk9"; depends=[]; }; Cronbach = derive2 { name="Cronbach"; version="0.1"; sha256="1gkapi7pgf1mwidhgdf3y5cm4bz5igzb7mdflz560aa67asp1qyf"; depends=[boot]; }; CropScapeR = derive2 { name="CropScapeR"; version="1.1.5"; sha256="0dhziq4fybb987jv10g0wd4n765c4d87h86g96qg8wg6cx11vi6m"; depends=[data_table dplyr httr magrittr raster RJSONIO sf]; }; + CrossCarry = derive2 { name="CrossCarry"; version="0.1.0"; sha256="1iglwsx5b29zjl7ikngyb3kf0kfacqxlg01p6vn84dblwgh2gmak"; depends=[dplyr gee geepack ggplot2]; }; CrossVA = derive2 { name="CrossVA"; version="1.0.0"; sha256="16ahw8h27acvqqixmwmsyl6rbjzxbn4pfyh2ls9rq852mc7mdg9b"; depends=[stringi]; }; CrossValidate = derive2 { name="CrossValidate"; version="2.3.4"; sha256="1q5wnw2llvlw3hbjg0zccipk3ns31m2339x1aj6m526zhvgl2wvx"; depends=[Modeler oompaBase]; }; Crossover = derive2 { name="Crossover"; version="0.1-21"; sha256="0mqpfasqdgv4s77ln3c45pjgl2l7wb7b68jl46fzln184n0838l7"; depends=[CommonJavaJars crossdes digest ggplot2 JavaGD MASS Matrix multcomp Rcpp RcppArmadillo rJava xtable]; }; Crosstabs_Loglinear = derive2 { name="Crosstabs.Loglinear"; version="0.1.1"; sha256="0238652k1mv396wjxm058xvhp7rss0nkmn48bvkhq6pcryna2lzb"; depends=[]; }; CruzPlot = derive2 { name="CruzPlot"; version="1.4.8"; sha256="19dza13mdd67g7710bzzg1bi32nhgr3c5vcyh98igw3q8hfk7ac8"; depends=[dplyr DT geosphere mapdata maps marmap shiny shinydashboard shinyjs stringr swfscDAS]; }; CryptRndTest = derive2 { name="CryptRndTest"; version="1.2.7"; sha256="0skk0mgnkfknlbdidfh2jca1wa8rzgd29ypwpa8kdh83l9jhdi5g"; depends=[gmp kSamples LambertW Rmpfr sfsmisc tseries]; }; - CsChange = derive2 { name="CsChange"; version="0.1.6"; sha256="0ahgzir1rz5hh2jkgabp9vccg527vbvmkdyxf9lyz5yxkig3jv2s"; depends=[boot Hmisc rms survival]; }; + CsChange = derive2 { name="CsChange"; version="0.1.7"; sha256="1qggfi7g34iw0737azn4l9cn0chsiq4wa18v8i5znlaimzmifylr"; depends=[boot Hmisc rms survival]; }; Cubist = derive2 { name="Cubist"; version="0.4.2.1"; sha256="0mwis0qjjj7wz4lxb8a0168l4az4523ybhxc0jygx8qrj3azwyph"; depends=[lattice reshape2]; }; CustomerScoringMetrics = derive2 { name="CustomerScoringMetrics"; version="1.0.0"; sha256="166v0hbxy4xgbfqh7sx6zsrv4pghqpimx5xry3h2qwynnvr4ng1a"; depends=[]; }; CustosAscensor = derive2 { name="CustosAscensor"; version="0.1.0"; sha256="1axyhwf9rc9dvrrcrpmx69kp49nwb0an7csn9qbjmx9jwwav11l5"; depends=[]; }; CutpointsOEHR = derive2 { name="CutpointsOEHR"; version="0.1.2"; sha256="0r772zb7g10akcfnf2hnyvpvba4px9pgslyns7drmijdsh0ncnvj"; depends=[survival]; }; - Cyclops = derive2 { name="Cyclops"; version="3.3.0"; sha256="0q0n1ggv6skbb4ld55idayb6xnnwcni44br69svsd62a3yqqsj2m"; depends=[Andromeda BH bit64 dplyr Matrix Rcpp RcppEigen rlang survival]; }; + Cyclops = derive2 { name="Cyclops"; version="3.3.1"; sha256="17njl7vz9gkwfnxhs95vqn1mfcklmdqg5wwsgjbm3px120b7c8mf"; depends=[Andromeda BH bit64 dplyr Matrix Rcpp RcppEigen rlang survival]; }; CytOpT = derive2 { name="CytOpT"; version="0.9.4"; sha256="008qm2kzclp0sy4ys7y0dsc894qrn7mazz9216w97rs2sn7kcrzx"; depends=[ggplot2 MetBrewer patchwork reshape2 reticulate testthat]; }; - CytobankAPI = derive2 { name="CytobankAPI"; version="2.2.0"; sha256="0wzsrwc7a7zhpjgxc2ymr258zv9h7nwpyj83p6j8mrqzvkfvrqq8"; depends=[aws_s3 curl httr jose jsonlite uuid]; }; + CytobankAPI = derive2 { name="CytobankAPI"; version="2.2.1"; sha256="0zhvxgqlzwv98b6ccl33x6jp71a14ysdmcc5a3v0d97r8haq1g3v"; depends=[aws_s3 curl httr jose jsonlite uuid]; }; D2MCS = derive2 { name="D2MCS"; version="1.0.1"; sha256="0rjfjnh8gcbm83cwqk1yjrjv6jsrarr53c629bkg9zw7s5sm35nz"; depends=[caret devtools dplyr FSelector ggplot2 ggrepel gridExtra infotheo mccr mltools ModelMetrics questionr R6 recipes tictoc varhandle]; }; + D3mirt = derive2 { name="D3mirt"; version="1.0.3"; sha256="0959gfhpj1jxnkbafwkzqp08xygnjv6xqhhm3s7yhcfb1qfdfbsn"; depends=[mirt rgl]; }; D3partitionR = derive2 { name="D3partitionR"; version="0.5.0"; sha256="10067rdgbpjzgw2wiq75kdd0gd7bl41hp16sxc0k2p72ybqfpw03"; depends=[data_table functional htmlwidgets magrittr RColorBrewer titanic]; }; D4TAlink_light = derive2 { name="D4TAlink.light"; version="2.1.11"; sha256="0app56g8kws30q9a91ipcxmgnfihcx1q6678s4hfxc1w3dq2pq82"; depends=[jsonlite openssl rmarkdown]; }; DA = derive2 { name="DA"; version="1.2.0"; sha256="0bcx6lh93yl1cawrbrkqx7dypypvfnf27nlxf9vkz16n1hy50xnl"; depends=[adegenet kernlab klaR lfda MASS plotly rARPACK]; }; @@ -1027,9 +1048,10 @@ in with self; { DACF = derive2 { name="DACF"; version="1.0.0"; sha256="0hv7c9lk6ivj4iz953yn11iy5p611q4si4ghn9d5a9i229s5hig8"; depends=[]; }; DAIME = derive2 { name="DAIME"; version="2.1.3"; sha256="099pbzgryz9lxhcqlrywcv8zl5af4ir5dyyqvgc16xi5bddxk7ld"; depends=[]; }; DAISIE = derive2 { name="DAISIE"; version="4.4.0"; sha256="0f9b361l591b5454lmzbhihv1wmk9rwbb90csax4xwrg9yq26i3v"; depends=[BH DDD deSolve doParallel foreach magrittr Matrix pracma Rcpp RcppEigen subplex tensor testit]; }; + DAISIEprep = derive2 { name="DAISIEprep"; version="0.3.2"; sha256="1072j28rwkzki8slz4h8db0wkzbcprbrmm7c33jy19s3qk5h644a"; depends=[ape castor DAISIE ggplot2 ggtree phylobase rlang scales tibble]; }; DAKS = derive2 { name="DAKS"; version="2.1-3"; sha256="0vmpwxvksnmyq40faimbgpj0y3zbk519986n38ipwdfzllcg0zs4"; depends=[relations sets]; }; DALEX = derive2 { name="DALEX"; version="2.4.3"; sha256="08cd5nhgd6vaazcqq985kwivg99v6ily4idhgkpz8l9ffl3lavm0"; depends=[ggplot2 iBreakDown ingredients]; }; - DALEXtra = derive2 { name="DALEXtra"; version="2.2.1"; sha256="0dlhchx9yk5frqbvdqaajs88k3hz6k3h40arfyyndgrcaqmcmn2a"; depends=[DALEX ggplot2 reticulate]; }; + DALEXtra = derive2 { name="DALEXtra"; version="2.3.0"; sha256="1yxsk6cmqrhc7aw62vx5pr2g18lh32j5x73jbfxv4k0ia66mmwqf"; depends=[DALEX ggplot2]; }; DALY = derive2 { name="DALY"; version="1.5.0"; sha256="1v7ld01xcn5jiygl1c3xhd5h71ip90lks87fs9gmpnivp8jz5cr5"; depends=[]; }; DAMOCLES = derive2 { name="DAMOCLES"; version="2.3"; sha256="0pk9gq82qa18fl7zp74d47bgy8lhj9rkvfq23w8844nz9kn58s1f"; depends=[ape caper DDD deSolve expm Hmisc Matrix matrixStats picante]; }; DAP = derive2 { name="DAP"; version="1.0"; sha256="0zzb05yxfaqp6qnr979q20rqy8sl5l825mxs0x9366qr7mz5k5ws"; depends=[MASS]; }; @@ -1039,7 +1061,6 @@ in with self; { DBEST = derive2 { name="DBEST"; version="1.8"; sha256="1a598g02hpfgv572gchllqkppynnsp4lx764jg0g66w3b66k0kdy"; depends=[zoo]; }; DBHC = derive2 { name="DBHC"; version="0.0.3"; sha256="0r9c2vjnrahi3kbg7gz3z9k1i8vdqc44rc6nq7xk1j2xs1s6wsxp"; depends=[ggplot2 reshape2 seqHMM TraMineR]; }; DBI = derive2 { name="DBI"; version="1.1.3"; sha256="13a2656w5j9shpcwa7gj2szy7nk9sajjhlisi5wdpgd57msk7frq"; depends=[]; }; - DBIsqldf = derive2 { name="DBIsqldf"; version="0.9.9-2"; sha256="1yp9xqrf6dbq9478w0bd55rzhqf78anwrqzlkphbl7fk2d2ipy6i"; depends=[DBI]; }; DBItest = derive2 { name="DBItest"; version="1.7.3"; sha256="0749mg3yadbxyixpsicnyi10dmwdjr1f590gfdzfrnpyg1ih5drh"; depends=[blob callr DBI desc hms lubridate palmerpenguins R6 rlang testthat vctrs withr]; }; DBNMFrank = derive2 { name="DBNMFrank"; version="0.1.0"; sha256="1snnyc9dvlkxydx3n6mims1avbibkkmaf5z440s28ibf9a9l91wj"; depends=[NMF pmledecon]; }; DBR = derive2 { name="DBR"; version="1.4.1"; sha256="1gs9d1qmv4mcmryzzvmwbz6ycinhnxnkiv56l31mbqy50qjn9bi4"; depends=[coda MfUSampler]; }; @@ -1047,7 +1068,6 @@ in with self; { DBpower = derive2 { name="DBpower"; version="0.1.0"; sha256="04wwhzlc9g6il478ax5yvh74bbb6hs29jyslkiz3k1hi25hlpkrn"; depends=[combinat dplyr GBJ kit magrittr mvtnorm]; }; DCA = derive2 { name="DCA"; version="2.0"; sha256="1acy33vyf814kr0aj6kdvi9f1qzgynwwzv57ll01gd0iqq36374f"; depends=[coin elasticnet GPArotation locfdr modeest mvtnorm PMA]; }; DCCA = derive2 { name="DCCA"; version="0.1.1"; sha256="06xdx79r7dr14dlk5vgcyd8ar4sc72imlyk66bnia1kvlynvdy69"; depends=[checkmate]; }; - DCD = derive2 { name="DCD"; version="0.1.0"; sha256="0p6vk8fdvpcvb1bb5fwy3h1v8y3djlvcm5jl5lnx30ngqj6d7rcj"; depends=[data_table doParallel foreach ggplot2 igraph lattice lsa Matrix plyr qlcMatrix Rdpack ROCR WGCNA]; }; DCEM = derive2 { name="DCEM"; version="2.0.5"; sha256="04z0lya1dbkdzjbgn8g6p16969kc6s4zrk87wy0i42h2hx0yx1zv"; depends=[MASS matrixcalc mvtnorm Rcpp]; }; DCEmgmt = derive2 { name="DCEmgmt"; version="0.0.1"; sha256="1vv212baycn0xkk2caj1f00ps1512261h21akmyqjhij3q4lxikx"; depends=[mlogit survival]; }; DCEtool = derive2 { name="DCEtool"; version="1.0.0"; sha256="0l6m0dpr83fi22sp8vwc7jxw598j91jhz55s51ihii0wfiwk26ym"; depends=[adjustedcranlogs bslib dfidx DT fastDummies ggplot2 htmltools idefix knitr magrittr matrixStats mlogit mvtnorm readxl remotes rlist rmarkdown shiny shinyBS shinycssloaders shinythemes shinyWidgets stringi survival tibble tidyr tidyverse writexl]; }; @@ -1063,24 +1083,24 @@ in with self; { DClusterm = derive2 { name="DClusterm"; version="1.0-1"; sha256="04i9fyph2k3ffds0nv49371p8lw6dkzcf27pc98f99x0l6c8k5iq"; depends=[DCluster lme4 sp spacetime xts]; }; DDD = derive2 { name="DDD"; version="5.2.1"; sha256="0ri1q79ngfqravgr89c5lfkd769q11m8p96shfrl175vg6r4f060"; depends=[ape BH DEoptim deSolve expm Matrix phytools Rcpp RcppEigen SparseM subplex]; }; DDHFm = derive2 { name="DDHFm"; version="1.1.3"; sha256="1xkjbhqipz6kqd6kw9682q5sbrvbpq4jn8nms3cv63b8x9nl1k55"; depends=[lokern wavethresh]; }; - DDIwR = derive2 { name="DDIwR"; version="0.13"; sha256="0vczy1614k31s3skblzznpagwyf9qr3wdfrwvxdvck1c4albkmrp"; depends=[admisc declared haven readxl writexl xml2]; }; - DDL = derive2 { name="DDL"; version="1.0.1"; sha256="176hvm3gl6dv9na3jjkqb27b8n4fwxsg8cazwkabv9jn12w4a93p"; depends=[glmnet Matrix]; }; + DDIwR = derive2 { name="DDIwR"; version="0.14"; sha256="0jv569743lpjjjg8qbmnib86i47bfn9qjpcjhrbx9j6zz3llk1y3"; depends=[admisc declared haven readxl writexl xml2]; }; + DDL = derive2 { name="DDL"; version="1.0.2"; sha256="1scgg90njn8ahxdzbz1dyhr508hlipgaawk2pll0hk093abnqrlc"; depends=[glmnet Matrix]; }; DDM = derive2 { name="DDM"; version="1.0-0"; sha256="19g06qk3lzasj294x9wfij729mlq6ryvjqkn3rgl5xp1w0gx9wi2"; depends=[]; }; DDPNA = derive2 { name="DDPNA"; version="0.3.1"; sha256="1z9s0b7cc0sf1hilvn1g1vwblqhnif8bqdc8m5zhaanw7s0yfgcy"; depends=[ggalt ggplot2 Hmisc igraph MEGENA plyr scales VennDiagram]; }; DDRTree = derive2 { name="DDRTree"; version="0.1.5"; sha256="16s5fjw7kwlxhrkzdny62sx32fvmg3rxjc3wrh6krd31jh1fqlfk"; depends=[BH irlba Rcpp RcppEigen]; }; DDoutlier = derive2 { name="DDoutlier"; version="0.1.0"; sha256="1az5zq0l3kj959572mlpc4zl73f16iag0yrs217fa9m8xpd3c2sd"; depends=[dbscan pracma proxy]; }; DEBBI = derive2 { name="DEBBI"; version="0.1.0"; sha256="09bsq5m33yj3ik3irj2ifjkylg259imrz499qp5j4ggcqgvk6v88"; depends=[doParallel numDeriv randtoolbox]; }; DECIDE = derive2 { name="DECIDE"; version="1.3"; sha256="04hqr3r2ys6xni3a2mr2j45415wm3iix38xfxccrnx2wjk5w3b5b"; depends=[]; }; - DEET = derive2 { name="DEET"; version="1.0.8"; sha256="1kbl329hks3i5sf89rg54l24dw1alxnvv3y9l65z6yfzs2kn3gjn"; depends=[ActivePathways downloader dplyr ggplot2 ggrepel glmnet pbapply]; }; + DEET = derive2 { name="DEET"; version="1.0.10"; sha256="06i8grq4zkh8qcw6q4vvnxnlvm4ya6rclyaaw5xn1h833p5218xs"; depends=[ActivePathways downloader dplyr ggplot2 ggrepel glmnet pbapply]; }; DEEVD = derive2 { name="DEEVD"; version="1.2.3"; sha256="1wa3h0z5sk8zrwblzb8w7hgj9yqw56vqi3vsnpva53qynf42r2n7"; depends=[evd]; }; DEGRE = derive2 { name="DEGRE"; version="0.2.0"; sha256="040hfpvqwl8r0iazwpnq7fmkydsxqc7mck7wbjqf6c19cw3zziz7"; depends=[car dplyr foreach ggplot2 ggpubr ggrepel glmmTMB parglm tibble]; }; DELTD = derive2 { name="DELTD"; version="2.6.8"; sha256="0s5qiy2cb6fcm9fnbzmqs2x39im5r1vb45avh9isc71f7xl3my36"; depends=[]; }; DEM = derive2 { name="DEM"; version="0.0.0.2"; sha256="17ibq5cavzkl2vfrmrkz77m28l4xpj97skad5pfvk1nhzyrg2k1l"; depends=[mvtnorm]; }; DEMOVA = derive2 { name="DEMOVA"; version="1.0"; sha256="09dqhhhihphhdnplmhdq4q5zwc0qvqhirdrxa9x6fr43vwa5zfp4"; depends=[leaps]; }; - DEPONS2R = derive2 { name="DEPONS2R"; version="1.1.9"; sha256="10aldyl0qzmw8zxfv5p8h7jryhncqyy64y1n8h1pxry405mxadc0"; depends=[jsonlite raster sf sp terra xml2]; }; + DEPONS2R = derive2 { name="DEPONS2R"; version="1.2.1"; sha256="09rd7bd855s7bs4fasdzc15fxi6191gfpjifqqyia0j857nr5n14"; depends=[jsonlite raster sf sp terra xml2]; }; DES = derive2 { name="DES"; version="1.0.0"; sha256="16p38i8ykwc8gjw6c9dhdwjjpa1b17n9wqhz3rhkbzjh978pky31"; depends=[]; }; DEoptim = derive2 { name="DEoptim"; version="2.2-8"; sha256="0k7mvf7j8y1sqv8zpiwkw4xcmgki37drkxjijrsmmhkfybfan7k3"; depends=[]; }; - DEoptimR = derive2 { name="DEoptimR"; version="1.0-11"; sha256="0nqn12n5qlyk2zsgh57dvizy5z71xgqrhrcqj6lbzybm9c7v6x0q"; depends=[]; }; + DEoptimR = derive2 { name="DEoptimR"; version="1.0-13"; sha256="1wpqg659vpcd6cgy4sa9qygf0s0w44n46yma8990awkgnbxjmfxa"; depends=[]; }; DFA = derive2 { name="DFA"; version="0.9.0"; sha256="0nk8k6xxqbbk1zhq3xsm59azvkj9499vp92pjl9xygasarim90rl"; depends=[]; }; DFA_CANCOR = derive2 { name="DFA.CANCOR"; version="0.2.7"; sha256="0d1dsl79wxsma3zvb2wxii6hr27v9sah4bjfcxsbyhlfyb6q3wy6"; depends=[BayesFactor MVN]; }; DFIT = derive2 { name="DFIT"; version="1.1"; sha256="1220ax93b9xwmq1crgl1fnf63gk72jqbra5b5q25wn6ynv1kilkx"; depends=[ggplot2 mirt msm mvtnorm simex]; }; @@ -1093,7 +1113,6 @@ in with self; { DHBins = derive2 { name="DHBins"; version="1.1"; sha256="1g69acac7pxw8x0d9czyds7xljhbv9d686c99a3y8b4vh7dnx62s"; depends=[ggplot2]; }; DHS_rates = derive2 { name="DHS.rates"; version="0.9.1"; sha256="1mbp38kbs22wr1aq1gs2m7xcsk3gadik7yxlandhvhnrnacc4pd7"; depends=[crayon dplyr haven matrixStats reshape rlang survey]; }; DICOMread = derive2 { name="DICOMread"; version="0.0.0.3"; sha256="1wrgx5b9w476g8s3jmccc027xdqbmcmnlhwf02g6j213rgy87p73"; depends=[matlabr]; }; - DIDmultiplegt = derive2 { name="DIDmultiplegt"; version="0.1.0"; sha256="1jzc2ixb92mxlm39xf3rmab9c8959xylnxacr4xqjnhi9hlkq30n"; depends=[assertthat dplyr fixest plotrix sampling stringr]; }; DIFboost = derive2 { name="DIFboost"; version="0.3"; sha256="07x31ccy2l0drv1356g1v4jw71i7zqb3d0v856gsd3kpqhclpvx0"; depends=[mboost penalized stabs]; }; DIFlasso = derive2 { name="DIFlasso"; version="1.0-4"; sha256="13ls5018l790cdr26431li4gi9zw03ilypszfqglg4hj485h7dyw"; depends=[grplasso miscTools penalized]; }; DIFplus = derive2 { name="DIFplus"; version="1.1"; sha256="1k03lr437gx5y762z3h40hz9kcl4m8xgrndxvbyvsgmn2h6pbwsd"; depends=[plyr TestDataImputation]; }; @@ -1101,13 +1120,13 @@ in with self; { DIFtree = derive2 { name="DIFtree"; version="3.1.6"; sha256="1ps3nb1a5dgxs187bcjsys4fpi0z4z6d84qlxg8rf1rvcfgg21r5"; depends=[gridBase penalized plotrix VGAM]; }; DIGSS = derive2 { name="DIGSS"; version="1.0.2"; sha256="1bbwkq40gdan1zwq3cwn96k0k045x67l11rhm3q4dppw50736fpk"; depends=[ggplot2 viridis]; }; DIME = derive2 { name="DIME"; version="1.3.0"; sha256="1kbs5s3pgjlqiikcd54v9ym9yw40q6x1bgl7k0570l7i3mvcfvsj"; depends=[]; }; - DIMORA = derive2 { name="DIMORA"; version="0.3.4"; sha256="045ngll2apr75skjwfrl6ypbihw0f4z6cf9awdhhbvm7bzld8jbj"; depends=[deSolve forecast minpack_lm numDeriv reshape2]; }; + DIMORA = derive2 { name="DIMORA"; version="0.3.5"; sha256="0x289f8yppvl90c8j8w96m5bgb8khxnc8agxn77wkfisx4cczy1k"; depends=[deSolve forecast minpack_lm numDeriv reshape2]; }; DIRECT = derive2 { name="DIRECT"; version="1.0.1"; sha256="00z4xlc9kxn19lw2b8xq6krsf5v3wfbr1ghl5ah5shr9dnv84lc1"; depends=[]; }; DISTRIB = derive2 { name="DISTRIB"; version="1.0"; sha256="0whwmmdx2k2vrjjkz4ww9v7z9ad3835819pby91119lyic27w727"; depends=[]; }; DIZtools = derive2 { name="DIZtools"; version="0.0.8"; sha256="0cjfyq83vqc9b0q0w2iifdqvcpjgapicj5bc4b0pj8nh8fwgwrga"; depends=[cleaR config data_table logger magrittr parsedate R_utils]; }; DIZutils = derive2 { name="DIZutils"; version="0.1.2"; sha256="1kra2b1qbbs6yf5aqlianszqbybni4iqzks0gxg5hdmdzphzb0hb"; depends=[data_table DBI DIZtools Hmisc psych RJDBC RJSONIO RPostgres xml2]; }; DIconvex = derive2 { name="DIconvex"; version="1.0.0"; sha256="0bnrq9nmryshir6ll43nz20aaqmmw0zjvfml72cpwbvrma8a3qmz"; depends=[lpSolveAPI]; }; - DImodels = derive2 { name="DImodels"; version="1.2"; sha256="0fylyadx7dph8iv5q25s86laxgwlsi399fj9l36g9dm3ngsffbsf"; depends=[hnp multcomp rootSolve]; }; + DImodels = derive2 { name="DImodels"; version="1.2.1"; sha256="0w5kjmfiz3idvxrpsfazq4zqzh3sdrz928g2a5r754dk5bx0nai8"; depends=[hnp multcomp rootSolve]; }; DIscBIO = derive2 { name="DIscBIO"; version="1.2.0"; sha256="1m1c9ivblk3sir6lfq0msx2vlrx37dd5v7y6003k6fmsgrfpi9fs"; depends=[AnnotationDbi boot cluster fpc ggplot2 httr igraph impute mclust NetIndices org_Hs_eg_db philentropy png RColorBrewer rpart rpart_plot RWeka SingleCellExperiment statmod TSCAN tsne]; }; DJL = derive2 { name="DJL"; version="3.9"; sha256="0q82b35ln0ligxgnk726bn5cynh6sd529hk6v3prrzbvdnsrqxcg"; depends=[car lpSolveAPI]; }; DLASSO = derive2 { name="DLASSO"; version="2.0.2"; sha256="0xdygf6h89d9z4kqb46iqfxgdzq9dmkrxf9ypw78l4d8n9xx2gaa"; depends=[MASS]; }; @@ -1117,7 +1136,7 @@ in with self; { DLSSM = derive2 { name="DLSSM"; version="0.1.0"; sha256="0ca9z48kfzximk6b49mqcfw50av9zh3jf9frjjsc8xwyyc6fq381"; depends=[Matrix]; }; DMCfun = derive2 { name="DMCfun"; version="2.0.2"; sha256="1phzi3an03akf04q1j6s1dmqmfzg1r52ga7685wimcbxy4cbq323"; depends=[BH DEoptim dplyr pbapply Rcpp shiny tidyr]; }; DMLLZU = derive2 { name="DMLLZU"; version="0.1.1"; sha256="0ck87abcd5gkq69q1g5g0yshfhx94m3vgayvxgzgnkidn9mivx22"; depends=[caret gbm ISLR lmtest nnet randomForest rlang sandwich]; }; - DMMF = derive2 { name="DMMF"; version="0.5.1.2"; sha256="0p82cfp0561j4ki20rznx46z7vqdxh128a0m0zj8d2wp3csn1aag"; depends=[raster rgdal sp]; }; + DMMF = derive2 { name="DMMF"; version="0.5.2.0"; sha256="0bda65253q45m9bj923zylafnlwnxwyyk730pjqynz11z8vyibj6"; depends=[raster]; }; DMRMark = derive2 { name="DMRMark"; version="1.1.1"; sha256="15wr6j0v9kvbv8y6flkp4svfqy059ziv89nxv91vp0pjmavhpdlz"; depends=[ellipse MCMCpack mvtnorm]; }; DMRnet = derive2 { name="DMRnet"; version="0.3.4"; sha256="030ya23r9cg9adlh03qi8ychcwbvnxr42dvkvrzw6wz85dsc0vrv"; depends=[glmnet grpreg]; }; DMTL = derive2 { name="DMTL"; version="0.1.2"; sha256="0z6l1sylw4ib1mgqjnrmxh2q56vazg2i7xxiw1g4gm28iq44r2n0"; depends=[caret glmnet kernlab ks randomForest]; }; @@ -1141,15 +1160,15 @@ in with self; { DOvalidation = derive2 { name="DOvalidation"; version="1.1.0"; sha256="1mzws3w7djpxnfqxjcqwgia7p17kb0qlnzj6qcfg2m1vamb1cn2z"; depends=[]; }; DPBBM = derive2 { name="DPBBM"; version="0.2.5"; sha256="1qypxrcm3sb727lqb09ssjf3hblixqayw3qsyql01imrxwm609i2"; depends=[CEoptim gplots tmvtnorm VGAM]; }; DPP = derive2 { name="DPP"; version="0.1.2"; sha256="1qalcm4gwh03qpy07d0p323ccq8xmk04v6z30g7wg6ic613bqg7m"; depends=[coda Rcpp]; }; - DPQ = derive2 { name="DPQ"; version="0.5-3"; sha256="1jhvbyciqpbxsyi4zgn827nr3fywjc5q3ynji4i8x39i3lbwarw5"; depends=[sfsmisc]; }; + DPQ = derive2 { name="DPQ"; version="0.5-4"; sha256="06pkhzypm5y4k989y4k9fn4kyspjyxmakn22kklnbjqjcmz2fkxa"; depends=[sfsmisc]; }; DPQmpfr = derive2 { name="DPQmpfr"; version="0.3-1"; sha256="0f3l6dhiqnlix5vdz65pnxic43hcd4xiz64sh3cp8xs8cbmlnqcw"; depends=[DPQ gmp Rmpfr]; }; - DPpack = derive2 { name="DPpack"; version="0.0.11"; sha256="1i2ic9w42pc1a5aqsy972rdk297q98vkqypj2vaxx0pav4m3l6lh"; depends=[dplyr e1071 ggplot2 MASS nloptr R6 Rdpack rmutil]; }; + DPpack = derive2 { name="DPpack"; version="0.1.0"; sha256="1kip6n4pxpk5byjdn5m6l8s5l49dvkh78wn6n85dri0c2snkvs17"; depends=[dplyr e1071 ggplot2 MASS nloptr R6 Rdpack rmutil]; }; DPtree = derive2 { name="DPtree"; version="1.0.1"; sha256="0d7zf695lwkx4gv50f08cbi3p3mjjay0qgrbmvybf9m15i4zmyd7"; depends=[MASS MCMCpack plyr Rdpack]; }; DQAgui = derive2 { name="DQAgui"; version="0.2.2"; sha256="1zscs93ax7s25f3vpqr75q28v06h449pydkqwgfygn3sn02n82nh"; depends=[data_table daterangepicker DIZtools DIZutils DQAstats DT jsonlite knitr lubridate magrittr parsedate shiny shinyalert shinydashboard shinyFiles shinyjs shinyWidgets waiter]; }; DQAstats = derive2 { name="DQAstats"; version="0.3.2"; sha256="1fcfggzk5ln3md540dnc77jwsc9p5bswl6nbci6gihl4jc5d9fn8"; depends=[data_table DIZtools DIZutils future future_apply jsonlite kableExtra knitr magrittr parsedate rmarkdown tinytex]; }; - DR_SC = derive2 { name="DR.SC"; version="3.1"; sha256="19yl47bi1mpgq7ppviazq0hl0d0yi3mrk1qkdpcbic6dwv2d04k0"; depends=[CompQuadForm cowplot ggplot2 GiRaF irlba MASS Matrix mclust purrr RColorBrewer Rcpp RcppArmadillo S4Vectors Seurat spatstat_geom]; }; + DR_SC = derive2 { name="DR.SC"; version="3.2"; sha256="0glf17ddq2h4wvzbwcdaw3a0whf7j4r5srmda05lx3bqrgaarwkr"; depends=[CompQuadForm cowplot ggplot2 GiRaF irlba MASS Matrix mclust purrr RColorBrewer Rcpp RcppArmadillo S4Vectors Seurat spatstat_geom]; }; DRAYL = derive2 { name="DRAYL"; version="1.0"; sha256="0cf5pyx6nwh8srdylpnmymv3dr67fm6qqpwd1hvj1wmyfc8fznpp"; depends=[cubature pracma RConics rmutil]; }; - DRDID = derive2 { name="DRDID"; version="1.0.4"; sha256="09dpl6fcl557vwhcr4zs5fdyfdd65jzj3hznkf1g138szpzqnphf"; depends=[BMisc trust]; }; + DRDID = derive2 { name="DRDID"; version="1.0.6"; sha256="1grhnk0b6v5c31497mfr9b4n2fn3flkw40r3lznhxgn2psphpjz7"; depends=[BMisc trust]; }; DRDRtest = derive2 { name="DRDRtest"; version="0.1"; sha256="1vrvwr441w526a80s0r2fwqlllvn05ir8v2152jz2wxrwhnpq1s0"; depends=[KernSmooth SuperLearner]; }; DREGAR = derive2 { name="DREGAR"; version="0.1.3.0"; sha256="15cplshs85r0z659mc7xmj5db7vc95wxs01c34isc22p8z0a287i"; depends=[msgps]; }; DRHotNet = derive2 { name="DRHotNet"; version="2.2"; sha256="1014c94n8qpy9k8wngayhy0rrny7c3i0i1mj02akwpgqvfj2k5sm"; depends=[PBSmapping raster sp spatstat spatstat_geom spatstat_linnet spdep]; }; @@ -1170,11 +1189,11 @@ in with self; { DSWE = derive2 { name="DSWE"; version="1.6.2"; sha256="0abndiqxcd7q3ll9ylk9h34l9fi8mliwgjvzg2ld9i8dq4jlqfxl"; depends=[BayesTree dplyr e1071 FNN gss KernSmooth matrixStats mixtools Rcpp RcppArmadillo]; }; DSjobtracker = derive2 { name="DSjobtracker"; version="0.1.1"; sha256="1vi07n7ygsdjj4830rnx7kvacmnizl146c6bfw2fnby47apg38f9"; depends=[]; }; DSpoty = derive2 { name="DSpoty"; version="0.1.0"; sha256="18z8gk3zj7k2szxg9579qy5klrqjw6zsk5x9jmwrv4qhb98fyji6"; depends=[dplyr httr purrr stringr]; }; - DT = derive2 { name="DT"; version="0.27"; sha256="16i82f380ibl0caqvkg010zbxzav0iwwxac8zwy96c745g6xqbz3"; depends=[crosstalk htmltools htmlwidgets jquerylib jsonlite magrittr promises]; }; + DT = derive2 { name="DT"; version="0.28"; sha256="0khdl21kvgi9k7dlpfshk1xz9bkly5lq6p41plfh4g2jv1yxaxfr"; depends=[crosstalk htmltools htmlwidgets jquerylib jsonlite magrittr promises]; }; DTAT = derive2 { name="DTAT"; version="0.3-6"; sha256="0ll11763c03xll02727jwm637vbq438vivr88f45nbwrpsk9nb34"; depends=[data_table dplyr Hmisc jsonlite km_ci pomp r2d3 shiny survival]; }; DTAXG = derive2 { name="DTAXG"; version="0.1.0"; sha256="1jxa0ix0z35i0xdnjl698j8iqjmp6nz8ckah9bap5ay9rkq0xd7f"; depends=[]; }; DTAplots = derive2 { name="DTAplots"; version="1.0.2.5"; sha256="1jwfh8j8ahaj2z19g2f70r652j77q4f0b7j91mggsb0dgk449342"; depends=[]; }; - DTComPair = derive2 { name="DTComPair"; version="1.1.0"; sha256="1q8fqjynyf5y753rbhy1dpjxxr1z5ffhn5pna03agshisnicdgpa"; depends=[gee PropCIs]; }; + DTComPair = derive2 { name="DTComPair"; version="1.2.0"; sha256="0wlbxqkm9jqqfr6h2a42zjixvlpq2fyij972372z4qk9qr06li2g"; depends=[ellipse gee PropCIs]; }; DTDA = derive2 { name="DTDA"; version="3.0.1"; sha256="1x65ahrci7n8v5d6nfz2p3p1x0zjam3a2mvw9m1rpdmfgbalpim7"; depends=[doParallel foreach]; }; DTDA_cif = derive2 { name="DTDA.cif"; version="1.0.2"; sha256="12vkhqxdhir06s35kr76dwns9m02wyicz3mv4r56fqglsfyw77xr"; depends=[doParallel foreach Rcpp]; }; DTDA_ni = derive2 { name="DTDA.ni"; version="1.0.1"; sha256="0lv8k37n271zcmp5mxxc6z03bx283lnc4iz3zz1k2mnfzq2wrahz"; depends=[]; }; @@ -1211,13 +1230,15 @@ in with self; { DataFakeR = derive2 { name="DataFakeR"; version="0.1.3"; sha256="1a25qp627n76qi4xzj62ipiy3qs2qvajcy9inzibwymryizlr0ia"; depends=[dplyr glue magrittr purrr R6 tibble tidygraph yaml]; }; DataGraph = derive2 { name="DataGraph"; version="1.2.14"; sha256="1vj008c6l1k738kp8f9vmwm6b9jnyjgix389nqgbfq8ia98qgz0k"; depends=[Rcpp]; }; DataLoader = derive2 { name="DataLoader"; version="1.3"; sha256="18mih6mb95v5xjvmqwby2mma74fcxwyqdm5w8j3bhi4iwgfn6d7v"; depends=[plyr rChoiceDialogs readxl xlsx]; }; + DataSetsUni = derive2 { name="DataSetsUni"; version="0.1"; sha256="0dbi0jgzh2qxwsid9yp4mdwhrm7mcksx8jvpa91qfnfc26ipdw6n"; depends=[]; }; DataSpaceR = derive2 { name="DataSpaceR"; version="0.7.6"; sha256="1asrslqmk4sjj99x8pb01yfrw57p64zc6klrk2ghz4g44fr9d0pq"; depends=[assertthat curl data_table digest httr jsonlite R6 Rlabkey]; }; DataVisualizations = derive2 { name="DataVisualizations"; version="1.2.3"; sha256="1im1jh5lifphm2ld1fs54bglh018hw9vs8n8bb56a0k7vi27jr9f"; depends=[ggplot2 pracma Rcpp RcppArmadillo reshape2 sp]; }; DataViz = derive2 { name="DataViz"; version="0.2.8"; sha256="1dr5nvdzc63x9ymlysvv5i8b7zcffq13pa39q0ychdwr1s3x7vzw"; depends=[Rcpp tibble]; }; - DatabaseConnector = derive2 { name="DatabaseConnector"; version="6.1.0"; sha256="08cvihgghxp6ivnsiii416r60c9ria6a3si7ny0zk71f6qj2i0az"; depends=[bit64 checkmate DBI dbplyr digest readr rJava rlang SqlRender stringr urltools]; }; + DatabaseConnector = derive2 { name="DatabaseConnector"; version="6.2.1"; sha256="1dz9sjwfvw2xxygyi4h3d57qp2w7fl6w79ifkkacmypj52wv6384"; depends=[bit64 checkmate DBI dbplyr digest readr rJava rlang SqlRender stringr urltools]; }; DatabaseConnectorJars = derive2 { name="DatabaseConnectorJars"; version="1.1.0"; sha256="18m6ynj30r5xdy51b3s39h0jcz1k2wgka888skr6ds2233lhqk2w"; depends=[rJava]; }; DatabionicSwarm = derive2 { name="DatabionicSwarm"; version="1.1.6"; sha256="0i96664h4d6b76xk7c2vdma2am627acfzr79wyy8i17ciis452ph"; depends=[deldir GeneralizedUmatrix Rcpp RcppArmadillo]; }; DatastreamDSWS2R = derive2 { name="DatastreamDSWS2R"; version="1.8.2"; sha256="018733gm5z90qhbci6khxx27pn074si176mwnlq53bd6r722jiwm"; depends=[dplyr foreach httr jsonlite stringi stringr xts zoo]; }; + DateTimeRangePicker = derive2 { name="DateTimeRangePicker"; version="1.0.0"; sha256="0bbx3801i7iisyvsfssnvph01s20ynfm65kyi2kp7ga7xafwbafc"; depends=[htmltools lubridate reactR shiny]; }; Davies = derive2 { name="Davies"; version="1.2-0"; sha256="0n2pqipv0b1w2zjvycms0kyk7h8ps49f5jlzgyxhy9dlyr0ivaml"; depends=[mathjaxr]; }; DeCAFS = derive2 { name="DeCAFS"; version="3.3.3"; sha256="0dj32rck6ssyv82d8b75qgsqw319q02iqd3xxazy6251wcjn321i"; depends=[ggplot2 Rcpp robustbase]; }; DeRezende_Ferreira = derive2 { name="DeRezende.Ferreira"; version="0.1.0"; sha256="05c99z3hlwwm0p02cl9z6gjwfxfq2b2qn90l85270bi16llgf42h"; depends=[xts]; }; @@ -1238,13 +1259,12 @@ in with self; { DensParcorr = derive2 { name="DensParcorr"; version="1.1"; sha256="1ifkg7cpimf27yhr60rks77r16kmhwa5h10wv7b64sbfncnyzfmj"; depends=[clime gplots]; }; DepCens = derive2 { name="DepCens"; version="0.2.3"; sha256="0sz7bj6pqwj6appyymajav0q5g1hrpaa8m75rx4drfjdp0lv7ihq"; depends=[dlm Formula matrixStats rootSolve survival]; }; DepLogo = derive2 { name="DepLogo"; version="1.2"; sha256="13y3akmrj5x1mn1sgha1jryzswg4kqxwswbm3m5z92mcm2zw4r9l"; depends=[]; }; - DependencyReviewer = derive2 { name="DependencyReviewer"; version="1.2.3"; sha256="0zyya2r3k2pxcjyzxx615pdg00vywzybk848fcchmhdivy0p0am0"; depends=[cli desc dplyr knitr lintr magrittr pak pkgdepends readr rlang stringr tidygraph]; }; DepthProc = derive2 { name="DepthProc"; version="2.1.5"; sha256="0i7fks5hglf3xj8cj3sghjf0xcldhiqwf0jlpyk2a3mj9gaszc76"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm zoo]; }; Deriv = derive2 { name="Deriv"; version="4.1.3"; sha256="130g3mv0z9sqs6y23a0a94512iiw05yr6fp378vhdxxbignzbnyv"; depends=[]; }; - DescTools = derive2 { name="DescTools"; version="0.99.48"; sha256="0axn9sgv8cwzmrnwrpbla8zcfpii1xlsyjxbgk85xlcsmv05iq6v"; depends=[BH boot data_table Exact expm gld httr MASS mvtnorm Rcpp readxl rstudioapi]; }; + DescTools = derive2 { name="DescTools"; version="0.99.49"; sha256="0s2zh8xz06c45rbwcypgsa8shby66nm6sj90cb9d1bwb60mws8j5"; depends=[BH boot data_table Exact expm gld httr MASS mvtnorm Rcpp readxl rstudioapi withr]; }; DescToolsAddIns = derive2 { name="DescToolsAddIns"; version="1.10"; sha256="0wgcfrxf2vygr7rylkbfzlgldg6llg4k4bzwrq8c73miwac158js"; depends=[DescTools foreign manipulate rstudioapi writexl]; }; DescrTab2 = derive2 { name="DescrTab2"; version="2.1.16"; sha256="07921k8h50wycj0sijy8428p3c8ach90swgzz0s06b6z1yl2mnyg"; depends=[cli DescTools dplyr exact2x2 flextable forcats haven Hmisc kableExtra knitr magrittr nlme officer rlang rmarkdown scales stringr tibble]; }; - DescribeDF = derive2 { name="DescribeDF"; version="0.1.0"; sha256="189wlxws23r7n2cg3sb3y72839s1jqpw9vfb4db9y7gxkgw7m9lw"; depends=[dplyr e1071 fNonlinear psych tseries]; }; + DescribeDF = derive2 { name="DescribeDF"; version="0.2.1"; sha256="1nah46s4psi272idpkpzkx7zqy6vr6wdz5zfxyz17cld9q2lld47"; depends=[dplyr e1071 fNonlinear psych tseries]; }; DescribeDisplay = derive2 { name="DescribeDisplay"; version="0.2.9"; sha256="14iz7n00ll4gqm9xfwn79s7nhqhcs116hgpdfj2m9m9brpabpa6i"; depends=[GGally ggplot2 plyr reshape2 scales]; }; DescriptiveStats_OBeu = derive2 { name="DescriptiveStats.OBeu"; version="1.3.2"; sha256="0f2inlfkwl2q9ll5lh0ynpsbf6zci149s5nj0s0x0g98z72z8mly"; depends=[dplyr jsonlite magrittr RCurl reshape]; }; DescriptiveWH = derive2 { name="DescriptiveWH"; version="1.0.3"; sha256="17baga9vs8959bzm7qs11zj35a6glh1ig5qz8kwq7m69h51l2gar"; depends=[]; }; @@ -1263,7 +1283,7 @@ in with self; { DiPhiSeq = derive2 { name="DiPhiSeq"; version="0.2.0"; sha256="11l2inf99vxz9k292307j8c2b25kc1066svy3vxrfl72rrm4fqa7"; depends=[]; }; DiPs = derive2 { name="DiPs"; version="0.6.4"; sha256="148lbw5f62sm93n5bgn6rswqi3g7j6prdrscz56xalj65d3z1dz5"; depends=[mvnfast plyr rlemon]; }; DiSSMod = derive2 { name="DiSSMod"; version="1.0.0"; sha256="199yipbc2sx2lsl51rpfyh80bfxaahfd2llqmfsp946gvj7339hv"; depends=[MASS matrixcalc psych sfsmisc]; }; - DiagrammeR = derive2 { name="DiagrammeR"; version="1.0.9"; sha256="1gqaqk7jdh37zzadv0aymr9yb8lpqgj3l8n1n3cds38i4zz2d934"; depends=[downloader dplyr glue htmltools htmlwidgets igraph influenceR magrittr purrr RColorBrewer readr rlang rstudioapi scales stringr tibble tidyr viridis visNetwork]; }; + DiagrammeR = derive2 { name="DiagrammeR"; version="1.0.10"; sha256="147q7zgwhd7vc0l134sqkkf6n6s6bznxvcmsrdx2f5df12bsixkj"; depends=[downloader dplyr glue htmltools htmlwidgets igraph magrittr purrr RColorBrewer readr rlang rstudioapi scales stringr tibble tidyr viridis visNetwork]; }; DiagrammeRsvg = derive2 { name="DiagrammeRsvg"; version="0.1"; sha256="0j2cm1mx3zrb2k3pcrb96z2z3kws61gyyjsjjv5rqcb5lzdgi65k"; depends=[V8]; }; DiallelAnalysisR = derive2 { name="DiallelAnalysisR"; version="0.5.0"; sha256="0w053vqp23hqixgn32g5d8a0l9hcxp6w2fm1sx3ysxr4p0yz7g14"; depends=[ggplot2]; }; DiceDesign = derive2 { name="DiceDesign"; version="1.9"; sha256="1a8ixa65xgyfri03cviic8qi2plbhdyz8m02bwif8w94w0q3ghlk"; depends=[]; }; @@ -1303,14 +1323,13 @@ in with self; { DiversificationR = derive2 { name="DiversificationR"; version="0.1.0"; sha256="1gybzpv5bl17lp1nxhqzsvj585j3lylfd388vp401lmri3k8r4cs"; depends=[]; }; DiversityOccupancy = derive2 { name="DiversityOccupancy"; version="1.0.6"; sha256="16x3fpchgd12mccvr1k11vjka97sy5vjvjcyd5y3pskgnpycc2sv"; depends=[dplyr ggplot2 glmulti MuMIn qpcR raster unmarked vegan]; }; DoE_MIParray = derive2 { name="DoE.MIParray"; version="1.0"; sha256="09czqhd07hjx35w2a48sgpn9j5y6k1sy92gwhsbbik9s99n7q9gy"; depends=[combinat DoE_base]; }; - DoE_base = derive2 { name="DoE.base"; version="1.2-1"; sha256="020gzszh65bbfhv58ry2jxmdn7cv96432f2fjpy6xz6gh6927i99"; depends=[combinat conf_design lattice MASS numbers partitions vcd]; }; + DoE_base = derive2 { name="DoE.base"; version="1.2-2"; sha256="105i16pdhrbhc79czcpnfsx6cwvznscnrgl8i28c6gx2br5j37v9"; depends=[combinat conf_design lattice MASS numbers partitions vcd]; }; DoE_wrapper = derive2 { name="DoE.wrapper"; version="0.11"; sha256="08bgfaiivqqnkhjb18flk1cpa33rh70i6g8v25x1ma3ffxqrwh96"; depends=[AlgDesign DiceDesign DoE_base FrF2 lhs rsm]; }; DoEstRare = derive2 { name="DoEstRare"; version="0.2"; sha256="0y9ymw7114jk1rwiasq400bpgvkxv6rpc954c7v9mgxd3c2nfza7"; depends=[]; }; DoTC = derive2 { name="DoTC"; version="0.2"; sha256="1hjjkmxrbiysy3xl6n4q7kxcygdq68jcsgki1p937zj9a17sa62j"; depends=[ggplot2 plyr]; }; DockerParallel = derive2 { name="DockerParallel"; version="1.0.4"; sha256="1fgs2f5czb05fiqxqp00qggni041ml4s3x05h9n4mmka9mwxi34b"; depends=[jsonlite]; }; Dodge = derive2 { name="Dodge"; version="0.9-2"; sha256="0767n6hyspqrv5cgx3ghhai0qffj6haga7s86pv7mq8zvjcxjlzv"; depends=[]; }; - DominoDataCapture = derive2 { name="DominoDataCapture"; version="0.1.1"; sha256="168nvarg58x0w7bi365rd810gl5xz1b2kv8jv0myb7qwxdw1igm4"; depends=[lgr rjson uuid]; }; - DoseFinding = derive2 { name="DoseFinding"; version="1.0-3"; sha256="09456a5b2cjjsx45fmlzpcyg5mc7di0mh6v80pmil717qklxc0w6"; depends=[ggplot2 lattice mvtnorm]; }; + DoseFinding = derive2 { name="DoseFinding"; version="1.0-4"; sha256="1kywq7fqi8864bnzr66rn2ix3lkipg4yx3pdw81r0131wmxwddv2"; depends=[ggplot2 lattice mvtnorm]; }; DoubleCone = derive2 { name="DoubleCone"; version="1.1"; sha256="1kbvsj93nn2306s6pgqiiznmlcn2nqsgcxinihl613ivczxhzpqg"; depends=[coneproj MASS Matrix]; }; DoubleExpSeq = derive2 { name="DoubleExpSeq"; version="1.1"; sha256="00xpj5xmpgmvp6h76imkmghrnlfk6c50ydvv0jram6m6ix3z8323"; depends=[numDeriv]; }; DoubleML = derive2 { name="DoubleML"; version="0.5.3"; sha256="1s1zpq5yz6l4b65p9mdpb91fsvhw6wifh3dvhwzyj7xn4nraaayv"; depends=[checkmate clusterGeneration data_table mlr3 mlr3learners mlr3misc mlr3tuning mvtnorm R6 readstata13]; }; @@ -1322,7 +1341,6 @@ in with self; { DramaAnalysis = derive2 { name="DramaAnalysis"; version="3.0.2"; sha256="0nsnwais0r592c50nphfzkr1bbygl67mriwsx7dxbvmpdsswlvl1"; depends=[data_table git2r httr readr reshape2 stringr tokenizers xml2]; }; DriftBurstHypothesis = derive2 { name="DriftBurstHypothesis"; version="0.4.0.1"; sha256="1pmsbv1rl79s520nxj536m8gf7xyfjskj8r88rxmxscbgp8c1xz2"; depends=[Rcpp RcppArmadillo xts zoo]; }; DrillR = derive2 { name="DrillR"; version="0.1"; sha256="0n7pim5kk0wfdjcc67v4vvdb7wyhn5bcgi2a12nbyfyydss7pk1g"; depends=[httr]; }; - DriveML = derive2 { name="DriveML"; version="0.1.5"; sha256="0gbrrlz40cs95ml92k7q1lrxkm9iv5bjsr2sy9c7jzygnrlmnmms"; depends=[caTools data_table ggplot2 iml mlr ParamHelpers rmarkdown sampling SmartEDA]; }; DrugClust = derive2 { name="DrugClust"; version="0.2"; sha256="0acvjqwzkbjmy101m501l7fkfxzkp6zflwvn56li5307xv9ggnfg"; depends=[cclust cluster e1071 MESS ROCR]; }; DrugExposureDiagnostics = derive2 { name="DrugExposureDiagnostics"; version="0.4.1"; sha256="0x3rfcvnabiaycfcjfsq625nz0fhy9wkpqfc6y2bn753iglwbqk5"; depends=[CDMConnector checkmate dplyr glue magrittr rlang tidyr tidyselect]; }; DrugSim2DR = derive2 { name="DrugSim2DR"; version="0.1.0"; sha256="16m1gqs5m7pi8nlr6n8wh7dk3wjjiwhiqm96h8jxavfizv0bkj6n"; depends=[ChemmineR igraph pheatmap reshape2 rvest sp tidyr]; }; @@ -1334,7 +1352,7 @@ in with self; { DynClust = derive2 { name="DynClust"; version="3.24"; sha256="0nbbzx0ixblpcbjxx0gp7082nz6nh5vc2l5nzdfq1mqzlq9jy2xn"; depends=[]; }; DynForest = derive2 { name="DynForest"; version="1.1.1"; sha256="08rqwhw08aqm1zqjcvma36z8nbp73jjmas1yn23zqv1hb76airsj"; depends=[cmprsk DescTools doParallel foreach ggplot2 lcmm pbapply pec prodlim stringr survival zoo]; }; DynNom = derive2 { name="DynNom"; version="5.0.2"; sha256="1zs8chdw83qjsi5k1m9cvk48swqz3gadycmhk4prxmjzwcl5z4i1"; depends=[BBmisc compare dplyr ggplot2 magrittr plotly prediction rms shiny stargazer survival]; }; - DynTxRegime = derive2 { name="DynTxRegime"; version="4.11"; sha256="181hmfkv0sgxlllfhx0rwl57r1ql2iy19iipsrvkabflqhzdr8cc"; depends=[dfoptim kernlab modelObj rgenoud]; }; + DynTxRegime = derive2 { name="DynTxRegime"; version="4.12"; sha256="07q6z2j73b3vcspkq4jkw4z7l618qgq9683dd0yljjq1l71fvl4i"; depends=[dfoptim kernlab modelObj rgenoud]; }; DynaRankR = derive2 { name="DynaRankR"; version="1.1.0"; sha256="1fzicainh1dm016cglm2x6j1i2g5r71vgrj0dnsflbxc5v426sqm"; depends=[dplyr rlang]; }; DynamicGP = derive2 { name="DynamicGP"; version="1.1-9"; sha256="00hf3r39b9xid129kzgdnwdfrwrspxkz7dydgna3c5lrl7670paz"; depends=[lhs]; }; DynareR = derive2 { name="DynareR"; version="0.1.3"; sha256="06n0gsbn8gphsirj3l1izd84dnjnik6n5l4vkp8flkzynccx3rps"; depends=[kableExtra knitr magrittr]; }; @@ -1344,20 +1362,21 @@ in with self; { EATME = derive2 { name="EATME"; version="0.1.0"; sha256="1bdiyrq1gay8mz3rkq2cwsw0x2b70i31gs79cyhxil2zh8jf25xf"; depends=[qcr]; }; EAinference = derive2 { name="EAinference"; version="0.2.3"; sha256="1kzcfya3z6rf1vqjn72yjymdhrn4dzgmwifh3w6k22cy5jxffzn4"; depends=[hdi limSolve MASS msm mvtnorm Rcpp RcppArmadillo]; }; EBCHS = derive2 { name="EBCHS"; version="0.1.0"; sha256="103k4y105dn8v5yb5xk520404sd7c05cxd9iwh2k2v18kbvg8pdp"; depends=[fda pracma]; }; + EBEN = derive2 { name="EBEN"; version="5.1"; sha256="13cvdx2mg1jhymvq49wm2rm1pajsd4ji274r7zaklcwy4lw5bml4"; depends=[]; }; EBMAforecast = derive2 { name="EBMAforecast"; version="1.0.3"; sha256="01v7v40h7pmm5h1rl63m7n0jfbb208qvzn5w563kfhlyamh84zm2"; depends=[abind gtools Hmisc plyr Rcpp separationplot]; }; EBPRS = derive2 { name="EBPRS"; version="2.1.0"; sha256="14wal81cai08xr26fpc2w4ramr5jyv7vwfyqb5hzw3kqxx76y9xx"; depends=[BEDMatrix data_table ROCR]; }; - EBglmnet = derive2 { name="EBglmnet"; version="5.2"; sha256="1nby88gflwx3y2bk4f1ga5bww14s2jb0005d6q91a5ivw2xj9ry8"; depends=[]; }; + EBglmnet = derive2 { name="EBglmnet"; version="6.0"; sha256="014rpci2lcrqaldir2ds1fvzbvkj6n00n9xzl5m0f60zzg9cckjm"; depends=[]; }; EBrank = derive2 { name="EBrank"; version="1.0.0"; sha256="1qzhrr3n2zv31mjp224b35324nr9nigzazyfv11j4zhwl1ipf632"; depends=[]; }; ECGofTestDx = derive2 { name="ECGofTestDx"; version="0.4"; sha256="0y8bw1k9spwxyzc7vsi2iblnmjsidxbybjrzzh2j6frjmv3rk4g1"; depends=[bootstrap orthopolynom]; }; ECLRMC = derive2 { name="ECLRMC"; version="1.0"; sha256="01z2hmbpb754s2rsvx3i5wf7kkkr2mvs2g89ih2bqrif7w5rmgyg"; depends=[softImpute]; }; - ECOSolveR = derive2 { name="ECOSolveR"; version="0.5.4"; sha256="0973m346vakgddp92dzqlky0wa196hj341r9y7rz67bc2zl8jx2x"; depends=[]; }; + ECOSolveR = derive2 { name="ECOSolveR"; version="0.5.5"; sha256="1izc8dwj438wpkmdmhwnnhkijz5skig4gwxgr6f1bzmj08bfv515"; depends=[]; }; ECOTOXr = derive2 { name="ECOTOXr"; version="1.0.1"; sha256="1nc0kgi6ii6kdfl29c1f2ahdk943fzlrxm216a5r3hbipmaw9k64"; depends=[crayon dbplyr dplyr httr jsonlite lifecycle purrr rappdirs readr readxl rlang RSQLite rvest stringr tibble tidyr tidyselect]; }; ECTTDNN = derive2 { name="ECTTDNN"; version="0.1.0"; sha256="1ddwf040yp4c7nxvivml0xhad5qdc6jlf17c1lh4mssm5c0pp14w"; depends=[forecast urca vars]; }; ECctmc = derive2 { name="ECctmc"; version="0.2.5"; sha256="0prryvc17bm1xrhzlqk2w9nj181bg99j1dph3d36h0n1vfq1d7if"; depends=[Rcpp RcppArmadillo]; }; ECharts2Shiny = derive2 { name="ECharts2Shiny"; version="0.2.13"; sha256="0dq8ja4ydxnc7qx35qhh9ryqgi7ambwz6ka2821mmq3p994crswn"; depends=[jsonlite shiny]; }; ECoL = derive2 { name="ECoL"; version="0.3.0"; sha256="02j4yl6hi83f6m529r6n0gaz8wsy2pi0ncy2g95fjhs8ib0kfn4f"; depends=[cluster e1071 FNN igraph MASS]; }; EDA = derive2 { name="EDA"; version="1.3"; sha256="08zqykvga7w07iy00c94q03mrxmjv649ggk7lmksjzy5j3wgyb6d"; depends=[ggplot2]; }; - EDCimport = derive2 { name="EDCimport"; version="0.2.1"; sha256="1d80dsfi94yg95lcnq60nnfpfd2bphqrd68k7ilcs809v95da4nx"; depends=[cli dplyr forcats glue haven labelled purrr readr rlang stringr tibble tidyr]; }; + EDCimport = derive2 { name="EDCimport"; version="0.3.0"; sha256="0kb5m60x4pgj5d4m2wmq0mf5xv7v4j3nmlyx8ss4l6hlb3ykq03z"; depends=[cli dplyr forcats ggplot2 glue haven labelled purrr readr rlang stringr tibble tidyr tidyselect]; }; EDFtest = derive2 { name="EDFtest"; version="0.1.0"; sha256="1z6ayi0513ibyk0gjfxcd1rybp5374xhbf9zkkm669wdmfggx26h"; depends=[CompQuadForm rmutil]; }; EDISON = derive2 { name="EDISON"; version="1.1.1"; sha256="12cc13ng5fc4nm0nvqxqplpb2ycz4cln73xqkk85dka2fnpykjc7"; depends=[corpcor MASS]; }; EDIutils = derive2 { name="EDIutils"; version="1.0.2"; sha256="1yfn26js5sdr7k07s45mqxla6apzb4ykwa5pa634zgivqs6g9jry"; depends=[curl httr jsonlite xml2]; }; @@ -1365,6 +1384,7 @@ in with self; { EDNE_EQ = derive2 { name="EDNE.EQ"; version="1.0"; sha256="13aflnpznpzjrrdrn0r7v2mch6hjd77s6c3l7mnc2p59vq7mzmpg"; depends=[MASS]; }; EDOIF = derive2 { name="EDOIF"; version="0.1.3"; sha256="1lq4j5axybhv34mdsz0rn5nz9x3rzjf6bczzfzrf75k6pwqxim1w"; depends=[boot distr ellipsis ggplot2 igraph simpleboot]; }; EDOtrans = derive2 { name="EDOtrans"; version="0.2.2"; sha256="0n397z0nwz1my8d27dl5x61lzl5q1773lgqmxxj0a5a83i8srbx0"; depends=[ABCanalysis opGMMassessment]; }; + EEAaq = derive2 { name="EEAaq"; version="0.0.1"; sha256="13hm3amlii7rxpa9x0x2y3bdl96r0s59zswmkfdxnm1pkcg7jig4"; depends=[aweek dplyr ggplot2 ggspatial gstat htmlwidgets leaflet lubridate mondate raster readr sf sp stringr tibble tictoc tidyr]; }; EEM = derive2 { name="EEM"; version="1.1.1"; sha256="0w20kakgcpyhfi7fcrss4w67pbaj87hi2scy7g05q3sg2ygac7gj"; depends=[colorRamps ggplot2 R_utils reshape2 sp]; }; EEMDSVR = derive2 { name="EEMDSVR"; version="0.1.0"; sha256="0m28rrw7lg3sx2aviqphsid2rsp7zksd3fcvk7pxfw16z90y7ifd"; depends=[e1071 Rlibeemd]; }; EEMDelm = derive2 { name="EEMDelm"; version="0.1.1"; sha256="0riz6s53daqbhy3xif0z8brb0n4swfjxxvvdnx2wwaiwl098rmwa"; depends=[forecast nnfor Rlibeemd]; }; @@ -1373,15 +1393,16 @@ in with self; { EFA_MRFA = derive2 { name="EFA.MRFA"; version="1.1.2"; sha256="0p1zkfwjch9y39r7hjccjk7vfbnfwpdak6jfjs1sdpqkjqiw3r86"; depends=[ggplot2 PCovR psych reshape2 scales]; }; EFA_dimensions = derive2 { name="EFA.dimensions"; version="0.1.7.7"; sha256="08mfillvxf2gvaisxrx9r842ky4kippqbpiklgjyxanssabk3jdg"; depends=[EFAtools mirt polycor psych]; }; EFAtools = derive2 { name="EFAtools"; version="0.4.4"; sha256="1fzkmvadkcd88d81420lw9mhpmxbjymp4jada2c79bxq1h6b3mw2"; depends=[checkmate cli crayon dplyr future future_apply ggplot2 GPArotation lavaan magrittr progress progressr psych Rcpp RcppArmadillo rlang stringr tibble tidyr viridisLite]; }; - EFAutilities = derive2 { name="EFAutilities"; version="2.1.2"; sha256="1mrkjj6dnk2b2zd1pccnglxyxjyz6wlyy7wlaflaj747148g08a7"; depends=[GPArotation MASS mvtnorm plyr]; }; + EFAutilities = derive2 { name="EFAutilities"; version="2.1.3"; sha256="09835x3nk8nnr3ibiddc5hx2l0jylz15fwsy2wjmv6jdrs0j9vsy"; depends=[GPArotation MASS mvtnorm plyr]; }; EFDR = derive2 { name="EFDR"; version="1.2"; sha256="1k6y2qxfw5py1brh25apmzqm00y3a458x0wrrmdg604g1m9zlkg5"; depends=[copula doParallel dplyr foreach gstat Matrix sp tidyr waveslim]; }; EFS = derive2 { name="EFS"; version="1.0.3"; sha256="1q8cf8dnxpv5s3lr9145y0wjhak4rz18dzah4xfs5qr4c8nlpl54"; depends=[party pROC randomForest ROCR]; }; EGAnet = derive2 { name="EGAnet"; version="1.2.3"; sha256="10vfv8fkk8kfcspp4p8avz16ipj58231q43rzrmwmcfx362q3g48"; depends=[GGally ggdendro ggplot2 ggpubr glasso igraph lavaan Matrix matrixcalc network OpenMx pbapply qgraph semPlot]; }; - EGRET = derive2 { name="EGRET"; version="3.0.8"; sha256="1dzqqbijmry48dnpixnhgcsvsz48rbyhxm2pi965js1bghfzpq17"; depends=[dataRetrieval fields foreach MASS survival truncnorm]; }; + EGRET = derive2 { name="EGRET"; version="3.0.9"; sha256="1if22yq5wyfd0sx5b38xw3fbj8qlmbnkikjq77ihxd3pzfjpdl14"; depends=[dataRetrieval fields foreach MASS survival truncnorm]; }; EGRETci = derive2 { name="EGRETci"; version="2.0.4"; sha256="1g01a03smn5yp261cyk3x310m1mcv4bqyh8y123wam9gpa7dxrp6"; depends=[binom EGRET]; }; EGRNi = derive2 { name="EGRNi"; version="0.1.6"; sha256="0wgdhlmnch6gpypqlwd5z56ia03lbbimr4ci9gcfs8f881dh92dy"; depends=[fdrtool gdata MASS readr]; }; EHR = derive2 { name="EHR"; version="0.4-11"; sha256="0iz69bk5l164c7qpmnwlbrpxn99d8jm0x6hck2bj8jd52q4kvfvi"; depends=[data_table lubridate pkdata]; }; EHRtemporalVariability = derive2 { name="EHRtemporalVariability"; version="1.1.4"; sha256="02izrgl526znn4xs10c5l3gv0b5chmgr376i26nli988cypmf32h"; depends=[dplyr lubridate MASS plotly RColorBrewer scales viridis xts zoo]; }; + EIAapi = derive2 { name="EIAapi"; version="0.1.1"; sha256="021mbyxx9swr2wn85mifqg8pwdvrx0hnds6l209zl8f79ndyhlz4"; depends=[data_table jsonlite]; }; EIX = derive2 { name="EIX"; version="1.2.0"; sha256="02ry0aqqnd0zh6zbvx1dbq3sdahyqcgabhkvbbw4ig0qk70w62aj"; depends=[DALEX data_table ggiraphExtra ggplot2 ggrepel iBreakDown MASS purrr scales tidyr xgboost]; }; EKMCMC = derive2 { name="EKMCMC"; version="1.1.2"; sha256="0filw1xikbv55h7xswlqifd30d43b9y3h2m6i0zv8v54y8mmszfg"; depends=[numDeriv]; }; EL = derive2 { name="EL"; version="1.2"; sha256="1ygvb8m33szf2xl6fcvyqhgpj7ppn4kc9wd1fcaq4ppbvv6c17ka"; depends=[]; }; @@ -1415,7 +1436,7 @@ in with self; { EMT = derive2 { name="EMT"; version="1.3"; sha256="0zmcakph88qg9f1p7icn4llw92nh1jfijxsx3rhl7g9d4rihprq5"; depends=[]; }; EMbC = derive2 { name="EMbC"; version="2.0.3"; sha256="0ns6jmshblf00n4harhls03q9c6h1wvgvjzn8jvr3kf4gm2iz2jd"; depends=[maptools mnormt RColorBrewer Rcpp RcppArmadillo sp]; }; EMpeaksR = derive2 { name="EMpeaksR"; version="0.3.1"; sha256="0hzw4hnisqa13h75faq4hdsmg3y6dlmfknbkql4mbdx4s3qb19fv"; depends=[]; }; - ENMTools = derive2 { name="ENMTools"; version="1.1.0"; sha256="1bvfwhmzc8nx0igz67nsrkgibzxg2xfyjlvdq4p5pslr4759ddks"; depends=[dismo ENMeval forcats ggplot2 ggpubr gridExtra knitr lhs magrittr raster sp spatstat_geom spatstat_random terra]; }; + ENMTools = derive2 { name="ENMTools"; version="1.1.1"; sha256="04dvrdw7xnxxa9s1iyxjaf090mmm5kqn5minpz0znjfc9k92cfzs"; depends=[dismo ENMeval forcats ggplot2 ggpubr gridExtra knitr lhs magrittr raster sp spatstat_geom spatstat_random terra]; }; ENMeval = derive2 { name="ENMeval"; version="2.0.4"; sha256="1lb4bgnvig1sb88nfgylzps6kkw0jb5lz46yrqqk3ax71x33r7vd"; depends=[dismo doParallel doSNOW dplyr foreach ggplot2 glmnet magrittr maxnet rangeModelMetadata raster rlang tidyr]; }; EPGMr = derive2 { name="EPGMr"; version="1.0.0"; sha256="1ii4lccv4hyydy3sd5l7c22pgx27x3mdml20sfbdj85pmpyab6q9"; depends=[]; }; EPLSIM = derive2 { name="EPLSIM"; version="0.1.0"; sha256="0x495638nh0n0k3i80vs7bcbdrgvw5fkib8dvwwgzgdgb419hakm"; depends=[ciTools ggplot2 MASS]; }; @@ -1430,6 +1451,7 @@ in with self; { ESTER = derive2 { name="ESTER"; version="0.2.0"; sha256="1jiyqq5hgqc754r434sik9jnlpw66xz56cjdf5ig95qkffzsg224"; depends=[brms cowplot doParallel dplyr foreach ggplot2 lme4 magrittr rlang tidyr]; }; EScvtmle = derive2 { name="EScvtmle"; version="0.0.2"; sha256="0bp5ykqczj6zyb9g5rg9zwwdyvd3l530km927wwxdi862sh5ri5g"; depends=[dplyr ggplot2 gridExtra MASS origami stringr SuperLearner tidyselect]; }; ETAS = derive2 { name="ETAS"; version="0.5.1"; sha256="03721z7fsbkqv5wiybm01nxbl99x8wf2214y3w139k0zr42xk94s"; depends=[fields goftest lattice maps Rcpp spatstat_explore spatstat_geom spatstat_random]; }; + ETASbootstrap = derive2 { name="ETASbootstrap"; version="0.1.0"; sha256="0fianmqnbrscrkbqqg3lw53j0cczygrb3mhy80zcnsr0rmk02zj2"; depends=[ETAS MASS]; }; ETC = derive2 { name="ETC"; version="1.5"; sha256="16ciff8bf2p56941r83y7405sp5pfms63dwjd232ih3mnznjpc0f"; depends=[mvtnorm]; }; ETLUtils = derive2 { name="ETLUtils"; version="1.5"; sha256="0s0q4f3wzpdd87l3pnzysa8aq7zgz29589xnm65a6xfy9znbpzs3"; depends=[bit ff]; }; EUfootball = derive2 { name="EUfootball"; version="0.0.1"; sha256="0h36cqi752zs32gs55rdniabldr8jph7gc1y2yb9983cl4mfrjv0"; depends=[]; }; @@ -1437,18 +1459,19 @@ in with self; { EValue = derive2 { name="EValue"; version="4.1.3"; sha256="0ip4cyipbs6g0znrdh5zs4xizmqgdznq8riggkgyv06wipgx9a2j"; depends=[boot dplyr ggplot2 metadat metafor MetaUtility]; }; EWGoF = derive2 { name="EWGoF"; version="2.2.2"; sha256="19gd9grjjdv6hilqj41g5qhz7m0ga40q88clwggbp5f0f1yd5sym"; depends=[Rcpp]; }; EWS = derive2 { name="EWS"; version="0.2.0"; sha256="0rkxnc5pwrjgm2j201rg0z4nqb75rpkqh3hff4lvw1zmnr9flm6r"; depends=[numDeriv]; }; + EWSmethods = derive2 { name="EWSmethods"; version="1.1.2"; sha256="14hqvxsv88n6sqvwh3sqy6k0s7c121b52bm3krnqsxy872hjl346"; depends=[dplyr egg foreach forecast ggplot2 gtools infotheo moments rEDM reticulate scales seasonal tidyr zoo]; }; EXRQ = derive2 { name="EXRQ"; version="1.0"; sha256="1iqsr52sl2j5q03122a7rsp6n6a2bkysk2r908c89l36gk4sj2i5"; depends=[mnormt quantreg]; }; EZtune = derive2 { name="EZtune"; version="3.1.1"; sha256="0scslbgbbwma7sr0w9awg58ly5jwn877xsk6q1gq0ss3rd17pmfk"; depends=[ada BiocStyle e1071 GA gbm glmnet optimx ROCR rpart]; }; Eagle = derive2 { name="Eagle"; version="2.5"; sha256="18y0hc5461gh7kp095xfpwpfnl7k3v545r8w6nrhabrhwsflrrij"; depends=[data_table fontawesome ggplot2 ggthemes mmap plotly R_utils Rcpp RcppEigen shiny shinyBS shinyFiles shinyjs shinythemes]; }; Ease = derive2 { name="Ease"; version="0.1.2"; sha256="0llx3pdpzjsw94nk62h6cif4gn97rhbq38vsqpdarx201q8qq2qx"; depends=[Rcpp RcppProgress]; }; EasyABC = derive2 { name="EasyABC"; version="1.5.2"; sha256="173830655knpmc9qb7i2n4332rn3d3qp6566kmr2hrw60gh94v1j"; depends=[abc lhs MASS mnormt pls tensorA]; }; - EasyDescribe = derive2 { name="EasyDescribe"; version="0.1.1"; sha256="15g37m28l40w71bvj02cbhfc6x77bjvr8mjr89iipdqzndp23g1i"; depends=[CATT fitdistrplus FSA gmodels multiCA nortest psych rcompanion]; }; + EasyDescribe = derive2 { name="EasyDescribe"; version="0.1.2"; sha256="1kjh45ndscwz1wdkf0rvnjw4qs73v9h1g45wagdqhsckywnhfksh"; depends=[car CATT clinfun fitdistrplus FSA gmodels multiCA nortest psych rcompanion]; }; EasyMx = derive2 { name="EasyMx"; version="0.3-2"; sha256="155grvar94bfwddp99ipvafnn52ssdh2jd4q6ddqnw3zmv506snf"; depends=[OpenMx]; }; EbayesThresh = derive2 { name="EbayesThresh"; version="1.4-12"; sha256="07a2dd3za2dc81n6m2xy794sclp3yw7f46lg1igaflh7m9407198"; depends=[wavethresh]; }; Ecdat = derive2 { name="Ecdat"; version="0.4-2"; sha256="1vyc4ynkd65mng2x8wvzn47crsvaqfz97n89jxn12xv13bpsbs7c"; depends=[Ecfun]; }; Ecfun = derive2 { name="Ecfun"; version="0.3-2"; sha256="1q0mx70hy18rabpabxghaixkb3r1432cxln844cac4dqxhvzcqgy"; depends=[BMA fda jpeg MASS mvtnorm rvest stringi TeachingDemos tis xml2]; }; EcoDiet = derive2 { name="EcoDiet"; version="2.0.0"; sha256="1lgjymm2anb7f11gvg0875wyjjfzbh0y1vwinbidpn2kmgm9b05h"; depends=[coda ggmcmc ggplot2 jagsUI]; }; - EcoEnsemble = derive2 { name="EcoEnsemble"; version="1.0.3"; sha256="0k1gz1kak037rydhx8db0bnbg6fbhyrck8vl6mfqdhjhm8iwy6xb"; depends=[BH cowplot dplyr ggplot2 matrixcalc Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders tibble]; }; + EcoEnsemble = derive2 { name="EcoEnsemble"; version="1.0.4"; sha256="0rprg2qcxf6kq0hp2c64l8vl9wcd0apjb1xvb79nbaa7pf28h57m"; depends=[BH cowplot dplyr ggplot2 matrixcalc Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders tibble]; }; EcoIndR = derive2 { name="EcoIndR"; version="1.8"; sha256="008wgp9zc8a8knz9ighgavrdm0yf37m5jahnq5kndjhld0359z6h"; depends=[rgeos]; }; EcoNetGen = derive2 { name="EcoNetGen"; version="0.2.3"; sha256="05j8m9vzkwlsw1h69s5myhbg85vyhqdxcl9r5mdwsrk9f58wajmz"; depends=[ggplot2 igraph]; }; EcoTroph = derive2 { name="EcoTroph"; version="1.6.1"; sha256="0nrq6n7amz8l6rk0wfyrih7rkic96yc02rpk4szis81v7yvm7346"; depends=[XML]; }; @@ -1471,7 +1494,6 @@ in with self; { EloOptimized = derive2 { name="EloOptimized"; version="0.3.1"; sha256="09bg1gm8jhjj0r7yzdgi2zlyavrizgiljwh26mpb6ng6p5mkliid"; depends=[BAMMtools dplyr lubridate magrittr reshape2 rlang]; }; EloRating = derive2 { name="EloRating"; version="0.46.11"; sha256="09nh3ia4s3c9yjhw0f0haqb26fryfc4lf9rgfcbqqzzwgdr1invj"; depends=[network Rcpp RcppArmadillo Rdpack sna zoo]; }; EloSteepness = derive2 { name="EloSteepness"; version="0.4.7"; sha256="11kfq8w6ywnzprhkv77aqyvak0h85kv51zfnmahpa8jw3amhkkl1"; depends=[aniDom BH EloRating Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; - ElstonStewart = derive2 { name="ElstonStewart"; version="1.2"; sha256="1lsapsz8w8srdqdkxvlg5nsn157wbihxjgdaf53r5iaxzcljkzxc"; depends=[digest kinship2]; }; EmbedSOM = derive2 { name="EmbedSOM"; version="2.1.2"; sha256="0k4hja5y7qd0n3gfaxzxrz4wpxc1w9d4d4xbb63rq2nfk3lj7a42"; depends=[FNN ggplot2 igraph Matrix Rtsne umap uwot]; }; EmiR = derive2 { name="EmiR"; version="1.0.4"; sha256="1xhsf9n5af6z7v62vpnqjlp20s6fp7jf1wmgxgv77hxm4g5cm0q7"; depends=[data_table dplyr gganimate ggplot2 mathjaxr plot3D Rcpp RcppProgress Rdpack tibble tictoc tidyr]; }; EmiStatR = derive2 { name="EmiStatR"; version="1.2.3.0"; sha256="1cwzzkynhnpjd1slnifdmkrshfpv99ryilxj27f98kwgbnb6i81a"; depends=[doParallel foreach lattice xts zoo]; }; @@ -1486,6 +1508,7 @@ in with self; { EnsembleCV = derive2 { name="EnsembleCV"; version="0.8"; sha256="1r9nmi2278lrwp5lpxhi78k10x8a5f5rh9xf1z5gfkc0bmpkhkvz"; depends=[EnsembleBase]; }; EnsemblePCReg = derive2 { name="EnsemblePCReg"; version="1.1.4"; sha256="0pii3w9dyv1505s92b03i42yiwq5vwa051674yzqxijj2mz7pvdh"; depends=[EnsembleBase]; }; EnsemblePenReg = derive2 { name="EnsemblePenReg"; version="0.7"; sha256="00218yh0vzlb5g94asq5nz4i8blppskdzz9fl4c0v3fld3kxz2md"; depends=[EnsembleBase glmnet]; }; + EntropicStatistics = derive2 { name="EntropicStatistics"; version="0.1.0"; sha256="1wi6kn4fhs3qsfikp9h9xjbdy5qcnvlm6zzyc2xprnjchg3lq5r5"; depends=[dplyr ggplot2 ggrepel hrbrthemes tibble tidyr tidyverse]; }; EntropyEstimation = derive2 { name="EntropyEstimation"; version="1.2"; sha256="13kb83lfpkw6yq687j0ci23yn5c9dqjibybyyaplk6jixy08lrvy"; depends=[]; }; EntropyMCMC = derive2 { name="EntropyMCMC"; version="1.0.4"; sha256="065djml9dmn5ahbgaljnshvhziwg61xciq6fzh76449x3wy6bg65"; depends=[mixtools RANN]; }; EnvCpt = derive2 { name="EnvCpt"; version="1.1.3"; sha256="1zv2x3svlqrfchr9j4bk2w2sx75zl4886pqk1c1sx5glqrkdbfki"; depends=[changepoint MASS zoo]; }; @@ -1494,7 +1517,7 @@ in with self; { EnvNicheR = derive2 { name="EnvNicheR"; version="1.4"; sha256="0hxx9wmzlw0clvdgdsy8msc78nvm81j3naxr57i7lqqa360sjy3a"; depends=[IDPmisc]; }; EnvStats = derive2 { name="EnvStats"; version="2.7.0"; sha256="10axzd4458lwvjibkk3i1szpmnx1hnhair3ihclwfmh8nvaz19h9"; depends=[ggplot2 MASS nortest]; }; EnviroPRA = derive2 { name="EnviroPRA"; version="1.0"; sha256="0yirh3vy7wap0qmm3kvjz9y68gcvp9i8qshv80wh8aijxwklpr8n"; depends=[fitdistrplus kSamples MASS truncdist]; }; - Epi = derive2 { name="Epi"; version="2.47"; sha256="1dkdx000cvy2rgxq3w6ppl3j9h7mwmcqg5xqsqh5hr3aks845pwx"; depends=[cmprsk data_table dplyr etm magrittr MASS Matrix mgcv numDeriv plyr survival zoo]; }; + Epi = derive2 { name="Epi"; version="2.47.1"; sha256="1a4h6hfpwcy3lb49y949h86vr4sdnjfbqqnr4jgc45mc64fhafp1"; depends=[cmprsk data_table dplyr etm magrittr MASS Matrix mgcv numDeriv plyr survival zoo]; }; EpiContactTrace = derive2 { name="EpiContactTrace"; version="0.17.0"; sha256="0s3mfv1djrq1kp75f94z4fhrx3jha4vvil30daxkw5b0iy3mvf5q"; depends=[]; }; EpiCurve = derive2 { name="EpiCurve"; version="2.4-2"; sha256="1z81zrg96hmgj2j37vwwg0bd84bq80ck3f704w9j6v0drckzh03j"; depends=[dplyr ggplot2 ISOweek RColorBrewer scales tibble timeDate]; }; EpiDynamics = derive2 { name="EpiDynamics"; version="0.3.1"; sha256="0m6yay3r7dqih19f76wxwgq6dh9p1zmp5d9ilj9nd262q61jcy53"; depends=[deSolve ggplot2 reshape2]; }; @@ -1505,8 +1528,8 @@ in with self; { EpiInvert = derive2 { name="EpiInvert"; version="0.3.1"; sha256="0afmgzx7ryvwb8ajkm0v077lrnahac8g3jqkk86imx4101dfg70q"; depends=[Rcpp]; }; EpiLPS = derive2 { name="EpiLPS"; version="1.1.0"; sha256="1axamip6f0dvl6zawqg6a35r4cbg0q4p70fpjl04p35c0gs3jgg2"; depends=[coda EpiEstim ggplot2 gridExtra Rcpp RcppArmadillo]; }; EpiModel = derive2 { name="EpiModel"; version="2.3.2"; sha256="0s5qmnqiln60j53qx2vb0855ddl2dg9x5iz6w7ihmdlnj5j000rp"; depends=[ape coda deSolve doParallel dplyr egor ergm ergm_ego foreach ggplot2 lazyeval network networkDynamic networkLite RColorBrewer Rcpp rlang statnet_common tergm tibble]; }; + EpiNow2 = derive2 { name="EpiNow2"; version="1.3.5"; sha256="02sp6bzpg2bf8ziyxrmrjjcw6pklcfyjxck0i7g81kawgq9nfnfj"; depends=[BH data_table futile_logger future future_apply ggplot2 lifecycle lubridate patchwork progressr purrr R_utils Rcpp RcppEigen RcppParallel rlang rstan rstantools runner scales StanHeaders truncnorm]; }; EpiReport = derive2 { name="EpiReport"; version="1.0.2"; sha256="1dh9rjdjgmwzvfslzgnmd37ipj7ydbn4pnngz4sw7nknqy7r4dpx"; depends=[dplyr flextable ggplot2 officer png tidyr tidyselect zoo]; }; - EpiSemble = derive2 { name="EpiSemble"; version="0.1.0"; sha256="1m0a6lxd47vv8m9q5j2fxabakhmxw2srknxkccxig2r9glizlsfi"; depends=[Biostrings caret devtools doParallel e1071 entropy foreach ftrCOOL gbm iterators party randomForest seqinr splitstackshape stringr tibble tidyverse]; }; EpiSignalDetection = derive2 { name="EpiSignalDetection"; version="0.1.2"; sha256="17mawnx3c87kgfa7aj42a7db9c1ciyxdfgka9sgx6lc0yw5249as"; depends=[dplyr ISOweek rmarkdown shiny surveillance]; }; EpiTest = derive2 { name="EpiTest"; version="1.0.0"; sha256="0fr6lkn1782x9q91y12idbzsh40xz5vzqfag259g6p8m3gyjiq25"; depends=[dplyr ggplot2 ggrepel magrittr MM4LMM purrr stringr]; }; EpistemicGameTheory = derive2 { name="EpistemicGameTheory"; version="0.1.2"; sha256="0b2gnrvhlsw85qv63ib32pj55l7w63wgvbrj5rb209g6h46fby8m"; depends=[lpSolve]; }; @@ -1531,7 +1554,7 @@ in with self; { EventDetectR = derive2 { name="EventDetectR"; version="0.3.5"; sha256="0wx3bcs8n95fmyc5vnlrwd75bzqqvy6czb9bsbp04g3770c5ja0r"; depends=[forecast ggplot2 gridExtra imputeTS neuralnet]; }; EventStudy = derive2 { name="EventStudy"; version="0.39.2"; sha256="1z12nrkmpsv5cgm97g36vbwfdf0m1abfmwfln4xhy38d0qs61zi9"; depends=[curl data_table dplyr ggplot2 httr jsonlite magrittr miniUI purrr RColorBrewer readr rlang rstudioapi scales shiny stringr testthat tidyr]; }; EventWinRatios = derive2 { name="EventWinRatios"; version="1.0.0"; sha256="1hsq4g7hh71lzxzkmhm15mk3xpxaq75rqhgslf4qif6x7pm0p859"; depends=[]; }; - EvidenceSynthesis = derive2 { name="EvidenceSynthesis"; version="0.4.1"; sha256="13db4129bfi3ys2f4bq28c9rhik8cw7vmh8dfkr0x1pqhz40mg5s"; depends=[BeastJar coda Cyclops EmpiricalCalibration ggplot2 gridExtra HDInterval meta rJava rlang survival]; }; + EvidenceSynthesis = derive2 { name="EvidenceSynthesis"; version="0.5.0"; sha256="0zyah27p1j7sxpcgpr05ws1whw7dd876nzygcvh5pyiikkahfmcm"; depends=[BeastJar coda Cyclops dplyr EmpiricalCalibration ggdist ggplot2 gridExtra HDInterval meta rJava rlang survival]; }; EviewsR = derive2 { name="EviewsR"; version="0.1.5"; sha256="0dybfkpg5zr6bh84dh7v4vyxk4xv09v9hv8ijxj0h41mi5zpqap9"; depends=[knitr magrittr xts zoo]; }; EvoPhylo = derive2 { name="EvoPhylo"; version="0.3.2"; sha256="1jgvvi355dxrjqniwcga7gzfj0jw3hgwbii2cv055rq9z5f442mr"; depends=[ape cluster deeptime devtools dplyr ggplot2 ggrepel ggtree patchwork Rtsne treeio unglue]; }; EvolutionaryGames = derive2 { name="EvolutionaryGames"; version="0.1.2"; sha256="0aaqd4q8imm2wgkgdpwwdl6nxgr3apgb3l24f2lwxgv2y045309d"; depends=[deSolve geometry ggplot2 interp MASS reshape2]; }; @@ -1564,7 +1587,7 @@ in with self; { ExposR = derive2 { name="ExposR"; version="1.0"; sha256="090mc6v67lmrpsf3lwrxs8ipyn8a3j03jcvfmz0iiidknp7swbgp"; depends=[raster rgdal]; }; ExtDist = derive2 { name="ExtDist"; version="0.7-1"; sha256="0a3ixd9z9ddig9nvd60a6gbmv2bf1irm6rjl39xivq01dmw7j07q"; depends=[numDeriv optimx]; }; ExtMallows = derive2 { name="ExtMallows"; version="0.1.0"; sha256="0903jslp74s1vzbklq88y2dm0dgkhd6g77b7aipxam98933k0hzz"; depends=[]; }; - ExtractTrainData = derive2 { name="ExtractTrainData"; version="9.1.5"; sha256="132f43mk2mjsfv9pfhj1371b4vxnqmnj5lf8xvfznf57xjna7wp1"; depends=[raster rgdal rgeos sp]; }; + ExtractTrainData = derive2 { name="ExtractTrainData"; version="9.1.6"; sha256="146jvjmdf4kw3d3dp2v6fb421kh8jggyg0lh4xg1ggjb4rphpjzd"; depends=[raster]; }; ExtremalDep = derive2 { name="ExtremalDep"; version="0.0.4-0"; sha256="12mhzbd3rp8ny00azqhk1cdhsz25ybn0wcffzp7qfm5wfnknapfi"; depends=[copula doParallel evd fda foreach gtools mvtnorm nloptr numDeriv quadprog sn sp]; }; ExtremeBounds = derive2 { name="ExtremeBounds"; version="0.1.6"; sha256="12bc4mmkmggvk3kfmz6nq13fa2470z0bx8smnvq9vf1ypdiiw85y"; depends=[Formula]; }; ExtremeRisks = derive2 { name="ExtremeRisks"; version="0.0.4"; sha256="1mvkrwyj9kwg35dzm9jzx311qqd4v3nnbrr6d64x476ni4pnrbl8"; depends=[copula evd mvtnorm plot3D pracma tmvtnorm]; }; @@ -1593,7 +1616,6 @@ in with self; { FCSlib = derive2 { name="FCSlib"; version="1.3.0"; sha256="1191ba6dwpakcdnbcq61zm5xq24isxjnn98nmvk67fpf1ycw70w9"; depends=[bitops fields stringr tiff]; }; FCVAR = derive2 { name="FCVAR"; version="0.1.4"; sha256="0762pkjh0yk96jlpqw4jv0andr0s0ylx14rh1igv9d0nagd237ba"; depends=[fracdist pracma]; }; FD = derive2 { name="FD"; version="1.0-12.1"; sha256="18i0wcmi2nslifi395ajkkfy3j6dsdbrj4nl5ni6ndnmxifg7d0f"; depends=[ade4 ape geometry vegan]; }; - FDRSeg = derive2 { name="FDRSeg"; version="1.0-3"; sha256="0dh6m5vlx664kryh56jzi3zxydjwa5217nhbwn6adp0q5qdh6d8a"; depends=[Rcpp stepR]; }; FDRestimation = derive2 { name="FDRestimation"; version="1.0.1"; sha256="083w50g8n03l0wigywm90xyp8xjxbsbbicv0a5g2wmbdd70m4nay"; depends=[Rdpack]; }; FDRsampsize = derive2 { name="FDRsampsize"; version="1.0"; sha256="0g8kawzyi9x5yndvh330wzqw6rvcnprwq56ngd0j6z51hvvw8qhw"; depends=[]; }; FDX = derive2 { name="FDX"; version="1.0.6"; sha256="16d2gwdiqv3i37ad33mvad8hsni0i7zf3y85z9sgxvabhs5igva1"; depends=[DiscreteFDR PoissonBinomial pracma Rcpp]; }; @@ -1606,21 +1628,21 @@ in with self; { FFD = derive2 { name="FFD"; version="1.0-9"; sha256="1478sxfz4cv43nmvhg0d0w82kmyr4rfhhrrlrq4aanbxnriggkxr"; depends=[R2HTML]; }; FFTrees = derive2 { name="FFTrees"; version="1.9.0"; sha256="1f300ciyq773zw50zd2hjighyjjy7b14j4h0ixz01gkxcq4pkd9c"; depends=[caret cli dplyr e1071 knitr magrittr progress randomForest rpart scales stringr testthat tibble tidyselect]; }; FGLMtrunc = derive2 { name="FGLMtrunc"; version="0.1.0"; sha256="15pj2dmgbjbx4xi585rqggnp05xzpg9pn2iy76ibgkdvjqknkwii"; depends=[foreach glmnet Rcpp RcppArmadillo splines2]; }; - FGSG = derive2 { name="FGSG"; version="1.0.2"; sha256="1r3sjhzf9gcnbcx6rqr1s555z8lcwm3fxl096md2jji336ijlk79"; depends=[]; }; FGalgorithm = derive2 { name="FGalgorithm"; version="1.0"; sha256="1dq6yyb3l6c9fzvk9gs6pb240xb5hvc6fh8p3qd3c91b3m289mcc"; depends=[]; }; FHDI = derive2 { name="FHDI"; version="1.4.1"; sha256="1n1rbrqdphp0prmkili6rnpxwdb7fgwsgncllr6yxlrkr5rb76pm"; depends=[]; }; FHtest = derive2 { name="FHtest"; version="1.5"; sha256="00mql2r4f5hxhdqf27q3x9s5rz2zzakx2myym97b1w1s7c5znl4q"; depends=[interval KMsurv MASS perm survival]; }; FI = derive2 { name="FI"; version="1.0"; sha256="17qzl8qvxklpqrzsmvw4wq3lyqz3zkidr7ihxc4vdzmmz69pyh2f"; depends=[]; }; - FIESTA = derive2 { name="FIESTA"; version="3.5.1"; sha256="19x70j2f6yld814mp8p47pin4y2x2znzrrpgp76zp1pqwq39ac05"; depends=[data_table DBI FIESTAutils largeList rgdal RSQLite sf sqldf]; }; - FIESTAutils = derive2 { name="FIESTAutils"; version="1.1.5"; sha256="1dqvb59jfbmv6p0qr6ica2mg9pg9dq4dgwx9dq2xc74j88vji2rz"; depends=[data_table DBI hbsae JoSAE largeList mase nlme RColorBrewer Rcpp rgdal RPostgreSQL RSQLite sae sf sp sqldf units xml2]; }; + FIESTA = derive2 { name="FIESTA"; version="3.5.3"; sha256="031mqn4v0w4nl3wp9ns9kr1z8vqg865zxqn2vmchalh4ain8m6bc"; depends=[data_table DBI FIESTAutils largeList rgdal RSQLite sf sqldf]; }; + FIESTAutils = derive2 { name="FIESTAutils"; version="1.1.7"; sha256="06j5la5ig28mh5vrk39q5f2i7gdhqskfsc5b14agmh12py1fh0zg"; depends=[data_table DBI gdalraster hbsae JoSAE mase nlme RColorBrewer Rcpp RPostgreSQL RSQLite sae sf sqldf terra units]; }; FILEST = derive2 { name="FILEST"; version="1.1.2"; sha256="0x95in9yad93j8kbxjykz04x756i1c1cq854c220cc0l3rm3npnl"; depends=[KRIS rARPACK]; }; FIT = derive2 { name="FIT"; version="0.0.6"; sha256="1nkjms9cvigc9sjha1krzhd3nmwsfh8pi0f1plf5k8zpb773zzb2"; depends=[gglasso MASS Rcpp RcppEigen XML]; }; FITSio = derive2 { name="FITSio"; version="2.1-6"; sha256="1qch6z9r8h95jijjdwsi81majgacl42ryzlkn0m1wifkly9mjjrb"; depends=[]; }; FKF = derive2 { name="FKF"; version="0.2.4"; sha256="0zbd8qdyck7cr4bwksgzxg63kl83a4m15n76rqk2yinyxpi0xazp"; depends=[]; }; FKF_SP = derive2 { name="FKF.SP"; version="0.3.1"; sha256="01vwb274nxnaljqw187vdf4w2j7m2b2ns3d47k0a2fg2v73abyjz"; depends=[mathjaxr]; }; - FKSUM = derive2 { name="FKSUM"; version="1.0.0"; sha256="1a0fk3k5mmkv26lmf14wiaj0hq19m92681a1p5ldnzpqr54w9igz"; depends=[MASS Matrix rARPACK Rcpp RcppArmadillo]; }; + FKSUM = derive2 { name="FKSUM"; version="1.0.1"; sha256="0ag8mzbjf2paslqspb18dk0ndqbp5rhmlmz9p2q2gxljfrdkzqkd"; depends=[MASS Matrix rARPACK Rcpp RcppArmadillo]; }; FLAME = derive2 { name="FLAME"; version="2.1.1"; sha256="013kxp6zjw8qzdq3750x109rhbmjn10q32wgxsh7ajiflwhj3f1i"; depends=[glmnet gmp]; }; FLLat = derive2 { name="FLLat"; version="1.2-1"; sha256="0306bpwp2az4x4m5sv88hlh7vs0y5isfby7lxrn2gjnk76gg6mw1"; depends=[gplots]; }; + FLORAL = derive2 { name="FLORAL"; version="0.1.0"; sha256="0g1619ql4kima0yxm4spk530363mnpm4jmsqrvfvpz6fdyrp1y34"; depends=[caret dplyr ggplot2 glmnet mvtnorm Rcpp RcppArmadillo RcppProgress reshape survcomp survival]; }; FLR = derive2 { name="FLR"; version="1.0"; sha256="0k50vi73qj7sjps0s6b2hq1cmpa4qr2vwkpd2wv2w1hhhrj8lm0n"; depends=[combinat]; }; FLSSS = derive2 { name="FLSSS"; version="9.1.1"; sha256="0k7lglmwrhzmdfkn6inx362y7knmgxlzfbli2n5ssznbblix7kwa"; depends=[Rcpp RcppParallel]; }; FLightR = derive2 { name="FLightR"; version="0.5.2"; sha256="0scbz1c3pm40v8h4h5qxckrpg2zixx29g9wwxiq06wlc7vajlh77"; depends=[bit CircStats circular fields ggmap ggplot2 ggsn maptools mgcv nlme RcppArmadillo rgdal rgeos sp truncnorm]; }; @@ -1660,7 +1682,7 @@ in with self; { FSSF = derive2 { name="FSSF"; version="0.1.1"; sha256="024g2rv64yqxmbbwrbkpkrzdfshl0n6jll6axsgsp4q4ia4r9401"; depends=[Rcpp RcppArmadillo]; }; FSTpackage = derive2 { name="FSTpackage"; version="0.1"; sha256="1fjqsl59fg4x9vkbv4b0qmfxlaa2q3rzpl40grv24yg6ixfagmdb"; depends=[CompQuadForm MASS Matrix mvtnorm SKAT]; }; FSelector = derive2 { name="FSelector"; version="0.33"; sha256="1lfra416pzpbipv9rm0qf7mq1zqr11hmas29q7qiwmzs5ihflmrx"; depends=[digest entropy randomForest RWeka]; }; - FSelectorRcpp = derive2 { name="FSelectorRcpp"; version="0.3.8"; sha256="17wcrsp2jlinj6nhnqba8iv7kk9m9hbpwv4vww5cdghflrn2zwj1"; depends=[BH foreach iterators Rcpp RcppArmadillo testthat]; }; + FSelectorRcpp = derive2 { name="FSelectorRcpp"; version="0.3.11"; sha256="008zc270injmjhr2zqs0jw21f7vrmmclzjnin9xsx8drfk8bhdvn"; depends=[BH foreach iterators Rcpp RcppArmadillo testthat]; }; FSinR = derive2 { name="FSinR"; version="2.0.5"; sha256="11ss38qpasbyym9hcfqmv254jvr8lzsw6r85dlm7xlnhfnxil59l"; depends=[caret class digest dplyr e1071 GA mlbench neuralnet prodlim purrr Rdpack rlang rpart tidyr]; }; FUNTA = derive2 { name="FUNTA"; version="0.1.0"; sha256="02yxz95s2hs26mfmgwhv5d54yyjz0aczjpnay8b4gpzbpd6aci61"; depends=[]; }; FWDselect = derive2 { name="FWDselect"; version="2.1.0"; sha256="0w0hkmhcz7h1lixk7p3yffbbalgxwh2lv463vqz361k80sri6wz7"; depends=[cvTools mgcv]; }; @@ -1698,15 +1720,15 @@ in with self; { FeatureHashing = derive2 { name="FeatureHashing"; version="0.9.1.5"; sha256="1hfa2p78a7hhn5p0xhsha6pl2aisvkjd791j61s73w99vbysmmpl"; depends=[BH digest magrittr Matrix Rcpp]; }; FeatureImpCluster = derive2 { name="FeatureImpCluster"; version="0.1.5"; sha256="1ifxw6rd870g258fkyyy3mhghxm7486nvgnp3lh5ih2i1v34dgig"; depends=[data_table ggplot2]; }; FeatureTerminatoR = derive2 { name="FeatureTerminatoR"; version="1.0.0"; sha256="036ip8jm4d5ybyqmvrnjqp4hl8gsmd346737ghipnmmyaml9xfs5"; depends=[caret dplyr e1071 ggplot2 lattice randomForest tibble]; }; - FedData = derive2 { name="FedData"; version="3.0.3"; sha256="0wd1ri4rg3r2mfpspjrd8h9yd2lgq9ccppgs4vj26bg4aq8365d5"; depends=[curl data_table dplyr httr igraph jsonlite lifecycle lubridate magrittr progress purrr raster readr sf sp stringr terra tibble tidyr xml2]; }; + FedData = derive2 { name="FedData"; version="3.0.4"; sha256="0qwfayp99nngwjl043y1snfsljnvm1vgdl6vd04hinr0gsrc330m"; depends=[curl data_table dplyr httr igraph jsonlite lifecycle lubridate magrittr progress purrr raster readr sf sp stringr terra tibble tidyr xml2]; }; FeedbackTS = derive2 { name="FeedbackTS"; version="1.5"; sha256="120labhmisw1x1bq8c4bl6l14vayvb9xcm6jsj1awacypgrr2ar2"; depends=[automap gstat mapdata maps proj4 sp]; }; FertBoot = derive2 { name="FertBoot"; version="0.5.0"; sha256="168xfxpb43brfnp6c6b4chhpzb9z0aiqa6fawc8m09an5ggh05jp"; depends=[nls_multstart simpleboot]; }; FertNet = derive2 { name="FertNet"; version="0.1.1"; sha256="1hhhsiva6nqqyjimmla2s4iv2lm3j20m55d7bwm8zr79lnj72nj9"; depends=[haven]; }; Fgmutils = derive2 { name="Fgmutils"; version="0.9.5"; sha256="05n8lvx3cs1ckliaj7ni2rbfcrdl7d0pzf9bkwlyd1779h684cxz"; depends=[data_table devEMF ggplot2 gridExtra plyr png sqldf stringr]; }; FiRE = derive2 { name="FiRE"; version="1.0.1"; sha256="08xs4w7d3w4zrymq0sjpz34hmsd4lsd5989r660qdpg3ybpqx8lj"; depends=[BH Rcpp]; }; FiSh = derive2 { name="FiSh"; version="1.1"; sha256="1fcs2y3diszypv7sr4vl75wizcxv0na0pqflmlrizs2w7kyw51p6"; depends=[fda_usc KernSmooth]; }; - FielDHub = derive2 { name="FielDHub"; version="1.2.1"; sha256="0ii6a1r3bfx9i8qvd30hbycwhfrm71177s0kivly9yhdvxpkpf2s"; depends=[blocksdesign config desplot dplyr DT ggplot2 golem htmltools magrittr numbers plotly shiny shinyalert shinycssloaders shinyjqui shinyjs shinythemes turner viridis]; }; - FieldSimR = derive2 { name="FieldSimR"; version="1.0.0"; sha256="01viz8ps7gabm7vdas50plk7vz8903kpk9g9al050bb56081qnri"; depends=[fields interp matrixcalc mbend]; }; + FielDHub = derive2 { name="FielDHub"; version="1.3.1"; sha256="1kmzrf73a72sc96y5pv51n02lj98qgxv31yfsj09ls2z4fsh536v"; depends=[blocksdesign config desplot dplyr DT ggplot2 golem htmltools magrittr numbers plotly shiny shinyalert shinycssloaders shinyjqui shinyjs shinythemes turner viridis]; }; + FieldSimR = derive2 { name="FieldSimR"; version="1.1.0"; sha256="10cnyig18gs97mmnl0bj1i5j2fdazynfr25c5cia9prcl01a9q0f"; depends=[ggplot2 interp lattice matrixcalc mbend]; }; FinAna = derive2 { name="FinAna"; version="0.1.2"; sha256="09svg5z52vv90ih85awgh6ns3pqi789qjm2wi1gb9hbg9v5g7pdv"; depends=[]; }; FinAsym = derive2 { name="FinAsym"; version="1.0"; sha256="0v15ydz4sq9djwcdcfp90mk8l951rry7h91d7asgg53mddbxjj6f"; depends=[]; }; FinCal = derive2 { name="FinCal"; version="0.6.3"; sha256="1clvnvhpf2krrf8flhmdxmys6ym3xw3v4v07kk1if4xb0dfk9wgy"; depends=[ggplot2 RCurl reshape2]; }; @@ -1737,7 +1759,7 @@ in with self; { FlowScreen = derive2 { name="FlowScreen"; version="1.2.6"; sha256="1s9xyrvfsgrl2zxm2an5qj3rs1qx7v7j8wc83jzl28pkwa5xr351"; depends=[changepoint evir zyp]; }; FluMoDL = derive2 { name="FluMoDL"; version="0.0.3"; sha256="0vp3w6hpph6svz8940w9yk9c5iv4n9mj94f9si1ks0xjbi948rqd"; depends=[dlnm mvmeta tsModel]; }; FlyingR = derive2 { name="FlyingR"; version="0.2.2"; sha256="08jyp4hfb9pydicx4i6vgi94p6pykyi545w8svhar2fwmn1ik955"; depends=[kableExtra knitr Rcpp rmarkdown]; }; - FoReco = derive2 { name="FoReco"; version="0.2.5"; sha256="1r4rgyi65wbbdlyz18hdfixww98wynf1yljq5a8wajpc0qqp8m9g"; depends=[cli corpcor mathjaxr Matrix osqp]; }; + FoReco = derive2 { name="FoReco"; version="0.2.6"; sha256="07ivfjs836g3k13kfv188lxv300n43vczmkcapxnwiii643y1kw8"; depends=[cli corpcor mathjaxr Matrix osqp]; }; ForIT = derive2 { name="ForIT"; version="2.0.1"; sha256="0rpnx1wa98gjdyb21k21i3p73xxb5wlsxd5rig0qygf4wnrwk828"; depends=[dplyr ggplot2 magrittr metR purrr RColorBrewer rlang tibble tidyr]; }; ForagingOrg = derive2 { name="ForagingOrg"; version="0.1.0"; sha256="0jsji653xwnmsa1j1h6da99f48kla9yk58z05za7bwk1qw9rbi70"; depends=[PairViz TSP]; }; ForeCA = derive2 { name="ForeCA"; version="0.2.7"; sha256="1falhz9v0z76h60gz66rh9wvk3jsjv8fvbkhkx9jmzbrkla397cd"; depends=[astsa MASS reshape2]; }; @@ -1755,7 +1777,7 @@ in with self; { FourScores = derive2 { name="FourScores"; version="1.5.1"; sha256="1la9d1hfcmi0zg58yl0a7nj36giagh0fwrc7wxyqdq0c7zf1hfzq"; depends=[]; }; FourWayHMM = derive2 { name="FourWayHMM"; version="1.0.0"; sha256="0zi42d214dq70ypgj8g57fwjbqfih4z0956njpj2739aqsnjq5v4"; depends=[data_table doSNOW foreach LaplacesDemon mclust snow tensor tidyr withr]; }; FourgameteP = derive2 { name="FourgameteP"; version="0.1.0"; sha256="15yn47737768fkjjv8ykc9lw7x58pq44k90d9d4c9hp20zw5f3by"; depends=[]; }; - FrF2 = derive2 { name="FrF2"; version="2.2-3"; sha256="1ra7gckbr786fcvvf3sn0n5yajblqfs1xbwcph5v0f6vk2lh883s"; depends=[DoE_base igraph scatterplot3d sfsmisc]; }; + FrF2 = derive2 { name="FrF2"; version="2.3"; sha256="09ip8nrz7flrlk35x6yinfxchjs4g389f2yfmx5dmsi6s73r8gqm"; depends=[DoE_base igraph scatterplot3d sfsmisc]; }; FrF2_catlg128 = derive2 { name="FrF2.catlg128"; version="1.2-2"; sha256="0r5v3922gsrsyrdin5dwdygnj9i23gwa67p7kll6ac6xxp8gig4w"; depends=[FrF2]; }; FracKrigingR = derive2 { name="FracKrigingR"; version="1.0.0"; sha256="08ai69wnpa4l1gpmgrs9c9ad9h56h0x55v3gnbci30yxkivbnvxw"; depends=[clusterGeneration psych]; }; FractalParameterEstimation = derive2 { name="FractalParameterEstimation"; version="1.1.2"; sha256="16xm2g723dm1n1h6as6yvy92sigzhj31f269g5rrzqjcd4d5m8an"; depends=[]; }; @@ -1765,7 +1787,7 @@ in with self; { FreqProf = derive2 { name="FreqProf"; version="0.0.1"; sha256="1yqn2435l2sghfcv5mma0rv9yqvpa69z8cqqsjlrlbih9gib82d4"; depends=[ggplot2 reshape2 shiny]; }; Fstability = derive2 { name="Fstability"; version="0.1.2"; sha256="0kscdmrs5namvhi112b47c811w0bg9s3xg48mfa566pxwxz1nv45"; depends=[]; }; FunCC = derive2 { name="FunCC"; version="1.0"; sha256="0n8fnrq3grsxxcz1841d3d643nyrwc7y15na1205zxq6rmdjx7wa"; depends=[biclust ggplot2 narray RColorBrewer reshape]; }; - FunChisq = derive2 { name="FunChisq"; version="2.5.2"; sha256="0ds8gx86bi882nmdlivvigr53kq1dcq4cqj03szg44j8p6q3vhkx"; depends=[BH dqrng Rcpp Rdpack]; }; + FunChisq = derive2 { name="FunChisq"; version="2.5.3"; sha256="091arn9d42zsa7ky21k77ak0qirz0x7nai72s54mi70nyjn173dk"; depends=[BH dqrng Rcpp Rdpack]; }; FunWithNumbers = derive2 { name="FunWithNumbers"; version="1.1"; sha256="16w5hna0dm89alkch9wf7n8mqqz75scwg0g84qf57bl6sihnp750"; depends=[gmp Rmpfr]; }; FuncDiv = derive2 { name="FuncDiv"; version="1.0.0"; sha256="19jfxy9mhhsfr2mf3l9d125swy20qcyxfqd2fk9m6cly9ajzggza"; depends=[ape collapse data_table parallelDist Rcpp RcppArmadillo RcppParallel RcppXPtrUtils]; }; FuncMap = derive2 { name="FuncMap"; version="1.0.10"; sha256="0iaay6qz9a2s77xjfpp7wm37y7xwnvmlw6s5k5riccmqzc6dcjs7"; depends=[mvbutils]; }; @@ -1806,7 +1828,7 @@ in with self; { GARCOM = derive2 { name="GARCOM"; version="1.2.2"; sha256="0fz8i4zidw47p6zpb83988k6rwb12scv90n1lvy2jb1fq29zp63q"; depends=[data_table vcfR]; }; GAS = derive2 { name="GAS"; version="0.3.4"; sha256="014b2y9qrv44j5v559bnw7yiacs9aarsgpbrj3clxm4n0srhv843"; depends=[cubature MASS numDeriv Rcpp RcppArmadillo Rsolnp xts zoo]; }; GAabbreviate = derive2 { name="GAabbreviate"; version="1.3"; sha256="0cq6bg3w0ji44rsz1p4j17fk0jg8rafbjixwi3fjdndc3yd874r5"; depends=[GA psych]; }; - GAparsimony = derive2 { name="GAparsimony"; version="0.9.4"; sha256="1p1s5q1basy9v3jy1qxpx5g8mzpkwdfarxmmf7s06c6wq0dl9vp8"; depends=[foreach iterators]; }; + GAparsimony = derive2 { name="GAparsimony"; version="0.9.5"; sha256="1l3x6m7phbin6ba6rclljzym9zgx9nskz65ggkg0ij24pz5h7y51"; depends=[foreach iterators]; }; GB2 = derive2 { name="GB2"; version="2.1.1"; sha256="05hvyyjlxckhgqipssb7qkfqv3dq202jpjyp9y7hgmka0vsix2yr"; depends=[cubature hypergeo laeken numDeriv survey]; }; GB2group = derive2 { name="GB2group"; version="0.3.0"; sha256="1dbyc7izyggfrsq2gj7rwff5qjyy6bx6ip09xvbj73xqczv8fkcd"; depends=[GB2 ineq minpack_lm numDeriv]; }; GBJ = derive2 { name="GBJ"; version="0.5.3"; sha256="12lsddkcxz37hn2fvjq158wb1bc6b3hx6wj8q8nj21zpmyl3n2qh"; depends=[BH mvtnorm Rcpp SKAT]; }; @@ -1822,7 +1844,7 @@ in with self; { GDINA = derive2 { name="GDINA"; version="2.9.3"; sha256="0bwg9sfsqs5nsqwhjnbb631fbhj0mx2dc4c185qkym9cjb5lfkm9"; depends=[alabama ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; GDPuc = derive2 { name="GDPuc"; version="0.10.0"; sha256="1a7854ycwcaqlqvyv9lgcjljbwi4a2p0cyfchkcdnkfh60b3gn0i"; depends=[cli crayon dplyr glue lifecycle magrittr rlang tibble tidyselect withr]; }; GDSARM = derive2 { name="GDSARM"; version="0.1.1"; sha256="0id3z450prnrd6rdcv4xaizmjkdhjv8vdbpbnpniaml66kqsadvh"; depends=[lpSolve]; }; - GE = derive2 { name="GE"; version="0.3.5"; sha256="166zl97j4zlrq1s7h69v25gjv7s13mgix7s75hhjwzvi8kaby2gk"; depends=[CGE data_tree DiagrammeR]; }; + GE = derive2 { name="GE"; version="0.3.6"; sha256="0n6mzgamw0alkjlyzh5ff1vhbgammf2782h9p4vaclqzbglzipj7"; depends=[CGE data_tree DiagrammeR]; }; GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; }; GEEmediate = derive2 { name="GEEmediate"; version="1.1.4"; sha256="1x0r2qcyd9hrhkws5zi0pjdc40w8wal3jpvvajj3cr8c1r8dpfzz"; depends=[gee]; }; GEInfo = derive2 { name="GEInfo"; version="1.0"; sha256="08ha9w3c64x9ib2fbh4djbhg7y6lykibx93mbm7i3gdvpajqk0jx"; depends=[dplyr glmnet MASS pheatmap rvest]; }; @@ -1834,7 +1856,7 @@ in with self; { GENMETA = derive2 { name="GENMETA"; version="0.2.0"; sha256="11wlcnj919jws62ngf29gr2p0shdlm917hkz5iwfss1m8gcbfjnl"; depends=[magic MASS Matrix pracma]; }; GEOmap = derive2 { name="GEOmap"; version="2.5-0"; sha256="14qhvgh7jcrfknhihsnsvz6b7dz796v659ksqqmn6c3kva761rc2"; depends=[fields MBA RPMG splancs]; }; GESE = derive2 { name="GESE"; version="2.0.1"; sha256="0h3s2sbnv5wilr2mj6bnl2892p16pxrs341gg6jql1a540p669sk"; depends=[kinship2]; }; - GET = derive2 { name="GET"; version="0.3-2"; sha256="0n0frlr4nxl62ffh8mir2pwgkp5d1bkazsrff0v6k0amibqknlly"; depends=[cluster ggplot2 gridExtra viridisLite]; }; + GET = derive2 { name="GET"; version="0.4"; sha256="0fvssxwwcdaqa6hir7z4cp4yabrc1afzyc3ib4nqdv6mpkhmzdxq"; depends=[cluster ggplot2 gridExtra viridisLite]; }; GETdesigns = derive2 { name="GETdesigns"; version="1.1.0"; sha256="1rc8vcpfv240qmg3xgqx1rlygw7l3hjkh1napj3pc9j6ffpyyk2a"; depends=[]; }; GEVACO = derive2 { name="GEVACO"; version="1.0.1"; sha256="0zkan4w96g3qc1hgla90mh32b55bk58gax095p4nxrfi46f8w3rf"; depends=[nlme RLRsim]; }; GEVcdn = derive2 { name="GEVcdn"; version="1.1.6-2"; sha256="0vmm9fhyrk5m0zwy7fpq5j9zinws0gn2saf4j9plqc9gj1gphjn0"; depends=[]; }; @@ -1849,11 +1871,11 @@ in with self; { GGClassification = derive2 { name="GGClassification"; version="0.1"; sha256="03wis5ng2mnfhp33xrag8xbmvjagzr1909a6x94wv7s2spji00rp"; depends=[Rcpp RcppEigen]; }; GGEBiplots = derive2 { name="GGEBiplots"; version="0.1.3"; sha256="0h7irlmq283bx1hlqyv8bi228kd6xkc7sdw6nq18v3s7b0a9bhcm"; depends=[ggforce ggplot2 scales]; }; GGIR = derive2 { name="GGIR"; version="2.9-0"; sha256="0bsxwcj7y4nlpw24qh85i8y4m4d7xdyl7qpks4lwz0zbdhv6pwfg"; depends=[data_table doParallel foreach ineq signal tuneR unisensR zoo]; }; - GGIRread = derive2 { name="GGIRread"; version="0.2.6"; sha256="10zgdac4vjf63s3d210v6b5lgfwj7an6xfjr4m1rfg7cm5qr2pps"; depends=[bitops matlab Rcpp tuneR]; }; + GGIRread = derive2 { name="GGIRread"; version="0.2.8"; sha256="16fxvwybcg63a9f0jvw5xyxg19ykaprxsq4cpqz4ja0gyrfz8gd8"; depends=[bitops matlab Rcpp tuneR]; }; GGMncv = derive2 { name="GGMncv"; version="2.1.1"; sha256="0lih9dyb5aqrawhiy2vhv63b132hhzq6zq0x6rbrhy8kbkldhigr"; depends=[GGally ggplot2 glassoFast MASS mathjaxr network numDeriv pbapply Rcpp RcppArmadillo Rdpack reshape sna]; }; GGMnonreg = derive2 { name="GGMnonreg"; version="1.0.0"; sha256="1bhqk172ddc7xq1hqj1i6q8np6jvmf2xypvd8kp3w1bcsafsbms8"; depends=[bestglm corpcor doParallel foreach GGally GGMncv ggplot2 MASS Matrix network poibin psych Rdpack sna]; }; GGMridge = derive2 { name="GGMridge"; version="1.2"; sha256="1bv6k9krkb6mx6p4kx24cgyix1jnpk0257a59i59h7chij9y7nf7"; depends=[MASS mvtnorm]; }; - GGMselect = derive2 { name="GGMselect"; version="0.1-12.5"; sha256="1lg42rra92f0n7w6mgg6sfhk9qk06j7bf56gifff5spjv9mmj6zc"; depends=[gtools lars mvtnorm]; }; + GGMselect = derive2 { name="GGMselect"; version="0.1-12.6"; sha256="1xdkpiwl80aq51f2010qq14h72p42agjklbiwrad8s43769yw34n"; depends=[gtools lars mvtnorm]; }; GGRidge = derive2 { name="GGRidge"; version="0.1.0"; sha256="1q5lgnzbhczfylkj2p07r2a088i0d2xgmggilwlg6b0gc9qg7xf8"; depends=[CVglasso graph gRbase MASS]; }; GGUM = derive2 { name="GGUM"; version="0.4-3"; sha256="1r4ijkc5xrlp2sq4jnhcrzzmkzilc4lbz3q5zc0kgcz348hf1a7w"; depends=[abind psych Rdpack viridis xlsx]; }; GGally = derive2 { name="GGally"; version="2.1.2"; sha256="1r98zgh2grn8330cf26r1c20gl131zm778szvn5wj6q6pwv2yd9h"; depends=[dplyr forcats ggplot2 gtable lifecycle plyr progress RColorBrewer reshape rlang scales tidyr]; }; @@ -1864,16 +1886,17 @@ in with self; { GIFTr = derive2 { name="GIFTr"; version="0.1.0"; sha256="101vr2qasky8hnxp5i3lhlnymwzciypqwvhpl6mrr0r0czgpcz2f"; depends=[glue stringr]; }; GIGrvg = derive2 { name="GIGrvg"; version="0.8"; sha256="09n0nhsv3v61asfzghzxa9sr3ryl25mlvj73gk9ql9wlrynd3wrl"; depends=[]; }; GISSB = derive2 { name="GISSB"; version="1.1"; sha256="0clhch4xvklrmk7h6b7vz83zzlj5r1lzrszy73agmpdbs5cax5sy"; depends=[cppRouting dplyr here httr igraph leaflet magrittr nabor purrr RCurl reshape2 rlang sf stringr tibble tidygraph tidyselect]; }; - GInSARCorW = derive2 { name="GInSARCorW"; version="1.15.6"; sha256="0rpq8ng9skxg6qzhainsc9jkznql6glq65a1bdbrkc6pwx3pc7lc"; depends=[circular raster rgdal rgeos sp]; }; + GInSARCorW = derive2 { name="GInSARCorW"; version="1.15.8"; sha256="0hxcaixr8f3pq4kpzhfrbm7blvkq6sk3pz63bfjy6n1lhlashb13"; depends=[circular raster sp]; }; GIplot = derive2 { name="GIplot"; version="0.1.0"; sha256="1asyd4f76xg84jnwa8kxcw5z6ch3kpy0p7yigmyga94908gylpxj"; depends=[]; }; GJRM = derive2 { name="GJRM"; version="0.2-6.1"; sha256="03awbjalklp7fvp7p95a3pkz1d2indw2na8i2pa353inmf0a1jyb"; depends=[copula distrEx evd gamlss_dist ggplot2 ismev magic matrixStats mgcv mnormt numDeriv psych Rmpfr scam survey survival trust VGAM VineCopula]; }; GK2011 = derive2 { name="GK2011"; version="0.1.3"; sha256="13vafhbgcsj485f12qv962y07v3hil3pla51vkl2b030amzy86jv"; depends=[]; }; - GLCMTextures = derive2 { name="GLCMTextures"; version="0.3.7"; sha256="0harr9lqmx960mgxlcrndsvckgjzamf6nfw6lbki848yrx1aa6mv"; depends=[raster Rcpp RcppArmadillo terra]; }; + GLCMTextures = derive2 { name="GLCMTextures"; version="0.3.8"; sha256="1qh0djskfc6407527kdxzi0yfrnqn4kjf8723gp92kq1kaqjishj"; depends=[raster Rcpp RcppArmadillo terra]; }; GLDEX = derive2 { name="GLDEX"; version="2.0.0.9.2"; sha256="0pikq5aywky77sbbkga7s0ww3ywlarx336rgpyiigr72fmjvb289"; depends=[cluster spacefillr]; }; GLDreg = derive2 { name="GLDreg"; version="1.1.0"; sha256="1ls9jfk3vp5r1d90vzkni0fcxlkn70i2pszw1pxnscxxhz112dq0"; depends=[ddst GLDEX]; }; GLIDE = derive2 { name="GLIDE"; version="1.0.5"; sha256="01164gh0j4g0hambiq92bxrd3j3z2psg19faj32mvhmn4c3k2m8i"; depends=[doParallel foreach MASS]; }; GLMMRR = derive2 { name="GLMMRR"; version="0.5.0"; sha256="072zwi1rs6d84iszn09v5g19bkpla19nfqk4pq40ad8368zkbhcm"; depends=[lattice lme4 RColorBrewer]; }; GLMMadaptive = derive2 { name="GLMMadaptive"; version="0.8-8"; sha256="1ji8xfi1h2vdj4jshv550ga9znzaczjypy71x71qafm90wkrni00"; depends=[MASS matrixStats nlme]; }; + GLMMselect = derive2 { name="GLMMselect"; version="1.0.0"; sha256="0ad5swpmh05v8mnj942m4wz32gj5k0vrd43shhxm90mlh0ff2zyl"; depends=[]; }; GLMaSPU = derive2 { name="GLMaSPU"; version="1.0"; sha256="0zx2bza5v5cfp9v7hf42s57522b6prawcwl77aa3kvjcnb0ish6g"; depends=[MASS mnormt mvtnorm Rcpp RcppArmadillo]; }; GLMcat = derive2 { name="GLMcat"; version="0.2.5"; sha256="1ycz0k25ninsvl5c4ql8s1y2jp8x1jdl58kph49rzisdzz4ma725"; depends=[BH ordinal Rcpp RcppEigen stringr]; }; GLMpack = derive2 { name="GLMpack"; version="0.1.0"; sha256="15bpw42y999ljdw8ka2ysrrm0y73xz37wwi3j67i01wafipq82xy"; depends=[AER censReg effects foreign lme4 lmtest MASS Matrix nnet pBrackets plm pscl sandwich]; }; @@ -1885,11 +1908,12 @@ in with self; { GMDH2 = derive2 { name="GMDH2"; version="1.8"; sha256="1cqpwnncxir9gc6vwzclm0av9hzd2a74xvl3w73dpzafvzkg4x67"; depends=[e1071 glmnet magrittr MASS nnet plotly randomForest xtable]; }; GMDHreg = derive2 { name="GMDHreg"; version="0.2.2"; sha256="1q583l0nsd4x1zm4fhh1q3kw3rh1v1vlaczkc59kzfs1h0l83hp2"; depends=[]; }; GMKMcharlie = derive2 { name="GMKMcharlie"; version="1.1.5"; sha256="1c7zb83p4r46h42xsjaj3c8zrnhrrhvggz4nqmasp52fh6gdarz6"; depends=[Rcpp RcppArmadillo RcppParallel]; }; + GMMAT = derive2 { name="GMMAT"; version="1.4.0"; sha256="0gb6h5qkx708l3dnmvnsl6nbdqi6szimr5227yhi7ysahy71fv1r"; depends=[CompQuadForm data_table foreach Matrix Rcpp RcppArmadillo SeqArray SeqVarTools]; }; GMMBoost = derive2 { name="GMMBoost"; version="1.1.3"; sha256="0p9jnwjc8g83qsxkjz9lhaip1hkpdg6n4fdpz34b96vb7qhzrrqc"; depends=[magic minqa]; }; GMPro = derive2 { name="GMPro"; version="0.1.0"; sha256="0xhja221wz89cm76qbq01nqz73jx7d2zx9i2ky5vd31zkspmlqkm"; depends=[combinat igraph transport]; }; GMSE = derive2 { name="GMSE"; version="1.0.0.2"; sha256="08564m2j6xlrh658syczxcl0149g54wkqc6irgsafqxvl3fdjs52"; depends=[shiny shinycssloaders shinydashboard shinyjs]; }; GMSimpute = derive2 { name="GMSimpute"; version="0.0.1.0"; sha256="1hmn5ss81df9j9ibgibs95j98irqzif94vq0c861mq4a65y59fcp"; depends=[ggplot2 glmnet reshape2]; }; - GNAR = derive2 { name="GNAR"; version="1.1.1"; sha256="1ryiv671nhhhif8xqj8lx6jfh503ayqvldnmzkwfma2ww1518y08"; depends=[igraph wordcloud]; }; + GNAR = derive2 { name="GNAR"; version="1.1.2"; sha256="0a9xpdg1g1r1l4mga85bkyxqfrpac48f5bvi60bin7s46y2c5jam"; depends=[igraph matrixcalc wordcloud]; }; GNE = derive2 { name="GNE"; version="0.99-5"; sha256="0a796zppqvjgymh03xh7wdb26m0ir2gsavm37278liaj3nzk2jkz"; depends=[alabama BB nleqslv SQUAREM]; }; GNRS = derive2 { name="GNRS"; version="0.3.4"; sha256="0aq6rq5b3jq9yj8hhyxjin38f2008qsix4zm20nyhqx0k0hizql1"; depends=[httr jsonlite RCurl]; }; GNSSseg = derive2 { name="GNSSseg"; version="6.0"; sha256="1zkj98xh63wfyyygg2ahq3m54xlvi3x9sy0rhcn2dlfvbxaxfl4k"; depends=[capushe robustbase]; }; @@ -1913,6 +1937,7 @@ in with self; { GPRMortality = derive2 { name="GPRMortality"; version="0.1.0"; sha256="0k5pfyl7r5vsac927aqx19lz93vyk5l3ydqkazn2hwwaw1lh2wav"; depends=[rstan]; }; GPSCDF = derive2 { name="GPSCDF"; version="0.1.1"; sha256="1l50a6p81lykiqlqiwb6kix5s6wzwdi8vddqhl418dlwlsh83ybf"; depends=[dplyr MASS nbpMatching nnet survival]; }; GPSeqClus = derive2 { name="GPSeqClus"; version="1.3.0"; sha256="0nkhpa3wldyimhzzsfhqrwkj62rr5xfb88zcjhg1dvg5fbvinigd"; depends=[geosphere htmlwidgets leaflet leaflet_extras plotKML plyr purrr rgdal sp spacetime suncalc]; }; + GPUmatrix = derive2 { name="GPUmatrix"; version="0.1.0"; sha256="1zl8rbb50dlsnyym11p6k2l2ybq9lz6kbzb5b0bjsbcvigcvckwp"; depends=[]; }; GPareto = derive2 { name="GPareto"; version="1.1.7"; sha256="05hb6x3hh7h3dy9750gryk3f169b2shhl93gkb370g7h9y87vmi1"; depends=[DiceDesign DiceKriging emoa KrigInv ks MASS pbivnorm pso randtoolbox Rcpp rgenoud rgl]; }; GPfit = derive2 { name="GPfit"; version="1.0-8"; sha256="05mpiyi2vxv0wqp422n1mnxa8msc4daq40cwpnpngbcwqhlgqkby"; depends=[lattice lhs]; }; GPvam = derive2 { name="GPvam"; version="3.0-9"; sha256="15y17z1l23n7kyrgn3q8br70ym1jdqkkysrhkal2flci70b1c7ij"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; @@ -1925,6 +1950,7 @@ in with self; { GRNNs = derive2 { name="GRNNs"; version="0.1.0"; sha256="1c36km6g4fcsvpirlh88fl3zq9pdpdyfilahfx949salj0gnqsn6"; depends=[cvTools rdist scales vegan]; }; GROAN = derive2 { name="GROAN"; version="1.3.1"; sha256="1g6n00gnz47w06wkx0sha97qxxyhc8n2y8zaagqx7krgzx7lkha3"; depends=[plyr rrBLUP]; }; GRS_test = derive2 { name="GRS.test"; version="1.2"; sha256="1g560n81kqf81n1z3s4yxl24r386q21avjknz6msqzp4xhxhr4l6"; depends=[]; }; + GRShiny = derive2 { name="GRShiny"; version="1.0.0"; sha256="0i8qcqk97lm2pwjl2s6lfa4p6c69p8xl3q88bpn706ib687f5j3x"; depends=[bslib data_table dplyr DT flextable ggplot2 gt lavaan magrittr MASS mirt officer openxlsx purrr readr sass shiny shinyWidgets sirt stringr tidyr]; }; GRSxE = derive2 { name="GRSxE"; version="1.0.0"; sha256="1mfsfkfgz12vm99jsln8fimmy852dx20xfnj6ibqrjhjpniv8x5d"; depends=[glmnet ranger]; }; GRTo = derive2 { name="GRTo"; version="1.3"; sha256="1xkcx2agvrpfnmplgaqx70vz303v8rhwnxdyr4hmdlf4h92lbv8i"; depends=[bootstrap]; }; GRelevance = derive2 { name="GRelevance"; version="1.0"; sha256="1v1zcsk563cs6c1xn1qzm4v3yydmpr59hkz40xafkq4jbq9k2s9g"; depends=[MASS mvtnorm philentropy]; }; @@ -1951,7 +1977,7 @@ in with self; { GWASExactHW = derive2 { name="GWASExactHW"; version="1.01"; sha256="19qmk8h7kxmn9kzw0x4xns5p3qqz27xkqq4q6zmh4jzizd0fsl78"; depends=[]; }; GWASbyCluster = derive2 { name="GWASbyCluster"; version="0.1.7"; sha256="0ivlkxbh8m23vbnjfmhk0vfczd5b8lzy9w4gm1m6jpvdm40kn70x"; depends=[Biobase limma rootSolve snpStats]; }; GWASinlps = derive2 { name="GWASinlps"; version="2.2"; sha256="1q5gaam554r2wxwsdgxjx6hngs2q850hbrkz8y5248i46pz16pcc"; depends=[fastglm horseshoe mombf Rcpp RcppArmadillo survival]; }; - GWASinspector = derive2 { name="GWASinspector"; version="1.6.1"; sha256="0nymvx6a8wys1aby2ffmmflrab1gp7ig443b24y1j2ccpwkjvxl2"; depends=[data_table futile_logger ggplot2 gridExtra hash ini kableExtra knitr openxlsx R_utils rmarkdown RSQLite]; }; + GWASinspector = derive2 { name="GWASinspector"; version="1.6.4"; sha256="0nxh20gpgv5b2nkrczrcjknl9f531flw8fr9qiqd6ig5gxlcgs67"; depends=[data_table futile_logger ggplot2 gridExtra hash ini kableExtra knitr openxlsx R_utils rmarkdown RSQLite]; }; GWEX = derive2 { name="GWEX"; version="1.0.2"; sha256="0iykciifbskcrx1qv4874nxli1sq6nbmlfinq4ksir3p93y7ds87"; depends=[abind doParallel EnvStats fGarch foreach lmomco MASS mvtnorm nleqslv Renext]; }; GWI = derive2 { name="GWI"; version="1.0.2"; sha256="0gwbidvdzk7b1w880baa338h7cikvlzvqmbmdxca4r83jzzwxlj1"; depends=[]; }; GWLelast = derive2 { name="GWLelast"; version="1.2.2"; sha256="1nm4w5m4ca6npmpvh9nb0cnrbzlyv95nvvhgs3pqcrw4igagm4hj"; depends=[doParallel foreach geosphere glmnet sp spgwr]; }; @@ -1962,11 +1988,12 @@ in with self; { GWnnegPCA = derive2 { name="GWnnegPCA"; version="0.0.4"; sha256="1yinzlp22z9z5fk9f1nm14i408yfm5kfgkn3pqnh4bkghs569ivg"; depends=[geodist nsprcomp pracma sf sp spData]; }; GWpcor = derive2 { name="GWpcor"; version="0.1.7"; sha256="0q43673pmm2c6kss688fpz10b39y3jn1kblv13p8ky0bk82hmcvi"; depends=[corpcor doParallel dplyr foreach geodist pracma sf sp]; }; GWsignif = derive2 { name="GWsignif"; version="1.2"; sha256="0bss5s3ijnlckz44p7jj49bn2r8nwqckpzwzcv0vci915q8jfsj2"; depends=[]; }; + GaSP = derive2 { name="GaSP"; version="1.0.4"; sha256="14wjg5zgas6zj98qlwjdmr32byrn6bazg1dxpjh02n6md5dfysbp"; depends=[]; }; GameTheory = derive2 { name="GameTheory"; version="2.7"; sha256="0vb7sjia5s58gw9zpkzddps8knxvbrz7fbi3m6digl8bf5vwhxxw"; depends=[combinat gtools ineq kappalab lpSolveAPI]; }; GameTheoryAllocation = derive2 { name="GameTheoryAllocation"; version="1.0"; sha256="0733vmyr0d9scjd5ixpnggr548snd7nj70knf5hbzc59nmbc5y11"; depends=[e1071 lpSolveAPI]; }; Gammareg = derive2 { name="Gammareg"; version="3.0"; sha256="1wh5k3nazycki0h094m4d0nnign8yksgnrrnrm3yka1s7mqzv781"; depends=[]; }; GapAnalysis = derive2 { name="GapAnalysis"; version="1.0.2"; sha256="0ky1njrymh102dy7sna2cm5f5gyx4s7k77bnsdal1yndgw7ppqvx"; depends=[data_table fasterize geosphere raster rmarkdown sf sp tmap]; }; - GauPro = derive2 { name="GauPro"; version="0.2.8"; sha256="1z9ndkafn84nr7d8idpsaib8zpcf7588fh9pqmz2mr4ifd6igw71"; depends=[lbfgs R6 Rcpp RcppArmadillo]; }; + GauPro = derive2 { name="GauPro"; version="0.2.11"; sha256="011dw5fcpws0w05iyz5m1zfj1mj3ha1jnnky3pbi0d0n5jmx1h1h"; depends=[lbfgs R6 Rcpp RcppArmadillo]; }; GaussSuppression = derive2 { name="GaussSuppression"; version="0.6.0"; sha256="1zgg5x4whdzcrp1c6j18cmisw09r36qb3xknkxrnw9p0vrv3dx2m"; depends=[Matrix RegSDC SSBtools]; }; GaussianHMM1d = derive2 { name="GaussianHMM1d"; version="1.0.1"; sha256="1j1cwh0p7czy2l4qf6nymqcp8kkfaki0j2rj8p99nqn2vgc3vcax"; depends=[doParallel foreach]; }; GeDS = derive2 { name="GeDS"; version="0.1.3"; sha256="1ddq4hnyl3m3s4cchccxiqphi742ljcm86zqpa01a5nrjbnr87x6"; depends=[Matrix Rcpp Rmpfr]; }; @@ -1974,7 +2001,7 @@ in with self; { GeSciLiVis = derive2 { name="GeSciLiVis"; version="1.1.0"; sha256="1kx258kx77vl67hxvj9zml7capm75yncjs0478ckwjr6g69x1ka7"; depends=[biomaRt biomartr rentrez]; }; GenAlgo = derive2 { name="GenAlgo"; version="2.2.0"; sha256="1pihqxif2v62hwf5761fshyhigcjmlgbvp2j7immxlsysjfw5xgq"; depends=[ClassDiscovery MASS oompaBase]; }; GenBinomApps = derive2 { name="GenBinomApps"; version="1.2"; sha256="03pgzrj5d3cjhadv4f6an4vm90fj0wxcsi9lx7znrlrjp8qvyjvh"; depends=[]; }; - GenEst = derive2 { name="GenEst"; version="1.4.8"; sha256="0kz9n0af79k9f03jrmqbjbspwn87hpbf0jav3nafg8m3ynvzjb3m"; depends=[corpus DT gsl gtools hellno htmltools lubridate MASS matrixStats mvtnorm Rcpp shiny shinyjs survival]; }; + GenEst = derive2 { name="GenEst"; version="1.4.9"; sha256="0ifqzpqrc9bgg6sp8zx30lvcz9kcbzivw5sf8f3axnwzfia9x376"; depends=[DT gsl gtools hellno htmltools lubridate MASS matrixStats mvtnorm Rcpp shiny shinyjs survival]; }; GenMarkov = derive2 { name="GenMarkov"; version="0.1.0"; sha256="06bq43ry25g75qxlnrz02s393sv4r5v7m8gw0d96gpmldc76aax1"; depends=[alabama fastDummies Hmisc matrixcalc maxLik nnet]; }; GenOrd = derive2 { name="GenOrd"; version="1.4.0"; sha256="17mfrj1fwj8mri1w0bl2pw1rqriidmd67i7gpn9v56g9dzw5rzms"; depends=[MASS Matrix mvtnorm]; }; GenSA = derive2 { name="GenSA"; version="1.1.8"; sha256="05m2xjaf4202jzzn5l7i7k80kzr8vihv7jpw99c9ic5n3ra8fpip"; depends=[]; }; @@ -2007,11 +2034,11 @@ in with self; { GerminaR = derive2 { name="GerminaR"; version="2.1.4"; sha256="0f2dbq1adbd5p30kf9bi8qqk2s8da0p65i9a0igm16ckwpam7lkk"; depends=[agricolae dplyr DT ggplot2 purrr shiny tibble tidyr]; }; GetBCBData = derive2 { name="GetBCBData"; version="0.7.0"; sha256="0bc1ar1cx7vxvlld2dishi46a9bxs075vgby1xs8kbxlllknvcsi"; depends=[curl dplyr furrr future jsonlite memoise purrr stringr]; }; GetDFPData = derive2 { name="GetDFPData"; version="1.6"; sha256="1yxf1i5bipz16pbydl6qxlalh2zpdiigbxd1qczbjc1z78bl5727"; depends=[crayon curl dplyr lubridate readr reshape2 stringr tibble xlsx XML]; }; - GetDFPData2 = derive2 { name="GetDFPData2"; version="0.6.2"; sha256="1gn79q9zlx73mmy8q2sy8ah7bvhdns6z4ayhihnn090ch8v0pzdg"; depends=[dplyr lubridate magrittr memoise purrr RCurl readr rvest shiny stringr tidyr writexl xml2]; }; + GetDFPData2 = derive2 { name="GetDFPData2"; version="0.6.3"; sha256="1dc1ks9mrwc8sjmp6fh47hlhhfwvfign6jmf4cxik28q3253al01"; depends=[dplyr lubridate magrittr memoise purrr RCurl readr rvest shiny stringr tidyr writexl xml2]; }; GetFREData = derive2 { name="GetFREData"; version="0.8.1"; sha256="15rca6pfsx5hcl1lnz49904b2ps0312mwjv8d4f0g76jhkvqfvss"; depends=[dplyr GetDFPData2 lubridate magrittr purrr readr rvest stringr XML xml2]; }; GetLattesData = derive2 { name="GetLattesData"; version="1.4.2"; sha256="13g54m19lw9nw1a8f45fysxzgf66g94mrgvyqrhx6mfdw6lkig72"; depends=[curl dplyr readr stringdist stringr XML]; }; GetQuandlData = derive2 { name="GetQuandlData"; version="1.0.0"; sha256="0j5n2xbjk64nyfdpzphsiwa9k08rvgdfkzbfqahjdy11rk4x1fgi"; depends=[dplyr fs jsonlite memoise purrr readr]; }; - GetTDData = derive2 { name="GetTDData"; version="1.5.2"; sha256="1ablrimcfif3kkzkyw9m2wwb2y39yzgvi96i14n8j4ddwdkalbn5"; depends=[bizdays curl dplyr fs readxl rvest stringr tidyr xml2]; }; + GetTDData = derive2 { name="GetTDData"; version="1.5.4"; sha256="0g3clqnx4mvqsn743jzlai90ckylv5klkfxyg3lrqfds6n2mjxrh"; depends=[bizdays cli curl dplyr fs humanize lifecycle purrr readxl rvest stringr tibble tidyr xml2]; }; GetoptLong = derive2 { name="GetoptLong"; version="1.0.5"; sha256="00fpm6nd3kqa2ikasxa62jzywi46fvvmx1mdavcp5yrxxn37j8wc"; depends=[crayon GlobalOptions rjson]; }; Ghat = derive2 { name="Ghat"; version="0.2.0"; sha256="0xvr3xpi3d00ns55bwbj7k74ccs0lf0vf8f74qxhi5389bf3l0zr"; depends=[rrBLUP]; }; Ghost = derive2 { name="Ghost"; version="0.1.0"; sha256="0anrb1n3f3jnq2p0dgqzw5a0gby2slafv2bybgy5gm3f9fsj831w"; depends=[R6]; }; @@ -2034,7 +2061,7 @@ in with self; { GofCens = derive2 { name="GofCens"; version="0.92"; sha256="09qy8rsgywdlq04kn6dzdzahhminnx39ih9i84399kn2pnr9vlzi"; depends=[actuar fitdistrplus ggplot2 gridExtra survival survsim]; }; GofKmt = derive2 { name="GofKmt"; version="2.2.0"; sha256="1v9n1hfracincgaip7pym2l9h54azajw4fmsld0ff2rsd5np362z"; depends=[ggplot2 Rcpp RcppArmadillo Rsolnp]; }; GomoGomonoMi = derive2 { name="GomoGomonoMi"; version="0.1.0"; sha256="16kvf355yzpv0z2rndc5f50pxjnav6ld48j40vyip4h353wpwaks"; depends=[glue htmltools]; }; - GoodFibes = derive2 { name="GoodFibes"; version="0.1.7"; sha256="0k40lsbs33964f7vqb5q5pkkpyhv85insmg70yzl54l5yw2y4f13"; depends=[concaveman imager prodlim rgl]; }; + GoodFibes = derive2 { name="GoodFibes"; version="0.1.8"; sha256="0p9kjy66gz7vyz82xllj9v44pyik11k1rwl9y2iqvndwyaq3jsba"; depends=[concaveman imager prodlim rgl]; }; GoodmanKruskal = derive2 { name="GoodmanKruskal"; version="0.0.3"; sha256="1d0xkmkcfcwx0qs8m4b9dgrbkg1qpb859mmzg4d1rww8rc0wxh9h"; depends=[classInt corrplot]; }; GoogleImage2Array = derive2 { name="GoogleImage2Array"; version="0.99.2"; sha256="0ycv7lr1p2rsfln5829yk6nk9h1yk24rirjr1fk27999n42iy1pk"; depends=[EBImage magrittr rvest xml2]; }; GoogleKnowledgeGraphR = derive2 { name="GoogleKnowledgeGraphR"; version="0.1.0"; sha256="1jxiq1s48skn43pydsw8s67hf70v9fhhw2drcx9vni3c3szs44qd"; depends=[curl jsonlite]; }; @@ -2059,7 +2086,7 @@ in with self; { GrpString = derive2 { name="GrpString"; version="0.3.2"; sha256="14ss6assqk6s9kv4bvzlydm8qrbnslm4vj876q5dn2dw4k50dai1"; depends=[cluster plyr Rcpp]; }; GseaVis = derive2 { name="GseaVis"; version="0.0.5"; sha256="01c5rl05lf9abmasw9w8rxlgl55jr3faiwi1ndx993r3j8xvbcqj"; depends=[aplot DOSE dplyr ggplot2 ggpp ggrepel ggsci magrittr purrr RColorBrewer reshape2 stringr tibble]; }; GsymPoint = derive2 { name="GsymPoint"; version="1.1.1"; sha256="1fg8vqd86kcpciphmlcxlm0rk01iza7md5y8kcxp9i732n4zn7r8"; depends=[ROCR Rsolnp truncnorm]; }; - Guerry = derive2 { name="Guerry"; version="1.8.0"; sha256="1ch9s1zpynskld6jnw8iajj9syvmp35xi7igljjbrcc299dyk83y"; depends=[sp]; }; + Guerry = derive2 { name="Guerry"; version="1.8.1"; sha256="1pci00b69sk9qlgpkbmvcijlbh48xdmshh57xgi84m85j16i4rlw"; depends=[sp]; }; GxEScanR = derive2 { name="GxEScanR"; version="2.0.2"; sha256="0k3avad4b2x4sqv8iilx5a8gkybjlipx50mj0la4kl9xv0azshkd"; depends=[prodlim Rcpp RcppArmadillo]; }; H2x2Factorial = derive2 { name="H2x2Factorial"; version="2.0.0"; sha256="01if0ps43xhcw6q5khdbvjd0yvvhkcj4gvdx538g2kaxzi3lrj1z"; depends=[mvtnorm]; }; HAC = derive2 { name="HAC"; version="1.1-0"; sha256="1k19qrirhzl8qaa4svf7qa90r7gphbbvm9m0977z9gd704n8b62a"; depends=[copula]; }; @@ -2082,10 +2109,9 @@ in with self; { HDLSSkST = derive2 { name="HDLSSkST"; version="2.1.0"; sha256="19snvpgiq8kxzqv6yimzn7nfxkch2xkm0sk41m7g4xwr412dn49j"; depends=[Rcpp]; }; HDMT = derive2 { name="HDMT"; version="1.0.5"; sha256="11wr7n6gj75k3a339h9hm167pni3vdbbnwwblc2b0wfljxsif6hf"; depends=[fdrtool qvalue]; }; HDOMDesign = derive2 { name="HDOMDesign"; version="1.0-1"; sha256="1wfq4w73dkkmfwn3n9rwpjlpvm1ak76dv9ymh6zqfls5whdmp59g"; depends=[HadamardR]; }; - HDPenReg = derive2 { name="HDPenReg"; version="0.94.9"; sha256="17lra03iyvs51bgbnbhs4f5rvjvdz9zk7mg2f0xmsr4nvllp44ys"; depends=[Matrix Rcpp rtkore]; }; - HDRFA = derive2 { name="HDRFA"; version="0.1.0"; sha256="0hl92a0cviyp21bpfbwshlnh5mdp52q7xzicy5zcsafan11m8k8h"; depends=[MASS pracma quantreg]; }; + HDRFA = derive2 { name="HDRFA"; version="0.1.1"; sha256="07snry1s0c5r4dns50yh6i8gybnvfgc5p8awlggvk316868f2dd3"; depends=[MASS pracma quantreg]; }; HDShOP = derive2 { name="HDShOP"; version="0.1.3"; sha256="18i17vv71wc0rqfl2i9bcfl1ry3bd61x9nd6g57x37ggjp7i6j5k"; depends=[Rdpack]; }; - HDSpatialScan = derive2 { name="HDSpatialScan"; version="1.0.3"; sha256="12aqqzqbapdh3zg2klhqwlhdvg35ayw126x54mj1iwlkmraxq2iv"; depends=[DT fmsb matrixStats pbapply plotrix purrr Rcpp RcppArmadillo rgeos sf sp SpatialNP swfscMisc TeachingDemos]; }; + HDSpatialScan = derive2 { name="HDSpatialScan"; version="1.0.4"; sha256="1hwqdwr4jl887sgnjwq3gmxjhk6zz45nasvy3x7i7rmrqylxig60"; depends=[DT fmsb matrixStats pbapply plotrix purrr raster Rcpp RcppArmadillo sf sp SpatialNP swfscMisc TeachingDemos]; }; HDStIM = derive2 { name="HDStIM"; version="0.1.0"; sha256="0v43lwszxmka5li6mp10i2c6zq4si5hm2qsb27lib5gq5cxm23r7"; depends=[Boruta broom dplyr ggplot2 ggridges scales tibble tidyr tidyselect uwot]; }; HDTSA = derive2 { name="HDTSA"; version="1.0.2"; sha256="1a2bc86047mla0dr89sf1xrin47v0mmdz6j5sil258hjxrl434hy"; depends=[clime Rcpp RcppEigen sandwich]; }; HDclassif = derive2 { name="HDclassif"; version="2.2.0"; sha256="1l5zxhayhzh7q50ycl481hy0br66ylxyvzw1ahmjjrdkm8s3czyj"; depends=[MASS rARPACK]; }; @@ -2093,7 +2119,6 @@ in with self; { HDcpDetect = derive2 { name="HDcpDetect"; version="0.1.0"; sha256="0ai35d9df5pmva52sb1rr20f11h0mbal6d179g865b7w6n90kfr1"; depends=[]; }; HDiR = derive2 { name="HDiR"; version="1.1.3"; sha256="1qwd3y9645m8v2gdrb4xjpq86ixs9rgrw7iv3m5lm7nnf87qm350"; depends=[circular Directional movMF NPCirc rgl]; }; HDoutliers = derive2 { name="HDoutliers"; version="1.0.4"; sha256="0vc3g36cghs2ln8a3pb344b3vw1jpz9r8ld77ldd898vg9rhkq2m"; depends=[FactoMineR FNN mclust]; }; - HDtest = derive2 { name="HDtest"; version="2.1"; sha256="1c9x4s59762sp7drbm5h1xv22kpifq7p0x3dkrfcd0ficbbma5v8"; depends=[checkmate clime doParallel expm fastclime foreach MASS mvtnorm]; }; HDtweedie = derive2 { name="HDtweedie"; version="1.2"; sha256="0m8xg6fkn81ni1npfadhv2b2zy7nazg46217hr3xw9y53d1a90gk"; depends=[]; }; HEDA = derive2 { name="HEDA"; version="0.1.5"; sha256="0arya76isiaxmgmhl7q93vmga9apmbkq3scgz7zhgnrkd8mkh0i1"; depends=[dplyr ggplot2 lubridate rlang zoo]; }; HEMDAG = derive2 { name="HEMDAG"; version="2.7.4"; sha256="1dmfy5bbnjmjb4d7430i38z9hvpcrwafj6hw46118hwzcl4b6ldv"; depends=[doParallel foreach graph plyr precrec preprocessCore RBGL]; }; @@ -2105,7 +2130,7 @@ in with self; { HGraph = derive2 { name="HGraph"; version="0.1.0"; sha256="1y35lzym3mbr1v7j7v55i9mxb1vn65xzgp5542va1bngvrm25hjf"; depends=[knitr]; }; HH = derive2 { name="HH"; version="3.1-49"; sha256="0yxqh0699x0vfk18p9850wziyglif0lywnljdl14biq71b5z1khj"; depends=[abind colorspace gridExtra Hmisc lattice latticeExtra leaps multcomp RColorBrewer reshape2 Rmpfr shiny vcd]; }; HHG = derive2 { name="HHG"; version="2.3.4"; sha256="1ghw1rpf7n0dfclvxm3p02ym247p3rsncj9f9f97892lk9yin29c"; depends=[Rcpp rmarkdown]; }; - HIMA = derive2 { name="HIMA"; version="2.0.1"; sha256="1ix86nc4jwqzr6jry5995lw9bsijg55har470wbvlljxmpyq6pn0"; depends=[doParallel foreach glmnet HDMT hommel iterators MASS ncvreg survival]; }; + HIMA = derive2 { name="HIMA"; version="2.2.0"; sha256="1wv3lp9bzzj0hdbaql1c9k82icfs6jr5dlicfw4d8dmv1h5n610a"; depends=[doParallel foreach glmnet HDMT hommel iterators MASS ncvreg survival]; }; HK80 = derive2 { name="HK80"; version="0.0.2"; sha256="0c8scpzl5xgqm9rlsvh5nl3bz42i5pzvb873j9bn3bi15gcknbny"; depends=[]; }; HKRbook = derive2 { name="HKRbook"; version="0.1.3"; sha256="1bhyhv72c8afyzwx7h6p33mgfvhgqfh5c5f85gj803p6ai60h544"; depends=[DT formatR highlight MASS scatterplot3d shiny shinydashboard shinydashboardPlus shinyWidgets]; }; HKprocess = derive2 { name="HKprocess"; version="0.1-1"; sha256="0kn84ccaypknxymynp6lnr8asd85rlzbk073z7511rriyz96hyj7"; depends=[gtools MCMCpack]; }; @@ -2122,6 +2147,7 @@ in with self; { HMP = derive2 { name="HMP"; version="2.0.1"; sha256="0233p7gajr2aic0c5snni4g9v1bwn4zd5i3kagxhqxa3mvy5c7wc"; depends=[dirmult doParallel foreach ggplot2 gplots lattice MASS rpart rpart_plot vegan]; }; HMPTrees = derive2 { name="HMPTrees"; version="1.4"; sha256="1jha64iyb0816rdg2i3z7i31z02r72k6acmvw0ibw3sli8zcvphb"; depends=[ape dirmult doParallel foreach HMP]; }; HMR = derive2 { name="HMR"; version="1.0.2"; sha256="1zxfz88sr9m0706r76qizlwcy4il2v49x1lx77nqx40626p4zp7n"; depends=[]; }; + HMTL = derive2 { name="HMTL"; version="0.1.0"; sha256="0pn192bikij1yqms6vnv1n313g4q21966314zvg1krrwisklny9r"; depends=[Matrix pROC]; }; HMVD = derive2 { name="HMVD"; version="1.0"; sha256="0agzvsl2n3zg3i519b93jqpiq9zix0bbrjdzk3ymsbb42dzkmj0d"; depends=[MASS]; }; HPLB = derive2 { name="HPLB"; version="1.0.0"; sha256="1xxckjz90sdmng0sm9dlhwpzj79pxa3vd1cidxc44wjk4h25rq7q"; depends=[data_table]; }; HQM = derive2 { name="HQM"; version="0.1.0"; sha256="1q959qdakwzf07zbyxkvrslyc4kgd47g4wij2fgm7l4w3xm34lwz"; depends=[]; }; @@ -2130,7 +2156,7 @@ in with self; { HS = derive2 { name="HS"; version="1.1"; sha256="1vhbchc446j49jj7jgmy4l59n8ahk5l8jp1rl5xwsmn9iqir62mp"; depends=[data_table ggplot2 ggpubr partitions reshape2 tidyr zoo]; }; HSAUR = derive2 { name="HSAUR"; version="1.3-10"; sha256="1z4drab395bnyfbd19rn9hr1gz78ny773g1anh54w18iszakkvib"; depends=[]; }; HSAUR2 = derive2 { name="HSAUR2"; version="1.1-19"; sha256="0jmljx1pppq81h637kxgs35bfclzfs2pkms72b8immd6xf58kg4h"; depends=[]; }; - HSAUR3 = derive2 { name="HSAUR3"; version="1.0-13"; sha256="17l7gx6c1jl1jz33q08lgd2fwckvxlm5gpwvbfzza48j97r5p7by"; depends=[]; }; + HSAUR3 = derive2 { name="HSAUR3"; version="1.0-14"; sha256="1fsil4n4s71ff8np9w65h8n8b1b2rh017ja8vjd4wq07xi3prbwp"; depends=[]; }; HSDiC = derive2 { name="HSDiC"; version="0.1"; sha256="0wiixb1ylx0l8qfgh5ark6alkdq87xaak1jlxizw1m589vghvqfp"; depends=[glmnet Matrix ncvreg quadprog]; }; HSEtest = derive2 { name="HSEtest"; version="0.1.0"; sha256="0dzc44icmb1kkjr46siqigy0zpi66189qpwijgmlqwhzrj4yql9c"; depends=[]; }; HSPOR = derive2 { name="HSPOR"; version="1.1.9"; sha256="06lr8l71y5fcqcnmgq7cgiab1pcc98wnqzndbxcbikbh33cx7nxv"; depends=[corpcor npregfast]; }; @@ -2143,14 +2169,14 @@ in with self; { HUM = derive2 { name="HUM"; version="2.0"; sha256="06jx3f2zb52gjp05bq3zmgjkyiaa2j9v0biq23gg88gplpign6jw"; depends=[gtools Rcpp rgl]; }; HWEintrinsic = derive2 { name="HWEintrinsic"; version="1.2.2"; sha256="035r5bi7m66g351cmrfmf4cj5qqm4fn5pgy3lzsp3gyp2dv0rkg5"; depends=[]; }; HYDROCAL = derive2 { name="HYDROCAL"; version="1.0.0"; sha256="0xq53nysn9kv6p1clgdjxsvj7qjlcmg02frfpw9fnzim53pzzrp4"; depends=[]; }; - HYPEtools = derive2 { name="HYPEtools"; version="1.3.0"; sha256="074js9315igkjkh6dc1s1vfya1z85x06gfv14w173h5md99glds2"; depends=[clipr data_table dplyr ggplot2 ggpubr ggrepel ggspatial hydroGOF ncdf4 patchwork pbapply purrr rlang stringr tidyr tidyselect]; }; + HYPEtools = derive2 { name="HYPEtools"; version="1.4.0"; sha256="07wp9i8jz23xlq8g0p3yyxlcsys8p02vv8791xf65y6aawlf0fs3"; depends=[clipr data_table dplyr ggplot2 ggpubr ggrepel ggspatial hydroGOF ncdf4 patchwork pbapply purrr rlang scales stringr tidyr tidyselect]; }; HaDeX = derive2 { name="HaDeX"; version="1.2.2"; sha256="1qj6n03pd5kd5ff5h4v8wmnqxxylsxx1p6i88nahqkah2mzg9jdr"; depends=[data_table dplyr DT ggplot2 gsubfn latex2exp readr readxl reshape2 shiny stringr tidyr]; }; HadamardR = derive2 { name="HadamardR"; version="1.0.0"; sha256="0nr8m6fchpmlvhyisb61y0fymjjrk2k1sd67r14n87sgn3mafh4a"; depends=[numbers openxlsx]; }; HanStat = derive2 { name="HanStat"; version="0.90.0"; sha256="0ycppc7cq8jpg2xldl692mxg73agra3sq6zjzlpz7vvr9kqf64g6"; depends=[boot car crayon devtools ggplot2 ggpubr lmtest olsrr]; }; HandTill2001 = derive2 { name="HandTill2001"; version="1.0.1"; sha256="0wgr3rhz1iklirpnzk25afh8fv1qpi2ijmx4xwzplw3w3qir4yv6"; depends=[]; }; Hapi = derive2 { name="Hapi"; version="0.0.3"; sha256="0jqjhfq38k161kqff5cx0vxpsmjm2y5ca7049mvqiwqwvi4fp08m"; depends=[ggplot2 HMM]; }; Haplin = derive2 { name="Haplin"; version="7.3.0"; sha256="1glvg7jnkaxff6frkhshlljgw8lw5flvn5sl4aqa4rv5j82zakn6"; depends=[ff MASS mgcv rlang]; }; - HaploCatcher = derive2 { name="HaploCatcher"; version="1.0.3"; sha256="00q9z9lihw1acrl9p7bl87sz8hqvszchf85dqs72bcx7zz0k6dw3"; depends=[caret doParallel foreach ggplot2 knitr lattice patchwork randomForest]; }; + HaploCatcher = derive2 { name="HaploCatcher"; version="1.0.4"; sha256="182ihr45s2g452h054c6m8lgvj629spq1rd9vglzyy8ymg0l6w4j"; depends=[caret doParallel foreach ggplot2 knitr lattice patchwork randomForest]; }; HaploSim = derive2 { name="HaploSim"; version="1.8.4.2"; sha256="15jawq5bxy2kjvl7bxqjr6p02ivhfrdzjmvjy1vp45jnaz6052v2"; depends=[]; }; HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.7.5"; sha256="0b3szw090dsc3bkas2kvx787ww2i6zzg2qmdyivmqc8amx5arn6g"; depends=[mice nnet Rcpp Rsolnp]; }; Harvest_Tree = derive2 { name="Harvest.Tree"; version="1.1"; sha256="021zmppy7p2iakaxirfjdb5jzakg1ijma9d25ly2ni0nx0p1mh6z"; depends=[rpart]; }; @@ -2165,7 +2191,6 @@ in with self; { HeteroGGM = derive2 { name="HeteroGGM"; version="0.1.0"; sha256="0cfzqhbnsy2254m1n6vbpcxlmiqw7cs26v81f5wyawlyyvdydmxi"; depends=[igraph MASS Matrix]; }; HextractoR = derive2 { name="HextractoR"; version="1.4"; sha256="1wp7n92wgrjyklq159ymrw8y5ads6lhj2fcz54rzdnccdyx5naxi"; depends=[doParallel foreach seqinr]; }; HhP = derive2 { name="HhP"; version="1.0.0"; sha256="0rmvw52a7a75gcwsyv30wvxrb9ykhg4ji3pj2jhgbzjqdc4s9xzw"; depends=[fmrs MASS Matrix]; }; - HiCfeat = derive2 { name="HiCfeat"; version="1.4"; sha256="1imz7zfax74aakzk8457jww9r66qxpr2ncyvjj0y5paxdn76lnnq"; depends=[GenomeInfoDb GenomicRanges glmnet IRanges Matrix rtracklayer]; }; HiClimR = derive2 { name="HiClimR"; version="2.2.1"; sha256="11aip68cjyy70xr0la1apk6gbkabg8vnc3s5cbydyz7yl4v80nn8"; depends=[ncdf4]; }; HiCseg = derive2 { name="HiCseg"; version="1.1"; sha256="19581k3g71wrznyqrp4hmspqyzcbcfbc48xgjlq13zmqii45hcn6"; depends=[]; }; HiDimDA = derive2 { name="HiDimDA"; version="0.2-4"; sha256="0gxkxzys9mcy33xvsim8klaqmb2xwvy5bvgkn9r400j4qfjd3cgg"; depends=[]; }; @@ -2178,7 +2203,7 @@ in with self; { HistData = derive2 { name="HistData"; version="0.8-7"; sha256="0cs231w4x8sw2dwy04xwiw01rr2brfz9smwmplw5g1jv1d7afnlj"; depends=[]; }; HistogramTools = derive2 { name="HistogramTools"; version="0.3.2"; sha256="1wkv6ypn006d8j6bpbhc1knw0bky4y8r7jp87482yd19q5ljsgv0"; depends=[ash Hmisc stringr]; }; HiveR = derive2 { name="HiveR"; version="0.3.63"; sha256="1vi24k23a017czfy9kihmq4s1dywzm274dyhyp1imx94afsnmhc3"; depends=[jpeg plyr png RColorBrewer rgl]; }; - Hmisc = derive2 { name="Hmisc"; version="5.0-1"; sha256="0ngsm05ngzchy4l8a6fww3m2qqz8m04rcbl1zg7va30mia7hyffv"; depends=[base64enc cluster colorspace data_table foreign Formula ggplot2 gridExtra gtable htmlTable htmltools knitr nnet rmarkdown rpart viridis]; }; + Hmisc = derive2 { name="Hmisc"; version="5.1-0"; sha256="0y10hnglid78gnaapmdy3ihjih4i2kvaycn2c60r2wr43nv7wl0q"; depends=[base64enc cluster colorspace data_table foreign Formula ggplot2 gridExtra gtable htmlTable htmltools knitr nnet rmarkdown rpart viridis]; }; Hmsc = derive2 { name="Hmsc"; version="3.0-13"; sha256="13gqwjniwxc5lgsj044qjq6ic0ibwvj3mviw4hq31s89m834gvyb"; depends=[abind ape BayesLogit coda fields FNN ggplot2 MASS Matrix matrixStats MCMCpack nnet pracma pROC rlang sp statmod truncnorm]; }; HoRM = derive2 { name="HoRM"; version="0.1.3"; sha256="09dkpzlwkkdn0z8g9fbb7hzxbrrq70x9v1zx254svck2jyk0hx58"; depends=[ggplot2 MASS orthopolynom quantmod rsm]; }; HodgesTools = derive2 { name="HodgesTools"; version="1.0.0"; sha256="02i87pd5ah3mmf03878354p8nqh3bgn9cnrl1pnnrb3qw7afj19q"; depends=[data_table dplyr ggplot2 ini magrittr qqman RColorBrewer readr RecordLinkage]; }; @@ -2192,9 +2217,10 @@ in with self; { HurreconR = derive2 { name="HurreconR"; version="1.0"; sha256="0ga9dzywpn8hm2vq36y3mhsxzvs151xknjjljmcihaczph6yyny4"; depends=[raster rgdal]; }; HyRiM = derive2 { name="HyRiM"; version="2.0.2"; sha256="02hb8kl02872xvyhg0k19xavcmhqmf0ddfnxx5nxlpzgzb432csd"; depends=[compare grImport2 polynom purrr Rglpk]; }; HybridDesign = derive2 { name="HybridDesign"; version="1.0"; sha256="19hgljm7mhd00s2lvvxmdr35zifnl0kymmcx06jfqkld3qd3zli6"; depends=[ResourceSelection testit]; }; - HydeNet = derive2 { name="HydeNet"; version="0.10.11"; sha256="1qi87k2drizqba1nz8psh697ks8ai8xz492kzsrs76xlxpbk1i9k"; depends=[checkmate DiagrammeR dplyr graph magrittr nnet pixiedust plyr rjags stringr]; }; + HybridMicrobiomes = derive2 { name="HybridMicrobiomes"; version="0.1.0"; sha256="0qn3pymx47a7r52mjj39n41aclmwmwspmwzlhjmdl84n8yy9c2fg"; depends=[compositions PERMANOVA phyloseq rgl rlang]; }; HydroCode = derive2 { name="HydroCode"; version="1.0.3"; sha256="1kykxra9cg1n17l2zmnjk1qv8450v4qix5sylm1k9xxzirbb7wca"; depends=[sp]; }; HydroMe = derive2 { name="HydroMe"; version="2.0-1"; sha256="1pzf3z3f2xqmj7ixdg01k8552l4vz7yaf2mb53q59ihfhlbqchni"; depends=[]; }; + HydroPortailStats = derive2 { name="HydroPortailStats"; version="1.0.3"; sha256="1f5h9xqn4vn9wbnvlshbc8r200vx1pwm9ic7sdzsv4z0j7z7wl1j"; depends=[evd mvtnorm numDeriv]; }; HyperG = derive2 { name="HyperG"; version="1.0.0"; sha256="0w84ph0vd03i22s8g52jf2w96yd80ynbh6x0p88apg92jdsapcrc"; depends=[gtools igraph Matrix mclust proxy RSpectra]; }; HyperbolicDist = derive2 { name="HyperbolicDist"; version="0.6-4"; sha256="0xsgy995z79qdamwdgs335r8zr2bk5cyw4wijqyvgwx3pqmwvvmr"; depends=[]; }; HypergeoMat = derive2 { name="HypergeoMat"; version="4.0.2"; sha256="06ljg2v0dbqi9mf2l236p616x62cbx4q05qymbsj8inmajwv0piz"; depends=[EigenR gsl JuliaConnectoR Rcpp RcppEigen]; }; @@ -2245,24 +2271,23 @@ in with self; { IDConverter = derive2 { name="IDConverter"; version="0.3.4"; sha256="047l03b53cq0ijsmcl3lw4g45ligc1ajrrv7nh02mmaj3wng7dji"; depends=[data_table httr tibble]; }; IDE = derive2 { name="IDE"; version="0.3.1"; sha256="1pbfxhcbnmn0mh7a96ff58p4dpkb0di7l0v40nqyjk4jbkpd8rfl"; depends=[DEoptim dplyr FRK ggplot2 Matrix sp spacetime sparseinv tidyr]; }; IDEAFilter = derive2 { name="IDEAFilter"; version="0.1.2"; sha256="1nwsq5jy374f2sdnrxw79kq3wklydrygm4qsd6v6npdqw55jli2l"; depends=[crayon ggplot2 pillar purrr RColorBrewer shiny shinyTime]; }; - IDEATools = derive2 { name="IDEATools"; version="3.4.1"; sha256="0df4s9riwc616nh1xyh5579dg3y6nfdnghykp2nc44d3p9nl4baq"; depends=[data_table ggimage ggplot2 ggpubr ggtext jsonlite openxlsx pdftools readxl rlang rmarkdown shiny stringi tibble]; }; + IDEATools = derive2 { name="IDEATools"; version="3.4.2"; sha256="1xg7483srnvrzhm3s4amaac1fx3x0jw4x0nnlc96jnvhpp8l7l1z"; depends=[data_table ggimage ggplot2 ggpubr ggtext jsonlite openxlsx pdftools readxl rlang rmarkdown shiny stringi tibble]; }; IDF = derive2 { name="IDF"; version="2.1.2"; sha256="19mg7a83badb3wqnrmx5ric0nlfdb33wcxfmq9457s8019ghvpvv"; depends=[evd fastmatch ismev pbapply RcppRoll]; }; IDPSurvival = derive2 { name="IDPSurvival"; version="1.2"; sha256="0hifs8vw3rxlb5vlxs1433pcv2dh7p0mxpgb2n03d98f20vkdwfw"; depends=[gtools Rsolnp survival]; }; IDPmisc = derive2 { name="IDPmisc"; version="1.1.20"; sha256="0zy6mxqa8arq0vvhsdcifzm3085c23rnwa1n36fhircph1xwvfdw"; depends=[lattice]; }; IDSA = derive2 { name="IDSA"; version="2.1"; sha256="0ld2359ksnw9jrjicnqikh5r321mfy2i7vzlhh9phm60k0qf5j98"; depends=[GD ggplot2 kableExtra reshape2]; }; - IDSL_CSA = derive2 { name="IDSL.CSA"; version="1.0"; sha256="0mf8g6rdvdp6gr0xf9d8wld885jpqpazkqh82bafn7bgk1y30qgq"; depends=[doParallel foreach IDSL_FSA IDSL_IPA IDSL_MXP readxl]; }; - IDSL_FSA = derive2 { name="IDSL.FSA"; version="1.0"; sha256="1b6am1cpf01r80lzjq0clg4dbs2j62clv6h8fcb90c6vhivlgaw7"; depends=[doParallel foreach readxl]; }; - IDSL_IPA = derive2 { name="IDSL.IPA"; version="2.7"; sha256="1h7q9nf1gx63dsvpnw6qdkmhh1whg6jb26sp2sib6jbyhic83aha"; depends=[IDSL_MXP readxl]; }; + IDSL_CSA = derive2 { name="IDSL.CSA"; version="1.1"; sha256="00fa95c9g34bnh8f9mvrw7mja0rmk1r4mdw91pzpxzgsg49jkxp0"; depends=[IDSL_FSA IDSL_IPA IDSL_MXP readxl]; }; + IDSL_FSA = derive2 { name="IDSL.FSA"; version="1.1"; sha256="0shg7f628hla70z704qqrqcid0r4c10ilhxdr0w33nnrdd4d3c4p"; depends=[]; }; + IDSL_IPA = derive2 { name="IDSL.IPA"; version="2.8"; sha256="172x91234rzg1g5h99zcccqxl4zij7w1dbbi8d1kc9bz8x1wgp0k"; depends=[IDSL_MXP readxl]; }; IDSL_MXP = derive2 { name="IDSL.MXP"; version="2.0"; sha256="0m6n94xzpwba5ag030zl5piharssmkj1fz4mz2lybs2935f1zfbp"; depends=[base64enc xml2]; }; - IDSL_NPA = derive2 { name="IDSL.NPA"; version="1.0"; sha256="13nrbr4dgwcv6zs5d6qlcwig8kanb7bqbhjhiy98y3gj88pwr490"; depends=[doParallel foreach IDSL_FSA IDSL_IPA IDSL_MXP readxl]; }; + IDSL_NPA = derive2 { name="IDSL.NPA"; version="1.1"; sha256="03n23w1sk3pkc59dvvyag0wad0ydww32qgbsdg3xdpbk4mxi4dy2"; depends=[IDSL_FSA IDSL_IPA IDSL_MXP readxl]; }; IDSL_SUFA = derive2 { name="IDSL.SUFA"; version="1.3"; sha256="0db79jcvks54x2fb58g9ynw05zz95bjiwcd77g37jzjwq70ds5ah"; depends=[]; }; - IDSL_UFA = derive2 { name="IDSL.UFA"; version="1.9"; sha256="1s7y033nnk8qbpv7i6ksx7cxsra14aincrck87im0cj1mhwqbjp2"; depends=[IDSL_IPA readxl]; }; + IDSL_UFA = derive2 { name="IDSL.UFA"; version="2.0"; sha256="19kd3zp0864dfwkja4lvkiq58nqfb91jyfq2wm1qp84h9hj4bd8l"; depends=[IDSL_IPA readxl]; }; IDSL_UFAx = derive2 { name="IDSL.UFAx"; version="1.9.1"; sha256="0zdz5s2fa7bgqmscxlf9ppvkpnxidy9fhkxn3qf94bc7y4h5xzh7"; depends=[IDSL_IPA IDSL_UFA RcppAlgos readxl]; }; IDetect = derive2 { name="IDetect"; version="0.1.0"; sha256="1q1jwgildhx6sp883ni7vcsa3gj997855v5ky41dyf34kv7hvdl1"; depends=[]; }; IDmeasurer = derive2 { name="IDmeasurer"; version="1.0.0"; sha256="0n7rziaaxm9dqixmw6rxgq9dwnwdl3dsdnpd9s59k5skdlaxnl5m"; depends=[infotheo lme4 MASS]; }; IDmining = derive2 { name="IDmining"; version="1.0.7"; sha256="1yv8lclkb1ws2n4yd3l561lqhp25vlw0f6d073yg04pidr2dpg2a"; depends=[data_table doParallel foreach]; }; IETD = derive2 { name="IETD"; version="1.0.0"; sha256="0avhyw0zcb8vj0nqfy41yq5kcd8yf9rmaawdvfcy5rqwxmi1mw9l"; depends=[doParallel dplyr foreach ggplot2 lubridate Rdpack]; }; - IFAA = derive2 { name="IFAA"; version="1.1.2"; sha256="0phy8g1b0z1cv8sd1ynfnn29clm57wfj7qszlwnz12p20l7viwdd"; depends=[DescTools doParallel doRNG foreach glmnet HDCI mathjaxr Matrix MatrixExtra parallelly S4Vectors stringr SummarizedExperiment]; }; IFC = derive2 { name="IFC"; version="0.2.0"; sha256="0j4lfppcf8ybs5y2a6bxdxfl1wx9nph7zdxpkr65kma0kdzrc7ih"; depends=[DT gridExtra gridGraphics jpeg KernSmooth lattice latticeExtra png Rcpp tiff visNetwork xml2]; }; IFMCDM = derive2 { name="IFMCDM"; version="0.1.17"; sha256="04qiq5i2nw3l64yz0xwh7c8dcfh69xinb8l0zq0a8gi67vd1yka7"; depends=[dplyr]; }; IFP = derive2 { name="IFP"; version="0.2.4"; sha256="066wz6bjqcvq22gjg2wcmglp798f87rsc8yhm13p0dic3arb5ph6"; depends=[coda haplo_stats]; }; @@ -2285,14 +2310,14 @@ in with self; { IMmailgun = derive2 { name="IMmailgun"; version="0.1.2"; sha256="09acmi6xj186fb8nhj8q0nxmkp2p32a1l95glzvz84gax4xakhz8"; depends=[httr]; }; INCATome = derive2 { name="INCATome"; version="1.0"; sha256="1gbmcirs49ydmk5rg2vl5gdy39dfx9psw5mijibzjszcfjar3kqs"; depends=[genefilter limma multtest RankProd siggenes]; }; INLABMA = derive2 { name="INLABMA"; version="0.1-11"; sha256="0wzyb3c7zpksqz198kigi4rpblvk0rjamngmyabw5xdpizxdg6zi"; depends=[Matrix sp spdep]; }; - INLAspacetime = derive2 { name="INLAspacetime"; version="0.1.5"; sha256="1ymyp3ciwidgjys5110k1yh1wbksrvg06r4ppds583956sn7l174"; depends=[Matrix sp]; }; + INLAspacetime = derive2 { name="INLAspacetime"; version="0.1.6"; sha256="11kkmmz4lm0qdqmbnx1j719kdwmq3zrvmd5kh099x3gmrmi90ivd"; depends=[Matrix sf sp]; }; INQC = derive2 { name="INQC"; version="2.0.5"; sha256="1gz7gyq5n2bmh18yrg29nz8kmdc0b35chwqxr6y2sggdm8j28akd"; depends=[evd gdata suncalc]; }; INSPECTumours = derive2 { name="INSPECTumours"; version="0.1.0"; sha256="1jh6p3bgnrjixqzvjl0z3nv6lh01fx3x925h3na2pi3scqx5gx0s"; depends=[brms dplyr DT ggeffects ggplot2 knitr lme4 modelr pander plotly purrr readxl rlang rmarkdown shiny shinyalert shinyFeedback shinyjs shinytoastr shinyvalidate tidybayes tidyr tippy vroom waiter]; }; INSPIRE = derive2 { name="INSPIRE"; version="1.5"; sha256="0938l50yxnb5q628mp874ayx9ybvcjddis20y1hzm5cmlsg0hqhg"; depends=[missMDA]; }; INTRIGUE = derive2 { name="INTRIGUE"; version="0.1.0"; sha256="1l1vfl0m4iqniwp4bp1bfjpqhwahg341fpyxhryr0j8lypqaw7si"; depends=[dplyr rlist SQUAREM]; }; IOHanalyzer = derive2 { name="IOHanalyzer"; version="0.1.6.3"; sha256="1y8qvjm9mrdfxzgxyn5w8798gay0mf4l5lw7s845bcglpyr91q6p"; depends=[colorRamps colorspace data_table dplyr ggplot2 httr knitr magrittr plotly RColorBrewer Rcpp reshape2 shiny stringi]; }; IOHexperimenter = derive2 { name="IOHexperimenter"; version="0.1.4"; sha256="0aacliznncl488rjsnx02pfj1mchhcyb36v816g959ll38pvc6bk"; depends=[assertthat BH magrittr Rcpp]; }; - IOLS = derive2 { name="IOLS"; version="0.1.3"; sha256="0b2vhlw5z7lqphlhk5by4rfxxyxh1h3b2z2mancxmil99bvipm6k"; depends=[boot matlib randomcoloR sandwich stringr]; }; + IOLS = derive2 { name="IOLS"; version="0.1.4"; sha256="0s7yrkps61czsf1avvmb1xcq53v92pfikq949a4i46lsyidl69ib"; depends=[boot matlib randomcoloR sandwich stringr]; }; IPCAPS = derive2 { name="IPCAPS"; version="1.1.8"; sha256="17ifkgjjnvvcc8dp065ng4ad9lr85lcdcb401vi84yy8m2llbypw"; depends=[apcluster expm fpc KRIS LPCM MASS Matrix Rmixmod]; }; IPCWK = derive2 { name="IPCWK"; version="1.0"; sha256="0hah1xl6zli0346jh57rjc5x8vynhaysj0l481rmvznsghv6im23"; depends=[MASS survival]; }; IPDFileCheck = derive2 { name="IPDFileCheck"; version="0.7.5"; sha256="1y0qq6q98lq1srsp1mlb7mr9zn2v4j7gpzim9fgh3xarw6a89i0h"; depends=[dplyr eeptools effsize gmodels gtsummary hash kableExtra lmtest lubridate stringr testthat tidyselect tidyverse zoo]; }; @@ -2300,7 +2325,7 @@ in with self; { IPEC = derive2 { name="IPEC"; version="1.0.3"; sha256="1f5draxw3q26d03h6mcyc8zrd1gmizmc0v01sppdnx8a21878rqz"; depends=[MASS numDeriv]; }; IPEDS = derive2 { name="IPEDS"; version="0.1.0"; sha256="122v4m3lf5ix10a1ihw1qi8w975iamscaqg2vc5f5k6z8dy9s6ph"; depends=[dplyr readr rlang tidyr]; }; IPEDSuploadables = derive2 { name="IPEDSuploadables"; version="2.7.5"; sha256="0rj1d87im7jxw9kyb82irxsanrqmn9fa29347yjn51lj8wqdgkwm"; depends=[dplyr lubridate magrittr purrr rlang stringr svDialogs tidyr]; }; - IPLGP = derive2 { name="IPLGP"; version="2.0.3"; sha256="02gjsbd5bfqi575xs3fq01r1cr01gmsxxb58bfj3npgwba8vah21"; depends=[ggplot2 sommer]; }; + IPLGP = derive2 { name="IPLGP"; version="2.0.4"; sha256="0sv4zl6kn72ajnp32k9xg011y0bjxsq3a0vcj3s0w4wwkcr1h2w5"; depends=[ggplot2 sommer]; }; IPMbook = derive2 { name="IPMbook"; version="0.1.4"; sha256="152y6d949jjfdfmcjfi0g4p2d02pmqgamxmx5bi3wb352jbjxl08"; depends=[abind]; }; IPPP = derive2 { name="IPPP"; version="1.1"; sha256="19ccs25fd56ns7ssi51w2jzjd4d57vyimwmfvf27mmigb537bd5y"; depends=[]; }; IPV = derive2 { name="IPV"; version="1.0.0"; sha256="0h1x2scmwgzl7i0kk4pf7kfq55yiqn065s5r944rrfk09y9g2vgy"; depends=[ggforce ggplot2 lavaan Matrix reshape2 stringr]; }; @@ -2316,6 +2341,7 @@ in with self; { IRexamples = derive2 { name="IRexamples"; version="0.0.2"; sha256="0a8b5bfjg0f5l2awg1q80xb9i0fbvss466z7j61lzpps83059w9r"; depends=[DisImpact dplyr forcats geodist ggplot2 ggthemes maps RSelenium rstanarm rvest sf survey tidycensus tidygeocoder tigris twang]; }; IRkernel = derive2 { name="IRkernel"; version="1.3.2"; sha256="19i4wj5cb62n6j83nxgv500dcdzrf6rzwdy5v6fh7r93vjyxiip1"; depends=[crayon digest evaluate IRdisplay jsonlite pbdZMQ repr uuid]; }; IRon = derive2 { name="IRon"; version="0.1.4"; sha256="1yl9i6gxzwy5f4qva3a14flzlk1xk7v2m02n0mg8ddchc5n6j3bc"; depends=[ggplot2 ggpubr gridExtra Rcpp robustbase scam]; }; + ISAR = derive2 { name="ISAR"; version="0.1.10"; sha256="1khcs0azjbmrnn4i6wikrjr92x1w9z0jlrv4an5v59y25i0hwmvb"; depends=[]; }; ISAT = derive2 { name="ISAT"; version="1.0.5"; sha256="0xlq568spfz527jxbqamrn1j87hnasg0kp2bcyjycaghmhsc6zmg"; depends=[gtools stringr]; }; ISCO08ConveRsions = derive2 { name="ISCO08ConveRsions"; version="0.1.1"; sha256="1vqg28alpjb1m33hzh4ixfd6f3gzc6l9989gpszvl3ishki05xqf"; depends=[]; }; ISEtools = derive2 { name="ISEtools"; version="3.2.0"; sha256="1dj8q1072j7sn7j9s2mjxm12k6kn5gcqpic8jp2k1f3f7b85dbij"; depends=[coda]; }; @@ -2327,6 +2353,7 @@ in with self; { ISOpureR = derive2 { name="ISOpureR"; version="1.1.3"; sha256="1ydhsh3v6n7prrg0dm7hsg8wx1244g791xnz1sjyhljhm31hgwc0"; depends=[futile_logger Rcpp RcppEigen]; }; ISOweek = derive2 { name="ISOweek"; version="0.6-2"; sha256="1f1h8pgjaa14cvaj8ldl87b4vslxwvyfj46m0hkylwp73sv3g2mm"; depends=[stringr]; }; ISR = derive2 { name="ISR"; version="2022.4.22"; sha256="0j31qicbpjgl0igmk37qg10zng31xk6w4dd1izz5pzjwb3w9qkli"; depends=[MASS]; }; + ISS = derive2 { name="ISS"; version="0.1.3"; sha256="1z4i7rizwvsgbch70nb0in5r1402cr38rkjs0kcvdrnwa7rkb8mh"; depends=[Rdpack]; }; ISwR = derive2 { name="ISwR"; version="2.0-8"; sha256="1bay7na68awq68bw82dwhcfxp2d3di2dg33islq0mgrhd4sfdfza"; depends=[]; }; ITNr = derive2 { name="ITNr"; version="0.7.0"; sha256="0zpyrg4vcn17k75x1i1dp2hw8n2fp34qf4skywx3wrchjpxmsra8"; depends=[blockmodeling circlize cowplot dplyr fastmatch GGally ggplot2 igraph intergraph maps network networkDynamic plyr RColorBrewer reshape2 sna tnet WDI xergm_common]; }; ITRLearn = derive2 { name="ITRLearn"; version="1.0-1"; sha256="03xdbpn3qddcq9krdpnywd3xbzfh2viym2qqx6rcqs7w7bdhhlk6"; depends=[Formula kernlab]; }; @@ -2343,7 +2370,7 @@ in with self; { InPosition = derive2 { name="InPosition"; version="0.12.7.1"; sha256="0d9c7dwaa1v0j8p5ff9223fc2gkbmbvyqylma2d8l4x5m92jmkv0"; depends=[ExPosition prettyGraphs]; }; InSilicoVA = derive2 { name="InSilicoVA"; version="1.4.0"; sha256="15x6d928rk9in2swbaal6hcw2nikj153fgqyd7nhdkcbs1agrsl1"; depends=[coda ggplot2 InterVA5 rJava]; }; IncDTW = derive2 { name="IncDTW"; version="1.1.4.4"; sha256="0q8ssv86gbp3v6gznzm5vkc8qhny6ycbh85jg5z4izldpx8a4fq6"; depends=[data_table ggplot2 Rcpp RcppArmadillo RcppParallel scales]; }; - IncidencePrevalence = derive2 { name="IncidencePrevalence"; version="0.2.0"; sha256="17dnnlyp1ggcvc686i3pacbmkayk19vr25nh56rbzi7m1mrgfv30"; depends=[CDMConnector checkmate cli DBI dbplyr dplyr glue lubridate magrittr purrr rlang stringr tidyr tidyselect zip]; }; + IncidencePrevalence = derive2 { name="IncidencePrevalence"; version="0.3.0"; sha256="0kiqwqb2pivl6yhkd50k4w9gqswk8r34xlkrma4xgrpv28vlplay"; depends=[CDMConnector checkmate cli DBI dbplyr dplyr ggplot2 glue lubridate magrittr purrr rlang scales stringr tidyr tidyselect zip]; }; IncomPair = derive2 { name="IncomPair"; version="0.1.0"; sha256="156mc4csbxz976md7ikjd6sqamzsfc8ik9xf1qbhrfl8y7957kbb"; depends=[]; }; IndTestPP = derive2 { name="IndTestPP"; version="3.0"; sha256="1z48pr8znbk1gdvjfdvszxlzhj7v88p3y7zhi1f0xw75dkfpnwwy"; depends=[]; }; IndepTest = derive2 { name="IndepTest"; version="0.2.0"; sha256="017jasqsxm5m13rhfy9gxvd8nfib5k5y5c8520p3hcffqrxr683p"; depends=[FNN mvtnorm Rdpack]; }; @@ -2355,11 +2382,11 @@ in with self; { InfiniumPurify = derive2 { name="InfiniumPurify"; version="1.3.1"; sha256="0yqah4rwpishas0xyv5a7cn4v18brj33cd7f494g21b9brggafq1"; depends=[matrixStats]; }; Inflation = derive2 { name="Inflation"; version="0.1.0"; sha256="0ikhsslbg32kr9vcaxq8qwaa7ahiwvq91xwv53550wci2vyzmybp"; depends=[seasonal]; }; Inflect = derive2 { name="Inflect"; version="1.1.0"; sha256="09904nn33libjv29n74n5nq1hj6ka8a4h3jllwpbxk9hsmnlmf9h"; depends=[data_table ggplot2 optimr plotrix readxl tidyr UpSetR writexl]; }; - InflectSSP = derive2 { name="InflectSSP"; version="1.5"; sha256="1wa1lwvp4rh0rhr52wr5a8xdfmcv0lzy1mzavv5nhz8jkwm7i35g"; depends=[data_table GGally ggplot2 httr jsonlite network plotrix RColorBrewer readxl svglite tidyr xlsx]; }; + InflectSSP = derive2 { name="InflectSSP"; version="1.6"; sha256="14i53bsy693yh28y1akg4xd6srz077v9a8i7hx07qf73w2m84v1z"; depends=[data_table GGally ggplot2 httr jsonlite network plotrix RColorBrewer readxl svglite tidyr xlsx]; }; InfoTrad = derive2 { name="InfoTrad"; version="1.2"; sha256="0blfn59w73hjga15sw8plwvn6yq9fj95nxwp018mp1harl8wa5db"; depends=[nloptr]; }; Information = derive2 { name="Information"; version="0.0.9"; sha256="0pszwzj3r7vdvdsy9w1qz95zxp7y2bsyg36b58mm4qcvcvymd4kn"; depends=[data_table doParallel foreach ggplot2 iterators plyr]; }; InformativeCensoring = derive2 { name="InformativeCensoring"; version="0.3.5"; sha256="1c8mfb82px9z27lc7br514mcbl65q7lfa3df9w3vvnk5g7ljswha"; depends=[boot dplyr survival]; }; - Infusion = derive2 { name="Infusion"; version="2.0.0"; sha256="1f4j8qy6ykwp0xi8gbh2f4n6awc8zd5sqxgb7fgjmdw3k7gvs1ah"; depends=[blackbox foreach mvtnorm numDeriv pbapply proxy ranger spaMM viridis]; }; + Infusion = derive2 { name="Infusion"; version="2.1.0"; sha256="0dmbqwgavbfp54l47p6zdy75k9wi9zw3ai18q4gy8l4ag5vldzhi"; depends=[blackbox foreach matrixStats mvtnorm numDeriv pbapply proxy ranger spaMM viridis]; }; InjurySeverityScore = derive2 { name="InjurySeverityScore"; version="0.0.0.2"; sha256="0g52cksa774in18ykrym61l3my9zm343bgsq5mg7mki9x65xd35z"; depends=[dplyr rlang tidyr]; }; InspectChangepoint = derive2 { name="InspectChangepoint"; version="1.2"; sha256="084ji77z0dnbjrhy6z40kjbblsgk3z00z256pfknkqxd3v7sawvc"; depends=[MASS]; }; IntCal = derive2 { name="IntCal"; version="0.3.1"; sha256="0d5sd63ajmksafxfrfbd8jsgkbcxirjgd1532blylbcnwjlcws15"; depends=[]; }; @@ -2372,12 +2399,12 @@ in with self; { InterSIM = derive2 { name="InterSIM"; version="2.2.0"; sha256="14yccan88szf26w1hg1lkvmssids961gng7il3bjr2f1l0k8vd3b"; depends=[MASS NMF]; }; InterVA4 = derive2 { name="InterVA4"; version="1.7.6"; sha256="02fci1p8im8jpalv1mbrhrwhvpi23mzhwhpd1knpxyv7h6l9x0kg"; depends=[]; }; InterVA5 = derive2 { name="InterVA5"; version="1.1.3"; sha256="08cnhbq1048z7qcvvj0d1br7d8jljzf48ci94aixs0y0vs8lgvvz"; depends=[curl readxl]; }; - InteractionPoweR = derive2 { name="InteractionPoweR"; version="0.2.0"; sha256="09d3v425nj8ph8qsm85z68rixq7k1yppf5v0jmh8klbhn5rikajn"; depends=[chngpt doParallel dplyr foreach ggbeeswarm ggplot2 MASS polynom rlang tidyr]; }; + InteractionPoweR = derive2 { name="InteractionPoweR"; version="0.2.1"; sha256="1mff2kasdrkk56xqvw66m8sn6186dk0nbv8bx0izpr5qf9dz308q"; depends=[chngpt doParallel dplyr foreach ggbeeswarm ggplot2 MASS Matrix polynom rlang tidyr]; }; Interatrix = derive2 { name="Interatrix"; version="1.1.3"; sha256="1pjyfg5p6081hng9h6wcmfnlfkcs300c3x9ksdj01587b97ph9s1"; depends=[MASS]; }; InterfaceqPCR = derive2 { name="InterfaceqPCR"; version="1.0"; sha256="12nmkv6qnzh2dnbhk1656dla6mrznh24gqblmn4xai7wg4p92fbx"; depends=[plyr reshape2 tkrplot xlsx]; }; InterpretMSSpectrum = derive2 { name="InterpretMSSpectrum"; version="1.3.3"; sha256="1nvi5l0m5118b0m65l52mby34vw05nhp37pl6rba1220a10iasih"; depends=[enviPat plyr Rdisop]; }; IntervalQuestionStat = derive2 { name="IntervalQuestionStat"; version="0.2.0"; sha256="0pvz5l0pvw8akmvv51c48fx1ppms9iq6s4bwscja8jk56akx2wlq"; depends=[]; }; - IntervalSurgeon = derive2 { name="IntervalSurgeon"; version="1.1"; sha256="0dhsy40wx47g7h8ivriscyvxwl991lfal4nq0j476kamxax0yzbw"; depends=[Rcpp]; }; + IntervalSurgeon = derive2 { name="IntervalSurgeon"; version="1.2"; sha256="02l2r83mz4x9x40p8gxwyrqa25qk0cy22k39lv93plvcpadcs8a5"; depends=[Rcpp]; }; InvStablePrior = derive2 { name="InvStablePrior"; version="0.1.0"; sha256="1nkbly897prbffdrcrxdvr16f6ipm3if1dg3rm35jcl2ksya6snd"; depends=[fdrtool nimble]; }; InvariantCausalPrediction = derive2 { name="InvariantCausalPrediction"; version="0.8"; sha256="01ckyvjl9lxdpkr0v1da4n4lw3b5z1bxlmf0v6ibqly1mhfwybjl"; depends=[glmnet mboost]; }; InvasionCorrection = derive2 { name="InvasionCorrection"; version="0.1"; sha256="1wwx2kssjysl1lraac36pvxq34vg8qm0vwi861rs1iipfc35i84j"; depends=[lattice]; }; @@ -2396,8 +2423,8 @@ in with self; { IsoGene = derive2 { name="IsoGene"; version="1.0-24"; sha256="0flm0mszankvl3aizwsazyhvz2xkr4gfqiqywpc0r1swqj19610r"; depends=[affy Biobase ff Iso xtable]; }; IsoMemo = derive2 { name="IsoMemo"; version="1.0.6"; sha256="1srs8iiy1w18gyzkw60gxw90mdmywmlnfsw3da4izl42x0ngqjww"; depends=[curl jsonlite modules]; }; IsoSpecR = derive2 { name="IsoSpecR"; version="2.1.3"; sha256="0cy9y3lh20xxj9sah8s2zrwnbzk39s5xmscj4mskvn897bmlksh6"; depends=[Rcpp]; }; - IsoplotR = derive2 { name="IsoplotR"; version="5.2"; sha256="1c2raxaayks7vzp71xb8xzd95gjm101xi85r23q52lkzjjrj164h"; depends=[MASS]; }; - IsoplotRgui = derive2 { name="IsoplotRgui"; version="5.2"; sha256="00v2vlfzqbwdgpp2mrqcizzs6zkrjcrv6kj7l24ghplvljmz33lk"; depends=[IsoplotR shinylight]; }; + IsoplotR = derive2 { name="IsoplotR"; version="5.3"; sha256="034i7d01zqam1nyaqvvgg4gsllclw88fpia0il3m0sf3rh5s45km"; depends=[MASS]; }; + IsoplotRgui = derive2 { name="IsoplotRgui"; version="5.3"; sha256="00g8k06bd5l6nifks60bp23l9af2wrrvx93cs4kj0dkqqzd0y9hs"; depends=[IsoplotR shinylight]; }; IsoriX = derive2 { name="IsoriX"; version="0.9.0"; sha256="0pm51jxw16264nf5wdpjhyydrb16ydyw76h45madw5nf6bibhgsp"; depends=[elevatr lattice latticeExtra numDeriv raster rasterVis sp spaMM viridisLite]; }; IsotopeR = derive2 { name="IsotopeR"; version="0.5.4"; sha256="0xgha5alh5y5qfz00rl73q4xlamnmrwij7kckljmy6zgrlrdnl6x"; depends=[colorspace ellipse fgui plotrix runjags]; }; IterativeHardThresholding = derive2 { name="IterativeHardThresholding"; version="1.0.2"; sha256="0vv8v61pzlykdyjivl19q8nr9p22c845y902yljgrvc9ayidczqm"; depends=[Cyclops ParallelLogger]; }; @@ -2406,11 +2433,12 @@ in with self; { JATSdecoder = derive2 { name="JATSdecoder"; version="1.1.2"; sha256="0422liy1qyih0nrwmd1vmzlsk94axmvnraxgwyp4j87ip7qvxaak"; depends=[NLP openNLP]; }; JBrowseR = derive2 { name="JBrowseR"; version="0.9.1"; sha256="08dqgi40l230cn0mp38zfcwv9fd5rawc8zmphf3klq5fkv861l7f"; depends=[cli dplyr htmltools htmlwidgets httpuv ids jsonlite magrittr mime reactR readr stringr]; }; JCRImpactFactor = derive2 { name="JCRImpactFactor"; version="1.0.0"; sha256="1i7853i8k03nq7ax9rypm9qcl5qgyddblgbfjp3yxi1s3a6bkwk1"; depends=[stringr]; }; - JFE = derive2 { name="JFE"; version="2.5.3"; sha256="1k9z6jq07gpq25imk8fx0wyh69z626mipc1fb7z67h4iygyznwjv"; depends=[fPortfolio tcltk2 xts zoo]; }; + JFE = derive2 { name="JFE"; version="2.5.4"; sha256="0shbjggsnpn433k2yz40sq16hycxh6kj9y945vzxnf513jcmzwwl"; depends=[fPortfolio tcltk2]; }; JFM = derive2 { name="JFM"; version="1.0"; sha256="08655vgfb2ll8hwjsj5lsw4849rahn3blisdqn8bwfhclrwd24xn"; depends=[MASS randomcoloR Rcpp RcppArmadillo rgl RockFab Rvcg]; }; JGEE = derive2 { name="JGEE"; version="1.1"; sha256="078348n623hlyc3n9yh67vv5acsnxapmbwybvrb1i7kawmqw5msi"; depends=[gee MASS]; }; JGL = derive2 { name="JGL"; version="2.3.1"; sha256="02p9z32f8j60wnh1szkjr2zfa9zwyw0gqinpsvll4dymf8cjawpw"; depends=[igraph]; }; - JGR = derive2 { name="JGR"; version="1.9-1"; sha256="0zh9v16ymq68xv1canfh0hafizb722632pv7r5xb1fsc230hbcc7"; depends=[JavaGD rJava]; }; + JGR = derive2 { name="JGR"; version="1.9-2"; sha256="1rcmbgxwzwhzh5fa0lghjdllcfkpirdavdghvxx5fjysn7a38mjv"; depends=[JavaGD rJava]; }; + JICO = derive2 { name="JICO"; version="0.0"; sha256="08ah7bjwkxm8fdk1s0vj3lpc7dvgz9llyhh4z9xsgpf4w98rwsvb"; depends=[MASS Matrix nleqslv rlist]; }; JLPM = derive2 { name="JLPM"; version="1.0.1"; sha256="0k63vi44vfb0k9nkqyhh3iymrca7p47xf2h4x2c4fi50v6bs3v2l"; depends=[marqLevAlg randtoolbox stringr survival]; }; JM = derive2 { name="JM"; version="1.5-2"; sha256="133s565gp18ddnbawhzix978p4yj11lp4vlaqs0dq52ww46f3byj"; depends=[MASS nlme survival]; }; JMI = derive2 { name="JMI"; version="0.1.0"; sha256="05phkwfb9v4g9jixlvbj6br7sbi64zvrgjwfr0v87ijddkxc9si9"; depends=[Rcpp RcppArmadillo]; }; @@ -2426,6 +2454,7 @@ in with self; { JSconsole = derive2 { name="JSconsole"; version="0.1.0"; sha256="1jpa48xb7hh4ap25sqrl67rzqra53qhcfwpfgs6hmpjnrld8n3ha"; depends=[rstudioapi V8]; }; JSmediation = derive2 { name="JSmediation"; version="0.2.1"; sha256="1y6s8fwdyaixvqa1p8nn1jf75k2dgv4p9kv59rwjrckq70s026x2"; depends=[broom data_table dplyr glue knitr magrittr MASS purrr rlang tibble]; }; JSparO = derive2 { name="JSparO"; version="1.5.0"; sha256="0n13arzf063x0sw0kmm86bny440jpijan4lh1ikxayrz2skg8zbz"; depends=[pracma]; }; + JUMP = derive2 { name="JUMP"; version="1.0.1"; sha256="0i84vpzgs9bj0idxxjl885x818hq23drxy0h2pl6zbyz2z1v331m"; depends=[Rcpp RcppArmadillo]; }; JWileymisc = derive2 { name="JWileymisc"; version="1.4.0"; sha256="1bgkhfda7p5alh8h2y804x5wvhksigg06hym9safxx15kmv1yxcn"; depends=[data_table digest emmeans extraoperators fst ggplot2 ggpubr ggthemes lavaan lme4 MASS mgcv mice multcompView psych quantreg rms robustbase VGAM]; }; JacobiEigen = derive2 { name="JacobiEigen"; version="0.3-4"; sha256="1jm63w2jn89pk725x3d9myq010mb0g5ir8vhv29mkiwgrqig6iw1"; depends=[Rcpp]; }; JamendoR = derive2 { name="JamendoR"; version="0.1.1"; sha256="0rrfbci413mqq53p5fyj8rjangdx21iyin6hzqkxyrxrv3n5mfbx"; depends=[dplyr httr jsonlite]; }; @@ -2435,7 +2464,7 @@ in with self; { Jmisc = derive2 { name="Jmisc"; version="0.3.1.1"; sha256="0fcch7rg8gn92855smd7h2andr33h9dnccjy12w2bx0px8rnqa0s"; depends=[]; }; JoF = derive2 { name="JoF"; version="0.1.0"; sha256="1my6fc4awrc822ibsvx3hiz4l49vp8dx0j05v56r7d27xizy8j0j"; depends=[]; }; JoSAE = derive2 { name="JoSAE"; version="0.3.0"; sha256="1vjxzbfs8a7kpmn2lb9dca67d4njmzjr3pl16s0r9ihmmxxwwili"; depends=[nlme]; }; - JointAI = derive2 { name="JointAI"; version="1.0.4"; sha256="1h92bkay1mjjmrjs0kjpxgz4swh3la7h5jir7d53cx7ghvk2zsgd"; depends=[coda future MASS mathjaxr mcmcse rjags rlang survival]; }; + JointAI = derive2 { name="JointAI"; version="1.0.5"; sha256="1f1dmdrm8i7la2ydlcpnl0gk1yxdgf9x7s802mgp6hjplcrgzf3q"; depends=[coda future MASS mathjaxr mcmcse rjags rlang survival]; }; JointModel = derive2 { name="JointModel"; version="1.0"; sha256="1zgs5c7saqyqxvxmhw5sxy5w67abq344aid6igw1da05bfy2az6h"; depends=[lme4 statmod survival]; }; Julia = derive2 { name="Julia"; version="1.3.4"; sha256="0fv2qdxn0nqr6i7y3q8kjqnyb66k63k4jcdrs0xq2h2rw5gxpfir"; depends=[]; }; JuliaCall = derive2 { name="JuliaCall"; version="0.17.5"; sha256="036rxp2lygvpxpykpxx2lqyyzidzzi95lv6g30n70hzy0agjym4j"; depends=[knitr Rcpp rjson]; }; @@ -2469,18 +2498,19 @@ in with self; { KScorrect = derive2 { name="KScorrect"; version="1.4.0"; sha256="1khvwc610yp3fd4fn0wcgqpzxg9g7sicjjmwvfcahs8qxn3m5vfa"; depends=[doParallel foreach iterators MASS mclust]; }; KTensorGraphs = derive2 { name="KTensorGraphs"; version="1.1"; sha256="1szl66ix6c6vb0zzyp404psglx3lk125903zc4za0qfzcic7a9p6"; depends=[]; }; KappaGUI = derive2 { name="KappaGUI"; version="2.0.2"; sha256="0vklny804xpd9r60j4a01j2gak8jizwjw0abf7yvbcalv3zbpb3k"; depends=[irr shiny]; }; + KaradaColor = derive2 { name="KaradaColor"; version="0.1.5"; sha256="0hndz1inl4s7vgkg570npk73zh9hglr7kwa1yrkgdsk5lf8l8z4m"; depends=[crayon ggplot2]; }; Karen = derive2 { name="Karen"; version="1.0"; sha256="1yy80j15lra1zmak3klvqspy9ikhr0v7csl88l9cpbdpp73972by"; depends=[abind expm gaussquad igraph MASS Matrix mvtnorm scales stringr tmvtnorm xtable]; }; KarsTS = derive2 { name="KarsTS"; version="2.4.1"; sha256="1km8321a8vzff26g3x2hvdv5ciyk3fdpcn7g1xqbsx96fzxyd22n"; depends=[circular forecast infotheo mgcv missForest MVN nonlinearTseries plot3D rgl stinepack stlplus tcltk2 tseries tseriesChaos zoo]; }; KbMvtSkew = derive2 { name="KbMvtSkew"; version="1.0.2"; sha256="14g27a0dkj4gpf5l2k96fd3aa21fz8b85lf5a1jxj0qgjmr4kib0"; depends=[]; }; Kcop = derive2 { name="Kcop"; version="1.0.0"; sha256="0p9ik4z2jc2ib70v8lxxa40f13jbqgq6bb9s7yx335na9l43h1j8"; depends=[copula dplyr gtools orthopolynom]; }; KenSyn = derive2 { name="KenSyn"; version="0.3"; sha256="0s8sq3caxn4swac81196dp52r9lbmxb3ni45yaxh53f5g34slsi8"; depends=[lme4 metafor nlme]; }; Kendall = derive2 { name="Kendall"; version="2.2.1"; sha256="1xmk95l4i3kj9jn0xh1chi2rj322k29jq14ra5pa7316gwf9vx2m"; depends=[boot]; }; - KernSmooth = derive2 { name="KernSmooth"; version="2.23-20"; sha256="0fgclmzk3ksjsh3j47jqzm3jhqrwn12rkp7f84yr6wr43q2pbsr0"; depends=[]; }; + KernSmooth = derive2 { name="KernSmooth"; version="2.23-21"; sha256="12qsy90cmcg8pdvcpasdskh82x9d83xdznibi9b7z1hkw8ccnqrx"; depends=[]; }; KernSmoothIRT = derive2 { name="KernSmoothIRT"; version="6.4"; sha256="0qqlmcd04m89pmhrbmxxx4lzzb6sksgrm0j8x7fs5r0sxdqy6rcp"; depends=[plotrix Rcpp rgl]; }; KernelKnn = derive2 { name="KernelKnn"; version="1.1.5"; sha256="1b361qqkicbdwcmh7fj8rfqqj5yaf2ygmh4hwy5qxbpw8zkagccj"; depends=[Rcpp RcppArmadillo]; }; Kernelheaping = derive2 { name="Kernelheaping"; version="2.3.0"; sha256="0nd8kbprpm2jrpnqr4xb4z8wklv5js2y3kdpjc2q0ay229hf85j8"; depends=[dplyr fastmatch fitdistrplus GB2 ks magrittr MASS mvtnorm plyr sp sparr]; }; Keyboard = derive2 { name="Keyboard"; version="0.1.3"; sha256="1yfcn1r0zngc1nlj5axqps8an66p1q1qmxwagxq2q15d9qipb5wh"; depends=[ggplot2 Iso Rcpp]; }; - KinMixLite = derive2 { name="KinMixLite"; version="2.0.8"; sha256="1bs1ywcj55fa18xkflimznsd7nw6mv08wygqhjfw7i2i7q2cghqj"; depends=[DNAmixturesLite gRaven gRbase pedtools ribd Rsolnp statnet_common]; }; + KinMixLite = derive2 { name="KinMixLite"; version="2.1.0"; sha256="17kjb12r35b42ghkv6mp0jk115gn2dlwc8cdf92cm9jjn4k9am9a"; depends=[DNAmixturesLite gRaven gRbase Matrix numDeriv pedtools ribd Rsolnp statnet_common]; }; KingCountyHouses = derive2 { name="KingCountyHouses"; version="0.1.0"; sha256="17l415v290lm99rsifpk6324mm1sk79ns4cvjkyh9ibj8n7l44c1"; depends=[]; }; Kmedians = derive2 { name="Kmedians"; version="1.2.0"; sha256="10akh0jbnk7hrgqp414p66ddlhs6rdgd1ifjx18wpnfn4c81xcnj"; depends=[capushe doParallel foreach genieclust ggplot2 Gmedian mvtnorm reshape2]; }; KnapsackSampling = derive2 { name="KnapsackSampling"; version="0.1.0"; sha256="17yzmd11k1n5iy54vbcvpzvkm8ypbl6n1kfi931wwrrcq9y7hg22"; depends=[lpSolve]; }; @@ -2495,7 +2525,7 @@ in with self; { KrigInv = derive2 { name="KrigInv"; version="1.4.2"; sha256="01i953b0xrqrwbgzv8giz4dmcbc18jni9whhkmpg8sxvhqac59ns"; depends=[anMC DiceKriging mvtnorm pbivnorm randtoolbox rgenoud]; }; Kurt = derive2 { name="Kurt"; version="1.1"; sha256="0fmd3m6pgsyf614wf11yclxl9zsac5jrffci5c2514wvs1slqw1p"; depends=[expm labstatR matrixcalc polynom]; }; L0Learn = derive2 { name="L0Learn"; version="2.1.0"; sha256="050r2rqmqgwmal53d82vi0nhnzzrm4q8mqz0pbpj77blflbqy740"; depends=[ggplot2 MASS Matrix Rcpp RcppArmadillo reshape2]; }; - L1pack = derive2 { name="L1pack"; version="0.41-2"; sha256="0j8sb2rbvd6nrijx18mhykgd4kj9032cwjcg23x12hr3rdlx56fb"; depends=[fastmatrix]; }; + L1pack = derive2 { name="L1pack"; version="0.41-24"; sha256="1zbiiawvm1jfmsab7kxz2rr969xbz2nxxx4piadp5s5ln8v4jxil"; depends=[fastmatrix]; }; L2DensityGoFtest = derive2 { name="L2DensityGoFtest"; version="0.6.0"; sha256="1fzfqfq77rf4hfrh1idb2nb67mwk9lwypxhr2qc1hiidvk060lq0"; depends=[boot fGarch mvtnorm nor1mix]; }; L2E = derive2 { name="L2E"; version="2.0"; sha256="1ar8jmi7nddp6f5rfh8zvh8w8zkigdf1zjzdr5fz8zqj2ny5hy30"; depends=[cobs isotone Matrix ncvreg osqp robustbase signal]; }; LA = derive2 { name="LA"; version="2.2"; sha256="12fhkrjcj5304pdpgmf8iilxgy5vnixqj3zb87csa4m22ibpkah4"; depends=[Rcpp RcppArmadillo]; }; @@ -2512,7 +2542,7 @@ in with self; { LCCR = derive2 { name="LCCR"; version="1.3"; sha256="07hrbras7721rb2q9c8qd9k6cn3ba16i06b30xnyjzq6my1wzpd5"; depends=[MASS]; }; LCF = derive2 { name="LCF"; version="1.7.0"; sha256="1n5gwnkj26b7w6bzapda049bd4aqb317cip05nf0vy04xjc8giyc"; depends=[quadprog]; }; LCFdata = derive2 { name="LCFdata"; version="2.0"; sha256="1x3vbr6hdviqvd6dxn1kb449g0q5zkfmjsmr5nxd2g82p69lv3xm"; depends=[]; }; - LCMCR = derive2 { name="LCMCR"; version="0.4.11"; sha256="11vcqjjlcps3nqfrmncfqdadhrwk7fvrnx6xqwnc6l12hr98hic0"; depends=[]; }; + LCMCR = derive2 { name="LCMCR"; version="0.4.13"; sha256="07gw8djwm352fmcr78mpqab1w4jpwpwb75cr3ay0nhnadzd9wsfg"; depends=[]; }; LCMSQA = derive2 { name="LCMSQA"; version="1.0.0"; sha256="14i2wvwghkwsbil70y2nil859ch41yri6hvdb3j1vcs5larmpfwx"; depends=[bslib bsplus data_table DT ggplot2 MSnbase plotly shiny shinycssloaders shinyjs shinyWidgets xcms]; }; LDABiplots = derive2 { name="LDABiplots"; version="0.1.2"; sha256="0vcc2s0qyib9l7sdflxbfanraxw5hqjlp24v8yg3z9i65y5gzbaw"; depends=[chinese_misc dplyr DT factoextra ggplot2 ggrepel glasso highcharter htmlwidgets ldatuning Matrix qgraph quanteda rvest shiny shinyalert shinyBS shinybusy shinycssloaders shinydashboard shinyjs shinyWidgets SnowballC stringr textmineR textplot tidyr topicmodels]; }; LDAShiny = derive2 { name="LDAShiny"; version="0.9.3"; sha256="0iql2fcg7fkyggdwmb6mhn54vhki6v206mkc5km41fjiqss2b4ni"; depends=[beepr broom chinese_misc dplyr DT highcharter htmlwidgets ldatuning plotly purrr quanteda shiny shinyalert shinyBS shinycssloaders shinydashboard shinyjs shinyWidgets SnowballC stringr textmineR tidyr tidytext tm topicmodels]; }; @@ -2539,13 +2569,13 @@ in with self; { LIM = derive2 { name="LIM"; version="1.4.7"; sha256="0d9bgyd0mnag8wds993dsvlbpkhyakydlzwc3nghxzv2n8504hjj"; depends=[diagram limSolve]; }; LINselect = derive2 { name="LINselect"; version="1.1.3"; sha256="1qxqwph5ja2kf1s4ggsv8w6hjgf9mr53a0gahhjix2v78309z42g"; depends=[elasticnet gtools MASS mvtnorm pls randomForest]; }; LIStest = derive2 { name="LIStest"; version="2.1"; sha256="1gk253v3f1jcr4z5ps8nrqf1n7isjhbynxsi9jq729w7h725806a"; depends=[]; }; - LKT = derive2 { name="LKT"; version="1.3.0"; sha256="1a2r70j4pbnvcriwpaaf3hp0mkm08nmk4nxbzfhhw4hzr09k8nz6"; depends=[cluster data_table glmnet glmnetUtils HDInterval LiblineaR lme4 Matrix SparseM]; }; + LKT = derive2 { name="LKT"; version="1.5.0"; sha256="1hpvg10kj4c8cixpvgyp9wzy7h6fv02y9zf6rbply537lyni2igb"; depends=[cluster crayon data_table glmnet glmnetUtils HDInterval LiblineaR lme4 Matrix pROC SparseM]; }; LLM = derive2 { name="LLM"; version="1.1.0"; sha256="0kxppzaim7cmjawg5rjih4dsz8adq0asairgq3vx5lyjppb2cybx"; depends=[partykit reghelper RWeka scales stringr survey]; }; LLSR = derive2 { name="LLSR"; version="0.0.3.1"; sha256="0nci8p3gw35a3ifwrq7r2jih718p2iwmmh3495qnh0fk304y7kbi"; depends=[crayon digest dplyr ggplot2 minpack_lm nleqslv openxlsx rootSolve svDialogs svglite]; }; LMD = derive2 { name="LMD"; version="1.0.0"; sha256="0yizv25ssw9a2ydwlabgx6rfksi3bfz6ay4508fz21j18sq49dfy"; depends=[EMD ggplot2 patchwork]; }; LMERConvenienceFunctions = derive2 { name="LMERConvenienceFunctions"; version="3.0"; sha256="0jg889qh5a9wdi01yiw6z7kivs9dzh5dcq39f4zifdpqzglhshzb"; depends=[fields LCFdata lme4 Matrix mgcv]; }; LMMELSM = derive2 { name="LMMELSM"; version="0.2.0"; sha256="0m57hsfpgxch5lmpdxqp720jv18as12drpx1p5x3y4w0navslslz"; depends=[BH Formula loo MASS nlme Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; - LMMsolver = derive2 { name="LMMsolver"; version="1.0.4"; sha256="0yqgirl01kjgday8g4jj5ixa07qs740q9g97w41mnysmnxnlmmpd"; depends=[agridat ggplot2 maps Matrix Rcpp sp spam]; }; + LMMsolver = derive2 { name="LMMsolver"; version="1.0.5"; sha256="14ppnj23l7rh71pkw97qcb31las10ra8ydlbpm6s8q18c21lpvm5"; depends=[agridat ggplot2 maps Matrix Rcpp sp spam]; }; LMMstar = derive2 { name="LMMstar"; version="0.9.0"; sha256="137lvwy2sm7ldi62jmhnlxa788636q35g7i68qnn9v6gnjd7q9v3"; depends=[copula emmeans ggplot2 lava Matrix multcomp nlme numDeriv pbapply rlang sandwich]; }; LMN = derive2 { name="LMN"; version="1.1.3"; sha256="0qnc74m2g4fl1cb39xmanvv1hwcnk0169xn4h4phlhxgr0313m63"; depends=[Rcpp RcppEigen SuperGauss]; }; LMest = derive2 { name="LMest"; version="3.1.1"; sha256="08s99l1460gmw6477p44ad9q7gsll9x3srnlhrf0j0pplf0x2s0k"; depends=[diagram Formula MASS mclust mix MultiLCIRT mvtnorm scatterplot3d]; }; @@ -2574,7 +2604,7 @@ in with self; { LRMF3 = derive2 { name="LRMF3"; version="0.1.0"; sha256="0j9hnin3yic118766if6gysq0g4mkqw40b0873g4ggjkgxndxrqn"; depends=[glue Matrix]; }; LRQMM = derive2 { name="LRQMM"; version="1.2.3"; sha256="149z6wggyz9p39vanw5m2iw5v69spxdj8ciarrswj5ddvkli7940"; depends=[GeneticsPed kinship2 Matrix MCMCglmm quantreg R_matlab rsvd SparseM sparsesvd]; }; LRTH = derive2 { name="LRTH"; version="1.3"; sha256="08vakwb7ca7956gifynzijka441yyx0wd5bq5jfhz56lzcxgfb99"; depends=[]; }; - LRTesteR = derive2 { name="LRTesteR"; version="1.0.2"; sha256="0lqn59ms8pyz6pg9y9mzqvfmizv7fnyxs5xszharwkv4jnjgb1cp"; depends=[rlang statmod]; }; + LRTesteR = derive2 { name="LRTesteR"; version="1.1.0"; sha256="0wq4kjldrvc5m035qfmgpvfqlk50iji7ckgilnxqqiws8mmxjyic"; depends=[rlang statmod]; }; LRcontrast = derive2 { name="LRcontrast"; version="1.0"; sha256="0fs06p853r42nws2camvs87py39hb1ssxhfm6d5n9kkq81snfx4q"; depends=[DoseFinding]; }; LS2W = derive2 { name="LS2W"; version="1.3.6"; sha256="0qsrf9x45z0waiv10fh0a8rw0zyr5raj6l832yhq76vd9gjfpn9i"; depends=[MASS wavethresh]; }; LS2Wstat = derive2 { name="LS2Wstat"; version="2.1-4"; sha256="1y5q5sqzx3iwxdmxf6yz5c3hbw7sihxgr8sibr0v8s9dc6r4a2sf"; depends=[LS2W matrixStats spdep]; }; @@ -2593,7 +2623,7 @@ in with self; { LSVAR = derive2 { name="LSVAR"; version="1.2"; sha256="0lhx9a5l3s2c5isd3fhvxxfdazdxddpkg07hk4rckvhmxln7j1dj"; depends=[igraph mvtnorm pracma]; }; LSWPlib = derive2 { name="LSWPlib"; version="0.1.0"; sha256="1z4lcpmbm3wdzbi04flvspkimk4jfhjqi5pd0ab4pbb0ii1z26hs"; depends=[waveslim wavethresh]; }; LSX = derive2 { name="LSX"; version="1.3.1"; sha256="043w10fm0dbafckjbb08h9zp30fm2q45ifz0b4w7jzzv6a6ngxmp"; depends=[digest ggplot2 ggrepel irlba locfit Matrix proxyC quanteda quanteda_textstats reshape2 rsparse RSpectra rsvd stringi]; }; - LTASR = derive2 { name="LTASR"; version="0.1.1"; sha256="0mxm6raf1xfpzd0fdbd30cfxfc47zhwv5cxlp46pngby034wr175"; depends=[dplyr knitr lubridate magrittr purrr readr rlang stringr tidyr XML zoo]; }; + LTASR = derive2 { name="LTASR"; version="0.1.2"; sha256="1cq00w9pg4mmgsg7ydm9azr0f9hgxa7vskpfrmh90j6xixqmpn4c"; depends=[dplyr knitr lubridate magrittr purrr readr rlang stringr tidyr XML zoo]; }; LTPDvar = derive2 { name="LTPDvar"; version="1.2.1"; sha256="0sdsdx71mpian7gfw7brkzyjjr7bai7dsdifwnib3jpq9p7w7n84"; depends=[]; }; LTRCtrees = derive2 { name="LTRCtrees"; version="1.1.1"; sha256="1k16m2fpwn8m4dvm1b82srf3bgkvkwf6kcjpwjgkdappifc7p5m8"; depends=[icenReg Icens interval inum partykit rpart survival]; }; LUCIDus = derive2 { name="LUCIDus"; version="2.2.1"; sha256="00qzx94hwkhm5yszkx1wkj592img5n504ybld272x0wps2bk6snp"; depends=[boot glasso glmnet jsonlite mclust mix networkD3 nnet progress]; }; @@ -2606,7 +2636,7 @@ in with self; { LabRS = derive2 { name="LabRS"; version="0.1.0"; sha256="1a9qafimia83qldsif5wfqx273mvqbx22p5i0hg8n4jvj4vzpy2w"; depends=[knitr]; }; LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="3.3.1"; sha256="1wdfcqjzjc0vwgzv85dfny2r3gsi26wmk85s75bz6hbnwp836sav"; depends=[data_table maptools rgdal rgeos sp spdep tmap]; }; LagSequential = derive2 { name="LagSequential"; version="0.1.1"; sha256="1i8h4acfx21r0kxbg4i0k48kvhwy2abri191wp4b22amhz4vqyyd"; depends=[]; }; - Lahman = derive2 { name="Lahman"; version="10.0-1"; sha256="0k8vwcqnkp24n3micwwc63lagpll1np749az2imj4zyyhd8hyq7n"; depends=[dplyr]; }; + Lahman = derive2 { name="Lahman"; version="11.0-0"; sha256="0jzxk9ykjm4mxwf2adqdy6gbv80569ynkqsrppfn8ag9d5a3k8bv"; depends=[dplyr]; }; LakeMetabolizer = derive2 { name="LakeMetabolizer"; version="1.5.5"; sha256="09j4k5r441jpbxv9x6j9j5mlcl7yh2ydhfy55wx614wdlv862jn9"; depends=[plyr rLakeAnalyzer]; }; LambertW = derive2 { name="LambertW"; version="0.6.7-1"; sha256="0cdrq2nrvji8l5blswkffymm7cbjk5jzzx16js2a516cm3gjwxk4"; depends=[ggplot2 lamW MASS RColorBrewer Rcpp reshape2]; }; Landmarking = derive2 { name="Landmarking"; version="1.0.0"; sha256="1gkfv1xcjkbh417kv9dkflfg6agvgrd893v8ams25c2pazfmrmnz"; depends=[dplyr ggplot2 mstate nlme pec prodlim riskRegression survival]; }; @@ -2670,7 +2700,7 @@ in with self; { LogisticCurveFitting = derive2 { name="LogisticCurveFitting"; version="0.1.0"; sha256="0b564jc3gv6lnzyxmrmbrk9pa8c6v9vbn2q68h9v0d02n58h1kbl"; depends=[]; }; LogisticRCI = derive2 { name="LogisticRCI"; version="1.1"; sha256="158rl8jjmmhnja287i29rjiq309niwbvxmzx4f9lkl83nxn4mzf7"; depends=[]; }; LongCART = derive2 { name="LongCART"; version="3.2"; sha256="05jzl4wb52fa9781pn8a3wqdnpyfrr9fv7h3xfz81xm5bl5d8mf1"; depends=[Formula magic nlme rpart survival survminer]; }; - LongDat = derive2 { name="LongDat"; version="1.1.0"; sha256="1sqfmdv5agyvlw1y3yiv8kxi1040gq75qj4ln1jgb9lsmhdlfpyd"; depends=[bestNormalize car dplyr effsize emmeans ggplot2 glmmTMB lme4 magrittr MASS patchwork reshape2 rlang rstatix stringr tibble tidyr]; }; + LongDat = derive2 { name="LongDat"; version="1.1.1"; sha256="1k8rl6jv4xzsm620wf373ds6l8fbb5ff07rgbp0bgqrymvwdf1jc"; depends=[bestNormalize car dplyr effsize emmeans ggplot2 glmmTMB lme4 magrittr MASS patchwork reshape2 rlang rstatix stringr tibble tidyr]; }; LongMemoryTS = derive2 { name="LongMemoryTS"; version="0.1.0"; sha256="0n378sad8i283vs7q63spdhwpwjly2d5zj15d4v2085j7sc7z8vi"; depends=[fracdiff longmemo mvtnorm partitions Rcpp RcppArmadillo]; }; LongituRF = derive2 { name="LongituRF"; version="0.9"; sha256="0h70g0qhv0rgz40i58ykrcak1wibbvya7fql0v79xkd21217y1av"; depends=[latex2exp mvtnorm randomForest rpart]; }; LoopAnalyst = derive2 { name="LoopAnalyst"; version="1.2-6"; sha256="1gy9v6qiwkwbwp4snif2imf6zn50ffjrig54ln57c5v5pk3phnvv"; depends=[nlme]; }; @@ -2678,7 +2708,6 @@ in with self; { LoopRig = derive2 { name="LoopRig"; version="0.1.1"; sha256="11rarb9fg8abc4dpd8sd8safqw3v6g8k6rcrg2nw97xppwcz8c6b"; depends=[GenomicRanges IRanges S4Vectors]; }; LorenzRegression = derive2 { name="LorenzRegression"; version="1.0.0"; sha256="1jxz753bcq8b16ncjk6v8c8ylv8brlqd90fdzn9lappm1k4y0r46"; depends=[doParallel foreach GA ggplot2 knitr locpol MASS Rcpp RcppArmadillo Rearrangement]; }; LotkasLaw = derive2 { name="LotkasLaw"; version="0.0.1.0"; sha256="11kq52yavicimp7ll7ljrs69a5fxf68ydb9md7v6b02iw5mwbmz7"; depends=[]; }; - LowRankQP = derive2 { name="LowRankQP"; version="1.0.5"; sha256="0xqygbcdk7sizlch4rvq6klm9k0h6vp77v09zfgcz0rhrxqv0nby"; depends=[]; }; LowWAFOMNX = derive2 { name="LowWAFOMNX"; version="1.1.1"; sha256="0f75qsv6pisgvk39yagzfxscnyfsgh63rmhp4gpybpl0pqmjp48x"; depends=[Rcpp RSQLite]; }; LowWAFOMSobol = derive2 { name="LowWAFOMSobol"; version="1.1.1"; sha256="1ym3i2m1am356di9lcp5nfmxq0np3c4bwsv6bbmf7hg02j7dhwi4"; depends=[Rcpp RSQLite]; }; LqG = derive2 { name="LqG"; version="0.1.0"; sha256="08v6qyvg96jn096xvayivywllcja782mg4zi4gcaaq12hhwdhl1m"; depends=[]; }; @@ -2690,23 +2719,25 @@ in with self; { MACER = derive2 { name="MACER"; version="0.2.1"; sha256="02qqcaccw671773lp1zva340fd6wqbsx9v0yxy62cbjnyh3k260r"; depends=[ape ggplot2 httr pbapply png rentrez]; }; MACP = derive2 { name="MACP"; version="0.1.0"; sha256="097qqqv0xmkm8cc5a2zr96lnnrkw92nzr3cj4sfnfa6whlpi72fn"; depends=[caret dplyr fmsb ggplot2 Hmisc igraph lsa pROC PRROC stringr tibble tidyr WGCNA zoo]; }; MADPop = derive2 { name="MADPop"; version="1.1.5"; sha256="0r2yicpzcahx1bw93j0z601hzkcyknvf3657qm76lxsw0lb4lj1r"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; + MAGEE = derive2 { name="MAGEE"; version="1.3.0"; sha256="0zgzns4vjr70p1wczar28dmkx8yms74z7vq1c4k30prjfsi1335r"; depends=[CompQuadForm data_table foreach GMMAT MASS Matrix Rcpp RcppArmadillo SeqArray SeqVarTools]; }; MAGNAMWAR = derive2 { name="MAGNAMWAR"; version="2.0.4"; sha256="1asr18byrgy6bkpxpmnkczgr3dam6ymf30lw6izq112krc891bg4"; depends=[ape coxme doParallel dplyr foreach iterators lme4 multcomp plyr qqman seqinr survival]; }; MAINT_Data = derive2 { name="MAINT.Data"; version="2.7.1"; sha256="0hjrz25jg4a6kcap01rjjgfvvmg1padd57wgjxihaxpsm7pb0fq9"; depends=[GGally ggplot2 MASS mclust miscTools pcaPP Rcpp RcppArmadillo robustbase rrcov sn withr]; }; MAKL = derive2 { name="MAKL"; version="1.0.1"; sha256="0xljmnwl8v3y68xmfm5vbycsa5y5yi0p0n207hg7zjvfaf6gbfhj"; depends=[AUC grplasso]; }; MALDIquant = derive2 { name="MALDIquant"; version="1.22.1"; sha256="0721j8lzv6ywv0hf8rjw446dmvl18gm5ymf5a35fg9vnprfsalha"; depends=[]; }; MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.13"; sha256="0xxdvfg9h6vl2g2wlxfmrskn8576rd958mn5jblryyqg9xbanlhr"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; }; MALDIrppa = derive2 { name="MALDIrppa"; version="1.1.0-1"; sha256="1gm5w614r66av6bvfiad5964hsr6hb0c03c90ck9lb251bns98wm"; depends=[lattice MALDIquant robustbase signal waveslim]; }; - MAMS = derive2 { name="MAMS"; version="2.0.0"; sha256="05pnrxziwsgnhy05fac8smxcm65zxi2dl7lar2jakiamd2hxv3c2"; depends=[future future_apply mvtnorm]; }; + MAMS = derive2 { name="MAMS"; version="2.0.1"; sha256="1mrdn9klqjpf74wvb5brm79jy260qb1n12rpqmqd38i5hrkpcqsx"; depends=[future future_apply mvtnorm]; }; MANCIE = derive2 { name="MANCIE"; version="1.4"; sha256="0940xl3z5bca6hcnj2bj341l79wajilxlxzmyz3dlgrz0b3bbdmm"; depends=[]; }; MANOVA_RM = derive2 { name="MANOVA.RM"; version="0.5.3"; sha256="0gdyd7avdc7jh1hp03wlbqi5krijxrgargkivq97qyk83zf387dx"; depends=[data_table ellipse magic MASS Matrix multcomp plotrix plyr]; }; MAP = derive2 { name="MAP"; version="0.1.3"; sha256="19d0m30jh50ibbdgvcvq1vsz5i1vf8qvl0d0nbqklvnndch61jhk"; depends=[flexmix Matrix]; }; MAPA = derive2 { name="MAPA"; version="2.0.5"; sha256="09szm5ilxfg893smh72yhbv306lwr3cy1jq7pghg0mipha6wgdxp"; depends=[forecast RColorBrewer smooth]; }; MAPITR = derive2 { name="MAPITR"; version="1.1.2"; sha256="0vmsdspja4qfs2z14p835g78zggk8h54v25cn268z1hg2p6zxish"; depends=[CompQuadForm doParallel Rcpp RcppArmadillo]; }; MARSANNhybrid = derive2 { name="MARSANNhybrid"; version="0.1.0"; sha256="1xs0gjdjl9c5i1i8ds9s3sq0764267h6gngkbwimfa8miq287idm"; depends=[earth neuralnet]; }; - MARSS = derive2 { name="MARSS"; version="3.11.4"; sha256="10mf1vs51yqqg6s2435j84xbaxvr6wdraha07mqlr2rmprgl5a0r"; depends=[KFAS mvtnorm nlme]; }; + MARSGWR = derive2 { name="MARSGWR"; version="0.1.0"; sha256="1c64xlyy7bw4na3g0sqh9b0grkp3qhmp11cbsb7jv30gjwrkgj9b"; depends=[earth numbers qpdf]; }; + MARSS = derive2 { name="MARSS"; version="3.11.8"; sha256="0cmnybj6dqrmasc3y89azs10iq521p86l5sf0w3arypk6jjvif9g"; depends=[generics KFAS mvtnorm nlme]; }; MARSSVRhybrid = derive2 { name="MARSSVRhybrid"; version="0.1.0"; sha256="10b8d75q5hiqf8id1qsvjx379xyx4vphq5r1iwvykjaw4zxbyx65"; depends=[e1071 earth]; }; MARVEL = derive2 { name="MARVEL"; version="1.4.0"; sha256="1zsgj3dbqpfjv2x6xpp75n9jxf04svqffiy9gxlbxkns3clwqz5i"; depends=[ggplot2 Matrix plyr scales]; }; - MASS = derive2 { name="MASS"; version="7.3-58.3"; sha256="1bkrbhm230nm4px1rw93mxhigpvivinj22f7r4mx786whaamkra2"; depends=[]; }; + MASS = derive2 { name="MASS"; version="7.3-60"; sha256="1hphf8m1zny4582rvfnl262ydf3f2w0kayxj2b8n855hx87l20mq"; depends=[]; }; MASSExtra = derive2 { name="MASSExtra"; version="1.2.2"; sha256="0agr8kf7hh7mjpa98y486bql9wxjwif9f03wz468srzz8jjin39h"; depends=[demoKde MASS]; }; MASSTIMATE = derive2 { name="MASSTIMATE"; version="2.0-1"; sha256="1dvidwjw4zgflms5njbd9n85g1gbgfg6hk0fb63q5n65iyxxfmyh"; depends=[]; }; MAT = derive2 { name="MAT"; version="2.3.1"; sha256="0jr08j96agqw4hzdbk9ixdpngh60bd7w47192d0zm3byymcxpb0y"; depends=[Rcpp RcppArmadillo]; }; @@ -2718,7 +2749,7 @@ in with self; { MB = derive2 { name="MB"; version="0.1.1"; sha256="15ynrx2w5h5m18ws63syp29n8qc9dfk8q0riidskynijz3p7wz7w"; depends=[tibble]; }; MBA = derive2 { name="MBA"; version="0.1-0"; sha256="1bw3a8xcbjmhb3mfzblx8kpj3jiag8c95wm5g6xy52xrql2rj0vq"; depends=[BH]; }; MBAnalysis = derive2 { name="MBAnalysis"; version="0.1.0"; sha256="1hgx6lgyjbiq6y5cw720mnavll6mfrarwvhsm7pbr25q1d37jmg8"; depends=[ggplot2 ggrepel]; }; - MBC = derive2 { name="MBC"; version="0.10-5"; sha256="0iks5nhk4im7l1dxgwcwi4mlnh271zfq9mrlaklpk38zakzyf2n4"; depends=[energy FNN Matrix]; }; + MBC = derive2 { name="MBC"; version="0.10-6"; sha256="1680lnzga21qk5yddrciiaifxkkb9kk744m9fbj0hg5xw6v9dxic"; depends=[energy FNN Matrix]; }; MBCbook = derive2 { name="MBCbook"; version="0.1.1"; sha256="0jmvgyzrahnxfkwdn86k3ffk0zfbbd34ya4zmlnsmp2m9xds7lgn"; depends=[MASS mclust mvtnorm Rmixmod]; }; MBESS = derive2 { name="MBESS"; version="4.9.2"; sha256="0cq4z7nx361rcw42jflrrdjbqs2q5973dlvhcr7i2wbkj3gzkwla"; depends=[boot lavaan MASS mnormt nlme OpenMx sem semTools]; }; MBHdesign = derive2 { name="MBHdesign"; version="2.2.2"; sha256="1z5jg4gb9jkc7cjy0413zj3lszqb28zx39bfmk59lls9d016iaak"; depends=[class geometry mgcv mvtnorm randtoolbox raster]; }; @@ -2726,12 +2757,11 @@ in with self; { MBNMAdose = derive2 { name="MBNMAdose"; version="0.4.1"; sha256="1825vqdwzachig7fg3s8gq64m1gdh9gjccv5y9r0qh9x5015s0f1"; depends=[checkmate dplyr igraph magrittr R2jags Rdpack reshape2 rgeos rjags scales]; }; MBNMAtime = derive2 { name="MBNMAtime"; version="0.2.3"; sha256="0i4bgfzdxy4xap3yalphkbsq5pz0yl407nvkns6q3f0y90maq29r"; depends=[checkmate dplyr gridExtra knitr magrittr R2jags Rdpack reshape2 rjags]; }; MBSGS = derive2 { name="MBSGS"; version="1.1.0"; sha256="1h5vhmpgrqza12j7ivhwgd5wyb7kkb8mjbxl5w756vyid8g03flz"; depends=[MASS MCMCpack mgcv mnormt truncnorm]; }; - MBSP = derive2 { name="MBSP"; version="3.0"; sha256="0dya1bx3hz8hddf55m67dhkyx0ick71pb1vc6iv7rdf5hf7iymzn"; depends=[GIGrvg MASS MCMCpack]; }; + MBSP = derive2 { name="MBSP"; version="4.0"; sha256="1rfjykm2363m67ycm9vsxnddcsmlqxg5gx8sfg9ma8alwnh0s3fb"; depends=[GIGrvg MCMCpack mvtnorm]; }; MBmca = derive2 { name="MBmca"; version="1.0.1-3"; sha256="08ls1rc440jjmbwm6nx09xyr8nb8q6wwid0dyvb97fv4l85qwn19"; depends=[chipPCR robustbase]; }; MCARtest = derive2 { name="MCARtest"; version="1.0"; sha256="0gqhcr412pzshdsbpivbnr0afr4bn5d1133vy8alym1hbpklcbrr"; depends=[Epi gtools lpSolve rcdd Rdpack]; }; MCAvariants = derive2 { name="MCAvariants"; version="2.6"; sha256="19wnkk7bknj5yd0s63ssybyzbs7x022wyr444hlinw8b181x57f3"; depends=[ggplot2 ggrepel gridExtra plotly]; }; MCBackscattering = derive2 { name="MCBackscattering"; version="0.1.1"; sha256="0vvcqjrh8psl480s4q2830rzm2bwy9mmvk9kipp72lzln51qnha6"; depends=[]; }; - MCDA = derive2 { name="MCDA"; version="0.0.24"; sha256="08xghwzb19ynzvl8l8z14lm97ggw5x05czjljhvm2ws4sknjpqy7"; depends=[combinat ggplot2 glpkAPI plyr RColorBrewer Rglpk triangle]; }; MCI = derive2 { name="MCI"; version="1.3.3"; sha256="1wn8lcr5sq3697nsmly6syb9jv7p99ks0fy933ff5rx54x3rf9hz"; depends=[]; }; MCID = derive2 { name="MCID"; version="0.1.0"; sha256="034r4qxbqnl9hhkpv9r79p26lzj5qh0379ya43ynyvbbi8b8z3rl"; depends=[]; }; MCL = derive2 { name="MCL"; version="1.0"; sha256="1w36h4vhd525h57pz6ik3abbsrvxnkcqypl2aj1ijb6wm7nfp4ri"; depends=[expm]; }; @@ -2743,17 +2773,18 @@ in with self; { MCMCpack = derive2 { name="MCMCpack"; version="1.6-3"; sha256="1cwdjn43b9hxpxf9mnas583myhk6r2258mh57f0zsc8bd4hbl56b"; depends=[coda lattice MASS mcmc quantreg]; }; MCMCprecision = derive2 { name="MCMCprecision"; version="0.4.0"; sha256="0r0qchiv61sk3drrb0rhwsk55gci4w343hd2gsvclrlyb8r9qhaf"; depends=[combinat Matrix Rcpp RcppArmadillo RcppEigen RcppProgress]; }; MCMCtreeR = derive2 { name="MCMCtreeR"; version="1.1"; sha256="00r6f62h7ryil7qxd25icvkqypjjssjsrz4i5sbqsnw5cdy5al8z"; depends=[ape coda sn]; }; - MCMCvis = derive2 { name="MCMCvis"; version="0.15.5"; sha256="1sh8znwk2s6gx7q6h1ps5yid24ywj2fpng0c7nckrfkywb5h5j14"; depends=[coda colorspace overlapping rstan]; }; + MCMCvis = derive2 { name="MCMCvis"; version="0.16.0"; sha256="0sp6fpbsh485yybhxpaffvjbx4yybxkd7lj6haq8q02h2sjdy02c"; depends=[coda colorspace overlapping rstan]; }; MCPAN = derive2 { name="MCPAN"; version="1.1-21"; sha256="0q1m0xg8825q9zjwxcz2h2n0dyr21q5bk29qbqpdhirlwm6f1a51"; depends=[magic MCMCpack multcomp mvtnorm plyr]; }; MCPMod = derive2 { name="MCPMod"; version="1.0-10.1"; sha256="0j15dpxy62vwbd6pcsvkbpi1nklh0yjzwf53kcmv4jhj0v6xmpp9"; depends=[lattice mvtnorm]; }; - MCPModBC = derive2 { name="MCPModBC"; version="1.0"; sha256="0mg7lzf5xvlaaxj4iwkwibw9sbp44dnizw9rlv1az4wg5yl4bhkn"; depends=[doParallel doRNG DoseFinding dplyr foreach nleqslv rlang survival]; }; + MCPModBC = derive2 { name="MCPModBC"; version="1.1"; sha256="0gzcxn3pf86k32ccvbsh4g5awcxcnsr5c48lkyrpqgwr0k3g0sjs"; depends=[doParallel doRNG DoseFinding dplyr foreach nleqslv rlang survival]; }; MCPModGeneral = derive2 { name="MCPModGeneral"; version="0.1-1"; sha256="0izhbiivlb818ak49hl1f7li1chlyrxk5f80cmw4zkim3l6ddaxq"; depends=[DoseFinding MASS]; }; MCPtests = derive2 { name="MCPtests"; version="1.0.1"; sha256="1lzlvzw60fb0mllbl0dx8s30zigzbl9shjas629syb9yw55ypxa2"; depends=[doParallel foreach SMR writexl xtable]; }; MCS = derive2 { name="MCS"; version="0.1.3"; sha256="1kiz1jq1bm2n8f33nsybp5jfrzzl9xbsi3m9l8818ybmph99xms6"; depends=[]; }; MCSim = derive2 { name="MCSim"; version="1.0"; sha256="1nqry41qa5c02an5fxm3y1g3w1vcqjgsy1an95i3szz1w1ndaj14"; depends=[CircStats MASS]; }; MChtest = derive2 { name="MChtest"; version="1.0-3"; sha256="1b3p6ry8gkvyphakn3504ibl2x8dbhx95saild0mj0iwm3sjyspf"; depends=[]; }; MDBED = derive2 { name="MDBED"; version="1.0.0"; sha256="1r3sizb2mqd4pqjy25krwmsjfkr6cl7lkd8db5jn3hgxx3qh6sgc"; depends=[doParallel foreach ggplot2 lattice orthopolynom psych Rdpack]; }; - MDFS = derive2 { name="MDFS"; version="1.5.0"; sha256="08iz27s5gc86izpzfxx2x9qld8d1ann3i6bnfwjz9ay4bzbpgij7"; depends=[]; }; + MDEI = derive2 { name="MDEI"; version="1.0"; sha256="1bj9cp73lyj2dzcycf5a196a3d8swblhxs4qwsyc7vmy4pwpxq43"; depends=[MASS ranger Rcpp RcppArmadillo splines2]; }; + MDFS = derive2 { name="MDFS"; version="1.5.3"; sha256="0gazmcgkgz915s3ljjdksm0bw4z6f4fz9qfzibdq6wscwcg9kfjn"; depends=[]; }; MDMAPR = derive2 { name="MDMAPR"; version="0.2.3"; sha256="0w2n6qrjvyzf2wc1yw8a8k027g3y3w2k0z6wkwnj1p8q5zg24c66"; depends=[berryFunctions bslib DBI dplyr DT ggplot2 htmltools htmlwidgets leaflet leaflet_extras plotly reactable readxl RMySQL shiny shinydashboard shinyjs shinyWidgets writexl xfun]; }; MDMR = derive2 { name="MDMR"; version="0.5.1"; sha256="1pv57xl7pjsqxz1j8mnfmjaa36mlr749yb4c44ppdrx6khvw662x"; depends=[car CompQuadForm lme4]; }; MDOLS = derive2 { name="MDOLS"; version="1.0"; sha256="02fkrv6yn2r0ryphvxhlnv05xxq3j824ijnj75dag3v9kinx1ar2"; depends=[]; }; @@ -2788,6 +2819,7 @@ in with self; { MGMS2 = derive2 { name="MGMS2"; version="1.0.2"; sha256="04f1ng4s163x7gvy1iaf0j8pzs0pm2r2saji0srbp2jyhrj68d7z"; depends=[MALDIquant MALDIquantForeign]; }; MGSDA = derive2 { name="MGSDA"; version="1.6"; sha256="03n7ngfbh87hhgpkjkc1a0zjslr0k9zip1prvbwhyqkfq21zajbr"; depends=[MASS]; }; MHCtools = derive2 { name="MHCtools"; version="1.5.1"; sha256="0lybzp6i62cd6j67k1j1s4gdhkl4whrqbxjk4dhk5jv09iba504v"; depends=[mgcv openxlsx]; }; + MHD = derive2 { name="MHD"; version="0.1.1"; sha256="0gm80ags0916j0iynr2zbn539bafrx4ni0407v222g04c323vs7c"; depends=[distory manifold nloptr plyr Rcpp]; }; MHDA = derive2 { name="MHDA"; version="1.2"; sha256="1m8lz8jxf2bs8np4pwjh70yn955qa8g9xi1blwbwp8s72yjs78ll"; depends=[]; }; MHTdiscrete = derive2 { name="MHTdiscrete"; version="1.0.1"; sha256="0czpsk4jiwbzd6g2dwssmggsdhwchikmc1skv48d9j4xvglns7yw"; depends=[]; }; MHTmult = derive2 { name="MHTmult"; version="0.1.0"; sha256="1y3vh2kab6nfkiz4nzdhrpy9h6drk1ibfd2h62hpr3y09z9a2yld"; depends=[]; }; @@ -2806,10 +2838,10 @@ in with self; { MKMeans = derive2 { name="MKMeans"; version="2.1"; sha256="1zhas96xvjyphmrs48k3nza1ayv9nfj0c760ifb57p8yk28m0bfy"; depends=[]; }; MKclass = derive2 { name="MKclass"; version="0.3"; sha256="0sw0h99k24418iqvvq247kg5558y9mgashr5amay7gbf2va79v6j"; depends=[]; }; MKdescr = derive2 { name="MKdescr"; version="0.8"; sha256="0y4mg3lg94nvyvj8rns5lffd6qjw1yn6yw8kn03n94rig857amwp"; depends=[ggplot2 scales]; }; - MKinfer = derive2 { name="MKinfer"; version="1.0"; sha256="1ravxvjr6c70c79780f53744808d53h3c924h9w2d1wmrn2nqcwz"; depends=[arrangements boot exactRankTests ggplot2 MKdescr nlme]; }; + MKinfer = derive2 { name="MKinfer"; version="1.1"; sha256="0wlvlh31qwxsk00zszbzrdhk7gx226i7cyhv35h9wnawmyrxkb5g"; depends=[arrangements boot exactRankTests ggplot2 miceadds MKdescr nlme]; }; MKmisc = derive2 { name="MKmisc"; version="1.9"; sha256="09kdwsfx5w3q88jbnxbaxzbzyx9fhhphqqaxn5qghhh1z2vpmy93"; depends=[ggplot2 limma RColorBrewer robustbase scales]; }; MKomics = derive2 { name="MKomics"; version="0.7"; sha256="0ck8i7ip12bb6wilmwhdrbdmf56ymm3rp6973lr1p4bc2m2kvhif"; depends=[circlize ComplexHeatmap limma RColorBrewer robustbase]; }; - MKpower = derive2 { name="MKpower"; version="0.5"; sha256="1yr9yk7x8da2b8hj71v4f5c2nikljbr6ayqp004whdi2bh67v95n"; depends=[coin ggplot2 matrixTests MKdescr MKinfer qqplotr]; }; + MKpower = derive2 { name="MKpower"; version="0.7"; sha256="0685f82vlmf789j3jm4d4193ccihs5qywl4d4cng3m1r9x57yv8d"; depends=[coin ggplot2 matrixTests MKdescr MKinfer qqplotr]; }; ML_MSBD = derive2 { name="ML.MSBD"; version="1.2.1"; sha256="1cpwq0vilbyz837d8k8pjipw3cwdsggbs88nwp827s4w2f1m7pap"; depends=[ape foreach]; }; ML2Pvae = derive2 { name="ML2Pvae"; version="1.0.0.1"; sha256="089cl5mcf06zxs26grk0aqmd0xy9x6svfkfa7dw0m8zqc0s0mkix"; depends=[keras reticulate tensorflow tfprobability]; }; MLCIRTwithin = derive2 { name="MLCIRTwithin"; version="2.1.1"; sha256="1x0xmka7kkbjnh3yv4zxxyl17cpmf0rb9hxmdl1srb6ijld4np1b"; depends=[limSolve MASS MultiLCIRT]; }; @@ -2881,7 +2913,7 @@ in with self; { MQMF = derive2 { name="MQMF"; version="0.1.1"; sha256="0cbcmrgd3jvr2b95awklzsr694dqxgc5kk840r293qvhpsbxf27y"; depends=[MASS mvtnorm]; }; MRCE = derive2 { name="MRCE"; version="2.4"; sha256="0j5dhzmn1bpplc5jird966gcg0zjwlajv93r2p0kh48msi5kbaqc"; depends=[glasso]; }; MRFA = derive2 { name="MRFA"; version="0.4"; sha256="1ivzyp3q2nb6h5mhykina75ak7ajfw62rh23yr4pljma7gmr1hhm"; depends=[fields foreach glmnet grplasso plyr randtoolbox]; }; - MRFcov = derive2 { name="MRFcov"; version="1.0.38"; sha256="1ajpnxx49zpmph21x0q4x9w4fjpi43s8sqm294i0l883khyx6ljg"; depends=[caret dplyr ggplot2 glmnet gridExtra igraph magrittr MASS Matrix mgcv pbapply plyr purrr reshape2 sfsmisc]; }; + MRFcov = derive2 { name="MRFcov"; version="1.0.39"; sha256="0vgmm9lwkpfahzlhcyaixh2x9d85rrpxipzsc0wy66j43vgn4jhp"; depends=[caret dplyr ggplot2 glmnet gridExtra igraph magrittr MASS Matrix mgcv pbapply plyr purrr reshape2 sfsmisc]; }; MRHawkes = derive2 { name="MRHawkes"; version="1.0"; sha256="0qhwm708jijv1w6iml18bg7fc2igdcmydwpb9dzpa4gwwads8b78"; depends=[IHSEP]; }; MRMCaov = derive2 { name="MRMCaov"; version="0.3.0"; sha256="0nq4i1ymv3ifp39liz99l51605q2iiin75a02wp9pyaxf6k7b5hd"; depends=[ggplot2 mvtnorm progress tibble trust]; }; MRPC = derive2 { name="MRPC"; version="3.1.0"; sha256="1hsrcqp4yygz2psxj9m2n1z7pivdf82b3rnqc34ripyql5apmikn"; depends=[bnlearn compositions dynamicTreeCut fastcluster GGally graph gtools Hmisc mice network pcalg plyr psych Rgraphviz sna WGCNA]; }; @@ -2892,7 +2924,7 @@ in with self; { MRTSampleSize = derive2 { name="MRTSampleSize"; version="0.3.0"; sha256="03c6jkanff241rcv1yixvmlnya3sd8hqpawf9dx9mpsri4pp6mdk"; depends=[]; }; MRTSampleSizeBinary = derive2 { name="MRTSampleSizeBinary"; version="0.1.1"; sha256="01kg6frglrhi55px2hsadjn9dbfz61hwj1q2m6jrm59b4cws0gcb"; depends=[dplyr ggplot2 Matrix]; }; MRmediation = derive2 { name="MRmediation"; version="1.0.1"; sha256="0v0kn6x4fwj35imj1fb2f2024ifb7081z4cwlhjmdxhabcy6xbx7"; depends=[fda MASS]; }; - MSCMT = derive2 { name="MSCMT"; version="1.3.6"; sha256="0n88k3ad75v2lwvr5lmpmvdzx5mr9slkmn4vxpmaj045mrs8cvd0"; depends=[ggplot2 lpSolve lpSolveAPI Rdpack Rglpk]; }; + MSCMT = derive2 { name="MSCMT"; version="1.3.7"; sha256="1h9g6n7wjh8zx7y1lj7inkn9hz5jbf8q5lhf13m2r9qlw122rlri"; depends=[ggplot2 lpSolve lpSolveAPI Rdpack Rglpk]; }; MSCquartets = derive2 { name="MSCquartets"; version="1.1.2"; sha256="1q85h3jm2llkm8dpqdxgjxzg7iwlmhx41n3hlk1ybvxw2c0jb3rd"; depends=[ape doParallel foreach phangorn Rdpack zipfR]; }; MSCsimtester = derive2 { name="MSCsimtester"; version="1.0.0"; sha256="0k04fdprwa56vm6n372lipybgq1plhmjbxvp58wqmpgzpnhcxkvd"; depends=[ape kSamples Rdpack]; }; MSEtool = derive2 { name="MSEtool"; version="3.6.2"; sha256="0nzsvn3xg7mvbkm8gi2mnjib6dyzff3iwbqk0c30jq4rnbqwpqa1"; depends=[abind dplyr ggplot2 ggrepel gridExtra Rcpp RcppArmadillo snowfall]; }; @@ -2908,7 +2940,7 @@ in with self; { MSTest = derive2 { name="MSTest"; version="0.1.1"; sha256="0icrpzvgbr84scx44lkg0r3f0x6hppqqikcnr0hpsbg6125ihq5f"; depends=[foreach GA GenSA lmf nloptr numDeriv pso Rcpp RcppArmadillo rlang]; }; MSbox = derive2 { name="MSbox"; version="1.4.8"; sha256="1cppzy3kri2zmhyk34scffix28v1bjb0fhk51kb33amg6vz5mnj3"; depends=[crayon stringr xml2]; }; MSclassifR = derive2 { name="MSclassifR"; version="0.3.2"; sha256="0abrz71v5bg7cch9hll6j67kzygrs2bili9fqmmnmm0rdnvsmzf8"; depends=[car caret cp4p dplyr e1071 fuzzyjoin ggplot2 glmnet limma MALDIquant MALDIquantForeign MALDIrppa mclust metap mixOmics mltools nnet performanceEstimation randomForest reshape2 statmod UBL vita VSURF xgboost]; }; - MSclust = derive2 { name="MSclust"; version="1.0.2"; sha256="0i88179z6h2lllkbhp5jfwxnamj1n45v3i3cizzqk217ch3nfjwd"; depends=[cluster GGally ggplot2 gtools Matrix mclust mnormt mvtnorm psych]; }; + MSclust = derive2 { name="MSclust"; version="1.0.3"; sha256="0kb649sg0q7j4my7xx860pxmh6hd1f8h6sxyh49bwv9glvzq4p75"; depends=[cluster GGally ggplot2 gtools Matrix mclust mnormt mvtnorm psych]; }; MScombine = derive2 { name="MScombine"; version="1.4"; sha256="0s3gbf3s5mf00d5mkbqhd9wwnyps7qb4r3zbal8j8nsaspql9nd3"; depends=[plyr]; }; MSiP = derive2 { name="MSiP"; version="1.3.7"; sha256="1n8yl5icd3qkpmx2knxsp4g6jvkbg6hl82jxg9apxkx4nmsvkawz"; depends=[caret dplyr e1071 magrittr mice plyr pROC PRROC ranger tibble tidyr]; }; MSinference = derive2 { name="MSinference"; version="0.0.9"; sha256="0w253s5xj6i7xgi3aj48d4h983gpl4y6ajcgpx524p7nk94ajxzj"; depends=[doParallel foreach Rcpp Rdpack]; }; @@ -2916,6 +2948,7 @@ in with self; { MTA = derive2 { name="MTA"; version="0.4.1"; sha256="1dy24rqyw16bqh83sxi4m6djndr61hrgkyrh8s41qg5aycv0hzn1"; depends=[igraph sf]; }; MTAR = derive2 { name="MTAR"; version="0.1.1"; sha256="17r2da1hdvs8qvgar87zdl51jy8w30vczcsi6jrq0rdyi1lld641"; depends=[CompQuadForm MASS Matrix]; }; MTDrh = derive2 { name="MTDrh"; version="0.1.0"; sha256="0ass3b90nr4i0y7v30hk8xhq3hj9bxaxcsr4f8wfi0lnvzfv6aaa"; depends=[]; }; + MTE = derive2 { name="MTE"; version="1.2"; sha256="0xh9q302gklx0djkjvmp79n7y8d0sc06mm7lvmva5i6s69jq243f"; depends=[glmnet quantreg rqPen]; }; MTLR = derive2 { name="MTLR"; version="0.2.1"; sha256="070121qn7vmxmxgvzv7ymhk19j9kxks4xa7qpd8vkc2rp3ara4cp"; depends=[Rcpp RcppArmadillo survival]; }; MTPS = derive2 { name="MTPS"; version="1.0.1"; sha256="1jdlw943ywmrp64w1qrjqymqjh2jahnq0i5px8af1l3msznj20x4"; depends=[class e1071 glmnet MASS rpart]; }; MTS = derive2 { name="MTS"; version="1.2.1"; sha256="0nc1g5dbg42j0h5xg9psg5kqldp5w87in8ggzliixpsz3cilvry3"; depends=[fBasics fGarch mvtnorm Rcpp RcppEigen]; }; @@ -2927,6 +2960,7 @@ in with self; { MVN = derive2 { name="MVN"; version="5.9"; sha256="014s07nxq014j5hkbd6iwwqykcw8si5sah57gi3n0wb51sv8ip1k"; depends=[boot car energy MASS moments nortest plyr psych]; }; MVNBayesian = derive2 { name="MVNBayesian"; version="0.0.8-11"; sha256="1iaxyp480v91887cn4w3l74907wvbzs3ay4cjgzd8xk2dp47w8bg"; depends=[mvtnorm plyr]; }; MVNtestchar = derive2 { name="MVNtestchar"; version="1.1.3"; sha256="0w5008zknrl5r7l4dmj2fbm7vvg2f1wynzf38kabns4j7hb1nmxw"; depends=[ggplot2 Hmisc knitr]; }; + MVPBT = derive2 { name="MVPBT"; version="1.1-1"; sha256="15swmaabfrqah97qz1z971h43vi2c1klniqhc21k7by7bqwsf9sy"; depends=[mada MASS metafor mvmeta]; }; MVQuickGraphs = derive2 { name="MVQuickGraphs"; version="0.1.2"; sha256="1937w8y866bsn9kn6a98c91akhm9ddc5dr9wqm51lkbjyz1zm0j1"; depends=[plotrix]; }; MVR = derive2 { name="MVR"; version="1.33.0"; sha256="1ygz47a2p5r5axql5zsxvsn25pcqyxz6mpw50zfmzrcqdrfa3bg8"; depends=[statmod]; }; MVT = derive2 { name="MVT"; version="0.3-8"; sha256="0j3xjxrjy72dcdphlwdzfpnmxx0vs3f0jnk3w4vkp7rx01c1wbd3"; depends=[fastmatrix]; }; @@ -2942,7 +2976,7 @@ in with self; { MachineShop = derive2 { name="MachineShop"; version="3.6.2"; sha256="08gl9pgp9a7ljf70babdkw2l5byd6j9284qzd2098yr6zbyns1bz"; depends=[abind cli dials foreach ggplot2 kernlab magrittr Matrix nnet party polspline progress recipes rlang rsample Rsolnp survival tibble]; }; MacroZooBenthosWaterA = derive2 { name="MacroZooBenthosWaterA"; version="0.1.0"; sha256="15b90g7nw82dmpfarx5qm159jmrpp915qz26vv3ya6ky4g2kl6ic"; depends=[]; }; Maeswrap = derive2 { name="Maeswrap"; version="1.7"; sha256="0cnnr5zq7ax1j7dx7ira7iccqppc6qpdjghjarvdb2zj0lf69yyb"; depends=[geometry lattice rgl stringr]; }; - MagmaClustR = derive2 { name="MagmaClustR"; version="1.1.1"; sha256="0q8k1daagkzscnvigj8642nrp9d2f1kp0hav6zn9c625rjvsr2b1"; depends=[broom dplyr ggplot2 magrittr mvtnorm plyr purrr Rcpp rlang tibble tidyr tidyselect]; }; + MagmaClustR = derive2 { name="MagmaClustR"; version="1.1.2"; sha256="0nmf3whngm1kz27aazq4pkgw76sw24w33n51ril0dsvsfirfk7dd"; depends=[broom dplyr ggplot2 magrittr mvtnorm plyr purrr Rcpp rlang tibble tidyr tidyselect]; }; MainExistingDatasets = derive2 { name="MainExistingDatasets"; version="1.0.2"; sha256="16g741hzckla6amhwa54bhg3l3700sp43p6mijbb5065qnviw5y9"; depends=[config dplyr DT glue golem htmltools htmlwidgets magrittr openxlsx pkgload processx rlang sf shiny spData tidyr tmap tmaptools]; }; MajKMeans = derive2 { name="MajKMeans"; version="0.1.0"; sha256="1zphrxyx3jd6rnh1y1qnc6bip34kfqk1a5ms4ps39gfngznh482m"; depends=[MASS]; }; MakeYourPalette = derive2 { name="MakeYourPalette"; version="0.1.3"; sha256="0snawchc2rkxglmcg093gik3gwasn4pxqsvz6rm2r1gkbwbazmh4"; depends=[prismatic raster rgdal]; }; @@ -2951,11 +2985,13 @@ in with self; { MandalaR = derive2 { name="MandalaR"; version="0.1.0"; sha256="13shj6r416cz11qlwrha468gx1y76vx28xyhap3k0c0b2jxn699b"; depends=[ggplot2]; }; Mangrove = derive2 { name="Mangrove"; version="1.21"; sha256="1qf3fjzf0sb6fqbfdbxwbw6wah3gg2qran4mgg13hcmk4n3j0hxp"; depends=[]; }; ManifoldOptim = derive2 { name="ManifoldOptim"; version="1.0.1"; sha256="0vp064ayniwqc8wck9n5y7s5y22x2jq55n8l5q4vjb8q7idvy6xd"; depends=[Rcpp RcppArmadillo]; }; + ManlyMix = derive2 { name="ManlyMix"; version="0.1.15"; sha256="10knb2gzzsq5dkm7h70qvcw2cx7m7ra00vlkqbs36y6vw2gcjwmn"; depends=[]; }; MantaID = derive2 { name="MantaID"; version="1.0.2"; sha256="01rc9p4ydq7s2iwqc017ijdbw8w8n0s82f0j69gsl6m5fbqm9a4k"; depends=[biomaRt caret data_table dplyr ggcorrplot ggplot2 keras magrittr mlr3 mlr3tuning paradox purrr RColorBrewer reshape2 scutr stringr tibble tidyr tidyselect]; }; ManyTests = derive2 { name="ManyTests"; version="1.2"; sha256="1mi7wvnkcd95126f1h8vl8skn397yd2zqvcswprqar54p161wgyi"; depends=[]; }; Map2NCBI = derive2 { name="Map2NCBI"; version="1.4"; sha256="1ssqnm9g5p0nnhdyp9dqbbsz3hw8jzdwy0rv3csp8fxm0f1bi1kb"; depends=[rentrez]; }; MapGAM = derive2 { name="MapGAM"; version="1.2-6"; sha256="0rxrqi9ngjkqfxj4dcyxjjchjzl98695isabc422p4436xfwwvkm"; depends=[colorspace gam maptools sp survival]; }; MapeBay = derive2 { name="MapeBay"; version="0.1.0"; sha256="1w1lpnm8fd5gmv4ggrlmkaaj45wyx3yclx3fb2mdrp7iyg4rx34c"; depends=[BH broom car dplyr DT heplots highcharter htmltools MANOVA_RM moments MultBiplotR MVN mvnormtest nortest purrr Rcpp RcppEigen RcppParallel reshape rstan rstantools shiny shinycssloaders shinydashboard shinydashboardPlus StanHeaders stringr tibble vegan waiter]; }; + Mapinguari = derive2 { name="Mapinguari"; version="2.0.0"; sha256="0q3xvasllrj6l25knyg0izpirn3fc9rc066xhkrhcxa8h98j87wn"; depends=[dplyr magrittr raster rgdal rlang stringr testthat]; }; MareyMap = derive2 { name="MareyMap"; version="1.3.6"; sha256="0zbg72vck9p14zk1924407n5ap84qiisqhbq1vr715sw67fwdcxi"; depends=[]; }; MargCond = derive2 { name="MargCond"; version="1.0.0"; sha256="07qh1lgy8ds11cwlb4rxkl6aiph91zq29sy27b8wwxalycdgjrg8"; depends=[gee lme4 MASS Matrix]; }; MarginalMediation = derive2 { name="MarginalMediation"; version="0.7.2"; sha256="0a19ww8i04z8a4a6hia4myssfam57fdx59mc4n9dzrbyy293ckx2"; depends=[boot cli crayon furniture magrittr purrr rstudioapi stringr tibble]; }; @@ -2965,11 +3001,12 @@ in with self; { MassWateR = derive2 { name="MassWateR"; version="2.0.2"; sha256="15zn8rrivl8nbr4s8zfzw8is9x8pvwrvx64x8nxmh2m9499a5wrm"; depends=[curl dplyr flextable ggmap ggplot2 ggrepel ggspatial httr lubridate RColorBrewer readxl rmarkdown sf tibble tidyr units writexl]; }; Massign = derive2 { name="Massign"; version="1.1.0"; sha256="09i32lsrx40rxrnb9alfipfrkipy4mza5nr4gcpn2a5h86ak9290"; depends=[]; }; MatSkew = derive2 { name="MatSkew"; version="0.1.5"; sha256="019v2b1r0bvw84xs50smjb3jdz7gd2adz5d84xd8zq43lnml96d1"; depends=[]; }; - MatchIt = derive2 { name="MatchIt"; version="4.5.2"; sha256="02pk5p5ic9bkz968qb8ayavlj4vs0hrlpqz68w0mfvn6rf230vpg"; depends=[backports Rcpp RcppProgress]; }; + MatTransMix = derive2 { name="MatTransMix"; version="0.1.16"; sha256="1jvxwbs2914hqd5vr9kfwazh9d0vqpw7dhbpjdh3q4rgqk80gwpd"; depends=[mvtnorm]; }; + MatchIt = derive2 { name="MatchIt"; version="4.5.3"; sha256="06naf514c6vifqqdj3hsk822vib4qzv4cw7pnsrbcq43pja5hqim"; depends=[backports chk Rcpp RcppProgress rlang]; }; MatchLinReg = derive2 { name="MatchLinReg"; version="0.8.1"; sha256="1spkjpm4pviqv52nknhww1vcjc61sgsfsvp0ilpp4srh0ykc8ihh"; depends=[Hmisc Matching]; }; MatchThem = derive2 { name="MatchThem"; version="1.0.1"; sha256="1g3vzbxrbmgmxlnn6i2i1wdk949i547ywgxcw05na71kc1nvwvfd"; depends=[MatchIt mice rlang survey WeightIt]; }; Matching = derive2 { name="Matching"; version="4.10-8"; sha256="16m4mmlvyslnn77idragbjf2ygmd7r6kwrgwkwcfnphzvlnjwhal"; depends=[MASS]; }; - Matrix = derive2 { name="Matrix"; version="1.5-4"; sha256="01kgnsx3m19varjfn7n0g48ml6yrwr3bnjhhd0h486ynjccvdkhm"; depends=[lattice]; }; + Matrix = derive2 { name="Matrix"; version="1.5-4.1"; sha256="0bh87f6yll06q0068wavwmagvsc0p95g7071zsjr2yzb2dr5i2b5"; depends=[lattice]; }; MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.10.0"; sha256="1na3y1crlj57c1xq9ja3v94cx2dr0myrlx9bxvhhwss3q3r1lgby"; depends=[plotrix pracma progress Rcpp RcppArmadillo RSpectra]; }; MatrixEQTL = derive2 { name="MatrixEQTL"; version="2.3"; sha256="10r6h5bidj44kfbwiml9pkysbikqphfb21ig61qnx0qa12xcl6l8"; depends=[]; }; MatrixExtra = derive2 { name="MatrixExtra"; version="0.1.13"; sha256="1s8y8zp9k7rsnyi1d8ghi4brjbbdwxijc9chhla24qm3fi6np33a"; depends=[float Matrix Rcpp RhpcBLASctl]; }; @@ -2980,17 +3017,17 @@ in with self; { MaxPro = derive2 { name="MaxPro"; version="4.1-2"; sha256="19a2wp93kx1wkbzd5bvljbm1rr96gr14w4fb0ppbgr2y2a4g8i1v"; depends=[nloptr]; }; MaxSkew = derive2 { name="MaxSkew"; version="1.1"; sha256="0x5x0jpvhp189jnmgh6d1h3ya0dicj5qfcrgr2fhp1v8jjhl125m"; depends=[]; }; MaxentVariableSelection = derive2 { name="MaxentVariableSelection"; version="1.0-3"; sha256="1cmxfdkm5k85b4ivlfy5521hkfj0gq2pb1qlxxklh0fprw87kp9c"; depends=[ggplot2 raster]; }; + MaximinInfer = derive2 { name="MaximinInfer"; version="2.0.0"; sha256="0l4sglb3f7f1na6dbb4rd73sb4kqzlz78sj09f84rbqghjrzbxl0"; depends=[CVXR glmnet intervals MASS SIHR]; }; MazamaCoreUtils = derive2 { name="MazamaCoreUtils"; version="0.4.13"; sha256="1jd3lnd5zdfipg5l8f7y52vy1pa9mfkjnspk50z881557k6pwmnf"; depends=[devtools digest dplyr futile_logger lubridate magrittr purrr rlang rvest stringr tibble xml2]; }; MazamaLocationUtils = derive2 { name="MazamaLocationUtils"; version="0.3.8"; sha256="1vjbbbdq3nlgp7fdzrsb568v37s3iszcm6c93yz2ckgqxy7m4sli"; depends=[dplyr geodist httr jsonlite leaflet lubridate magrittr MazamaCoreUtils MazamaSpatialUtils readr rlang stringr tidygeocoder]; }; MazamaRollUtils = derive2 { name="MazamaRollUtils"; version="0.1.3"; sha256="1433xy64n3wpxg9d0jlwdfp8hlvmq0ndg3fv6kfxq3pasm600jgc"; depends=[Rcpp]; }; MazamaSpatialPlots = derive2 { name="MazamaSpatialPlots"; version="0.2.0"; sha256="1i8gqywl2w7zjl1m5qw8vmy7wn44cp8fkiw4m2iwvf4s9q43xjnc"; depends=[dplyr magrittr MazamaCoreUtils MazamaSpatialUtils rlang sf tmap]; }; - MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.8.1"; sha256="1pw4hgd4bjzm0vbkry6ajndlb337x257amr5zwxr8zaal4j0zrgq"; depends=[countrycode dplyr magrittr MazamaCoreUtils rlang rmapshaper sf stringr]; }; - MazamaTimeSeries = derive2 { name="MazamaTimeSeries"; version="0.2.10"; sha256="1x3nc57wzw3gsjpjbhdmjyaac8rhv4cbyyvbpbc48m6b42qbl9cz"; depends=[dplyr geodist lubridate magrittr MazamaCoreUtils MazamaRollUtils rlang stringr]; }; + MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.8.5"; sha256="1pg9caf13jscqc56lz5bsayy68mzi603nv8b927kijsls4sp54i9"; depends=[countrycode dplyr magrittr MazamaCoreUtils rlang rmapshaper sf stringr]; }; + MazamaTimeSeries = derive2 { name="MazamaTimeSeries"; version="0.2.12"; sha256="02f1b49ldj8xni48f0fd3ii2gjbylz8f3b3jsjqwr8mim45fk8xq"; depends=[dplyr geodist lubridate magrittr MazamaCoreUtils MazamaRollUtils rlang stringr]; }; Mcomp = derive2 { name="Mcomp"; version="2.8"; sha256="1wz5fr3dhxn4s0qvxm2mzq9dbz3x0vgh6pixjrgk9d4i9w2p7s60"; depends=[forecast ggplot2]; }; MeTo = derive2 { name="MeTo"; version="0.1.1"; sha256="0zn63qljsw3bnxpj823lrkcl3rnxksjsaxzn6dbddw41j80mmfa4"; depends=[lubridate]; }; MedDietCalc = derive2 { name="MedDietCalc"; version="0.1.1"; sha256="11q1yn6l697qa33wqik9y9lji39r6pph109yxkkprg9p80c187xy"; depends=[]; }; MedLEA = derive2 { name="MedLEA"; version="1.0.2"; sha256="1jnrav6hhb97v5ncrspkq7ph2xqzc7sn14awlsnmbfzpv3543m4y"; depends=[]; }; - MedSurvey = derive2 { name="MedSurvey"; version="1.1.1.3.0"; sha256="11lkli2arl5w2aizzd93fb6xsy30000nf3qc08qirrm07rwypaly"; depends=[lavaan Matrix survey]; }; MediaK = derive2 { name="MediaK"; version="1.0"; sha256="19cmxl2wksw9kvjsfn1m4nkr5gpcx6bk0sqrabj1n0dla1l32v2a"; depends=[Rcpp RcppEigen]; }; Mediana = derive2 { name="Mediana"; version="1.0.8"; sha256="0j1ikc2iaxl70134v0gijj2i2g0xgjafvn8rc108r9fhm8rpw564"; depends=[doParallel doRNG foreach MASS mvtnorm survival]; }; MedianaDesigner = derive2 { name="MedianaDesigner"; version="0.12"; sha256="028s66n7908fccpjc500sim50w1xayvqb9cg2jrzqj42mmmfbnj4"; depends=[devEMF doParallel flextable foreach lme4 lmerTest MASS mvtnorm officer pbkrtest Rcpp RcppEigen RcppNumerical rootSolve shiny shinydashboard shinyMatrix]; }; @@ -3025,13 +3062,13 @@ in with self; { MethComp = derive2 { name="MethComp"; version="1.30.0"; sha256="1vmwb4zw4gm2x0j2nzm2vjfj7x19ws8njr6dcglzjpbbha7nxjp6"; depends=[coda nlme rjags]; }; MethodCompare = derive2 { name="MethodCompare"; version="0.1.2"; sha256="1nxr2fgmfixjkdparavi156qqqchjwaxpjk9i2xgc1yhp1p01pll"; depends=[nlme]; }; Metrics = derive2 { name="Metrics"; version="0.1.4"; sha256="0fh8qbjlwzagh272lgwr4bxcqcjb1qpz53mgs8rzlvncax6nk5bk"; depends=[]; }; - MetricsWeighted = derive2 { name="MetricsWeighted"; version="0.5.5"; sha256="09f6gq9fw5yw7pcm4ywchsimwpgf2h8n52r75vjqhin57xm8ppfq"; depends=[]; }; + MetricsWeighted = derive2 { name="MetricsWeighted"; version="1.0.1"; sha256="0y6hn7ai43iaqqiq16x9g4l0i8mp9y2vn4p4x7hzlm4q5gllag9q"; depends=[]; }; MexBrewer = derive2 { name="MexBrewer"; version="0.0.2"; sha256="04r1hylym4pxlxy7ldd185bczd398f8a757a9yy6f86lg4vrqyhq"; depends=[ggplot2]; }; MfUSampler = derive2 { name="MfUSampler"; version="1.1.0"; sha256="0jzql2hs335gd4kwj18yi8ygsi3190wacfs3mgrmshdjb2frkh15"; depends=[ars coda dlm]; }; MiDA = derive2 { name="MiDA"; version="0.1.2"; sha256="144gxsxqljzskxsw5k0y69ix0pxlfvyyznxkjpf2ng4l47pg11z5"; depends=[caret gbm genefilter limma preprocessCore pROC SQN]; }; MiMIR = derive2 { name="MiMIR"; version="1.4"; sha256="0gy4mp4dc25jzks62rw1w3xwrr4zs4q4cix2mlcmhh807km0g3xf"; depends=[caret dplyr DT foreach fs ggplot2 heatmaply matrixStats plotly pROC purrr shiny shinycssloaders shinydashboard shinyFiles shinyjs shinyWidgets survival survminer]; }; MiRKAT = derive2 { name="MiRKAT"; version="1.2.3"; sha256="0y9j2dmw69a1n63mnbz8qg4pk69dzzhg42l3cq9i0s0yg8pp4pj6"; depends=[CompQuadForm GUniFrac lme4 MASS Matrix mixtools PearsonDS permute quantreg survival]; }; - MiRNAQCD = derive2 { name="MiRNAQCD"; version="1.1.2"; sha256="1alpa7xsk669rsh0s7kjdnk1ymlfm81rw011pk29fi7p2jc505iv"; depends=[ggplot2 pROC]; }; + MiRNAQCD = derive2 { name="MiRNAQCD"; version="1.1.3"; sha256="0512zv75adic1mw5ccs076b9yczmqrx514jibbbid33m5bv877hm"; depends=[ggplot2 pROC qpdf]; }; MiRSEA = derive2 { name="MiRSEA"; version="1.1"; sha256="0jpl6ws5yx1qjzdnip9a37nmvx81az4cbsjm57x613qjpwmg6by3"; depends=[]; }; MiSPU = derive2 { name="MiSPU"; version="1.0"; sha256="1l6q0fm5z5i6gigr940h8kc5rka08psmhcprp8grmsxk3qy2kply"; depends=[ape aSPU cluster Rcpp RcppArmadillo vegan]; }; MicSim = derive2 { name="MicSim"; version="2.0.0"; sha256="1pkwhp81gi0pzs1sypk7ckhd79gz977n2ly9lwlsm5l3xs72v5cy"; depends=[rlecuyer snowfall]; }; @@ -3047,6 +3084,7 @@ in with self; { Minirand = derive2 { name="Minirand"; version="0.1.3"; sha256="19lib0qh3xfzvpgsskl3yypmjygss0w7pimz0136av0px5b4jran"; depends=[]; }; MinkowskiSum = derive2 { name="MinkowskiSum"; version="1.0.0"; sha256="1v7i3jzj65y8xy8kyl4jp651pqk5xd9bbfj8az1443ng9l39n57h"; depends=[BH data_table gmp PolygonSoup Rcpp RcppCGAL RcppEigen]; }; MisRepARMA = derive2 { name="MisRepARMA"; version="0.0.2"; sha256="0bay8grq49yin9yy9h9ynb8flsbrb10h4lp7sdzp9ih5b9w21y7z"; depends=[boot mixtools tseries]; }; + MissingHandle = derive2 { name="MissingHandle"; version="0.1.1"; sha256="09mfjyygxmcpd50148a5pcda0c7gvfrxgxbw1v6i01ymwpfb4b2p"; depends=[dplyr imputeTS zoo]; }; MissingPlotLSD = derive2 { name="MissingPlotLSD"; version="0.1.0"; sha256="07y9ri6k3g850jd6hmqm3q82791sl9sbw1xmz5bhi7wrfgvyhji0"; depends=[]; }; MissingPlotRBD = derive2 { name="MissingPlotRBD"; version="1.1.0"; sha256="1w7i9zcdw7k0hb89lm7022pq5623lkxwa8j0jw2imvikhmj2mf79"; depends=[]; }; Missplot = derive2 { name="Missplot"; version="0.1.0"; sha256="00qpmkmfv3k13faxb2wqcdcmd5q5abdhjwr8rrf9b0bv6qqnlm84"; depends=[]; }; @@ -3059,15 +3097,17 @@ in with self; { MixRF = derive2 { name="MixRF"; version="1.0"; sha256="1av1wx7wmfc3z8a4bc6g3i3b807nc28n3s2rs3yh0rcwq1pfl0ir"; depends=[doParallel foreach lme4 randomForest]; }; MixSAL = derive2 { name="MixSAL"; version="1.0"; sha256="15dymyzfs3bwskaf6xndj291g6nhw7k1q93y1cba55a6fdjh5qz9"; depends=[MASS]; }; MixSIAR = derive2 { name="MixSIAR"; version="3.1.12"; sha256="07wiv7x2c9mhqk37zndxvdb76m9shizc48qz2bp2f4g5z9hciid7"; depends=[bayesplot coda ggmcmc ggplot2 lattice loo MASS MCMCpack R2jags RColorBrewer reshape reshape2 splancs]; }; + MixSemiRob = derive2 { name="MixSemiRob"; version="1.0.0"; sha256="07dj2j1cxyzr8dpxwzh2mqnsyz1l4zw4z51yfvsv4zy7x2k25164"; depends=[GoFKernel MASS mixtools mvtnorm pracma quadprog Rlab robustbase ucminf]; }; MixSim = derive2 { name="MixSim"; version="1.1-6"; sha256="003nc8i57dh1i7h6sfj51053wi7qd04cmdxyr7lm99qcfc577drf"; depends=[MASS]; }; MixTwice = derive2 { name="MixTwice"; version="2.0"; sha256="11j591z1pnql84sfczvry7mg4hs0jghgp170y5j5wwhs7l5kc7r7"; depends=[alabama ashr fdrtool Iso]; }; MixedIndTests = derive2 { name="MixedIndTests"; version="1.1.0"; sha256="0fh4hh8481wcjkcfvy0r84m3s0kkpx1psg4vc2gdx089724hzjk0"; depends=[copula doParallel foreach ggplot2 survey]; }; + MixedLevelRSDs = derive2 { name="MixedLevelRSDs"; version="1.0.0"; sha256="1k2angaggzhiwp7idjdl41ws4j5kp15az74p4ajy6ia878bj0sf4"; depends=[]; }; MixedPoisson = derive2 { name="MixedPoisson"; version="2.0"; sha256="0g5mpzj0wda6g46q3cg5mm3x4dvpz9gdclzn2m17l62lzny2i10p"; depends=[gaussquad MASS Rmpfr]; }; MixedPsy = derive2 { name="MixedPsy"; version="1.1.0"; sha256="1iz3cl19xlznzbqxvichbjhyhams4v9611p9094r6q5fpmf71p88"; depends=[beepr boot brglm ggplot2 lme4 Matrix mnormt]; }; MixedTS = derive2 { name="MixedTS"; version="1.0.4"; sha256="0gwcg115idbcm5llgzqsygvqgshq8dywawxkaddsmw4sbbhj4555"; depends=[MASS]; }; MixfMRI = derive2 { name="MixfMRI"; version="0.1-2"; sha256="1ngqn2chjii94f7413ydbzmws083mp0hc5ys3lwi2mgqqmpi3pah"; depends=[EMCluster fftw MASS Matrix MixSim RColorBrewer]; }; MixtureInf = derive2 { name="MixtureInf"; version="1.1"; sha256="12qcflmrpzh4w5b40xq5qicks6p0cwqpf5k84pwabkjb168afddv"; depends=[quadprog]; }; - MixtureMissing = derive2 { name="MixtureMissing"; version="1.0.2"; sha256="03ql591891jvhycagkjl5gj83mjlrv5m95kpgkgph8gim71q2di1"; depends=[cluster ContaminatedMixt MASS mnormt mvtnorm rootSolve]; }; + MixtureMissing = derive2 { name="MixtureMissing"; version="2.0.0"; sha256="0c01i64n53q15n97j7rfayj9h0wj4r64fvs50fid38kkk16wii2i"; depends=[Bessel cluster MASS mnormt mvtnorm numDeriv]; }; MixtureRegLTIC = derive2 { name="MixtureRegLTIC"; version="1.0.0"; sha256="052gyk4gqv49fa2rxbxnib29f1vjxiw4q8llkfhsv8kw5pw38699"; depends=[]; }; MixviR = derive2 { name="MixviR"; version="3.5.0"; sha256="0npwwpb96id4zkrp4qzpiv5sgw6y4aqhhwx7v8vbg54029p6jj6w"; depends=[Biostrings dplyr DT ggplot2 glue httr lubridate magrittr plotly readr shiny stringr tidyr vcfR]; }; Mmcsd = derive2 { name="Mmcsd"; version="1.0.0"; sha256="1vj9qissby967a4z21772vj49hxhjppsn4w6l6s998pll8500np5"; depends=[dplyr knitr magrittr purrr rlist tibble tidyr]; }; @@ -3081,7 +3121,7 @@ in with self; { ModStatR = derive2 { name="ModStatR"; version="1.3.3"; sha256="0rind0v0s9n1z9852hr2cc36c2jpkasrhkprqqvz1qvfjkhg4c6v"; depends=[boot ellipse gsl hypergeo jmuOutlier]; }; ModTools = derive2 { name="ModTools"; version="0.9.4"; sha256="111rhdw917rynwsh6l6nsma5pjyi3ix9gjy5fx620d6ywcq7b227"; depends=[AER C50 car class DescTools e1071 lattice lmtest MASS naivebayes NeuralNetTools nnet pROC pscl randomForest relaimpo robustbase rpart rpart_plot sandwich survival]; }; Modalclust = derive2 { name="Modalclust"; version="0.7"; sha256="0ymzdxp6rh6baih1xm6kj8l8jxjclvnmq0gfp38cl8lpskspb26x"; depends=[class mvtnorm zoo]; }; - ModelMap = derive2 { name="ModelMap"; version="3.4.0.3"; sha256="182rs708aqbi59njndp1ibh9dlx8x83ip7grnwy70qm9fykyf9wy"; depends=[corrplot fields HandTill2001 mgcv PresenceAbsence randomForest raster rgdal]; }; + ModelMap = derive2 { name="ModelMap"; version="3.4.0.4"; sha256="022isqdfvrfblmw5lh0wqmyknzm11sdg011brdkwv3rc8xym3gaa"; depends=[corrplot fields HandTill2001 mgcv PresenceAbsence randomForest raster]; }; ModelMatrixModel = derive2 { name="ModelMatrixModel"; version="0.1.0"; sha256="0w8j32b2yw7x8lr1a9bgs4ylxfsxw8m06q7xpgsiz6sjicspc714"; depends=[Matrix]; }; ModelMetrics = derive2 { name="ModelMetrics"; version="1.2.2.2"; sha256="0mrlsw4c5y1vdsqynxr2dcvmhh5h37pnd71jw5a5djpbda9g21jy"; depends=[data_table Rcpp]; }; Modelcharts = derive2 { name="Modelcharts"; version="0.1.0"; sha256="1jy78kyyh4r13px2d5bm7fra5bkcpimzfji0hmydspkfi3qla37x"; depends=[dplyr plotly]; }; @@ -3095,10 +3135,12 @@ in with self; { MonoInc = derive2 { name="MonoInc"; version="1.1"; sha256="14rykw3bfj0vznz0rw4vsg1k4vanfv9cy867vspw966ncl4bw70h"; depends=[compare doParallel foreach iterators sitar]; }; MonoPhy = derive2 { name="MonoPhy"; version="1.3"; sha256="184nvwmxi28awq8fj1q0mliilbd4kaag673jydr47q1acql0dnmb"; depends=[ape phangorn phytools RColorBrewer taxize]; }; MonoPoly = derive2 { name="MonoPoly"; version="0.3-10"; sha256="0ls3sjfkinp9c5002ww0xm4l2galf20w2f45nm5irkk9sbqas0jq"; depends=[quadprog]; }; + Monte_Carlo_se = derive2 { name="Monte.Carlo.se"; version="0.1.1"; sha256="1bkmah8s8hm3yxs8gz1ssr15s4l9s37675g7agx3g7f9a72v9zbs"; depends=[]; }; MonteCarlo = derive2 { name="MonteCarlo"; version="1.0.6"; sha256="1jwq3by8zfy6sbzahcj5l0vicqn7yyqpb7xhfsaymfspm7xyq6pj"; depends=[abind codetools reshape rlecuyer snow snowfall]; }; - MonteCarloSEM = derive2 { name="MonteCarloSEM"; version="0.0.5"; sha256="1yqqvbj53111wlmi9c8xg7yylgasl97mn5bx0w5zkmnx0xvq004i"; depends=[lavaan Matrix]; }; + MonteCarloSEM = derive2 { name="MonteCarloSEM"; version="0.0.6"; sha256="0mnva4hd02a6f4fpll6ra4nn0chlx8wjixp1jx40krg3xnikqkj1"; depends=[lavaan Matrix]; }; Morpho = derive2 { name="Morpho"; version="2.11"; sha256="1c69n9284chygd375gkir4nk5bjglamhfyk2lz4z3kzy3z25qw50"; depends=[bezier colorRamps doParallel foreach jsonlite MASS Matrix Rcpp RcppArmadillo rgl Rvcg sf]; }; MorphoTools2 = derive2 { name="MorphoTools2"; version="1.0.1.1"; sha256="08n9l905pfls50p278sypf8xxq6bs56f5a5b5wlxwy11flccpyia"; depends=[ade4 candisc car class ellipse heplots MASS plot3D StatMatch vegan]; }; + Morphoscape = derive2 { name="Morphoscape"; version="1.0.2"; sha256="1f4cj5086r1849dwmha8drf7jq56p7bp0fj2liqksppy7gxmdrs4"; depends=[alphahull automap concaveman ggplot2 scales sp spatial viridisLite]; }; MortCast = derive2 { name="MortCast"; version="2.7-0"; sha256="1hw20wb0sl8q09vv68hid90ma2ml866kglsjf38kqky1whmihfbc"; depends=[wpp2017]; }; MortalityGaps = derive2 { name="MortalityGaps"; version="1.0.0"; sha256="0nfm8xa7gnshrl8hsvmvr3za8nbppp7f7i5h4ni204w7xwvh8jxc"; depends=[crch forecast MASS pbapply]; }; MortalityTables = derive2 { name="MortalityTables"; version="2.0.3"; sha256="0ldj8gq5xpbxkjcvdysrcq7a0xv7caz1rc8v6bpn5hkr866lqnmw"; depends=[ggplot2 pracma scales]; }; @@ -3122,6 +3164,7 @@ in with self; { MultiFit = derive2 { name="MultiFit"; version="1.1.1"; sha256="086bnqp61mfanrhi7dqaq5j2ddg3rfiyms0f5wj34svcjal9wjvc"; depends=[data_table Rcpp RcppArmadillo]; }; MultiGlarmaVarSel = derive2 { name="MultiGlarmaVarSel"; version="1.0"; sha256="1cpxy716ca7xa6y7sjrrssx6r4wc1fr2p0i5im5s745xlc66qi06"; depends=[ggplot2 glmnet Matrix]; }; MultiGroupO = derive2 { name="MultiGroupO"; version="0.1.0"; sha256="18d7wfsfyqzrjicp2grfgh582pr6a1fqx7xbnqaj93x3w30pxscg"; depends=[cowplot expm ggplot2 ggrepel gplots gridExtra mgm mvtnorm plsgenomics qgraph rlist]; }; + MultiGroupSequential = derive2 { name="MultiGroupSequential"; version="1.0.0"; sha256="1ks13nhxkfw3ys59gm7i0n0ab6613d6hxw9wdcc9qf4ga9796kn2"; depends=[hommel mvtnorm OpenMx]; }; MultiJoin = derive2 { name="MultiJoin"; version="0.1.1"; sha256="0cfk6yc5jagj9y8xybw6yg0yph4zah2vzaxv0384ad6r0r3x3nm8"; depends=[]; }; MultiKink = derive2 { name="MultiKink"; version="0.1.0"; sha256="0vi629mjmyrh03g3kx4vl47s52bggdxbq2wrdcf892g7xasbmv2b"; depends=[MASS quantreg]; }; MultiLCIRT = derive2 { name="MultiLCIRT"; version="2.11"; sha256="1qls0qp5fz377h50lvpzq3vkw49i3nvizli98gss50nqci8ssqm4"; depends=[limSolve MASS]; }; @@ -3141,7 +3184,7 @@ in with self; { MultipleBubbles = derive2 { name="MultipleBubbles"; version="0.2.0"; sha256="047a1pql3jf500gwlap6ws5z7mx0sqmdq6jbql24nl5iypi9jqpf"; depends=[foreach MASS]; }; MultipleRegression = derive2 { name="MultipleRegression"; version="0.1.0"; sha256="1l9rn6zc60ih7lyydrsy1ih94ksim14yd7kiapiga58mr7abi45h"; depends=[crayon]; }; MultiplierDEA = derive2 { name="MultiplierDEA"; version="0.1.19"; sha256="0ns74496grklacpij2cvbv116kc77wa8kv3jdy9fjzxk8yd6kv4d"; depends=[dplyr lpSolveAPI ompr ompr_roi ROI ROI_plugin_glpk]; }; - MultiscaleDTM = derive2 { name="MultiscaleDTM"; version="0.6.0"; sha256="1dcbdn2v7dd0mpvid0xrh0csmaljn2n4v4pv5r9fvwy8786bz6gg"; depends=[dplyr raster Rcpp RcppArmadillo rgl shiny terra]; }; + MultiscaleDTM = derive2 { name="MultiscaleDTM"; version="0.8"; sha256="12rsfmh2kq7lv205rin1lyzvrwd8r5jf2kw69as693rk04v1swil"; depends=[dplyr raster Rcpp RcppArmadillo rgl shiny terra]; }; MultisiteMediation = derive2 { name="MultisiteMediation"; version="0.0.4"; sha256="0kkw6zxw29qmgd9nlgqjlyh99icxzkkqnpzzanxx8pn7m2ww0wkf"; depends=[ggplot2 lme4 MASS psych statmod]; }; MultivariateAnalysis = derive2 { name="MultivariateAnalysis"; version="0.4.4"; sha256="0vpk7iplmb0cyrqal90m1y4ym8wng2b8k9ydh26xaga4r974qd2p"; depends=[ape biotools candisc corrplot crayon PCAmixdata]; }; MultivariateRandomForest = derive2 { name="MultivariateRandomForest"; version="1.1.5"; sha256="0mww4x1hqraiyvmw2f9s6h180kplmj36hb7zfg7xlkmgdf4apk8d"; depends=[bootstrap Rcpp]; }; @@ -3200,7 +3243,7 @@ in with self; { NISTunits = derive2 { name="NISTunits"; version="1.0.1"; sha256="0km9l3k9p35sb1qrhrz4ijjsdihvsp6j7cz5kh46lgf7nn6xdk7a"; depends=[]; }; NLP = derive2 { name="NLP"; version="0.2-1"; sha256="1dpj04fmld2lnhg072ahgjbhmciqqy9h1lrz0wf32mr7mm9s9sh5"; depends=[]; }; NLPclient = derive2 { name="NLPclient"; version="1.0"; sha256="0jhlz9mqziyk5574vl8qjjs4g75x27rlk90wvzm3q9kjrjyvad35"; depends=[curl NLP xml2]; }; - NLPutils = derive2 { name="NLPutils"; version="0.0-5"; sha256="1jxxly85iajzb9qckkkar0przyxv005cyvry0qi5dkzhbyl5k490"; depends=[NLP qdap SnowballC]; }; + NLPutils = derive2 { name="NLPutils"; version="0.0-5.1"; sha256="1ca7cqfjzrhn0idgw8viqlr2w4lkzng64bqk8hvd08qm7bgg5vjl"; depends=[NLP qdap SnowballC]; }; NLRoot = derive2 { name="NLRoot"; version="1.0"; sha256="1x8mcdgqqrhyykr12bv4hl4wbh1zw2qgpnd2yrm68kb92iy95rh4"; depends=[]; }; NMADiagT = derive2 { name="NMADiagT"; version="0.1.2"; sha256="0fskc3ldfdl17gazpfr2hixy79n7db4c1f5yl1jalhwxiabnxjwp"; depends=[coda ggplot2 imguR ks MASS MCMCpack plotrix Rdpack reshape2 rjags]; }; NMAoutlier = derive2 { name="NMAoutlier"; version="0.1.18"; sha256="0h0pxjg6ppz9zv7wcv1dka5g0f9wxk3bnwicfpsv1advcam4vmmn"; depends=[ggplot2 gridExtra MASS meta netmeta reshape2]; }; @@ -3212,10 +3255,9 @@ in with self; { NMTox = derive2 { name="NMTox"; version="0.1.0"; sha256="1slz6bq57l3f2wqd2nhm3b7dag6vg7wy9zi5rpl7ld1yyqfb0wfp"; depends=[dplyr forcats ggplot2 gridExtra Iso tidyr]; }; NMVANOVA = derive2 { name="NMVANOVA"; version="1.1.0"; sha256="1jlqyg5vn7j8srvifjghd5a7820kadl8kbwib4qxalrfprq81h8p"; depends=[]; }; NMcalc = derive2 { name="NMcalc"; version="0.0.1"; sha256="15jf38yvyiasq6bvnv23znp64njag432f1jb9zayghsny63m3dcl"; depends=[data_table]; }; - NMdata = derive2 { name="NMdata"; version="0.0.16"; sha256="00wswy7agaxc71ms76z3f8nnhr03dsqbh142vjna77b9jhk1p74p"; depends=[data_table]; }; - NMproject = derive2 { name="NMproject"; version="0.6.9"; sha256="0br58m07yf5bxizz3m14rbskhracyg99gq6di9a5rgzycgs3rvg4"; depends=[crayon diffobj dplyr DT dygraphs git2r htmltools lifecycle magrittr miniUI rlang rmarkdown rprojroot rstudioapi shiny stringr tidyr usethis]; }; + NMdata = derive2 { name="NMdata"; version="0.0.17"; sha256="1wg3i7cxmxsdmb062ifxffjjxcs309hcbdgklrm978ihks6h7c1c"; depends=[data_table]; }; NNMIS = derive2 { name="NNMIS"; version="1.0.1"; sha256="1w2i4xlx249p589yqdgbx1ra406ycxw729vbk1lqadbn71m6blaz"; depends=[survival]; }; - NNS = derive2 { name="NNS"; version="0.9.6.1"; sha256="144d08b3vz74b91v3xlj2g92wqdxdgd5w9cwsb6fh14jf0l5kywa"; depends=[caret data_table doParallel meboot quantmod Rcpp RcppParallel Rfast rgl stringr xts zoo]; }; + NNS = derive2 { name="NNS"; version="0.9.9"; sha256="0dxcmlvx9dac2w2fcvp6q1x1fpqipkfg369wrx68x735vybw4q27"; depends=[caret data_table doParallel meboot quantmod Rcpp RcppParallel Rfast rgl stringr xts zoo]; }; NNTbiomarker = derive2 { name="NNTbiomarker"; version="0.29.11"; sha256="0sqlf7vzhpmq2g98c2qlrcqn3ba4ycfxbczgcjiqqhqsvgkpacc1"; depends=[magrittr mvbutils shiny stringr xtable]; }; NNbenchmark = derive2 { name="NNbenchmark"; version="3.2.0"; sha256="086smk3xy6p6ianw41h3gx806q7h28v1dg9d3khsrwyyf9gn8xyp"; depends=[pkgload R6]; }; NO_PING_PONG = derive2 { name="NO.PING.PONG"; version="0.1.6"; sha256="1i8pwk4p43yqmk8irkmvza080sngmng0wv1yr847253a0frjg9mr"; depends=[MASS MCMCglmm metafor]; }; @@ -3237,7 +3279,7 @@ in with self; { NSO1212 = derive2 { name="NSO1212"; version="1.4.0"; sha256="1wxp7rp43gl3xgwln8d1s7b7a5zhz4dlshf9dzgb2ippvjxjqbmc"; depends=[httr jsonlite]; }; NST = derive2 { name="NST"; version="3.1.10"; sha256="1ycpccg7hcg84ygjzksbi0fcrkisvis5165bbnj64h52gjifgxh7"; depends=[ape bigmemory DirichletReg iCAMP permute vegan]; }; NScluster = derive2 { name="NScluster"; version="1.3.6-1"; sha256="0qaf36pf5gd91ivy4ns5gppmrzxcha7ghyih4hcbnxs2291jck0x"; depends=[]; }; - NTSS = derive2 { name="NTSS"; version="0.1.0"; sha256="0sc4pcrspvv685d2gvf2adzvyxnaraiaa45brknc3b3h4v0a4mx2"; depends=[ks spatstat spatstat_explore spatstat_geom spatstat_model spatstat_random]; }; + NTSS = derive2 { name="NTSS"; version="0.1.2"; sha256="1i3y3psr17p8p7s799sdki3pndb82pydl2g3dcz18snynjpmd31j"; depends=[geoR GET ks spatstat spatstat_explore spatstat_geom spatstat_model spatstat_random]; }; NUCOMBog = derive2 { name="NUCOMBog"; version="1.0.4.2"; sha256="0s6gm3adc9qdh94pxzgccbxx1f1lbgqyvd4xk37xp6f3b5hwljdz"; depends=[snowfall]; }; NVCSSL = derive2 { name="NVCSSL"; version="1.0"; sha256="00dpi0b0zm5cfkyb2z8wfkw6xcax2kkplm9rzkvfjz7fchlmkx5r"; depends=[grpreg Matrix plyr]; }; NameNeedle = derive2 { name="NameNeedle"; version="1.2.6"; sha256="0cs65hs6fbkxv8pc2m4394c68nqbahjcryjnhhrhg50wam3y03lq"; depends=[]; }; @@ -3310,18 +3352,19 @@ in with self; { OBMbpkg = derive2 { name="OBMbpkg"; version="1.0.0"; sha256="01wch8wwij3fd0jambk0hpkhlnp4ryrq8qnnr2w1iad9zssjyii5"; depends=[]; }; OBsMD = derive2 { name="OBsMD"; version="6.1"; sha256="0jvvcx2lc39rdnlbhykam6cf94lbci9zc1vshwfhvygblnmjgrzr"; depends=[]; }; OCA = derive2 { name="OCA"; version="0.5"; sha256="19bayggqkzzpvn7ax8m8xgvz27a03iyybsxjz2vphf03dwsr8c5h"; depends=[mathjaxr]; }; - OCNet = derive2 { name="OCNet"; version="1.0.0"; sha256="03n4f3gpbqz6c1ygak0xqxsjjmy3jx9j1grp5mhwhgpxi16k0sps"; depends=[fields igraph rgdal rgl sp spam SSN]; }; + OCNet = derive2 { name="OCNet"; version="1.0.1"; sha256="1nl094vv2hx30vai7z89r75n7imwx04f28rh416ai81sa2kbzc8g"; depends=[fields igraph Rcpp rgdal rgl sp spam SSN]; }; OCSdata = derive2 { name="OCSdata"; version="1.0.2"; sha256="0119c2i9k63mbz40lbbf7x59nf4yyhrmaynn0m0sh1h3jjbsiazc"; depends=[httr purrr usethis]; }; ODB = derive2 { name="ODB"; version="1.2.1"; sha256="0frkbl99ilpmppm4fm97lbkqhmjgcwlz9j5vh5nzzcsxrh8qwicn"; depends=[DBI RJDBC]; }; ODEnetwork = derive2 { name="ODEnetwork"; version="1.3.2"; sha256="0wicp0xxqq3jl0kjhc26iqpk8rwa9nv2aiwf18pkgnqxbyw6lgnp"; depends=[checkmate deSolve]; }; ODEsensitivity = derive2 { name="ODEsensitivity"; version="1.1.2"; sha256="0yddv5h3y0xfviqjgrbixawd00jc1rh9ngckfqka5j855vhchh66"; depends=[checkmate deSolve ODEnetwork sensitivity]; }; ODMeans = derive2 { name="ODMeans"; version="0.1.0"; sha256="1f8difw0npidsnn9sis8pf73i8p4p5cl63g4v02jaxmlmm184wvf"; depends=[geosphere ggplot2]; }; - ODRF = derive2 { name="ODRF"; version="0.0.3"; sha256="1b3shh7q301rjw5axvszvnmlwccxw1y9mcvl2pai51y5y9y3f9z9"; depends=[doParallel foreach glue lifecycle magrittr nnet partykit Pursuit Rcpp RcppArmadillo rlang]; }; + ODRF = derive2 { name="ODRF"; version="0.0.4"; sha256="017z7yr4r864cxvqyn14fxgmc2rgq01c95sbcmp6qg8dj03bcz53"; depends=[doParallel foreach glue lifecycle magrittr nnet partykit Pursuit Rcpp RcppArmadillo rlang]; }; ODS = derive2 { name="ODS"; version="0.2.0"; sha256="0i7giibass7hadvv6mb7k9xrykgfss57jmm6gpbym8qcywhzq4ny"; depends=[cubature survival]; }; ODataQuery = derive2 { name="ODataQuery"; version="0.5.3"; sha256="058j3rc5kh134ndsxn5gck2xh6llrs73cyxpa5z8zkmsw9am22qj"; depends=[httr jsonlite R6 rlang]; }; OECD = derive2 { name="OECD"; version="0.2.5"; sha256="13f185xvjlhxbg94vmnzvyddidxsbkvffjabp7jkg1zjl4x680s1"; depends=[httr readsdmx xml2]; }; OEFPIL = derive2 { name="OEFPIL"; version="0.1.1"; sha256="0gnbbz2spaqlqqn7978l15jv7xiqpfrh8k9girrpdqih02x95rfw"; depends=[Deriv ggplot2 MASS matrixcalc minpack_lm plyr]; }; OGI = derive2 { name="OGI"; version="1.0.0"; sha256="0qw55jamkvdf3vfa5c0ygbymbs4d9q15dihiqz691hdfnyjvc2mk"; depends=[lpSolve]; }; + OHCSpackage = derive2 { name="OHCSpackage"; version="0.1.5"; sha256="0dr2yxz9amqq9mpl8skhdvs7w01zc4y3sw4wqs0iwj1pj9jb96fz"; depends=[dplyr openxlsx readr tibble]; }; OHPL = derive2 { name="OHPL"; version="1.4"; sha256="0svim112khdymdj1bsj8vri6r0zph5312y148mlh5h98rah40i08"; depends=[glmnet mvtnorm pls]; }; OLCPM = derive2 { name="OLCPM"; version="0.1.0"; sha256="0bylr62ma4wbbkjnp67whlndch1vwilm083wlkrfdnmhwqigzjz0"; depends=[LaplacesDemon RSpectra]; }; ONEST = derive2 { name="ONEST"; version="0.1.0"; sha256="07mfykpkcgcqafw1w3qr9x83zpy2p0q7v1zkgwpd69g79j0r3yap"; depends=[]; }; @@ -3330,7 +3373,7 @@ in with self; { OOI = derive2 { name="OOI"; version="0.1.0"; sha256="0ivxgq539v68kak3zzakywppba0grzh7qn1h404s4ag30cxv0g8p"; depends=[modi]; }; OOR = derive2 { name="OOR"; version="0.1.3"; sha256="13v04rx2q6pbiq7dyd29wvimkr4sbq2f5rnn3a0lcbwr3x35r7h9"; depends=[]; }; OOS = derive2 { name="OOS"; version="1.0.0"; sha256="0jnj5y26rv0i2561mywcxb7aavmpq16ippq6rblb8jiqjd05nhib"; depends=[caret dplyr forecast furrr future ggplot2 glmnet imputeTS lmtest lubridate magrittr purrr sandwich tidyr vars xts zoo]; }; - OPC = derive2 { name="OPC"; version="0.0.1"; sha256="0m7yqk3drj0zz4184bsvzhqzjxl0smfqdkkr7rpg8z3jk8qkvah1"; depends=[MASS]; }; + OPC = derive2 { name="OPC"; version="0.0.2"; sha256="01ljrczj9ds18x40fas4rsca4phqsjaz8w8nvbr7xprf4fp8zpcj"; depends=[MASS]; }; OPDOE = derive2 { name="OPDOE"; version="1.0-10"; sha256="04z944i4f3i0cjnxh32wf7n2dfyynnvkz4lxdkn90flam2np58yv"; depends=[crossdes gmp mvtnorm nlme orthopolynom polynom]; }; OPI = derive2 { name="OPI"; version="2.10.1"; sha256="0yzl3s0bkygwh1mg2fshf370k7hr0iw091k1jpwf92fvym1a68ia"; depends=[]; }; OPTS = derive2 { name="OPTS"; version="0.1"; sha256="0h382gcjq2f4qm63xnqvhjvxyn9w01dzx8964fk6cm2izhw04bk2"; depends=[changepoint cvTools MASS]; }; @@ -3339,7 +3382,7 @@ in with self; { ORFID = derive2 { name="ORFID"; version="1.0.2"; sha256="11g4l45x3jwyffamr2qd0h7y15kyynqqwxh1mp1mnv0lchmdyr89"; depends=[dplyr ggplot2 magrittr openxlsx readr rlang stringr tidyr]; }; ORIClust = derive2 { name="ORIClust"; version="1.0-2"; sha256="036jbfq4klzlppybvcj8wjchcyqmmxwvvr3rn9436cz4zm2yjy4a"; depends=[]; }; ORION = derive2 { name="ORION"; version="1.0.3"; sha256="0zzlvx1yd3hy8dy7nbmkj7d2k6609ys91s894qcgx5n7jirqviy3"; depends=[doParallel e1071 foreach igraph knitr randomForest rmarkdown TunePareto]; }; - ORKM = derive2 { name="ORKM"; version="0.4.0.0"; sha256="10bs8nh5pbnli80p0lgspicw0fkq5q5l14v76dq7y9c44gsh8m1z"; depends=[MASS Matrix]; }; + ORKM = derive2 { name="ORKM"; version="0.7.0.0"; sha256="1sgxbydxl3gv34fnzc8615hziv6a3qmq8vnmys0lwxahxvix11j9"; depends=[MASS Matrix]; }; ORTSC = derive2 { name="ORTSC"; version="1.0.0"; sha256="0byja1gi44ymn68cfai8apcimlxmnflqr1pj8k4y7l8lqd3fyz60"; depends=[googleAuthR googleCloudVisionR]; }; OSCV = derive2 { name="OSCV"; version="1.0"; sha256="17wrfak6b6m2l3iqbhdwcfh0rlqb14rkvrbari7v46gya9v7hq20"; depends=[mc2d]; }; OSDR = derive2 { name="OSDR"; version="1.1.4"; sha256="0yf9l0fkqf9adanl8182nyislj2s2xvsnf2xp5y7pdj3af2k4m7w"; depends=[]; }; @@ -3363,11 +3406,12 @@ in with self; { OenoKPM = derive2 { name="OenoKPM"; version="2.2.1"; sha256="0ppp8ijzgv6qvgjl7cnnp1zkcqnyx4h6gyk1f1qskr9izbz84sv6"; depends=[ggplot2 minpack_lm openxlsx]; }; Ohit = derive2 { name="Ohit"; version="1.0.0"; sha256="132d4drc2phw9ppxnczb1ycdg3dv085k8p6bcaj3v866j0hfxjgb"; depends=[]; }; OkNNE = derive2 { name="OkNNE"; version="1.0.1"; sha256="10kkg6n6fsqm1kir1ay96br1m8adykarmp57bnw900fiblqqa2i0"; depends=[FNN]; }; - OlinkAnalyze = derive2 { name="OlinkAnalyze"; version="3.3.1"; sha256="1mzcb0s5r4hf17dband0vrsvfkwvvnq7n0zmcsyfy07nfwv8bh1a"; depends=[broom car dplyr emmeans forcats generics ggplot2 ggpubr ggrepel lme4 lmerTest magrittr readxl rlang rstatix stringr tibble tidyr tidyselect zip]; }; + OlinkAnalyze = derive2 { name="OlinkAnalyze"; version="3.4.1"; sha256="122rj8ly79cn1l9011agxak560c4rjf1lm7ijj9m8n8k7fxqi8m8"; depends=[broom car dplyr emmeans forcats generics ggplot2 ggpubr ggrepel lme4 lmerTest magrittr readxl rlang rstatix stringr tibble tidyr tidyselect zip]; }; OlympicRshiny = derive2 { name="OlympicRshiny"; version="1.0.0"; sha256="17caq517hqd89qvlsmirrcb7l9ny55rqyfrwhx037s30005mxq9f"; depends=[config dplyr forcats ggplot2 golem shiny shinybusy shinythemes summarytools]; }; OmegaG = derive2 { name="OmegaG"; version="1.0.1"; sha256="1aihcrgml67rvnx9vpnq2nnbc79kicw4ks1fradsa36ykkdz6b1g"; depends=[]; }; OmicKriging = derive2 { name="OmicKriging"; version="1.4.0"; sha256="08frr38yf5d0l3zwkbq9465xrbyzsn8sx9icqc3yvfnxrkhrpzig"; depends=[doParallel foreach irlba ROCR]; }; OmicNavigator = derive2 { name="OmicNavigator"; version="1.13.6"; sha256="18612sicjjx47h45azg8kkqf73shy8xq37b3ra3wgbryp82amqw0"; depends=[data_table jsonlite]; }; + OmicSense = derive2 { name="OmicSense"; version="0.1.1"; sha256="0rxq3siil4gbwrjp04mg970mgsy3vx2kyqldl40039gs0km7zb7n"; depends=[ggplot2 kernlab]; }; OmicsPLS = derive2 { name="OmicsPLS"; version="2.0.2"; sha256="08vx4925j5ln366h7nzhf1ra5ciplrqw911258chi9di7gpm8g50"; depends=[dplyr ggplot2 magrittr softImpute tibble]; }; Omisc = derive2 { name="Omisc"; version="0.1.5"; sha256="0p0iraascyx16y05rpc2c9k25s4crc0wrxy58dpj7jd47g2360ar"; depends=[copula MASS psych]; }; OmnibusFisher = derive2 { name="OmnibusFisher"; version="1.0"; sha256="0x3q04g45nixgsrl4biqqi6bk4kx79spq5whm3n4ppr0nkv8dw4h"; depends=[CompQuadForm stringr survey]; }; @@ -3378,16 +3422,16 @@ in with self; { OneArm2stage = derive2 { name="OneArm2stage"; version="1.1.5"; sha256="14vrf3x625c0xad18pajbgb4d4l57f1gqhy4y2l3wg1m1i2kiyns"; depends=[flexsurv IPDfromKM survival]; }; OneArmTTE = derive2 { name="OneArmTTE"; version="1.0"; sha256="186386pjjvlfq38950n1sdx0wq31q8ggjlqlrn07v68bcqjl70y6"; depends=[dplyr survival tibble tidyr]; }; OneR = derive2 { name="OneR"; version="2.2"; sha256="1k7rzhcwq5b2yi4zfsc1r0yb6w65gxj9835d2a1dclallja3zav2"; depends=[]; }; - OneSampleMR = derive2 { name="OneSampleMR"; version="0.1.2"; sha256="1g2ia06450xy6mbkn13r9wzap1jxz1iw36jiy3699zm9azndd002"; depends=[Formula gmm ivreg lmtest msm]; }; + OneSampleMR = derive2 { name="OneSampleMR"; version="0.1.3"; sha256="18d467bhym9mp41n65rp0wg75f40szc7w5804p3hh9xqw7c3q2qq"; depends=[Formula gmm ivreg lmtest msm]; }; OneStep = derive2 { name="OneStep"; version="0.9.2"; sha256="06gnw364p74nnb9rx3ghyfavd02xmnvzy94hzdwgxqs86z30b2gz"; depends=[fitdistrplus numDeriv]; }; OneTwoSamples = derive2 { name="OneTwoSamples"; version="1.1-0"; sha256="0qa5v3c1f5mckvgmw8zbxqkk1q8k8dig1xg9k8pfyvfxqjard1ny"; depends=[]; }; OpVaR = derive2 { name="OpVaR"; version="1.2"; sha256="1923p60yzh8fycwl1fwy01r7ml5yx0kx01ckhgii7slm4cachf5f"; depends=[actuar evmix MASS pracma ReIns tea truncnorm VineCopula]; }; OpenCL = derive2 { name="OpenCL"; version="0.2-2"; sha256="0gxzda615f67nbljancb8kixzdzkjsy8i0345mlnmlr8kqv4qyhw"; depends=[]; }; - OpenImageR = derive2 { name="OpenImageR"; version="1.2.8"; sha256="1n6wmpg3ir3f23lv036p4k1ccc5mzs2i3m21xljkj4q87mic6nfn"; depends=[jpeg lifecycle png R6 Rcpp RcppArmadillo shiny tiff]; }; + OpenImageR = derive2 { name="OpenImageR"; version="1.2.9"; sha256="073ayw6q8yc9kipb5jizg9271a8mcndl06c02b28d8igaj62jvn4"; depends=[jpeg lifecycle png R6 Rcpp RcppArmadillo shiny tiff]; }; OpenLand = derive2 { name="OpenLand"; version="1.0.2"; sha256="02d1dflcbjvm9hgvsm5gpc3s0n0njf4w3224yqk9nc0i49nw01fi"; depends=[circlize dplyr ggplot2 gridExtra networkD3 raster tidyr]; }; OpenML = derive2 { name="OpenML"; version="1.12"; sha256="0ij4mnbfkckidv9f414fclyhrbbkgmpz5zsjiqa3zlckr3pfaxg7"; depends=[backports BBmisc checkmate curl data_table digest httr jsonlite memoise stringi XML]; }; OpenMx = derive2 { name="OpenMx"; version="2.21.8"; sha256="1vvlb9q3w6i6g7kf0r5jnrlmdxskh3rbfss90icand046rl37qdz"; depends=[BH digest lifecycle MASS Matrix Rcpp RcppEigen RcppParallel rpf StanHeaders]; }; - OpenRepGrid = derive2 { name="OpenRepGrid"; version="0.1.12"; sha256="02p9b2y99z9yrrm2pl86p0yqwah0yjic2wdcd4k0mhccimmmkaip"; depends=[abind colorspace GPArotation openxlsx plyr psych pvclust rgl stringr XML]; }; + OpenRepGrid = derive2 { name="OpenRepGrid"; version="0.1.14"; sha256="1gy06cyjb50673jb9548c9v37im4hsm245r7rwhx280q9fsn17ws"; depends=[abind colorspace crayon dplyr igraph openxlsx plyr psych pvclust rgl scales stringr tidyr XML]; }; OpenRepGrid_ic = derive2 { name="OpenRepGrid.ic"; version="0.6.1"; sha256="1h6n44szm5fa04fsnq0yvqp3m8djxsh5v3y409hzjgvb90vjzmyz"; depends=[dplyr DT formattable igraph magrittr openxlsx RColorBrewer reshape2 rintrojs scales shiny shinyBS shinycssloaders shinydashboard shinydashboardPlus shinyFeedback shinyjs shinythemes shinyWidgets stringr tidyr tidyverse withr]; }; OpenSpecy = derive2 { name="OpenSpecy"; version="0.9.5"; sha256="1m163jyzad6i70d7h98rwdziq9swilj4kwr1mhis2nk8k30ksk4v"; depends=[digest dplyr hexView hyperSpec osfr rlang shiny signal]; }; OpenStreetMap = derive2 { name="OpenStreetMap"; version="0.3.4"; sha256="0kyv14lxi86n6aba4jqmsfpmn075k0ki34q6gkkvhq8yv48wg831"; depends=[ggplot2 raster rgdal rJava sp]; }; @@ -3404,13 +3448,14 @@ in with self; { OptimaRegion = derive2 { name="OptimaRegion"; version="1.2"; sha256="01nbisv45amv5pfnl0hmbc751qjkjvw8xsva50q8ypm02p2jw07f"; depends=[boot DepthProc fields magrittr nloptr Rdpack Rdsdp rsm spam stringr]; }; OptimalCutpoints = derive2 { name="OptimalCutpoints"; version="1.1-5"; sha256="07lgh3maxvz8vmw3zd02bfy7yp4jn0krflnqpp5bax3zhy6kmmbi"; depends=[]; }; OptimalDesign = derive2 { name="OptimalDesign"; version="1.0.1"; sha256="02vxxb25q7fl73y7zq0a89ra0s88wji4mrql7p88014p073lj2as"; depends=[lpSolve Matrix matrixcalc matrixStats plyr quadprog rgl]; }; + OptimalGoldstandardDesigns = derive2 { name="OptimalGoldstandardDesigns"; version="1.0.0"; sha256="19nc1ljj63bivbmfvkm7z89v8b1fp59ya0j8kip3b6sa1yrj6j6p"; depends=[cli dplyr mvtnorm nloptr Rdpack scales tibble]; }; OptimalRerandExpDesigns = derive2 { name="OptimalRerandExpDesigns"; version="1.1"; sha256="033qwzglpzjk302dr19yak34j2k19k6vihd3vlj9c8xsiikmrfmj"; depends=[ggplot2 GreedyExperimentalDesign momentchi2]; }; OptimalSurrogate = derive2 { name="OptimalSurrogate"; version="1.0"; sha256="1kw87h6im3s1xzj0va22w0av67s0qz59vmf36lkh2mi5x1mi7gws"; depends=[MASS]; }; OptimalTiming = derive2 { name="OptimalTiming"; version="0.1.0"; sha256="1mchb7wdk1v56la30ivi40aq6zma64lrdb94d64d0s7x67m8315w"; depends=[mstate survival]; }; OptionPricing = derive2 { name="OptionPricing"; version="0.1.1"; sha256="1x90v95mm1cylq0gnswniaf9imrjd7diid9hcv0vmffz4xa9ixks"; depends=[]; }; - OralOpioids = derive2 { name="OralOpioids"; version="1.0.1"; sha256="0bsbjfpv4wwb1nj6cpb1sqhd56lqziv0w7pgxjx8i02bhj676j7q"; depends=[dplyr forcats ggplot2 magrittr openxlsx plyr purrr readr readxl reshape2 rlang rvest stringr tidyr xml2]; }; + OralOpioids = derive2 { name="OralOpioids"; version="1.1.0"; sha256="1i422my28dn9i2yxf7z856v9rw8g7xwabc9lw79y7ncb4f4qk0vz"; depends=[dplyr forcats ggplot2 magrittr openxlsx plyr purrr readr readxl reshape2 rlang rvest stringr tidyr xml2]; }; Orcs = derive2 { name="Orcs"; version="1.2.3"; sha256="0b2h0vyvp6hnp9i03c8yxfhrlbdq0akdlw2ik0k5c09wfiq7amq6"; depends=[bookdown knitr lattice latticeExtra plotrix Rcpp remotes sf sp terra]; }; - OrdCD = derive2 { name="OrdCD"; version="1.1.1"; sha256="08cxp6rqwrr9k067ykh8ahzbkl6hxazc79ih7w41xddi23zs1qi1"; depends=[bnlearn gRbase igraph MASS Matrix]; }; + OrdCD = derive2 { name="OrdCD"; version="1.1.2"; sha256="1wg4sxirzp8r91qzzvrx4yashg1f574ayaxbviy8hdca3iydfl1j"; depends=[bnlearn gRbase igraph MASS Matrix]; }; OrdFacReg = derive2 { name="OrdFacReg"; version="1.0.6"; sha256="16mavsmp6d8rfmimmp5ynwyzir0gycpg8rhd8cwanlrndyclqlpv"; depends=[eha MASS survival]; }; OrdMonReg = derive2 { name="OrdMonReg"; version="1.0.3"; sha256="1xca8pvvq79j484l2rmn4nva8ncx8z51g5diljikck231y8qjqaz"; depends=[]; }; OrdNor = derive2 { name="OrdNor"; version="2.2.3"; sha256="0yjvylp8z24w6nbwy9rjyk0y7gpzsxzsqm8x4q4fn8g87cb3314v"; depends=[corpcor GenOrd Matrix mvtnorm]; }; @@ -3418,11 +3463,11 @@ in with self; { OrthoPanels = derive2 { name="OrthoPanels"; version="1.2-4"; sha256="1l7fllkswiypdg88l3hy1ckd1gx7visfrzw24wrr2xc265iqyn26"; depends=[MASS]; }; OryzaProbe = derive2 { name="OryzaProbe"; version="0.1.0"; sha256="0sih1pc0ch5w769w7sc56ixppv4njqq31g7n49290kzn8d46i3fw"; depends=[]; }; OscillatorGenerator = derive2 { name="OscillatorGenerator"; version="0.1.0"; sha256="0zqw8l955msxkdviw5vd493749zwc22qby9mfmyqnqqmq0pyjw4w"; depends=[]; }; - OssaNMA = derive2 { name="OssaNMA"; version="0.1.0"; sha256="144ngz5kwq8d4nkv2x5mspsc6b8nqrqrjq0diq8b6aqps1lx8pix"; depends=[DEoptimR NlcOptim]; }; + OssaNMA = derive2 { name="OssaNMA"; version="0.1.2"; sha256="04y36yi1qvxazf0s563d41g91x2190r1c5phkgkfqdcml94dmnln"; depends=[DEoptimR NlcOptim]; }; Ostats = derive2 { name="Ostats"; version="0.2.0"; sha256="0d2qk76issb2k5f2ghfvpq0k8ra7d7nj9hp4ja1s0817zwr0g3zz"; depends=[circular ggplot2 gridExtra hypervolume MASS matrixStats sfsmisc viridis]; }; OutliersO3 = derive2 { name="OutliersO3"; version="0.6.3"; sha256="165v572w9bnvay9f0xyxzbhgj1i86ndia4rzqy98i48dfdbdb990"; depends=[cellWise dplyr FastPCS forcats GGally ggplot2 HDoutliers memisc rlist robustbase robustX tidyr]; }; OutrankingTools = derive2 { name="OutrankingTools"; version="1.0"; sha256="0z7pslkkinn7flc4xwjg0bsfswf8ad4jv9rmglaj3fmjcx9b6wgj"; depends=[igraph]; }; - OwenQ = derive2 { name="OwenQ"; version="1.0.6"; sha256="0ak8haay8fkvi1qmda39bv7mykc97p6aw4igwx3pwgig30d78dkx"; depends=[BH Rcpp RcppEigen RcppNumerical]; }; + OwenQ = derive2 { name="OwenQ"; version="1.0.7"; sha256="0az36s6vrnfa93w12549v9zf6q9xg0a4kvrq5hnkaqxl314zaz1y"; depends=[BH Rcpp RcppEigen RcppNumerical]; }; OxyBS = derive2 { name="OxyBS"; version="1.5"; sha256="11l3gm0jvw993jb13f6kpv77m6z0d1jswscma2v28qzkw053r3dc"; depends=[]; }; PAC = derive2 { name="PAC"; version="1.1.4"; sha256="0h7381mr3jgzl7fi6v7amgmkf5agpkgy068c6ysgh3adlwsh6gs6"; depends=[dplyr ggplot2 ggrepel igraph infotheo parmigene Rcpp Rtsne]; }; PACLasso = derive2 { name="PACLasso"; version="1.0.0"; sha256="1qzzymhfsjy8mk0r0xpd5h4wrx4wk8gq3vi6fnawkq5xkrg26rld"; depends=[lars limSolve MASS penalized quadprog]; }; @@ -3431,8 +3476,9 @@ in with self; { PAGWAS = derive2 { name="PAGWAS"; version="2.0"; sha256="0bz47ivd32kx1amgqllqbxyyvj773q7wasgk924hmibabiixa8nx"; depends=[foreach lars mnormt]; }; PALMO = derive2 { name="PALMO"; version="0.1.2"; sha256="0vh0i5qb26267w5dzply091dh4mcxyza7yyhh7sy2wmwb04834ak"; depends=[circlize ComplexHeatmap cowplot dplyr factoextra ggforce ggplot2 ggrepel knitr lme4 MAST pbapply pheatmap reshape2 Rtsne Seurat tidyverse]; }; PAMhm = derive2 { name="PAMhm"; version="0.1.2"; sha256="0k0n3ni0ypcizri39v76x1vv7hlxlmbpfi7w81yxy9inz7zz4zfw"; depends=[cluster heatmapFlex plyr R_utils RColorBrewer readmoRe readxl robustHD]; }; - PAMmisc = derive2 { name="PAMmisc"; version="1.10.4"; sha256="1bk1q6j5kzqjnlicb8lsz3833nr5p13jd8gqjhwr46f3h05k7anc"; depends=[data_table dplyr geosphere ggplot2 hoardr httr lubridate magrittr ncdf4 PamBinaries purrr RcppRoll rerddap RSQLite seewave stringr suncalc tuneR viridisLite xml2]; }; - PAMpal = derive2 { name="PAMpal"; version="0.17.0"; sha256="09rd9h67y27xwgwfxp6k8nvhi0ccsw6h2kx1m1dd90iicbb03yk2"; depends=[data_table dplyr gam ggplot2 knitr lubridate manipulate PamBinaries PAMmisc purrr reticulate rlang RSQLite seewave signal stringr tidyr tuneR xml2]; }; + PAMmisc = derive2 { name="PAMmisc"; version="1.11.4"; sha256="19qnipkis231fd3ys00hp98lja5l06fnqxyj6vj5pxzhqbrw2ql4"; depends=[dplyr geosphere ggplot2 hoardr httr lubridate magrittr ncdf4 PamBinaries purrr RcppRoll rerddap rjson RSQLite scales seewave suncalc tuneR xml2]; }; + PAMpal = derive2 { name="PAMpal"; version="0.19.1"; sha256="19dbyvlmp22n5qzbr229810r00ff4ikfpr7b094nzsm4km77iz3x"; depends=[data_table dplyr gam geosphere ggplot2 knitr lubridate manipulate PamBinaries PAMmisc purrr reticulate rlang RSQLite seewave signal stringr tidyr tuneR xml2]; }; + PANACEA = derive2 { name="PANACEA"; version="1.0.0"; sha256="19d03bdynjnpfx1hgn4fjq8nqzwgykmkrv227p8jps4y45z8zzb3"; depends=[DBI igraph org_Hs_eg_db reshape2]; }; PAS = derive2 { name="PAS"; version="1.2.5"; sha256="175p3bnpnhknfsc29hri0l2ipz1x6qcxs2bq7awns8lccam466r2"; depends=[glmnet]; }; PASSED = derive2 { name="PASSED"; version="1.2-1"; sha256="1qzxc2xwqw1vc4ld8iask1aijmsl0jhw17rgph08hwl8cqmnm4nd"; depends=[betareg rootSolve]; }; PASWR = derive2 { name="PASWR"; version="1.3"; sha256="1p4896r4k6c0aaag4mwds2azp41amf726c4v62zca92cpsay4nml"; depends=[e1071 lattice MASS]; }; @@ -3440,7 +3486,6 @@ in with self; { PASenseWear = derive2 { name="PASenseWear"; version="1.0"; sha256="0x84j1vdds4g08birmjxb0c2g1ahwv83bk11532jkmg32dnhmj58"; depends=[ggplot2]; }; PAmeasures = derive2 { name="PAmeasures"; version="0.1.0"; sha256="0c2pkms06lijly9clxp6zkasqy4zjicdwnvbqwvhp45yavwmkkkj"; depends=[survival]; }; PAsso = derive2 { name="PAsso"; version="0.1.10"; sha256="1qfwwgcra86x4469bqrv3jdm3vyvdiialfgfy184d1l5294pwv4x"; depends=[copBasic copula dplyr foreach GGally ggplot2 gridExtra MASS pcaPP plotly progress Rcpp VGAM]; }; - PAutilities = derive2 { name="PAutilities"; version="1.1.0"; sha256="0qqxizq856wkx2x5g5pdnb4srh5xj0xyaljbk3i6nq5q41vrw5xk"; depends=[dplyr equivalence ggplot2 lazyeval lubridate magrittr Rcpp reshape2 rlang]; }; PBD = derive2 { name="PBD"; version="1.4"; sha256="1n8gq8ms6gszr469hblipbgalc5m7gfiknpsbqywxml62sr4wbsb"; depends=[ade4 ape DDD deSolve phytools]; }; PBIBD = derive2 { name="PBIBD"; version="1.3"; sha256="0zh73bsiwmsqw1vhs2dazndsf0894kfv3vfv88wr4fnh7njysz6r"; depends=[]; }; PBIR = derive2 { name="PBIR"; version="0.1-0"; sha256="1br53bxqp2bhljph2a0nvdlxf695iknymgwy2drfc7pm383w1ma1"; depends=[cmprsk survival]; }; @@ -3467,7 +3512,7 @@ in with self; { PCMRS = derive2 { name="PCMRS"; version="0.1-4"; sha256="0bf85zv3nl13gsdi96cd2qg7mfppsccs0ci7l204hws8nmbvri83"; depends=[cubature ltm mvtnorm Rcpp RcppArmadillo statmod]; }; PCObw = derive2 { name="PCObw"; version="0.0.1"; sha256="07nfy733vfg19xdkqz1fjxhr6xn4cawbch7bqn93habb477mha1k"; depends=[Rcpp RcppEigen]; }; PCPS = derive2 { name="PCPS"; version="1.0.7"; sha256="0gxymz0yws1q1bxkpxi0lmbv57xx62h3dl7z3i2cnbagswkax3zh"; depends=[ape nlme phylobase picante RcppArmadillo SYNCSA vegan]; }; - PCRA = derive2 { name="PCRA"; version="1.0"; sha256="1rdlw9d3aihvgn8plik07cn3ni7ahjwh1akg5639h7gjkn9151vr"; depends=[boot corpcor data_table lattice PerformanceAnalytics PortfolioAnalytics quadprog R_cache RobStatTM robustbase xts zoo]; }; + PCRA = derive2 { name="PCRA"; version="1.1"; sha256="0326dcshyjvy4yjmr5vd5aqy2rjhzc2slagd7fzz0rdg9l4qy8rp"; depends=[boot corpcor data_table lattice PerformanceAnalytics PortfolioAnalytics quadprog R_cache RobStatTM robustbase xts zoo]; }; PCRedux = derive2 { name="PCRedux"; version="1.1-2"; sha256="1x3a4pdv54ppar9fjshk0avgpxvqsar4x7fgy9w0i76fgndr7qs5"; depends=[bcp changepoint chipPCR ecp fda_usc MBmca pbapply pracma qpcR robustbase segmented shiny zoo]; }; PCS = derive2 { name="PCS"; version="1.3"; sha256="0v9vczc9hml6mzxglh106a9f5gy3x5m471lkzaw3ps8z76sgrpyr"; depends=[multtest statmod]; }; PCSinR = derive2 { name="PCSinR"; version="0.1.0"; sha256="1z8yjryw3c43vc6fxcwiindmyq6r63pc1zr3aybwmys6mv697bb4"; depends=[]; }; @@ -3480,7 +3525,7 @@ in with self; { PDQutils = derive2 { name="PDQutils"; version="0.1.6"; sha256="0mmfi0ifwbkjm0274sddpwkj27cvdkwngnka8vdmfm4b2nn7vgsp"; depends=[moments orthopolynom]; }; PDSCE = derive2 { name="PDSCE"; version="1.2.1"; sha256="1amy4rnvlcfvpma8pqd6wli1j0pjjk49i1qywa43lzgdwgd5dl9v"; depends=[]; }; PDShiny = derive2 { name="PDShiny"; version="0.1.0"; sha256="0s09sywvy83dj06rkxzyi06wfymwnfpgf3lpgjbb8ps8q3byd4vs"; depends=[shiny]; }; - PDtoolkit = derive2 { name="PDtoolkit"; version="1.0.1"; sha256="1y11w6c5y632acad86mrhy05n212bphx2fxhriq1acmbwkmm166y"; depends=[dplyr monobin rpart]; }; + PDtoolkit = derive2 { name="PDtoolkit"; version="1.1.0"; sha256="1k0xj8sq3jh96cp3rlgvhfba0nyl6ssiin04jdk7fhbsnq7437qx"; depends=[dplyr monobin rpart]; }; PEACH = derive2 { name="PEACH"; version="0.1.1"; sha256="0ciq2cci35rv39pgpp7i30jxlmr85726kh07ww22ryq3bm04ylg8"; depends=[MASS metap mnormt]; }; PEGroupTesting = derive2 { name="PEGroupTesting"; version="1.0"; sha256="1z863ard0cc2g8ibxnmxhiqhvs53r6b8gpnavnfchm9432ifcbwi"; depends=[]; }; PEIMAN2 = derive2 { name="PEIMAN2"; version="0.1.0"; sha256="01jsyp9yk576v3bc0a33y0f8w9v4b47g5hc0zahf3zl4bkp8i4wv"; depends=[dplyr forcats ggplot2 glue lifecycle magrittr purrr rlang stringr tidyverse]; }; @@ -3489,27 +3534,28 @@ in with self; { PERK = derive2 { name="PERK"; version="0.0.9.2"; sha256="0x62cmfl71s0mlhd22wifhfvhdvnz4ab6hzwinj549rvvrl8sw3j"; depends=[bs4Dash colourpicker config dplyr DT forcats ggplot2 golem magrittr plotly readr shiny shinyjs shinyWidgets tibble tidyr viridis zoo]; }; PERMANOVA = derive2 { name="PERMANOVA"; version="0.2.0"; sha256="1lmnp1g1i1kqa30cvakkl8g2m2h5jl73qx8dy37kv62mv0knlg5m"; depends=[deldir MASS Matrix scales xtable]; }; PEkit = derive2 { name="PEkit"; version="1.0.0.1000"; sha256="023k4swypw8l4hglqxysd53c5f4fq9v3ibha9jm5kvyg3piw3a4p"; depends=[]; }; + PEtests = derive2 { name="PEtests"; version="0.1.0"; sha256="053vnwbjyh197m3vvzgwl8xikl6dglln00r1jlpsj2w68h1kz4pi"; depends=[]; }; PFIM = derive2 { name="PFIM"; version="5.0"; sha256="0qamdsavbz27zs3m98bpn6680wq8528r5hi1w6f4b49nfl1sbmdx"; depends=[Deriv deSolve filesstrings ggbreak ggplot2 gtable kableExtra knitr markdown Matrix pracma Rcpp rmarkdown scales]; }; PGEE = derive2 { name="PGEE"; version="1.5"; sha256="1qcxbqnbpplnfjy83nm9fj9y4abzgbxnsggzx7ix3vb9qs18cdwh"; depends=[MASS mvtnorm]; }; PGM2 = derive2 { name="PGM2"; version="1.0-1"; sha256="03282pcq7gw47awc2mxjsbz6w3zpqjhqd7fzg8la4p00cd0vvmr4"; depends=[]; }; - PGRdup = derive2 { name="PGRdup"; version="0.2.3.7"; sha256="0zm0cm98nps2bfr66mb4j7a0v3s407zqrl2l2nvzg9yyqlaznzc3"; depends=[data_table ggplot2 gridExtra igraph stringdist stringi]; }; + PGRdup = derive2 { name="PGRdup"; version="0.2.3.8"; sha256="1vz5kjc87cr2f5h0p3079xda27f45wkz7yy50zdvjgs6fhg1jdqq"; depends=[data_table ggplot2 gridExtra igraph stringdist stringi]; }; PH1XBAR = derive2 { name="PH1XBAR"; version="0.10.1"; sha256="0b9g2mz0vcaqmbpm0cisr6c9l2bk5y3bn0s9096dl5fq9hyma7na"; depends=[forecast mvtnorm pracma]; }; PHENIX = derive2 { name="PHENIX"; version="1.3.1"; sha256="1gd9ycrwawi81al4f5v559km1112giwqnwvvk8ynj4kdb5bqpyq4"; depends=[ppcor SuppDists]; }; - PHEindicatormethods = derive2 { name="PHEindicatormethods"; version="2.0.0"; sha256="0amjkkilhgpk6mmwqslj3756pd4mfr2lyq78732pgns31bc9kv3d"; depends=[broom dplyr purrr rlang tibble tidyr tidyselect]; }; - PHInfiniteEstimates = derive2 { name="PHInfiniteEstimates"; version="2.7"; sha256="1igpckqwsasrrwlphggadn7dzxilm3vqdx419wkxfjhpy2q9hbd9"; depends=[coxphf lpSolve nph Rdpack survival]; }; + PHEindicatormethods = derive2 { name="PHEindicatormethods"; version="2.0.1"; sha256="0ypvzg7y7wh167pzblvjjah911kj29w2fr8ycqk03wf8ch9fay1c"; depends=[broom dplyr purrr rlang tibble tidyr tidyselect]; }; + PHInfiniteEstimates = derive2 { name="PHInfiniteEstimates"; version="2.9"; sha256="19w57m9jz60d5yjzchlwgi3aj8ckxp4jy790z601b6jl2a208qc6"; depends=[coxphf lpSolve nph Rdpack survival]; }; PHSMM = derive2 { name="PHSMM"; version="1.0"; sha256="1phfdzhfdhyry11plfd8a2lcn3rg02m84brw7fp2lg3hsxjg5ch7"; depends=[Rcpp RcppArmadillo]; }; PHYLOGR = derive2 { name="PHYLOGR"; version="1.0.11"; sha256="1fq2ny093b4881nwgj6wr8qd5g4dcxb51sdx40ndyxxpq6jj16n9"; depends=[]; }; PHclust = derive2 { name="PHclust"; version="0.1.0"; sha256="18jby44hnk132l0wviqb0wi6nxkg1xisqjh8cxpss2rhwah3l4h1"; depends=[]; }; PHeval = derive2 { name="PHeval"; version="0.5.4"; sha256="06fy5dm4mnp29f01163rw1d1hyl7rlcp4pfw18s87ckpr931qyma"; depends=[survival]; }; PICBayes = derive2 { name="PICBayes"; version="1.0"; sha256="1js6zrnyc8v345cds3pypb2g9dd3vvj3bjq159qc113m9ll2xk0b"; depends=[coda MCMCpack survival]; }; PIGShift = derive2 { name="PIGShift"; version="1.0.1"; sha256="115dnsh4b1rxx1d2kc8x3vl5366h5f0i6gg8l1w3v0f8309qigis"; depends=[ape mvtnorm]; }; - PINMA = derive2 { name="PINMA"; version="1.1-1"; sha256="1vva1vjlxww2d59iyl131j2fylpdghabmrmgmx3rpc22vxj0iawk"; depends=[MASS metafor]; }; + PINMA = derive2 { name="PINMA"; version="1.1-2"; sha256="18sm4j2srwkf1yp487d0hbmmy8max5h9966mq43pf9f2fwa0j4mc"; depends=[MASS metafor]; }; PINSPlus = derive2 { name="PINSPlus"; version="2.0.6"; sha256="0mws1064kwfm3csdzpfn4g2pwjasdmx9nz5x28znxv8hwrlgm2zw"; depends=[cluster doParallel entropy FNN foreach impute irlba matrixStats mclust Rcpp RcppArmadillo RcppParallel]; }; PINstimation = derive2 { name="PINstimation"; version="0.1.2"; sha256="0vys27ws0nk0bqf6pxgr689q3rnyx14ar560004g6pi0ii59mbyk"; depends=[coda dplyr furrr future knitr nloptr Rdpack rmarkdown skellam]; }; PK = derive2 { name="PK"; version="1.3-5"; sha256="1wzz2qv6h6nc2hcsg4098951i608xbbhc9f9ngamfigh5sbmzbh6"; depends=[]; }; PKI = derive2 { name="PKI"; version="0.1-12"; sha256="0nidg6l9nrmpyimi502fydy22r247w9i4ngb2xdbxjvfhr17m0xd"; depends=[base64enc]; }; PKLMtest = derive2 { name="PKLMtest"; version="1.0.1"; sha256="0i1kxczlhn95jw1w7vw87svqhpq9j6xi4fhy974yjx9xhax171hq"; depends=[ranger]; }; - PKNCA = derive2 { name="PKNCA"; version="0.10.1"; sha256="1haf3yd645rcw6nbrj1l5hvqlwmd35fnji9ibrqsqbj1fb5m70r9"; depends=[checkmate digest dplyr nlme purrr rlang tibble tidyr]; }; + PKNCA = derive2 { name="PKNCA"; version="0.10.2"; sha256="1imaj6a8y53hllhfxvmci4qh04pviw0zpwmxm12sqi1nl2kdb5y4"; depends=[checkmate digest dplyr nlme purrr rlang tibble tidyr]; }; PKPDsim = derive2 { name="PKPDsim"; version="1.3.0"; sha256="1n86zl8gka78anny7fj7l95bamckwkv5ijjiihpcfyj7fmac3y72"; depends=[BH data_table jsonlite magrittr MASS randtoolbox Rcpp stringr]; }; PKconverter = derive2 { name="PKconverter"; version="1.5"; sha256="1zk2sjrjhq7n2k2p29r2qc6qdghr3riyjvvawz0g74lidg7hm1ly"; depends=[shiny shinydashboard shinythemes]; }; PL94171 = derive2 { name="PL94171"; version="1.1.2"; sha256="0www52svnfrhf1szgr820zj6fzqxzrlqiyd0vlshajmh3s091jjk"; depends=[cli dplyr httr readr sf stringr tinytiger withr]; }; @@ -3529,7 +3575,7 @@ in with self; { PMCMRplus = derive2 { name="PMCMRplus"; version="1.9.6"; sha256="1mvj3cwrdkl3frk7fvh6l7v7yya5p3xm4z0qhc4fvykxdmb92ivz"; depends=[BWStest gmp kSamples MASS multcompView mvtnorm Rmpfr SuppDists]; }; PMwR = derive2 { name="PMwR"; version="0.18-0"; sha256="1d3bd1k5jqfx0nfac97ghlch5br6d8xh31was4m6skvs1ikqq53h"; depends=[datetimeutils fastmatch NMOF orgutils textutils zoo]; }; PNADcIBGE = derive2 { name="PNADcIBGE"; version="0.7.2"; sha256="0fqx2gyr34dq2lcnjjfmwhqj4givpxdphwn9h1vfb04k0rcgzvpr"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; - PNAR = derive2 { name="PNAR"; version="1.3"; sha256="0flc02rmyw8q410xcyg2ad00ck7b8jyjqw7xym3yaxg6nfbq8w77"; depends=[doParallel foreach igraph nloptr Rfast Rfast2]; }; + PNAR = derive2 { name="PNAR"; version="1.4"; sha256="1fcmn901d18rc89qv3bx66k3y0nccgxnmy372v9wj9gxxa65dsx1"; depends=[doParallel foreach igraph nloptr Rfast Rfast2]; }; PNSIBGE = derive2 { name="PNSIBGE"; version="0.1.8"; sha256="02dw7agywk5ay1fd4gqydh8ibnq35040lbcpfl43wllyh1i4s2hv"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; PNWColors = derive2 { name="PNWColors"; version="0.1.0"; sha256="1phplnclkficfv8s6wsyrckk4ixzbayiy5iix6dddg40485l9nyj"; depends=[]; }; POCRE = derive2 { name="POCRE"; version="0.6.0"; sha256="0kni15dr7qhldn68w51mzg6pyk95dx717qy0f9230hpbg97791hz"; depends=[EbayesThresh ggplot2 pracma]; }; @@ -3539,7 +3585,7 @@ in with self; { POMADE = derive2 { name="POMADE"; version="0.1.0"; sha256="1f9r7bmmc1lblvmb834ss38x2ki4c19mkx9h8i8ygkcdsb931xdv"; depends=[dplyr furrr future ggplot2 magrittr purrr stringr tibble tidyr]; }; POMS = derive2 { name="POMS"; version="1.0.1"; sha256="1ndry1csq7zsccdwd8nq9x4b9zq5j2ffykmhm38ari8n0zxxyrwy"; depends=[ape data_table MASS phangorn phylolm XNomial]; }; POMaSPU = derive2 { name="POMaSPU"; version="1.0.0"; sha256="0jz3jgzdykv0xvfw3ix0hbs32as6dp7p5v8bj5nddknx10d0siya"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; - POSSA = derive2 { name="POSSA"; version="0.6.3"; sha256="0rr3dc16kiym05fh58qpgdbwbmxvkwnphp7hkxp3prm1imgrw1v6"; depends=[data_table]; }; + POSSA = derive2 { name="POSSA"; version="0.6.4"; sha256="02lla3q3wkiw78b5v7pf7ali7s2l6aqc1bbaqf35zyihgiz3598g"; depends=[data_table]; }; POSTm = derive2 { name="POSTm"; version="1.2"; sha256="1fckd5c4hdviwy1b7cmwv8nqkaipfv838yjfsyacj8hxlzdlwlhj"; depends=[ape CompQuadForm]; }; POSetR = derive2 { name="POSetR"; version="1.1.1"; sha256="1p1j6zjgpl3018ym7h8k4ih5bffz2n809h5wm073l85bcm9isznr"; depends=[igraph Rcpp Rdpack]; }; POT = derive2 { name="POT"; version="1.1-10"; sha256="1gd76xc4gs7v3gcqaidnchm60gd2w7x0p6sqrvy38sfr4wbazz1s"; depends=[]; }; @@ -3561,10 +3607,10 @@ in with self; { PQLseq = derive2 { name="PQLseq"; version="1.2.1"; sha256="0lyynzvv7n1igzfrw52021bnxprqcm2hjxmlrsxkx4898ca46g60"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo]; }; PRANA = derive2 { name="PRANA"; version="1.0.3"; sha256="0v1s57gxkn7by2p07bpw8bm6yzi74qn17vf71b6px3ynvqdn87g3"; depends=[dnapath dplyr minet robustbase]; }; PRDA = derive2 { name="PRDA"; version="1.0.0"; sha256="1lklwfakd54ylm5gizq36ng6498c2izapsz9yz2a95cjf860rr23"; depends=[MASS pbapply Rcpp RcppArmadillo]; }; - PRECAST = derive2 { name="PRECAST"; version="1.5"; sha256="1148c9376nhpzyj6xra010g8j8gi6ghx7jkcbi734n4dajx1pana"; depends=[colorspace cowplot dplyr DR_SC ggplot2 ggpubr ggthemes GiRaF gtools MASS Matrix mclust patchwork pbapply purrr Rcpp RcppArmadillo scales scater Seurat]; }; + PRECAST = derive2 { name="PRECAST"; version="1.6"; sha256="1zvg9fbydlxw0j0rs6j0i1kyqny0ai1rgz8sdrm2kq5da9riqwbs"; depends=[colorspace cowplot dplyr DR_SC ggplot2 ggpubr ggthemes GiRaF gtools MASS Matrix mclust patchwork pbapply purrr Rcpp RcppArmadillo scales scater Seurat]; }; PREPShiny = derive2 { name="PREPShiny"; version="0.1.0"; sha256="0zsg07y6nhp2lma3pdz8xd981y3mh8k21il5jv0inma1d1xr4g3f"; depends=[dplyr psycho rmarkdown shiny]; }; PRIMAL = derive2 { name="PRIMAL"; version="1.0.2"; sha256="04fn0c10v9ai7vrrd4qr84rid3x42wq749rn5p1i6nkvmjv3dnhs"; depends=[Matrix Rcpp RcppEigen]; }; - PRIMME = derive2 { name="PRIMME"; version="3.2-3"; sha256="019pcjqygn8v6nwhqrngymi1bkaj190jqvl3jidxx928frnn0b05"; depends=[Matrix Rcpp]; }; + PRIMME = derive2 { name="PRIMME"; version="3.2-4"; sha256="18xb9sznbahw13zy2x8qzl7qalk5md5vpjyfnq6y8a93pb9arzfv"; depends=[Matrix Rcpp]; }; PRISM_forecast = derive2 { name="PRISM.forecast"; version="0.2.1"; sha256="07kq6fprbj8zccs6cx1aiy5mrcg77b0fh42zvg2pimbvr8cqhy31"; depends=[glmnet xts zoo]; }; PRISMA = derive2 { name="PRISMA"; version="0.2-7"; sha256="0sk2d07m8rhipa0kdbaf8ngryda6f1ihp5akpnyw2llajf0x8as5"; depends=[ggplot2 gplots Matrix]; }; PRISMA2020 = derive2 { name="PRISMA2020"; version="1.1.1"; sha256="0jhf1kgcc29b8gsb42b3d5hyfzsa13lz9qgs104ynrzld94kqqwf"; depends=[DiagrammeR DiagrammeRsvg DT htmltools htmlwidgets rio rsvg scales shiny shinyjs stringr webp xml2 zip]; }; @@ -3581,14 +3627,13 @@ in with self; { PRROC = derive2 { name="PRROC"; version="1.3.1"; sha256="1m28h8pcd78049lz2qixhkcr9h5b3jik3maqzfbvq9y58z71i4a7"; depends=[]; }; PRSPGx = derive2 { name="PRSPGx"; version="0.3.0"; sha256="1vvclrp6h63l471qvgwkdhs52lrkapz0v90gwld89zwim6pnh7av"; depends=[bdsmatrix bigparallelr bigsnpr bigsparser bigstatsr gglasso GIGrvg glmnet lmtest Matrix matrixcalc MCMCpack mvtnorm propagate Rfast SGL]; }; PRSim = derive2 { name="PRSim"; version="1.4-2"; sha256="1g729a8h5ik88cfdp0k5gj7hlvbgypvhlhl2wgf2r2wh8grxnpi5"; depends=[goftest lmomco mev splus2R wavScalogram]; }; - PReMiuM = derive2 { name="PReMiuM"; version="3.2.8"; sha256="1hxv4h359fl3lx3d17cq1jjnl423skbp7wccrnrhf68d8h7gx2ff"; depends=[BH cluster data_table gamlss_dist ggplot2 plotrix Rcpp RcppEigen sf spdep]; }; PResiduals = derive2 { name="PResiduals"; version="1.0-1"; sha256="0mq16cs07hw5c9jj08vpgbb15xvjvz9h0npsbqphiibsb6ca5fwb"; depends=[Formula MASS rms SparseM]; }; PSAWR = derive2 { name="PSAWR"; version="0.1.0"; sha256="0qaaw6bxb4p9h1y6fykgn5g7bllr1x1zdp3p1idm3sk30zfpvp94"; depends=[dplyr httr tibble]; }; PSAboot = derive2 { name="PSAboot"; version="1.3.6"; sha256="06ga93vv4w84cd0s5565z4crrqd1ghqk31cmlpiaq5dwx5g0p45g"; depends=[ggplot2 ggthemes Matching MatchIt modeltools party PSAgraphics psych reshape2 rpart TriMatch]; }; PSAgraphics = derive2 { name="PSAgraphics"; version="2.1.2"; sha256="0y67yf77ywm57zrvclgz3ndqrwxbiy0pdqfjq0qgvw5qziqkya4i"; depends=[rpart]; }; PSCBS = derive2 { name="PSCBS"; version="0.66.0"; sha256="14rs2wywipbkia3dbzfhpnkmfgdvm2bf586lggsx63sywlv5d02q"; depends=[aroma_light DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; }; PSF = derive2 { name="PSF"; version="0.5"; sha256="00zwbw9bn5bs181m831nb08wwrmp2jpmqmriy8j52njq289hnc32"; depends=[cluster data_table]; }; - PSGD = derive2 { name="PSGD"; version="1.0.2"; sha256="1dqm1pv6cqcf69bxywwg0q5n98g95b363gszi2k19bkwvh4a1jq9"; depends=[Rcpp RcppArmadillo]; }; + PSGD = derive2 { name="PSGD"; version="1.0.3"; sha256="00013hw99kwk6jlypyb38fly0smyyk6gzxvcfd33n2cbv14jx4gk"; depends=[Rcpp RcppArmadillo]; }; PSLM2015 = derive2 { name="PSLM2015"; version="0.2.0"; sha256="1f8kzlqil2ac8a9fbj9fhdni2narh2yaaz044mlx7gsv2ns3ai19"; depends=[dplyr ggplot2 magrittr]; }; PSPManalysis = derive2 { name="PSPManalysis"; version="0.3.9"; sha256="0wc4rkkwqwjhx54n05bjc2q370bb3ca1c7annxg89bmr9msf8zd1"; depends=[pkgbuild rstudioapi]; }; PSS_Health = derive2 { name="PSS.Health"; version="0.6.1"; sha256="0qsdvps8gghdnbd00p3sqc140aw9kr1ci30rcdwwsa9hzix8y8kh"; depends=[dplyr DT easypower EnvStats epiR ggplot2 ICC_Sample_Size kappaSize longpower plotly powerMediation powerSurvEpi presize pROC pwr pwr2 shiny shinycssloaders shinyFeedback shinyhelper writexl]; }; @@ -3597,14 +3642,15 @@ in with self; { PST = derive2 { name="PST"; version="0.94"; sha256="0f28zrnlficbi9iil6wbh51k9mghpkz63hw05lpmlpx1yl5nd0a6"; depends=[RColorBrewer TraMineR]; }; PSW = derive2 { name="PSW"; version="1.1-3"; sha256="0ahm7rp795d7j88n15b3q0gl573p3g0krc7jd1zv87g4bsdc9b5x"; depends=[gtools Hmisc]; }; PScr = derive2 { name="PScr"; version="1.1"; sha256="0cbmb1z4iwxw82m3f3y5iyr2hd1mgqsrvn7ip4rmsqy3zakyh06s"; depends=[pracma survival VGAM]; }; + PStrata = derive2 { name="PStrata"; version="0.0.1"; sha256="0qdfww7csm8gri47gyrrn23q1a2z0gyfs0ywday6lvlmkyjahdzk"; depends=[abind dplyr ggplot2 lme4 patchwork purrr rlang rstan stringr]; }; PSweight = derive2 { name="PSweight"; version="1.1.8"; sha256="0vawkkgm72s17cjfww9175dyr100lxdv4gf35p2lz8wcnbsklnv5"; depends=[gbm ggplot2 lme4 MASS nnet numDeriv SuperLearner]; }; PTAk = derive2 { name="PTAk"; version="2.0.0"; sha256="1xnjils6i36mpzzg7lpi1bpq90mm4gwp4szk6fcg9i4dvkrznfki"; depends=[tensor]; }; PTE = derive2 { name="PTE"; version="1.7"; sha256="1azkrij4kfmvp03lnzm88gwgvz8g54jq94j0qg8ynxvyjzrppc98"; depends=[doParallel foreach survival]; }; PTERP = derive2 { name="PTERP"; version="1.0"; sha256="1mzb3lm1wrbya5lmgndrkz5arwpz5zr4gfl5bnvcbs0g74xlsa44"; depends=[MASS mvtnorm survival]; }; PTSR = derive2 { name="PTSR"; version="0.1.2"; sha256="0zwqw8zdp0p05nm64yg658iqfbj26n3v2py8r5m6g1sjispm5whf"; depends=[actuar extraDistr numDeriv SuppDists]; }; - PTXQC = derive2 { name="PTXQC"; version="1.0.14"; sha256="1f2xhwyq4bb35v7m6i57hp2ll4bd3y7hhwxml1mb3pbczym70dbl"; depends=[data_table ggdendro ggplot2 gridExtra gtable htmlTable jsonlite knitr magrittr ontologyIndex plyr R6 R6P RColorBrewer reshape2 rmarkdown seqinr UpSetR xml2 yaml]; }; + PTXQC = derive2 { name="PTXQC"; version="1.0.16"; sha256="0p5qzjwwmsvc2b30yk8r543x8nh38ljj2rlb1im502vaxp0nbm19"; depends=[data_table ggdendro ggplot2 gridExtra gtable htmlTable knitr magrittr plyr R6 R6P RColorBrewer reshape2 rmarkdown rmzqc seqinr UpSetR xml2 yaml]; }; PTwins = derive2 { name="PTwins"; version="0.1.1"; sha256="166mc7w52n9d3n72h5jvvhbki87prkils3yigdf57dn9pyixrd66"; depends=[]; }; - PUMP = derive2 { name="PUMP"; version="1.0.1"; sha256="1065w0dj8acjr3xrbwrrq65rgsb389xs4fsp8frgbarp0lhsrfmp"; depends=[dplyr future ggplot2 ggpubr glue lme4 magrittr mvtnorm purrr randomizr readr rlang stringr tibble tidyr tidyselect]; }; + PUMP = derive2 { name="PUMP"; version="1.0.2"; sha256="0q1yx46vfpdm5n5ci49aqfiiccv9g4dw6f2a8sn2m0b06r7kag0h"; depends=[dplyr future ggplot2 ggpubr glue lme4 magrittr mvtnorm purrr randomizr readr rlang stringr tibble tidyr tidyselect]; }; PUPAIM = derive2 { name="PUPAIM"; version="0.3.1"; sha256="1sypmlpjsdn2rm6pci64xv6ibixz43zhjaw0k8q9jp3cajbb11qh"; depends=[ggplot2 Metrics nls2]; }; PUPAK = derive2 { name="PUPAK"; version="0.1.1"; sha256="1274z53qclddww90qgnl9vwdnxv2p66lclmq9fixchnpgm9xc6qw"; depends=[ggplot2 Metrics nls2 segmented]; }; PUPMCR = derive2 { name="PUPMCR"; version="0.1.0"; sha256="0pbxqa1d5b5gjwqwan0rsigzv4dcgjqn8gnzgf3sjsvi0xwz956z"; depends=[colordistance readxl]; }; @@ -3643,17 +3689,18 @@ in with self; { ParallelLogger = derive2 { name="ParallelLogger"; version="3.1.0"; sha256="1cjm498831wzcdfbj6r75agbhw99mccrfvzjcvj7jzz0k82ha4b7"; depends=[jsonlite snow xml2]; }; ParallelPC = derive2 { name="ParallelPC"; version="1.2"; sha256="07y7xb16865khxkvwsk1yglzyy7ja4aj2wpkipaz48i77c3x8bi2"; depends=[]; }; ParamHelpers = derive2 { name="ParamHelpers"; version="1.14.1"; sha256="088sl3az4ysq8cyw82brdn9xm5yy7rqskxih462d1m5hi62gyl04"; depends=[backports BBmisc checkmate fastmatch]; }; - Pareto = derive2 { name="Pareto"; version="2.4.2"; sha256="0396jixa4scqcgq8qyhin91mppg4knz2bfik67jh119clwdrd8vj"; depends=[]; }; + Pareto = derive2 { name="Pareto"; version="2.4.5"; sha256="19mawxs743i7lb9inh51xdfpx0s72cvcw4iylr250r17r6qp4y8g"; depends=[]; }; ParetoPosStable = derive2 { name="ParetoPosStable"; version="1.1"; sha256="1fwji5wrhbxr089dll812csamvb5q2pxn1607rpirarifgfbj28m"; depends=[ADGofTest doParallel foreach lmom]; }; PartCensReg = derive2 { name="PartCensReg"; version="1.39"; sha256="0blzv57cbxqghkz4fc3plvrcw80g0kx17dzmajkfv598m1wm6hc8"; depends=[Matrix optimx ssym]; }; Partiallyoverlapping = derive2 { name="Partiallyoverlapping"; version="2.0"; sha256="0pb0digyigqyzb0zqikgz002kqf1xprcjhxr62a7iqbzy1yycayf"; depends=[]; }; + PatientProfiles = derive2 { name="PatientProfiles"; version="0.1.0"; sha256="1kkynsiwvbfaic9jqnw4j7ym65a77smkb4s29n9lbwnv0jm022g5"; depends=[CDMConnector checkmate cli DBI dplyr lubridate magrittr rlang SqlRender tibble tidyr]; }; Patterns = derive2 { name="Patterns"; version="1.4"; sha256="12ci26i0ks23ff11g3pmsns5f3crnrac2hnlqc2pglhrv180m37r"; depends=[abind gplots igraph jetset lars lattice limma Mfuzz movMF nnls plotrix repmis SelectBoost tnet VGAM WGCNA]; }; PdPDB = derive2 { name="PdPDB"; version="2.0.1"; sha256="05aqg0rqrnlmvjxa32ms1vywgwhw5zlfkyf2ij0fn06rp8l2z3lv"; depends=[dendextend plyr tseries]; }; Peacock_test = derive2 { name="Peacock.test"; version="1.0"; sha256="0ypvwywipyh8lm8xkazsfjgjpvvyi2g8kid63qff11372p33m6xs"; depends=[]; }; PeakError = derive2 { name="PeakError"; version="2021.7.1"; sha256="0rsh81p0w11zp8rgxx9cm8537gxhf9hx6xizpbflfx60xhr96is5"; depends=[]; }; PeakSegDP = derive2 { name="PeakSegDP"; version="2017.08.15"; sha256="1ndf4d4ikcyqi0k51kil2jw777z4c1m4pda3dahrjmjyz0jhrhkw"; depends=[]; }; PeakSegDisk = derive2 { name="PeakSegDisk"; version="2022.2.1"; sha256="1wvsg87frdyi7q58b438n331irlgm7wnfd3rf3ca5m636xz6cnr9"; depends=[data_table]; }; - PeakSegJoint = derive2 { name="PeakSegJoint"; version="2022.4.6"; sha256="0y4vlkr5npqk0nrcv9dqy1gdk2h9z7wajiiw9ijmv1fdg5csn6bh"; depends=[PeakError penaltyLearning]; }; + PeakSegJoint = derive2 { name="PeakSegJoint"; version="2023.4.24"; sha256="0yak9dyy3a6jncgdh4p6q4xxc2pddb0zifs68ivmpq4gf38lksj3"; depends=[PeakError penaltyLearning]; }; PeakSegOptimal = derive2 { name="PeakSegOptimal"; version="2018.05.25"; sha256="0j39jzy4r0h787vs3klgbpcmb096ds3hzhvv5w3xs53kl0qkypj4"; depends=[penaltyLearning]; }; PearsonDS = derive2 { name="PearsonDS"; version="1.2.3"; sha256="03px5flcnxiqgm17gjn193x0fvzfc4l71hdh48p55lk9jiwqg6na"; depends=[]; }; PearsonICA = derive2 { name="PearsonICA"; version="1.2-5"; sha256="04xi911wzkgsh1ajqamgwgv7wnpgyc20brjcr4jh6gfkfhacjprv"; depends=[]; }; @@ -3661,7 +3708,7 @@ in with self; { PenCoxFrail = derive2 { name="PenCoxFrail"; version="1.0.1"; sha256="0snjf8jxzyf30xj3wx9p6g073dqw592l1j1c6yxfg8y4kgzhzwq7"; depends=[Matrix Rcpp RcppArmadillo survival]; }; PenIC = derive2 { name="PenIC"; version="1.0.0"; sha256="0vcqawmbm8z6lkcxfq1b2png9viz5q669npbv0s7dn6smwhanlzz"; depends=[MASS Matrix numDeriv]; }; PepSAVIms = derive2 { name="PepSAVIms"; version="0.9.1"; sha256="0m4jrq6wcjy0k80gvrnm9f7kvi1ifx9182xfq0psyaxpj0ggvzij"; depends=[elasticnet]; }; - Peptides = derive2 { name="Peptides"; version="2.4.4"; sha256="1yppbcsa0rb74mmspb6f6c9slcjy5x6c484dk9gy48sg33chp1zw"; depends=[Rcpp]; }; + Peptides = derive2 { name="Peptides"; version="2.4.5"; sha256="1ld2xgrc6az2fqj4ib52z3kd6500mxyqcm5v9b5dz15pjbqgjgf1"; depends=[Rcpp]; }; PerFit = derive2 { name="PerFit"; version="1.4.6"; sha256="13917nvxii8pg69h1wcpmlv45sdrdldd3zxdrypr4mn456ff74k4"; depends=[fda Hmisc irtoys ltm MASS Matrix mirt]; }; Perc = derive2 { name="Perc"; version="0.1.6"; sha256="1nwbj56m7pxrg8dyv36501b0lvpq8gbhcr07vs4nps8n3rqwwg81"; depends=[]; }; PerfMeas = derive2 { name="PerfMeas"; version="1.2.5"; sha256="13yjk0kwpbsqwl056hzf0zj2br1mk4faqcn1whdfxmq348c14hjb"; depends=[graph limma RBGL]; }; @@ -3678,7 +3725,7 @@ in with self; { PhageCocktail = derive2 { name="PhageCocktail"; version="1.0.3"; sha256="0lr1gnwpaqrf8ny5ssx2cjv8hi6q2ilmr7qif3jl9agh4w0nkp89"; depends=[bipartite factoextra readxl RJSONIO smerc stringr]; }; Phase123 = derive2 { name="Phase123"; version="2.1"; sha256="0bz867wsnrflzlzrql1vgacymx70rb9wik9jw3g34i2vigpl8x8i"; depends=[Rcpp RcppArmadillo survival]; }; Phase12Compare = derive2 { name="Phase12Compare"; version="1.5"; sha256="0n9rjgdllpnj451a8d4p8x3mjf23czcmk7cn1c9v3l7mg4jn18h2"; depends=[mvtnorm Rcpp RcppArmadillo]; }; - PhaseType = derive2 { name="PhaseType"; version="0.2.0"; sha256="0vcmvixb2flrn7qz3568whg5njkxny4hxlmf3ybyi9shfb7jss0a"; depends=[coda ggplot2 reshape]; }; + PhaseType = derive2 { name="PhaseType"; version="0.2.1"; sha256="0bqnz6rn0x8xg9qlcn2yqdkmvddc96xasnq9pb36gb8gx19p68fy"; depends=[coda ggplot2 reshape]; }; PhaseTypeR = derive2 { name="PhaseTypeR"; version="1.0.4"; sha256="063hl41jnzya189g8pm0kjvh7w4h31hfb4zhvrnh6nk4kr5xa70m"; depends=[expm igraph]; }; PheCAP = derive2 { name="PheCAP"; version="1.2.1"; sha256="00dfy0iby21kqfxz2npz4dn1klxcdlll8xrk2hsmc56fjfidbdhz"; depends=[glmnet RMySQL]; }; PheNorm = derive2 { name="PheNorm"; version="0.1.0"; sha256="10223yfaajzq1ip5qj3kk6iyjzrbb619jkrsxawb0dpkrj56d8v7"; depends=[]; }; @@ -3697,7 +3744,7 @@ in with self; { PieceExpIntensity = derive2 { name="PieceExpIntensity"; version="1.0.4"; sha256="023hq0gg1vi0j3yf8p5lisgs8wfp5qwyd4akxxzx7wad2985gxb3"; depends=[Rcpp RcppArmadillo]; }; Pijavski = derive2 { name="Pijavski"; version="1.0.3"; sha256="0jspc19fn1mqv3zjr89sy7rqbbyjk3ij3rhrg2dsw167w63lpykx"; depends=[Rcpp]; }; PlackettLuce = derive2 { name="PlackettLuce"; version="0.4.2"; sha256="05m6r2fb2h0yl5wz2g2c4ffm6gnwr3rynsj841951nh6kjb65r0s"; depends=[CVXR igraph Matrix matrixStats partykit psychotools psychotree qvcalc R6 RSpectra sandwich]; }; - PlaneGeometry = derive2 { name="PlaneGeometry"; version="1.3.1"; sha256="1ylf7770pz16gh823kf3r2lh5cipkm81s1d9nwp01rapi4zzb6cd"; depends=[fitConic gsl R6 sdpt3r stringr uniformly]; }; + PlaneGeometry = derive2 { name="PlaneGeometry"; version="1.4.0"; sha256="1na7rjkshmg4m0fmksrqbm5zzkb8aynv4n2ry27v5jvm9ji4jrw9"; depends=[Carlson CVXR fitConic R6 rcdd sdpt3r stringr uniformly]; }; Planesmuestra = derive2 { name="Planesmuestra"; version="0.1"; sha256="0v7l4hrfckcf7zmk0ihq2ij0qli7x12j17vd6752d1yjk27fgk57"; depends=[]; }; PlanetNICFI = derive2 { name="PlanetNICFI"; version="1.0.4"; sha256="0xjvdz1vk8wkq8b58l9rm2x4nci76k09kx3vdjhqjgcq0a4kyvql"; depends=[data_table glue httr sf terra]; }; PlasmaMutationDetector = derive2 { name="PlasmaMutationDetector"; version="1.7.2"; sha256="0qra7q2pzw212qylyrfhv6zjcsldfw84b93cari0qjqnw4gyfph2"; depends=[GenomicRanges ggplot2 robustbase Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; @@ -3709,6 +3756,7 @@ in with self; { PlotBivInvGaus = derive2 { name="PlotBivInvGaus"; version="0.1.0"; sha256="1qgrg43ry9carhn49zbm24gy77k1z7xnvgmr78xwg6b6j1v6xd8d"; depends=[plotly]; }; PlotContour = derive2 { name="PlotContour"; version="0.1.0"; sha256="0jjzrxmx1k1s8fyfs9m5a864pmvjh2bdklbhrc3nbhb0c7wd3h9z"; depends=[KernSmooth MASS]; }; PlotPrjNetworks = derive2 { name="PlotPrjNetworks"; version="1.0.0"; sha256="13kbyx2phxb3kss6l32f7krf4k5i350indlsmbhav686v0h3nsgp"; depends=[ggplot2 reshape2]; }; + PlotTools = derive2 { name="PlotTools"; version="0.2.0"; sha256="00m98knn8swr430a1r4lnn9cby4w977vk80wfxsdm4pv5gsrl9z0"; depends=[]; }; PoA = derive2 { name="PoA"; version="1.2.1"; sha256="0y8aqz1ainxdglxlfp9iqhvkmirpmc7dvwrcxz2l8lln86yrfqx6"; depends=[dplyr nloptr pracma tibble]; }; PoDBAY = derive2 { name="PoDBAY"; version="1.4.3"; sha256="1c1dmggcc8k4h56063r97gjavd44llc51j54qs1wck9zir414i8w"; depends=[dplyr ggplot2 Rcpp]; }; PoPdesign = derive2 { name="PoPdesign"; version="1.0.3"; sha256="1xh58196p4ldgkzbs04rd2y4pv2qakik6kqsyddyy844ii2jxy69"; depends=[Iso knitr magick]; }; @@ -3746,8 +3794,6 @@ in with self; { PopulationGrowthR = derive2 { name="PopulationGrowthR"; version="0.1.1"; sha256="0cq7vnmslb4y9d9a4jk7z5xajw4vr2q1qqhkak9m9gidyr4dp5zl"; depends=[dplyr]; }; PortRisk = derive2 { name="PortRisk"; version="1.1.0"; sha256="05yxqcv0cijy3s9zx68f9xy59jv55kmj3v0pz5pgl17j23kb9rlc"; depends=[copula MASS MCMCpack tseries zoo]; }; PortfolioAnalytics = derive2 { name="PortfolioAnalytics"; version="1.1.0"; sha256="1jy89brrdw8ilbi9pjxxq5yhqw85ik4kzdd2sa60crjlhvipx0ff"; depends=[foreach PerformanceAnalytics xts zoo]; }; - PortfolioEffectEstim = derive2 { name="PortfolioEffectEstim"; version="1.4"; sha256="1sfgkwyn7vfy3rqb1cglywiv5xmyxhzvj38vgrvfq5jf3hvzsg21"; depends=[PortfolioEffectHFT rJava]; }; - PortfolioEffectHFT = derive2 { name="PortfolioEffectHFT"; version="1.8"; sha256="0y4x0d91j6g52136d921hfs5swzf85gkxafxfkf3c15dl5ns120v"; depends=[ggplot2 rJava zoo]; }; PortfolioOptim = derive2 { name="PortfolioOptim"; version="1.1.1"; sha256="01fw1zr1gr6nlcgw8dlc66b3ygkl6w571lw73p13h0q17y1i872d"; depends=[Rsymphony]; }; PosRatioDist = derive2 { name="PosRatioDist"; version="1.2.1"; sha256="0hjjnc3k12ckydi0kk1l2z5dsni7zbjk346b50markzmd18qppcn"; depends=[mvtnorm]; }; PostcodesioR = derive2 { name="PostcodesioR"; version="0.3.1"; sha256="0mxfcc913l6mhijzfn5rqmri7qbdg1g94g4nqadyxkzw067w7drh"; depends=[httr]; }; @@ -3757,12 +3803,13 @@ in with self; { PowerNormal = derive2 { name="PowerNormal"; version="1.2.0"; sha256="1kryqcjvgwk0l4z3gqxdiz47mha3jw5583jlb9z7ml6v7cam06sm"; depends=[]; }; PowerTOST = derive2 { name="PowerTOST"; version="1.5-4"; sha256="0k7vbgw0jswynwrammzzlc5radszjyqw9y5h3kh22bzpq4njvl1z"; depends=[cubature mvtnorm TeachingDemos]; }; PowerUpR = derive2 { name="PowerUpR"; version="1.1.0"; sha256="0bnkngdqhzhsbkzp4cxhgm8rzn83q4vm3fj2gkp7z4qznp37lh3j"; depends=[]; }; - PracTools = derive2 { name="PracTools"; version="1.3"; sha256="0xnf61cm8gl9wxrhgw7f7c9lv20f43ixxbrspi5s8fgi024s85bs"; depends=[dplyr geosphere ggplot2 usmap]; }; + PrInDT = derive2 { name="PrInDT"; version="1.0.1"; sha256="0z03d87bnp2cf2k4m25il2wqglj53g5mdz7wpjzvsklnzsmxdbmy"; depends=[MASS party splitstackshape stringr]; }; + PracTools = derive2 { name="PracTools"; version="1.4"; sha256="1am672g4nqd8bpy1597hn945j36yphddscq2237np9nfv7rh8yx0"; depends=[dplyr geosphere ggplot2 usmap]; }; PracticalEquiDesign = derive2 { name="PracticalEquiDesign"; version="0.0.3"; sha256="0jms5j9vg5g1llwkzjglj6k26wgj16jxdigllra4gjzk0azbgn9q"; depends=[dplyr ggplot2 numDeriv Temporal tidyr]; }; PreKnitPostHTMLRender = derive2 { name="PreKnitPostHTMLRender"; version="0.1.0"; sha256="1749cd734f4bf0n4068s2m617k6as8h9bwp44mm3la2xy3vjf5g1"; depends=[knitr rmarkdown XML]; }; PreProcess = derive2 { name="PreProcess"; version="3.1.7"; sha256="1fxzkmrj76mc94xdj7a0nq450021i1jxkigmh5jhrmamkp5581jf"; depends=[oompaBase]; }; PreProcessing = derive2 { name="PreProcessing"; version="0.1.0"; sha256="08wrdg3q7r8h7lqn3yppl3qqlhnaak81vd9ymqlkzw92981rxxzx"; depends=[ggplot2]; }; - PreciseSums = derive2 { name="PreciseSums"; version="0.5"; sha256="18lkvh4p8cfh76530bsmb70qz32xi6qvv50v7jsd3f3bpyi5jsps"; depends=[]; }; + PreciseSums = derive2 { name="PreciseSums"; version="0.6"; sha256="16ycz7rcslhfc9g4z04klq9hb9fpzmrn4rysyl4zky85mlhs60gk"; depends=[]; }; PredCRG = derive2 { name="PredCRG"; version="1.0.2"; sha256="0z84p8l2q66rapb9lhx8m8iadz3q989q5qkvcp8ylv80cz6qkibx"; depends=[Biostrings e1071 kernlab Peptides protr]; }; PredPsych = derive2 { name="PredPsych"; version="0.4"; sha256="00h4p1szqzh4a2kjvlriyinh330cfwxsrvs6fi089mr207q890vj"; depends=[caret e1071 ggplot2 MASS mclust party plyr randomForest rpart statmod]; }; PredictABEL = derive2 { name="PredictABEL"; version="1.2-4"; sha256="144xmfsp62ssmg501f4y173jrqyv8vps36j4yrwg6ghcmyc01wf8"; depends=[Hmisc lazyeval PBSmodelling ROCR]; }; @@ -3771,7 +3818,7 @@ in with self; { PressPurt = derive2 { name="PressPurt"; version="1.0.2"; sha256="05kca0rlhlvhgnw3r3p4sh42zwvhrhcjdwz65ykp14jxybfhc8in"; depends=[data_table ggplot2 gridExtra reticulate]; }; PrettyCols = derive2 { name="PrettyCols"; version="1.0.1"; sha256="1q4l9138kdbk8m35k3am4qksi14rcfd793lplm3s1d17dh7zqb5f"; depends=[ggplot2 purrr]; }; PrevMap = derive2 { name="PrevMap"; version="1.5.4"; sha256="12cw4dmbsnx9c4y5l5k0paqn1wwbxy9ciw46r254n5rd275fhksh"; depends=[lme4 Matrix maxLik numDeriv pdist raster splancs truncnorm]; }; - PriceIndices = derive2 { name="PriceIndices"; version="0.1.6"; sha256="0ngdj2m25baszlsr9k4d8iyvlkxp8wfc5np68n9nbpnlh7hk6bvf"; depends=[caret dplyr ggplot2 lubridate reclin2 reshape strex stringr xgboost]; }; + PriceIndices = derive2 { name="PriceIndices"; version="0.1.7"; sha256="10xkp8dpqyl83xxx5d37bc1m9qlg15nc7p9fdybisymgjh5irm4z"; depends=[caret dplyr ggplot2 lubridate reclin2 reshape strex stringr xgboost]; }; PriorGen = derive2 { name="PriorGen"; version="2.0"; sha256="0fa5f8m6sqcljfm5qla7spwvkpa2brp5l4kmrw2qa3xb4hn34l4j"; depends=[nleqslv rootSolve]; }; PrivateLR = derive2 { name="PrivateLR"; version="1.2-22"; sha256="0d142fa3wk7yadvs8jszajs6hq9m03p0j6h5r4pbw7j0d1l72hgc"; depends=[]; }; ProAE = derive2 { name="ProAE"; version="0.2.12"; sha256="187p3i6gbcqycdl02n6nw529n8hkwd87qsy4d37bm0jgn21d2adj"; depends=[DescTools dplyr ggnewscale ggpattern ggplot2 ggtext gridExtra Hmisc magrittr]; }; @@ -3782,7 +3829,6 @@ in with self; { ProTrackR = derive2 { name="ProTrackR"; version="0.3.7"; sha256="15m8g9v254avi68qr7v5q4fzhclkv1q849sj69fs0c9qcli1x384"; depends=[audio lattice signal tuneR XML]; }; ProbBayes = derive2 { name="ProbBayes"; version="1.1"; sha256="0bkbqyrmpy9swaxsl91w6iiw81znjf1lk4b0vqgn6wdnrir6gkmn"; depends=[ggplot2 gridExtra LearnBayes shiny]; }; ProbMarg = derive2 { name="ProbMarg"; version="1.0.1"; sha256="02qc6c08vfg3inh14d3dzq28zgsgk9p7kb2ni9d14pcx5w9q6sji"; depends=[]; }; - ProbReco = derive2 { name="ProbReco"; version="0.1.2"; sha256="1f56r0w3rxwdyiq7r18mm8a5j80p3dwcnphgxyy6h5binzdwyfgx"; depends=[BH mvtnorm purrr Rcpp RcppEigen RcppParallel Rdpack StanHeaders]; }; ProbSamplingI = derive2 { name="ProbSamplingI"; version="0.1.0"; sha256="1s72jvzayrscn5k43gwip28lax4k24b6piy1wmwvkmpf2xx57wiv"; depends=[]; }; ProbYX = derive2 { name="ProbYX"; version="1.1-0.1"; sha256="1arxk01c3aff7hfqjy1a398548jmz15hs70shh4a40qw2f9f995m"; depends=[rootSolve]; }; ProbeDeveloper = derive2 { name="ProbeDeveloper"; version="1.1.0"; sha256="0ixmxa8sndd16062xd4vivagzd0ghb8d3n153i2wg7rq7g85c1dg"; depends=[Biostrings TmCalculator]; }; @@ -3817,7 +3863,7 @@ in with self; { Q7 = derive2 { name="Q7"; version="0.1.0"; sha256="09jhqraajvlm7iiri4f7xlllkcx8q5h3sg472ishj47wg5qf2rym"; depends=[magrittr]; }; QAIG = derive2 { name="QAIG"; version="0.1.7"; sha256="04ygizvplvrzhf1p0vwj75x7k8sl0ym5zbrsvn63y983awih2p6i"; depends=[Formula stringr]; }; QBMS = derive2 { name="QBMS"; version="0.9.1"; sha256="0b8q8z1jgzy2jd1rm7hfqf2j2rdq9las4sjqfy9cn8d5aahzvqm7"; depends=[httr jsonlite RNetCDF]; }; - QCA = derive2 { name="QCA"; version="3.18"; sha256="0xkzyi20p23zjbrdidaa9ikn3pj4vs25qxpib2vhmix1q4gz3sxx"; depends=[admisc shiny venn]; }; + QCA = derive2 { name="QCA"; version="3.19"; sha256="0j1p6pmqa8g7xwwxjgwjzr87mpd6v6y2fjvpbdgi2i0v3pqgks32"; depends=[admisc shiny venn]; }; QCAcluster = derive2 { name="QCAcluster"; version="0.1.0"; sha256="094p11c9arry793zibr8x3xhpbrym9bfky95nds53g3yliprdd63"; depends=[data_table magrittr plyr purrr QCA rlist stringi testit UpSetR]; }; QCApro = derive2 { name="QCApro"; version="1.1-2"; sha256="1glfb1x1h05cs07nq5glqvlil58wp3c0kaxi1l7k94y797i8r7hq"; depends=[lpSolve]; }; QCAtools = derive2 { name="QCAtools"; version="0.2.3"; sha256="1q49l2mf02hqvz2ahqjdx7i3yxniy7dn2s74xjl9l6zdq8bypfw2"; depends=[directlabels ggplot2 QCA stringr]; }; @@ -3833,7 +3879,7 @@ in with self; { QGameTheory = derive2 { name="QGameTheory"; version="0.1.2"; sha256="0h3qkb0zg6km3s89bjnv9503hgcng4wfywfy1x5dsbj5azs9hs5w"; depends=[dplyr R_utils RColorBrewer]; }; QGglmm = derive2 { name="QGglmm"; version="0.7.4"; sha256="0ghvicz4ia1180byj28lmg49889hqhb94g1jrkhm6hnzgqbjnfmd"; depends=[cubature]; }; QHOT = derive2 { name="QHOT"; version="0.1.0"; sha256="02z0n2jawd6m7bvyvpcy0j13p1c0zm036g62n56xva18qnq5c9lb"; depends=[]; }; - QHScrnomo = derive2 { name="QHScrnomo"; version="2.2.0"; sha256="1g7gx1mhvqnldqwi9dx5f7nxqrra9mgfn5rq467f1nhlv6m2kzn6"; depends=[cmprsk Hmisc rms]; }; + QHScrnomo = derive2 { name="QHScrnomo"; version="3.0.0"; sha256="1lr5x0cz1lkvcglhyvxy2pbg4bvvn46ii6vr5zwlm3zg05jhzx1v"; depends=[cmprsk Hmisc rms]; }; QI = derive2 { name="QI"; version="0.1.0"; sha256="1r65xq892mga54dfbh5va5zji5d1dx8k0fy611kbdviwqf0dfhx5"; depends=[ggplot2]; }; QLearning = derive2 { name="QLearning"; version="0.1.1"; sha256="1bx77yxsnzh0ny3ghala5fw54lxzrxqk9s32qk3dzvfbyp4paggn"; depends=[]; }; QQperm = derive2 { name="QQperm"; version="1.0.1"; sha256="06xhv54zgnx8i22j23a0dqxhh7my416idpkkwq93qd1rdzgamzc8"; depends=[]; }; @@ -3856,7 +3902,7 @@ in with self; { Qapprox = derive2 { name="Qapprox"; version="0.2.0"; sha256="0mv3xfy847lqh95mpccjiw5jjbml7dwrna7i16532sdqcxaq4m02"; depends=[]; }; Qardl = derive2 { name="Qardl"; version="0.1.1"; sha256="1sb6xp8hm4rh30dfnw9n5x10hr3sd9p0cv98fr31kdaiqji0vglw"; depends=[dplyr MASS Matrix pbapply quantreg]; }; Qest = derive2 { name="Qest"; version="1.0.0"; sha256="02q0j4vynk3hhfg1xfgdvp3piicc4cc1s1i1q710d06r8mmfz1cj"; depends=[matrixStats pch survival]; }; - Qindex = derive2 { name="Qindex"; version="0.1.2"; sha256="1j0ncn18sxgnkd1dpmf8wndz8061zlmv2bvc7aq5v1vhihb9k41r"; depends=[boot matrixStats mgcv rpart survival]; }; + Qindex = derive2 { name="Qindex"; version="0.1.3"; sha256="15xwnyimylixhv5p0y386ll2lj8b5l9pawfpnjahcf2j2mbkhmbn"; depends=[boot matrixStats mgcv pracma rpart survival]; }; QoLMiss = derive2 { name="QoLMiss"; version="0.1.0"; sha256="00g1ykwlmc4w0bmzj0jg9ckr2bvkl8qcxd67wdc12alccqqd584v"; depends=[dplyr missMethods survival]; }; QregBB = derive2 { name="QregBB"; version="1.0.0"; sha256="0rihfd2542wpfv43115pkxh233ma1qwkwxivawqs9f4faypyi5mh"; depends=[quantreg]; }; Qtools = derive2 { name="Qtools"; version="1.5.6"; sha256="1dgvx4c2nvyy7d5yw8fs241k68621ynbx4r8bjlnrdq1c5wd2iww"; depends=[boot glmx gtools MASS Matrix np numDeriv quantreg Rcpp RcppArmadillo]; }; @@ -3871,7 +3917,7 @@ in with self; { QuantileNPCI = derive2 { name="QuantileNPCI"; version="0.9.0"; sha256="043lkg1pyaja7a4f9lmcwrvdjpfly2z378s15snwnxj8vb5pgr38"; depends=[]; }; QuantumOps = derive2 { name="QuantumOps"; version="3.0.1"; sha256="0gl1myf7q444imyvsjvxiaxaahf0n0bsggwbd0z3az73l6yf1gjh"; depends=[]; }; Quartet = derive2 { name="Quartet"; version="1.2.5"; sha256="1chbn80y04hhcii1b58s7l1vak85ihdpl5q833mszrqili5zrmb1"; depends=[ape Rcpp Rdpack Ternary TreeTools viridisLite]; }; - QuasiSeq = derive2 { name="QuasiSeq"; version="1.0-11-0"; sha256="0lbzmd3mxjfcmvp3p3c8az2kp2fxrrv5mn28sqmsxwhvx3bd26rw"; depends=[edgeR mgcv pracma]; }; + QuickJSR = derive2 { name="QuickJSR"; version="1.0.4"; sha256="11fj3in9bzljj1jzz0y49yib1dcpbl8qr01sbqwa3wh4pq4c7mc0"; depends=[jsonlite R6 Rcpp]; }; QurvE = derive2 { name="QurvE"; version="1.0"; sha256="0zkacaraxnb8br5yympc9fpbfri9pxn5nnsii9nq91ryqyzz3bf9"; depends=[doParallel dplyr drc DT foreach ggh4x ggnewscale ggplot2 ggpubr kableExtra knitr labeling magrittr minpack_lm plyr RColorBrewer readxl rmarkdown scales shiny stringr tidyr]; }; R_SamBada = derive2 { name="R.SamBada"; version="0.1.3"; sha256="020f7fy0w6hy3gh5i8icny7gdgz6g29zr26b6pjglq0nsyxk8wc0"; depends=[gdsfmt SNPRelate]; }; R_cache = derive2 { name="R.cache"; version="0.16.0"; sha256="14cja0d78mzipb94cwgdl00k5r7awjclzxl30c77j6jpc68l0lvq"; depends=[digest R_methodsS3 R_oo R_utils]; }; @@ -3887,7 +3933,7 @@ in with self; { R0 = derive2 { name="R0"; version="1.2-10"; sha256="10ynx3qrw2nr5zd5zws9sbr5qabx6f9i7y7isi915hrqpfddf1pb"; depends=[MASS]; }; R1magic = derive2 { name="R1magic"; version="0.3.3"; sha256="0klfaab1abfq662p5c93h6y222nqphhq6m65hdjms04gl44bk3ww"; depends=[]; }; R2Addhaz = derive2 { name="R2Addhaz"; version="0.1.0"; sha256="1xaqbzq2chsgkg1gc163fq8qcgzq9wwn2bm4mwvc31ay0gg4f3xi"; depends=[ahaz caTools pracma Rdpack survival zoo]; }; - R2BEAT = derive2 { name="R2BEAT"; version="1.0.4"; sha256="048x0qvz2w58pby1pz4r1zdbq2v72mrrgaydva6ar0vjps0c2y5s"; depends=[devtools glue sampling]; }; + R2BEAT = derive2 { name="R2BEAT"; version="1.0.5"; sha256="02vxch3pszh3lv4z01da5g6d9zjnjv5cyxciiw4ina767lsk0rgk"; depends=[doParallel foreach glue sampling]; }; R2BayesX = derive2 { name="R2BayesX"; version="1.1-3"; sha256="1ijr83hi10yvpyy322nj9w3bm3vjfw6s74dmrz11dp5jdnyjm1x7"; depends=[BayesXsrc colorspace mgcv]; }; R2DT = derive2 { name="R2DT"; version="0.2"; sha256="0hyisq6mij80v14sjspn9idd1h38sd1knbpd0dn2wy9k2w1fl0pk"; depends=[data_table devFunc plyr]; }; R2HTML = derive2 { name="R2HTML"; version="2.3.3"; sha256="12qg9rp1j26h2f48dfg5k9jds26ycacv3f3ymk686ks43hd1hzja"; depends=[]; }; @@ -3907,12 +3953,12 @@ in with self; { R6P = derive2 { name="R6P"; version="0.3.0"; sha256="18qy69zwyzp27fiqlplcjh0034d2pn9dhnfkraarh4jxnbi7masm"; depends=[collections dplyr purrr R6 stringr tibble tidyr]; }; R6causal = derive2 { name="R6causal"; version="0.7.0"; sha256="17dfr8gl83qsarj538zd4010mhp5lzgd9awasq1x4yb4973q3sv1"; depends=[causaleffect data_table dosearch igraph R6]; }; RABR = derive2 { name="RABR"; version="0.1.1"; sha256="1ckh0cw5xaqbzx8f7i6lsbspblfm0mmmadaifmln2rz3vr0hf1f4"; depends=[asd cubature data_table doParallel foreach ggplot2 multcomp multxpert survival]; }; - RAC = derive2 { name="RAC"; version="1.5"; sha256="0q0kk9j3blrnhv0rfmryc35lli5j4kds2vmjdpg77znagb45609k"; depends=[maps maptools matrixStats ncdf4 plotrix raster rgdal rgeos rstudioapi sp]; }; + RAC = derive2 { name="RAC"; version="1.5.5"; sha256="0ar2vbckfr26slbibbbcx409c8mw338x4apmxs7by6prnlwr6fpx"; depends=[matrixStats plotrix raster rstudioapi sp]; }; RADanalysis = derive2 { name="RADanalysis"; version="0.5.5"; sha256="1py07p24i1pky8wwyy8ajmkg6h2n7nbpxp1w6lrkiyl0p2kgjm20"; depends=[scales sfsmisc]; }; RADstackshelpR = derive2 { name="RADstackshelpR"; version="0.1.0"; sha256="0j2vazbji8xqb8xkd9jrpi10iqj30rvkdjfs4snavl9nsbra99yf"; depends=[ggplot2 ggridges gridExtra vcfR]; }; RAINBOWR = derive2 { name="RAINBOWR"; version="0.1.29"; sha256="0g82wi0bffkkb86axsa814dbqhscs9mlgk43j3j375v9kbd4136c"; depends=[ape cluster expm gaston here htmlwidgets MASS Matrix MM4LMM optimx pbmcapply pegas Rcpp RcppEigen Rfast rrBLUP stringr]; }; RALSA = derive2 { name="RALSA"; version="1.3.0"; sha256="17pw312lhifkh1yz23cnxmazfm0slr2z54m64p2jfxzr9faiwbl0"; depends=[data_table DT foreign ggplot2 Hmisc openxlsx rclipboard readr shiny shinydashboard shinyFiles shinyjs stringi stringr]; }; - RAMClustR = derive2 { name="RAMClustR"; version="1.2.4"; sha256="11k106472wds10bvp7j2fr9vdzyvzfqndpvh2l5q5y9g25w0rpps"; depends=[dynamicTreeCut e1071 fastcluster ff ggplot2 gplots httr jsonlite pcaMethods preprocessCore RCurl readxl stringr webchem]; }; + RAMClustR = derive2 { name="RAMClustR"; version="1.3.0"; sha256="10l0gidlzalj1zx2wiiwg114hshqsx2639w29sks9g7w6dh20019"; depends=[dynamicTreeCut e1071 fastcluster ff ggplot2 gplots httr jsonlite pcaMethods preprocessCore stringr webchem]; }; RAMP = derive2 { name="RAMP"; version="2.0.2"; sha256="0836fiycrsxiwdw7srz1rvsf639iqh2rk89gavx4kvn0i0sc8d2x"; depends=[]; }; RAMpath = derive2 { name="RAMpath"; version="0.4"; sha256="0blixfmgiq22hd356hrp4vbhfkkgh0a58143nhirjx3sav9pxc1v"; depends=[ellipse lavaan MASS]; }; RANKS = derive2 { name="RANKS"; version="1.1"; sha256="1c7khw2rxf88cycy81kqxyg7rzb9f8ns8n5x24zzjdvsws77fshq"; depends=[graph limma NetPreProc PerfMeas RBGL]; }; @@ -3927,6 +3973,7 @@ in with self; { RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.2"; sha256="02k0l8bi849b2102ysb102xky4p84i9v2r4w6fab7bgf32wvph4w"; depends=[]; }; RAppArmor = derive2 { name="RAppArmor"; version="3.2.3"; sha256="04hxqwi75npayd3ghghswxc51k2xb525drixxk1fvp6hrhdkap5h"; depends=[unix]; }; RAthena = derive2 { name="RAthena"; version="2.6.1"; sha256="1zncmkx93c28z0xf4n5rdc7fzlrdqw3x9ab2ci07f00gjf9gwkf1"; depends=[data_table DBI reticulate uuid]; }; + RBE3 = derive2 { name="RBE3"; version="1.0"; sha256="1vkd06qzfbz3z3mq7sma05k81pz5xg2pw6s6z706b0g2jhqqnkh3"; depends=[gtools pracma]; }; RBF = derive2 { name="RBF"; version="2.1.0"; sha256="0062ckvrjfkkl5lfrshrr2cynrxsrp4zpdpl8nij06hm00i3gfs5"; depends=[]; }; RBNZ = derive2 { name="RBNZ"; version="1.1.0"; sha256="11fdnc2pmw5nq3lswid078l307ln6853a3b9d383msvrkz6yms26"; depends=[httr lubridate readxl rvest xml2]; }; RBPcurve = derive2 { name="RBPcurve"; version="1.2"; sha256="0zkfvnhm780vid4qqdrx9mnc6jxxrmrnq47pqvk35rm3m4l96782"; depends=[BBmisc checkmate mlr shape TeachingDemos]; }; @@ -3941,14 +3988,14 @@ in with self; { RCDT = derive2 { name="RCDT"; version="1.2.1"; sha256="0lp8d5h25kwp66849lwk1c1wc75wx7rrrvhiw42xcwxp66z2aycd"; depends=[BH gplots randomcoloR Rcpp RcppArmadillo rgl Rvcg]; }; RCEIM = derive2 { name="RCEIM"; version="0.3"; sha256="1kil5r88b6lf8vxmswz0wn0hhjxjm8jmlcl5kxjwl6fwjyy2z120"; depends=[]; }; RCGLS = derive2 { name="RCGLS"; version="1.0.3"; sha256="12mmfs91fmhdxdxr7q16hnjlg7bz2bbkf8chld4cyf8clnflzvsj"; depends=[ncdf4 raster RCurl sp]; }; - RCLabels = derive2 { name="RCLabels"; version="0.1.2"; sha256="1dq4nl78s2dci3nlx52jxg7qkcb1sy0nzws0qb6mpaf88zw63f5l"; depends=[assertthat Hmisc magrittr purrr]; }; + RCLabels = derive2 { name="RCLabels"; version="0.1.4"; sha256="13d2mr5zflcdlp7h1g05smg5aglk7kj8yr8a5gywp16zwq14i39h"; depends=[assertthat Hmisc magrittr purrr]; }; RCMinification = derive2 { name="RCMinification"; version="1.2"; sha256="1bdgc7rwkdkimp4k1p5ah26nbp1ic09kyyx6xily260xq7m31g1w"; depends=[KernSmooth locpol]; }; RCPA3 = derive2 { name="RCPA3"; version="1.1.1"; sha256="0zq700g7gwnf3rw0zd4m4h0rhp10d4ar5fdxwzbkn708c2m4znxg"; depends=[beepr car descr haven Hmisc knitr lmtest survey weights]; }; RCRnorm = derive2 { name="RCRnorm"; version="0.0.2"; sha256="1mz1jb7mc9c47hbk9flnddny4zir6r2k5qis30iynwqny521l6ln"; depends=[truncnorm]; }; RCSF = derive2 { name="RCSF"; version="1.0.2"; sha256="1hjl7qsdgcddn3nh2likndhfhnw9gj3453xqq96gddgb1y0m3bh1"; depends=[Rcpp]; }; RCT = derive2 { name="RCT"; version="1.1.2"; sha256="1cx39nnq50xjj5f1v8jvcia3j761qbi3w5gcyrax8daz7nlqsdxm"; depends=[broom dplyr forcats ggplot2 glue lfe magrittr MASS pracma purrr rlang stringr tidyr tidyselect]; }; RCT2 = derive2 { name="RCT2"; version="0.0.1"; sha256="1iwf4vp0wll1dgn0sxc3pycidhr6n52pmfmv85kyxkaz300ghhs7"; depends=[AER quadprog sandwich]; }; - RCTS = derive2 { name="RCTS"; version="0.2.3"; sha256="1g34fsgqw6fnqkqpj8g32yihnhdpcrx6g64b67zf83wkl1fqjn9l"; depends=[cellWise dplyr ggplot2 magrittr ncvreg purrr Rdpack rlang robustbase stringr tibble tidyr]; }; + RCTS = derive2 { name="RCTS"; version="0.2.4"; sha256="0wx0c9sk8y1frjwifgszzp38yx5lmwndhvixbak1kcjw5n02rkyj"; depends=[cellWise dplyr ggplot2 magrittr ncvreg purrr Rdpack rlang robustbase stringr tibble tidyr]; }; RCTrep = derive2 { name="RCTrep"; version="1.0.0"; sha256="0xjklda4z5gk44blxcyc97rlkq842b5lywz1k6ly24vw3fmv4hhs"; depends=[BART caret copula dplyr fastDummies geex ggplot2 ggpubr glue MASS MatchIt mvtnorm numDeriv optmatch PSweight R6 shiny shinydashboard tidyr]; }; RCarb = derive2 { name="RCarb"; version="0.1.6"; sha256="0p4g41jsyy0kq8v1pva5463cass2924j6i1l5r665pzxya1w5n8p"; depends=[interp matrixStats]; }; RChest = derive2 { name="RChest"; version="1.0.3"; sha256="112y6g1lyk3wky825g77sy49wgqs8vqdi90lrp0qza6cqjg381mq"; depends=[Rdpack reticulate]; }; @@ -3968,7 +4015,7 @@ in with self; { RDML = derive2 { name="RDML"; version="1.0"; sha256="13ly1p42njbcygwvkyii8sjqbsywjy5w5g1kd7m8kswi5dsk3qqv"; depends=[checkmate data_table lubridate pipeR R6 readxl rlist stringr xml2]; }; RDP = derive2 { name="RDP"; version="0.2.3"; sha256="0fmssv33lxfxk61609dd7865n9w7i6wlap9g5aaa2b0319sbclpd"; depends=[Rcpp]; }; RDS = derive2 { name="RDS"; version="0.9-6"; sha256="1pm9xy8jklb5l21g464z6310iin4v6hkkl42msl5xpicfvv0axd2"; depends=[anytime ergm ggplot2 gridExtra Hmisc igraph isotone network reshape2 scales statnet_common]; }; - RDSsamplesize = derive2 { name="RDSsamplesize"; version="0.2.0"; sha256="1k45j5zxcjkpqx5vchrv3v987zr80bkiwym6n79hq0isbrswnhcy"; depends=[Rcpp]; }; + RDSsamplesize = derive2 { name="RDSsamplesize"; version="0.3.0"; sha256="0rhgr3v6q4dws49qgkdwf69aa9glxkmjfxkimwjk1zz0pyx9m8hl"; depends=[Rcpp]; }; RDStreeboot = derive2 { name="RDStreeboot"; version="1.0"; sha256="10ry8rna450j389cplvyvgwljxa8lli7licwdin64b1kyzy2cdn7"; depends=[]; }; RDataCanvas = derive2 { name="RDataCanvas"; version="0.1"; sha256="1aw19lmdphxwva5cs3f4fb8hllirzfkk48nqdgrarz32l11y5z5j"; depends=[jsonlite]; }; RDieHarder = derive2 { name="RDieHarder"; version="0.2.5"; sha256="1djgy6al9f92i295bzc65lny7lz8gpk5js6hmfbflwfwcl9wg05b"; depends=[]; }; @@ -3989,6 +4036,7 @@ in with self; { REPPlabShiny = derive2 { name="REPPlabShiny"; version="0.4.1"; sha256="0wim27jm01xbi316jfz5j30sid7z1wsznhrpmxrbd97d4312449w"; depends=[DT REPPlab shiny]; }; REPTILE = derive2 { name="REPTILE"; version="1.0"; sha256="11swy4jrmmb0xjjxm1wyxd628fxxcqnialvijdrjwjpdbvraz4gq"; depends=[doParallel flux foreach optparse randomForest]; }; REQS = derive2 { name="REQS"; version="0.8-13"; sha256="1yzd37kqkg477p501l6s8iah9pkjsnsbxmk32w0rji7jpj7r2rs5"; depends=[gtools]; }; + RESET = derive2 { name="RESET"; version="0.1.0"; sha256="1sgmdimxx7d5y43yc296rik5l6274z2wxhx4pca1dhmpk9s2i27m"; depends=[Matrix]; }; RESI = derive2 { name="RESI"; version="1.1.1"; sha256="15li6pwrivmc4347md47f16vw5nx8zwgi3p9haj6ddhm36hpcjx6"; depends=[aod car clubSandwich lmtest nlme sandwich]; }; RESS = derive2 { name="RESS"; version="1.3"; sha256="1vddmifp47ia0sk35rnjpvw6gr9ygygafqczq268h17i1qs6ar22"; depends=[]; }; REdaS = derive2 { name="REdaS"; version="0.9.4"; sha256="1bi04zaqg4plp1byspn97lrlny47l521y1jhiixy093g6p6lqj11"; depends=[]; }; @@ -4004,7 +4052,8 @@ in with self; { RFormatter = derive2 { name="RFormatter"; version="0.1.1"; sha256="0jmzdc2cl4vvffsyfwp493fiygh9xinhv970qxp1667rw8wlap8l"; depends=[formatR]; }; RFpredInterval = derive2 { name="RFpredInterval"; version="1.0.7"; sha256="1r26pd6dxvkbx2aqcgb4rn9bdwnac3smw4wb1qr4pzzp9nw1ji4h"; depends=[data_table data_tree DiagrammeR hdrcde ranger]; }; RGAN = derive2 { name="RGAN"; version="0.1.1"; sha256="0820fvmiw853hfls7mydca9lhwxrrkj49vshp151by9mavwkx413"; depends=[cli torch viridis]; }; - RGCCA = derive2 { name="RGCCA"; version="2.1.2"; sha256="0zcxakqnmih0243y5b6r9nmcfanzxd6q344pd5bca5pnm3y43wr0"; depends=[Deriv MASS]; }; + RGBM = derive2 { name="RGBM"; version="1.0-11"; sha256="12pi503n767c707f4nqfn7zzvxb25kb6pks0257bcixwm37a6r54"; depends=[doParallel foreach plyr]; }; + RGCCA = derive2 { name="RGCCA"; version="3.0.1"; sha256="1idvy50zjz5kn657klqbfq9a3jwfvp0f8p8dpyjyykfmp1rb99vd"; depends=[caret Deriv ggplot2 ggrepel gridExtra MASS matrixStats pbapply rlang]; }; RGCxGC = derive2 { name="RGCxGC"; version="1.2.0"; sha256="1hz363pqlx0l3wi4di69fmrv4awl37lz8fzl4g070zchwzbffcpc"; depends=[colorRamps ptw Rdpack RNetCDF]; }; RGE = derive2 { name="RGE"; version="1.0"; sha256="1ild1if10xicfapfcmydz1cgvn5fyydrik8qclb90i95bl9bs4ia"; depends=[coda Matrix MatrixModels]; }; RGENERATE = derive2 { name="RGENERATE"; version="1.3.7"; sha256="0w6hqrf2lr6qz79skml2vjpfwfv5vxj94rghxxa3rp9dqzhi7rc0"; depends=[magrittr RMAWGEN]; }; @@ -4031,7 +4080,7 @@ in with self; { RHclust = derive2 { name="RHclust"; version="1.1.0"; sha256="1i28bxkgdxlc216vsgambzc027wjnw0iaibry6m1vz9as2yy1fry"; depends=[Runuran]; }; RHybridFinder = derive2 { name="RHybridFinder"; version="0.2.0"; sha256="0g8kvzir8kfgg3ifww164lbqhsi2yw3dp80r68g36vxfzy11y230"; depends=[doParallel foreach seqinr]; }; RI2by2 = derive2 { name="RI2by2"; version="1.3"; sha256="0smc0fb9anq5ih9zx2slfbqyx02njm0hc7g22gpfggskmxf2l509"; depends=[gtools Rcpp]; }; - RIA = derive2 { name="RIA"; version="1.6.1"; sha256="1pjndiww9k8bfz05qfvmk4frg9qf2cz8cn1jk8bdv27bv9acxw1k"; depends=[nat oro_dicom oro_nifti reticulate]; }; + RIA = derive2 { name="RIA"; version="1.7.1"; sha256="0q36xaikj4c208hk48zdlpgx0hfvc5dpwckr0ksk217n0h5hfk1x"; depends=[oro_dicom oro_nifti]; }; RIFS = derive2 { name="RIFS"; version="0.1.6"; sha256="0cbz2vg8adqjkbn9r8cikqxlzhk01ba3nlnh8rqbwdcpiz90l1ip"; depends=[]; }; RISCA = derive2 { name="RISCA"; version="1.0.4"; sha256="1mhydhr6a0wywr0pml7jw0sra2iavzbkxm3gs0w9p53ssdipnw49"; depends=[caret cubature date doParallel flexsurv foreach glmnet glmnetUtils hdnom kernlab MASS mosaic mosaicCalc mvtnorm nlme nnet prodlim randomForestSRC relsurv reticulate rpart statmod SuperLearner survival survivalmodels timeROC tune]; }; RISmed = derive2 { name="RISmed"; version="2.3.0"; sha256="0vpi88gzi9r85v6nhjz9jbw671zkrmyazwna2z881346wfyr3l8b"; depends=[httr xml2]; }; @@ -4044,7 +4093,7 @@ in with self; { RInside = derive2 { name="RInside"; version="0.2.18"; sha256="0dmpdi39dv5a0i7v507cbm2vr2d0cl310n9w1qz66r53y3q18l40"; depends=[Rcpp]; }; RItools = derive2 { name="RItools"; version="0.3-3"; sha256="1m9isda5alzycill707r2ayz9mcdsyhxnpy6i6nmzgrsxb9f421a"; depends=[abind dplyr ggplot2 SparseM survival svd tibble tidyr xtable]; }; RJDBC = derive2 { name="RJDBC"; version="0.2-10"; sha256="06b2gw76jwmm3lw3knmn6slc6824d4gzry94n96d97ii4fm4gwrp"; depends=[DBI rJava]; }; - RJDemetra = derive2 { name="RJDemetra"; version="0.2.1"; sha256="1g54kzfb97zba5898bz90cba5nyjkhd00hw3azsaic6xa7dwz5gr"; depends=[rJava]; }; + RJDemetra = derive2 { name="RJDemetra"; version="0.2.2"; sha256="0b7n8s2dizsrbia89wsxdycr30dm0xb9z4h2hk67m5kbr4mcgqkc"; depends=[rJava]; }; RJSDMX = derive2 { name="RJSDMX"; version="3.0-6"; sha256="036ixsa2vymlmq3wb9yaclwkql30jgrycmfq8k0n6gxl309x5z2y"; depends=[rJava zoo]; }; RJSONIO = derive2 { name="RJSONIO"; version="1.3-1.8"; sha256="1xak6n15ck7rj9swxk99vpjly1naxgz9gj6zjmib2lkq7inmgw7n"; depends=[]; }; RJSplot = derive2 { name="RJSplot"; version="2.7"; sha256="02q5isc137nx7qil2p3903xfsjwk54507rs72dfaiy6a8scys5j9"; depends=[]; }; @@ -4058,9 +4107,9 @@ in with self; { RKHSMetaMod = derive2 { name="RKHSMetaMod"; version="1.1"; sha256="1h8gqqfmlrzyj4n997yn13vqpaw2kwzl45gscy3fdhskzmyg0ss3"; depends=[Rcpp RcppEigen RcppGSL]; }; RKUM = derive2 { name="RKUM"; version="0.1.1.1"; sha256="0w26ybl8jp5b90lfxj4710bkhb6qchnsg6smvwrry2225x3kfk7v"; depends=[]; }; RKelly = derive2 { name="RKelly"; version="1.0"; sha256="0mkpc95j67rg2gcj2fc4w8kv4v31cpiyvh660y8kc2fjr5q4aj3l"; depends=[]; }; - RKorAPClient = derive2 { name="RKorAPClient"; version="0.7.5"; sha256="0kdrv9y7zahcfsmrfnc8bxhln99girxv68jhjq164qwibvnzvsfk"; depends=[broom curl dplyr ggplot2 highcharter httr jsonlite keyring lubridate magrittr PTXQC purrr R_cache stringr tibble tidyr urltools]; }; + RKorAPClient = derive2 { name="RKorAPClient"; version="0.7.6"; sha256="1xvrgq07nrdi3jls6nf47af7cvln46vrhc234yn3clkzjn6nh6f5"; depends=[broom curl dplyr ggplot2 highcharter httr jsonlite keyring lubridate magrittr PTXQC purrr R_cache stringr tibble tidyr urltools]; }; RLRsim = derive2 { name="RLRsim"; version="3.1-8"; sha256="06i4slc7fj8xifq20i1vqfadfw2p81b0kfzga60139hnryz1zpva"; depends=[lme4 mgcv nlme Rcpp]; }; - RLT = derive2 { name="RLT"; version="3.2.5"; sha256="1zqlk6pbbp4as3bkgjvhk9kq9jw0295apdbv5cgsjgmgirgiz5vk"; depends=[]; }; + RLT = derive2 { name="RLT"; version="3.2.6"; sha256="0s2bb8cdvc5ab2n5xxi76c5szgizwbcy21z6762hpqms4g2yhvc6"; depends=[]; }; RLeafAngle = derive2 { name="RLeafAngle"; version="1.0"; sha256="1anks22hn6qpac556p99kilkhc80h572dvcyz3wj1nqffdrhgrh3"; depends=[]; }; RLogicalOps = derive2 { name="RLogicalOps"; version="0.1"; sha256="1qyn80x3x3bb5wgzyzw6pxs8a6q26yq1fkmkz7f5wywsnrj8hzfj"; depends=[rstackdeque stringr]; }; RLumCarlo = derive2 { name="RLumCarlo"; version="0.1.9"; sha256="1a57nrhnq2q68yi0djh40kk1ms075kpwnmiq33vvy5pl57axnqpr"; depends=[abind doParallel foreach khroma magrittr Rcpp RcppArmadillo scatterplot3d]; }; @@ -4089,9 +4138,10 @@ in with self; { RMallow = derive2 { name="RMallow"; version="1.1"; sha256="1s6a3347739rfc8rrh2773b278gcbp8hf5j5psm61fz7bavy9gcj"; depends=[combinat]; }; RMariaDB = derive2 { name="RMariaDB"; version="1.2.2"; sha256="13j6bx3h2fjng4lym65w2anyq3kfamkg7qyk56csvyc4wnn62z69"; depends=[bit64 blob DBI hms lubridate plogr Rcpp rlang]; }; RMark = derive2 { name="RMark"; version="3.0.0"; sha256="0nrh55rmfkrncpc58hranjww37dp8qrngkcazs5nmznw8r10z8h8"; depends=[coda matrixcalc msm]; }; + RMediation = derive2 { name="RMediation"; version="1.2.2"; sha256="16zw8ic8h2q1qg627ddaxmr9dvj7ckdljbzfgwq557nxc2fgk1v2"; depends=[doParallel e1071 foreach iterators lavaan MASS modelr OpenMx stringr]; }; RMixpanel = derive2 { name="RMixpanel"; version="0.7-1"; sha256="1xwmmfvky49n1l0w3kwcyaf2h4rhzz4k5icjwvpc90fqk8sxib6a"; depends=[base64enc jsonlite RCurl uuid]; }; RMixtComp = derive2 { name="RMixtComp"; version="4.1.3"; sha256="0v1qhqvl0s2b93xhykjr99h5gbz48l9npp0vyazh0ncx8gnxrzfl"; depends=[ggplot2 plotly RMixtCompIO RMixtCompUtilities scales]; }; - RMixtCompIO = derive2 { name="RMixtCompIO"; version="4.0.9"; sha256="0295p68k87wdgxsiz71y3n1980dmd79j739vs5nai1i34sgk6p2z"; depends=[BH doParallel foreach Rcpp RcppEigen]; }; + RMixtCompIO = derive2 { name="RMixtCompIO"; version="4.0.10"; sha256="1hrhysdz6j487masw116yibg86gcvwfb5rdzfhi6cq4xqj9svngm"; depends=[BH doParallel foreach Rcpp RcppEigen]; }; RMixtCompUtilities = derive2 { name="RMixtCompUtilities"; version="4.1.4"; sha256="1rhdmiap7xm96igclas67dz8naywjkddydbk9m3hp0d0zhgblc5i"; depends=[ggplot2 plotly scales]; }; RMySQL = derive2 { name="RMySQL"; version="0.10.25"; sha256="1527ba5vqg4ss6rqxrkxa1a66r1m9h4zmdnv9xdzva8fv2dhy4zd"; depends=[DBI]; }; RNAseqNet = derive2 { name="RNAseqNet"; version="0.1.4"; sha256="16ab0p0378j4vvcazynffsgx1rq32llf1sz4h4pp5lrx820j6qvx"; depends=[ggplot2 glmnet hot_deck igraph PoiClaClu]; }; @@ -4108,8 +4158,8 @@ in with self; { RNentropy = derive2 { name="RNentropy"; version="1.2.3"; sha256="1kflx1i01ddq803i0vj79zfjs9y0sl8dzra9j5x84m6wcjbn71kl"; depends=[]; }; RNetCDF = derive2 { name="RNetCDF"; version="2.6-2"; sha256="0bh2xikck4jgrakxpz4ibi7nma1ib4nwayqq4cgh5wy5ixwlbpml"; depends=[]; }; RNetLogo = derive2 { name="RNetLogo"; version="1.0-4"; sha256="1z7jp454k197c0zbkn64zmf25wadkiznv3w2csgiz917cbx6xcn1"; depends=[igraph rJava]; }; - RNewsflow = derive2 { name="RNewsflow"; version="1.2.6"; sha256="06hz5fim5ad8kbpc4crs9vdn7k9q5phhzscd46s4xk0b3n0i8wi1"; depends=[data_table igraph Matrix quanteda Rcpp RcppEigen RcppProgress scales stringi tm wordcloud]; }; - RNifti = derive2 { name="RNifti"; version="1.4.5"; sha256="0a26jdhgwnfk2ai4zrnqf65czmamqrj2gb6l9w83mfpyrm4shxx2"; depends=[Rcpp]; }; + RNewsflow = derive2 { name="RNewsflow"; version="1.2.7"; sha256="08jyj57y20a156dhpwn83v27lgc57yv189qrlsy5qn48jzfdb77h"; depends=[data_table igraph Matrix quanteda Rcpp RcppEigen RcppProgress scales stringi wordcloud]; }; + RNifti = derive2 { name="RNifti"; version="1.5.0"; sha256="01g9ylmjirmblgcl1f8kzwfzbpyf4vy2rci1407jx4s3av9xzr1j"; depends=[Rcpp]; }; RNiftyReg = derive2 { name="RNiftyReg"; version="2.7.1"; sha256="1hmcd89c1qw6zyhshz1myyf2xjwhz5gl3hr46nny5qgh3z4ylyb1"; depends=[ore Rcpp RcppEigen RNifti]; }; ROAuth = derive2 { name="ROAuth"; version="0.9.6"; sha256="0vhsp8qybrl94898m2znqs7hmlnlbsh8sm0q093dwdb2lzrqww4m"; depends=[digest RCurl]; }; ROCFTP_MMS = derive2 { name="ROCFTP.MMS"; version="1.0.0"; sha256="022cz5vh79c50r31rxn5fjghl65wn1ns8xdgq3b05hjf9psjvg4x"; depends=[vctrs]; }; @@ -4123,11 +4173,12 @@ in with self; { ROCpsych = derive2 { name="ROCpsych"; version="1.3"; sha256="0fcrhhxmvrrchbswb94liahbgz5pfhs86fbj0vby7vnakrhngh7v"; depends=[pROC reportROC]; }; RODBC = derive2 { name="RODBC"; version="1.3-20"; sha256="1mpv2315jbbg085wbrgzvlk11apkn32slq3j4jjbw0i5rb8pn5bz"; depends=[]; }; RODBCDBI = derive2 { name="RODBCDBI"; version="0.1.1"; sha256="0jkcc1lm8drsx1pkfj5h6rlbr98cgpvbf9ndzdwr048f3s8gd26i"; depends=[DBI RODBC]; }; - ROI = derive2 { name="ROI"; version="1.0-0"; sha256="0hd3l219wanhanbf4pgrh1pbxah50gf5qg2gff1djdr1xns7zn5h"; depends=[registry slam]; }; + ROI = derive2 { name="ROI"; version="1.0-1"; sha256="05hnj9fskfm2klz7zv97lb0r60akjq4a1cay8p62whpi0hri9zyl"; depends=[checkmate registry slam]; }; ROI_models_globalOptTests = derive2 { name="ROI.models.globalOptTests"; version="1.1-1"; sha256="1zj636cmjhhqbn6hh6760bi5y8lf6y7qqkz72yijq7dj2y1za2ph"; depends=[globalOptTests ROI]; }; ROI_models_miplib = derive2 { name="ROI.models.miplib"; version="1.0-0"; sha256="12yxra45s9f14dn12wibxrz598g3s39lm3af4dxmw9jnlfb8z84b"; depends=[R_utils Rglpk ROI]; }; - ROI_models_netlib = derive2 { name="ROI.models.netlib"; version="1.1-1"; sha256="1h59i7mc21kgwi4mz0qpfj855bp6d2qkrp40lm02dqhf79sps26k"; depends=[ROI]; }; + ROI_models_netlib = derive2 { name="ROI.models.netlib"; version="1.1-2"; sha256="1ip6xb9nvqs3dj2rnylhjwmql1wwdhhnvnp1gi86d22qjixnn8h3"; depends=[ROI]; }; ROI_plugin_alabama = derive2 { name="ROI.plugin.alabama"; version="1.0-0"; sha256="1h4154w730y06zak0s199lafwnip4xqnnh33ghkyg39y71sn9nfz"; depends=[alabama ROI]; }; + ROI_plugin_clarabel = derive2 { name="ROI.plugin.clarabel"; version="0.1"; sha256="0r90h62f7hll0n9nv376caj1wy34m7pjcg0r3gfa30mmql2aznyp"; depends=[clarabel ROI slam]; }; ROI_plugin_cplex = derive2 { name="ROI.plugin.cplex"; version="0.3-0"; sha256="1ipwvclrxws7nvirvns58gpakg23ldiphyl6g0akxk5hczr0lazf"; depends=[Rcplex ROI slam]; }; ROI_plugin_deoptim = derive2 { name="ROI.plugin.deoptim"; version="1.0-0"; sha256="1v093r6d14w12p2lmzcnlja9q5lhfvrmfbd3ws7x4igs0fmcdq2y"; depends=[DEoptim DEoptimR ROI]; }; ROI_plugin_ecos = derive2 { name="ROI.plugin.ecos"; version="1.0-0"; sha256="0wdb86r0z0ck27mn0rfb5l72xq7km2annyk5c5n8nk460j0kygqf"; depends=[ECOSolveR Matrix ROI slam]; }; @@ -4172,7 +4223,7 @@ in with self; { RPhosFate = derive2 { name="RPhosFate"; version="1.0.3"; sha256="1lm6ksla6szm4p6vrsjlr6m4ldq44m5s5sbbl2wsj3jsvrrg7cyq"; depends=[checkmate hydroGOF raster Rcpp RcppArmadillo spatstat_geom yaml]; }; RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.7-5"; sha256="18czy93l9dg321pbvrfmlwrjahpbkiw0sll4pkkqm55xapp02m3b"; depends=[DBI]; }; RPostgres = derive2 { name="RPostgres"; version="1.4.5"; sha256="15y732ylnq1h1hw16nh1ichnygh3l76h23m2893avpaipa689zvh"; depends=[bit64 blob DBI hms lubridate plogr Rcpp withr]; }; - RPresto = derive2 { name="RPresto"; version="1.4.4"; sha256="18g0617sfjki0w8plnf107wbfps4fmcm9j0i9cdv3a41rzjrm2xx"; depends=[bit64 DBI dbplyr dplyr httr jsonlite lifecycle lubridate openssl progress purrr rlang stringi tibble]; }; + RPresto = derive2 { name="RPresto"; version="1.4.5"; sha256="1yf5kbmc73ff2kl9s6jmdrpkc7i4118n0wnpdfpz1p4qkm8s4pas"; depends=[bit64 DBI dbplyr dplyr httr jsonlite lifecycle lubridate openssl progress purrr rlang stringi tibble]; }; RProbSup = derive2 { name="RProbSup"; version="3.0"; sha256="1z53zgx26fwfhb1vxad0l51v34y2lsplhwbjaf4r44rngdaw9h5n"; depends=[]; }; RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.20"; sha256="1q5wd586334472584r93whnwxy4yyycn9l891g6m6wh7v0884q76"; depends=[Rcpp]; }; RPscoring = derive2 { name="RPscoring"; version="0.1.0"; sha256="063w83k9krwv3wvw2iq8bqkhjaj26as14d9g99l8jxfc02ljv1rr"; depends=[]; }; @@ -4181,7 +4232,7 @@ in with self; { RPushbullet = derive2 { name="RPushbullet"; version="0.3.4"; sha256="1mx433hvx660a63s5dzn655zmqv1c1qij0hzddl9z38032brc4ii"; depends=[curl jsonlite]; }; RPyGeo = derive2 { name="RPyGeo"; version="1.0.0"; sha256="1alqgx6blqqwxm76w05g82kc2icx8nvjw7qkdz73gf9ckgza5bb3"; depends=[magrittr purrr raster reticulate rmarkdown sf stringr]; }; RQEntangle = derive2 { name="RQEntangle"; version="0.1.3"; sha256="178haddk8nnscy2vym3k2a3ca9lf6nl7rpjja8lxqdjninvhvwb2"; depends=[iterators itertools]; }; - RQuantLib = derive2 { name="RQuantLib"; version="0.4.17"; sha256="1sb6mpglqzwnf868gg7g6ys3l7z960721xj28y0v2pfc8vfk5ic2"; depends=[Rcpp zoo]; }; + RQuantLib = derive2 { name="RQuantLib"; version="0.4.18"; sha256="0ninb84isvv10dxh1ga5vs0q2hny37b4a9snzdijn63hl3rgw97i"; depends=[Rcpp zoo]; }; RRBoost = derive2 { name="RRBoost"; version="0.1"; sha256="0zp3csrpi0awk88m6sq5sf5v7j32q5sd4mwv61x6bblg991k404k"; depends=[RobStatTM rpart]; }; RRF = derive2 { name="RRF"; version="1.9.4"; sha256="1kdyw0v1m3ajf88gzs70p6l6pic4g46ccwqxi9iznimayby6ygjb"; depends=[]; }; RRI = derive2 { name="RRI"; version="1.1"; sha256="0msdc5j5vx4snl8r3q5nn0mw2i80jds5pjykhmigcrx6jzg6h6i7"; depends=[Rcpp RcppArmadillo]; }; @@ -4199,16 +4250,16 @@ in with self; { RSAGA = derive2 { name="RSAGA"; version="1.4.0"; sha256="0mdirx7d3z4l0k54wa6rb1c5gma470ypifd3flj2287m8y2wjqq5"; depends=[gstat magrittr plyr shapefiles stringr]; }; RSAlgaeR = derive2 { name="RSAlgaeR"; version="1.0.0"; sha256="1hp0v2vkj9ixiv541d53kyl0ph3jsdc5w98r81gv5ck5ixrp6bxp"; depends=[cvTools ggplot2 hydroGOF lubridate mblm plyr]; }; RSBJson = derive2 { name="RSBJson"; version="1.1.2"; sha256="1bzy0pgj6kg447xnnjj643hk8gyzzaaliiw0z98r19959bqbvgq3"; depends=[jsonlite]; }; - RSC = derive2 { name="RSC"; version="2.0.2"; sha256="0d7b8q5r3sb29h3kj0dpd1ldm6lymqkpdjsg216m4lgqcikkng6l"; depends=[doParallel foreach Matrix]; }; + RSC = derive2 { name="RSC"; version="2.0.4"; sha256="106pvrg10f8w0aqbnahqjdii49ijp2659l7kkj5y46pbr90lbpzs"; depends=[doParallel foreach Matrix]; }; RSCAT = derive2 { name="RSCAT"; version="1.1.3"; sha256="08p4gywh1g13mwcmvp046ybz410jyrzi505rdqr8yirjpk59bw1p"; depends=[ggplot2 gridExtra Metrics rJava shiny shinycssloaders shinyjs]; }; - RSDA = derive2 { name="RSDA"; version="3.0.13"; sha256="0w9ynkdsikm95w0w2yrmv0ak25iz4kmgnxb5x823jif5bdwldgx9"; depends=[dplyr e1071 FactoMineR forcats gbm ggplot2 ggpolypath glmnet kknn magrittr neuralnet nloptr princurve purrr randomcoloR randomForest reshape RJSONIO rlang rpart scales sqldf stringr tibble tidyselect tsne umap vctrs XML]; }; + RSDA = derive2 { name="RSDA"; version="3.1.0"; sha256="0xps9ivqgh64z26gbnsqr6cqr8q5ddc2dkfgl3bk6yrrlwp5fl0n"; depends=[dplyr e1071 FactoMineR forcats gbm ggplot2 ggpolypath glmnet kknn magrittr neuralnet nloptr princurve purrr randomcoloR randomForest reshape RJSONIO rlang rpart scales sqldf stringr tibble tidyselect umap vctrs XML]; }; RSDK = derive2 { name="RSDK"; version="1.0.1"; sha256="1qsidmcb432aliwvcn3y14w538nnac1xp50z7a4vh68kqidwhrxp"; depends=[keys shiny shinyWidgets testthat]; }; RSE = derive2 { name="RSE"; version="1.3"; sha256="1dvmj1zwkbp1dj9r8kcvbd8rpknfwfdqaqc5gfl82bh823w72099"; depends=[]; }; RSEIS = derive2 { name="RSEIS"; version="4.1-4"; sha256="0xpzvcw2blh3zzp7lacrq3zh7hx44d06ksi71nl1z1yk1krwmmbn"; depends=[RPMG Rwave]; }; RSGHB = derive2 { name="RSGHB"; version="1.2.2"; sha256="16s9iahbcdqykavm5cq8n76hlpfqlljl17xwh0vrz5ac7z4z3rdz"; depends=[MCMCpack]; }; RSIP = derive2 { name="RSIP"; version="1.0.0"; sha256="1yddqbnz0av69l53y83m7rnznc42qz66fc3qrispzaajs7p9n8d7"; depends=[ncdf4 raster rasterVis rgdal sp]; }; RSKC = derive2 { name="RSKC"; version="2.4.2"; sha256="0r9gpwhzscb6rbba3dg13p78pvskahgvsd59biag0shyii3xvwpm"; depends=[flexclust]; }; - RSNNS = derive2 { name="RSNNS"; version="0.4-15"; sha256="1cy15qhs8ndfld80bvpjvn7kri561wjlk2sb56v8zcjh9x28chja"; depends=[Rcpp]; }; + RSNNS = derive2 { name="RSNNS"; version="0.4-16"; sha256="1n1jl99n59m5zg6qbd8c679qkw3nzxnyda917kmr97m30kdmy88s"; depends=[Rcpp]; }; RSP = derive2 { name="RSP"; version="0.1"; sha256="10qldl1sjf812aqakwa5y7i9kd9vahck69fc37m37i408ncyw933"; depends=[catR DT foreign GPArotation gt hornpa igraph lavaan Metrics mirt MVN plyr polycor psych rJava rstudioapi semPlot shiny shinyBS shinycustomloader ShinyItemAnalysis shinyjs shinythemes xlsx]; }; RSQL = derive2 { name="RSQL"; version="0.2.1"; sha256="10s71kgsa37m937lr7kai8c73iw5fwb9rnhkf65wz0w2qha01zaz"; depends=[DBI lgr R6]; }; RSQLite = derive2 { name="RSQLite"; version="2.3.1"; sha256="1jil3wgfh1asfb9c4cr9qyr74wb9f87r7sa03kj187201hb3xlly"; depends=[bit64 blob cpp11 DBI memoise pkgconfig plogr]; }; @@ -4238,8 +4289,11 @@ in with self; { RTCC = derive2 { name="RTCC"; version="0.1.1"; sha256="0bnm0qwikbbpq3i5q5fwmsgi8fn7w0xk993ngpiqbrf5my3h93kc"; depends=[matrixStats Rcpp testthat vegan]; }; RTD = derive2 { name="RTD"; version="0.4.1"; sha256="0zsv62hx1y9q5a6rd8ri91ff64671b84jr3f88h0q4yni2mribhr"; depends=[dplyr httr jsonlite purrr RcppMsgPack readr urltools uuid]; }; RTDE = derive2 { name="RTDE"; version="0.2-1"; sha256="1dkv0g760384jmyypffl5kbnsancjx272j91ffpgmg3lmsy8nhqq"; depends=[]; }; + RTFA = derive2 { name="RTFA"; version="0.1.0"; sha256="09vpyxqmzvkmznwgrm5d1y1rk7j5a2hnjmkczzg0bzij1c8bqkhn"; depends=[rTensor tensor]; }; RTIGER = derive2 { name="RTIGER"; version="2.1.0"; sha256="08gs26wv6jnd4rzdhb87as26aslgqs128x1ip8h9nmr3l9mwg5fq"; depends=[e1071 extraDistr GenomeInfoDb GenomicRanges ggplot2 IRanges JuliaCall qpdf reshape2 TailRank]; }; + RTL = derive2 { name="RTL"; version="1.3.3"; sha256="123xl52n8vm22qnf4h0dsyjhq1pwvjvf17vx2qk1x1mi1csbihcz"; depends=[dplyr ggplot2 glue httr jsonlite lifecycle lubridate magrittr PerformanceAnalytics plotly purrr Rcpp RCurl readr rlang stringr tibble tidyr tidyselect timetk tsibble TTR xts zoo]; }; RTOMO = derive2 { name="RTOMO"; version="1.1-6"; sha256="03jb96ahzgp662vj2v65giv8ss61vad5w26kvq8hg9q06z879jza"; depends=[GEOmap RPMG RSEIS splancs]; }; + RTSA = derive2 { name="RTSA"; version="0.1.0"; sha256="1dzfqhv9w7digh7fz93xknn70mjg235dwqh93pxn4n4sxxx2740y"; depends=[ggplot2 metafor Rcpp scales]; }; RTTWebClient = derive2 { name="RTTWebClient"; version="0.1.3"; sha256="1d4dmw7z90nih9bzajlyqgqvpfmpkxwyhw0w56q396kvw8k644cp"; depends=[base64enc data_table digest httr jsonlite withr]; }; RTaxometrics = derive2 { name="RTaxometrics"; version="3.2"; sha256="0nrj5iccxqj3nk28s9z6bncpih5zq2nz4pylmm0pkpl5dfz923m4"; depends=[]; }; RTextTools = derive2 { name="RTextTools"; version="1.4.3"; sha256="0fxjviqc36k06rn8xzbi8ylzzj9zgf3zsp6xv0kssakss1a45lzz"; depends=[caTools e1071 glmnet ipred nnet randomForest SparseM tau tm tree]; }; @@ -4248,9 +4302,9 @@ in with self; { RUVIIIC = derive2 { name="RUVIIIC"; version="1.0.19"; sha256="1px87p4nmdgkxwarsqyc91kmwr13dy16c1qqqc86qlwm2w46smf6"; depends=[progress Rcpp RcppEigen RcppProgress RSpectra]; }; RUnit = derive2 { name="RUnit"; version="0.4.32"; sha256="1wc1gwb7yw7phf8b0gkig6c23klya3ax11c6i4s0f049k42r78r3"; depends=[]; }; RVA = derive2 { name="RVA"; version="0.0.5"; sha256="1a0av2vhqnkc4w76q5dhds0p12icmkkxyr1d04rsd83srwkwh4fb"; depends=[circlize clusterProfiler ComplexHeatmap data_table dplyr edgeR ggplot2 ggpubr gridExtra GSEABase GSVAdata haven msigdbr org_Hs_eg_db plotly purrr rlang rWikiPathways stringr tibble tidyr XML]; }; - RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-81-2"; sha256="137374nikk2jji1fnx1vnsj1v6n3s9kbif5rcvla0kbg3xn6ndps"; depends=[ade4 boot car FactoMineR lme4 MASS mixOmics nnet pls pspearman vegan]; }; - RVCompare = derive2 { name="RVCompare"; version="0.1.6"; sha256="05pjqimgiqdskf3f60k5q3fd16f16a630rl1xs08y7qbc56rvrw8"; depends=[ggplot2 pracma Rcpp]; }; - RVIpkg = derive2 { name="RVIpkg"; version="0.3.1"; sha256="1zczdrja65i4rkfld28pf6k3skm0vmsc46lvc5ahj8q1fcacpmrd"; depends=[]; }; + RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-82-2"; sha256="0l144a1razkdq7kbxrkc3hc01wwqw7c18kz85g0sw356gmjap86x"; depends=[ade4 boot car FactoMineR lme4 MASS mixOmics nnet pls pspearman vegan]; }; + RVCompare = derive2 { name="RVCompare"; version="0.1.7"; sha256="17xidcn2p27ms4ssl9312i1pbv4dc4873096a7rv5b8ygkgnarrm"; depends=[ggplot2 pracma Rcpp]; }; + RVIpkg = derive2 { name="RVIpkg"; version="0.3.2"; sha256="0s3fjagbd24cgymsfsjd0940kzyvla2cybsr0387q7l93lfr3rmd"; depends=[]; }; RVenn = derive2 { name="RVenn"; version="1.1.0"; sha256="016m00xv59lkwm2is32v5nr4lw5a1ymdnz34r3ffflcv9bfrc6n4"; depends=[ggforce ggplot2 magrittr pheatmap purrr rlang vegan]; }; RVerbalExpressions = derive2 { name="RVerbalExpressions"; version="0.1.0"; sha256="1p9wmpgqwnz95sr8km8y6kqax8fcz6sqg54wfdx44kiqkf1ybdsp"; depends=[magrittr]; }; RViennaCL = derive2 { name="RViennaCL"; version="1.7.1.8"; sha256="0lh23g8zyd50p6hnl4dfmzrsg48y74g2h7dism9j2n1pfd9p9k5d"; depends=[]; }; @@ -4271,7 +4325,6 @@ in with self; { RZooRoH = derive2 { name="RZooRoH"; version="0.3.1"; sha256="090mcy6czipvidprj87vyfb2wdipy08xjn130qzs5qdq9bnb6a14"; depends=[data_table doParallel foreach iterators RColorBrewer]; }; RaJIVE = derive2 { name="RaJIVE"; version="1.0"; sha256="1r3csf3xpk6rx494bqamb9b8dhj1169cng6gdi52h62m8vchnak5"; depends=[doParallel foreach ggplot2]; }; RaMS = derive2 { name="RaMS"; version="1.3.1"; sha256="1njlgzrsxaawic60v7yk80qrhq73cia8miiafsvfxf9gcldr5alp"; depends=[base64enc data_table xml2]; }; - RaProR = derive2 { name="RaProR"; version="1.1-5"; sha256="11hwg609pjcd13qnbchbs86c3q8f4nmh1xfxg3dsiijljl6lzx3n"; depends=[]; }; RaSEn = derive2 { name="RaSEn"; version="3.0.0"; sha256="1a7jvyvvhzn4aifnhjldn5jr6sxh16b67x335p8wh8g24yvvglvw"; depends=[caret class doParallel e1071 FNN foreach formatR ggplot2 glmnet gridExtra KernelKnn MASS ModelMetrics nnet randomForest ranger rpart]; }; RaceID = derive2 { name="RaceID"; version="0.3.0"; sha256="1171wqx2h9gx6iszw4lr24ch7sdcb2f9bk410v2x7pc4qkqd1fa1"; depends=[cluster coop FateID FNN fpc ggplot2 harmony ica igraph irlba leiden locfit MASS Matrix matrixStats pheatmap princurve quadprog randomForest RColorBrewer Rcpp Rtsne runner umap vegan]; }; RadData = derive2 { name="RadData"; version="1.0.1"; sha256="053i6r0j58dws1qisl2701n0fwzrfn5brdx3dcab8xmpzg6s0036"; depends=[]; }; @@ -4280,7 +4333,7 @@ in with self; { RadioSonde = derive2 { name="RadioSonde"; version="4.2"; sha256="02ncpyvjxvk192bdaqqmqpr9bfwwli0qp58fxghaf3x0qimd3d1c"; depends=[fields]; }; Radviz = derive2 { name="Radviz"; version="0.9.3"; sha256="0ayrkax1g7x9jvkl8lni08ydm1lhcwpcbvy1xj9zk3bpd5zpll86"; depends=[dplyr ggplot2 hexbin igraph pracma Rcpp RcppArmadillo rlang]; }; RagGrid = derive2 { name="RagGrid"; version="0.2.0"; sha256="0crnpd75lyhd0awzqzqy7bzw4ydgxpyhy1ybb1ff4qsnisbjdbba"; depends=[crosstalk htmltools htmlwidgets knitr]; }; - Rage = derive2 { name="Rage"; version="1.3.0"; sha256="1bn0l0fvd5kgd4vq3nzfb2v7zaff33iy6xdmx6q421vk9gx3jwdq"; depends=[DiagrammeR MASS popdemo]; }; + Rage = derive2 { name="Rage"; version="1.4.0"; sha256="0p9k0iddblqn6fz73lkvic93yavsbbsb1jldwfam0dbac8sgq6w5"; depends=[DiagrammeR MASS popdemo]; }; RainfallErosivityFactor = derive2 { name="RainfallErosivityFactor"; version="0.1.0"; sha256="16yrr2bl62m1nr81nzvmdq7s78f7fg50dah5dg5q4j4j7z8qfsqz"; depends=[]; }; RamanMP = derive2 { name="RamanMP"; version="1.0"; sha256="0rdj8vvs9l86yscx2mvy6nazzws8gd1x5bxvszlssinb20pns69z"; depends=[dplyr ggplot2 ggrepel imputeTS]; }; Ramble = derive2 { name="Ramble"; version="0.1.1"; sha256="0225za85i5nvf8l89i5bz7nxsxykd3v9fp1wgihmncca6n8vhgpl"; depends=[]; }; @@ -4310,10 +4363,9 @@ in with self; { RationalMatrix = derive2 { name="RationalMatrix"; version="1.0.0"; sha256="1nzhfmvckb9hp53lyw6gyv5r492n4xii8l1xkr38p5i07r52zq2c"; depends=[BH gmp Rcpp RcppEigen]; }; Ravages = derive2 { name="Ravages"; version="1.1.3"; sha256="0scfxzfisqcj9zn50pvhy9xrl3k5bgglp11gqxf885yskdiwrkik"; depends=[bedr BH curl data_table dfidx Formula gaston mlogit Rcpp RcppEigen RcppParallel]; }; RavenR = derive2 { name="RavenR"; version="2.2.0"; sha256="17m6q6v3s3maj3wlic9id4bll4n3waa34sj8580l1kd5knhybmil"; depends=[colorspace cowplot crayon DiagrammeR dplyr dygraphs gdata ggplot2 igraph lubridate magrittr purrr Rcpp RCurl scales stringr tidyr visNetwork xts zoo]; }; - RawHummus = derive2 { name="RawHummus"; version="0.3.0"; sha256="1d7j7687jgmkspd6avpvz83pzq230xsmcdhiwsm7j45bl9rzicn0"; depends=[config data_table dplyr ggplot2 golem kableExtra markdown plotly purrr RaMS RColorBrewer rmarkdown shiny shinycustomloader shinydashboard shinydashboardPlus shinyMatrix]; }; - Rbeast = derive2 { name="Rbeast"; version="0.9.7"; sha256="15vbkj2lxgfvirjv2v71zjkl8z8pn5db1jpk2amb1iih8w7ll7pp"; depends=[]; }; + RawHummus = derive2 { name="RawHummus"; version="0.3.3"; sha256="0m88cywxwwiyvr2i7ipi9yf5znzdjfsmgz2x0ry4d6mm5469rws4"; depends=[config data_table dplyr ggplot2 golem kableExtra markdown plotly purrr RaMS RColorBrewer rmarkdown shiny shinycustomloader shinydashboard shinydashboardPlus shinyMatrix]; }; + Rbeast = derive2 { name="Rbeast"; version="0.9.9"; sha256="1can7nlh5vg0imgid4p2zvffz507f716aa7krkyqmfpmw2wg9nc1"; depends=[]; }; Rbent = derive2 { name="Rbent"; version="0.1.0"; sha256="0xkb57dhhfd3342rv0xwbhbhn4zp5fbfch84fbh0sickm09l9vrj"; depends=[Rfit]; }; - Rbgs = derive2 { name="Rbgs"; version="0.2"; sha256="1q0dnbcpgx7x9klr6z33z6g2p9p8mrmhnsqjy6qw15ch720rrgn3"; depends=[imager magrittr rJava]; }; RblDataLicense = derive2 { name="RblDataLicense"; version="0.2.5"; sha256="05xwk8j8qgy89vg1dkjwslbbbb3nrqagbiwag8giyzifx7w0gfsp"; depends=[RCurl xts]; }; Rblpapi = derive2 { name="Rblpapi"; version="0.3.14"; sha256="1xrfz5f7vibsfdn0v3mg7rvbn31j9znqk902cb1fwbqfqnkxw9yx"; depends=[BH Rcpp]; }; Rborist = derive2 { name="Rborist"; version="0.3-2"; sha256="12x9nyyii7yzd7in51h7x1i2g9q6zb7138jy81hlwmfhlk6k1kj6"; depends=[data_table Rcpp]; }; @@ -4356,7 +4408,7 @@ in with self; { RcmdrPlugin_TeachStat = derive2 { name="RcmdrPlugin.TeachStat"; version="1.1.1"; sha256="1bl024sh7sg4v77ivx195bx0j2zw7gxd2a9qzc35898xxgfgas8q"; depends=[distr distrEx Hmisc IndexNumR lme4 Rcmdr tcltk2 tseries]; }; RcmdrPlugin_TeachingDemos = derive2 { name="RcmdrPlugin.TeachingDemos"; version="1.2-0"; sha256="14zsqjni2w2smq99cv1pjdw90zw83g4nn7h7cn07fms9j0g12yd6"; depends=[Rcmdr TeachingDemos]; }; RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="5.1-1"; sha256="15z2pyi92vznkbfqycc33b39dl2wx0kf2l5w1wv8pr85i5449dzq"; depends=[IQCC qcc qicharts2 randtests Rcmdr rmarkdown TeachingDemos tseries]; }; - RcmdrPlugin_WorldFlora = derive2 { name="RcmdrPlugin.WorldFlora"; version="1.2"; sha256="1k3gx4m4j9yyaf1d069y863v8snpfb6njppan7dlhlg5nrc5my7k"; depends=[Rcmdr WorldFlora]; }; + RcmdrPlugin_WorldFlora = derive2 { name="RcmdrPlugin.WorldFlora"; version="1.3"; sha256="1rcmn5drv3q09v9hz383010g8377lfiazhjq1vd0f90gf0nl5jfy"; depends=[Rcmdr WorldFlora]; }; RcmdrPlugin_aRnova = derive2 { name="RcmdrPlugin.aRnova"; version="0.0.5"; sha256="0ys3565pcbr554yb1gi2h149vhvwc0gdfmh7mz8zzd4367hqn553"; depends=[Rcmdr]; }; RcmdrPlugin_coin = derive2 { name="RcmdrPlugin.coin"; version="1.0-23"; sha256="1xl077cvabsbzhq3hn4yyc500645lbmyvdnvx2m9rcpwvyghlzvf"; depends=[coin multcomp Rcmdr survival]; }; RcmdrPlugin_cpd = derive2 { name="RcmdrPlugin.cpd"; version="0.2.0"; sha256="1s0y40nh91fi6i91zvn7q106d4nnshflfnzs8m63skklsdxk3by0"; depends=[cpd Rcmdr RcmdrMisc]; }; @@ -4366,18 +4418,18 @@ in with self; { RcmdrPlugin_survival = derive2 { name="RcmdrPlugin.survival"; version="1.3-0"; sha256="00baj2afa39n0r7hpinigdrx3jmr7akffsj0hy1wjdx673kzp242"; depends=[car date Rcmdr survival]; }; RcmdrPlugin_temis = derive2 { name="RcmdrPlugin.temis"; version="0.7.10"; sha256="02rs5xdj6g57frndc87fly0ans16584j4d0rfpy1h72655cz66ab"; depends=[ca lattice latticeExtra NLP R2HTML Rcmdr RColorBrewer slam stringi tcltk2 tm zoo]; }; Rcompadre = derive2 { name="Rcompadre"; version="1.2.1"; sha256="11nm8dmclvr4p5w7r53pmi12b9b5w2jvfah70vln5pgmfpzhbmz4"; depends=[popdemo tibble]; }; - Rcplex = derive2 { name="Rcplex"; version="0.3-5"; sha256="10z5akab66d8a3rcs5dbqq1w59hhyn52mq8vpjhcxpzqqc3c7442"; depends=[slam]; }; + Rcplex = derive2 { name="Rcplex"; version="0.3-6"; sha256="01254ygn661zp0h6xf04vw77vppm54y3g8fcmcxfj4m36nk7jc01"; depends=[slam]; }; Rcpp = derive2 { name="Rcpp"; version="1.0.10"; sha256="0inmnmi0pqmbqnl00d5yal1bmd7awigxd7sgzjsil9c1k55f4r8y"; depends=[]; }; Rcpp11 = derive2 { name="Rcpp11"; version="3.1.2.0.1"; sha256="0vw41plcl7hbi0af3la0sb4x8zqnhxjpjslx8r8cllfamy9dixki"; depends=[]; }; RcppAPT = derive2 { name="RcppAPT"; version="0.0.9"; sha256="03q2i1b9lrb0sn0vq4jyqjiy2zwi2ydhzlnw1b8nj9xdfxx804mx"; depends=[Rcpp]; }; RcppAlgos = derive2 { name="RcppAlgos"; version="2.7.2"; sha256="1wfwwbv9wrs2vbk0c36zcwcl9yyzz2h1mw36mpq7lz56xxhy0wf5"; depends=[cpp11 gmp]; }; RcppAnnoy = derive2 { name="RcppAnnoy"; version="0.0.20"; sha256="11fgxbx3w36937h22v9pqx0nk5vpxp3hybj7k1b0lk8mj7hcginw"; depends=[Rcpp]; }; - RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.12.2.0.0"; sha256="1dvq5ng39ypz8vhqfzjnqhibvryshnxdfcsfy2jjyn0j7x0yi74g"; depends=[Rcpp]; }; + RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.12.4.0.0"; sha256="1jw2fhbva0qrgd4cwddjgwl8f8fzkxyp6vysl1qabh5bcp259nzn"; depends=[Rcpp]; }; RcppArray = derive2 { name="RcppArray"; version="0.2.0"; sha256="1a8gjvzad38d234vp5a4ca5hb1cdyijlwb0l6hgwpr04h9bm539v"; depends=[Rcpp]; }; RcppBDT = derive2 { name="RcppBDT"; version="0.2.6"; sha256="11l70rlayg2xzmg34sg3896adzpfpvplciyicjpk963bddjb2ys8"; depends=[BH Rcpp]; }; RcppBigIntAlgos = derive2 { name="RcppBigIntAlgos"; version="1.0.1"; sha256="157a14kqcf0q3z01mn4w1194k2l39dd4qmqs0i115p8bvkjc6ncd"; depends=[gmp Rcpp RcppThread]; }; RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.12"; sha256="1jr4hi3zbm935q6ykkvnywlma36d3jl7fxmqhxs62jxbnyyqf81a"; depends=[Rcpp]; }; - RcppCGAL = derive2 { name="RcppCGAL"; version="5.4.1"; sha256="1ymnamvnhbx0nbqrlrk8f57py3ccdhirydn1ilvsn6yf1z9bs3sm"; depends=[Rcpp]; }; + RcppCGAL = derive2 { name="RcppCGAL"; version="5.5.2"; sha256="1lmir467ycs25q6a6xsck0x65nrlipzwwzfy204z9gir6g1w553p"; depends=[curl gh Rcpp]; }; RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.11"; sha256="0m9g37hrx33mmxhhzi6qakgiqh6w0c2s624fkgbny9vcabr3dfsx"; depends=[Rcpp]; }; RcppCWB = derive2 { name="RcppCWB"; version="0.6.0"; sha256="05szmi8j3c5lgvcgvd4i0kb6bjvplpbz0kp2kjrb0h3q7bnbkxh0"; depends=[fs Rcpp]; }; RcppCensSpatial = derive2 { name="RcppCensSpatial"; version="0.3.0"; sha256="0ghywbg2zrhd72y3hf99niqlw04gvfzfa02pa581lvvd67z19gjp"; depends=[ggplot2 gridExtra MomTrunc mvtnorm Rcpp RcppArmadillo RcppProgress Rdpack relliptical roptim StempCens]; }; @@ -4414,7 +4466,7 @@ in with self; { RcppRedis = derive2 { name="RcppRedis"; version="0.2.3"; sha256="0rnhb6c8z97h79jyifgnbckb04h48gqrdrsndhk85x4r7n6fv72v"; depends=[RApiSerialize Rcpp]; }; RcppRoll = derive2 { name="RcppRoll"; version="0.3.0"; sha256="0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb"; depends=[Rcpp]; }; RcppSMC = derive2 { name="RcppSMC"; version="0.2.7"; sha256="0rp5s8j72al39rihn0q0j0ws6l1bxl1hlbx31mjllzhiq03pn2mq"; depends=[FKF Rcpp RcppArmadillo]; }; - RcppSimdJson = derive2 { name="RcppSimdJson"; version="0.1.9"; sha256="1vmi8jkvak9pbpvy3s36z9sllcrkcrwsaz1h2gb2mkajc7yqpx2y"; depends=[Rcpp]; }; + RcppSimdJson = derive2 { name="RcppSimdJson"; version="0.1.10"; sha256="1wfhn4lm1538053hr4nk8mqbx3r9lq4p98fk6vw6b9xv84sxsicl"; depends=[Rcpp]; }; RcppSpdlog = derive2 { name="RcppSpdlog"; version="0.0.12"; sha256="1nan0hm49xdl2l1lskm1jf01clfh7aw2v6h57j35qysvg8219fcx"; depends=[Rcpp]; }; RcppStreams = derive2 { name="RcppStreams"; version="0.1.3"; sha256="06il7q3afaws57m0fxf04f2p5dvs23l1f7gl78pxwzclacdy3839"; depends=[BH Rcpp]; }; RcppTN = derive2 { name="RcppTN"; version="0.2-2"; sha256="0m2wc5n1fzxv56s4gqqnygb24dbadgrpgjm4bs4hr6qazgjapymf"; depends=[Rcpp]; }; @@ -4427,18 +4479,18 @@ in with self; { RcppZiggurat = derive2 { name="RcppZiggurat"; version="0.1.6"; sha256="0wgd1v2p7zajnbrjf3hfi56p3pk3ld6iwkanbb04bjbnlif2ay4w"; depends=[Rcpp RcppGSL]; }; Rcrawler = derive2 { name="Rcrawler"; version="0.1.9-1"; sha256="1m6b1h72h8qjqcg3lzw6im6lpnkxhjg65g9fdjjqay6vy52ynznj"; depends=[callr data_table doParallel foreach httr jsonlite selectr webdriver xml2]; }; Rcriticor = derive2 { name="Rcriticor"; version="2.0"; sha256="1cnmmcdp2g3syrlld1pm7101cbzxh02cpvqvgsj7mp6zxm2k5plv"; depends=[]; }; - Rcsdp = derive2 { name="Rcsdp"; version="0.1.57.4"; sha256="0gjbmfbmb0fwdklzc7prywd7na50yph0vfwx4cws9psfzxy7lcaa"; depends=[]; }; + Rcsdp = derive2 { name="Rcsdp"; version="0.1.57.5"; sha256="1lhw7czra10bw8r7cv472wyx58gd4qhs6hsyijsgkfcb9b5qn12h"; depends=[]; }; Rcssplot = derive2 { name="Rcssplot"; version="1.0.0"; sha256="0hnzwjwk9zh4zbzy8sa0z6amikvpd9k1p1abd38khr8q8k1k8jiv"; depends=[]; }; Rcurvep = derive2 { name="Rcurvep"; version="1.2.1"; sha256="1kad4zc0b95gd1h8kxdmqx74mmadcwzpl2vbrsqr620x2zg4lw4y"; depends=[boot dplyr ggplot2 magrittr purrr Rdpack rlang stringr tibble tidyr tidyselect]; }; Rd2md = derive2 { name="Rd2md"; version="0.0.5"; sha256="1kqni87jg3avpcir1ls2kkf6qafkkdkcv51d9azsbqmji5168vlf"; depends=[knitr]; }; Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.14"; sha256="1d45dn1vxx5vq53m8as4fyq7077s1vw9xxq5r7f4fajybpqiby18"; depends=[formatR roxygen2 xfun]; }; - Rdiagnosislist = derive2 { name="Rdiagnosislist"; version="1.0"; sha256="0f7dikc23z7gyhi29dg2l4l1q178d16nad98xvmdbygah8k1b377"; depends=[bit64 data_table]; }; + Rdiagnosislist = derive2 { name="Rdiagnosislist"; version="1.2"; sha256="0jnjqwqvaj6brgpmd9xj04ax5dbwqpbb89hhn1m2bd3v9673k1v3"; depends=[bit64 data_table]; }; Rdice = derive2 { name="Rdice"; version="1.0.0"; sha256="1xibvm690808p2g3jch7rh1825yrpgln2hjfclgxjwn822qvs4xr"; depends=[data_table]; }; Rdimtools = derive2 { name="Rdimtools"; version="1.1.2"; sha256="0bl8ffyy9jb6xp1jb350fj5pw3zvc1dnrdhl4vi25kl84pp30xl6"; depends=[ADMM CVXR maotai MASS mclustcomp RANN Rcpp RcppArmadillo RcppDE RcppDist Rdpack RSpectra]; }; Rdpack = derive2 { name="Rdpack"; version="2.4"; sha256="109mylzmlncq5a09ayy4g2g0frj1k843lj8j78gvmz1h5g8sslkn"; depends=[rbibutils]; }; Rdroolsjars = derive2 { name="Rdroolsjars"; version="1.0.1"; sha256="1l9bc1bwpj10irr973hzkhr04i1f3g998n8hcl2k2i9kgv1naqmz"; depends=[rJava]; }; Rdrw = derive2 { name="Rdrw"; version="1.0.2"; sha256="1487r8z6h1y0v6fxkp7qfbh7j96hw8gqbb0fc90m4cxwz0hrqrn2"; depends=[mvtnorm]; }; - Rdsdp = derive2 { name="Rdsdp"; version="1.0.5.2"; sha256="02lp0p3myybs0fjvfc2jmqdx6xawk7vwj9jpfl9r4pmb74w9f62p"; depends=[]; }; + Rdsdp = derive2 { name="Rdsdp"; version="1.0.5.2.1"; sha256="0lm5c1cv6jyxkmr09khfnsab4bzjbfcg8j04zc4zqimy1541i6yn"; depends=[]; }; Rdta = derive2 { name="Rdta"; version="1.0.0"; sha256="1zmyh61wrzqwyfjbfcxg41cri7hy9r0jfwnixcvd086y0vxq7fdn"; depends=[MCMCpack mvtnorm Rdpack]; }; Rduino = derive2 { name="Rduino"; version="0.1"; sha256="0r1yy3a2n8a4niasfjn77gv130a062i802r7xhbg0abljv5m6ra5"; depends=[serial]; }; Rduinoiot = derive2 { name="Rduinoiot"; version="0.1.0"; sha256="1vrmj2cmf1yz453875d234f53636a3bfr5k5ymy00f4wsjkr9pqj"; depends=[cli httr jsonlite purrr tibble]; }; @@ -4446,7 +4498,7 @@ in with self; { ReDirection = derive2 { name="ReDirection"; version="1.0.1"; sha256="0hcl09drgr93yjssw2mpdpvr084ifzylsi6140hafjpm9f9pmvkm"; depends=[gtools MASS pracma]; }; ReIns = derive2 { name="ReIns"; version="1.0.12"; sha256="06b3iibd50vy367jnia1a5y3s0jbmdwk3hkaylw296576rscib60"; depends=[doParallel foreach Rcpp survival]; }; ReacTran = derive2 { name="ReacTran"; version="1.4.3.1"; sha256="05c9jfvj134gy3by7m3r1fbar0m39vaydr7d2py9cakzs44fqfpj"; depends=[deSolve rootSolve shape]; }; - ReadDIM = derive2 { name="ReadDIM"; version="0.2.10"; sha256="0lljl7iazjykgr5kr6j9is5hcs1h7x9im6rxflsniry6bm9j7qy3"; depends=[raster rgdal rgeos sp stringr]; }; + ReadDIM = derive2 { name="ReadDIM"; version="0.2.11"; sha256="1dyf1hrqcjqramb957kj7ngd65439p7ywa0r2rdlyn4bg89myi7c"; depends=[raster stringr]; }; RealVAMS = derive2 { name="RealVAMS"; version="0.4-5"; sha256="17sr3g89p645cn6zb887xvrp9f8rrm7zm9mhgf9ky14fmz644d9r"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; Rearrangement = derive2 { name="Rearrangement"; version="2.1"; sha256="0q253nj62rl65vjsq6503r80qa2j35wac8lv7ydp9w260p28z923"; depends=[quantreg]; }; RecAssoRules = derive2 { name="RecAssoRules"; version="1.0"; sha256="0jvl9yl1rg69bqb1cimi8r0bry73jhsq73fxfyy33ljwym2cdgv6"; depends=[Rcpp]; }; @@ -4457,7 +4509,9 @@ in with self; { Records = derive2 { name="Records"; version="1.0"; sha256="08y1g2m6bdrvv4rpkhd5v2lh7vprxy9bcx9ahp1f7p062bn2lwji"; depends=[]; }; RedditExtractoR = derive2 { name="RedditExtractoR"; version="3.0.9"; sha256="1yzx8ja3iww8nn4i7m98scd35czwd1mx143d20j491wkndfd926d"; depends=[RJSONIO]; }; RedisBaseContainer = derive2 { name="RedisBaseContainer"; version="1.0.1"; sha256="0pnjj3rbp2as7h92907g338bd173ygl1zfnlfw6c9wpzfvw909rr"; depends=[DockerParallel]; }; + Rediscover = derive2 { name="Rediscover"; version="0.3.2"; sha256="0g36j5xdc86422jc1njlab4kvlsq3z6bxigxgzsl31bf1k7kc1ra"; depends=[data_table maftools Matrix matrixStats PoissonBinomial RColorBrewer ShiftConvolvePoibin]; }; Redmonder = derive2 { name="Redmonder"; version="0.2.0"; sha256="02qrz1b0g7hdacj2s2bks5gfwnypkbiwlmn0bv7im1zz1swg9cp8"; depends=[]; }; + RefBasedMI = derive2 { name="RefBasedMI"; version="0.1.0"; sha256="1b28mm7wfrffwhr7zbhfgp5svbnvnahiwkh514977w1azbqsfcjd"; depends=[assertthat data_table Hmisc mice norm2 pastecs]; }; RefManageR = derive2 { name="RefManageR"; version="1.4.0"; sha256="1kjd66gp2z9fzrnyr1bqfd9p58q0bin3a187z9b56hiqmdjhyc78"; depends=[bibtex httr jsonlite lubridate plyr stringr xml2]; }; RegCombin = derive2 { name="RegCombin"; version="0.2.1"; sha256="1p6zn0mf3x7f8544xpdgxlf59mzc3b39w2dxwr63hh49nk4pa4q5"; depends=[dplyr geometry Hmisc kableExtra pracma RationalExp snowfall]; }; RegKink = derive2 { name="RegKink"; version="0.1.0"; sha256="1q7jpsh3al18i2dv67lmv5d6jgiy2px8jaxwkgg62njisk8c5qng"; depends=[MASS]; }; @@ -4471,14 +4525,15 @@ in with self; { RelimpPCR = derive2 { name="RelimpPCR"; version="0.2.4"; sha256="0svfyh313wawzqx9hfb4cg0wn2ir6nd769z1k3dckdsb8d7xkh3q"; depends=[caret ggplot2 relaimpo reshape2 Rmisc]; }; Renext = derive2 { name="Renext"; version="3.1-3"; sha256="0m5br76n0vd6q1kkjp6w7qxhvrplc63dxm5zcw6cy9f302x76jdk"; depends=[evd numDeriv]; }; RenvModule = derive2 { name="RenvModule"; version="1.1"; sha256="1wmz6k0f9lpa8d7qxqm308l7h11k0cj07q3qisfjic5sp308c3d2"; depends=[]; }; - Renvlp = derive2 { name="Renvlp"; version="3.3"; sha256="0fas3h2kwvrp0pmfghp0131wzh6ds7ngrrpd6nk4x5z4s5adar8j"; depends=[Matrix matrixcalc orthogonalsplinebasis pls Rsolnp]; }; + Renvlp = derive2 { name="Renvlp"; version="3.4"; sha256="1lnjx33yhqjdbq9lx0b1ag45xyhg0j1gjfaplv14kn9jicx6ddnm"; depends=[Matrix matrixcalc orthogonalsplinebasis pls Rsolnp]; }; RepaymentPlan = derive2 { name="RepaymentPlan"; version="0.1.0"; sha256="1fd4n24bd5s2kqmls7mmsidblaf8nzm97kz52mfsb6i6fci0pgah"; depends=[]; }; RepertoiR = derive2 { name="RepertoiR"; version="0.0.1"; sha256="1m7n7p40n3djy91z8z3gqqwscqgij63rjrj2bqbl3baqz16nf4hc"; depends=[circlize igraph reshape2 stringdist stringi stringr]; }; Replicate = derive2 { name="Replicate"; version="1.2.0"; sha256="0kqy248c8n7qr5hwzvqm7flnjlwd60c577r1d4vzgfxn7azd5v3v"; depends=[ggplot2 metafor]; }; ReplicationSuccess = derive2 { name="ReplicationSuccess"; version="1.3.1"; sha256="1dcn6m9lx7ri1isv2ym7i26sbwkdrgpv0qi4sr0b64wc8mqrxdwh"; depends=[]; }; Repliscope = derive2 { name="Repliscope"; version="1.1.1"; sha256="04sxcnsd8vz5kbzqz52iqzwayrmkzc51bcwnfkp53wymiw4vppiz"; depends=[colourpicker ggplot2 shiny]; }; RepoGenerator = derive2 { name="RepoGenerator"; version="0.0.1"; sha256="0d6s2sqyycaqrg32xdkp3pr5i7qmvwrfrjcd7f94a9y3lz4bz5b5"; depends=[git2r httr rmarkdown rstudioapi]; }; - Require = derive2 { name="Require"; version="0.3.0"; sha256="0s1rqvahfbxhs0lcqzrx9nl9y4blczr76rk7b2dh1lqvyycrk1yy"; depends=[data_table]; }; + Require = derive2 { name="Require"; version="0.3.1"; sha256="1d87vzxix2lwqjkl5h5kcpvjyd794li5z8vxf1r5dyd7nzmkm1qq"; depends=[data_table]; }; + ResIN = derive2 { name="ResIN"; version="0.1.0"; sha256="021g8chj4z32afvc9iq4dd9maq4xa7d6xif8d9xbzyfg57c1zxyd"; depends=[DirectedClustering dplyr fastDummies ggplot2 igraph Matrix qgraph wCorr]; }; ResPBIBD = derive2 { name="ResPBIBD"; version="0.1.0"; sha256="00a3qbam4dc9lwfyqq63j8q9yppd4nr7pk0wbikjfw6rnbjsl1sh"; depends=[]; }; ResearchAssociate = derive2 { name="ResearchAssociate"; version="1.0.1"; sha256="00j339ngc72gn2gyn1irjmazrv6l5nbsy3z25r6j1zrjwsbay15p"; depends=[ggplot2 plyr rentrez XML]; }; ResidentialEnergyConsumption = derive2 { name="ResidentialEnergyConsumption"; version="1.1.0"; sha256="0m24x5mha58ihsd06jkcb3wi796v3gkjg78w8vah21p9gqdmqxw1"; depends=[]; }; @@ -4488,7 +4543,7 @@ in with self; { RestRserve = derive2 { name="RestRserve"; version="1.2.1"; sha256="1xfcp0y9l31815g1jk33mnkb6z68qpjl0gb4fj7f4578kx3v1c8p"; depends=[checkmate digest jsonlite mime R6 Rcpp Rserve uuid]; }; RestoreNet = derive2 { name="RestoreNet"; version="1.0"; sha256="015j8kw0msixjxljhpj4hnj67k9z89zcsyga0jva4ig5ri24rj34"; depends=[ggplot2 Matrix RColorBrewer scales scatterpie stringr xtable]; }; RevEcoR = derive2 { name="RevEcoR"; version="0.99.3"; sha256="1nym263ynjdir5kxv35jnmki9mshlplq0sk3xnjd4ac6f1cfbfqj"; depends=[gtools igraph magrittr Matrix plyr purrr stringr XML]; }; - RevGadgets = derive2 { name="RevGadgets"; version="1.1.0"; sha256="1d14wf6zya1p9wrh1yvrl1gryldvnq7zvhi3b99002w9jph5zp25"; depends=[ape deeptime dplyr ggimage gginnards ggplot2 ggplotify ggpp ggthemes ggtree phytools png reshape scales tibble tidyr tidytree treeio]; }; + RevGadgets = derive2 { name="RevGadgets"; version="1.1.1"; sha256="0vs6wcapckyy2i2g1699sha963gwfy68swvd2xxphxnlsa8hfr3f"; depends=[ape deeptime dplyr ggimage gginnards ggplot2 ggplotify ggpp ggthemes ggtree phytools png reshape scales tibble tidyr tidytree treeio]; }; ReviewR = derive2 { name="ReviewR"; version="2.3.8"; sha256="19cj92v7356n3910dx2z8xzi78fynd32kb9132ll2xw295mfk61i"; depends=[bigrquery config dashboardthemes DBI dbplyr dplyr DT gargle glue golem httr jsonlite magrittr purrr redcapAPI REDCapR rlang RPostgres RSQLite shiny shinycssloaders shinydashboard shinydashboardPlus shinyjs shinyWidgets snakecase stringr tibble tidyr]; }; Revticulate = derive2 { name="Revticulate"; version="1.0.0"; sha256="00pz8nnbl7dcbbqw8kdbdai1i3jc941l42nppaa1kxk6i3dci7gs"; depends=[ape comprehenr jsonlite knitr rstudioapi stringr usethis]; }; Rexperigen = derive2 { name="Rexperigen"; version="0.2.1"; sha256="158ksnd1gvzq7ii0ys2v0wrfnr001hni0i8m77p1fn1arixgmqdw"; depends=[digest jsonlite RCurl]; }; @@ -4506,7 +4561,7 @@ in with self; { Rgbp = derive2 { name="Rgbp"; version="1.1.4"; sha256="1y51sms321sbrl3rgzp5hq4y5mqkrjxsyrq75gkcbwfvlakjcfrg"; depends=[mnormt sn]; }; Rgff = derive2 { name="Rgff"; version="0.1.6"; sha256="1prcjnr4zvp8ksrnzrvz7zmwbsximhg3aifa1wsz6h9aa3pcl2gl"; depends=[data_tree dplyr magrittr RJSONIO rlang stringi tibble tidyr withr]; }; Rglpk = derive2 { name="Rglpk"; version="0.6-5"; sha256="18bwnpb8645vf233andr411shzp1sm3i7bn848sgxswgb80grvxa"; depends=[slam]; }; - Rgof = derive2 { name="Rgof"; version="1.0.1"; sha256="08sksi2vd5zzkvg51182qzp3p9b726xvd67k14d8210lhb1dcvbz"; depends=[ggplot2 Rcpp]; }; + Rgof = derive2 { name="Rgof"; version="1.1.0"; sha256="11lmi0zkrdgbp38py84bnxi7yb75abad8rw20pip48nnvrdjzrs4"; depends=[ggplot2 Rcpp]; }; RgoogleMaps = derive2 { name="RgoogleMaps"; version="1.4.5.3"; sha256="02v8k0bw70q4qwx4lcdy8p25q7n3ql2ll46lfpqllxa1p26svmfi"; depends=[png sp]; }; RhpcBLASctl = derive2 { name="RhpcBLASctl"; version="0.23-42"; sha256="05b6jhmxdr1rdpbvf5gwi9dqb57m8z2860qzkw5hcr72d5drv22w"; depends=[]; }; Ricrt = derive2 { name="Ricrt"; version="0.1.0"; sha256="12fj6q5disl5vmpcwfvf64zqxjw2srrvbvpy10gy81k5lidzznqc"; depends=[dplyr glmnet randomForest Rdpack rlang SuperLearner tidyverse]; }; @@ -4515,7 +4570,6 @@ in with self; { Riex = derive2 { name="Riex"; version="1.0.2"; sha256="03627dik6dd9d2kwv757zanh0i4invmcwg162m9ayhv41ygj5z1l"; depends=[dplyr ggplot2 httr purrr quantmod rjson stringr tibble tidyr TTR urltools xts zoo]; }; Rigma = derive2 { name="Rigma"; version="0.2.1"; sha256="0h0fblnsbrkkvd0cimywa3gq4q7ay9p39f7x2rpis58kj28ra6fn"; depends=[bslib checkmate dplyr fs glue httr2 lubridate magrittr png purrr rlang tibble tidyr withr xml2]; }; Rilostat = derive2 { name="Rilostat"; version="1.1.8"; sha256="02fmz4jla151w6bz0zg766q4d34kz1jf43156yr2f90zj8x4jjx4"; depends=[data_table dplyr DT haven plyr RCurl readr stringr tibble tidyr xml2]; }; - Rip46 = derive2 { name="Rip46"; version="1.0.2"; sha256="0wfp6fm5mgmjqjkn0c5hvjd95yn4zcv0s8xc5294qf5jqxp8b1w7"; depends=[Rcpp]; }; Rirt = derive2 { name="Rirt"; version="0.0.2"; sha256="0npd2g3a4dh5hlj6l06k1pf0j4731ybqqd4mpi4id16nf81cg104"; depends=[ggplot2 Rcpp reshape2]; }; Risk = derive2 { name="Risk"; version="1.0"; sha256="1i42xcc699syj108mvgklwb30wkf9c9jrg5rmd2ypnqk9mnyg2fg"; depends=[]; }; RiskPortfolios = derive2 { name="RiskPortfolios"; version="2.1.7"; sha256="07mhn8imn4y8kf50x2g7i55dyksh0sryjkzb09rkf64x49vq7ban"; depends=[MASS nloptr quadprog]; }; @@ -4525,25 +4579,26 @@ in with self; { Rivivc = derive2 { name="Rivivc"; version="0.9.1"; sha256="0vbnkid5cp9af0m2kk3cblb3fr69llzmk6ckjy1brgyvrrmw5hz3"; depends=[signal]; }; RkMetrics = derive2 { name="RkMetrics"; version="1.3"; sha256="1k6vnr1r4h69iznib638z45gd0f8wc4g4h0ji9f0017883g77li1"; depends=[]; }; Rlab = derive2 { name="Rlab"; version="4.0"; sha256="019rmciqza5rd5z9hvh8xk20c2rjhzyzp1k5731qm1d3jz5lwx5k"; depends=[]; }; - Rlabkey = derive2 { name="Rlabkey"; version="2.10.0"; sha256="0dvqf14z3k2x1zifp8ix8895vs8y25jia804fhnsb54z2r9pqcrm"; depends=[httr jsonlite Rcpp]; }; + Rlabkey = derive2 { name="Rlabkey"; version="2.11.0"; sha256="090fpd8wn3k1xf5l0cy8q420hmp562kzb1vviq6plalnby667mhq"; depends=[httr jsonlite Rcpp]; }; Rlgt = derive2 { name="Rlgt"; version="0.1-4"; sha256="11nhgzdf37345m5k153pfrdsqbg6gpp4g8xig19pcf4sbmqq2k5l"; depends=[BH forecast Rcpp RcppEigen RcppParallel rstan rstantools sn StanHeaders]; }; Rlibeemd = derive2 { name="Rlibeemd"; version="1.4.2"; sha256="0hzsnrz30429pavf7qghknykah9ks4msb96zwa1xgvqb4zd512dg"; depends=[Rcpp]; }; Rlinkedin = derive2 { name="Rlinkedin"; version="0.2"; sha256="15sbiis1d0s466nqk1adjhflb01sb9kn25f4y6sagkdggvyz6b56"; depends=[httpuv httr XML]; }; Rlinsolve = derive2 { name="Rlinsolve"; version="0.3.2"; sha256="1xv500n1480qyakw0isanw1s5ywykhc207hqja4804s5s2m8zfjw"; depends=[Matrix Rcpp RcppArmadillo Rdpack]; }; Rlof = derive2 { name="Rlof"; version="1.1.3"; sha256="068898i310ylddpndh0dsiaiimmdk8pc1rbvh4a8ikihwbc9hk55"; depends=[doParallel foreach]; }; + Rmalschains = derive2 { name="Rmalschains"; version="0.2-10"; sha256="15z2jz5zv3cw18kgvpm11g2i5p397h4a34j08wbkgmnjca76sgmd"; depends=[Rcpp]; }; RmarineHeatWaves = derive2 { name="RmarineHeatWaves"; version="0.17.0"; sha256="09lrrxnkkfnbidnmag1czx2xzssdl09348nkc6pqgq6xz36a3mqc"; depends=[dplyr ggplot2 lazyeval lubridate plyr raster rlang tibble tidyr zoo]; }; - RmdConcord = derive2 { name="RmdConcord"; version="0.1.6"; sha256="08kjazcrkhssprmsxcyc0h0id1dzcgp5135ki051jgdl805qcr0n"; depends=[knitr rmarkdown]; }; + RmdConcord = derive2 { name="RmdConcord"; version="0.2.0"; sha256="08yd6g2yawxr4k5awgrvnm720w5jsq9g5q9xqlvdr9pvmv8xnv4c"; depends=[knitr rmarkdown]; }; RmecabKo = derive2 { name="RmecabKo"; version="0.1.6.2"; sha256="1i08wlfd14wmvwrsvjyhgzxkwzfp4jiwbzymw8m25pvyjxgi7jmy"; depends=[Rcpp stringr]; }; Rmisc = derive2 { name="Rmisc"; version="1.5.1"; sha256="1h6jb0xwkyhm9lwm7nj9bhrb5dhrsifvkpqkrd594j1lz74dar8x"; depends=[lattice plyr]; }; Rmixmod = derive2 { name="Rmixmod"; version="2.1.8"; sha256="0dbx06idj1hnmkx4shmqllaw2klgbmq4acb1c3zi83fp4fx5vfay"; depends=[Rcpp RcppEigen]; }; Rmolt = derive2 { name="Rmolt"; version="1.0.0"; sha256="0fmis81h4c16wpwx6g60szf9d1gyvi60md2gn2mqln9gcf7w0icy"; depends=[]; }; Rmosek = derive2 { name="Rmosek"; version="1.3.5"; sha256="18q39n2p3gms9zqrl8g15rjjk4v64365v0rm8r7zvvivh1hy5xa0"; depends=[]; }; - Rmpfr = derive2 { name="Rmpfr"; version="0.9-1"; sha256="0m4x4mndyvm374h2mnb3zs8hlbzafpzfqjpypr91h886dfs1vbyv"; depends=[gmp]; }; + Rmpfr = derive2 { name="Rmpfr"; version="0.9-2"; sha256="0phpyw7zawz517ffrk8lj73v17zd2vmjidydhw690w5rycrdlqzd"; depends=[gmp]; }; Rmpi = derive2 { name="Rmpi"; version="0.7-1"; sha256="1h9dvlh9mvbc4lhxbv9c8yak3yrq4p7xym92pk5al5wkx9yy5nhp"; depends=[]; }; Rmst = derive2 { name="Rmst"; version="0.0.3"; sha256="1fykpii17k460qlsjhhh5vag02lhkyk5l3zjmg8hifqp0cjhz2fl"; depends=[ggplot2 Rata reshape2 Rirt]; }; RnavGraphImageData = derive2 { name="RnavGraphImageData"; version="0.0.4"; sha256="1k1gnkghap878fck0bbz9mm0fr4cli6lh1d11r0cf47fvl6cc4gr"; depends=[]; }; Rnightly = derive2 { name="Rnightly"; version="0.1.0"; sha256="08sb4ic7my8b6xcjn9vim8wp4z3kvk0gyp604dg1az7czc7ics5r"; depends=[glue htmltools]; }; - Rnmr1D = derive2 { name="Rnmr1D"; version="1.3.0"; sha256="1x06a2bsfpx27pgpxj0dih72pav26g3j0lmh0fa8gjw45jc64f4a"; depends=[base64enc doParallel foreach ggplot2 igraph impute MASS MassSpecWavelet Matrix minqa plotly plyr ptw Rcpp signal speaq XML]; }; + Rnmr1D = derive2 { name="Rnmr1D"; version="1.3.2"; sha256="0apkwrsxcp2frq9lmfn70dn2ajaiswnbvfjmqc7lbrimya3pwznb"; depends=[base64enc doParallel foreach ggplot2 igraph impute MASS MassSpecWavelet Matrix minqa plotly plyr ptw Rcpp scales signal XML]; }; Rnumerai = derive2 { name="Rnumerai"; version="3.0.1"; sha256="0pwb7yk79zbmcrpa9fw1i7yjvr5md2nn67rsl1i1sbjkd1rgg0vd"; depends=[ghql httr jsonlite lubridate]; }; Rnvd3 = derive2 { name="Rnvd3"; version="1.0.0"; sha256="13l5vcbcm88jfsc11ijkvr1s8qk8fflclazs4kl1k2wzpnlr6z6a"; depends=[data_table htmltools htmlwidgets jsonlite lazyeval lubridate viridisLite]; }; RoBMA = derive2 { name="RoBMA"; version="2.3.2"; sha256="0px52w7rv8jpc3wd1k2kvxr4z57a82mh7g7pdqiihlzq8qrk14d1"; depends=[BayesTools coda ggplot2 mvtnorm Rdpack rjags rlang runjags scales]; }; @@ -4555,7 +4610,7 @@ in with self; { RobGARCHBoot = derive2 { name="RobGARCHBoot"; version="1.2.0"; sha256="142r6cmzwhg4xfbpbgrvngncm2wczly2arg6p8612ypjsk4yinrf"; depends=[doParallel doRNG foreach Rcpp RcppArmadillo]; }; RobKF = derive2 { name="RobKF"; version="1.0.2"; sha256="0jmc11s9gl4fin4p6wwd79m3zqbr65p1x8h69qcxmx4cy9af54kq"; depends=[ggplot2 Matrix Rcpp RcppEigen Rdpack reshape2]; }; RobLox = derive2 { name="RobLox"; version="1.2.0"; sha256="1lcylkskfidg576lqfi84l14rvrpfbzmr53hcgzzmfipxhli4dr8"; depends=[Biobase distr distrMod lattice RandVar RColorBrewer RobAStBase]; }; - RobLoxBioC = derive2 { name="RobLoxBioC"; version="1.2.0"; sha256="01lydp67v7mc4v3svsnl4zqq2jy1czwg9l9blngjn9ky0hv3haf5"; depends=[affy AnnotationDbi beadarray Biobase BiocGenerics distr distrMod lattice RColorBrewer RobLox]; }; + RobLoxBioC = derive2 { name="RobLoxBioC"; version="1.2.1"; sha256="0n7lsxdsn8amr1la8jqg4xpzgd529dd7mxz0ly3bc1j9lxip2xsn"; depends=[affy AnnotationDbi beadarray Biobase BiocGenerics distr distrMod lattice RColorBrewer RobLox]; }; RobMixReg = derive2 { name="RobMixReg"; version="1.1.0"; sha256="13w6zvncwh561wzzqy548x0w25rnzf0pfvi5cc6mzn71x5l7cmh2"; depends=[dplyr flexmix glmnet gplots gtools lars MASS RColorBrewer rlang robust robustbase scales]; }; RobPer = derive2 { name="RobPer"; version="1.2.3"; sha256="0zhn7lwh3lb9na9h59air2idc3nibjdw2mfgg9qa5h27p9amm1l7"; depends=[BB quantreg rgenoud robustbase]; }; RobRex = derive2 { name="RobRex"; version="1.2.0"; sha256="1npgbdvdzb0p0w77fsngrwg968y621p3lx8qw69ns8qgxjkismqp"; depends=[distr RandVar RobAStBase ROptRegTS]; }; @@ -4570,7 +4625,7 @@ in with self; { RobustIV = derive2 { name="RobustIV"; version="0.2.5"; sha256="1iz5g0ynkx38vdsf7rm8haai7a8igw3rdqrgxllahnbykwhm4d51"; depends=[CVXR glmnet igraph intervals MASS Matrix]; }; RobustLinearReg = derive2 { name="RobustLinearReg"; version="1.2.0"; sha256="06137f516gyj64qdmwby7m1xnvj4hxzpqj454jn0xcinvl89380w"; depends=[]; }; RobustRankAggreg = derive2 { name="RobustRankAggreg"; version="1.2.1"; sha256="0p2nbgxv2132gcyx7zq2gzl6ipsxndx64i7y8v9nh5awcdy8v44p"; depends=[]; }; - Robyn = derive2 { name="Robyn"; version="3.9.0"; sha256="10zsv3h3v4p922m4d27ym4prgx542qncm4wy7sxf7n8yb640yyx5"; depends=[doParallel doRNG dplyr foreach ggplot2 ggridges glmnet jsonlite lares lubridate minpack_lm nloptr patchwork prophet reticulate rPref stringr tidyr]; }; + Robyn = derive2 { name="Robyn"; version="3.10.3"; sha256="1nsicscgdp85mhvwb3i6liqhvkszj5x3z6rhm6v3vq7mfxwfn7rf"; depends=[doParallel doRNG dplyr foreach ggplot2 ggridges glmnet jsonlite lares lubridate minpack_lm nloptr patchwork prophet reticulate stringr tidyr]; }; RockFab = derive2 { name="RockFab"; version="1.2.1"; sha256="0w1xvx5andm8mq3wfqgry8nbjvz4przz3bk771xz89bq60ws0q57"; depends=[EBImage rgl]; }; Rogue = derive2 { name="Rogue"; version="2.1.5"; sha256="0qvzpdxszbgkjvbrslizjnysbps9skn22ihvk79mvhi8kshw3pz8"; depends=[ape cli fastmatch matrixStats Rdpack Rfast TreeDist TreeTools]; }; RolWinMulCor = derive2 { name="RolWinMulCor"; version="1.2.0"; sha256="0vfsgp0qvv6pnpai8nyy0xzzlzyjwx98xrhlwlks9dbm84wg8vqr"; depends=[colorspace gtools pracma scales zoo]; }; @@ -4588,7 +4643,7 @@ in with self; { Rphylopars = derive2 { name="Rphylopars"; version="0.3.9"; sha256="05dzkpr5d7n5c3nng5flrgh0hgg16s19mx1940ilh3n4jgvz0rxq"; depends=[ape doBy MASS Matrix numDeriv phylolm phytools Rcpp RcppArmadillo]; }; Rpoet = derive2 { name="Rpoet"; version="1.1.0"; sha256="11gp4zg0wc2a21956355rkr3i3dyaabfz0z30z4phn8s7y3yqr92"; depends=[]; }; Rpolyhedra = derive2 { name="Rpolyhedra"; version="0.5.4"; sha256="00wmxk8j89lyzbb7fws4g8znnqbw5dh64vqhxjg5rxjdpr3vibl8"; depends=[digest geometry git2r lgr R6 rgl stringr XML]; }; - Rpoppler = derive2 { name="Rpoppler"; version="0.1-1"; sha256="1hx3c6iqkxfwppv9168d2wrgfsxi1zl29cbi684w7ndvchfly49v"; depends=[]; }; + Rpoppler = derive2 { name="Rpoppler"; version="0.1-2"; sha256="11m3vw1an91567nf72vz2cbm520vbh6h4dmfzbrxbw24qy3y58x3"; depends=[]; }; RprobitB = derive2 { name="RprobitB"; version="1.1.2"; sha256="1acxgxv4v7id7smrg9f8dfxx9y17pvqwsbfg0n8zdd99q724bpx5"; depends=[cli crayon doSNOW foreach ggplot2 gridExtra MASS mixtools mvtnorm plotROC progress Rcpp RcppArmadillo rlang viridis]; }; Rprofet = derive2 { name="Rprofet"; version="2.2.1"; sha256="150123vxdd31p96f3vsri46ryfng2xvnjgm6mdiqczg48xyfpbdp"; depends=[binr ClustOfVar ggplot2 gridExtra plyr sqldf stringr]; }; Rquake = derive2 { name="Rquake"; version="2.4-4"; sha256="1929qxqbb6s316zb9x2q1kwz2pvwpvqr1w6iw8vm5vijyf1nvv30"; depends=[GEOmap MBA minpack_lm RPMG RSEIS]; }; @@ -4596,8 +4651,8 @@ in with self; { Rramas = derive2 { name="Rramas"; version="0.1-6"; sha256="16aapvz9j81lvi5ryj41bvn3wf51b0gynnzs0jpvva4m3mvzw6an"; depends=[diagram]; }; Rraven = derive2 { name="Rraven"; version="1.0.13"; sha256="0nlqr1hzbzbz4rb3hjy01iw8czhaqvwmy9hh728fgl5vajwqwn8g"; depends=[NatureSounds pbapply seewave tuneR warbleR]; }; Rrdap = derive2 { name="Rrdap"; version="1.0.6"; sha256="0lwp80622xnjgfljds0fs64l3c30ijmz495v48j564za4ss4yx9q"; depends=[curl rjson stringr]; }; - RsSimulx = derive2 { name="RsSimulx"; version="2.0.2"; sha256="04z71idb9jhm7cmgm3vwr6y9wlji2q82gd3f73sy0n9sg0cl60dj"; depends=[ggplot2 gridExtra]; }; - Rsagacmd = derive2 { name="Rsagacmd"; version="0.2.0"; sha256="1z92fk7j2n6zzplfc3xlhnaynn2i2cp6cq6hw621fmnf09ccq005"; depends=[foreign generics processx raster rgdal rlang rvest sf stars stringr terra tibble]; }; + RsSimulx = derive2 { name="RsSimulx"; version="2023.1"; sha256="0j48d94r68lzjpkak67q455q09ivp9fnkcsbqh8qziikzglf2ac5"; depends=[ggplot2 gridExtra]; }; + Rsagacmd = derive2 { name="Rsagacmd"; version="0.4.0"; sha256="079xd2g76axdfqmkaz11xldqkadiaqszs6nsh9v8b7f758ffd31v"; depends=[foreign generics processx rlang rvest sf stars stringr terra tibble]; }; Rsampling = derive2 { name="Rsampling"; version="0.1.1"; sha256="14rp3j7iaii4rc3jkbijmbgvlagxxqjkz3vvfwwpxix43rsi8zsk"; depends=[]; }; Rsconctdply = derive2 { name="Rsconctdply"; version="0.1.3"; sha256="12xc1laxgivv4szp8341pvhmxnzzzzc2s4jhnqsqrbx71lbd9szg"; depends=[dplyr rjson rsconnect]; }; Rserve = derive2 { name="Rserve"; version="1.8-11"; sha256="118vmylh14avsq4ckx0933hk8j200jkbz88j5rfyx31z95l1vywx"; depends=[]; }; @@ -4626,11 +4681,12 @@ in with self; { Rtwalk = derive2 { name="Rtwalk"; version="1.8.0"; sha256="0zxf66lsfq8by40flv34xzd5yy0wa1ah9li1d0h7f0yh9nbwhxl5"; depends=[]; }; Runuran = derive2 { name="Runuran"; version="0.38"; sha256="1fjr9pbjih6ahbsd557p3d5j8klj11wnnn7jkhjcry1spwlzdkhr"; depends=[]; }; Rvcg = derive2 { name="Rvcg"; version="0.22.1"; sha256="16rr2kqw7lqb7m01pwn496zf2nr25gm6wcncz44kszjzzmv2xanv"; depends=[Rcpp RcppArmadillo RcppEigen]; }; + Rveg = derive2 { name="Rveg"; version="0.1.1"; sha256="02bybiam93yafzwmxl4v34wv2bb60fwl9n053f9h7q1s4bs7y54m"; depends=[dplyr]; }; Rvmmin = derive2 { name="Rvmmin"; version="2018-4.17.1"; sha256="0kl1h4mlvb1bngb40r3dhrjkpnh3lsqddis65hbjzm2pzz20l02m"; depends=[optextras]; }; Rwave = derive2 { name="Rwave"; version="2.6-5"; sha256="1r72kcc5f9k38ks39nh9x1y7k1kxrbyv7lywqpsy7wknnddzg7kc"; depends=[]; }; Rwclust = derive2 { name="Rwclust"; version="0.1.0"; sha256="0c7q2i9n22sqj3wq9m0j49y5h14848myjbixrdkic8lvv91dm438"; depends=[checkmate Matrix]; }; RweaveExtra = derive2 { name="RweaveExtra"; version="1.0-0"; sha256="1jg4dn2x8d74z0wy9j9azvb8f1g0449ji5yl6g964lv2g3fpq6qh"; depends=[]; }; - Rwhois = derive2 { name="Rwhois"; version="1.0.12"; sha256="0s0fby2rfa0cpzhw0syjc4dc54ni8r3mg0vnk4wrpcj2pl28b920"; depends=[stringr]; }; + Rwhois = derive2 { name="Rwhois"; version="1.0.14"; sha256="0fzhbpd30nsbjsdk6bfrxzxh677fw1jv40ckiqrrxd62krfrxnh2"; depends=[stringr]; }; Rwofost = derive2 { name="Rwofost"; version="0.8-3"; sha256="1x6ia49xrdqcxilq12g47gd00smm5jdrq7xavndd3dcnvl1nqk1y"; depends=[meteor Rcpp]; }; Rwtss = derive2 { name="Rwtss"; version="0.9.2"; sha256="0lxjzznigk4i8lzga88m0i6x2j5c5q79rvs5knd762ycfxwlmx6w"; depends=[assertthat dplyr geosphere ggplot2 httr jsonlite lubridate magrittr purrr reshape2 stringr tibble zoo]; }; RxnSim = derive2 { name="RxnSim"; version="1.0.3"; sha256="0fi4aic2brfbl6rsnnfwqq7l8ygvlmr98w0v749l3djpgn7sfrig"; depends=[data_table fingerprint rcdk rJava]; }; @@ -4654,7 +4710,7 @@ in with self; { SAMM = derive2 { name="SAMM"; version="1.1.1"; sha256="175jk3s9w68ccw1h019380lp9cajfsy3zigcnplp87pcn3qg7x2i"; depends=[Rcpp RcppArmadillo]; }; SAMTx = derive2 { name="SAMTx"; version="0.3.0"; sha256="18r03w74fcra3c0xa76jnkkms9pjirdmgb2k1dnz7symqf9cvc5l"; depends=[BART]; }; SAMUR = derive2 { name="SAMUR"; version="1.1"; sha256="1ihxr455hxpk3mz113j7ai36lw9i4v60yd4x50j7npzcpq5r0mwk"; depends=[Matching]; }; - SAMtool = derive2 { name="SAMtool"; version="1.5.2"; sha256="1rcx61d0rma6dr0s59xx51n109s19fbrryr6b5qixbjh09qs7jh2"; depends=[corpcor dplyr gplots MSEtool pbapply RcppEigen rmarkdown snowfall TMB vars]; }; + SAMtool = derive2 { name="SAMtool"; version="1.5.3"; sha256="0k1d8k9xfd04c5d4r8nqv5w0qdh10gmjqcknzpz1ipk3c2nc9h8z"; depends=[dplyr gplots MSEtool pbapply RcppEigen rmarkdown snowfall TMB vars]; }; SAP = derive2 { name="SAP"; version="1.0"; sha256="129szqkh4snlqn5q09yaqf6sd04nvai3a0ifk0b36yrqj92v6fd1"; depends=[BSDA]; }; SAPP = derive2 { name="SAPP"; version="1.0.8"; sha256="1lb148s8rdx1phmx8ihncgb45iqxzracxznys7zyzs8qcf6hm5wq"; depends=[]; }; SAR = derive2 { name="SAR"; version="1.0.3"; sha256="1cnf0hsq82lzssvz5xs2abvnrjxda0g6mjx70a1j223zdwjqmw64"; depends=[AzureRMR AzureStor dplyr httr jsonlite Matrix R6 Rcpp RcppArmadillo RcppParallel]; }; @@ -4685,11 +4741,10 @@ in with self; { SCEnt = derive2 { name="SCEnt"; version="0.0.1"; sha256="0nyx0j0ab8wzl9mm5ib0p2zxq9xis2p850b2w3jdm9xn3ncm6wl1"; depends=[entropy tibble]; }; SCGLR = derive2 { name="SCGLR"; version="3.0"; sha256="10hsvcjgsycap6wkp06snp2zab1ppsp78kyncpbjnm3vp84qm0nz"; depends=[ade4 expm Formula ggplot2 Matrix pROC]; }; SCI = derive2 { name="SCI"; version="1.0-2"; sha256="1jvzkdv15ifgf6a3zjfzzcgw2y2vg0wp7yhiamiaqp8xkm142w49"; depends=[fitdistrplus lmomco]; }; - SCIBER = derive2 { name="SCIBER"; version="0.1.6"; sha256="1hd17i2xj249lhvgyqf1my9w1pg6nn7d2kyijkrbkpcml3fqmk7y"; depends=[dplyr]; }; + SCIBER = derive2 { name="SCIBER"; version="0.2.2"; sha256="0mnpqwimvwln29lha7ylrrhd9j7nhlgkrg78vwkgqjmni8p6b351"; depends=[dplyr]; }; SCINA = derive2 { name="SCINA"; version="1.2.0"; sha256="1gv9widjwvk5j535r1zx6f41ylpa2r4168ya580llgblx85z402d"; depends=[gplots MASS]; }; SCMA = derive2 { name="SCMA"; version="1.3.1"; sha256="0j0np99mcr8vgpcg664769gdb3rxm665h4jgj3zplihbh5ihxfj1"; depends=[]; }; SCOPRO = derive2 { name="SCOPRO"; version="0.1.0"; sha256="08pxr7kn2d77g614s6rb2qbd8g5vf6b2w1pwcp9i191b524n844p"; depends=[ggplot2]; }; - SCOR = derive2 { name="SCOR"; version="1.1.1"; sha256="0srkn72g1v7hwms68pjmq5sj562blqn27gi628q6q6zlirbmfb9g"; depends=[doParallel foreach iterators]; }; SCORNET = derive2 { name="SCORNET"; version="0.1.1"; sha256="13aibikvrc3ril4gqki4fk4y7ha85bniqabmaifzbr1dw5xy2wxm"; depends=[doParallel foreach Matrix pracma Rcpp RcppArmadillo survival]; }; SCORPION = derive2 { name="SCORPION"; version="1.0.1"; sha256="1wixh89b591kwkncm2kbl1piai64wgnbfr106ylwlqwhj4a5xhjg"; depends=[cli igraph irlba Matrix pbapply RANN RhpcBLASctl]; }; SCORPIUS = derive2 { name="SCORPIUS"; version="1.0.8"; sha256="0a9gl5fk3v1nmh5vd228pp2six9r6qy296w5xzhcc5by706r5xq7"; depends=[dplyr dynutils dynwrap ggplot2 lmds MASS Matrix mclust pbapply pheatmap princurve purrr ranger RANN RColorBrewer reshape2 tidyr TSP]; }; @@ -4700,22 +4755,22 @@ in with self; { SCVA = derive2 { name="SCVA"; version="1.3.1"; sha256="1gdicpnbr8bdgrbwwslpwpzw2adpp94p8nhsrkdx0bjlpfhd4g9h"; depends=[ggExtra ggplot2 plotly scales]; }; SCperf = derive2 { name="SCperf"; version="1.1.1"; sha256="1kqi3sv9ds58l20pdcnjrrbf7fin82j73yqj5rbx4kjdw560ylb2"; depends=[]; }; SCpubr = derive2 { name="SCpubr"; version="1.1.2"; sha256="17z62w7v9km7gd9z03lp9ni7076cp12hsi5h8jjf0bkb8h437arq"; depends=[]; }; - SCtools = derive2 { name="SCtools"; version="0.3.2.1"; sha256="0pw0kpqv4hzskfigl7ch509jj2cmp674l9ms2ivbx3sxq9l0hhj1"; depends=[cvTools dplyr furrr future ggplot2 magrittr purrr stringr Synth]; }; SDAR = derive2 { name="SDAR"; version="0.9-55"; sha256="1a1dy4wpzhfaqxv4x8knazh4kjx042rnkmvxf62r6wkgbfvq4r6b"; depends=[grImport2 linbin readxl]; }; SDAResources = derive2 { name="SDAResources"; version="0.1.1"; sha256="13zb8sx7913wpj1jhi5sb0ps8fgzxfvjx75p218n166w54rxjqjs"; depends=[]; }; SDCNway = derive2 { name="SDCNway"; version="1.0.1"; sha256="0zmjc3xh4qvwyrq4ma2k6q08f4ny4iqnl5a640pj17jk8awzwbg0"; depends=[dplyr ggplot2 MASS plyr Rdpack]; }; SDEFSR = derive2 { name="SDEFSR"; version="0.7.22"; sha256="10rxq2y7a9rbzgl5s5fdh93jm4w5kqbyyflw5xfsdwymjj9p4b7m"; depends=[foreign ggplot2 shiny]; }; - SDGdetector = derive2 { name="SDGdetector"; version="2.7.1"; sha256="1mywjirh10fwl13dh6ba6xs64nx158c6b9c60xzd3a1fgslpv06k"; depends=[dplyr ggplot2 magick magrittr rnaturalearth scales stringr tidyr]; }; - SDLfilter = derive2 { name="SDLfilter"; version="2.3.1"; sha256="0rbq9x6805l4pm66lqa8lc1p81nps9ndbmalhfzhjibxd3d4mgyn"; depends=[data_table dplyr emmeans geosphere ggmap ggplot2 ggsn gridExtra lubridate maps plotKML pracma sf stars]; }; + SDGdetector = derive2 { name="SDGdetector"; version="2.7.3"; sha256="0gm23f0xqw2cgig44d17qw2mfp685bz0dr8wrly4r90w44l121z9"; depends=[dplyr ggplot2 magick magrittr rnaturalearth scales stringr tidyr]; }; + SDLfilter = derive2 { name="SDLfilter"; version="2.3.2"; sha256="197y4kvjn07c3jnx3ayr496h70r87r7f4c7r0swcdkj9ir93dz4g"; depends=[data_table dplyr emmeans geosphere ggmap ggplot2 ggsn gridExtra lubridate maps plotKML pracma sf stars]; }; SDMPlay = derive2 { name="SDMPlay"; version="2.0"; sha256="1qdvpa57p4p3949rjmvvvz41a3hm3jb34dnn8s2pi04rzrjkys0f"; depends=[dismo raster]; }; - SDMtune = derive2 { name="SDMtune"; version="1.2.1"; sha256="0farxd87b73ly3i844bj6gbpypf143vwf25vb1b77f0lldyhb5sc"; depends=[cli dismo gbm ggplot2 jsonlite maxnet nnet randomForest Rcpp rlang rstudioapi stringr terra whisker]; }; - SDPDmod = derive2 { name="SDPDmod"; version="0.0.1"; sha256="17wyymjip84dxpncz6kqg32wlwn5qgw7x54djg301wqmvpjyl2y8"; depends=[Matrix plm RSpectra sf sp spdep]; }; + SDMtune = derive2 { name="SDMtune"; version="1.3.0"; sha256="0b5xpmqmm4zxj5l915xi04qdxv8gi8k0wvqbwa6nllw9yrjf5kvv"; depends=[cli dismo gbm ggplot2 jsonlite maxnet nnet randomForest Rcpp rlang rstudioapi stringr terra whisker]; }; + SDPDmod = derive2 { name="SDPDmod"; version="0.0.3"; sha256="1xasqx6alza9290a97an2dqnsab7x5av8nhv2zczi670443k2pcp"; depends=[Matrix plm RSpectra sf sp spdep]; }; SDPrism2D = derive2 { name="SDPrism2D"; version="0.1.1"; sha256="1f1k6lk0fh9dz11703fpbmvjl2gyq4y7l4khigl1h69j9xv97yf3"; depends=[]; }; SDT = derive2 { name="SDT"; version="1.0.0"; sha256="1jwpfd1pnzy9wcl90qv5bgwi19shsw9064dvml9zwbif8yw8dzjj"; depends=[quadprog]; }; SDaA = derive2 { name="SDaA"; version="0.1-5"; sha256="1gs29jaj46i2bhbnpa0s6bhdrylz1s6wnif5cyc5m7xl19s413gb"; depends=[]; }; SE_EQ = derive2 { name="SE.EQ"; version="1.0"; sha256="09fqx2rcqpiv072l6gqgfz9pdhas98q4kkkm7m4y28k13q2gicgl"; depends=[MASS]; }; SEA = derive2 { name="SEA"; version="2.0.1"; sha256="03iqvs95v2q252dl62z39i0nwg8n44g1p9ljbmb1nx6zq98fd7bw"; depends=[data_table doParallel foreach KScorrect MASS shiny]; }; SEAGLE = derive2 { name="SEAGLE"; version="1.0.1"; sha256="1j5wjjw7fl2m4h9brg8dyahf1vmn9wgc7jaajaz6z1xqm6fc0d9k"; depends=[CompQuadForm Matrix]; }; + SEAHORS = derive2 { name="SEAHORS"; version="1.7.0"; sha256="1vi7v3ziqcq9z25sx1367n0isj0f8yf7c9pzvl97kfhyj0fwyj2c"; depends=[dplyr DT ggplot2 gridExtra htmlwidgets MASS plotly raster readxl rmarkdown shiny shinyjs shinythemes shinyWidgets stringr viridis]; }; SECFISH = derive2 { name="SECFISH"; version="0.1.7"; sha256="0yd9k6anz9g4psg5kh1bhp0lr1i4y7in1m0mxk4qp14nl1zqy4fy"; depends=[ggplot2 Hmisc optimization]; }; SECP = derive2 { name="SECP"; version="0.1.5"; sha256="01nq30ap06n2inqb59qmv4wkc9wh1hdkyfblqs0inn55842d009z"; depends=[SPSL]; }; SEERaBomb = derive2 { name="SEERaBomb"; version="2019.2"; sha256="0rlah68jbaw4qbqq5rnlrm6m9ckz7igbsay6iq1yvk4gy24p9bfh"; depends=[DBI demography dplyr forcats ggplot2 labelled LaF mgcv openxlsx plyr purrr Rcpp readr reshape2 rgl RSQLite scales stringr survival tibble tidyr WriteXLS]; }; @@ -4723,7 +4778,7 @@ in with self; { SEL = derive2 { name="SEL"; version="1.0-3"; sha256="0nkr6m4aq4i0vq19v04lfkjmmjii1dfqsj1mfwagwsw6ain1jarr"; depends=[lattice quadprog]; }; SELF = derive2 { name="SELF"; version="0.1.1"; sha256="1yafjhxwsanr33dqy7w9x61ghldr29s8k6h68idq6nnfb77ghjyx"; depends=[bnlearn CompareCausalNetworks data_table Rcpp xgboost]; }; SEMID = derive2 { name="SEMID"; version="0.4.0"; sha256="1888l4m7d944j4cmh6l19fjmrsh6r6xlfwjzpvyanxd769xmyfzc"; depends=[igraph R_methodsS3 R_oo R_utils]; }; - SEMgraph = derive2 { name="SEMgraph"; version="1.1.3"; sha256="0jvnz6sf8m19x22v3fm5nxrwj26j5jglq3kkrgi2napzwy3m2f2j"; depends=[boot corpcor dagitty flip gdata ggm glmnet graph igraph lavaan leaps mgcv pbapply protoclust RBGL Rgraphviz]; }; + SEMgraph = derive2 { name="SEMgraph"; version="1.2.0"; sha256="1v106i7wzaq0656wzngj1xhh9ivs3kc7kyj78f44x6fi3brs71ab"; depends=[boot corpcor dagitty flip gdata ggm glasso glmnet graph igraph lavaan mgcv pbapply protoclust RBGL Rgraphviz]; }; SEMsens = derive2 { name="SEMsens"; version="1.5.5"; sha256="0jgc78xxjbm2b1l0b72s84y1dmg9vvw23y07p4gh66jzl07dh5gf"; depends=[lavaan]; }; SEofM = derive2 { name="SEofM"; version="0.1.0"; sha256="0662f4ayr05h33myxbfal682fxfwpl3a94kv4bzc8hil9bcqcznf"; depends=[]; }; SEset = derive2 { name="SEset"; version="1.0.1"; sha256="127z85m95xn46s7lk3sdzrs73mi7pa2smx9r80fnl678f2kyz6lm"; depends=[combinat Matrix Rdpack]; }; @@ -4734,7 +4789,7 @@ in with self; { SGL = derive2 { name="SGL"; version="1.3"; sha256="055mx876ydg4kzvcm6rxfkxqz849zgzkzsskvrfgwj9fs1k6ja2v"; depends=[]; }; SGP = derive2 { name="SGP"; version="2.0-0.0"; sha256="0hkpn5pab9yfvly80fa8dlsz8xk32xrn3f2k1d29l2zfx3hdl9sg"; depends=[Cairo callr colorspace crayon data_table digest doParallel doRNG equate foreach gridBase gtools iterators jsonlite matrixStats plotly quantreg randomNames rngtools RSQLite sn toOrdinal]; }; SGPdata = derive2 { name="SGPdata"; version="26.0-0.0"; sha256="1l0d9l25nzmiwmwh0b3cm7c854h56ir0qmb70mi8jawnirmilpp2"; depends=[crayon data_table]; }; - SHAPforxgboost = derive2 { name="SHAPforxgboost"; version="0.1.1"; sha256="106nsf02b1w3yshb55lwnyw1rl1a60162v2wk8znjz3b4ln3mqj5"; depends=[BBmisc data_table ggExtra ggforce ggplot2 ggpubr RColorBrewer xgboost]; }; + SHAPforxgboost = derive2 { name="SHAPforxgboost"; version="0.1.3"; sha256="0b3h6py80a0dmb8f8j4h7a7d0k6ld8l0qr24r8pxxy7dbqbyxh5x"; depends=[BBmisc data_table ggExtra ggforce ggplot2 ggpubr RColorBrewer xgboost]; }; SHELF = derive2 { name="SHELF"; version="1.8.0"; sha256="05kr2y5wqbpw3ajf5pbhhfyqv7n3zw3kb7ba2j24sr62jlin3avv"; depends=[ggExtra ggplot2 ggridges gridExtra Hmisc MASS rmarkdown scales shiny shinyMatrix tidyr]; }; SHT = derive2 { name="SHT"; version="0.1.8"; sha256="03mzjm0hx1i8jz7gam19zyr5w6whwk7a3gfid68h5hj8x60p04wx"; depends=[flare pracma Rcpp RcppArmadillo Rdpack]; }; SI = derive2 { name="SI"; version="0.2.0"; sha256="0i6kpaw5yk39skm77nf56ai25clkparz3l8qx0223jrmdqbf97b7"; depends=[]; }; @@ -4743,7 +4798,7 @@ in with self; { SIBERG = derive2 { name="SIBERG"; version="2.0.3"; sha256="1d8kx5m86qil50d8fhwn7lwaigdnppzk0cwyh4hv54lwffpclnki"; depends=[mclust]; }; SIDES = derive2 { name="SIDES"; version="1.16"; sha256="0hp0dkdmc5srqjbpvcq2ynwzrfdx06xn4s4a7a3wlssmn4indj69"; depends=[doParallel foreach MASS memoise multicool nnet survival]; }; SIGN = derive2 { name="SIGN"; version="0.1.0"; sha256="1ak4zv5a50iknrxpfw1iffn8gv8mc0rz2gk96nzky9zx6li5drhk"; depends=[GSVA survcomp survival]; }; - SIHR = derive2 { name="SIHR"; version="1.1.0"; sha256="1pdj66czhijwzbxb1vyn8x8avrlhci30wz5xj94576893wl1m1ii"; depends=[CVXR glmnet]; }; + SIHR = derive2 { name="SIHR"; version="2.0.1"; sha256="1pn59ydm4rr8jkqkrfrrip92pic8710qaazc3ccw6pvhvw20n46a"; depends=[CVXR glmnet]; }; SILGGM = derive2 { name="SILGGM"; version="1.0.0"; sha256="1lhmisgg2zbfksl7czz0fqag3732gkjc44n615ipxbdi2pvnc7m0"; depends=[glasso MASS Rcpp reshape]; }; SILM = derive2 { name="SILM"; version="1.0.0"; sha256="1iaivpdx18djfm5dqak0q9kfl1xfrnx3gk5x9a4y53h1d7jhl9p6"; depends=[glmnet hdi scalreg SIS]; }; SIMEXBoost = derive2 { name="SIMEXBoost"; version="0.1.0"; sha256="0gxw8xb2hvsizawfd863c268q5wq1cdsmdsand5iys2b9gry1pmq"; depends=[MASS]; }; @@ -4791,7 +4846,7 @@ in with self; { SMME = derive2 { name="SMME"; version="1.1.1"; sha256="12z02njv81d86275dv1l2f93y1i4cnq9lxk0yyaacgj3bnpdcm7h"; depends=[Rcpp RcppArmadillo]; }; SMMT = derive2 { name="SMMT"; version="1.1.0"; sha256="1zjvdjz75qhfdm4maiq2rw9bzqa2xls15vpr3556iba5aq4hysv7"; depends=[curl dplyr rvest tibble XML xml2]; }; SMNCensReg = derive2 { name="SMNCensReg"; version="3.1"; sha256="10nik348b6vcmwhj5scjvkjwi86fih3bqkgpv7qxxa8jx45ds52n"; depends=[Matrix PerformanceAnalytics]; }; - SMOTEWB = derive2 { name="SMOTEWB"; version="0.1.5"; sha256="07xxbpi5bmvryggvag9dnvh53x2w8dljif4s4j3w9w8wpna24i1n"; depends=[FNN rpart]; }; + SMOTEWB = derive2 { name="SMOTEWB"; version="1.0.1"; sha256="0pgn4v08nf74v9p79901268sj97gl5ml0723hs948m9ajkdf1d2x"; depends=[FNN RANN Rfast rpart]; }; SMPracticals = derive2 { name="SMPracticals"; version="1.4-3"; sha256="0zxq84f9i3b86xx6msb25b61gyj9k09iab2b7wg4d93yas9qzayf"; depends=[ellipse MASS nlme survival]; }; SMR = derive2 { name="SMR"; version="2.0.2"; sha256="1lds6sp9szlrzkfxp3q24g4y4hd75qp4439hrn2k4hzsz84s7g3y"; depends=[]; }; SMUT = derive2 { name="SMUT"; version="1.1"; sha256="029ishj3jfq957bbkb2xw4jj0qpm4dasb8vpdik43pvd670mgq5s"; depends=[MASS Rcpp RcppEigen SKAT]; }; @@ -4811,14 +4866,15 @@ in with self; { SOMEnv = derive2 { name="SOMEnv"; version="1.1.2"; sha256="03g1c9ip0bmc5zhnzami3f525m9ic6v5gdhaxc8s7f1nxjf2fcdy"; depends=[colourpicker dplyr kohonen openair plyr rlist shiny shinycssloaders shinycustomloader]; }; SOMbrero = derive2 { name="SOMbrero"; version="1.4-1"; sha256="0b9w8xr067hz2lzvxn7xz3llzhyqynskh08rsx7d73gnm56kdcp2"; depends=[ggplot2 ggwordcloud igraph interp markdown metR scatterplot3d shiny]; }; SOP = derive2 { name="SOP"; version="1.0"; sha256="1c9haq0ds90rwhvmdicaxhzf7vz2m343491sw9qw7w7fbs4fn9fp"; depends=[MASS]; }; - SOPC = derive2 { name="SOPC"; version="0.0.4"; sha256="09j8vka00l51m3hyxavq34hyjllwzkd4x0h0xqkyr2gc9kqf97ih"; depends=[elasticnet]; }; + SOPC = derive2 { name="SOPC"; version="0.1.0"; sha256="01gsszas6prl3gr2x36p3yqdjph5d0wzzbbxwq52gif8jkfmhzmr"; depends=[elasticnet magrittr]; }; SOPIE = derive2 { name="SOPIE"; version="1.6"; sha256="1q6991l1wldywv685dv1pkd8ma8jlx4inqr6p1fw1xr7ymm8b1q2"; depends=[ADGofTest circular]; }; SOR = derive2 { name="SOR"; version="0.23.1"; sha256="1accs4bqy080nfmgkdg7bgamdrcwcn01y6nydvvq12w3v8asdvwh"; depends=[Matrix]; }; SP2000 = derive2 { name="SP2000"; version="0.2.0"; sha256="01wrc7p36js20jv04zhphj2vq7qqfgxmrzic066wij0c0mnh0xn5"; depends=[DT jsonlite pbmcapply purrr rlist tibble urltools XML xml2]; }; SPADAR = derive2 { name="SPADAR"; version="1.0"; sha256="0xzhcy5nglwx9j2jkm3i9xj1iw1y9wbf6rwfjyhpiwwq6qn8mn5r"; depends=[mapproj RCEIM]; }; + SPARRAfairness = derive2 { name="SPARRAfairness"; version="0.0.0.1"; sha256="0nyixdddqq3cmzj00gm637dm64iwb63mgp34wvmway5cflqr8yck"; depends=[cvAUC matrixStats mvtnorm ranger]; }; SPARSEMODr = derive2 { name="SPARSEMODr"; version="1.2.0"; sha256="0nshy1ppwsik7x1n0xp3wknm7fsl7c6y5523qnr41ijh18j165bq"; depends=[data_table future future_apply geosphere lubridate Rcpp tidyverse viridis]; }; SPARTAAS = derive2 { name="SPARTAAS"; version="1.1.0"; sha256="0l8ffpad4iq6jdgb4w4lhsq1v4ccjz1485hi018jwd76kr2m0h8z"; depends=[ape cluster colorspace crayon dplyr explor FactoMineR foreign fpc ggdendro ggplot2 htmltools htmlwidgets ks leaflet maptools mapview markdown plotly rgdal rstudioapi scatterD3 shiny shinydashboard shinyjqui shinyjs shinythemes shinyWidgets sp stringr tidyr]; }; - SPAS = derive2 { name="SPAS"; version="2020.1.1"; sha256="1bvnyxg3npxv63kikmr30jgc14f1s1a5vfh40qs50nbzq84pl6bx"; depends=[BB MASS Matrix msm numDeriv plyr RcppEigen TMB]; }; + SPAS = derive2 { name="SPAS"; version="2023.3.31"; sha256="1khblwl0b80c3hfizhcrlaxd2gcyjh7784gjc10mi21iy0q6pd2x"; depends=[MASS Matrix msm numDeriv plyr RcppEigen reshape2 TMB]; }; SPAtest = derive2 { name="SPAtest"; version="3.1.2"; sha256="1x5r4a6jnizhhazxywb2cf2jj2rx6rfynl6xcscmlix6n394xmxk"; depends=[]; }; SPB = derive2 { name="SPB"; version="1.0"; sha256="1j9x11wl86cqjdamcksha6db1fhcdina439nl3fl04aahj61zisb"; depends=[crayon knitr]; }; SPCALDA = derive2 { name="SPCALDA"; version="1.0"; sha256="1bmp2zz0favmpyp0ap8a2r1mg1nlan7zg5cj75drdnfpqlsn5vgl"; depends=[MASS]; }; @@ -4832,7 +4888,7 @@ in with self; { SPIAssay = derive2 { name="SPIAssay"; version="1.1.0"; sha256="0y02122lj4v95g62w84jmdjdazfz3rch133aid5sgakj2kv68cvh"; depends=[]; }; SPIGA = derive2 { name="SPIGA"; version="1.0.0"; sha256="0yd06x5rh1h1s4v9apj43c90rkz8m5kssbny7y5mnw5mr2acds9b"; depends=[GA]; }; SPINA = derive2 { name="SPINA"; version="4.1.0"; sha256="0x7y150iq072qqci2niqk7j8pvhcylb7kdvwambg1r1gi3ffycm9"; depends=[]; }; - SPLICE = derive2 { name="SPLICE"; version="1.1.0"; sha256="1jcw7nikla75aqfbplv2cklq19rfd8naamldvllzy2pjb879vqkk"; depends=[lifecycle SynthETIC zoo]; }; + SPLICE = derive2 { name="SPLICE"; version="1.1.1"; sha256="0nsh89qjp9gl0pgsvvink9bf3lgrkdvwyyyplb45lh47gh8f53rj"; depends=[lifecycle SynthETIC zoo]; }; SPORTSCausal = derive2 { name="SPORTSCausal"; version="1.0"; sha256="1ww1wi3kflwj1f5slfv0mfi7gbaj7y8rk1m3n15szpxb9zm8grks"; depends=[CausalImpact keras]; }; SPOT = derive2 { name="SPOT"; version="2.11.14"; sha256="15hgf0mx48z7yxb1zrhilc0lradcxak7wrbibq1r8yhxdf736zlr"; depends=[DEoptim ggplot2 glmnet laGP MASS nloptr plgp plotly randomForest ranger rgenoud rpart rsm]; }; SPOTMisc = derive2 { name="SPOTMisc"; version="1.19.52"; sha256="0l3css9hw75r76g2iykf2iih8lqnpzqqv2l734zix3agjr5cmmlh"; depends=[callr dplyr GGally ggplot2 keras magrittr Metrics mlr plotly RColorBrewer reticulate rlang rpart_plot rsample sensitivity smoof SPOT tensorflow tfdatasets]; }; @@ -4847,6 +4903,8 @@ in with self; { SPlit = derive2 { name="SPlit"; version="1.2"; sha256="0n9458sj5sw4k9qd11gvmqmjf9hy1hh0bwx1jzm6r901l1wbp7xi"; depends=[Rcpp RcppArmadillo]; }; SPmlficmcm = derive2 { name="SPmlficmcm"; version="1.4"; sha256="1acs3560a7h6xx286m40abr9b7i5qihn6wni8flj0biahmsszzx6"; depends=[nleqslv]; }; SPreg = derive2 { name="SPreg"; version="1.0"; sha256="1702i86qcbnqyi7r5wc2ciyk3l46329kmnrz91jzqq85z8cwgak1"; depends=[sn ucminf]; }; + SQI = derive2 { name="SQI"; version="0.1.0"; sha256="1mb1vzc8r52zr1rp4dakmsdayv47pqsbissljskl9c0nkhlah1kq"; depends=[dplyr FactoMineR matrixStats olsrr readxl]; }; + SQL = derive2 { name="SQL"; version="0.1.1"; sha256="1l949crb4fz13yxbr9gag7lfqs9ak3ab3i25g20mjrz6iix99hrd"; depends=[arrow DBI duckdb stringr]; }; SQLove = derive2 { name="SQLove"; version="0.0.2"; sha256="0r0jl56a75n6mqfaplihjrr5v4rfnc2z548phli3y2vhvzd74yb7"; depends=[DBI readr RJDBC]; }; SQMtools = derive2 { name="SQMtools"; version="1.6.2"; sha256="1qlbgc9mqx111p4dqld1zlvczi54nhl1yghlrchy9kr984a697x8"; depends=[data_table ggplot2 pathview reshape2]; }; SQN = derive2 { name="SQN"; version="1.0.6"; sha256="1p7h4id8xz6dh5nn2935pj5b82mcmpmm8mj32l5i4wgwnh1amphp"; depends=[mclust nor1mix]; }; @@ -4856,7 +4914,7 @@ in with self; { SRS = derive2 { name="SRS"; version="0.2.3"; sha256="0nx1sj91xkwplcmflq9c21zndaa4m21m9iqax86v947k070q48ql"; depends=[DT shiny shinybusy shinycssloaders vegan]; }; SRTsim = derive2 { name="SRTsim"; version="0.99.6"; sha256="1436lhpjbciln8xmr9sd7d0akh5kap8a9f0az7209c1zqc46i576"; depends=[concaveman dashboardthemes dplyr FNN ggplot2 ggpubr magrittr MASS Matrix matrixStats Morpho pdist plotly S4Vectors sf shiny shinyBS shinydashboard sp spatstat_geom spatstat_random viridis]; }; SRTtools = derive2 { name="SRTtools"; version="1.2.0"; sha256="1203i6nqclx0faxyvhdaapmfxy8h95jj83svxriqh1hpava5s1dy"; depends=[magrittr]; }; - SSBtools = derive2 { name="SSBtools"; version="1.4.4"; sha256="1aap2arvicr0y97jmjngfvxpamb1xwvpnyn1c2liiikkn4552ypg"; depends=[MASS Matrix stringr]; }; + SSBtools = derive2 { name="SSBtools"; version="1.4.6"; sha256="0l61vnisl2k56ddys033mh629l7rf3pgfrsx1fbz7v79c2586cjf"; depends=[MASS Matrix stringr]; }; SSDM = derive2 { name="SSDM"; version="0.2.8"; sha256="19l78dkjk76ababkd7xsfn0fy99khfa4i502q4vllpvch4cjz51c"; depends=[dismo e1071 earth gbm ggplot2 mgcv nnet poibin randomForest raster reshape2 rpart scales shiny shinydashboard shinyFiles sp spThin]; }; SSDforR = derive2 { name="SSDforR"; version="1.5.29"; sha256="02ia7p28pi9x3qmmyhidjh04rmnk99w2xvxzm23l19cwgk35s4ip"; depends=[Kendall MAd MASS metafor psych SingleCaseES TTR]; }; SSHAARP = derive2 { name="SSHAARP"; version="1.1.0"; sha256="0x8dinhhfk4q1cck7ms78f4k23430c4wyvlh2qclq0c83acjj4y9"; depends=[BIGDAWG data_table DescTools dplyr filesstrings gmt gtools stringr]; }; @@ -4871,6 +4929,7 @@ in with self; { SSRMST = derive2 { name="SSRMST"; version="0.1.1"; sha256="15s6vcmk8a27yw3rlfkajby6qkizp4sfiyi63m7hc86svd15x4wg"; depends=[survival survRM2]; }; SSRTcalc = derive2 { name="SSRTcalc"; version="0.3.3"; sha256="0m8qc1rzx3rag69m0jvanx524d49smkgnmj99fl54frzqh0ji1ss"; depends=[]; }; SSVS = derive2 { name="SSVS"; version="2.0.0"; sha256="002k10b3s4f84jiq7yjazmf7jz02z5l4g9ma0cyrdglbhhn3pbrd"; depends=[bayestestR BoomSpikeSlab checkmate ggplot2 rlang]; }; + SSplots = derive2 { name="SSplots"; version="0.1.1"; sha256="1ja631xdv2bhq7g8vs1cdg3b453zwz7h6rl9n1zma25v2z87gazi"; depends=[ggplot2 reshape2 zoo]; }; SSrat = derive2 { name="SSrat"; version="1.1"; sha256="1mmwla7yqqldv0s5hqljq2k2qljdfhq97m5128gvf3iy7n2yjzgj"; depends=[plyr sna]; }; SSsimple = derive2 { name="SSsimple"; version="0.6.6"; sha256="1nhwr9kvlx899wsgzp47ykq3awp7p54zcvsdmjjh9ch4qcm9q2sm"; depends=[mvtnorm]; }; STAND = derive2 { name="STAND"; version="2.0"; sha256="07wrpmvk0jjlghvrb37xyai48vgzj0fby8y09qdxsxdlgwqg1f3s"; depends=[survival]; }; @@ -4900,8 +4959,8 @@ in with self; { SVN = derive2 { name="SVN"; version="1.0.1"; sha256="0n93lqb1f2s2qvzc8lrcqmr0fhd57xqbi0ymrqqmll31ns679m92"; depends=[data_table igraph memoise]; }; SWIM = derive2 { name="SWIM"; version="1.0.0"; sha256="1pfrwxn4rha7a68b82lq18x6acyhjy9d8nn2hdwd9hhf576vkvhg"; depends=[ggplot2 Hmisc nleqslv plyr Rdpack reshape2]; }; SWMPr = derive2 { name="SWMPr"; version="2.4.3"; sha256="1yajch65iha19sxpqqij4ifxg12b5v59flibm8y4ial2fsid3c69"; depends=[data_table dplyr ggplot2 gridExtra httr lattice oce openair RColorBrewer reshape2 suncalc tictoc tidyr XML zoo]; }; - SWMPrExtension = derive2 { name="SWMPrExtension"; version="2.2.3"; sha256="1ig5wvf1h89v65xh1p69ab57flmlafjc02kgkcq3nfvm904ida4i"; depends=[broom dplyr EnvStats flextable ggimage ggplot2 ggthemes lubridate magrittr officer purrr RColorBrewer rlang scales sf SWMPr tidyr tidyselect]; }; - SWTools = derive2 { name="SWTools"; version="0.2.4"; sha256="1azhmsb00mndqza0cb0nslyyc1c2d9lc1y6p19ibisizqdr04sqx"; depends=[dplyr forcats ggmap ggplot2 httr hydroTSM jsonlite lubridate magrittr readr reshape2 rlang rmarkdown segmented sf sp stringr tibble tidyr zoo]; }; + SWMPrExtension = derive2 { name="SWMPrExtension"; version="2.2.4.2"; sha256="0vvmpghwrd66y92d9mb93i38siyd0jx6vlafbir1inkmpcpa62a0"; depends=[broom dplyr EnvStats flextable ggimage ggplot2 ggthemes lubridate magrittr officer purrr RColorBrewer rlang scales sf SWMPr tidyr tidyselect]; }; + SWTools = derive2 { name="SWTools"; version="1.0"; sha256="0mdkbzph4q989wi66xawkxca0zvpnnisk5wxbb91ylb05r84qpzf"; depends=[dplyr forcats ggmap ggplot2 httr hydroTSM jsonlite lubridate magrittr readr reshape2 rlang rmarkdown segmented sf sp stringr tibble tidyr zoo]; }; SYNCSA = derive2 { name="SYNCSA"; version="1.3.4"; sha256="0n9za302x638s666xs86zy94qch9wn0rln8xy6x9jymhhq9zn0kj"; depends=[FD permute RcppArmadillo vegan]; }; SafeVote = derive2 { name="SafeVote"; version="1.0.0"; sha256="1shv5l0grx3bsb0md5ann5dyh18w9i4q2nsar0qmd6cgl87ml4qn"; depends=[data_table dplyr fields forcats formattable ggplot2 knitr stringr]; }; SailoR = derive2 { name="SailoR"; version="1.2"; sha256="04qrnps40845ypapf37jg1c1g05nii6iwk4fv1x5xyca963hl5ii"; depends=[]; }; @@ -4909,13 +4968,13 @@ in with self; { SampleSize4ClinicalTrials = derive2 { name="SampleSize4ClinicalTrials"; version="0.2.3"; sha256="0s8svsgwh79rcwnskz0my2xqasyp370hn7aixqm9m6zqlvf42zc2"; depends=[]; }; SampleSizeMeans = derive2 { name="SampleSizeMeans"; version="1.2"; sha256="1djn143kq0qv3qasmrh6mwvaq0f6pqmz3yl5dbp19xfabl4829lf"; depends=[]; }; SampleSizeProportions = derive2 { name="SampleSizeProportions"; version="1.1"; sha256="0v0da7lgl9l73ji164qpm8dmysjhj8fx4ywnrm08nb46xgvd77pp"; depends=[]; }; - SamplerCompare = derive2 { name="SamplerCompare"; version="1.3.2"; sha256="09j06ycr749dbr6xbn5pxw7rp1p3cri40z38hf1kp5kvjxkkpy2w"; depends=[mvtnorm]; }; SamplingBigData = derive2 { name="SamplingBigData"; version="1.0.0"; sha256="0khrh7vfqqzpfp16x0ic5ml854wr2fj28cx95s6c0pz91hzlxkns"; depends=[]; }; SamplingStrata = derive2 { name="SamplingStrata"; version="1.5-4"; sha256="093x9rfilxhgf75p0rfsvglz0sg3imhdm15azxnjiblamyxbhfjm"; depends=[doParallel glue memoise pbapply SamplingBigData]; }; SanFranBeachWater = derive2 { name="SanFranBeachWater"; version="0.1.0"; sha256="18w2q3hzcrbmagnjyrn1ikwiyjh723mjb2vy0d8p1a6za0460p9w"; depends=[dplyr lubridate magrittr readr rvest tibble xml2]; }; SangerTools = derive2 { name="SangerTools"; version="1.0.2"; sha256="0ijxfa1h3mx86jk1s27qp7l4sz2d7i7llkwjvgnih9zjk0ybrdzw"; depends=[DBI dplyr ggplot2 ggtext ggthemes janitor magrittr odbc readr readxl rlang scales tibble]; }; ScaleSpikeSlab = derive2 { name="ScaleSpikeSlab"; version="1.0"; sha256="11n3pi15x77by0ikiawhnvlky6hp6qzwmsmp4l2hjng1469y7gg6"; depends=[Rcpp RcppEigen TruncatedNormal]; }; Scalelink = derive2 { name="Scalelink"; version="1.0"; sha256="0likfjw5999zd0kv1ykby78bl0x3xgh0v1yjssk7fnw1ghkxgdib"; depends=[Rcpp RcppParallel]; }; + ScatterDensity = derive2 { name="ScatterDensity"; version="0.0.1"; sha256="1dd9pgxq17j1gprf64vak3c6ncsgll73qya47jj116wil7z6jycz"; depends=[pracma Rcpp RcppArmadillo]; }; SciViews = derive2 { name="SciViews"; version="0.9-13.1"; sha256="0wm4vnjh65jxyg82m8l08kanl414qiaz0cc6srshb8sdx2sixkfi"; depends=[ellipse]; }; ScoreEB = derive2 { name="ScoreEB"; version="0.1.1"; sha256="0lvdywkw2g0xdgf7zj39h1903rd0jg2lzgqq7cfni11pniv6265n"; depends=[data_table]; }; ScorePlus = derive2 { name="ScorePlus"; version="0.1"; sha256="07hmrx1k256i4cs605j5bpg6brzypryxlcnjkzqak8cw4f26k24q"; depends=[combinat igraph igraphdata limSolve RSpectra]; }; @@ -4925,7 +4984,7 @@ in with self; { ScreenClean = derive2 { name="ScreenClean"; version="1.0.1"; sha256="0haanr05g4vwp5apncyzv8i3r61g4xf9ihm8ilcabcgpri56gpjk"; depends=[MASS Matrix quadprog]; }; ScriptMapR = derive2 { name="ScriptMapR"; version="0.0.3"; sha256="18pd23yqn3ai1yfl149081n42hbh0d57hm71s2lhm1z7a5ccjkmf"; depends=[dplyr formatR RCy3 stringr]; }; SearchTrees = derive2 { name="SearchTrees"; version="0.5.5"; sha256="1n0y91y1l657g61klbcjz82ddj2csdpnralc3rbk1hbwr4nxk069"; depends=[]; }; - SecDim = derive2 { name="SecDim"; version="2.2"; sha256="1v4rs4smid5jd2k181p1v1gk5w7yp28cw70jpb1gzw651qs1i4nm"; depends=[RcppArmadillo]; }; + SecDim = derive2 { name="SecDim"; version="3.2"; sha256="04l4qpw409dj5i494vmf7vmksis6910599gh259nbyv0pdfw5svr"; depends=[geosphere RcppArmadillo]; }; SecKW = derive2 { name="SecKW"; version="0.2"; sha256="13x9l6ncx8qszkcr7dpfzrk4zqj4w8z5lwd394437vl4xf1xv0k6"; depends=[fdrtool pracma]; }; SeedCalc = derive2 { name="SeedCalc"; version="1.0.0"; sha256="1p8ncf3l2zhpbbblpjagg8cg9gf7f2izdcgc48n1aq4f7bmjbqgk"; depends=[]; }; SeerMapper = derive2 { name="SeerMapper"; version="1.2.5"; sha256="1sjg0a5mvyvgzwpmbr3avm76cb9a45qdwvic665v4hhhsmf2x8xk"; depends=[maptools RColorBrewer rgdal SeerMapper2010East SeerMapper2010Regs SeerMapper2010West SeerMapperEast SeerMapperRegs SeerMapperWest sp stringr]; }; @@ -4979,12 +5038,12 @@ in with self; { ShapleyOutlier = derive2 { name="ShapleyOutlier"; version="0.1.1"; sha256="1qdb872cppq1dh33l75pxw4l7isp8nlsinbipygm989f1sf24xkh"; depends=[dplyr egg forcats ggplot2 gridExtra magrittr RColorBrewer Rdpack robustbase tibble tidyr]; }; ShapleyValue = derive2 { name="ShapleyValue"; version="0.2.0"; sha256="05ziyvvd81l0lx572in9snndnjdq8y4wkd8bxqs0y979l49yr6fd"; depends=[kableExtra MASS tidyverse]; }; SharpeR = derive2 { name="SharpeR"; version="1.3.0"; sha256="1xq2m53n2gc706lyd16gccllx2wgwdrqkfpf79jwwdmipqfqnxjx"; depends=[matrixcalc]; }; - SheetReader = derive2 { name="SheetReader"; version="1.0.2"; sha256="0dcxv1gl78s90q3jh7q45g216c11h9xiwcwqbmgsxl622ydss0dc"; depends=[Rcpp]; }; + SheetReader = derive2 { name="SheetReader"; version="1.1.0"; sha256="1l6agw4s7ak6cbgpidjz0rc1g34x4vv3731c8n5b5w1bj9s448kq"; depends=[Rcpp]; }; ShellChron = derive2 { name="ShellChron"; version="0.4.0"; sha256="1xb06zszwirn5l63qa9g99q9by58sdqpg8s6kiq70z5qqnlgiq5c"; depends=[dplyr ggplot2 ggpubr magrittr rtop scales tidyr zoo]; }; SherlockHolmes = derive2 { name="SherlockHolmes"; version="1.0.1"; sha256="162iw7qzi5cb73lawfvsnbq3cxgx0si9bz0avv60rrkzdb0xlr05"; depends=[devtools dpseg plot_matrix plotrix qpdf stargazer stringr tableHTML textBoxPlacement zoo]; }; ShiftConvolvePoibin = derive2 { name="ShiftConvolvePoibin"; version="1.0.0"; sha256="0pj3vynm8afns2kcwvmramxgbd0s2ksyyc5iha6p4dw2nz4hahc7"; depends=[]; }; ShiftShareSE = derive2 { name="ShiftShareSE"; version="1.1.0"; sha256="1zjqr0a6gs6k6mh8a5bzq48fz143g79p2k1ngcbrd9py8pdj0ss1"; depends=[Formula]; }; - ShinyItemAnalysis = derive2 { name="ShinyItemAnalysis"; version="1.4.2"; sha256="1npg1k41ds7x03hhx1f8qxm03n3zbkhv5dcm8r59lcnvrrf543cd"; depends=[difR dplyr ggplot2 lme4 magrittr mirt nnet psych purrr rlang rstudioapi tibble tidyr]; }; + ShinyItemAnalysis = derive2 { name="ShinyItemAnalysis"; version="1.5.0"; sha256="0n1fz79gb0s5pjl3rb2cd3nbvl4nf3xbk6cjhgrdifkzh705n5yg"; depends=[difR dplyr ggplot2 lme4 magrittr mirt nnet psych purrr rlang rstudioapi tibble tidyr]; }; ShinyLink = derive2 { name="ShinyLink"; version="0.2.2"; sha256="1idb95hdjllrhzm4fx1lrx3d2palbwjshm6ppjw916p7wg7y7wqn"; depends=[config DT fastLink gender ggplot2 ggvenn golem haven htmlwidgets jsonlite lubridate magrittr readxl shiny shinydashboard shinydashboardPlus shinyWidgets tidyr tidyselect vroom]; }; ShinyQuickStarter = derive2 { name="ShinyQuickStarter"; version="2.0.1"; sha256="19k46hwcab33l6dc43dp4hvvr366qh3z2jjw3b79x7f824wampnn"; depends=[colourpicker data_table dplyr fs ggplot2 miniUI plotly reshape2 shiny shinyalert shinydashboard shinyFiles shinyjs shinyWidgets stringi stringr styler]; }; ShinyTester = derive2 { name="ShinyTester"; version="0.1.0"; sha256="0wm4rl2p8ggw6v2chk9b6ygh5y8p8cwzbyra0nr0qr2ka97didp8"; depends=[dplyr purrr readr stringr tidyr visNetwork]; }; @@ -4992,13 +5051,13 @@ in with self; { ShrinkCovMat = derive2 { name="ShrinkCovMat"; version="1.4.0"; sha256="0iyri3syjk9xv49d87fdyhnxg5c5x827vnak8vgckkkp62sdln2q"; depends=[Rcpp RcppArmadillo]; }; SiER = derive2 { name="SiER"; version="0.1.0"; sha256="1ng6vnh30z6z1nvclsdzc9gdbrsrb2kqdqvs6fwm0j1zqlk12x0y"; depends=[]; }; SiMRiv = derive2 { name="SiMRiv"; version="1.0.5"; sha256="02b8y6fqlz8yrndkhjypmz2bg5abw435hzq668icrvf9s1a0r5fy"; depends=[mco raster rgdal sp]; }; - SiPhyNetwork = derive2 { name="SiPhyNetwork"; version="1.0.1"; sha256="06v3klkrnhyx6v1jdhgqzxkm5kbm2qn281rziv252p049jnasggc"; depends=[ape Rcpp rstackdeque]; }; + SiPhyNetwork = derive2 { name="SiPhyNetwork"; version="1.1.0"; sha256="11p50ysznrrjjsiba1ivsbfpqg3zd5dqmkvj9p574acwhqj3dflp"; depends=[ape lifecycle Rcpp rstackdeque]; }; SiZer = derive2 { name="SiZer"; version="0.1-8"; sha256="0hfhl2ihyxbg61knzij8i7ih1siap6dxfvbkwffxlaqpwrd8hgdn"; depends=[boot dplyr ggplot2 rlang tidyr]; }; Sie2nts = derive2 { name="Sie2nts"; version="0.1.0"; sha256="14s13v5y33kjgd779wrdzy985sp9qg0a0rh5qx66qs9gmff6r663"; depends=[ggplot2 Matrix plotly RCurl stringr]; }; Sieve = derive2 { name="Sieve"; version="1.0"; sha256="1sk2d7wsw394xv2agwc4rlsb0ajppap5iaj8z8vm5339cxmkz72x"; depends=[combinat glmnet Rcpp RcppArmadillo]; }; SigOptR = derive2 { name="SigOptR"; version="0.0.1"; sha256="1sylchhhz6kx4r8jx95cvsmjsacjh8pin7acf2fyw2a4nlx9r1a6"; depends=[httr jsonlite]; }; SigTree = derive2 { name="SigTree"; version="1.10.6"; sha256="18gh7azjr979ijc2y4yyskj24ay697rw3j7znc5p4a63s4vpxr9w"; depends=[ape MASS phyext2 phylobase phyloseq RColorBrewer vegan]; }; - SightabilityModel = derive2 { name="SightabilityModel"; version="1.5.2"; sha256="0i98gdk93ms2wlvah76ffhbc1143gfld6704ipi19wn5s16vli6a"; depends=[formula_tools Matrix msm mvtnorm plyr survey]; }; + SightabilityModel = derive2 { name="SightabilityModel"; version="1.5.3"; sha256="0haxw2za05f7q06fcipqlkbfscmbqvyn1g30fpbdcx96rgbdlj67"; depends=[formula_tools Matrix msm mvtnorm plyr survey]; }; Signac = derive2 { name="Signac"; version="1.9.0"; sha256="1a5gwfsr7fdc8405d23zxs9m54viik7m07xa1m1gs6argr13dzxq"; depends=[BiocGenerics data_table dplyr fastmatch future future_apply GenomeInfoDb GenomicRanges ggplot2 IRanges irlba Matrix patchwork pbapply Rcpp RcppRoll Rsamtools S4Vectors scales SeuratObject stringi tidyr tidyselect vctrs]; }; SignacX = derive2 { name="SignacX"; version="2.2.5"; sha256="0b38k3lxca985mqwvbbdczkjnn2x79kga05yw995gb6d20cjh96v"; depends=[igraph jsonlite lme4 Matrix neuralnet pbmcapply RColorBrewer RJSONIO Seurat]; }; SignifReg = derive2 { name="SignifReg"; version="4.3"; sha256="1f57zbc7746jr2hfgri29whw5nb7w8h9nwk2p2n851b1rf7q0mgp"; depends=[car]; }; @@ -5009,7 +5068,7 @@ in with self; { SimCop = derive2 { name="SimCop"; version="0.7.0"; sha256="1yrdy77a9h14v92c63ng8phi2ig73wy4xjjdb75322grc0bd3jq6"; depends=[quadprog]; }; SimCorMultRes = derive2 { name="SimCorMultRes"; version="1.8.0"; sha256="0gxrhsy8dkp2iyzh2x9z6m6cxx6mxiwinh86dk6wwiqr2zkasn9w"; depends=[evd]; }; SimCorrMix = derive2 { name="SimCorrMix"; version="0.1.1"; sha256="1mx8xkg1nbh4x4xr6m672zyg00s3lky2sy5mz7dfkw40vz2bwi53"; depends=[BB ggplot2 MASS Matrix mvtnorm nleqslv SimMultiCorrData triangle VGAM]; }; - SimDesign = derive2 { name="SimDesign"; version="2.10.1"; sha256="0sab1cbm3sj3mnrrb91vrzv0n2mhzvxfms9krh0nqrd7f47mb83p"; depends=[beepr dplyr foreach future future_apply pbapply progressr RPushbullet sessioninfo]; }; + SimDesign = derive2 { name="SimDesign"; version="2.11"; sha256="1wbvv38zn3x7b7dd8d5ih6sysihh82apw4vbrzglhyxvdaif2h2j"; depends=[beepr dplyr foreach future future_apply pbapply progressr RPushbullet sessioninfo]; }; SimDissolution = derive2 { name="SimDissolution"; version="0.1.0"; sha256="1rdsxykh740h22ln635m0ysm00pdw94vp7qhgify4mcvc46c3632"; depends=[alabama dplyr mvtnorm]; }; SimEUCartelLaw = derive2 { name="SimEUCartelLaw"; version="1.0.3"; sha256="1n0dvhwqyirb6myc30ydvskb1k7hlx4nkqy15gpx87zl01vpn8fz"; depends=[plot3D]; }; SimEngine = derive2 { name="SimEngine"; version="1.2.0"; sha256="1jga2iqdn0n9pym93addwhn3swn61dm1gh282isw2ssbqchh7arl"; depends=[data_table dplyr magrittr pbapply rlang]; }; @@ -5017,7 +5076,6 @@ in with self; { SimInf = derive2 { name="SimInf"; version="9.5.0"; sha256="07yavv1qaahxgkni5rrnhpzspkb6g185njiyh3aay4pfiyn5945l"; depends=[digest MASS Matrix]; }; SimJoint = derive2 { name="SimJoint"; version="0.3.9"; sha256="1bv7r9mgkcr24azblpfi3fiyay7kflxhq4am46qy32pa1vsfyadf"; depends=[Rcpp RcppArmadillo RcppParallel]; }; SimMultiCorrData = derive2 { name="SimMultiCorrData"; version="0.2.2"; sha256="0brszbqxf40y65xp96c5hp7hhvz3gv0xlg93r5ik8qdh0bn0y1sw"; depends=[BB GenOrd ggplot2 Matrix nleqslv psych triangle VGAM]; }; - SimPhe = derive2 { name="SimPhe"; version="0.2.0"; sha256="01kzypahw41jk8s2c92h0k9w32yaicis07wb6k8qlqcmv0zj8xry"; depends=[]; }; SimRAD = derive2 { name="SimRAD"; version="0.96"; sha256="0ivvd3k04v1akbblxcjhlyc315z3ig7wjs0g3b37lvlfp54ppbrg"; depends=[Biostrings ShortRead zlibbioc]; }; SimRVPedigree = derive2 { name="SimRVPedigree"; version="0.4.4"; sha256="0z7wwwl814bwaijkmg9wcdj5xisiamc9yqypmk0hzj950569aj8p"; depends=[dplyr kinship2]; }; SimReg = derive2 { name="SimReg"; version="3.3"; sha256="1liwwbi3zqrcbqx5przdlzhnq7jvyjd6yhaxalhwggzf9zv7w8ci"; depends=[ontologyIndex ontologyPlot ontologySimilarity Rcpp]; }; @@ -5038,7 +5096,7 @@ in with self; { SingleCaseES = derive2 { name="SingleCaseES"; version="0.7.1"; sha256="0nafdl75svl0m07608jrsizn9gnnpvpvz74qs7qfsqlrpdnjmw9c"; depends=[dplyr magrittr purrr rlang tidyr tidyselect]; }; SiteAdapt = derive2 { name="SiteAdapt"; version="1.1.0"; sha256="1k79j29d92a8m578xj61iavljikksdmjr2vlzwmdvxpa6rp1i2ff"; depends=[ggplot2 ggpubr glmulti hydroGOF hyfo RColorBrewer solaR]; }; SitesInterest = derive2 { name="SitesInterest"; version="1.0"; sha256="06l6i6jnzwj683cvd9a9dg4nlb1wy1v3wb561y97a25bikm3mfy6"; depends=[plotrix]; }; - SixSigma = derive2 { name="SixSigma"; version="0.10.3"; sha256="0n3cpl4104p8p9fwmkybfrgr02gvd66cszp7rjpp0ixspxjc6fls"; depends=[e1071 ggplot2 lattice nortest reshape2 scales testthat xtable]; }; + SixSigma = derive2 { name="SixSigma"; version="0.11.0"; sha256="17y039k8q1nh1j2v8z8wy5z2l984d27vwh1szydc6w5wzv1b7cg4"; depends=[e1071 ggplot2 lattice nortest reshape2 scales testthat xtable]; }; SizeEstimation = derive2 { name="SizeEstimation"; version="1.1.1"; sha256="1rz57y76hzp880511kzm7nhxf201n0dr7ccip6slrjz784dl7s27"; depends=[MCMCpack msm]; }; SkewHyperbolic = derive2 { name="SkewHyperbolic"; version="0.4-0"; sha256="1blxibjrgb738q2ybavp4q3d6yn7hayhg851ysghp118wpl32nwr"; depends=[DistributionUtils GeneralizedHyperbolic]; }; SkeweDF = derive2 { name="SkeweDF"; version="0.1.0"; sha256="11i6zbjhkcrr6g848sms21l1ixk401vd50cia74j78d4nvl8d8zc"; depends=[dplyr matrixStats optimr purrr Rcpp stringr zipfR]; }; @@ -5060,7 +5118,7 @@ in with self; { SmoothWin = derive2 { name="SmoothWin"; version="3.0.0"; sha256="0zq2sq0w4rs3hrra24wgbbzv88d1hx6m8q8gmc5h6nbs1172hs66"; depends=[nlme Rfast]; }; Snake = derive2 { name="Snake"; version="1.0"; sha256="10i1bqsva70lzavfqvc56ga70ddjfwf0hqpspj8fqwa0jw86jmbh"; depends=[]; }; SnakesAndLaddersAnalysis = derive2 { name="SnakesAndLaddersAnalysis"; version="2.1.0"; sha256="0h3664h6d32q201qfyv9y2gg4fhg3azdpwpmx4qfbc10hsc1ghl9"; depends=[]; }; - SnowballC = derive2 { name="SnowballC"; version="0.7.0"; sha256="1wwm71mp4b2mjb5985x782p6xj519dfrpd40qli7lmig6afyw3xi"; depends=[]; }; + SnowballC = derive2 { name="SnowballC"; version="0.7.1"; sha256="0d60h5qpk0vahcxm1y6ryqj00s4yrsdz671vq1i1cx8668zz2g3m"; depends=[]; }; SobolSequence = derive2 { name="SobolSequence"; version="1.0"; sha256="1vmp5jix3zvasvdirv8m88jc0cd8f34b4m1jvhs8g3v9lk8pxrrr"; depends=[Rcpp]; }; SocialPosition = derive2 { name="SocialPosition"; version="1.0.1"; sha256="1rrrjlq6czzhzipvkisbq024ca22v2vzx7wa4ddr9j7hnyyzzpic"; depends=[]; }; Sofi = derive2 { name="Sofi"; version="0.16.4.8"; sha256="0h9ir0xrwmsabfhwsr9hbpwabh1fsb3p51y8qcgm92iyvc6dl3mf"; depends=[foreign sampling shiny]; }; @@ -5070,7 +5128,6 @@ in with self; { SoilR = derive2 { name="SoilR"; version="1.2.105"; sha256="0liygb46900i6x4y6vhav7w7g4jw5chi4372jwdhn1kxp2g8zgfa"; depends=[assertthat deSolve expm igraph purrr sets]; }; SoilTaxonomy = derive2 { name="SoilTaxonomy"; version="0.2.3"; sha256="0gp9h32fikavxy6ds0vlc0fkb3gdrwvr1z5flpdmjqijjyr0frcc"; depends=[data_table stringr]; }; SoilTesting = derive2 { name="SoilTesting"; version="0.1.0"; sha256="0l808ic9irz7m8i3rcr65mqq5x4a3mk481c7f1ihca2rca43pm2j"; depends=[]; }; - Sojourn = derive2 { name="Sojourn"; version="1.1.0"; sha256="0dy3xb6nazify29xir2krj9509bqa68b1jwq3lvvhfakxjqm0j05"; depends=[dplyr lubridate magrittr nnet PAutilities rlang svDialogs zoo]; }; Sojourn_Data = derive2 { name="Sojourn.Data"; version="0.3.0"; sha256="1flxiga9szhifndrhmf4blgms477gnnf4gd6wkxqgv3vgisc4q4i"; depends=[]; }; SolveSAPHE = derive2 { name="SolveSAPHE"; version="2.1.0"; sha256="1r42h19l186jry2wxmrp9y1jdcwr7wx4an3nmryc4l33f48idbfr"; depends=[]; }; SomaDataIO = derive2 { name="SomaDataIO"; version="6.0.0"; sha256="1ld0icylfj9nsdacm3dc7p4q6ysah393njcjxzj0zyp077k014nz"; depends=[cli crayon dplyr lifecycle magrittr readxl tibble tidyr usethis]; }; @@ -5085,9 +5142,10 @@ in with self; { SoyURT = derive2 { name="SoyURT"; version="1.0.0"; sha256="0l710ijqmqvpcsxaqia1g1bm5317qp1cc2nsf5ccz1vmgqxrxn1g"; depends=[]; }; SpATS = derive2 { name="SpATS"; version="1.0-18"; sha256="1p7ibi4593a6f5ww02l74afxaxgk2nh8h67l43vm2p7zfmdxx2b3"; depends=[data_table fields spam]; }; SpNMF = derive2 { name="SpNMF"; version="0.1.1"; sha256="1xybxx47i3ww5d7chwl38xc48fbsclgyxcki8h85c6dkm49dxy8i"; depends=[NMF]; }; + SpPOP = derive2 { name="SpPOP"; version="0.1.0"; sha256="10s11sd8afridrkdg6q6wxqin0c214dl692sjz5f4ypv3irmwy04"; depends=[numbers qpdf]; }; SpTe2M = derive2 { name="SpTe2M"; version="1.0.1"; sha256="1qcjxr25v5m0nab3xq4bgzilmx2vgibgxnax5bhybfdaskgflhz5"; depends=[glmnet MASS]; }; SpaCCr = derive2 { name="SpaCCr"; version="0.1.0"; sha256="0qm1fr6nnax3i1i77fi73x1z8db557avh6kivs0nskb1dfj8ri4m"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo tidyr]; }; - SpaDES_tools = derive2 { name="SpaDES.tools"; version="1.0.1"; sha256="16myl9kfv6ab2a54kz9fmx84q7xqk2r99zqjycn6xw3zfg46j3bb"; depends=[backports checkmate CircStats data_table fastmatch fpCompare magrittr quickPlot raster Rcpp Require rgeos sp]; }; + SpaDES_tools = derive2 { name="SpaDES.tools"; version="2.0.0"; sha256="08x45bqxfsxp2q52r9jwqxyy3pfaz485q4mcb9zwjnqx4qyqcfp9"; depends=[backports checkmate data_table fpCompare Rcpp reproducible terra]; }; SpaceTimeBSS = derive2 { name="SpaceTimeBSS"; version="0.2-0"; sha256="1s4q7nb00616s229p7jrap8df8d8p5bxflskprq2h62mx22dlfsz"; depends=[JADE Matrix Rcpp RcppArmadillo]; }; SpadeR = derive2 { name="SpadeR"; version="0.1.1"; sha256="0iy2rkq4vvps1a73kqq37zpsyl4pvl3vh07dwvpfhvp7f8nxbx99"; depends=[]; }; SparseBiplots = derive2 { name="SparseBiplots"; version="4.0.1"; sha256="0jiyafhsddqa3llrp62lf8bgcvs3wp2pxc8ppaxx4zphkifw2yhr"; depends=[ggplot2 ggrepel gtable rlang sparsepca testthat]; }; @@ -5105,6 +5163,7 @@ in with self; { SpatEntropy = derive2 { name="SpatEntropy"; version="2.2-0"; sha256="0vp4mns6izycz9sznzqmww4h34gbk5nwfnnx10yba4l7y78zjjkg"; depends=[spatstat spatstat_geom spatstat_random]; }; SpatialAcc = derive2 { name="SpatialAcc"; version="0.1-4"; sha256="09rkzfzg6nh4n7dizkqrz651kp617l2557c9qpxacspl3ngbm82i"; depends=[sp]; }; SpatialBSS = derive2 { name="SpatialBSS"; version="0.13-0"; sha256="15bv6w576ch5fb7limnpm7m4n9yws8qsrmgvgvxqaq8fb5c5n8mr"; depends=[distances JADE Rcpp RcppArmadillo robustbase sp SpatialNP]; }; + SpatialDDLS = derive2 { name="SpatialDDLS"; version="0.1.0"; sha256="00aan8pkgyay5bcqw2w2nx0jl7z7aqpja285lw34ff2gqy0bbwrh"; depends=[dplyr ggplot2 ggpubr grr gtools keras Matrix pbapply RColorBrewer reshape2 reticulate rlang S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment tensorflow tidyr zinbwave]; }; SpatialEpi = derive2 { name="SpatialEpi"; version="1.2.8"; sha256="0q14scafm31xansk5zkhk6hb5jqcmi519jsd4drwkfvvdk8hf93d"; depends=[MASS Rcpp RcppArmadillo sp spdep]; }; SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.1-0"; sha256="0z1swxp1syz8hdskarjxx4sdd7wx835kcnb783bwqm235yh991j3"; depends=[fields maps]; }; SpatialGEV = derive2 { name="SpatialGEV"; version="1.0.0"; sha256="0g4v84a4c14a2vf7y055j9jgcki7q4182lmmmphrahiqwnjxhm1b"; depends=[evd mvtnorm TMB]; }; @@ -5141,7 +5200,7 @@ in with self; { SplitSoftening = derive2 { name="SplitSoftening"; version="2.1-0"; sha256="1fgcqax81zpknw642fm9dx1f6dpdgbcf3va0m1bhj6kl98yq7dqd"; depends=[]; }; SportsTour = derive2 { name="SportsTour"; version="0.1.0"; sha256="06d66yv0b7c3mg1bcnrlg576njxgri107ni0vnl27hzf46fyidwa"; depends=[]; }; SpotSampling = derive2 { name="SpotSampling"; version="0.1.0"; sha256="0s47dvigzkcl9ynrdiwrjzwap18dpkb29jngi8ddvf9m4xywj4al"; depends=[BalancedSampling MASS pracma sampling WaveSampling]; }; - SqlRender = derive2 { name="SqlRender"; version="1.13.1"; sha256="01fnm4r8006nf3q4ffxj8z9jkg8lpgg7racrwaqzbb13gx6l9d3q"; depends=[checkmate rJava rlang]; }; + SqlRender = derive2 { name="SqlRender"; version="1.15.0"; sha256="05gngf04w43j0zjfri867cfir36l9c0fprqzrwyhdgmgj7hlnkrh"; depends=[checkmate rJava rlang]; }; SqueakR = derive2 { name="SqueakR"; version="1.3.0"; sha256="09l6dj1xq2zxxy6jnh1dl4rlcbx06fvf0jp2nypv3497dn97jsrh"; depends=[dplyr ggcorrplot ggeasy gghighlight ggplot2 ggpubr googlesheets4 MASS plotly RColorBrewer readxl report rlist rstatix shiny shinydashboard]; }; Sshaped = derive2 { name="Sshaped"; version="1.1"; sha256="0jy926ykyw7a2q0wabbvm2sm2g4d5y8wl6na4xjmf0ybr6rma458"; depends=[Rcpp RcppArmadillo]; }; Sstack = derive2 { name="Sstack"; version="1.0.1"; sha256="137vsas2kw3l37c141g51sgx0j6z8ys6hbxjmsdymz1fxsjr4adg"; depends=[doParallel dplyr foreach randomForest]; }; @@ -5152,7 +5211,7 @@ in with self; { StableEstim = derive2 { name="StableEstim"; version="2.2"; sha256="0z8ia3zqkidnpg2zl055msc0dmhbsq73h8c43y0vfmhdzqszcx9d"; depends=[fBasics MASS Matrix numDeriv Rdpack stabledist testthat xtable]; }; StackImpute = derive2 { name="StackImpute"; version="0.1.0"; sha256="07b83bql9ch3arxzv94mllb61d4sv20lvpixlpzi7k8cjdddqizd"; depends=[boot dplyr magrittr MASS mice sandwich zoo]; }; StakeholderAnalysis = derive2 { name="StakeholderAnalysis"; version="1.2"; sha256="164mah8h8izxaqp8hc43l6mlnf95pydkcx2laqrlqr9b0bybadxb"; depends=[]; }; - StanHeaders = derive2 { name="StanHeaders"; version="2.21.0-7"; sha256="0srkyawyiykn3p5lw1z3zf18s4ax4iasv1ci3l1px40f9w36wm17"; depends=[RcppEigen RcppParallel]; }; + StanHeaders = derive2 { name="StanHeaders"; version="2.26.25"; sha256="1xds719xga7144mxirjnqxmcv1ncj5fb5z247blm4dkbn9q2vg4k"; depends=[RcppEigen RcppParallel]; }; StanMoMo = derive2 { name="StanMoMo"; version="1.1.0"; sha256="1qf5pvz5bwn1ax0rj9w0q22w6icd3fv7xxpxjnf268pl65fxhmv8"; depends=[BH bridgesampling dplyr ggfan ggplot2 httr latex2exp loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tibble tidyr tidyselect tidyverse]; }; Stat2Data = derive2 { name="Stat2Data"; version="2.0.0"; sha256="1fpp3b4k7x915a9wkpyj4dvvqp0wz7c3lpbh154vrxrdsr712z0k"; depends=[]; }; StatDataML = derive2 { name="StatDataML"; version="1.0-27"; sha256="168bydradzprvvyfchzq4g3nc6f8kpgd5165i02nhj1irwxa6jh8"; depends=[XML]; }; @@ -5160,19 +5219,21 @@ in with self; { StatPerMeCo = derive2 { name="StatPerMeCo"; version="0.1.0"; sha256="1nm6brlj6h7jx8nqagrfk294ay3pfmkiizabwlb87qfnsfwchpk3"; depends=[]; }; StatRank = derive2 { name="StatRank"; version="0.0.6"; sha256="14d8v3bp8vgksi6q0mxajwd9s8zi6lns3qwi1vcr5xp9rjp4n6iy"; depends=[ggplot2 plyr truncdist]; }; StatTeacherAssistant = derive2 { name="StatTeacherAssistant"; version="0.0.1"; sha256="0n9na9mzjzcgkq97ix1v3dxhzbc6c9s8g3rm4ikwsa2j4asrfbrd"; depends=[DescTools dplyr DT ggplot2 plotly rhandsontable rio rmatio shiny shinyalert shinyBS shinyjs sortable stringi stringr teachingApps tidyr]; }; - Statamarkdown = derive2 { name="Statamarkdown"; version="0.7.2"; sha256="0mkwdc0xsfnaq518g99jfm4hn88n8g2bf860gv185gim3m084nm1"; depends=[knitr xfun]; }; + Statamarkdown = derive2 { name="Statamarkdown"; version="0.7.4"; sha256="1fx816n9n6qxann596ppqbrw84l8012z6hyiaxm3k56bf3xzfdfa"; depends=[knitr xfun]; }; Statsomat = derive2 { name="Statsomat"; version="1.1.0"; sha256="1lfgbbf1pcfbih5nfb6rbiq2h0hlxg1fzmcf4330yc48r998q4x6"; depends=[car corrplot data_table DDoutlier energy ggplot2 gridExtra kableExtra knitr readr reshape2 rmarkdown shiny shinydisconnect]; }; SteinIV = derive2 { name="SteinIV"; version="0.1-1"; sha256="1bm4lc7g9h9jkb1dpzb84289bwxcywp0a8vylv6ipvhiqbqk5d95"; depends=[]; }; SteinerNet = derive2 { name="SteinerNet"; version="3.1.0"; sha256="03wr746dkwp8vg91y986q0xvgz1y9b5q25g0kig2sx6m75li3yif"; depends=[igraph]; }; StemAnalysis = derive2 { name="StemAnalysis"; version="0.1.0"; sha256="0xp1scdmrq3q61mbpq3362wv2zgd86g1wf827p2fdnihvkmdvp21"; depends=[lmfor]; }; StempCens = derive2 { name="StempCens"; version="1.1.0"; sha256="0jphyikfggx0yj5f5k3fykf3fdv9msppymzpyin1m7xfmfi5cwia"; depends=[distances ggplot2 MCMCglmm mvtnorm Rcpp RcppArmadillo Rdpack tmvtnorm]; }; StepBeta = derive2 { name="StepBeta"; version="2.1.0"; sha256="1wr0f4c64hkhq8kjv6vf8laz5pmlyc0ajgd8007q8jris4jydzs6"; depends=[aod betareg combinat glue MASS]; }; + StepGWR = derive2 { name="StepGWR"; version="0.1.0"; sha256="0sqgixmxla1sv3jkjhby0gggzs3iyg1cwq267y9hymzx2gsafry5"; depends=[MASS numbers qpdf]; }; StepReg = derive2 { name="StepReg"; version="1.4.4"; sha256="1lqwaxf6alk4y5mfrmhsnrchijpzv67n8lmhmpyx1qr4hv0lcfjp"; depends=[dplyr purrr stringr survival]; }; StepSignalMargiLike = derive2 { name="StepSignalMargiLike"; version="2.6.0"; sha256="0j85lvs2bljfhf482r31sq3xgk8l73hcw22wgxxp8z8nla38cwf9"; depends=[Rcpp]; }; SteppedPower = derive2 { name="SteppedPower"; version="0.3.2"; sha256="1yjc4w98l3657vsmrwm27sw5p1wibl1py59x01kq4h1g24fpw65r"; depends=[Matrix plotly Rfast]; }; StepwiseTest = derive2 { name="StepwiseTest"; version="1.0"; sha256="1fdm4s9l6grgd45r98ybbsh40rnmnn16c0id6lv28cpmssi0iphi"; depends=[Rcpp RcppArmadillo]; }; StereoMorph = derive2 { name="StereoMorph"; version="1.6.7"; sha256="0qrbl86ba83j4r6j2phap5n6ryi729gbypn95h0vbgrv752nayqp"; depends=[bezier jpeg MASS png Rcpp rjson shiny svgViewR tiff]; }; StochBlock = derive2 { name="StochBlock"; version="0.1.2"; sha256="0g0l36imgw3bvqj5g45abwicswcyqprzbkas9pzgha8dsc5s12w3"; depends=[blockmodeling doParallel doRNG foreach Rcpp RcppArmadillo]; }; + StockDistFit = derive2 { name="StockDistFit"; version="1.0.0"; sha256="02af493w8mhkqpwa1h2wvga19rz22b09z2j69yn8r74jfdfj08wz"; depends=[dplyr fBasics fGarch fitdistrplus ghyp magrittr quantmod xts zoo]; }; Storm = derive2 { name="Storm"; version="1.2"; sha256="1fg8y9my9yp6px1gh43mr3m2s2z262mzq03pj52mqg3n186vk8z3"; depends=[permute rjson]; }; StrainRanking = derive2 { name="StrainRanking"; version="1.2"; sha256="1r8avm9xajqmsy4x7pgh1yaffq7wl5i5kg75kdilydwmii6n19i0"; depends=[]; }; StratSel = derive2 { name="StratSel"; version="1.3"; sha256="0hd6q8s8aiymcd33kv0gd0a4wzr86xxdzwn18jgpyk9q8pmg8gvl"; depends=[Formula MASS memisc mnormt pbivnorm]; }; @@ -5211,11 +5272,11 @@ in with self; { SuperpixelImageSegmentation = derive2 { name="SuperpixelImageSegmentation"; version="1.0.5"; sha256="01j8p1vfnswy41b7nzmwml4aq8s00xwdk3zjcc1b6n9bqv0cgnaz"; depends=[ClusterR lattice OpenImageR R6 Rcpp RcppArmadillo]; }; Superpower = derive2 { name="Superpower"; version="0.2.0"; sha256="0bv2jx3hadp5d9c3q790in3m728c8jc1nkp9wqvzcdip1d29hyin"; depends=[afex dplyr emmeans ggplot2 gridExtra magrittr MASS mvtnorm reshape2 tidyr tidyselect]; }; SuppDists = derive2 { name="SuppDists"; version="1.1-9.7"; sha256="025b9nlxz62wk84295csyzbncpn80i3iby3sxdigf3swcgi2fmbb"; depends=[]; }; - SurfaceTortoise = derive2 { name="SurfaceTortoise"; version="1.0.2"; sha256="1l586x9np5rclqdrnv8b72ixlppzlnsq4yf99ny6aq5a9lwzmcgm"; depends=[gstat raster rgeos sp]; }; + SurfaceTortoise = derive2 { name="SurfaceTortoise"; version="2.0.1"; sha256="0l1r495qnqfr3izngv7dmnb13dcp5736khgwmkm7hkxw8fjpzc6j"; depends=[gstat sf terra]; }; Surrogate = derive2 { name="Surrogate"; version="2.8"; sha256="0svzywvnqzmla9y6xwrx91grx16sfx4cyb8ykx18jrl1vdd6mqjy"; depends=[copula dplyr extraDistr flexsurv kdecopula ks lattice latticeExtra lme4 logistf MASS msm mvtnorm nlme pbapply rms rvinecopulib survival]; }; SurrogateOutcome = derive2 { name="SurrogateOutcome"; version="1.1"; sha256="1wiqn9gfvj225dvmp49fyybp77np507s04f28a9wa9jiyvqf7m97"; depends=[survival]; }; SurrogateRegression = derive2 { name="SurrogateRegression"; version="0.6.0"; sha256="0815zskr4g960wm6jcjn0ykmc0db8fg6vzfw97lfgm5m9bjd4h5c"; depends=[Rcpp RcppArmadillo]; }; - SurrogateRsq = derive2 { name="SurrogateRsq"; version="0.2.0"; sha256="0ih5jwl2csdic4dhrb1hhnrrcpqa4b3d2ic4bjpfxll7max3q722"; depends=[DescTools MASS PAsso progress scales]; }; + SurrogateRsq = derive2 { name="SurrogateRsq"; version="0.2.1"; sha256="1g77cwp5cdldhqlp3k7f7pzxjww2pxgr842qd3fr2k0gzg2s246a"; depends=[MASS PAsso progress scales]; }; SurrogateTest = derive2 { name="SurrogateTest"; version="1.3"; sha256="0vs1ii3l6i6cmswyv6xjbya5filfixppyzmnw099g9s4x8kn0kq7"; depends=[survival]; }; SurvCorr = derive2 { name="SurvCorr"; version="1.1"; sha256="0pccjc9zdvbb869wfywm23l63h1bpi5px4q5x7fq54pm0iyi1k73"; depends=[fields survival]; }; SurvDisc = derive2 { name="SurvDisc"; version="0.1.1"; sha256="0ajvnm0a4krbm0m584bg58hd7dzl0f2rz5as1zsajx8agywb5qmv"; depends=[cubature MASS mvtnorm nlme simex survival]; }; @@ -5234,17 +5295,16 @@ in with self; { SymbolicDeterminants = derive2 { name="SymbolicDeterminants"; version="2.0.0"; sha256="0hf9b9g2vgpyqbxgi5rkkls2b8vw1zrwl8lymwvwb6y1vwfl9pym"; depends=[arrangements fs]; }; SynDI = derive2 { name="SynDI"; version="0.1.0"; sha256="15vrp4qhgf0689h0jqygrdl1nl0xipwmy29dpfa8lx1vd1pb7dnn"; depends=[arm boot broom dplyr knitr magrittr MASS mice mvtnorm randomForest StackImpute]; }; SyncMove = derive2 { name="SyncMove"; version="0.1-0"; sha256="1jlnsj5v8y5pijfkww7ng7nkwvj93naw29wcxxj130ww5qk7qk1z"; depends=[]; }; - SyncRNG = derive2 { name="SyncRNG"; version="1.3.1"; sha256="05a5ifv5yy7brl76cmq7mgqm9s9gm7qgc1cfzih7q1jrw955k400"; depends=[]; }; + SyncRNG = derive2 { name="SyncRNG"; version="1.3.2"; sha256="11v383acl2b9fjmi59rmckwjgl2f69wr5fgcym2zjvizpfp97h1z"; depends=[]; }; SynchWave = derive2 { name="SynchWave"; version="1.1.2"; sha256="1y53235523z0nf4pmskdiz3xq4p8hdzvf5jy4ml4isj6nqzy6b88"; depends=[fields]; }; - Synth = derive2 { name="Synth"; version="1.1-6"; sha256="0qi8534rw0z20l1m4hhcn2xm16g8rrqfvpy0fs4hik4xc5cjgmbg"; depends=[kernlab LowRankQP optimx rgenoud]; }; - SynthETIC = derive2 { name="SynthETIC"; version="1.0.2"; sha256="1z7jyal707a93hv0fsgnkxpnywqw6ksifk0546alzm32g5lp4655"; depends=[ggplot2 magrittr rlang]; }; + SynthETIC = derive2 { name="SynthETIC"; version="1.0.4"; sha256="00aw9s8fxqld0iv3wwlbf3y9gydbawbg611ijq8chldpxkcra5vv"; depends=[ggplot2 magrittr rlang]; }; SynthTools = derive2 { name="SynthTools"; version="1.0.1"; sha256="19vasz3nnm5vgwqs6g2a5bibmk44br1bxga5zavsx938x3jw9gnd"; depends=[dplyr magrittr Rdpack]; }; Sysrecon = derive2 { name="Sysrecon"; version="0.1.3"; sha256="01vbkv707m31bf69j3vxfiwgvaz56v2yr6da0j0796rcmca1d4b8"; depends=[ape dplyr ggplot2 ggtree magrittr patchwork plyr RColorBrewer rlang SnowballC stringr tm]; }; SystemicR = derive2 { name="SystemicR"; version="0.1.0"; sha256="1vk08w734zxvrwzd81iy0azwcj53k6wvgc1qlaxw96hirdwdg6zr"; depends=[igraph Matrix quantreg xts]; }; T2EQ = derive2 { name="T2EQ"; version="1.1"; sha256="1skkkryw63pfx1xslia1lczb2psja6v6hcbph4isdcksb4l4pcig"; depends=[]; }; T2Qv = derive2 { name="T2Qv"; version="0.1.0"; sha256="1zx7r0axa7b83pynilp0rmw6apilzsqjacn426q4i4jlsvr1ba3k"; depends=[ca dplyr highcharter htmltools purrr shiny shinycssloaders shinydashboard shinydashboardPlus stringr tables tidyr]; }; T4cluster = derive2 { name="T4cluster"; version="0.1.2"; sha256="0wai4qgpkwc1p5wwpvi0z6zrcj9ha1wiy27qjpcfvfa2bhaid2w5"; depends=[ADMM fda ggplot2 lpSolve maotai MASS mclustcomp Rcpp RcppArmadillo Rdimtools Rdpack rstiefel scatterplot3d]; }; - T4transport = derive2 { name="T4transport"; version="0.1.1"; sha256="14i4ap7izlr33fsyfrvv8gkljx3w20n2l1caibs2qsdz23nk9s07"; depends=[CVXR lpSolve Rcpp RcppArmadillo Rdpack]; }; + T4transport = derive2 { name="T4transport"; version="0.1.2"; sha256="091mq0f2cawkfmaql9gqgv2sbs5fwyv4i2sdw14p1r01wznfrqzf"; depends=[CVXR lpSolve Rcpp RcppArmadillo Rdpack]; }; TAF = derive2 { name="TAF"; version="4.2.0"; sha256="0k64mq4y03nlfcfcyh37srlnc3wssdlsfqgln1slmqlbcpfwz68b"; depends=[lattice]; }; TAG = derive2 { name="TAG"; version="0.5.1"; sha256="1hni3ay1pg4gy3gm3sn3bcr8m3z2vlc5ivg7bmkzpxqdkl0w01h2"; depends=[DiceKriging FastGP foreach Matrix mgcv mlegp randtoolbox Rcpp RcppArmadillo]; }; TAM = derive2 { name="TAM"; version="4.1-4"; sha256="0b81d0g4j94yrfzj019jffxrk1aw24iscddp60kjbkrl5p7qy38g"; depends=[CDM Rcpp RcppArmadillo]; }; @@ -5258,7 +5318,6 @@ in with self; { TCA = derive2 { name="TCA"; version="1.2.1"; sha256="1gyps0m7r44vcbzpbrs3xy2kyb2xsvmfzk1c0aq04s4ndcksplwb"; depends=[config data_table futile_logger gmodels Matrix matrixcalc matrixStats nloptr pbapply pracma quadprog rsvd]; }; TCGAretriever = derive2 { name="TCGAretriever"; version="1.5"; sha256="1xg1rz2h5jbpdd5axli3ripqxb0bj64yrd4y5nzr8axajiaybkj9"; depends=[httr]; }; TCIApathfinder = derive2 { name="TCIApathfinder"; version="1.0.6"; sha256="15f3w6vhbqy4xzidxasjnqigxchd3jbr2kpm3gggjnkp7rzsfgaf"; depends=[httr jsonlite]; }; - TCIU = derive2 { name="TCIU"; version="1.2.2"; sha256="1n08jvc60gng3ziisrvgl9kfi55l6mh7bbnwp5mbnnqh0mkdhfv0"; depends=[cubature doParallel dplyr DT extraDistr fancycut fmri foreach forecast geometry ggplot2 ggpubr gridExtra ICSNP MultiwayRegression plotly pracma RColorBrewer reshape2 rrcov scales spatstat_explore spatstat_geom tidyr zoo]; }; TDA = derive2 { name="TDA"; version="1.9"; sha256="0gk058mbbywdpmjif3zl0g4a4sn3jr5bxksmqwhk3h881rsjic6h"; depends=[BH FNN igraph Rcpp RcppEigen scales]; }; TDAkit = derive2 { name="TDAkit"; version="0.1.2"; sha256="1gvcv3016kjk98qm07i972fi66bcljj1avmagyc8qxs29cq3ngg3"; depends=[energy ggplot2 maotai Rcpp RcppArmadillo Rdpack T4cluster TDAstats]; }; TDApplied = derive2 { name="TDApplied"; version="2.0.4"; sha256="0bq06pzw7w4qp8cqvkxqqhx2qyn03vz7zxsk3f1ykjv846qxf6bb"; depends=[clue doParallel foreach iterators kernlab parallelly rdist]; }; @@ -5277,15 +5336,16 @@ in with self; { TExPosition = derive2 { name="TExPosition"; version="2.6.10.1"; sha256="0psdm35g7h7d8cr3xlyq8akr0qrbl44d5pnsaf535cs5pmqdp87b"; depends=[ExPosition prettyGraphs]; }; TFMPvalue = derive2 { name="TFMPvalue"; version="0.0.9"; sha256="1rsxqvq1nkyhwmhm7mf7rd02rvh7xinnhqbqic6q9vicbvkmdnxr"; depends=[Rcpp]; }; TFisher = derive2 { name="TFisher"; version="0.2.0"; sha256="0vz74ww1lf1prfwz74hfsi3a8nzq8ss7aqjr85c1d87vss2796xx"; depends=[Matrix mvtnorm sn]; }; + TFunHDDC = derive2 { name="TFunHDDC"; version="1.0.0"; sha256="00yjiqyr99vpk32ky5bnnapvb4rywm9bx1wpdfq26mxk1dqxr8xn"; depends=[fda fda_usc MASS stringr tclust]; }; TGS = derive2 { name="TGS"; version="1.0.1"; sha256="01mwdlgfjlxy0q5lxcmzk6lsb806987va7yag0zpjjd2bzmdh70k"; depends=[bnstruct doParallel foreach ggm minet rjson]; }; TGST = derive2 { name="TGST"; version="1.0"; sha256="1xnb41ksggdi57gnkjaab98c4nfdkxqx53rv9pyh3j0cg0kbkk9v"; depends=[ggplot2 knitr]; }; - TH_data = derive2 { name="TH.data"; version="1.1-1"; sha256="0ynxacnz002bjsp2ybql7rdqw4zd14af8r7w44nwbx22n4bapwzd"; depends=[MASS survival]; }; + TH_data = derive2 { name="TH.data"; version="1.1-2"; sha256="0wyyvm6l6yvqvfnd1c4l9ff5445zaq9lr0ihz8pg9kkggfslxya7"; depends=[MASS survival]; }; TIGERr = derive2 { name="TIGERr"; version="1.0.0"; sha256="04nnm0adf0sbgv7a2ikaq2a5kb9j1xmdfmssizm49q5j457rrl7d"; depends=[pbapply ppcor randomForest]; }; TIMP = derive2 { name="TIMP"; version="1.13.6"; sha256="1if2qm40nlz54pylqvdp4pk2jmicn8wkdlywrkr5hn80c0yyy879"; depends=[colorspace deSolve fields gclus gplots minpack_lm nnls]; }; TITAN2 = derive2 { name="TITAN2"; version="2.4.1"; sha256="16zf42s1as2xrvyhd0lnv36mgnr5w19xv11pkl0k8imb5bdkhxa2"; depends=[cowplot dplyr ggplot2 ggridges glue purrr snow tibble]; }; TKCat = derive2 { name="TKCat"; version="1.0.7"; sha256="0j3m10adfc3k7znaissl1w6pqg5mf2qhl4r2i89qjdmw0i1h27pa"; depends=[base64enc ClickHouseHTTP DBI dplyr DT future getPass htmltools jsonlite jsonvalidate magrittr markdown Matrix promises readr ReDaMoR rlang shiny shinydashboard tidyselect uuid visNetwork xml2]; }; TLMoments = derive2 { name="TLMoments"; version="0.7.5.3"; sha256="096sr0j4vhlfsaxc565zgw0mjk4sxkl03i7ip3hzcfph1c05yj6h"; depends=[ggplot2 hypergeo lmomco Rcpp]; }; - TMB = derive2 { name="TMB"; version="1.9.3"; sha256="10cl88v3jdjv0sacfvk1g9y7sl918rxlyk9ddy2d1y7055j8y0qg"; depends=[Matrix RcppEigen]; }; + TMB = derive2 { name="TMB"; version="1.9.4"; sha256="0z3k13zi5lmsh3c2hb77gb2va1phsm3xf72hfq24nkm7r7fbq0bh"; depends=[Matrix RcppEigen]; }; TMDb = derive2 { name="TMDb"; version="1.1"; sha256="062n9mi2f9g2xxpnymja57xnpl855d8mwyfwci7a8cq4c7w7avj7"; depends=[httr jsonlite stringi]; }; TMTI = derive2 { name="TMTI"; version="1.0.1"; sha256="080k4lmwspxi6salv4zq9lipwcah3zr6vfc0lrll1z8gynk8arq9"; depends=[Rcpp]; }; TNC = derive2 { name="TNC"; version="0.1.0"; sha256="0639wvylmk9mapvmz79ij65g1phv3ylc683awi4pgaf9yfwlmjkn"; depends=[]; }; @@ -5331,9 +5391,9 @@ in with self; { TSP = derive2 { name="TSP"; version="1.2-4"; sha256="1263ay3dar2mzm89nf31gl7n8d983qjiy4qwz7sgv8vwkbz0pg9h"; depends=[foreach]; }; TSPred = derive2 { name="TSPred"; version="5.1"; sha256="14dzpm5i5iml9kb49rnw7kq1ga03l4c6m485b1p8p3ya0n6mivkl"; depends=[dplyr e1071 elmNNRcpp EMD forecast keras KFAS magrittr ModelMetrics MuMIn nnet plyr randomForest Rlibeemd RSNNS tfdatasets vars wavelets]; }; TSS_RESTREND = derive2 { name="TSS.RESTREND"; version="0.3.1"; sha256="1la1ff9ajcabdsz5f2761647304fpwp779gv0gjds4mg25rf6n2f"; depends=[bfast broom ggplot2 mblm RcppRoll strucchange]; }; - TSSS = derive2 { name="TSSS"; version="1.3.4"; sha256="0iywf57pw7bnx6sf2w2wkwcnwhplpgnbmifq5rna2vd2v2rp5hkd"; depends=[]; }; + TSSS = derive2 { name="TSSS"; version="1.3.4-2"; sha256="1nfrlh05j4vkizynq4k51a4yz307z81a5n2l88kfsmssydrc4pv2"; depends=[]; }; TSSVM = derive2 { name="TSSVM"; version="0.1.0"; sha256="07jf5s557j2xr5918fa0rkzz0ivb01acyzw2cbky92wjd21qa97s"; depends=[e1071 forecast]; }; - TSTutorial = derive2 { name="TSTutorial"; version="1.2.5"; sha256="0zq383j2sciywnzri1dc3c1i1hc7d30v1qscaija2pbhqyjym4qw"; depends=[MASS]; }; + TSTutorial = derive2 { name="TSTutorial"; version="1.2.6"; sha256="1yvymr2z1853zmgj1nf8p86pbyzx666rcfyyzqvrscb7ab0bdfld"; depends=[MASS]; }; TSVC = derive2 { name="TSVC"; version="1.2.2"; sha256="0c2dwsb17al6vfgk38xlbzww08xa1i2lji1bhzc3zlp7nb4mkxy8"; depends=[mgcv plotrix]; }; TSclust = derive2 { name="TSclust"; version="1.3.1"; sha256="1pj984sf7z0bakr55jqcrxr4mh4gihdv197m2k05phpp5hsplsjh"; depends=[cluster dtw forecast KernSmooth locpol longitudinalData pdc]; }; TSdeeplearning = derive2 { name="TSdeeplearning"; version="0.1.0"; sha256="0phf0nksraf1w7hkg4b9kk890743cbmgra8blqblyd8n6gfy1r9p"; depends=[BiocGenerics keras magrittr reticulate tensorflow tsutils]; }; @@ -5348,7 +5408,7 @@ in with self; { TTCA = derive2 { name="TTCA"; version="0.1.1"; sha256="16slr4c2nwbchsg6fk5prq22p2v4cjxzk93wd3xggav2lzrf8a5h"; depends=[MASS Matrix quantreg RISmed tcltk2 VennDiagram]; }; TTR = derive2 { name="TTR"; version="0.24.3"; sha256="11xsmbvmxq2j119j2z58bx1fkkb2xlhmzc35z5fbwr3nchrfz6jd"; depends=[curl xts zoo]; }; TTS = derive2 { name="TTS"; version="1.1"; sha256="0b9zlvsjdblc7yavpm9ni0av5z40xlwvn5v37dg3kd6ymjykir1k"; depends=[mgcv sfsmisc]; }; - TUFLOWR = derive2 { name="TUFLOWR"; version="0.1.0"; sha256="07mb60nphy4x4qv4dkd4qblf7nbbxhjn39nqalgyg6hjp87zhg8x"; depends=[dplyr ggplot2 gstat lubridate magrittr raster readr rgdal rlang sp stringr tibble tidyr]; }; + TUFLOWR = derive2 { name="TUFLOWR"; version="0.1.1"; sha256="0z2fr8br7afy8sn0mn0cxpw39rcm5k7zb2gci9brl6c5ss5n2qsn"; depends=[dplyr ggplot2 gstat lubridate magrittr raster readr rlang sf sp stringr tibble tidyr]; }; TULIP = derive2 { name="TULIP"; version="1.0.2"; sha256="16jf6ybwrhc4ckajdzpswilzn09agqz7mxg9a93gxkqvc2rwh5br"; depends=[glmnet MASS Matrix tensr]; }; TUWmodel = derive2 { name="TUWmodel"; version="1.1-1"; sha256="1am3ywcj1rqgz5i2g9c6d6fgiv8b2nabllfy84xx1n18pin7mfbk"; depends=[]; }; TVMM = derive2 { name="TVMM"; version="3.2.1"; sha256="0z2gdcci9pbpgnmr6dch5v0rsn34q18rwb14x9gyxdcvh3bch8z0"; depends=[DescToolsAddIns ggplot2 gridExtra MASS robustbase tcltk2]; }; @@ -5382,22 +5442,25 @@ in with self; { TemporalGSSA = derive2 { name="TemporalGSSA"; version="1.0.1"; sha256="0fbpgng4i46wkd38i0j5461nrmcasqpnyn58f7llpk0r6p2fizx2"; depends=[]; }; Tendril = derive2 { name="Tendril"; version="2.0.4"; sha256="1wvczfklsccs8jd081vb6d6h7i35lhf6na925fm7wq8ars0b23wd"; depends=[dplyr ggplot2 magrittr plotly plyr reshape2 scales]; }; TensorClustering = derive2 { name="TensorClustering"; version="1.0.2"; sha256="094pk4v78d97sanrkirk0dyhy6w2i43imcw21q2r76w11d62w7k7"; depends=[abind combinat MASS mvtnorm pracma Rcpp rTensor tensr TRES]; }; - TensorPreAve = derive2 { name="TensorPreAve"; version="0.1.1"; sha256="01dd9ny8ikrhdsi3rv9nhs10rn0ps8dly8qpqk576qqc8yb0d506"; depends=[MASS pracma rTensor]; }; + TensorComplete = derive2 { name="TensorComplete"; version="0.2.0"; sha256="1phjdcmp74i2d79p2lhm40qb5ind6iyqbkhkb1khw7i46r5f8zd6"; depends=[MASS pracma tensorregress]; }; + TensorPreAve = derive2 { name="TensorPreAve"; version="1.1.0"; sha256="0mgyw2mpbsxvxymzy97kpscsjagw8yxk5r3pich0dn0his9ig31r"; depends=[MASS pracma rTensor]; }; TensorTest2D = derive2 { name="TensorTest2D"; version="1.1.1"; sha256="1yx1ggsbximbsrwimyg7jblbqr0f75z278f38hg61qjxzf9m4ndk"; depends=[]; }; - Ternary = derive2 { name="Ternary"; version="2.1.3"; sha256="175nw6j6z2ij0mdaydm7jjch2g2lkjy6c2dfjiwm7f7s57ryxw0q"; depends=[shiny sp viridisLite]; }; + Ternary = derive2 { name="Ternary"; version="2.2.0"; sha256="0hjn5bagr0sgggh614ls97vm35wfi99cfx23gc9cjysf7dbk5rl8"; depends=[PlotTools RcppHungarian shiny sp viridisLite]; }; TesiproV = derive2 { name="TesiproV"; version="0.9.2"; sha256="00igkm0y9v363djhig4ydn3bfadqf6rrrdhkai2pl1w876xk2ydw"; depends=[edfun ggplot2 gridExtra nloptr pracma]; }; TestCor = derive2 { name="TestCor"; version="0.0.2.2"; sha256="01ndiqi0z672ymm2bid0r0cqz8fqd9268xgmmq74z3agj81l5c5j"; depends=[MASS Rcpp RcppArmadillo]; }; TestDataImputation = derive2 { name="TestDataImputation"; version="2.3"; sha256="11acpw9vjar6g8n9cifpfs4208j1hqqp15j59mr9pnfwq747hw2z"; depends=[Amelia mice]; }; TestDesign = derive2 { name="TestDesign"; version="1.5.1"; sha256="1r59zx97g1z49x6lkiqw2kclb88jksgwj589jymwcng3h5ja68ah"; depends=[crayon foreach logitnorm lpSolve Rcpp RcppArmadillo]; }; TestDimorph = derive2 { name="TestDimorph"; version="0.5.5"; sha256="00mh7g6ijlimkfk35yjkmhbx1aqc511v3002q73ppx5977a7zwf0"; depends=[corrplot dplyr ggplot2 Morpho multcompView tidyr tmvtnorm truncnorm]; }; TestFunctions = derive2 { name="TestFunctions"; version="0.2.0"; sha256="018nkz8r6vqahrzq3d588i3ffb1bmd1pdk87j4ivcdsx99mq15sn"; depends=[]; }; - TestGardener = derive2 { name="TestGardener"; version="3.1.4"; sha256="0lk4yrrzl5vhkhgcn7p1pfl5kg61h1kq36gmwfd6xpibwzfqxcpn"; depends=[dplyr fda ggplot2 ggpubr knitr pracma rgl rmarkdown stringr tidyr utf8]; }; + TestGardener = derive2 { name="TestGardener"; version="3.2.3"; sha256="1vppjbpdbbf09m5bm57mq03g6xhk900yic3l774lj0h2gd7dq092"; depends=[dplyr fda ggplot2 ggpubr knitr plotly pracma rgl rmarkdown stringr tidyr utf8]; }; TestScorer = derive2 { name="TestScorer"; version="1.7.2"; sha256="006c3g3gx55mfr93srldwvgz5vm6nkr3f57yi4qg6krn0d32865f"; depends=[]; }; TestingSimilarity = derive2 { name="TestingSimilarity"; version="1.1"; sha256="1iq0wh13rl6rby44ql4d286r1akzwmbpsvnq9p8lkl8709z0d34w"; depends=[alabama DoseFinding lattice]; }; + Tex4exams = derive2 { name="Tex4exams"; version="0.1.2"; sha256="0058xn98vy40d0lfxral56avmqck7n6x2gb7j2ngnnj356di5d8m"; depends=[fractional numbers polynom pracma]; }; TexExamRandomizer = derive2 { name="TexExamRandomizer"; version="1.2.3"; sha256="0l0vpx4rkib2m8hwhwy9j8pqyf7gpb9qg8wpnh3238snwpadgy3a"; depends=[assertthat jsonlite Rcpp stringr]; }; TextForecast = derive2 { name="TextForecast"; version="0.1.3"; sha256="0fjywwifkxpfyqhq6yrjy0ipnfr3lfgb179w993qj8f9nmdclrw1"; depends=[doParallel dplyr forcats forecast ggplot2 glmnet Matrix pdftools plyr pracma RColorBrewer tidyr tidytext tm udpipe wordcloud]; }; TextMiningGUI = derive2 { name="TextMiningGUI"; version="0.3"; sha256="0hl4rswc3icwf11idk9ydrbd3ghz6mb1vnabknal0fxffpdi37dd"; depends=[dplyr ggplot2 ggwordcloud RColorBrewer slam syuzhet tibble tidyr tidytext tm]; }; ThankYouStars = derive2 { name="ThankYouStars"; version="0.2.0"; sha256="0r77ns3102wj1wvrfsa06l427imxyfhigpbs36cdxl2j87qrjzl6"; depends=[httr jsonlite]; }; + TheOpenAIR = derive2 { name="TheOpenAIR"; version="0.1.0"; sha256="0ygv8hj3cnac8w8ppddnia03gw4cwi49gv9jddcc1132fkg6nbyr"; depends=[cli data_table httr magrittr R_utils reticulate rstudioapi stringi stringr tibble xml2]; }; TheSFACE = derive2 { name="TheSFACE"; version="0.1.0"; sha256="07n3nw95qc6xd9jqv60lmkh8nqbs7jsklngc80560j4znbixfw40"; depends=[dplyr ggplot2 gridExtra nnet purrr tibble tidyr]; }; ThermIndex = derive2 { name="ThermIndex"; version="0.2.0"; sha256="0s9d55577dq61qixwwfwmqc2k2c8my00j2ng97ng42cw0jc7aylm"; depends=[]; }; ThermalSampleR = derive2 { name="ThermalSampleR"; version="0.1.0"; sha256="1cl14scgczsc9xvvp5cjk548a48a7vmnc6dgsdhl8bqlkkrp1aly"; depends=[cowplot dplyr EnvStats ggplot2 janitor magrittr MASS purrr rlang sn tidyr]; }; @@ -5408,15 +5471,15 @@ in with self; { ThreeWay = derive2 { name="ThreeWay"; version="1.1.3"; sha256="17yl8zq029wiy3c0f4ssljx85dnm9n862wj2d24w7p0lxlvarmz6"; depends=[]; }; ThreeWiseMonkeys = derive2 { name="ThreeWiseMonkeys"; version="0.1.0"; sha256="1qdb3m15q0gg8dk2znc2syy2jdqsp2893a7ilfa8rg3r2vps86yg"; depends=[stringr tuneR]; }; Thresher = derive2 { name="Thresher"; version="1.1.3"; sha256="16zf5cwc2c5j61xcrqsycwrsc162spyqgk9mac7n37mymn5agbwp"; depends=[ade4 ClassDiscovery colorspace MASS movMF oompaBase PCDimension]; }; - ThresholdROC = derive2 { name="ThresholdROC"; version="2.9.0"; sha256="1mzz05aqq6crcfm5bbv0gbpvndk0yy1lf4fxz8zva790g16cilq0"; depends=[ks MASS numDeriv pROC]; }; + ThresholdROC = derive2 { name="ThresholdROC"; version="2.9.1"; sha256="1hainm0n5v9dc4q130r7jiica61p0pmnjnwh3v6i03djkvc2257l"; depends=[ks MASS numDeriv pROC]; }; ThresholdROCsurvival = derive2 { name="ThresholdROCsurvival"; version="1.1.1"; sha256="10bgjs0ybd4h4hhgh7mj0sk4xwwf49dp48gvqwhvdrm11k3b52vs"; depends=[boot InformativeCensoring pROC psych survival ThresholdROC]; }; - TiPS = derive2 { name="TiPS"; version="1.2.2"; sha256="1dh7rjxw35n96jcbf404qk14sh1w2zbrb9wf159n4pqdxa21kyn1"; depends=[gtools inline Rcpp stringr]; }; + TiPS = derive2 { name="TiPS"; version="1.2.3"; sha256="061lyai1kjm5glm69wxpnqvgp1xzj8j893pa73x5fl228dqm526f"; depends=[gtools inline Rcpp stringr]; }; TideCurves = derive2 { name="TideCurves"; version="0.0.5"; sha256="1cnfnmwmlicsi243058zq3302niwk2l1agrrjy4k7rf1v7gfy6xx"; depends=[chron data_table fields]; }; TideHarmonics = derive2 { name="TideHarmonics"; version="0.1-1"; sha256="1g1v99gh6mns4l8ipmw7kpalbk07m92ybcqjq7b0wsjmdvs1y67s"; depends=[]; }; TideTables = derive2 { name="TideTables"; version="0.0.3"; sha256="0xfwikz9f58pw1j5vp45wp44lbr8b8ijlac474nzahq46d411afp"; depends=[chron data_table]; }; Tides = derive2 { name="Tides"; version="2.1"; sha256="0da3z010ali83qf8mf1znicqv8vvsa5r93mc40ax60ln2w33nlrm"; depends=[]; }; TidyConsultant = derive2 { name="TidyConsultant"; version="0.1.0"; sha256="1ipv0nx0xmba62c7qjgadpjsr850d9dl0z5zjkh1rj6kfxdgiis2"; depends=[autostats badger framecleaner pacman presenter tidybins validata]; }; - TidyDensity = derive2 { name="TidyDensity"; version="1.2.4"; sha256="1dv035cj40817aya10vl8g9ij8wdxzxy2r2r3kfz44jhhynfr2hb"; depends=[actuar broom data_table dplyr ggplot2 magrittr nloptr patchwork plotly purrr rlang survival tidyr tidyselect]; }; + TidyDensity = derive2 { name="TidyDensity"; version="1.2.5"; sha256="1r55yjclnf0n88scscivhixymibiz6d5mki9si04nn50bjv9qp2n"; depends=[actuar broom data_table dplyr ggplot2 magrittr nloptr patchwork plotly purrr rlang survival tidyr tidyselect]; }; TidyMultiqc = derive2 { name="TidyMultiqc"; version="1.0.3"; sha256="1gnkq2ssc9lvkz1j52c2l4v1frxfcnw3j186kf3xbx8qx1aikyqr"; depends=[assertthat dplyr jsonlite magrittr purrr rlang stringr tibble]; }; TimeSeries_OBeu = derive2 { name="TimeSeries.OBeu"; version="1.2.4"; sha256="0ihigrbdkfbqqjxqfx3y5q8ii8n60301s7190jr50a88l1xzgmh8"; depends=[forecast jsonlite locfit trend tseries]; }; TimeVTree = derive2 { name="TimeVTree"; version="0.3.1"; sha256="124kg9zcq4b2j4qvg9f6gykbmzf69qjnnw54nv213ip2h4rdkv32"; depends=[survival]; }; @@ -5450,15 +5513,15 @@ in with self; { TransTGGM = derive2 { name="TransTGGM"; version="1.0.0"; sha256="0c815qp0nb4c8ymq9gm9yr37vkzlb6fja9j0czl6ww7rvr8fplrn"; depends=[doParallel expm glasso MASS Matrix rTensor Tlasso]; }; Tratamentos_ad = derive2 { name="Tratamentos.ad"; version="0.2.4"; sha256="15xba5g5b9rxpndgmhlnnq35xjic9v7ymgpyaaj6fn0kziphip84"; depends=[crayon]; }; TreatmentSelection = derive2 { name="TreatmentSelection"; version="2.1.1"; sha256="1pw64hx697jg2f1r2zd8y98g3ivj2gm8fnixcjfn4drsd0xixb4p"; depends=[binom ggplot2 survival]; }; - TreeBUGS = derive2 { name="TreeBUGS"; version="1.4.9"; sha256="1jr3xjdb909rlc698swpi5znmam2v73mp717vfg157df36930yj8"; depends=[coda hypergeo logspline MASS Rcpp RcppArmadillo rjags runjags]; }; + TreeBUGS = derive2 { name="TreeBUGS"; version="1.5.0"; sha256="0nxv2hh7flmyfm2pap97hwjyz29hfzybfv3b1v0ygqffgmh1j7mb"; depends=[coda hypergeo logspline MASS Rcpp RcppArmadillo rjags runjags]; }; TreeDep = derive2 { name="TreeDep"; version="0.1.3"; sha256="0ja2hp9sxzybac6dqdsns5q1rj12swl240znsnsffg9mkvzhq6rl"; depends=[ggplot2 lubridate]; }; TreeDiagram = derive2 { name="TreeDiagram"; version="0.1.1"; sha256="03kn9h37wgx300szzxmg21zc5iz3a9v8f2ydzv6dv6rhpa7yn0v5"; depends=[ape cowplot ggplot2 stringr tree]; }; TreeDimensionTest = derive2 { name="TreeDimensionTest"; version="0.0.2"; sha256="1bwvspjvc1cragbsrc05vhwk0zmfj36r9piqbj0vgahpjb4cswn9"; depends=[fitdistrplus igraph mlpack nFactors RColorBrewer Rcpp Rdpack]; }; - TreeDist = derive2 { name="TreeDist"; version="2.6.0"; sha256="0wm2lgz54ryclf72gfrsh58a2621f0hvsnwcvdwf2q53xw74b9gz"; depends=[ape cli colorspace memoise phangorn Rcpp Rdpack shiny shinyjs TreeTools]; }; - TreeSearch = derive2 { name="TreeSearch"; version="1.3.1"; sha256="0m6v8gpr5wi51h6gky65sik6xvvha2xf98bi1zfjnvsm99mm5s6h"; depends=[ape cli cluster fastmatch future promises protoclust Rcpp Rdpack Rogue shiny shinyjs TreeDist TreeTools]; }; + TreeDist = derive2 { name="TreeDist"; version="2.6.1"; sha256="0hv2fxvx9wml210dxq6bwzhn6vbn6qlhg2pi19fj47x9j65jx5q7"; depends=[ape cli colorspace memoise phangorn Rcpp Rdpack shiny shinyjs TreeTools]; }; + TreeSearch = derive2 { name="TreeSearch"; version="1.3.2"; sha256="00khyb7myppcmw4y1wxzlp3x6835p8rfi9vmyfzg86bs5wlqg5g1"; depends=[ape cli cluster fastmatch future PlotTools promises protoclust Rcpp Rdpack Rogue shiny shinyjs TreeDist TreeTools]; }; TreeSim = derive2 { name="TreeSim"; version="2.4"; sha256="0nmzx2723n1f5lr951zz2ih2gnpfim5qzihlayhpf181z1qijv93"; depends=[ape geiger]; }; TreeSimGM = derive2 { name="TreeSimGM"; version="2.5"; sha256="125c9rim272h0dfyygmmijz8dcnch3g9wy1ngki77dyrmdl77yfx"; depends=[ape TreeSim]; }; - TreeTools = derive2 { name="TreeTools"; version="1.9.1"; sha256="157xx91g2248ng868dxi692rh0w4b529yxay1cl1d8w65kym92b0"; depends=[ape bit64 colorspace fastmatch lifecycle R_cache Rcpp Rdpack]; }; + TreeTools = derive2 { name="TreeTools"; version="1.9.2"; sha256="1lbwgbhqnyq0iy49vnqfclfdsn1f47wpa42l2mgyi741pwfgqg4a"; depends=[ape bit64 colorspace fastmatch lifecycle PlotTools R_cache Rcpp Rdpack]; }; TrenchR = derive2 { name="TrenchR"; version="0.1.1"; sha256="03w010s3zxbrn7nh439d5mg1670k2hylci28i74q39b9235xn8vz"; depends=[deSolve msm Rdpack zoo]; }; TrendInTrend = derive2 { name="TrendInTrend"; version="1.1.3"; sha256="0ijkijyhxhjc7202qssa9wnrmwgv4miv5n8jbml4qqj80kcsbdwp"; depends=[nleqslv pracma pROC rms]; }; TrendSLR = derive2 { name="TrendSLR"; version="1.0"; sha256="1x8j2dg3m7b22gva33y4s318a41wl60sz93y868z4j65hp13jb5k"; depends=[changepoint forecast imputeTS plyr Rssa tseries zoo]; }; @@ -5473,11 +5536,12 @@ in with self; { TropFishR = derive2 { name="TropFishR"; version="1.6.3"; sha256="0nkw7dcb2kvgvvfla6ns60n460wsamwcp88281q6lyb6yb8k14bv"; depends=[doParallel GA GenSA MASS Matrix msm reshape2]; }; TroublemakeR = derive2 { name="TroublemakeR"; version="0.0.1"; sha256="01w6ffbj4m7yy9g0p9xbijyhms54sf2l855jm5rl0irvxlanp2s4"; depends=[purrr terra]; }; TrtCombo_FactorialExp_SR = derive2 { name="TrtCombo.FactorialExp.SR"; version="4.0.4"; sha256="1kc5nqivsia801hdll5zcl4w6ayx7pabx7xz70l75h1f966ahnr7"; depends=[]; }; - TrueSkillThroughTime = derive2 { name="TrueSkillThroughTime"; version="0.1.0"; sha256="1ak7w10qss1jlf8gy4sri678nqcw6rc79kwr6anqcjxick1000j9"; depends=[hash]; }; + TrueSkillThroughTime = derive2 { name="TrueSkillThroughTime"; version="0.1.1"; sha256="0d5zq3aniqm06qq9pzns5q8223gp33gp0f5273z01xd43mn6ggjn"; depends=[hash]; }; TruncExpFam = derive2 { name="TruncExpFam"; version="1.0.0"; sha256="0059afyfvzliwpw4l1846yxcpqqdy9c2kk0xa0fl5nxh89c2hr7v"; depends=[invgamma rmutil]; }; TruncatedNormal = derive2 { name="TruncatedNormal"; version="2.2.2"; sha256="05cfn7mdq0hgw97bbb227in9ccjz727sp67xpnpx2r1ajvl6gxdf"; depends=[alabama nleqslv randtoolbox Rcpp RcppArmadillo]; }; TrustVDJ = derive2 { name="TrustVDJ"; version="0.1.0"; sha256="154fawx32v2gdvfdyssj04h1y0q2zc2wn4ww4nzaf0nlwbvc2z6v"; depends=[Biostrings data_table rvest]; }; TukeyC = derive2 { name="TukeyC"; version="1.3-4"; sha256="1ly09pll86zkn6m8rc6d66f3d7hf98fiij0psaigq6wdgf5an8ig"; depends=[doBy xtable]; }; + TukeyRegion = derive2 { name="TukeyRegion"; version="0.1.6.3"; sha256="02w84bha6niyval71a06ibk42crvv2259302ckdzmb61ik9sg44d"; depends=[bfp BH ddalpha MASS Rcpp rgl Rglpk]; }; TunePareto = derive2 { name="TunePareto"; version="2.5.2"; sha256="1zv467ddy8fsyj4473jyj5cwm7gx3n30py2y7wlqgwbxpfsgxn09"; depends=[]; }; TurtleGraphics = derive2 { name="TurtleGraphics"; version="1.0-8"; sha256="0h77pj7rs3lrqi1y2dm1cbrmj13mjpq6y5nw8bcq0s2kbnkfw67l"; depends=[]; }; Tushare = derive2 { name="Tushare"; version="0.1.4"; sha256="0am3bq62ar5p5nv8gapbvh4ix150pskdrhda48lmcg0ii3l0qh9g"; depends=[data_table forecast httr tidyverse]; }; @@ -5485,16 +5549,15 @@ in with self; { TwitterAutomatedTrading = derive2 { name="TwitterAutomatedTrading"; version="0.1.0"; sha256="1aa6fxxvy0s8al30w19wa2pwzp60zbbdvp5myigv8x26k6w2jwgv"; depends=[curl dplyr jsonlite lubridate magrittr naptime plyr purrr tibble tidytext twitteR]; }; TwoArmSurvSim = derive2 { name="TwoArmSurvSim"; version="0.2"; sha256="0isb1nmm6hxwn6p52an1axj30ilkr5c8xi86zx2b8acivdz2xr12"; depends=[blockrand dplyr simsurv survival]; }; TwoPhaseInd = derive2 { name="TwoPhaseInd"; version="1.1.2"; sha256="1ifdj17rlr8nd0pqpcqi6835ymdhngif279i27s6lvwha924l81c"; depends=[survival]; }; - TwoRegression = derive2 { name="TwoRegression"; version="1.0.0"; sha256="0mpgdz7swrzabpf835pawlwvbzqajc329whcsxddwq4l6c71sb11"; depends=[dplyr ggplot2 gridExtra lubridate magrittr PAutilities pROC RcppRoll rlang tidyr]; }; TwoSampleTest_HD = derive2 { name="TwoSampleTest.HD"; version="1.2"; sha256="1mvrlvcdllk7mxfsmahgb3iq7ndlnc4xg1536c1mxphxlh5qxwp0"; depends=[]; }; TwoStepCLogit = derive2 { name="TwoStepCLogit"; version="1.2.5"; sha256="050y7na91izg36gkwd8yn8rx3r39dk6qlvhd3137f3jnk4v00bck"; depends=[survival]; }; - TwoWayFEWeights = derive2 { name="TwoWayFEWeights"; version="0.1.0"; sha256="0zjbh24jm77vj62rw433dqy57m0hciaw1l2l7x6hpzn34iggdwwv"; depends=[dplyr estimatr fixest rlang stringr]; }; UBCRM = derive2 { name="UBCRM"; version="1.0.2"; sha256="0cfdgarlks0hkx4fnlm0i2fwpl057vxq58n3xfv718w3cs2nx9wc"; depends=[]; }; UBL = derive2 { name="UBL"; version="0.0.7"; sha256="1zppc8mgmj4ymxfdvhqiirlf80wh65y58wqm92fgjdn7s06v5skf"; depends=[automap gstat MBA randomForest sp]; }; UBayFS = derive2 { name="UBayFS"; version="1.0"; sha256="1aj627f8w30wfnf313adza85jffnp1yq34ri8cfaz5v0jzs1bfib"; depends=[DirichletReg GA ggplot2 gridExtra hyper2 matrixStats mRMRe Rdimtools shiny]; }; UCR_ColumnNames = derive2 { name="UCR.ColumnNames"; version="0.1.0"; sha256="1nwwq93f60r9aik51l7mzckg81f81nz5kgzynyzp5sm4y2wmpzwn"; depends=[]; }; UCSCXenaShiny = derive2 { name="UCSCXenaShiny"; version="1.1.10"; sha256="1jnmi3d1h31fx50lrsb1nl49p50jrx0vxmjsg6q6wdhwjnfxizd9"; depends=[dplyr ezcox forcats ggplot2 ggpubr magrittr ppcor psych purrr shiny stringr tibble tidyr UCSCXenaTools]; }; UCSCXenaTools = derive2 { name="UCSCXenaTools"; version="1.4.8"; sha256="0w0rps6jsiw67k6h8j1g0nqzwwhl1kb2by90xd4w61i71vk0fda7"; depends=[digest dplyr httr jsonlite magrittr readr rlang]; }; + UComp = derive2 { name="UComp"; version="4.0.2"; sha256="0k89palrdifgrz45ar3dcnrwpxwb01nqsg9k1qkwrilhyj9c254k"; depends=[ggforce ggplot2 gridExtra Rcpp RcppArmadillo tsibble tsoutliers]; }; UKB_COVID19 = derive2 { name="UKB.COVID19"; version="0.1.3"; sha256="053hsdaa7xnzk95bdp0i1jr6pzq50zvfn1m5sm0znsrk59m5xhgm"; depends=[data_table dplyr here magrittr questionr tidyverse]; }; UKFE = derive2 { name="UKFE"; version="0.2.8"; sha256="0a1y4qcawbnzjj0f2na9gnha9559lrqasb6jffqhwhv206wkm2z1"; depends=[xml2]; }; UKgrid = derive2 { name="UKgrid"; version="0.1.3"; sha256="1x44iry2j5qbvd8ac9rv9dmg60hbhry2v4jj9hmm49bx10iwl9h2"; depends=[data_table dplyr lubridate magrittr tsibble xts zoo]; }; @@ -5503,15 +5566,15 @@ in with self; { UNCOVER = derive2 { name="UNCOVER"; version="1.0.0"; sha256="010y2vj55bfyhsn0lkmafi3cbq183m85vqk1pya82hp10qxpp6q2"; depends=[cachem crayon GGally ggnewscale ggplot2 ggpubr igraph memoise mvnfast scales]; }; UNPaC = derive2 { name="UNPaC"; version="1.1.1"; sha256="1dqli7fanh0gk2bfbcykrrswyjrl9g4rbplxjxgjri7kkmf03cd0"; depends=[huge PDSCE]; }; UPCM = derive2 { name="UPCM"; version="0.0-3"; sha256="1apah04qdgvxxf6q6xr53716pcrmds86sn8f7ykxj93ggg8k0bvl"; depends=[cubature ltm mvtnorm numDeriv Rcpp RcppArmadillo statmod]; }; - UPG = derive2 { name="UPG"; version="0.3.1"; sha256="1rhf31smc25ip42id331vnqhaqwvi01b5g3kvlrnzkficgfrdbdf"; depends=[coda ggplot2 knitr matrixStats mnormt pgdraw reshape2 truncnorm]; }; + UPG = derive2 { name="UPG"; version="0.3.2"; sha256="09lalflqsl8rg1pfsg5v05wcqp77y29dcjiwxvcd0pgchx5d3x79"; depends=[coda ggplot2 knitr matrixStats mnormt pgdraw reshape2 truncnorm]; }; UPMASK = derive2 { name="UPMASK"; version="1.2"; sha256="160rsb0nbndf61khcs3s8xv9nj7ln8zl6l11157ywdcjqd2q5qnq"; depends=[DBI dimRed loe MASS RSQLite]; }; UPSvarApprox = derive2 { name="UPSvarApprox"; version="0.1.3"; sha256="14wjcr06gd1fphl6cdqkb5i1rfwamfbz4x4qn5zxklir88a6h1h4"; depends=[]; }; USA_state_boundaries = derive2 { name="USA.state.boundaries"; version="1.0.1"; sha256="0pdqnfpijs9n1vxkngs3mm5q9dwqfmlkm60jq8isxcd9fiadsig6"; depends=[]; }; USP = derive2 { name="USP"; version="0.1.2"; sha256="1fngs82r1xbym8qa1lj9jv1i57r3nx9rr093nfpjl82f7r0kr3sn"; depends=[Rdpack]; }; UScensus2010 = derive2 { name="UScensus2010"; version="0.20.0"; sha256="0dby532dmmhaz7gisihg4dn70jyx5llfvm2zl2h0pxyqrxvm69d2"; depends=[foreign maptools sp]; }; - USgas = derive2 { name="USgas"; version="0.1.1"; sha256="1yx5qc7ilb1g2cv9w35ryw778qbi9fs0licxc2xcp5fbp709pd65"; depends=[]; }; + USgas = derive2 { name="USgas"; version="0.1.2"; sha256="13aqwwigscvnvp55pmbx2z2ypqgw2ph35c4r6chwcqzsgz32zihq"; depends=[]; }; USgrid = derive2 { name="USgrid"; version="0.1.2"; sha256="0babwjnbdyfa2cf65gn08nzy1bs92i56lnhpx558yn0dyk75cz5s"; depends=[tsibble]; }; - USpopcenters = derive2 { name="USpopcenters"; version="0.1.1"; sha256="1g7pnw4qfp4vpcb9wr3bjl5702lwnv6fvdjgsv90r4ana1rkw3c6"; depends=[]; }; + USpopcenters = derive2 { name="USpopcenters"; version="0.2.0"; sha256="0x3908g399zp03l78d53490rmciq66k8v85hyqircf4z0hfbaxja"; depends=[]; }; UStatBookABSC = derive2 { name="UStatBookABSC"; version="1.0.0"; sha256="16r6clhfaalfsg5hmvzm8a128zygxax5hyc0vr1q9bsw9hj7cs0c"; depends=[]; }; UWHAM = derive2 { name="UWHAM"; version="1.1"; sha256="162manvbmlvf8pqhcda9wx17nrdcwscb88ny2r7cvag3j04yxl54"; depends=[trust]; }; UdderQuarterInfectionData = derive2 { name="UdderQuarterInfectionData"; version="1.0.0"; sha256="084bq5ai1ccp4www64z0ipic74zkd8j1ygv0py900164a25wdr9b"; depends=[]; }; @@ -5531,14 +5594,14 @@ in with self; { UpSetVP = derive2 { name="UpSetVP"; version="1.0.0"; sha256="1v6djfwaix978vzfjnj0vd3r0m3svfqkn9aqnf9qz2xsjk43m9zr"; depends=[ggplot2 patchwork rdacca_hp]; }; UsingR = derive2 { name="UsingR"; version="2.0-7"; sha256="17ljllslhfmi80yj1336lx9pmzy2i8zdb6byky5yay1lry7s1g30"; depends=[HistData Hmisc MASS]; }; UtilityFrailtyPH12 = derive2 { name="UtilityFrailtyPH12"; version="1.0"; sha256="06f5gmwwk1r14ab6v5jcxz0pmdph7ffi4y57mjg9byn7pjnibflk"; depends=[bindata mvtnorm Phase123 Rcpp RcppArmadillo]; }; - V8 = derive2 { name="V8"; version="4.2.2"; sha256="0friwpw3cbg40hfsqnlp8g3a6l4zhfag6lh005ya6dw634kkarah"; depends=[curl jsonlite Rcpp]; }; + V8 = derive2 { name="V8"; version="4.3.0"; sha256="1l70vdqcagp9cdyxa231gk33z5blsg96j0l28zbaklnhmr7mqfby"; depends=[curl jsonlite Rcpp]; }; VAJointSurv = derive2 { name="VAJointSurv"; version="0.1.0"; sha256="19ib4b1kf1zg4l571f2asxkwbab44pzs954agj0wx1p6kb2v608q"; depends=[lme4 Matrix psqn Rcpp RcppArmadillo RcppEigen SimSurvNMarker survival testthat]; }; VALERIE = derive2 { name="VALERIE"; version="1.1.0"; sha256="15z8234jhh7hv3gijrvy8hap6gdgvm6qll9b00qbji7vyc3dg4pg"; depends=[GenomicAlignments GenomicRanges ggplot2 ggplotify ggpubr IRanges pheatmap plyr Rsamtools scales]; }; VALIDICLUST = derive2 { name="VALIDICLUST"; version="0.1.0"; sha256="1glcvzrbc7glxmbmas3zzb114a5cfl7gsf7xlxaifrrgvcahrvnx"; depends=[diptest dplyr]; }; VAM = derive2 { name="VAM"; version="1.0.0"; sha256="04lq8i4zwdc9a4n4hvabdyv4a4cmmqbf534cdnnck7jc0dk5rphr"; depends=[MASS Matrix]; }; VAR_etp = derive2 { name="VAR.etp"; version="1.0"; sha256="0pm2m1wwsyrfwvqibf4mn6wbnslynvb1964i79iqhy5qp4nflajp"; depends=[]; }; VARDetect = derive2 { name="VARDetect"; version="0.1.6"; sha256="1yrlyg4b53bdmfjcqi07l0gr3f01h8jwj6g6av3plyk96cvl4svb"; depends=[igraph lattice MTS mvtnorm pracma Rcpp RcppArmadillo sparsevar]; }; - VARSELECTEXPOSURE = derive2 { name="VARSELECTEXPOSURE"; version="1.0.1"; sha256="04gx4by4xwyn9safk8mh5alrzs8ikh03mgqsix1ms9kmywkfd8n8"; depends=[Rcpp RcppArmadillo]; }; + VARSELECTEXPOSURE = derive2 { name="VARSELECTEXPOSURE"; version="1.0.3"; sha256="0hfcy00zynrg2vfqym17zfs3ggm4wvsvjf2qib4pbd53qfhzabwa"; depends=[Rcpp RcppArmadillo]; }; VARshrink = derive2 { name="VARshrink"; version="0.3.1"; sha256="09hysmxxawcbyfx6bia546aqydryl2r5p3ai7bvl6ghdckw5mnpl"; depends=[ars corpcor MASS mvtnorm strucchange vars]; }; VBLPCM = derive2 { name="VBLPCM"; version="2.4.9"; sha256="13qwqpnhdxd5lriz5p4w1dcng7msxbm4z2lfj93w7wcwidl93jw9"; depends=[ergm mclust network sna]; }; VBV = derive2 { name="VBV"; version="0.6.2"; sha256="1nrdcvkdv38xl67qi9igcp3l5j4hckiyg3klg7z0rfj6zzpszm71"; depends=[]; }; @@ -5576,23 +5639,24 @@ in with self; { VTShiny = derive2 { name="VTShiny"; version="0.1.0"; sha256="1zq6irla3q7hqs8jpjdya7vy3frqrj72rwmd1sgxwrkgpmpxw6x7"; depends=[EnvStats rmarkdown shiny]; }; VUROCS = derive2 { name="VUROCS"; version="1.0"; sha256="1r4hq7az50v7lbyx5w6b4zs2kwi5cypqn9k6ac4kr8jr3jlyanr3"; depends=[doParallel foreach Rcpp RcppArmadillo]; }; VWPre = derive2 { name="VWPre"; version="1.2.4"; sha256="1hhpqxzh9h5dy45r04l1fa1k4a14s0m6z6fhfg22kpwpryszbc44"; depends=[dplyr ggplot2 mgcv rlang shiny tidyr]; }; + VaRES = derive2 { name="VaRES"; version="1.0.2"; sha256="0k65ip5q4zgyklvn8mbc1ykz7kpfr5xvz041g1pq88f43g2sgv4b"; depends=[]; }; VancouvR = derive2 { name="VancouvR"; version="0.1.7"; sha256="12njm15ah307rsncnmckpx05d4cncqj0paa40xdgp7mfz821s36c"; depends=[digest dplyr httr purrr readr rlang sf tibble urltools]; }; VarED = derive2 { name="VarED"; version="1.0.0"; sha256="16j9p2a143y4hqclsv1mig0fccrzjx2r0lll0wz8isjp9x1wzjv8"; depends=[]; }; VarRedOpt = derive2 { name="VarRedOpt"; version="0.1.0"; sha256="0h44m8850q4aksrqj11yr2a2qj37w8fhv0plpvdzcl087ifyj0g9"; depends=[]; }; - VarReg = derive2 { name="VarReg"; version="1.0.2"; sha256="04235hr0r6sp7r3ccvcfb8l6p8yapcdrn6zl7mmvbyc4qb70gawh"; depends=[sn survival]; }; + VarReg = derive2 { name="VarReg"; version="2.0"; sha256="06n8bb4h722k1d83hbzgjasl9jrcj7pwj895zdkkdalw7crim88m"; depends=[sn survival]; }; VarSelLCM = derive2 { name="VarSelLCM"; version="2.1.3.1"; sha256="03rg7zh1cq55vfc0ak6j7crs4n7fnbsxz8nllmplklx8wm47krf5"; depends=[ggplot2 mgcv Rcpp RcppArmadillo shiny]; }; VarfromPDB = derive2 { name="VarfromPDB"; version="2.2.10"; sha256="09j8y6n0bwsj3n620nbni6b7f4pmb91q41770sfpc5v3l5i3jc7c"; depends=[curl RISmed stringi stringr XML XML2R]; }; VariableScreening = derive2 { name="VariableScreening"; version="0.2.1"; sha256="0djfpv46fhc3x4jvmjr93lyh4fxfzzvyrs3wjncx3h0z0s9n6w45"; depends=[energy expm gee MASS]; }; VarianceGamma = derive2 { name="VarianceGamma"; version="0.4-0"; sha256="0n3vmyxfn0sid6zax4n8508li7gnfdd4gghpf3i296dm3w8wn8ip"; depends=[DistributionUtils GeneralizedHyperbolic]; }; VecStatGraphs2D = derive2 { name="VecStatGraphs2D"; version="1.8"; sha256="0jjxdwcj0n6kk5l7hw4zibpikqxhkkik5819qv75z4gqdgg0fgch"; depends=[MASS]; }; - VedicDateTime = derive2 { name="VedicDateTime"; version="0.1.2"; sha256="0xhjw29zn2nmm6xq6s5j6ff9hfqh66q3zclga1w29vpcj7l7jb80"; depends=[swephR]; }; + VedicDateTime = derive2 { name="VedicDateTime"; version="0.1.4"; sha256="0rympbzj1iaksh512frb305gsk531zbwqj8cgaji1c1gikg1jaj7"; depends=[swephR]; }; VennDiagram = derive2 { name="VennDiagram"; version="1.7.3"; sha256="0ilcxcp8qskmb5cp7fyb7i0qizg42lrx0ny8ws3if90kfrglghp7"; depends=[futile_logger]; }; VertexSimilarity = derive2 { name="VertexSimilarity"; version="0.1"; sha256="0f638y272dbmz5747wxqy9pxasxk3a9f9wf31gf297qx7268ab1m"; depends=[igraph]; }; VertexSort = derive2 { name="VertexSort"; version="0.1-1"; sha256="0n9m5l85ylin6756rsksak94nv0626qd7czhhj6plz4nfrr27sgl"; depends=[igraph snowfall]; }; - VeryLargeIntegers = derive2 { name="VeryLargeIntegers"; version="0.1.9"; sha256="08gpsi6vrink2dd1ngwbhi8yxrasgh0xi5klc64v7ig49hky9wma"; depends=[Rcpp]; }; + VeryLargeIntegers = derive2 { name="VeryLargeIntegers"; version="0.2.1"; sha256="1a6hyipn9522zj69amlxmqip45gflml5kcyjlxi4vf4y1givb7qs"; depends=[Rcpp]; }; VetResearchLMM = derive2 { name="VetResearchLMM"; version="1.0.0"; sha256="1a7wm04bsr5shak7l8ypxlhlnx3qkq1jdpjnji1n05p6b00ih9h1"; depends=[ggplot2 lme4 lmerTest multcomp nlme]; }; ViSiElse = derive2 { name="ViSiElse"; version="1.2.2"; sha256="1ay09dahlqnfrgf4gl4s45a4ahrk2xliagxqz5h826w2vzsawqcc"; depends=[chron colorspace ggplot2 Matrix reshape2 stringr]; }; - VicmapR = derive2 { name="VicmapR"; version="0.1.10"; sha256="0g67xq367k29x8jhms5zx3jicjxyg9chxnj7pv5kj8yxhxy19cyr"; depends=[cli curl DBI dbplyr dplyr glue httr kableExtra knitr leaflet lubridate magrittr mapview purrr rlang rvest sf xml2]; }; + VicmapR = derive2 { name="VicmapR"; version="0.2.0"; sha256="0p10vj9d4x1ffv138zpr0c9lmlm23mxc6jm1yhyyf3xlivjmj45b"; depends=[cli curl DBI dbplyr dplyr glue httr kableExtra knitr leaflet lubridate magrittr mapview purrr rlang rvest sf stringr xml2]; }; Vicus = derive2 { name="Vicus"; version="0.99.0"; sha256="1f4vmz34gms0vbvpn94rgdhbbvxbqmjxzhd9n4fxfm0dizmba004"; depends=[Matrix RANN RSpectra]; }; ViewPipeSteps = derive2 { name="ViewPipeSteps"; version="0.1.0"; sha256="0lcm7zzflbbjpb1mdy6pppdmg9gvlcn7hg42a4fgm0kxhniwnmyg"; depends=[dplyr rstudioapi tibble]; }; VineCopula = derive2 { name="VineCopula"; version="2.4.5"; sha256="1k9k3kwzw7pdmr3hkhafyaqvnn2g5syys74r9kqcn9fm2iyzdf86"; depends=[ADGofTest lattice MASS mvtnorm]; }; @@ -5614,6 +5678,7 @@ in with self; { WASP = derive2 { name="WASP"; version="1.4.3"; sha256="1w822wl8zp94a60y9jsryc1r1m025pl2100fx5i8np46mm3pmn58"; depends=[ggplot2 rlang sp tidyr waveslim]; }; WCE = derive2 { name="WCE"; version="1.0.2"; sha256="105pwpd9ikm0gwz4r12jl6cgs1riwsk9pn5qk9cn3msgwa0sdynx"; depends=[plyr survival]; }; WCM = derive2 { name="WCM"; version="0.2.2"; sha256="0w1m2vcxc64ksw3dm94wdigil2fpv3cvzyqmkhs2zrfjlgrdchcd"; depends=[pracma raster]; }; + WCluster = derive2 { name="WCluster"; version="1.1.0"; sha256="1crzhg0kldmyamxvj5wf3ik9x36sm1nw9kd6jgpnb0jdqlx2pd2s"; depends=[cluster datanugget]; }; WDI = derive2 { name="WDI"; version="2.7.8"; sha256="1q7d74y3vi13zmpinky4ayn0n292rslg7fd112hxvjiqbmq6mxdc"; depends=[jsonlite]; }; WEGE = derive2 { name="WEGE"; version="0.1.0"; sha256="17g4cgx0ajgj7lgxzi467cjbmbc47skyarcm88vqjc3i1j55dw12"; depends=[raster sf sp]; }; WGCNA = derive2 { name="WGCNA"; version="1.72-1"; sha256="1p3zsl5r6l5r6ylnrxmbxjpim5qgmncgdjcgn5j69rzk3rv85gqx"; depends=[AnnotationDbi doParallel dynamicTreeCut fastcluster foreach GO_db Hmisc impute matrixStats preprocessCore Rcpp survival]; }; @@ -5630,7 +5695,7 @@ in with self; { WRSS = derive2 { name="WRSS"; version="3.1"; sha256="0fhmdnkk94m1bqm1i69szv3ycbkzr08xy30mwpqvbij9nh2sqj0w"; depends=[GGally ggplot2 Hmisc network nloptr]; }; WRTDStidal = derive2 { name="WRTDStidal"; version="1.1.2"; sha256="1ssrqqf2hypif4nnfyl4lq03glyyg9ry9s14llf1njxamhjggfgg"; depends=[caret dplyr fields foreach forecast ggplot2 gridExtra lubridate purrr quantreg RColorBrewer survival tidyr]; }; WSGeometry = derive2 { name="WSGeometry"; version="1.2.1"; sha256="073cvvbhzx5nllrwfyz6bxvskmkm88i7wq93m2d0q60pzwzsxwzl"; depends=[expm imager lpSolve Matrix plot3D Rcpp RcppArmadillo RSpectra transport]; }; - WVPlots = derive2 { name="WVPlots"; version="1.3.2"; sha256="07gwb984mmfwi9b7m44d60f787szw089xlvqwclpkpjgz677k1cg"; depends=[cdata ggplot2 gridExtra mgcv rqdatatable rquery sigr wrapr]; }; + WVPlots = derive2 { name="WVPlots"; version="1.3.3"; sha256="1bkyy0b8p6l84zr6y292mwjccqmxy6qzchvkx1610r3vj4mn5np1"; depends=[cdata ggplot2 gridExtra mgcv rlang rqdatatable rquery sigr wrapr]; }; WWGbook = derive2 { name="WWGbook"; version="1.0.2"; sha256="05dzgb2b1md981882sp85dvmrsak5v7gwkww1shqfm34zmk9dbkn"; depends=[]; }; WWR = derive2 { name="WWR"; version="1.2.2"; sha256="0ia1dd12r1l08s9nhgvk55jmqwv58jawm25gd2ni6wpa3mcmq02g"; depends=[inline]; }; WaMaSim = derive2 { name="WaMaSim"; version="1.0.0"; sha256="0sa7qd2bpn3sp06mlpissxxkfhg7j1d07nnwlnz7nyg7pivwnpan"; depends=[magrittr]; }; @@ -5643,8 +5708,11 @@ in with self; { WaveletComp = derive2 { name="WaveletComp"; version="1.1"; sha256="07w2aa0jiflvxyqhgh48705hg8hjspd103jd00i2pcw2v42hwmf8"; depends=[]; }; WaveletETS = derive2 { name="WaveletETS"; version="0.1.0"; sha256="1cxzhmyhvq7ip32csqlxzfxx6gxnwn49vvm8xx3idal4nkdlids1"; depends=[caretForecast dplyr forecast Metrics tseries wavelets]; }; WaveletGARCH = derive2 { name="WaveletGARCH"; version="0.1.1"; sha256="0dj5bmvzfhj1cpn8qi2ax3iipr7jlq0f9vk4b1idqgh5dmdi8lh6"; depends=[FinTS forecast fracdiff rugarch wavelets]; }; + WaveletGBM = derive2 { name="WaveletGBM"; version="0.1.0"; sha256="0jilj6mgq6wb6a5zb4j9backfgyf38w687ppbyfsz40263srj081"; depends=[caret caretForecast dplyr gbm Metrics tseries wavelets]; }; WaveletKNN = derive2 { name="WaveletKNN"; version="0.1.0"; sha256="1pr2w74r9qrbwdhacqa4xbyk5xd33sk208slgaq4dydbx3ndh5wp"; depends=[caret caretForecast dplyr Metrics tseries wavelets]; }; + WaveletLSTM = derive2 { name="WaveletLSTM"; version="0.1.0"; sha256="1imf51ihwhzga6xscqh5lawyrx3smk6czxpmyahxgd696xg70c1q"; depends=[caret caretForecast dplyr tseries TSLSTM wavelets]; }; WaveletML = derive2 { name="WaveletML"; version="0.1.0"; sha256="0y3aclnrjk3zhw3ls00iwjif1ghdnfjhhglf37kr7f7alqbqg0ax"; depends=[aTSA caret e1071 earth fGarch FinTS forecast LSTS neuralnet pso tseries wavelets]; }; + WaveletMLbestFL = derive2 { name="WaveletMLbestFL"; version="0.1.0"; sha256="0qz5c3w7d0vyxfdvs28cr02ilsiac3nlmc206j7qm9pr735lcrj0"; depends=[CEEMDANML DescribeDF WaveletML]; }; WaveletRF = derive2 { name="WaveletRF"; version="0.1.0"; sha256="08czmifw1dz2arz9f4jk76vlwwnf24ha9pm3dfihqkxjcc16dkgz"; depends=[forecast fracdiff randomForest tsutils wavelets]; }; WaveletSVR = derive2 { name="WaveletSVR"; version="0.1.0"; sha256="05sqvqklbz7barf1jfrhd7n4mj60z57sqpikl3lykigl3m9ravhm"; depends=[e1071 forecast fracdiff tsutils wavelets]; }; WaverR = derive2 { name="WaverR"; version="1.0"; sha256="084fhzggzm075w6wp2lqd3j0an21idhw8z5l8ynz4y96mpmn204a"; depends=[kimisc MASS]; }; @@ -5652,19 +5720,22 @@ in with self; { WeMix = derive2 { name="WeMix"; version="4.0.0"; sha256="19f655crg6zqbrlrcj7skp1qrxkn6fjahirvniy1b3xxikg84wvg"; depends=[lme4 Matrix matrixStats minqa NPflow numDeriv Rmpfr statmod]; }; WebAnalytics = derive2 { name="WebAnalytics"; version="0.9.5"; sha256="1fas6pj9xqxdm2ln825bgghycn7226z6ha09d6a93w53m789dcby"; depends=[brew data_table digest fs ggplot2 reshape2 scales tinytex uaparserjs xtable]; }; WebGestaltR = derive2 { name="WebGestaltR"; version="0.4.5"; sha256="02skrnma0q08p32a03yzflf6fpwdc9ldais7pdkjvdnnqf8jvd5h"; depends=[apcluster doParallel doRNG dplyr foreach httr igraph jsonlite Rcpp readr rlang svglite whisker]; }; - WebPower = derive2 { name="WebPower"; version="0.8.7"; sha256="1ikdg4l9l95pygkn51ig0pl4bnvi4nn7vmgcfg4g3mnqcdzhybgw"; depends=[lavaan lme4 MASS PearsonDS]; }; + WebPower = derive2 { name="WebPower"; version="0.9.3"; sha256="1530jz99dvp79bk57mfyyd0iam7wf0pjz8d5msyy852zcqym5hrp"; depends=[dplyr lavaan lme4 MASS PearsonDS]; }; WeibullFit = derive2 { name="WeibullFit"; version="0.1.0"; sha256="1a80gcqbmvb1rz2dr2syy16wn6ixjn6l40gayys9zy8302hky9ir"; depends=[e1071 FAdist glue kSamples mixdist optimx R_methodsS3 R_oo sqldf xtable]; }; WeibullR = derive2 { name="WeibullR"; version="1.2.1"; sha256="1i83dhd6202myfgsjwc3h68dflfvd74zjskvchbzd2407a30m8n7"; depends=[Rcpp RcppArmadillo]; }; WeibullR_ALT = derive2 { name="WeibullR.ALT"; version="0.7.2"; sha256="153zxw20gwv5rx5cxmygl97nv1c2pxb3yczmqvjxq7vwwxl04gr9"; depends=[WeibullR]; }; - WeightIt = derive2 { name="WeightIt"; version="0.13.1"; sha256="0z32v7p59c1xb3rfcgb76gl3kyxz0ayqg3q0cjs9pb1x4wjdhl8f"; depends=[backports cobalt crayon ggplot2]; }; + WeightIt = derive2 { name="WeightIt"; version="0.14.2"; sha256="13gjmywqdrbyfrjx0lmizhsg8wbrb3frwks2hw7k387yjllzbvsb"; depends=[backports chk cobalt crayon ggplot2 rlang]; }; WeightSVM = derive2 { name="WeightSVM"; version="1.7-11"; sha256="0sbf81j579k46bg11wv987ax7ncfmp6sy61w6ydk1dr9hcfjv3s9"; depends=[]; }; Weighted_Desc_Stat = derive2 { name="Weighted.Desc.Stat"; version="1.0"; sha256="030i12mnwlj976avvk3grrccgprsckmc35dm2ajwdfc9dijhypnj"; depends=[]; }; - WeightedCluster = derive2 { name="WeightedCluster"; version="1.6-0"; sha256="1hrwvfiyqcxf864isf2qvhszmgwv9rabyly0ipkskjhi8cyx8h9j"; depends=[cluster RColorBrewer TraMineR]; }; + WeightedCluster = derive2 { name="WeightedCluster"; version="1.6-2"; sha256="07gjy9yjm9axv4dbv9636m03alkxk4jjfxwqxh7fcxjzy40zvqg1"; depends=[cluster doFuture foreach future progressr RColorBrewer TraMineR]; }; + WeightedEnsemble = derive2 { name="WeightedEnsemble"; version="0.1.0"; sha256="0lvi8362fpmybm1icdp63ys5pdsa2qc54bsdwp7345xk7jmqzh1v"; depends=[metaheuristicOpt]; }; + WeightedPortTest = derive2 { name="WeightedPortTest"; version="1.1"; sha256="0kv9ip38l659cwqkw6l831za2y2610w4cxpw1jxsph0h2qdfm8fx"; depends=[]; }; WeightedROC = derive2 { name="WeightedROC"; version="2020.1.31"; sha256="1f43hwsabciraj1qxfh5wcqnnx1vvcf4pwqs376rcfd9161k15xv"; depends=[]; }; WgtEff = derive2 { name="WgtEff"; version="0.1.2"; sha256="1z8pndv43ssgmzldwaq0088lmf1g2mkmrbmzyaismcpngn9fqxsk"; depends=[]; }; WhatIf = derive2 { name="WhatIf"; version="1.5-10"; sha256="19w5qw123iahrx96379lrx8i7v3x2ck5dhklf58iw0dmj4pfy2kg"; depends=[lpSolve pbmcapply]; }; + WhatsR = derive2 { name="WhatsR"; version="1.0"; sha256="1cc3ylfy9zbg6drx26g9rx3vak72scgwz5p3pl1m176kznypqxsz"; depends=[anytime checkmate data_table dplyr ggmap ggplot2 ggwordcloud lubridate mgsub qdap qdapRegex ragg readr rvest stringi tokenizers visNetwork XML xml2]; }; WhiteStripe = derive2 { name="WhiteStripe"; version="2.4.2"; sha256="1w9shk9qx365pxi2nglvjd26xggylswd83aclg7l45q0dlli3x31"; depends=[mgcv neurobase oro_nifti]; }; - WienR = derive2 { name="WienR"; version="0.3-8"; sha256="0ygh3khhwvlx86vjr6anlc12jpx13jma6hrannp9jvcip9vhxykv"; depends=[]; }; + WienR = derive2 { name="WienR"; version="0.3-10"; sha256="1nj2jki1r9agpfmfrx4j2x55j0rgxnk3wwbygw0cnvygdd09lpym"; depends=[]; }; WikidataQueryServiceR = derive2 { name="WikidataQueryServiceR"; version="1.0.0"; sha256="1bl1nbhbmss8cj9ni7plsjs996n4rwqv6h8bh1zj4whs8z4fw50f"; depends=[dplyr httr jsonlite purrr ratelimitr readr rex WikipediR]; }; WikidataR = derive2 { name="WikidataR"; version="2.3.3"; sha256="120833b7zyq1rhmn9c8iv0j6br60af7gbn5lc4dil55qhh2lp9rx"; depends=[crayon dplyr Hmisc httr jsonlite pbapply progress readr stringr tibble WikidataQueryServiceR WikipediR]; }; WikipediR = derive2 { name="WikipediR"; version="1.5.0"; sha256="1w4ggq42vlq7zbrz3v9ripz9yscbd8m8as60q7cplpxn9zqfdl7q"; depends=[httr jsonlite]; }; @@ -5676,7 +5747,7 @@ in with self; { WordOfMouth = derive2 { name="WordOfMouth"; version="1.1.0"; sha256="199hnirbmwarn04ky1147x5c048j087rdml86qcp92kzp20679v3"; depends=[LambertW]; }; WordPools = derive2 { name="WordPools"; version="1.1-1"; sha256="081qnsq7wn1vczgf6ipz8wjmyg4vwhj1s5nrzh0dw4p9yz28dxv2"; depends=[]; }; WordR = derive2 { name="WordR"; version="0.3.6"; sha256="096b6msnl1rmikx40j7abb9rhw1vayvf9fjq6i8hrjvv38dbaa1d"; depends=[dplyr flextable officer xml2]; }; - WorldFlora = derive2 { name="WorldFlora"; version="1.13"; sha256="0nfp927ppjzb3934g6rlh47v9jwyvl3id5brnm4qaqczgrs1bvmk"; depends=[]; }; + WorldFlora = derive2 { name="WorldFlora"; version="1.13-2"; sha256="1x2sa6a1zri8c17b88cpwdjk7jyrk8xaish8bi5nlg5m3zkmnh6c"; depends=[]; }; WormTensor = derive2 { name="WormTensor"; version="0.1.0"; sha256="0l55dbcf65cpw03b26va4ssvk3wc0i6hnchb9jyw44369y5xfniy"; depends=[aricode cluster clusterSim clValid cowplot dtwclust factoextra ggplot2 ggrepel rTensor Rtsne usedist uwot]; }; WrensBookshelf = derive2 { name="WrensBookshelf"; version="0.1.0"; sha256="1g83i9qmlidxy55cmvx0sqqrkps9fmvj0sh7jc92v89qwx73pfr0"; depends=[ggplot2]; }; WrightMap = derive2 { name="WrightMap"; version="1.3"; sha256="0c1v8wjqbr9y447h9iz9h2izrm1msdaz3mx1ry47qlcrq6ddlj9v"; depends=[RColorBrewer]; }; @@ -5684,7 +5755,7 @@ in with self; { WtTopsis = derive2 { name="WtTopsis"; version="1.0"; sha256="0zwx75rgdyh7pjxjvd5xvxqkfryvhq2csn4sd0py0dgmjxb5p3ja"; depends=[]; }; WufooR = derive2 { name="WufooR"; version="1.0.1"; sha256="0iq1lc1b22zdvclkr4yivxxf8z5mdxik7lx9r3b38h2qy2rckqb2"; depends=[dplyr httr jsonlite]; }; XBRL = derive2 { name="XBRL"; version="0.99.19.1"; sha256="0mwpk84kp6r7f6fmlby0ka58fj50y592afxzp0wcrzmx65abp7md"; depends=[Rcpp]; }; - XICOR = derive2 { name="XICOR"; version="0.3.3"; sha256="0xhb58bk3r8spd8ah3r7568np27nlrc18cswcsgavaikjpfda9vr"; depends=[psychTools]; }; + XICOR = derive2 { name="XICOR"; version="0.4.1"; sha256="0c9s0sriiasbdanmijgy41gvpwf8hlqy34avalvimyll7y206v1r"; depends=[psychTools]; }; XKCDdata = derive2 { name="XKCDdata"; version="0.1.0"; sha256="1lx9frlbc549qrh4d3m79r3l9icfzqkgfgp8raa8x46a2havi0a5"; depends=[assertthat dplyr glue htmltools httr jsonlite magrittr tibble]; }; XLConnect = derive2 { name="XLConnect"; version="1.0.7"; sha256="0xz65nrp82cxa77bff66hhch1p75a6di29bmbr2lfc9w3hivl7c2"; depends=[rJava]; }; XLS = derive2 { name="XLS"; version="0.1.0"; sha256="0a4jbfz9x9rn4k5v7qh3r9p7pal4piqg01469237lkq00m3lijy5"; depends=[mpoly]; }; @@ -5696,7 +5767,7 @@ in with self; { XRPython = derive2 { name="XRPython"; version="0.8"; sha256="0alg33spiaqf3jwg1qn543nxvbfaqv8gvf5px3grhbgrcmi5mcmj"; depends=[reticulate XR]; }; XRSCC = derive2 { name="XRSCC"; version="0.1"; sha256="0hs2whjsd02avaz79zkrd8gjw9qd7l6ysxmhx4w1r7gb1cj9rr7c"; depends=[]; }; XiMpLe = derive2 { name="XiMpLe"; version="0.11-1"; sha256="1i75c4jp8yklbqhc2wkhpxnv97kz2sdndzdcyrhjvr87wgr7dffh"; depends=[]; }; - Xplortext = derive2 { name="Xplortext"; version="1.5.1"; sha256="1nv13n9hppl5hx6b7gmv629bcn816l861y0b4np9ccwm0yy0zscy"; depends=[FactoMineR flashClust flexclust ggdendro ggforce ggplot2 ggrepel gridExtra MASS slam stringi stringr tm vegan]; }; + Xplortext = derive2 { name="Xplortext"; version="1.5.2"; sha256="149frkkmpxhpcbjdqkjvdlqd6k95hjdydnvgfq4bhi4d8gz2sgzi"; depends=[FactoMineR flashClust flexclust ggdendro ggforce ggplot2 ggrepel gridExtra MASS plotly slam stringi stringr tm vegan]; }; YPBP = derive2 { name="YPBP"; version="0.0.1"; sha256="1slc7glr4hb0my5zkssprngb6si98npjj33nsbsm0nbm61hnb9n8"; depends=[BH Formula MASS Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; YPInterimTesting = derive2 { name="YPInterimTesting"; version="1.0.3"; sha256="0fca963rsbs9k7ivffsqk4hzap6ll7s709kqs6aby0plghrdla2w"; depends=[MASS Rcpp]; }; YPPE = derive2 { name="YPPE"; version="1.0.1"; sha256="01q0l22nwfpld2wcygk5x28c2c6cv35hxy2fm1azn8bqsv7xy5il"; depends=[BH Formula MASS Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; @@ -5712,6 +5783,7 @@ in with self; { ZINARp = derive2 { name="ZINARp"; version="0.1.0"; sha256="1s5nvxcc7nw2kz90i7fqw5fi2qzzbsm5ppn92695v44q38h8jw9s"; depends=[progress]; }; ZIPBayes = derive2 { name="ZIPBayes"; version="1.0.2"; sha256="0j56smgf44fki70jc6aypksbl70pyppc6s3xv82yrq5rndym077k"; depends=[MASS Rcpp]; }; ZIPFA = derive2 { name="ZIPFA"; version="0.8.1"; sha256="134pkdn4slhiv27rdkkmh2z7xch30ns0jhzxgd7r05bky0z1iri1"; depends=[doParallel foreach Matrix optimx trustOptim]; }; + ZIPG = derive2 { name="ZIPG"; version="1.0"; sha256="00dbxywmfkbi7svpnagqy49vfff33j9kychv6x4bpsm9inh8r94a"; depends=[MASS optimr pscl]; }; ZIprop = derive2 { name="ZIprop"; version="0.1.1"; sha256="1gvf6z7mx543a0hiqcknwhkplqa3mfmw3swi8n9vma10bqmgysx7"; depends=[data_table purrr rgenoud]; }; ZRA = derive2 { name="ZRA"; version="0.2"; sha256="1sx1q5yf68hhlb5j1hicpj594rmgajqr25llg7ax416j0m2rnagi"; depends=[dygraphs forecast]; }; ZVCV = derive2 { name="ZVCV"; version="2.1.2"; sha256="0ws0v7i6r7skb8lv6j718k29v5qsy1b007jxidv81iv0jcz9zfpy"; depends=[abind BH dplyr glmnet magrittr mvtnorm Rcpp RcppArmadillo Rlinsolve]; }; @@ -5724,7 +5796,7 @@ in with self; { aMNLFA = derive2 { name="aMNLFA"; version="1.1.2"; sha256="1bks7g6zc8817gr4j1mxzmyhw23mwafb6816a26vylk8d9k9d315"; depends=[devtools dplyr ggplot2 gridExtra MplusAutomation plyr reshape2 stringi stringr]; }; aPCoA = derive2 { name="aPCoA"; version="1.3"; sha256="0ybp7jd1q0md4wbal5cmcl6hg3c1wkdz5mi1w5qddgi472vv1z83"; depends=[ape car cluster randomcoloR vegan]; }; aRpsDCA = derive2 { name="aRpsDCA"; version="1.1.1"; sha256="0ghg43rd6bnv4jp8pkpd1ixp5l6kq5pr0mxq61q24s24g0m3s64p"; depends=[]; }; - aRtsy = derive2 { name="aRtsy"; version="0.2.1"; sha256="0dr3qmw1i9gj1vag247f48k59jr3x0ywn5rlddczhnkpglhdmm1h"; depends=[ambient e1071 ggplot2 kknn randomForest Rcpp RcppArmadillo]; }; + aRtsy = derive2 { name="aRtsy"; version="0.2.3"; sha256="1h5l7774mg03gjvyl4296hqbcwckr5cq469fmibgh16lh812jakq"; depends=[ambient e1071 ggplot2 kknn randomForest Rcpp RcppArmadillo scales]; }; aRxiv = derive2 { name="aRxiv"; version="0.6"; sha256="1smv7aiqdk60aq9lna33a7hdykjdgfakaycpqkjj711b3pixcd34"; depends=[httr XML]; }; aSPC = derive2 { name="aSPC"; version="0.1.2"; sha256="1q301rw7dax5v58srg4jlcam1qq2igkaj7kg8wlnlml0hsck4c4a"; depends=[energy mvtnorm]; }; aSPU = derive2 { name="aSPU"; version="1.50"; sha256="0rh21dj5913nxhdndqfhxvm6mvwnacraf7l3bac09awm7cfhk511"; depends=[fields gee MASS matrixStats mvtnorm]; }; @@ -5747,7 +5819,7 @@ in with self; { abjData = derive2 { name="abjData"; version="1.1.2"; sha256="0q7l9lxm41pjkdv98axx87wcxjxfyccfwi2k1b29g07pfjszs0hv"; depends=[]; }; abjutils = derive2 { name="abjutils"; version="0.3.2"; sha256="0lmf4va8qnzwg698i2h4fcwvd6dhsgdkqsfh41aa3wg1flimhsr7"; depends=[dplyr magrittr purrr rlang rstudioapi stringi stringr tidyr]; }; abmR = derive2 { name="abmR"; version="1.0.8"; sha256="077xinshk9am000ic5m70f4m7094ipqyx9cxyhq0smbpg0h6kn7f"; depends=[geosphere ggplot2 googledrive gstat gtsummary kableExtra purrr raster rgeos rnaturalearth sf sp swfscMisc table1 tmap]; }; - abn = derive2 { name="abn"; version="2.7-3"; sha256="02qmp3ky671fkpjq1vcb083zzvfn5gkf69rhvdlvg7siy5wrjll3"; depends=[doParallel foreach graph lme4 nnet Rcpp RcppArmadillo Rgraphviz rjags]; }; + abn = derive2 { name="abn"; version="2.7-5"; sha256="0ibznjhy7vmh2myarvmxy06rvddbpbarbp201px62mig2pb9aq4y"; depends=[doParallel foreach graph lme4 nnet Rcpp RcppArmadillo Rgraphviz rjags]; }; abnormality = derive2 { name="abnormality"; version="0.1.0"; sha256="1fzfskl9akl06nliy8hkv2a0pznpj8pwcypg3gj5r2nzvr3kan9v"; depends=[MASS Matrix]; }; abodOutlier = derive2 { name="abodOutlier"; version="0.1"; sha256="1pvhgxmh23br84r0fbmv7g53z2427birdja96a67vqgz18r3fdvj"; depends=[cluster]; }; abstr = derive2 { name="abstr"; version="0.4.1"; sha256="0ykds1l7bi0h06fjp0d6xshl8ar05n7ccmjbl7hz02l2v7ncfa6v"; depends=[jsonlite lwgeom magrittr od sf tibble tidyr]; }; @@ -5788,6 +5860,7 @@ in with self; { actilifecounts = derive2 { name="actilifecounts"; version="1.1.1"; sha256="0p65j7l8d8503nil34faz7jashv5rw327xlpphwhwa4x5wga5z01"; depends=[GGIRread gsignal pracma]; }; activAnalyzer = derive2 { name="activAnalyzer"; version="2.0.1"; sha256="0dz6r3z8zcsiiqirr1gd97m53afswf1qg6gya6km605my33xn56b"; depends=[dbplyr dplyr flextable forcats ggplot2 golem hms lubridate magrittr modelr patchwork PhysicalActivity plyr reactable rmarkdown RSQLite shiny shinycssloaders shinydashboard shinydashboardPlus shinyFeedback shinyjs stringr tidyr zoo]; }; activPAL = derive2 { name="activPAL"; version="0.1.3"; sha256="1h6hp5z89ji73gdzxy1dgbfwjysiy5lvcqh90xagpb7sa7ahs3na"; depends=[devtools dplyr ggplot2 lubridate magrittr tidyr]; }; + activatr = derive2 { name="activatr"; version="0.1.1"; sha256="0sk2wwfzms2cf6d4z91mi22vss2jiz8ins4pb9djpgi1mln57iqy"; depends=[dplyr geosphere ggmap glue httr lubridate magrittr rlang slider tibble xml2]; }; activegp = derive2 { name="activegp"; version="1.1.0"; sha256="1yfib5q649kag45ryyqsbq9lq9yd74rrjjk65a6c9rkfa4f6w8xv"; depends=[hetGP lhs MASS numDeriv Rcpp RcppArmadillo RcppProgress]; }; activity = derive2 { name="activity"; version="1.3.3"; sha256="056dnhwc781ykgsmm2jaqxd15bckdxhbvxws6gjcrkvn4yimwgmh"; depends=[pbapply]; }; activityGCMM = derive2 { name="activityGCMM"; version="1.1.1"; sha256="0r11z61h8fs5dcm3yfr2njbrbh4pv7xlbqx5zngmrknhv407498z"; depends=[circular mclust overlap runjags]; }; @@ -5795,11 +5868,11 @@ in with self; { actuaRE = derive2 { name="actuaRE"; version="0.1.5"; sha256="02f90vdbfz6shsw4ndhqbqjsrwiwmi1jp66bsl897cb8fnywnzs4"; depends=[cplm data_table ggplot2 knitr lme4 magrittr nlme statmod]; }; actuar = derive2 { name="actuar"; version="3.3-2"; sha256="0ys7kqqbx9g2mhsn243z9vj7qkdd69d3jy1vin9v8bknwimgdxvb"; depends=[expint]; }; actuaryr = derive2 { name="actuaryr"; version="1.1.1"; sha256="08dzn565ax2l2hrn2m32k6magjbskybywl0hsgkg11nrjvkznwnx"; depends=[crayon dplyr lubridate magrittr purrr tibble]; }; - actxps = derive2 { name="actxps"; version="1.0.0"; sha256="0rpqw3vzs0kn1kgzh1fp8vig2a92pqcy6yanrlr711kaxdjmz5q4"; depends=[dplyr generics ggplot2 glue gt lubridate paletteer purrr readr recipes rlang scales tibble tidyr vctrs]; }; + actxps = derive2 { name="actxps"; version="1.1.0"; sha256="1a02fmi6g0n125g0lszrg83hmlqnlpl3bw8n50c25q1ya4q7dngk"; depends=[dplyr generics ggplot2 glue gt lubridate paletteer purrr readr recipes rlang scales tibble tidyr vctrs]; }; acumos = derive2 { name="acumos"; version="0.4-4"; sha256="15i4xbcdk5vxjrgac32zh4439v0vmabnw3jvsmxiipap5frp7rpi"; depends=[httr jsonlite RestRserve RProtoBuf Rserve yaml]; }; ada = derive2 { name="ada"; version="2.0-5"; sha256="1h3a07czp0w3hrhjcg1fz721y8vsfclzqi3rq8qfzgpfb4h1f06r"; depends=[rpart]; }; adaHuber = derive2 { name="adaHuber"; version="1.1"; sha256="0giypz04m9anssa2r3hlf95lnj74i3ir48p5j898i2z1gmf8m14w"; depends=[Rcpp RcppArmadillo]; }; - adabag = derive2 { name="adabag"; version="4.2"; sha256="109wrl1pwvmyv2l909hrvk7dg4aa9pv449mvdycp50zwrsw9w0a7"; depends=[caret doParallel foreach rpart]; }; + adabag = derive2 { name="adabag"; version="4.3"; sha256="1v4cl50wbv834cpbwkkhaq5wf8s746fp8xkjrwvyw912x6b2zmik"; depends=[caret doParallel foreach rpart]; }; adagio = derive2 { name="adagio"; version="0.8.5"; sha256="0icwr3cark67jyg9zzqwyv9q4fs0j0xgb5i7nkwv9s7y5dlldl0b"; depends=[lpSolve]; }; adamethods = derive2 { name="adamethods"; version="1.2.1"; sha256="150awbd3skb1mqca18bqjykhyycqw8crviw66s6qrcnmcsbk77pj"; depends=[Anthropometry archetypes FNN foreach nnls tolerance univOutl]; }; adana = derive2 { name="adana"; version="1.1.0"; sha256="0zi3a17rapc1z074k3yzgjv2b6ba6c9d54b1hm0ivvgfd335981f"; depends=[optimx ROI ROI_plugin_optimx]; }; @@ -5811,7 +5884,7 @@ in with self; { adaptalint = derive2 { name="adaptalint"; version="0.2.4"; sha256="15qdcvnnbgcps8j5k79354wsc9alswijv8lcafg2i3lghaw536yf"; depends=[dplyr lintr purrr]; }; adaptiveGPCA = derive2 { name="adaptiveGPCA"; version="0.1.3"; sha256="1766b3d9ysa9axfxqwy6gzj0z8hsl34pic6l63nbidqas55vnjqa"; depends=[ape ggplot2 phyloseq shiny]; }; adaptivetau = derive2 { name="adaptivetau"; version="2.2-3"; sha256="1jficl4yidix35q8yqs3pcv813wq3pg4hpw4ah4dprvg95bl7wwx"; depends=[]; }; - adaptr = derive2 { name="adaptr"; version="1.3.0"; sha256="0565j3h64mwak6ihyxprc2jc3a586x3h217fzk28jpix8kwmb19l"; depends=[]; }; + adaptr = derive2 { name="adaptr"; version="1.3.1"; sha256="0aka1rdzggm1yxia4zq9ipb74lah94l16idqscsakxbakk1hxk65"; depends=[]; }; adaptsmoFMRI = derive2 { name="adaptsmoFMRI"; version="1.2"; sha256="00npcl2js9vj5r3l66cp5d2l807klia581pig1gsyjjq4rvmfa7v"; depends=[coda Matrix MCMCpack mvtnorm spatstat spatstat_geom]; }; adc = derive2 { name="adc"; version="1.0.0"; sha256="152j863rfrmjpaambxy6hc57zcpp0wlyd6kl7miryk3z0yvngcw9"; depends=[runner]; }; add2ggplot = derive2 { name="add2ggplot"; version="0.3.0"; sha256="0c94i1cfp2pvplvxmfvvz2fyj026r1jnax05mrzrc7ppnqzy25y0"; depends=[ggplot2 magick magrittr RColorBrewer zeallot]; }; @@ -5820,7 +5893,7 @@ in with self; { addhazard = derive2 { name="addhazard"; version="1.1.0"; sha256="0hk7br52wjmq605xgslv8lspr35aqpdgkiz2yljz31khy3y3vi8c"; depends=[ahaz rootSolve survival]; }; addinsJoaoMelo = derive2 { name="addinsJoaoMelo"; version="0.1.0"; sha256="1slx9vfcpb468asvgcj0vh7djc5rndzdpcp96qmnis77fx67xj5s"; depends=[dplyr purrr rstudioapi stringr]; }; addinsOutline = derive2 { name="addinsOutline"; version="0.1.6"; sha256="125qfqbpv5xflw8qlyh8m3iyd6biyp3arls3z7y8bqkbghifl730"; depends=[dplyr DT fs miniUI rmarkdown rstudioapi shiny shinyFiles stringr tibble yaml]; }; - addinslist = derive2 { name="addinslist"; version="0.4.0"; sha256="0dg91lcb2xgsg6sim9fi9m2p203g2dp5bm5q7k0hy084057c22a5"; depends=[curl DT miniUI rappdirs remotes rmarkdown rvest shiny shinyjs xml2]; }; + addinslist = derive2 { name="addinslist"; version="0.5.0"; sha256="0gis7485m7gz3xz5wfxxm3136cg2j9i6f6zq8gbv206w261y1nfb"; depends=[curl DT miniUI rappdirs remotes rmarkdown rvest shiny shinyjs xml2]; }; additive = derive2 { name="additive"; version="0.0.5"; sha256="1i9837wlz89bl4890735xrb2qi1yaijx8iybr20ky4q9swq3zg7d"; depends=[dplyr mgcv parsnip purrr rlang tibble]; }; additiveDEA = derive2 { name="additiveDEA"; version="1.1"; sha256="15nxpdybsda6yhjk23bpafr8v1zdx8332pcxf26k795q3ypjpiy2"; depends=[Benchmarking lpSolveAPI]; }; additivityTests = derive2 { name="additivityTests"; version="1.1-4.1"; sha256="00kzfv86z6kk0gvbz9mg3p6xi5fb8cn74rhslr17rdpd02md0884"; depends=[]; }; @@ -5830,10 +5903,10 @@ in with self; { adea = derive2 { name="adea"; version="1.3.1"; sha256="0jvxgqwfga4gsn5jcdklfq2qci3xyvmkdfjappjwf72swb2rkv0n"; depends=[Benchmarking combinat knitr lpSolveAPI rmarkdown]; }; adegenet = derive2 { name="adegenet"; version="2.1.10"; sha256="0qxig2jyj1q0a8pwpv5f5v5b4x4af8s9p1p0yc0msmyxq457hqmb"; depends=[ade4 ape boot dplyr ggplot2 igraph MASS reshape2 seqinr shiny vegan]; }; adegraphics = derive2 { name="adegraphics"; version="1.0-18"; sha256="0g2n9n72k8wj4qibd0v68ispgq5kzpkfhbnyk3h1g69yyz07zq4g"; depends=[ade4 KernSmooth lattice latticeExtra RColorBrewer sp]; }; - adehabitatHR = derive2 { name="adehabitatHR"; version="0.4.20"; sha256="06r07cldrdm3d3kig55vvg505j82c0h38cip8rkgaxc29bf32bfx"; depends=[ade4 adehabitatLT adehabitatMA deldir sp]; }; - adehabitatHS = derive2 { name="adehabitatHS"; version="0.3.16"; sha256="1983k2819khkbr50v19n2k0jff9q8bcn1gqv4nmy2z8f24s43mnk"; depends=[ade4 adehabitatHR adehabitatMA sp]; }; - adehabitatLT = derive2 { name="adehabitatLT"; version="0.3.26"; sha256="0208qi802rn8ys00js843ckhg5pw20c55bz8b95kcl538grn9fs0"; depends=[ade4 adehabitatMA CircStats sp]; }; - adehabitatMA = derive2 { name="adehabitatMA"; version="0.3.15"; sha256="1j1idpr0704x3s9dhzxysr3zkm9lp6wnac1jdp98vvbd0l5h7icc"; depends=[sp]; }; + adehabitatHR = derive2 { name="adehabitatHR"; version="0.4.21"; sha256="0ji4a27z5qsi8xpzlx9z8m9hg9k81bb6mkbwzpsinsn1x1dipg0n"; depends=[ade4 adehabitatLT adehabitatMA sp]; }; + adehabitatHS = derive2 { name="adehabitatHS"; version="0.3.17"; sha256="040qbhfrsxjnl75lmc3fmyrvqblfcp0mmagk8sj225069c64k62n"; depends=[ade4 adehabitatHR adehabitatMA sp]; }; + adehabitatLT = derive2 { name="adehabitatLT"; version="0.3.27"; sha256="0siaj9h9gyar6pmnv9bp4k7lcpfcvhykl3jj80pzdb6yyybgj2zx"; depends=[ade4 adehabitatMA CircStats sp]; }; + adehabitatMA = derive2 { name="adehabitatMA"; version="0.3.16"; sha256="1jmmi6rh3rnv5b3qy1xhy0rs4dnkysf4rxjfs0im1i5n4rd437h8"; depends=[sp]; }; adephylo = derive2 { name="adephylo"; version="1.1-13"; sha256="0vd7khqsfnik7j00hac97khv8b1kmi0az5hakg04m8fhx7z3589a"; depends=[ade4 adegenet ape phylobase]; }; adepro = derive2 { name="adepro"; version="3.2.0"; sha256="0sw42yld4bjgfiqm957ply605zsj66mmwvkzi73hsbkk31w1k5fb"; depends=[audio Cairo dplyr gclus haven jsonlite MASS readr rlang seriation shape shiny shinyBS shinyjs shinyWidgets TeachingDemos tidyr V8]; }; adept = derive2 { name="adept"; version="1.2"; sha256="1dpfmfnqzci6p7wqwpp8y0cisx11r8kdsqjm85skb512n35m0i3a"; depends=[dplyr dvmisc magrittr pracma]; }; @@ -5846,17 +5919,17 @@ in with self; { adiv = derive2 { name="adiv"; version="2.2"; sha256="0qmykswwirhas4rrwb4jaqicjkqsmq6k11718hzk65h3xdnpg6kr"; depends=[ade4 adegraphics ape cluster lpSolve phylobase phytools rgl]; }; adjROC = derive2 { name="adjROC"; version="0.3"; sha256="0bf7vvhllpl8irqw1ahfhbhqq67v6jxblapv91ddkgpk2dl0sp03"; depends=[boot ggplot2 ROCit yardstick]; }; adjSURVCI = derive2 { name="adjSURVCI"; version="1.0"; sha256="0nv6m7ds57d0h44d745s0424ssrgn39ihd294dgrzrpmh8gxhq95"; depends=[Rcpp RcppArmadillo survival]; }; - adjclust = derive2 { name="adjclust"; version="0.6.6"; sha256="0kin57r12g1cv4pi6br3c71rpjhfvpkysx7jly3wf0ilj6bfs6vk"; depends=[capushe Matrix Rcpp RcppArmadillo sparseMatrixStats]; }; - adjustedCurves = derive2 { name="adjustedCurves"; version="0.10.0"; sha256="1vcyslv4kwhf2h5l6s60kws7ng9hyxvrvqlbflynkdnhdp4limxj"; depends=[doParallel doRNG dplyr foreach R_utils rlang]; }; + adjclust = derive2 { name="adjclust"; version="0.6.7"; sha256="1pm22249y8pggvm2nnv0rznfh7qhrvbzlbmg4h0dm353b80sxczn"; depends=[capushe dendextend ggplot2 Matrix Rcpp RcppArmadillo rlang sparseMatrixStats]; }; + adjustedCurves = derive2 { name="adjustedCurves"; version="0.10.1"; sha256="01929d6nyyj8l2abr4qk2ycp74m3b1ffzwjl6r32wqb9qkzd8b4i"; depends=[doParallel doRNG dplyr foreach R_utils rlang]; }; adjustedcranlogs = derive2 { name="adjustedcranlogs"; version="0.1.0"; sha256="08apfvpqvnnalx230p4qf5ckrwm1sgzras4zfrysgym5d4map9ci"; depends=[cranlogs dplyr lubridate rvest xml2]; }; adklakedata = derive2 { name="adklakedata"; version="0.6.1"; sha256="1lzj3ib4bgfkq5lq12n47pwc52h7k35xbbwj6brwsgx1gd4fx3x6"; depends=[httr rappdirs]; }; adlift = derive2 { name="adlift"; version="1.4-5"; sha256="0kf1akx5c4c7mdy9ysfdik2xi810jcysw9ynmvxlgw2zykqxvqdk"; depends=[EbayesThresh]; }; - admiral = derive2 { name="admiral"; version="0.10.1"; sha256="0x51m5xqzhpnxy1y69ik5793k82cdwvkcvjv5mc5z1l7al9fxcmp"; depends=[admiraldev dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; + admiral = derive2 { name="admiral"; version="0.10.2"; sha256="1am3ay1s7n4gis10990f09d0dzyshr4rc0v3j1482fi7bd2bj2zk"; depends=[admiraldev dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; admiral_test = derive2 { name="admiral.test"; version="0.5.0"; sha256="1nj0hl7jpyrblypk5gsqz578xqyp4bvxkiw5jyw6jzkvvx15mqk4"; depends=[]; }; admiraldev = derive2 { name="admiraldev"; version="0.3.0"; sha256="0kqwh22yrrj6d4cf9my9wl2nanbkq6cccj3izzlq5459l0qp7242"; depends=[dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; admiralonco = derive2 { name="admiralonco"; version="0.3.0"; sha256="0g8gr7mjqwnypa7zqshlgsqx3l3l3vmbhqjaav5x09xs8al4phfi"; depends=[admiral admiraldev dplyr lifecycle lubridate magrittr rlang tidyselect]; }; admiralophtha = derive2 { name="admiralophtha"; version="0.1.0"; sha256="1bhcgq2fzprg0k7g77kiar1my99spnlar0lzs4r91icbd0ffimm0"; depends=[admiral admiraldev assertthat dplyr hms lifecycle lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; - admisc = derive2 { name="admisc"; version="0.31"; sha256="1splw2brjad3a580nlw73b88snhjw0573a5qyjnj379zr60m0f6v"; depends=[]; }; + admisc = derive2 { name="admisc"; version="0.32"; sha256="1dv5n3hg74wp8nazbxl9mbdkdwpk7z0mibcxfpvdyjgmvfix33nk"; depends=[]; }; admix = derive2 { name="admix"; version="2.1-0"; sha256="0s1zdc3s7mxxpkpy7w28w5ijbh4371lvy87n80dzhd6zww8jgndq"; depends=[fdrtool Iso MASS orthopolynom pracma Rcpp]; }; admixr = derive2 { name="admixr"; version="0.9.1"; sha256="0wszpzs53cbnha13g2ldpq6z5ndw2v2xgrzadqkjm3hsp6akv4bl"; depends=[dplyr magrittr readr rlang stringr tibble]; }; admmDensestSubmatrix = derive2 { name="admmDensestSubmatrix"; version="0.1.0"; sha256="1a5lfm10aj6wdjibdnmffn75zvy6x69w8nqcx2i23gxg6v0xlqcl"; depends=[Rdpack]; }; @@ -5867,12 +5940,12 @@ in with self; { ads = derive2 { name="ads"; version="1.5-9"; sha256="1zipffv20d83aqrxn9fwavn2hf6qix20ffy8l8mgmg2sckfgfb34"; depends=[ade4 spatstat_geom]; }; adsDataHubR = derive2 { name="adsDataHubR"; version="0.1.1"; sha256="19csivbg3f0g2r11l7jrciqq2lhg50km7qv29xfs6ba5cf678hb9"; depends=[httr jsonlite lubridate]; }; adventr = derive2 { name="adventr"; version="0.1.8"; sha256="0nja1a2xhaimz1fg2bb838x9a37sswjqjc68mp59gbdwkfpdii37"; depends=[BayesFactor boot car dplyr effects effsize forcats GGally ggplot2 Hmisc learnr lm_beta nlme readr robust sandwich sjstats tidyr WRS2]; }; - adw = derive2 { name="adw"; version="0.2.1"; sha256="0yynzw4sxz42vqq4dxb0cs123mbir5nnsq45v9agjw889m7k7prj"; depends=[geosphere terra]; }; + adw = derive2 { name="adw"; version="0.3.1"; sha256="00f4z7h4y1gmy9smxy8jwnr4alw641i1lmx4dyjk39jzzrx9fz1d"; depends=[sf terra]; }; adwave = derive2 { name="adwave"; version="1.3"; sha256="11iy50ng0zxvwsvdsvx262j8zgqaai308lp5is47az7xzvk57mx7"; depends=[waveslim]; }; adwordsR = derive2 { name="adwordsR"; version="0.3.1"; sha256="1w5qg4psm8pj89f09pz7in8zkafaimik1n6hx29y55jpmbxbk2gn"; depends=[RCurl rjson]; }; afc = derive2 { name="afc"; version="1.4.0"; sha256="1iy1wa88kf6zi6x7lbd0jdir653cvzvdraliqpxbac413wwb5gwl"; depends=[]; }; afdx = derive2 { name="afdx"; version="1.1.1"; sha256="1654vxakdd11b5zhwy1vcv127xk5rifan6fs1k6w1qsk74j4drqv"; depends=[dplyr magrittr maxLik tidyr]; }; - afex = derive2 { name="afex"; version="1.2-1"; sha256="1jxahp2nq2clmi7wqi0n0b23xyvsjckvz9bmj81j35fv8v6wxa73"; depends=[car lme4 lmerTest pbkrtest reshape2]; }; + afex = derive2 { name="afex"; version="1.3-0"; sha256="0cqr3vv4aapg8ckhrkwqhs5qvzl8zla147fvhd5wb2020yhpdqpq"; depends=[car lme4 lmerTest pbkrtest reshape2]; }; affinity = derive2 { name="affinity"; version="0.2.5"; sha256="0nfh3g8nifv5773pihgzxh62wa837i2dk1kgf15z28cb5xfj2y8h"; depends=[raster reproj]; }; affinitymatrix = derive2 { name="affinitymatrix"; version="0.1.0"; sha256="10i7wzl4xiphj5f466ga7c4ha3mkyqn63x1z0jyx50m0b84sggq1"; depends=[expm ggplot2 ggrepel Hmisc MASS]; }; affluenceIndex = derive2 { name="affluenceIndex"; version="2.1"; sha256="0vcg4gphs0yxdxsgw7kj9r3hvjpfs2z8sjvllvfw9ki3y7jy5jb8"; depends=[spatstat spatstat_geom]; }; @@ -5881,12 +5954,14 @@ in with self; { africamonitor = derive2 { name="africamonitor"; version="0.2.3"; sha256="13pwrbz0ap13a4di3zc1z5j4jk4q9vcpn4g8n41nyminbsg1vl5j"; depends=[collapse data_table DBI RMySQL]; }; aftgee = derive2 { name="aftgee"; version="1.1.6"; sha256="1sq6d6zkr4whg61phz22gb5zh7wxg2il39w2g5s812i4hiipqj4r"; depends=[BB geepack MASS survival]; }; afthd = derive2 { name="afthd"; version="1.1.0"; sha256="0gg2cp3sj28f3pi5rqh737hna3imwarwas01jacm0m2h27587k7y"; depends=[glmnet photobiology R2jags rstpm2 survival]; }; - afttest = derive2 { name="afttest"; version="4.2.1.1"; sha256="06l11gjfv2a4jsdi7f88w7pk04a2mfl2jx969z7w4n4nlmz0bz8z"; depends=[aftgee ggplot2 gridExtra Rcpp RcppArmadillo survival]; }; + afttest = derive2 { name="afttest"; version="4.2.3"; sha256="0hmjn1cnyhpzpmy1kn920illzk7iz0h4kqa61xxdqbj51hznrhnf"; depends=[aftgee ggplot2 gridExtra Rcpp RcppArmadillo survival]; }; ag5Tools = derive2 { name="ag5Tools"; version="0.0.1"; sha256="1390acslndzvvhdc6pk9cfvhval1wqgiic353f03qv0rvhxbyzad"; depends=[fs reticulate terra]; }; agRee = derive2 { name="agRee"; version="0.5-3"; sha256="1wi8jn14kpsj5z49my6fz8j6zxysddxm8svw86cnzsmnbj6mzq7x"; depends=[coda lme4 miscF R2jags]; }; ageg = derive2 { name="ageg"; version="1.0.0"; sha256="0dcmwgznxf1jjsifpm3nn3jk25mm27l6f6f6jfi2n3crxgqfizyv"; depends=[]; }; + agena_ai = derive2 { name="agena.ai"; version="1.0.0"; sha256="0wdn4iw2b2zq8zfrmjkqik8w8ydi3r45fwwq4ansjmjqh1j99gjf"; depends=[httr openxlsx Rgraphviz rjson]; }; ageutils = derive2 { name="ageutils"; version="0.0.1"; sha256="1li9vd1qq2pf1prxxlqb3a8ff2rjr7796j3bhqj3s2qp6g09395a"; depends=[]; }; aggTrees = derive2 { name="aggTrees"; version="2.0.0"; sha256="1cc7k23cb1cav2q4hs9i3ra4gs96vm08192p4nq1lsji28v6h7f6"; depends=[car caret estimatr grf rpart rpart_plot stringr]; }; + agghoo = derive2 { name="agghoo"; version="0.1-0"; sha256="0vaqmydww494ql6xbhhjkpap3lqkhf8hkbcrr1pk81qpszs0pndm"; depends=[class FNN R6 rpart]; }; aggregation = derive2 { name="aggregation"; version="1.0.1"; sha256="0j9g604m2ccc7hcy02539yja9cf3xcbl25gvp838bp4x8w18my46"; depends=[]; }; aghq = derive2 { name="aghq"; version="0.4.0"; sha256="12zzadx0qfh5wg8092w777c9ymd1m6gq3gwmfp9pf9bn3s31vij3"; depends=[Matrix mvQuad numDeriv polynom rlang]; }; aglm = derive2 { name="aglm"; version="0.4.0"; sha256="0rcyrzfi3l1k53c9qs1gfrcflnhdnri9sq6py8s6fw4wcn55kf67"; depends=[assertthat glmnet mathjaxr]; }; @@ -5899,7 +5974,6 @@ in with self; { agriutilities = derive2 { name="agriutilities"; version="1.1.0"; sha256="1ynd3cy9ak6ns8vzknz790q4pz63gbj4v9992p3igihw56vx9znn"; depends=[data_table dplyr emmeans ggplot2 ggpubr ggrepel lme4 lmerTest magrittr Matrix psych rlang SpATS statgenSTA tibble tidyr]; }; agriwater = derive2 { name="agriwater"; version="1.0.1"; sha256="1mssd0nxj8ayc3b2qcc7qzx93cnwnlxrnhn3rdknxc8iixkf40l8"; depends=[raster rgdal sp]; }; agrmt = derive2 { name="agrmt"; version="1.42.8"; sha256="1czxcyqrmcpjh4h77p9c6gb63aj0mi1b8cdxp3q6r0k7dy8db7ad"; depends=[]; }; - agroclim = derive2 { name="agroclim"; version="0.3.0"; sha256="06mv18a73dpcdw2y2df83rx9kfxsd5x2zv6j5md3yzm9ij3rylvx"; depends=[abind cowplot easyNCDF ggforce ggplot2 ggpubr gtable multiApply ncdf4 raster reshape sp zoo]; }; agrostab = derive2 { name="agrostab"; version="0.1.0"; sha256="0mcskv3144j594wqljzn5pwbhkxh6sb76b1c2wabzjvi61zrapiv"; depends=[dplyr ggplot2 rlang]; }; ags = derive2 { name="ags"; version="1.0.1"; sha256="1g2q5cbpa0iwkwhcng15vqn8jgx5lingjfwakj320jr76x9bx6my"; depends=[dplyr rlang stringr]; }; agtboost = derive2 { name="agtboost"; version="0.9.3"; sha256="1z2ys4cn859vas3q1if50k46cryn7wwy1pjqbc8n9dhdn5zxn3sk"; depends=[Rcpp RcppEigen]; }; @@ -5919,7 +5993,7 @@ in with self; { aihuman = derive2 { name="aihuman"; version="0.1.0"; sha256="0isd6j3qfhl9dfcknzsfyipvvni7bw6cpdkk4v5azpi3mcixbq4n"; depends=[abind coda doParallel dplyr foreach ggplot2 lme4 magrittr MASS metR purrr Rcpp RcppArmadillo RcppEigen tidyr]; }; aimPlot = derive2 { name="aimPlot"; version="1.0.0"; sha256="1d52b7kccxba6j7n0gbd7pzs0p87zn32vv8gdf2f7lyr75qzgz7x"; depends=[ggplot2]; }; aimsir17 = derive2 { name="aimsir17"; version="0.0.2"; sha256="0v804maqaygqhw3y9wqap3h9vvjniqnnbsv1psjj500r2yscicxs"; depends=[tibble]; }; - airGR = derive2 { name="airGR"; version="1.7.0"; sha256="0miqkhapw3ch4wss8dkygf5j5rj9jwdm7xdb4c5jfdnxdbbsxwjs"; depends=[]; }; + airGR = derive2 { name="airGR"; version="1.7.4"; sha256="1klf064lm6iyvlmy89amf097yvcyqsz9m2h6mjxqv6n737bvlzfa"; depends=[]; }; airGRdatasets = derive2 { name="airGRdatasets"; version="0.1.4"; sha256="1gz7irz0kzdni0dksi4qa0xa6n018l31xjdh4w1r40v38g4c6hai"; depends=[]; }; airGRdatassim = derive2 { name="airGRdatassim"; version="0.1.3"; sha256="05c108rcj4rlzrbabai95abxhyjsrrrsgvds4zamvyzpjl64f9ps"; depends=[airGR]; }; airGRiwrm = derive2 { name="airGRiwrm"; version="0.6.1"; sha256="1dr7xg8a6xfdihmf4x03wm268iz78lks15fx9hmpw6sp15xv5kdj"; depends=[airGR DiagrammeR dplyr]; }; @@ -5950,17 +6024,19 @@ in with self; { algorithmia = derive2 { name="algorithmia"; version="0.3.0"; sha256="1ccmcsyxncyv8k0fjvr5y44amygqi7qx2dy6rsy3a5pw281hllr4"; depends=[base64enc httr rjson]; }; aliases2entrez = derive2 { name="aliases2entrez"; version="0.1.2"; sha256="11myzwvmagnj35qrrxr35hklzv76c0c4h2zl64y3lzzn5rfii0n6"; depends=[AnnotationDbi doParallel foreach limma org_Hs_eg_db RCurl readr]; }; align = derive2 { name="align"; version="0.1.0"; sha256="1r411yvsgzfywamsjz3j5pim0qjfa7rmhdkhd3sj8lp1xh98jhy9"; depends=[matlab]; }; - alkahest = derive2 { name="alkahest"; version="1.0.0"; sha256="1m9lp12vvlzpsscig1c5y07m7wkj0v8jj9f3bzhb9sp1ii4nyysh"; depends=[]; }; + alkahest = derive2 { name="alkahest"; version="1.1.0"; sha256="0rajjszil8b8lira6x3jd8ccizb16s6qh98cynjqdfq9z70xi5g2"; depends=[]; }; + allMT = derive2 { name="allMT"; version="0.1.0"; sha256="0d34w0gl369mq512x3h2nsrvd13ahy36p5hdyvz5gnpdlaql64c6"; depends=[dplyr ggplot2 htmlTable plyr readxl reshape2 rio scales stringr survival survminer tibble]; }; allcontributors = derive2 { name="allcontributors"; version="0.1.0"; sha256="1lvm6r4k4z4v2pl1nb6v2ql1cakyi48b3vp4zdf0p5rvmv7sndz6"; depends=[cli clipr curl ghql git2r gitcreds httr jsonlite magrittr]; }; alleHap = derive2 { name="alleHap"; version="0.9.9"; sha256="1fqrw645s3f5363p7jl3dzy8xphxdr1v6wdsjmqcqwpgvjqfr2zz"; depends=[abind]; }; - allelematch = derive2 { name="allelematch"; version="2.5.1"; sha256="00117cj01psax4rjvy2nja5r2ss9l8zzjicczh46kp401i1ghmwc"; depends=[dynamicTreeCut]; }; + allelematch = derive2 { name="allelematch"; version="2.5.2"; sha256="15dkafz3gzrnwi3kmd4abyx4i29bm4lhy99lix2n2rjy123wc8fb"; depends=[dynamicTreeCut]; }; allestimates = derive2 { name="allestimates"; version="0.2.3"; sha256="1gjkry5v1mrb11zd3r9z9cj6aasrhj29yihpizqphbb463qima3a"; depends=[broom dplyr ggplot2 stringr survival tidyr]; }; allomr = derive2 { name="allomr"; version="0.2.0"; sha256="1w0b32ks8mi2n1md91bikz1qca1cck5rjc5j2yf22s69dd9rnhqv"; depends=[]; }; alluvial = derive2 { name="alluvial"; version="0.1-2"; sha256="039frwrsxq1lb97s7vf2vbyyadimkigs628ymym06fxka53drdkp"; depends=[]; }; - almanac = derive2 { name="almanac"; version="0.1.1"; sha256="0qsczk74ihy7ac5c4dzd6ax5gfmr56wfnjxg396qc2c3xykb7dd5"; depends=[glue lubridate magrittr R6 rlang V8 vctrs]; }; - alone = derive2 { name="alone"; version="0.1.1"; sha256="0z5rxq7f8ms3gmamd4qf538ymdmf76ipcrh5xm8aw0vhipxp8vg5"; depends=[]; }; + almanac = derive2 { name="almanac"; version="1.0.0"; sha256="03954ylzqj34kkkz74ffa3i1kbby2vy0gxmbqd4gcw6qa646fq79"; depends=[cli glue lifecycle lubridate magrittr R6 rlang V8 vctrs]; }; + alone = derive2 { name="alone"; version="0.2"; sha256="1qc3dbpyyc37x5ad2rrn3v5a39f00a0kmkm7xphc0w742zsl5p9y"; depends=[]; }; alookr = derive2 { name="alookr"; version="0.3.7"; sha256="0sdwphzxjh8y4gi3pnsdddra0x085h30m520j8im25z1bhxp0sq7"; depends=[caTools cli dlookr dplyr future ggmosaic ggplot2 glmnet MASS MLmetrics parallelly party purrr randomForest ranger rlang ROCR rpart tibble tidyr tidyselect xgboost]; }; alpaca = derive2 { name="alpaca"; version="0.3.4"; sha256="1fqw8fcahpgdkj25pd6pq4isd0yrdpiypl3q9ir79a56pvjcn8a4"; depends=[data_table Formula MASS Rcpp RcppArmadillo]; }; + alpha_correction_bh = derive2 { name="alpha.correction.bh"; version="0.0.1"; sha256="1rwz90hlbiday3s9c90v13s7mprxmmibgk08jkvxfc5axgy8qgqs"; depends=[knitr]; }; alphaN = derive2 { name="alphaN"; version="0.1.0"; sha256="0asm0r1cqbqan0d5dbb7jffqgrcai2kcpw1l2p9s4qxfff9vliva"; depends=[]; }; alphaOutlier = derive2 { name="alphaOutlier"; version="1.2.0"; sha256="09yrbv7jsiymw5gzp8p92ki70v1fys2k75x4sb9s7wy3c58wn1cd"; depends=[nleqslv quantreg Rsolnp]; }; alphabetr = derive2 { name="alphabetr"; version="0.2.2"; sha256="1pmp6zwhgycb38y5jbvrbv2nza7gyjh508vy09ml483c2cysvc1r"; depends=[clue dplyr multicool Rcpp]; }; @@ -5974,14 +6050,14 @@ in with self; { altR2 = derive2 { name="altR2"; version="1.0.0"; sha256="15nvbq3n76p2857ipyf3q6rs2mwjqsp9gr3rmzbjfm8lrj0faxsv"; depends=[gsl purrr]; }; altadata = derive2 { name="altadata"; version="0.1.1"; sha256="0wv8a0423k0gw5i0qgz5d3wqw22a9pk7r80fp33pn0mxq9b54zdv"; depends=[httr jsonlite]; }; altair = derive2 { name="altair"; version="4.2.2"; sha256="0ckdfgrng3868qm9cspggd5xjbpmkq01q7ylnsiah6v72kzcn1fc"; depends=[assertthat htmlwidgets magrittr repr reticulate vegawidget]; }; - altdoc = derive2 { name="altdoc"; version="0.1.0"; sha256="0336p5yc2imr7r7qi1kzl4psy59m8k6c7j4db345n8i61z3dm0ll"; depends=[cli commonmark desc fs here htmltools jsonlite rmarkdown rstudioapi servr usethis xml2 xslt yaml]; }; + altdoc = derive2 { name="altdoc"; version="0.2.0"; sha256="1sxyh8avi2hand02p7rhg78hjgbfhz1nkqsgbgvr3pwxgmqz9c7s"; depends=[cli desc fs here htmltools rmarkdown rstudioapi servr tinkr usethis xml2 yaml]; }; altfuelr = derive2 { name="altfuelr"; version="0.1.0"; sha256="0k3f4wr9gbn5aig40xg817hrnz2lx8g4adyy18s59fs8dw03v87h"; depends=[dplyr httr jsonlite lubridate magrittr purrr stringr]; }; altmeta = derive2 { name="altmeta"; version="4.1"; sha256="01v308389wqzp35icrp9ssb4y4gxwjzl600qw47c6rmm6s2mxzjh"; depends=[coda lme4 Matrix metafor rjags]; }; amanida = derive2 { name="amanida"; version="0.2.3"; sha256="0vi1x43s9xbr6ggx6km342qfqn2yppinsgn50gm73vckvb8672gs"; depends=[dplyr ggplot2 ggrepel kableExtra knitr magrittr readr readxl rmarkdown tibble tidyr tidyverse webchem]; }; amanpg = derive2 { name="amanpg"; version="0.3.4"; sha256="19lmf844n2nz8n52lsmabi36bibdd3cc5ry8n1x0aksgspszjb40"; depends=[]; }; amap = derive2 { name="amap"; version="0.8-19"; sha256="000r5705lq2mc15skin07dfxjf5816nbfy4gqkya1sv99dlfljbk"; depends=[]; }; amapGeocode = derive2 { name="amapGeocode"; version="0.6.0"; sha256="0j04hg2ks7578fiaymj295yll77xm6x5svmxx6m4n0djky8j10n1"; depends=[data_table furrr httr jsonlite magrittr sjmisc xml2]; }; - amapro = derive2 { name="amapro"; version="0.1.1"; sha256="11g5gfd3f019gdvxljib293a87l6316igj9cq68vxv6xvx4j2cvw"; depends=[htmlwidgets shiny]; }; + amapro = derive2 { name="amapro"; version="0.1.3"; sha256="1cq65kcsr2yxhrnm98n4fzaj6xljjln92kkn96d758n2lk65lwlg"; depends=[htmlwidgets]; }; amazonadsR = derive2 { name="amazonadsR"; version="0.1.0"; sha256="1z4c58swpm6y5h4vlxil5ic9larhnn7xkzd9sgggni4878yk0rng"; depends=[jsonlite]; }; amazons3R = derive2 { name="amazons3R"; version="0.1.0"; sha256="1h39cm0vyrr299wfpq9p1dpbgrjhkr28wm2q23lq8627i4b8bn5m"; depends=[jsonlite]; }; amazonspR = derive2 { name="amazonspR"; version="0.1.0"; sha256="0il66gb43zm6shr870yqlfn6l1srl37pdxpq3pdkil8g20nf92rn"; depends=[jsonlite]; }; @@ -5993,13 +6069,15 @@ in with self; { amerifluxr = derive2 { name="amerifluxr"; version="1.0.0"; sha256="099vv1axgp4jfi9ic4rqsdcv8a5dz1z0zdmdx8r8h474p3jdqm7c"; depends=[heatmaply httr jsonlite memoise RCurl readxl]; }; amerika = derive2 { name="amerika"; version="0.1.0"; sha256="1c0bi0wrc89d0zv0wzmdvka66mcikgi1w4gn1i22mvg5bivhzaqx"; depends=[]; }; ammiBayes = derive2 { name="ammiBayes"; version="1.0-1"; sha256="1m60pg84nhrlhj3kgja766xms2i9dkx0r5vggskfx82mynnlhj9y"; depends=[bayesplot coda distfree_cr Hmisc lattice latticeExtra movMF msm spam]; }; + ammistability = derive2 { name="ammistability"; version="0.1.4"; sha256="06hlbpwa0d1grs7k1vfhchrfi9zml76hkn41vnrayv35fx0sl1pz"; depends=[agricolae ggcorrplot ggplot2 mathjaxr Rdpack reshape2]; }; amp = derive2 { name="amp"; version="1.0.0"; sha256="11132s3bdjcldvpws7yc1w4nifvq0iaavdda2zj0wwmi4rw5xx5c"; depends=[dplyr ggplot2 glmnet MASS rlang SuperLearner tidyr]; }; ampd = derive2 { name="ampd"; version="0.2"; sha256="0bi8qngd37n60ym516yjcahxc536vdwm60rq5ld32170hww69j7c"; depends=[]; }; ampir = derive2 { name="ampir"; version="1.1.0"; sha256="0nnsxrnq3m1frrjp3i8bhm67x6xnl0scyb67wxgm5x7b187svhfj"; depends=[caret kernlab Peptides Rcpp]; }; amt = derive2 { name="amt"; version="0.2.1.0"; sha256="0dw29gpgcqm5v8scwhnvdk1vkq9wqjd9klrxlgigqisnlqg0pgia"; depends=[checkmate circular ctmm data_table dplyr fitdistrplus FNN KernSmooth lubridate MASS purrr Rdpack rlang sf sfheaders survival terra tibble tidyr]; }; - anMC = derive2 { name="anMC"; version="0.2.3"; sha256="01j3zbx5ihi1jlbffib7wpv7908lrjgkq8al1mkhh1qrihsj77qb"; depends=[mvtnorm Rcpp RcppArmadillo]; }; + anMC = derive2 { name="anMC"; version="0.2.4"; sha256="03yzyhqfc7g4aqn19iv3pc9413iz4jlh460p17dlbqwzzmici45p"; depends=[mvtnorm Rcpp RcppArmadillo]; }; + anabel = derive2 { name="anabel"; version="3.0.1"; sha256="0m6jkbl3mf3kpaq9yj0qrbwcvgd1qrdakc14xcnd8awgvbqh6z01"; depends=[cli dplyr ggplot2 kableExtra minpack_lm openxlsx progress purrr qpdf reshape2 rlang tidyr]; }; anacor = derive2 { name="anacor"; version="1.1-4"; sha256="0wf9kb8389gc9jy32dr8ap78lychgjnd19jix7wzln4yx78ypqnq"; depends=[car colorspace fda]; }; - analogsea = derive2 { name="analogsea"; version="1.0.6"; sha256="1bcykcsciv4s7071iw3a9sxpd3jslv1sg93mxzyhxy4y2pikg7q0"; depends=[httr jsonlite magrittr yaml]; }; + analogsea = derive2 { name="analogsea"; version="1.0.7.2"; sha256="146n6z06nr3jyni8mg8gjb7r4w06mrpkfmpg8l8z6rw9aw1gh73p"; depends=[httr jsonlite magrittr yaml]; }; analogue = derive2 { name="analogue"; version="0.17-6"; sha256="0c5h8nnbflydv35ja1pfhyx7ifwlriwgcnrmxj5il5lvcr70y1vi"; depends=[brglm lattice MASS mgcv princurve vegan]; }; analyzer = derive2 { name="analyzer"; version="1.0.1"; sha256="1729dnghdca7dr4l5cxazg68ipkm63mvk2danwm3bva62sza29p6"; depends=[dplyr ggplot2 gridExtra]; }; anapuce = derive2 { name="anapuce"; version="2.3"; sha256="05k3ypy4dc8q4jv0by37k66pdwb1wmsd24i6nciris5knfdy9csg"; depends=[]; }; @@ -6016,23 +6094,24 @@ in with self; { animate = derive2 { name="animate"; version="0.3.9.4"; sha256="1pzgxz3xdp7c1swd5sxzlpyvvqv3shw8dxnbjwv1cr5g406p8970"; depends=[base64enc glue httpuv jsonlite R_utils R6]; }; animation = derive2 { name="animation"; version="2.7"; sha256="0sg4sz5lkn85yzpcg22xkr7921cbnh7g74nlp9imjy7c0hdqyhc8"; depends=[magick]; }; animint2 = derive2 { name="animint2"; version="2023.3.14"; sha256="1x1aj1j1nqiwa8rq28qi8yppd8d6jmbzxyz9fzxlxbfkh1ds5kz8"; depends=[data_table digest gtable knitr MASS plyr reshape2 RJSONIO scales]; }; - animl = derive2 { name="animl"; version="1.0.0"; sha256="0rc82y5z1jkd9bfq2dnn50sr2lf6vhs7yyn1fwfn13krczc9zcbp"; depends=[av data_table dplyr exifr imager jpeg keras pbapply reticulate tfdatasets]; }; + animl = derive2 { name="animl"; version="1.1.0"; sha256="1r6vy8kc98av2xwxas59gzqiynaxvddc5dxdkbvfd5v9zsglqr0y"; depends=[av dplyr exifr imager jpeg keras magrittr pbapply reticulate tensorflow tfdatasets]; }; anipaths = derive2 { name="anipaths"; version="0.10.2"; sha256="1fip68xj7zlznxsdjvwyh959nhryp0ikym3ng9ji8gz6d7yb0jyq"; depends=[animation crawl dplyr ellipse ggmap ggplot2 igraph lubridate magrittr mgcv mvtnorm raster RColorBrewer scales sf sp stringr tidyr tidyselect]; }; aniview = derive2 { name="aniview"; version="0.1.0"; sha256="1klakkmdk4xllaxd0pllvxi4396n6rz2idz55niy91mp0fhcjhwf"; depends=[htmltools jsonlite]; }; anndata = derive2 { name="anndata"; version="0.7.5.6"; sha256="1q1ii43wfj68qdlzhqj9msxqsfzpidhhlfrisax4p943v7yh75mi"; depends=[assertthat Matrix R6 reticulate]; }; + annmatrix = derive2 { name="annmatrix"; version="0.1.2"; sha256="0ljlxiyprvaa84skw5g2qfjf55fkdcsygvb09i5jws9dm0i8h80w"; depends=[]; }; annotater = derive2 { name="annotater"; version="0.2.2"; sha256="1yzsamy4zrr7v0kjnc3x034a7ffw1zj7cc5dx11pcwyhk88yba7z"; depends=[dplyr purrr readr rlang rstudioapi stringi stringr tibble tidyr]; }; annotator = derive2 { name="annotator"; version="0.0.3"; sha256="0d0lkizdafinyqjg7xzgn375b6m8gfkhsdf6c73hm9r8h2kik2sq"; depends=[htmlwidgets shiny xfun]; }; anocva = derive2 { name="anocva"; version="0.1.1"; sha256="1byg40jla71k1901js5h9yq89j63d00vkm60id1fxlpv95c4wdrr"; depends=[cluster]; }; anomaly = derive2 { name="anomaly"; version="4.0.2"; sha256="110rdzz6l80vjc0q0gb0f829vb70r97p19ywa7gbl2cbkj2s1cci"; depends=[assertive BH caTools cowplot dplyr ggplot2 magrittr Rcpp Rdpack reshape2 rlang robust robustbase runner xts zoo]; }; anovir = derive2 { name="anovir"; version="0.1.0"; sha256="1x7lvj7xchbv6siyc9miivmf0rlxrjflal4icyvbxgdr285s2s9w"; depends=[bbmle]; }; anscombiser = derive2 { name="anscombiser"; version="1.1.0"; sha256="1hakvxgc50zshi5kplg90r0499mihhwvhhz7bshndjxxci1ashkl"; depends=[]; }; - antaresEditObject = derive2 { name="antaresEditObject"; version="0.5.0"; sha256="01xm7khz46xhq4klf2xismxldlinkarzj3kfkxj3dwjnfkf0jx9s"; depends=[antaresRead assertthat cli data_table doFuture doParallel future httr jsonlite memuse pbapply plyr progressr whisker yaml]; }; + antaresEditObject = derive2 { name="antaresEditObject"; version="0.5.1"; sha256="05zawrma7li2pqlsvs1y866a3l7qrpkb2mb0n9l883lfb4gw9q8q"; depends=[antaresRead assertthat cli data_table doFuture doParallel future httr jsonlite memuse pbapply plyr progressr whisker yaml]; }; antaresProcessing = derive2 { name="antaresProcessing"; version="0.18.1"; sha256="1dlq850xqh9534ws88ma3vv5r79cbabn6r6a2jmicxx116s7wjrz"; depends=[antaresRead data_table]; }; - antaresRead = derive2 { name="antaresRead"; version="2.5.0"; sha256="1y5zzyxmyxrjchdm9wgxnqzfjrfjdim66qjd5465dq60h43svvd7"; depends=[bit64 data_table doParallel httr jsonlite lubridate memuse pbapply plyr purrr shiny stringi stringr]; }; + antaresRead = derive2 { name="antaresRead"; version="2.5.1"; sha256="16chh3n62m0dw0w25wrn68l1gn03vhhsz7k2vgwgjcyzbbllg2x2"; depends=[bit64 data_table doParallel httr jsonlite lubridate memuse pbapply plyr purrr shiny stringi stringr]; }; antaresViz = derive2 { name="antaresViz"; version="0.17.1"; sha256="072nh0x0qrbi9va27r20vjzjsbjriqbzbpwc7vl40pimjd0hd2x4"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts raster rgeos shiny sp spMaps webshot]; }; anthro = derive2 { name="anthro"; version="1.0.0"; sha256="169h2vhdd2kxh4228lx1ab3fipixvka4686ngx6h8g15li9828s9"; depends=[survey]; }; anthroplus = derive2 { name="anthroplus"; version="0.9.0"; sha256="1wnj2idgdnh2gdw34x40adijf2sxp3k72j45pqqxg4aqc1wrvvv1"; depends=[anthro]; }; - anticlust = derive2 { name="anticlust"; version="0.6.3"; sha256="0014bp4j1nl5m3v20yjxpqjbya22rsfj9xagswy2bqpyqjycvds2"; depends=[Matrix RANN]; }; + anticlust = derive2 { name="anticlust"; version="0.6.4"; sha256="19v048455qklj136vgmdjqvsmprkkr6gwwr5c926xalzsrdcxl64"; depends=[Matrix RANN]; }; antitrust = derive2 { name="antitrust"; version="0.99.26"; sha256="172y87vnifxbs4n06v3qvwlxnl3fxhfp9cp1qzm4agcvqh1j7rxz"; depends=[BB numDeriv]; }; antiword = derive2 { name="antiword"; version="1.3.1"; sha256="123v8zlczwh6fr1v3x7dl3885xlmddq1bqlcxih8zh07w0hlk1k2"; depends=[sys]; }; anyLib = derive2 { name="anyLib"; version="1.0.5"; sha256="1x9x58hhkkwdskmgdjv94ynh811n9w0752hh4214adl1qpn576vm"; depends=[BiocManager curl devtools httr withr]; }; @@ -6043,14 +6122,14 @@ in with self; { aod = derive2 { name="aod"; version="1.3.2"; sha256="0p2i536s0aa54rah1l465g77k2ldn6jm6s25y9vc06mk29xvx1cv"; depends=[]; }; aods3 = derive2 { name="aods3"; version="0.4-1.2"; sha256="0rd4xr7nwac49m8h4pr8hv79giyv2rrlnz78r7mxa6lpgkmgqp4d"; depends=[]; }; aoos = derive2 { name="aoos"; version="0.5.0"; sha256="0y92vs27i0mkpjdclqzq4j9g1axkymhi3v8xp1v6hazh35yzjkfj"; depends=[magrittr roxygen2]; }; - aopdata = derive2 { name="aopdata"; version="1.0.1"; sha256="11d9aipqcasrpi0fl2qnnqmg4wlsj3y9vy9cym4ka9jn2x1xxjns"; depends=[checkmate curl data_table httr sf]; }; + aopdata = derive2 { name="aopdata"; version="1.0.2"; sha256="0vjx3zzfr4si09g6f3vk6yl5p4nr5x147ng2578mpa2kwf47yad8"; depends=[checkmate curl data_table httr sf]; }; aoristic = derive2 { name="aoristic"; version="1.1.1"; sha256="1zanf21qmnjmwzzccpdm1bwnyhv9zqjirrylfwmbpkzlmvp0a4pb"; depends=[dplyr ggplot2 lubridate openxlsx plyr scales tidyr]; }; aorsf = derive2 { name="aorsf"; version="0.0.7"; sha256="1shx7i6qf0w9w2ir5p7mdjh1kva2xqxm6qm9blqwp7s418ykvk6b"; depends=[collapse data_table Rcpp RcppArmadillo]; }; aos = derive2 { name="aos"; version="0.1.0"; sha256="0nkl7dkqjfp4ahwmn3vs0akx6x2brf0m5gzzzx6pf54j1qwypbhf"; depends=[htmltools jsonlite]; }; apTreeshape = derive2 { name="apTreeshape"; version="1.5-0.1"; sha256="1wxhfp21ir9yv4wnbh7ay2x05k822nsyd5smlxmk67wm5w4vr1v1"; depends=[ape coda cubature pbapply quantreg]; }; apa = derive2 { name="apa"; version="0.3.3"; sha256="1nvhl5fqramsdrkpl1nmgr1vmki5c1lkdi1kkx7ihf0cz35f7c2a"; depends=[dplyr magrittr MBESS purrr rmarkdown stringr tibble]; }; apaTables = derive2 { name="apaTables"; version="2.0.8"; sha256="0jy6x0z9ivqqkjihqhyg3fxyghqa9gs6q2bpxzjdnbcb3kq151vd"; depends=[boot broom car dplyr MBESS tibble]; }; - apaText = derive2 { name="apaText"; version="0.1.1"; sha256="1r217k60w027i63nbj24b1rm37m4qf7a6iirc941s945babkxcmb"; depends=[dplyr]; }; + apaText = derive2 { name="apaText"; version="0.1.7"; sha256="1y3kwm6kldryqw9jb2dikvijmqxwxpkp4pw64c9pqshxjjnwfqiq"; depends=[cocor dplyr]; }; apache_sedona = derive2 { name="apache.sedona"; version="1.4.0"; sha256="0lz4rgqfhpq1n70yh0ag1xw0n8bq0lw2wakb4aszv2z3dkqlzr5h"; depends=[cli dbplyr lifecycle rlang sparklyr]; }; apc = derive2 { name="apc"; version="2.0.0"; sha256="0vh6iyxm46k8sfa1xgz0y6m619snnm8s072kml5qgiiw5s7bqnpq"; depends=[AER car ChainLadder ggplot2 ISLR lattice lmtest plm plyr reshape survey]; }; apcf = derive2 { name="apcf"; version="0.3.0"; sha256="194w409gz052a8gcsdn3v68sqjcwrhb1ck712nljd0iy1mgdz6cs"; depends=[Rcpp wk]; }; @@ -6068,8 +6147,9 @@ in with self; { aplot = derive2 { name="aplot"; version="0.1.10"; sha256="1lb739r3d60a73km8w5f76p7v6xydkfljfxvi25n51zq8617cdyr"; depends=[ggfun ggplot2 ggplotify magrittr patchwork]; }; aplpack = derive2 { name="aplpack"; version="1.3.5"; sha256="0kv6sbw8832hlfc6164bfvg1ga4hkfw4c7i11dlz7mbhrw2vqm24"; depends=[]; }; apng = derive2 { name="apng"; version="1.1"; sha256="0g1rs8wdcbqhyjis2r1a4d96jf0486ncnap97yjv08nk574d42wp"; depends=[bitops]; }; - apollo = derive2 { name="apollo"; version="0.2.8"; sha256="129qa303fckan6n8zdgsa08720aiyv623rz5mdv4l2by53i7lb2s"; depends=[coda Deriv matrixStats maxLik mnormt mvtnorm numDeriv randtoolbox Rcpp RcppArmadillo RcppEigen RSGHB stringr tibble]; }; - appRiori = derive2 { name="appRiori"; version="0.0.1"; sha256="1b90768p9v8mha9jq0zw3d7knwav9kv4l3wz3shx2s1y2lcap1np"; depends=[dplyr DT hypr markdown MASS pracma rhandsontable shiny shinythemes sortable stringr]; }; + apollo = derive2 { name="apollo"; version="0.2.9"; sha256="076i64l1n84ljdnklkj63n4q7ssg692h21dfbw8c0nxv4wsgzrm3"; depends=[bgw cli coda Deriv matrixStats maxLik mnormt mvtnorm numDeriv randtoolbox Rcpp RcppArmadillo RcppEigen RSGHB stringr tibble]; }; + appRiori = derive2 { name="appRiori"; version="0.0.2"; sha256="0qi840a3nlacbkiw3q6ikf2nddw5b1cq1v1llyhpbkmvd807bh8p"; depends=[dplyr DT hypr markdown MASS pracma rhandsontable shiny shinythemes sortable stringr]; }; + appeears = derive2 { name="appeears"; version="1.0"; sha256="1q01wzqhg9qzacdwh13bgr2v8z0mv673gh7sx5xa9a9z6g6spvwm"; depends=[geojsonio getPass httr jsonlite keyring memoise R6 rstudioapi sf]; }; appleadsR = derive2 { name="appleadsR"; version="0.1.0"; sha256="19xkzykk6zdbswdkfix9nqnfgab4r9c21rqwpma1r6fjapsp81jf"; depends=[jsonlite]; }; appler = derive2 { name="appler"; version="0.2.0"; sha256="1xd9rk80rj2ksx7h5qdy0qalc61wnzp9vihmlk1v9npx46i4rng0"; depends=[httr jsonlite rvest]; }; applicable = derive2 { name="applicable"; version="0.1.0"; sha256="1n81aa5by0fd47wjksdl0zpzf0w4vgrns6iqv5i9lqs7g64zggs0"; depends=[dplyr ggplot2 glue hardhat Matrix proxyC purrr rlang tibble tidyr tidyselect]; }; @@ -6092,7 +6172,7 @@ in with self; { arakno = derive2 { name="arakno"; version="1.3.0"; sha256="1mbbb4bzcck78wma9nrmpava81cii92rzjq0yl3p38zvnym2i2m9"; depends=[ape httr jsonlite phytools rgbif rworldmap rworldxtra]; }; arc = derive2 { name="arc"; version="1.3"; sha256="0isfa7d26jpj004lf4f06krbfa68zyzrh5431xa63k2dykvg8c5j"; depends=[arules discretization Matrix R_utils]; }; archdata = derive2 { name="archdata"; version="1.2-1"; sha256="1dahfl9xdnqiwzdrff98x23k1dl19sfdqnv7jlg1xzgvhj1fhk0d"; depends=[]; }; - archeoViz = derive2 { name="archeoViz"; version="1.0.0"; sha256="0zz9km1mdxw6n0g7njfv7abayvd4jfc0vzbl9z0wql5a0l6h3qmd"; depends=[cxhull ggplot2 htmlwidgets mgcv plotly reshape2 shiny shinythemes svglite]; }; + archeoViz = derive2 { name="archeoViz"; version="1.1.1"; sha256="1akyrsvjis97nsb4vzdk1x93695sw1ml1vr0psd2i9jkdd2l77dx"; depends=[cxhull ggplot2 htmlwidgets knitr mgcv plotly reshape2 shiny shinythemes svglite]; }; archeofrag = derive2 { name="archeofrag"; version="0.8.2"; sha256="1xnfb4midmjlhq2x8mv6r0mrjbm529xnfm8y0q9wll73igg696yl"; depends=[igraph]; }; archetypal = derive2 { name="archetypal"; version="1.3.0"; sha256="0xih81gwfwr1x9671gpzw49v95hmnl497hahxsyvdla87n1bfpc3"; depends=[doParallel entropy geometry inflection lpSolve Matrix plot3D]; }; archetyper = derive2 { name="archetyper"; version="0.1.0"; sha256="1d4vz7kj7n5j81fwfxvr47if8c7fdycci6n33wf8paac0v2paqli"; depends=[bannerCommenter config feather here knitr log4r ps readr rmarkdown skimr snakecase stringr testthat tidyverse]; }; @@ -6102,19 +6182,19 @@ in with self; { archiveRetriever = derive2 { name="archiveRetriever"; version="0.3.1"; sha256="0y01am255i682iaj55aiza6arlb0whqhamd09nqjrnwy4hmkbidq"; depends=[anytime dplyr ggplot2 gridExtra httr jsonlite lubridate rvest stringr tibble tidyr xml2]; }; archivist = derive2 { name="archivist"; version="2.3.6"; sha256="0q1qysack30xzxdbvvi56rk7r85hsj4ghls9r70ki7bl3rqwr4c9"; depends=[DBI digest flock httr lubridate magrittr RCurl RSQLite]; }; archivist_github = derive2 { name="archivist.github"; version="0.2.6"; sha256="092fzi505vx9xbk41m86d0isxna42iflp7q2kjiqa6z1ccvim2yx"; depends=[archivist digest git2r httr jsonlite]; }; - arcpullr = derive2 { name="arcpullr"; version="0.2.7"; sha256="1nbz5br6vm0ka9jn2cnkf2g90l6d0pzvma2x5dlq5arpg5jmca4b"; depends=[bslib dplyr DT ggplot2 httr jsonlite raster rgdal rlang sf tidyr]; }; + arcpullr = derive2 { name="arcpullr"; version="0.2.8"; sha256="1wdr18y2fld69f9rjb3jhd0dsq2q386djncpwcwypysb60rs7lpa"; depends=[dplyr DT ggplot2 httr jsonlite raster rlang sf tidyr]; }; arctools = derive2 { name="arctools"; version="1.1.6"; sha256="01a1kmkmnwm8ryv1hr0w79ghbk844w7fnv1yiq9mmwrs4jbgfrcf"; depends=[lubridate runstats]; }; ardl_nardl = derive2 { name="ardl.nardl"; version="1.2.3"; sha256="0havazgn9vblnp0sy8hc9r42sngj7lbm0ni13h148a9pcnpc8ax3"; depends=[car dplyr gets lmtest nardl rlist sandwich stringr texreg tseries]; }; ards = derive2 { name="ards"; version="0.1.1"; sha256="1dnq63klzbwvkcaxn9bng4wvh8mhggkwa69ypwf5kdn1rjways88"; depends=[]; }; area = derive2 { name="area"; version="0.1.0"; sha256="1dyxrfs69x3dssb7ifs024m4l3b1fdap1x5lkbkpas5ngyg7ivcz"; depends=[cpp11]; }; areabiplot = derive2 { name="areabiplot"; version="1.0.0"; sha256="0izgvlg174jbr3fm3qc8zh23kfs7hn9bwd40x6vm90iivrrgdcp7"; depends=[nipals]; }; areal = derive2 { name="areal"; version="0.1.8"; sha256="14hwif59lxjdf0crq5mp2w2rhz9b7l1b33r0ssd1j60ml2fv6488"; depends=[dplyr glue purrr rlang sf]; }; - areaplot = derive2 { name="areaplot"; version="1.2.3"; sha256="1j342mgjfxca38j4xx0bp35fjdx1xsfp1czdlpahavg5xm94lwbf"; depends=[]; }; + areaplot = derive2 { name="areaplot"; version="2.0.0"; sha256="15lkdrk9xyhpskvr884a4c8ap6hh3n0c0wmi10vxyafi6p2pdsl0"; depends=[]; }; arena2r = derive2 { name="arena2r"; version="1.0.0"; sha256="14zjpglp389pldi436935fz6mgi4jdgfii1m035nsvihrms9gqkh"; depends=[dplyr ggplot2 magrittr purrr rlang shiny shinyBS shinydashboard shinyjs tidyr]; }; arenar = derive2 { name="arenar"; version="0.2.0"; sha256="08b865v7ringqzm5m4ib4nrmlyqywir6bjj7alzmg06dy7mrl9s7"; depends=[auditor DALEX fairmodels gistr iBreakDown ingredients jsonlite plumber]; }; arf = derive2 { name="arf"; version="0.1.3"; sha256="0x5r8b76lzd6a7dzrnr63z7zjfhg75vwjzlzafw652wh2pc37fqk"; depends=[data_table foreach matrixStats ranger truncnorm]; }; arfima = derive2 { name="arfima"; version="1.8-1"; sha256="1msbd52989yqxqxgapgjvzfzzpkr2w9dp7ig8racqpzwqnjhpswb"; depends=[ltsa]; }; - argo = derive2 { name="argo"; version="3.0.1"; sha256="1q7gbyk2f8vimwzdmd1mfqyaql2gyawywilwzs6g1716gbk3gd80"; depends=[boot glmnet Matrix XML xtable xts zoo]; }; + argo = derive2 { name="argo"; version="3.0.2"; sha256="17ys6v2n84fp38zkc43whfgbc8qq1qx41q14899qgglz7xv4axzn"; depends=[boot glmnet Matrix XML xtable xts zoo]; }; argoFloats = derive2 { name="argoFloats"; version="1.0.6"; sha256="1ldnqg5zwczv3sfdy3s06gyri1a05l6qfgwab68ns0d24b69yrlk"; depends=[oce]; }; argonDash = derive2 { name="argonDash"; version="0.2.0"; sha256="1wykr7y5375g1nb18ynybccxmd948xrr0gdwxxqsfjf782vlgd2d"; depends=[argonR htmltools shiny]; }; argonR = derive2 { name="argonR"; version="0.2.0"; sha256="15hlvansqnky9bnq4r7xza3hb1hzylmhz8117wxz9lxa1wiky2is"; depends=[htmltools rstudioapi]; }; @@ -6125,7 +6205,7 @@ in with self; { ari = derive2 { name="ari"; version="0.3.5"; sha256="03w99c918jp23d0kl26vx4m7xjicpgwl5rhn9d0fsm4kvv7j87li"; depends=[hms progress purrr rmarkdown rvest text2speech tuneR webshot xml2]; }; aricode = derive2 { name="aricode"; version="1.0.2"; sha256="1w5jnql49f0wd5h4b89l69s7qldp7qm90p4jm0j4kz9w0vvm2kjz"; depends=[Matrix Rcpp]; }; arkdb = derive2 { name="arkdb"; version="0.0.16"; sha256="1xzp0j20z8vbzaalmxxqdcipd5fr6syw2k96fv2i6cf54xdaa1p3"; depends=[DBI]; }; - arkhe = derive2 { name="arkhe"; version="1.1.0"; sha256="0bhz4b37ii23dbqpgywv8q72lj4m41g3d43xfacn1qxc9khgwisn"; depends=[]; }; + arkhe = derive2 { name="arkhe"; version="1.2.0"; sha256="0bvlypa692pdfns9kjx45m3qvckppa47mx5m7z783pxcxxw01fak"; depends=[]; }; arm = derive2 { name="arm"; version="1.13-1"; sha256="0dz9dnsky77da2mc198dr3600kz9vk75z1iihjarnsdrq68a4bf0"; depends=[abind coda lme4 MASS Matrix nlme]; }; armada = derive2 { name="armada"; version="0.1.0"; sha256="191iwf5y1za3wssawkyi9jcingfqqxcvv88hglpw6j7y3x5f47hf"; depends=[anapuce circlize ClustOfVar ComplexHeatmap doParallel FAMT glmnet impute mvtnorm qvalue VSURF]; }; armspp = derive2 { name="armspp"; version="0.0.2"; sha256="098c59hdzr4ly8sx72xkcbjmiz5y65id1slsscwjji1yssb23lqq"; depends=[Rcpp]; }; @@ -6138,7 +6218,7 @@ in with self; { arrApply = derive2 { name="arrApply"; version="2.2"; sha256="0bp30622md9zzdgv9g1kqp5k450cd5yzpqji51wwcjp8l347fb6y"; depends=[Rcpp RcppArmadillo]; }; arrangements = derive2 { name="arrangements"; version="1.1.9"; sha256="0nrlyxgn6667l2rb1q5rvps1anld9aq88qqr3ch2i6zchnqxrdg9"; depends=[gmp R6]; }; arrayhelpers = derive2 { name="arrayhelpers"; version="1.1-0"; sha256="02rl530qxi1idiqpmzg5wr9vl5c7phizhpj64k5pn8xq9zfxbpaz"; depends=[svUnit]; }; - arrow = derive2 { name="arrow"; version="11.0.0.3"; sha256="1bvf04pmxckz3is04acsl7a86lha5b6qrxb2zmn8w8glymqr94zb"; depends=[assertthat bit64 cpp11 glue purrr R6 rlang tidyselect vctrs]; }; + arrow = derive2 { name="arrow"; version="12.0.0"; sha256="1hv18ksaghifj4jjdy1cf2ic0rrgfi7jbjpzxb7v6r3bbshs9vwi"; depends=[assertthat bit64 cpp11 glue purrr R6 rlang tidyselect vctrs]; }; ars = derive2 { name="ars"; version="0.6"; sha256="0zs1rk3i7pc9wcvxrvjcls194mfbvmkz7cb6pwd1cm3fzjwsyxsp"; depends=[]; }; arse = derive2 { name="arse"; version="1.0.0"; sha256="0ssaalc058m09gfcr1n0s729rx2plia3zkhlynj67drclyvhyb0i"; depends=[dplyr pracma]; }; arsenal = derive2 { name="arsenal"; version="3.6.3"; sha256="0qvs3ld28djnjnggdhqjwq8sbv8zz322qahlvf7dnx35yqf6xkms"; depends=[knitr]; }; @@ -6147,7 +6227,7 @@ in with self; { arules = derive2 { name="arules"; version="1.7-6"; sha256="0syrbh85vzhp9plm95dhq6pfanzbxqm4wcahw3y2d26gvi2nmzwm"; depends=[generics Matrix]; }; arulesCBA = derive2 { name="arulesCBA"; version="1.2.5"; sha256="13p876k3wg84khvzf6kkjpna0l9yjxyq43nh9dnpma7sidq5ldi0"; depends=[arules discretization glmnet Matrix]; }; arulesNBMiner = derive2 { name="arulesNBMiner"; version="0.1-8"; sha256="0kqvi7dzq3mrn6cq22gwxh4p54mgfn9s1sd2cfnbw1f9zp078lsn"; depends=[arules rJava]; }; - arulesSequences = derive2 { name="arulesSequences"; version="0.2-28"; sha256="170xy0hdd41j0cgd6n6fhcib1igwh10nqs06afxz0z0gs0parjh4"; depends=[arules]; }; + arulesSequences = derive2 { name="arulesSequences"; version="0.2-30"; sha256="1bnsgjjwrp1n5szhlyg3lhrhcz0sgdxsfdilbi5id9jbdkq9632a"; depends=[arules]; }; arulesViz = derive2 { name="arulesViz"; version="1.5-2"; sha256="0nvaqqc1k1zxzdqmrln1lhiqmrm98kg9rfsga9qf80cpcvxm79x5"; depends=[arules dplyr DT ggplot2 ggraph igraph plotly scatterplot3d seriation tibble tidyr vcd visNetwork]; }; asaur = derive2 { name="asaur"; version="0.50"; sha256="0c1rgic76w3i2xhna7i52lyc0p01s5b1mxyn55gqw6i19v9mq0b3"; depends=[]; }; asbio = derive2 { name="asbio"; version="1.9-2"; sha256="0xj71hx6y64qycgq0xg6z6avqxm34n523arsqkfjy3l1a4pqq1b4"; depends=[deSolve gWidgets2 gWidgets2tcltk lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; @@ -6163,9 +6243,10 @@ in with self; { ash = derive2 { name="ash"; version="1.0-15"; sha256="1ay2a2agdmiz7zzvn26mli0x0iwk09g5pp4yy1r23knhkp1pn2lb"; depends=[]; }; ashr = derive2 { name="ashr"; version="2.2-54"; sha256="177xs3apnc6yy6737qqv4z8snf0hkpbghab63hrplbyb9wfssfga"; depends=[etrunct invgamma Matrix mixsqp Rcpp SQUAREM truncnorm]; }; asht = derive2 { name="asht"; version="1.0.0"; sha256="1vv88qrbdjav025ccw0nvxlhmxnyjb5frn4wb7sbxxzaaqflcmhc"; depends=[bpcp coin exact2x2 exactci perm ssanv]; }; - askgpt = derive2 { name="askgpt"; version="0.0.2"; sha256="1wsrag2354czrifyvyf46yc7jlanp2h68zqi8anxb9nrwsjm8cm5"; depends=[callr cli dplyr glue httr2 jsonlite rappdirs rlang]; }; + askgpt = derive2 { name="askgpt"; version="0.1.1"; sha256="1yl7c5h242j8b9cbvd709d5gw15hm9b4lvb2s3vcn9zkxbb9h29g"; depends=[callr cli dplyr glue httr2 jsonlite rappdirs rlang]; }; askpass = derive2 { name="askpass"; version="1.1"; sha256="07q0ik8jzk44vpwh48rr3fnpd7dzsdhjjsl4l850rffv3dyq4h6v"; depends=[sys]; }; aslib = derive2 { name="aslib"; version="0.1.2"; sha256="1hy0ncanc3mb20yrby8s9hd8v2fg3x41vkj0jwl2b8znzl5n5b2n"; depends=[batchtools BBmisc checkmate corrplot data_table ggplot2 llama mlr parallelMap ParamHelpers plyr reshape2 RWeka stringr yaml]; }; + asmbPLS = derive2 { name="asmbPLS"; version="1.0.0"; sha256="08f4128abvy9pdkbdgiqnhm2v7f79lqbzp1132h52zq2n9wzxzmy"; depends=[ggplot2 ggpubr Rcpp RcppArmadillo]; }; asnipe = derive2 { name="asnipe"; version="1.1.16"; sha256="0ky4v85gry8r265z8p7mi9kzq6j3s032jg4wddkzjjqgxzyzjl5y"; depends=[MASS Matrix]; }; aspect = derive2 { name="aspect"; version="1.0-6"; sha256="13pb1pslyka706v13b7hdrzzn5bxmj2l5irpd9f1pm1n8a1ivrrl"; depends=[]; }; aspi = derive2 { name="aspi"; version="0.2.0"; sha256="0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87"; depends=[]; }; @@ -6192,11 +6273,11 @@ in with self; { assertr = derive2 { name="assertr"; version="3.0.0"; sha256="1wi3mz968clvwqg6mbm32zhj4vyfskklk72b4028cjsfdry6bpfp"; depends=[dplyr MASS rlang]; }; assertthat = derive2 { name="assertthat"; version="0.2.1"; sha256="17wy5bdfzg73sg2clisg1k3zyn1adkj59x56m5nwia2k8z67zkw5"; depends=[]; }; assignPOP = derive2 { name="assignPOP"; version="1.2.4"; sha256="1zzapgzf09l39bckwykzr8im2wxmndpmzykll2wi7njwlklpjry3"; depends=[caret doParallel e1071 foreach ggplot2 MASS randomForest reshape2 stringr tree]; }; - assignR = derive2 { name="assignR"; version="2.2.2"; sha256="04sygm8hx01lk8sj306w0nbha1wr86mfhi0q4sh31s145rq5rhs3"; depends=[geosphere maptools mvnfast raster rgdal rlang sp]; }; + assignR = derive2 { name="assignR"; version="2.2.3"; sha256="01p2sm5c105has0l8l0lcbf9nqzzyxif515qn825iz5r69wh16y7"; depends=[geosphere maptools mvnfast raster rgdal rlang sp]; }; assist = derive2 { name="assist"; version="3.1.8"; sha256="1ayr3mvv31dm3ff1jfwfshhrfhpyvqnshw3azp0pz96d1f9f31hj"; depends=[lattice nlme]; }; assocInd = derive2 { name="assocInd"; version="1.0.1"; sha256="16yzgvlqbapjhvzm5nw8vfrhh8mp9llnhck4bpgmszyrh93z1ha5"; depends=[]; }; assortnet = derive2 { name="assortnet"; version="0.20"; sha256="15qah885jjiwxrf1bhmbjpsamgylmy8cwjbd3w0di7n8j4zv6gwr"; depends=[]; }; - ast2ast = derive2 { name="ast2ast"; version="0.3.0"; sha256="125qnpcwlqbgzp98n7cx35c2ylxmhn3a0c99mn5py6m74sj969a5"; depends=[dfdr purrr R6 Rcpp RcppArmadillo rlang]; }; + ast2ast = derive2 { name="ast2ast"; version="0.3.1"; sha256="1418kvg4jvfn7c4vny87431a8lqkky9a51grkw8qc8sszcp7mlyf"; depends=[dfdr purrr R6 Rcpp RcppArmadillo rlang]; }; asteRisk = derive2 { name="asteRisk"; version="1.4.3"; sha256="0rfbm5c2lgs921ncajsjyyxzfiqls40xlxqp2pwp7c0rxhiz2rd6"; depends=[deSolve nanotime onion Rcpp RcppParallel]; }; aster = derive2 { name="aster"; version="1.1-2"; sha256="0vf1ffkn4a3bz2lgz1gn2hjgp8c2v9ch05d5r1gh2q77zijvry1m"; depends=[trust]; }; aster2 = derive2 { name="aster2"; version="0.3"; sha256="17d200sg0vn1fj6lb480dhszm70q6ipjldilb3x0jp72hiczakk9"; depends=[Matrix]; }; @@ -6210,7 +6291,7 @@ in with self; { asymmetry_measures = derive2 { name="asymmetry.measures"; version="0.2"; sha256="039afqmdir200aijln9q0g3rkahkxqahw6yz5mnw62jsslr9xskb"; depends=[gamlss_dist skewt sn]; }; asympTest = derive2 { name="asympTest"; version="0.1.4"; sha256="02l07psiy1888zx86j2r1l5lznz47wdmzbh39pd2nbj8r9i80szr"; depends=[]; }; asymptor = derive2 { name="asymptor"; version="1.1.0"; sha256="0g8z0nqjp4a9lxvdmzhyx1sqvdrkd9vd0b3i3qjbm4a542jf0aga"; depends=[]; }; - async = derive2 { name="async"; version="0.3.1"; sha256="19ws3kglk0qi4l2zhsl57vx7k1cf0lvcc6mm8svf0inf07dvivqn"; depends=[later nseval promises stringr testthat]; }; + async = derive2 { name="async"; version="0.3.2"; sha256="0xf3c6gr04drv7xxzpshycd13h5lm7r529f5q4ajrsl0m3hp9xpv"; depends=[iterors later nseval promises stringr testthat]; }; ata = derive2 { name="ata"; version="1.1.1"; sha256="08wcnfkbcq2al5ivdjkrjr8alaz0026992ra3ihyw6sd74mcracx"; depends=[lpSolve]; }; atable = derive2 { name="atable"; version="0.1.12"; sha256="1xzr51p0034znhylj51vq9jslkwkn1gjabaal5w9qrvy6cv1h828"; depends=[DescTools doBy effsize Hmisc plyr reshape2 settings]; }; atakrig = derive2 { name="atakrig"; version="0.9.8"; sha256="14li2lpb2bksrfdhvnhs4k22jw4r4x9rm6lq9kn9hzif7gsibwr9"; depends=[doSNOW FNN foreach gstat MASS Rcpp rgeos snow sp]; }; @@ -6221,7 +6302,7 @@ in with self; { atpolR = derive2 { name="atpolR"; version="0.1.1"; sha256="1mi2xghd5vxy6qx621dihx70wk3w1nqvm2h3j2drrb84b8zbvcvh"; depends=[Rdpack sf stringr terra]; }; attachment = derive2 { name="attachment"; version="0.3.1"; sha256="0dzh8y5k19m5mv7g9xif4lmkimsvkd3hzvdbqwb1f711wn8dh46d"; depends=[cli desc glue knitr magrittr rmarkdown roxygen2 stringr withr]; }; attempt = derive2 { name="attempt"; version="0.3.1"; sha256="1ylgg7jcp8wqmxgf1mydnvh26k0mr8jyjla4hw06730r40yrs58m"; depends=[rlang]; }; - attention = derive2 { name="attention"; version="0.2.0"; sha256="02k156k1yynr82f6rn3pdhc2ngsr0fr6k6rwvi7rhxl37ggh5id7"; depends=[]; }; + attention = derive2 { name="attention"; version="0.3.0"; sha256="0fnh0chdr9zbng6jan9hhgjqzk71cyh5nqv7325w8layqzld095k"; depends=[]; }; attenuation = derive2 { name="attenuation"; version="1.0.0"; sha256="0ys4psvkvimmym4qj9cmhq8y7x10kv0x6bsvpjkrsc3l8p2g3474"; depends=[]; }; attrib = derive2 { name="attrib"; version="2021.1.2"; sha256="17s3hjp8zdl28y4h9iv854y1hli5yg1h0kqhj8v5hms1lhx7c1qq"; depends=[arm data_table dlnm ggplot2 glue lme4 lubridate magrittr mvmeta pbs progress stringr tibble tsModel]; }; auRoc = derive2 { name="auRoc"; version="0.2-1"; sha256="152jdvzigcplii5amj0mnral3g2jyy3rfsc745mx36sspw1396yx"; depends=[coda MBESS ProbYX rjags]; }; @@ -6232,23 +6313,24 @@ in with self; { audit = derive2 { name="audit"; version="0.1-2"; sha256="0c8b94a5am196sbvmjxya7cg4aq6fcxr8c958fxx3jmy9r4hn6s2"; depends=[]; }; auditor = derive2 { name="auditor"; version="1.3.3"; sha256="1y6qpbc78yv2w1y9p0mczv69s661i9n2y0x09c5p3hdka7km662w"; depends=[DALEX ggplot2 ggrepel gridExtra hnp scales]; }; audrex = derive2 { name="audrex"; version="2.0.1"; sha256="1ifijkbqvdjp1si14p80mbqhq7sby8qgzr181agm3da1nkmic3vp"; depends=[fANCOVA ggplot2 imputeTS lubridate Metrics modeest moments narray purrr rBayesianOptimization readr scales stringr tictoc xgboost]; }; - audubon = derive2 { name="audubon"; version="0.5.0"; sha256="09hq7ky2xfp81kajanjbx3j26xj2dkng4xi52ywagk40858nzfmx"; depends=[dplyr magrittr Matrix memoise purrr readr rlang stringi V8]; }; + audubon = derive2 { name="audubon"; version="0.5.1"; sha256="17x4pk2anmj5gyf6wdg9n5zyqzbmp9hvj04ngv17jxv5b047pjc9"; depends=[dplyr magrittr Matrix memoise purrr readr rlang stringi V8]; }; augSIMEX = derive2 { name="augSIMEX"; version="3.7.4"; sha256="0620yxqi160ar91shl5macn890zpc60c9nqy4w8i6m7sskv6gl3z"; depends=[Formula MASS nleqslv Rcpp]; }; - augmentedRCBD = derive2 { name="augmentedRCBD"; version="0.1.5"; sha256="1bfb1jqakghf1nb3zwzf69cywwxwr1whzvyig8g3qa8ciq5f1h3i"; depends=[dplyr emmeans flextable ggplot2 mathjaxr moments multcomp multcompView officer Rdpack reshape2 stringi]; }; + augmentedRCBD = derive2 { name="augmentedRCBD"; version="0.1.6"; sha256="0ng292zgq18zqqhwkq6600hrg3akb76b7i4lzh6hd7vcbifl3f6m"; depends=[cli dplyr emmeans flextable ggplot2 mathjaxr moments multcomp multcompView numform officer openxlsx Rdpack reshape2 stringi]; }; auk = derive2 { name="auk"; version="0.6.0"; sha256="1l37izfjsypq2pbbifajilhi00fpbjdkpp6ahy3nxfsc7v22ldwr"; depends=[assertthat countrycode dplyr httr magrittr readr rlang stringi stringr tidyr]; }; aum = derive2 { name="aum"; version="2023.4.4"; sha256="10cx9r14s3izcdzfq717nhnh0ys8bsyibnrfsl71c785w5jgbad2"; depends=[data_table Rcpp]; }; - ausplotsR = derive2 { name="ausplotsR"; version="1.2.8"; sha256="1acbdg85p00xjz6rknagrwhwlibqn5l0qbk4b8ma6v1iwfgs25pp"; depends=[betapart curl ggplot2 gtools httr jose jsonlite mapdata maps maptools plyr R_utils sp vegan]; }; + ausplotsR = derive2 { name="ausplotsR"; version="1.2.9"; sha256="08iwcbsqlkbnj0jzc646x04sbwhq4pw7g9sxyr7bvfnfdj4ff3aa"; depends=[betapart curl ggplot2 gtools httr jose jsonlite mapdata maps maptools plyr R_utils r2r sp stringr vegan]; }; auth0 = derive2 { name="auth0"; version="0.2.3"; sha256="0pbnxq2f0bpj1gz8yn3wj3qn03dl08l7754k0ys7s49w2isx9y3h"; depends=[httr shiny shinyjs yaml]; }; auto_pca = derive2 { name="auto.pca"; version="0.3"; sha256="01m2ldpcxzj7fhgmr9wp4ha3gqdyh7l5bkrnw83smcbq5229hsyy"; depends=[plyr psych]; }; autoBagging = derive2 { name="autoBagging"; version="0.1.0"; sha256="01k44rgkpbbr3m2x360aq0fz2qi7nz036g5dsh2y3jy94rmddbyy"; depends=[abind caret cluster CORElearn e1071 entropy infotheo lsr MASS minerva party rpart xgboost]; }; autoCovariateSelection = derive2 { name="autoCovariateSelection"; version="1.0.0"; sha256="0s9ar7bmw0n84hvavp63zhm6769l9p88md0kqqcxl0mw67j8q930"; depends=[data_table dplyr purrr]; }; + autoEnsemble = derive2 { name="autoEnsemble"; version="0.2"; sha256="106hfhc5hp6v51drkhrv8dgxflqx8rljn6l91cy8hf6h3m0qy5x2"; depends=[curl h2o h2otools]; }; autoFC = derive2 { name="autoFC"; version="0.1.2"; sha256="1hxpmd753qpzlyjivn37m1kij3gpp9x6xyw1x6090h9n4girnya2"; depends=[irrCAC]; }; autoFRK = derive2 { name="autoFRK"; version="1.4.3"; sha256="1k3h2gsck06dnvrifg9rhxi6b3fwfjrkvg0q2wzb9kdnnzgiwcln"; depends=[fields filehash filehashSQLite filematrix FNN LatticeKrig MASS mgcv Rcpp RcppEigen RcppParallel RSpectra spam]; }; autoGO = derive2 { name="autoGO"; version="0.9.1"; sha256="19gy5gk214vqnil2wky2fpia1dlhcc4vwnws4fl2f0xq9as2nrq9"; depends=[ape ComplexHeatmap DESeq2 dichromat dplyr enrichR ggplot2 ggrepel GSVA imguR openxlsx purrr RColorBrewer readr reshape2 stringr SummarizedExperiment textshape tidyr tidyselect]; }; autoMFA = derive2 { name="autoMFA"; version="1.0.0"; sha256="1sbcl38cq7y7hln1qffk5s71xgg9hs7dlwyvynqf96z2z2421pw4"; depends=[abind expm MASS Matrix pracma Rdpack Rfast usethis]; }; - autoMrP = derive2 { name="autoMrP"; version="1.0.2"; sha256="11r849hglwgbqiq34q7xd3cdli5qrbqh90faj7pdm09sjkk4mn37"; depends=[doParallel doRNG dplyr e1071 EBMAforecast forcats foreach gbm ggplot2 glmmLasso knitr lme4 purrr R_rsp rlang tibble tidyr]; }; autoRasch = derive2 { name="autoRasch"; version="0.2.2"; sha256="15vgmpvcw7hi1i5kaqj9q126qmfa54h8ay9w6wa7yxjbginp9v7c"; depends=[doParallel foreach lavaan Rcpp RcppArmadillo]; }; - autoReg = derive2 { name="autoReg"; version="0.2.6"; sha256="1jgk6gkqz4fm2xznbvxj334b5bc7i2hkpz6jn8k31l3y8c5fzqcz"; depends=[boot broom crayon dplyr flextable ggplot2 maxstat mice moonBook nortest officer pammtools patchwork purrr rlang scales stringr survival tidycmprsk tidyr]; }; + autoReg = derive2 { name="autoReg"; version="0.3.2"; sha256="1isj04xphzf3r35bgzr9x1f2ra17jjw08dyjxgy8dfdmqhz2l2kh"; depends=[boot broom crayon dplyr flextable ggplot2 maxstat mice moonBook nortest officer pammtools patchwork purrr rlang scales stringr survival tidycmprsk tidyr]; }; + autoScorecard = derive2 { name="autoScorecard"; version="0.1.0"; sha256="1q0x34ni8bz0ipclzmi9fc06l8j75gpmpni18dr6f3bzjhq9pbdm"; depends=[corrplot discretization infotheo ROCR rpart]; }; autoTS = derive2 { name="autoTS"; version="0.9.11"; sha256="1mwpazynp5hdc2ccnhvddkajfcd4qam23pvjl9accq1rnxzxkiyv"; depends=[dplyr forecast ggplot2 lubridate magrittr plotly prophet RcppRoll rlang shiny shinycssloaders tidyr]; }; autocart = derive2 { name="autocart"; version="1.4.5"; sha256="1zgcmrm4dkdnr130hwwka2nwdczgvc3jc9hxrb6nfs8ijb24gl36"; depends=[fields mgcv Rcpp RcppArmadillo RcppParallel]; }; autocogs = derive2 { name="autocogs"; version="0.1.4"; sha256="0v27l9a0ysj7x9wjka1jl1bq9rmxmzldclcp1w59a6807wjlszhx"; depends=[broom checkmate diptest dplyr ggplot2 hexbin MASS mclust moments progress tibble]; }; @@ -6260,7 +6342,7 @@ in with self; { automagic = derive2 { name="automagic"; version="0.5.1"; sha256="1mmm6kj6mxrn3s4v8ryszkxr9z7bh9cvhin7xjq111fkwly7wjkq"; depends=[dplyr formatR knitr magrittr purrr remotes yaml]; }; automap = derive2 { name="automap"; version="1.1-9"; sha256="0hrsdynjxv0n5n1pbdk05rgrcwfd0g5p9pgdbicx4ljk73nhl1zk"; depends=[ggplot2 gstat lattice reshape sf sp stars]; }; automl = derive2 { name="automl"; version="1.3.2"; sha256="1nrg8q3y6rv69nmnsylg8rps4b4prx46j5a8ljlr24yc34504ck3"; depends=[]; }; - autonewsmd = derive2 { name="autonewsmd"; version="0.0.5"; sha256="1ygzb2d6p7680yl41d3l4909pd37rbpxi4qvy2ms44ahmy7140md"; depends=[data_table git2r magrittr R6 rmarkdown]; }; + autonewsmd = derive2 { name="autonewsmd"; version="0.0.6"; sha256="08y9cslk506bc2nmrzmzln7927yhdzghsfkkldgx94cm4ly6jagy"; depends=[data_table git2r magrittr R6 rmarkdown]; }; autoplotly = derive2 { name="autoplotly"; version="0.1.4"; sha256="1z577jvadgiz028z7x0786d3qhlkrvv9i34xmllizvg94kxv3bl1"; depends=[ggfortify ggplot2 plotly]; }; autoshiny = derive2 { name="autoshiny"; version="0.0.3"; sha256="0hwrsc08lq6zyx869qmiyd0fc83wqfyzx65a3s2j2xnzf4wwzgbq"; depends=[shiny]; }; autostats = derive2 { name="autostats"; version="0.4.0"; sha256="0xyfv2akv308g3r0wq2dcg7l24p6bf3524x1ikj1lfmw07hca6k6"; depends=[broom data_table dials dplyr framecleaner ggeasy ggplot2 ggthemes gtools janitor jtools magrittr nnet parsnip party patchwork presenter purrr recipes recosystem rlang rlist rsample stringr tibble tidyr tidyselect tune workflows xgboost yardstick]; }; @@ -6295,12 +6377,12 @@ in with self; { bRacatus = derive2 { name="bRacatus"; version="1.0.11"; sha256="0mj9bqgvmss9jdaphc4rgmxp4909lnwgi3c86pr6yfsd9zcjgd74"; depends=[data_table geojsonio jsonlite maptools plotfunctions raster rgbif rgdal rgeos rworldmap sp]; }; bReeze = derive2 { name="bReeze"; version="0.4-3"; sha256="17nc6qvw9l6sq8knd1mk193md2y3z1jlcjymqzl389yxj8s0i2il"; depends=[lubridate]; }; bSims = derive2 { name="bSims"; version="0.3-0"; sha256="055hqa5w4gaqz9mms9yj85wg0pgl6xa568nbjxm4qc75rsy91qg5"; depends=[deldir intrval MASS mefa4 pbapply]; }; - bWGR = derive2 { name="bWGR"; version="2.1"; sha256="0sqr0ylap610bw5v52hr8z3kl7c09rfs3l12zgc56cl04i0dab85"; depends=[Matrix Rcpp RcppEigen]; }; + bWGR = derive2 { name="bWGR"; version="2.2"; sha256="1932mnpcg3b3zhm7f95gnfjv5j7gr4r3j0rk682csq0jwby43dlg"; depends=[Matrix Rcpp RcppEigen]; }; baRcodeR = derive2 { name="baRcodeR"; version="0.1.7"; sha256="199cdbwphpz6ds19841s32bm2rjd7b6v484bvaskw94z0d8bcn6w"; depends=[DT miniUI qrcode rstudioapi shiny]; }; baRulho = derive2 { name="baRulho"; version="1.0.6"; sha256="17g3xs0lxdpbbi52x27r00vfdgxdhjblyy939scm3c5z01fhxxnb"; depends=[fftw pbapply seewave tuneR warbleR]; }; babel = derive2 { name="babel"; version="0.3-0"; sha256="1iwvx69051yhlxbcl6bypvc3mcih0q8bf3i29r3i79356hp12xqa"; depends=[edgeR]; }; babelgene = derive2 { name="babelgene"; version="22.9"; sha256="1ql5r1chl5ajzy9ppcnk755ia3m2a8n08m837dnm2ll3nzf02rnf"; depends=[dplyr rlang]; }; - babelmixr2 = derive2 { name="babelmixr2"; version="0.1.0"; sha256="1h9q3szl3svfryvnmsgnvlm5vrm4sp30sayh6xc1dbcbhrnh9df0"; depends=[checkmate cli digest lotri nlmixr2 nlmixr2est qs Rcpp RcppArmadillo RcppEigen rex rxode2 rxode2parse]; }; + babelmixr2 = derive2 { name="babelmixr2"; version="0.1.1"; sha256="1iwi4z4xsa0sv334yjf5cvh88408icgpsw19rj1mp31wa2pdj36h"; depends=[checkmate cli digest lotri nlmixr2 nlmixr2est nonmem2rx qs Rcpp RcppArmadillo RcppEigen rex rxode2 rxode2parse]; }; babelwhale = derive2 { name="babelwhale"; version="1.1.0"; sha256="01l8vwyz3bx0iks6cjs5y9ifdsnc1p1yqp4i0kzqd1gjhycizv6y"; depends=[crayon digest dplyr dynutils fs glue processx purrr]; }; babette = derive2 { name="babette"; version="2.3.2"; sha256="0y45pnip8zxjjvvdixyi3s6qanv7czx7wmbvpy8vj20nfffjzsdv"; depends=[beastier beautier mauricer phangorn remotes stringr tracerer xml2]; }; babsim_hospital = derive2 { name="babsim.hospital"; version="11.8.8"; sha256="03kd9kvqq0jy1f7qjbbmm5zn8w0nqwwdpan64ymyzmsxb59407cj"; depends=[checkmate curl data_table dplyr ggplot2 golem igraph lubridate markovchain padr plyr rvest scales simmer slider SPOT testthat xml2]; }; @@ -6321,9 +6403,10 @@ in with self; { baguette = derive2 { name="baguette"; version="1.0.1"; sha256="0y298la45hgw7f58ydq198ycga8bzxh0czv9l3xdrprd1bhmdn1x"; depends=[butcher C50 dials dplyr earth furrr generics hardhat magrittr parsnip purrr rlang rpart rsample tibble tidyr withr]; }; bahc = derive2 { name="bahc"; version="0.3.0"; sha256="0yz0v33fhm38ivhr7bvajk9v7wdmhg9qg7ac8r2qr00rns82m6y3"; depends=[fastcluster matrixStats]; }; bain = derive2 { name="bain"; version="0.2.8"; sha256="101rlxf1m6nrmzwxxv2w0m2a9s26l39a5nfjnad8gza5rvj7q076"; depends=[lavaan]; }; - baizer = derive2 { name="baizer"; version="0.3.0"; sha256="0bmk4azxzkhia35c8hfvh9n2dllzya9s9c7mcjil0n7ai8bj0ql0"; depends=[dplyr magrittr openxlsx purrr rlang rstatix stringr tibble tidyselect]; }; + baizer = derive2 { name="baizer"; version="0.5.0"; sha256="1smdiivh8d643y8cj5fsi0gd37c3jgld331zrdx4ykip7gqa1467"; depends=[curl dplyr magrittr openxlsx purrr rlang stringr tibble tidyr]; }; bakR = derive2 { name="bakR"; version="0.4.0"; sha256="1q3ly0a9krj7ykrq9fni2f5lyfyg697dpcqdnmw2dsc8b4a4psbp"; depends=[BH data_table dplyr ggplot2 Hmisc magrittr purrr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; bakeoff = derive2 { name="bakeoff"; version="0.2.0"; sha256="0i40vnwgy4db8flfcx23zh5a7mmp4dhckhzayj34smqfmfm5xzkl"; depends=[]; }; + baldur = derive2 { name="baldur"; version="0.0.1"; sha256="00b3z984c20i589arcylx3pgln0sqz1fg8mf69mnlxqrpr9yh88b"; depends=[BH dplyr ggplot2 lifecycle magrittr multidplyr purrr Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools StanHeaders stringr tibble tidyr viridisLite]; }; bama = derive2 { name="bama"; version="1.3.0"; sha256="1ydm9p6msmgi74rhrji2j14qy7cg7fqgg4ffm9rz293k27n5ghnn"; depends=[BH Rcpp RcppArmadillo RcppDist]; }; bamboo = derive2 { name="bamboo"; version="0.9.25"; sha256="1il8sn8ck36b1m9hazhf6gmr58iqi2hjn0rrpcv1laij0lybrcws"; depends=[rscala]; }; bambooHR = derive2 { name="bambooHR"; version="0.1.0"; sha256="1m9kzr698lgcilmr5w5zs6q9rgpcdvqiavrhh6c4ar6ii07n274s"; depends=[cli curl dplyr fs glue httr janitor jsonlite lubridate magrittr purrr rlang stringr testthat tibble tidyr withr]; }; @@ -6333,7 +6416,7 @@ in with self; { bamp = derive2 { name="bamp"; version="2.1.3"; sha256="0qzcndjdwbgiwyvc7ikb7jr0n7cmn78v56h5in22j24jjj740l2z"; depends=[abind coda]; }; bandit = derive2 { name="bandit"; version="0.5.1"; sha256="0zj98x4kwv8fr6j78vg0hzlsjd4w5l4nbazkpxqkn5yyd6g0v9h4"; depends=[boot gam]; }; banditpam = derive2 { name="banditpam"; version="1.0-1"; sha256="05ym5x178rgfvpvqgiv46ly6xnk44d0j74ykdxkzshil7aig1xfk"; depends=[R6 Rcpp RcppArmadillo]; }; - bandsfdp = derive2 { name="bandsfdp"; version="1.0.0"; sha256="1rs86hfghr3wixqfm9x8s1zaid6nxmh8xkda1257k7q0gbdy8pf1"; depends=[]; }; + bandsfdp = derive2 { name="bandsfdp"; version="1.1.0"; sha256="07w381i8cls1hf1mdl4qy3vxp7xx0czng3fl3bzrbk80mysjf47n"; depends=[]; }; bang = derive2 { name="bang"; version="1.0.1"; sha256="0m7p9gzspkyp40ir842ff4b1827w9rh7x49kpp3y4dpi83krqy5a"; depends=[bayesplot rust]; }; bangladesh = derive2 { name="bangladesh"; version="1.0.0"; sha256="1vjrashph4n8njm6yk8slywmfwxqrvdmb2ybgp23vdxjhk3rlrzl"; depends=[sf tmap]; }; bannerCommenter = derive2 { name="bannerCommenter"; version="1.0.0"; sha256="1i0b3v4n0xylcbrg9i3a28z037m27vjfg61xz2hl99wavn0bsl1j"; depends=[]; }; @@ -6342,11 +6425,12 @@ in with self; { bapred = derive2 { name="bapred"; version="1.1"; sha256="1pnhq1li0c4pvgvwsaxxzsgbdyjnb96s1hciqanzgbd1d4577lvp"; depends=[affy affyPLM Biobase FNN fuzzyRankTests glmnet lme4 MASS mnormt sva]; }; barcode = derive2 { name="barcode"; version="1.3.0"; sha256="1kk5nwh810l5vix6qzwl28cfi8rk7vc35hv73whk1bkndv2y4qx0"; depends=[lattice]; }; bardr = derive2 { name="bardr"; version="0.0.9"; sha256="02499b3j10j7qq3whz9qijfp3amp0s1ji8qk76c53dsnkj8f9hvs"; depends=[]; }; + bark = derive2 { name="bark"; version="1.0.4"; sha256="16bfws2ffcqn848vfa586z3gwjh5jfb2x887pwk05hpyd1ny9cm9"; depends=[]; }; bartBMA = derive2 { name="bartBMA"; version="1.0"; sha256="15syk5a3lgzfyp17wk8mk14317yxsr47br26kyah5jg3dq4cyqdg"; depends=[BH mvnfast Rcpp RcppArmadillo Rdpack]; }; bartCause = derive2 { name="bartCause"; version="1.0-6"; sha256="00mxj92qpgs26dlj0cabxa6zjvwp4987nxhxgsb0npvb8zjm3sdn"; depends=[dbarts]; }; bartMachine = derive2 { name="bartMachine"; version="1.3.3.1"; sha256="0py6fbp5la70g3hwhk554gs13ns51g9yza1kv78bf6dh0bv7mcn4"; depends=[bartMachineJARs missForest randomForest rJava]; }; bartMachineJARs = derive2 { name="bartMachineJARs"; version="1.2.1"; sha256="1h71ikmj217wjd1w52qvxf6p3alnqxg1zn43dzhlkhmfyjn20ylz"; depends=[rJava]; }; - bartcs = derive2 { name="bartcs"; version="1.0.0"; sha256="0xfyvm4pd0wcdhj3id1rrd5915ddv02rzy077ld111qnyvibmxld"; depends=[ggcharts ggplot2 invgamma MCMCpack Rcpp rlang rootSolve]; }; + bartcs = derive2 { name="bartcs"; version="1.2.0"; sha256="11y4bal4acqcdc48hqbxmqq2kgdjkj4l4z2nadcgalflwjdzlbhw"; depends=[coda ggcharts ggplot2 invgamma MCMCpack Rcpp rlang rootSolve]; }; basad = derive2 { name="basad"; version="0.3.0"; sha256="0g8zfphwbvxq1ydvsaj0dvidsikrriyi80cam9i3syhx0v20vnir"; depends=[Rcpp RcppEigen rmutil]; }; base_rms = derive2 { name="base.rms"; version="1.0"; sha256="0lsbbcvmq5n3dpqic9qkyr8wdbmagaw32qfdnl0ck5b6ijh2wz0a"; depends=[do rms survival]; }; base64 = derive2 { name="base64"; version="2.0.1"; sha256="1w9m4n29xmj7px8fbmha04vq146bxfqi7ipj1ag09hlm05y6h8jd"; depends=[openssl]; }; @@ -6356,11 +6440,11 @@ in with self; { baseballr = derive2 { name="baseballr"; version="1.5.0"; sha256="0n6ajc846cddi7617pgkm2ywkl7147m2gnhwx8wm4jyj7g3snsw3"; depends=[cli data_table dplyr ggplot2 glue httr janitor jsonlite lubridate magrittr purrr Rcpp RcppParallel rlang rvest stringr tibble tidyr]; }; basecamb = derive2 { name="basecamb"; version="1.1.2"; sha256="01zigv4wp19vmp645dzvbr26nrvhv4jxpqssvfc480v0dj3mavva"; depends=[assertive_types assertthat dplyr Hmisc mice purrr survival]; }; basedosdados = derive2 { name="basedosdados"; version="0.2.2"; sha256="18gfk7hivp68mgbgx60qbpcy28ysj4llzwdji5a57rrczwffr6p0"; depends=[bigrquery cli DBI dbplyr dotenv dplyr fs glue httr magrittr purrr readr rlang scales stringr tibble typed writexl]; }; - basefun = derive2 { name="basefun"; version="1.1-3"; sha256="1jn4dza9yh3mq57fvjkhsxl19hcbjmi667mcmhvk68x2vqxccl48"; depends=[Matrix orthopolynom polynom variables]; }; + basefun = derive2 { name="basefun"; version="1.1-4"; sha256="1m258ycxc9m2xdpvqzjk0hz3fg3bwbj3z2yx6raf315ws4s2h47f"; depends=[Matrix orthopolynom polynom variables]; }; baseline = derive2 { name="baseline"; version="1.3-4"; sha256="1kl68zvyi2zd73jy3axrvrymwn4y6l4pd62nz0fciwbgkjhz3yyx"; depends=[limSolve SparseM]; }; basemaps = derive2 { name="basemaps"; version="0.0.5"; sha256="02rk613abn1919hm5kgj1jpl5aldiq282wwadxjrz9gdb782lwrk"; depends=[curl httr magick pbapply sf slippymath terra]; }; - baseq = derive2 { name="baseq"; version="0.1.0"; sha256="13h6yv88k3gyapz4r04vi5r95rfdnm1hww061mns6d68yr3lg06k"; depends=[stringr]; }; - basetheme = derive2 { name="basetheme"; version="0.1.2"; sha256="0yck4qc7qd406s7kw95xgnfc0pfvzk3ylhkv6mk6l2wbkfm8ldrb"; depends=[]; }; + baseq = derive2 { name="baseq"; version="0.1.4"; sha256="012p6xs9dkvpwcqkm9qgnc5v6sg6qhwpcaqxfnwx30fpim99liai"; depends=[]; }; + basetheme = derive2 { name="basetheme"; version="0.1.3"; sha256="0g1dsim688zl309svbv29g5ya23x71al4kribmy279vwqiddzl8z"; depends=[]; }; basf = derive2 { name="basf"; version="0.2.0"; sha256="0l3y5p51jic3b8h1jclhhma4myll1g3vsxr8rj0dx1bvjfimkryw"; depends=[raster sf tibble]; }; basicMCMCplots = derive2 { name="basicMCMCplots"; version="0.2.7"; sha256="02lwkbpr9yj5q7l3ing1v47c4ifvwaxn8yyr3b34fral08cgpn9x"; depends=[]; }; basicspace = derive2 { name="basicspace"; version="0.24"; sha256="1cy226njbax7dcgql89fns4l4w9fq328x3h0vb93l5jk883jgi8h"; depends=[]; }; @@ -6372,10 +6456,10 @@ in with self; { batata = derive2 { name="batata"; version="0.2.1"; sha256="0z3pj37jydidw3lq1yvp1yv1vqbm28nhj0v4kb3n30dl00kd0hmy"; depends=[fs glue jsonlite lubridate purrr remotes]; }; batch = derive2 { name="batch"; version="1.1-5"; sha256="0wdgfvk2i542cqg34ikvzwlix09f2jyjb32a0f4zh9vg9nrywswq"; depends=[]; }; batchmeans = derive2 { name="batchmeans"; version="1.0-4"; sha256="0b2npqxrv08zxj59sahj5s87inhl6dyl10bj01v0l1yr14q5g546"; depends=[]; }; - batchmix = derive2 { name="batchmix"; version="1.0.1"; sha256="03iz9j3m3ihgbyzincik2i8izw3g5cmjhnsmx8ys2q6c6qzw2mnn"; depends=[ggplot2 Rcpp RcppArmadillo testthat tidyr]; }; + batchmix = derive2 { name="batchmix"; version="2.0.0"; sha256="18m0c6v5mjij9msnhy00lq6yjndb9b5cxjhzd6wqkvrykdl72q79"; depends=[ggplot2 Rcpp RcppArmadillo salso testthat tidyr]; }; batchscr = derive2 { name="batchscr"; version="0.1.0"; sha256="094l2cq7lcdrlsdmsxmbal7srxdg20rxbms46h1sd414wq26d413"; depends=[]; }; batchtma = derive2 { name="batchtma"; version="0.1.6"; sha256="1ii7iiq6vhfqnhzp5xpl40g2gdmm9c7ib3kg8fbswg99f96hqhbp"; depends=[broom dplyr geepack ggplot2 limma magrittr nnet purrr quantreg rlang stringr tibble tidyr]; }; - batchtools = derive2 { name="batchtools"; version="0.9.16"; sha256="1fpmbsb0qp91kv7hjk6f7j41gvmz3xcxfcrr4bz2x62k0j7fmgsi"; depends=[backports base64url brew checkmate data_table digest fs progress R6 rappdirs stringi withr]; }; + batchtools = derive2 { name="batchtools"; version="0.9.17"; sha256="1rlvfk0279saf930z48g230p9z30dd7qil9aiprjn35px1advqdn"; depends=[backports base64url brew checkmate data_table digest fs progress R6 rappdirs stringi withr]; }; bate = derive2 { name="bate"; version="0.1.0"; sha256="1jrf614g5699ygw73pda7dk79ydx57sc8wpq4vg51yy98arhidc2"; depends=[concaveman dplyr ggplot2 latex2exp magrittr purrr tidyselect vtable]; }; batman = derive2 { name="batman"; version="0.1.0"; sha256="0ccgx506p4iri23k2ikb8jmh04dp08w66785bv52iy8kd359h43f"; depends=[Rcpp]; }; batsch = derive2 { name="batsch"; version="0.1.0"; sha256="1mjlggjwfi7wrksilkh6nchzg9d6zcnazn2y0a4w6ffl78zdaxv1"; depends=[magrittr tibble]; }; @@ -6388,7 +6472,7 @@ in with self; { bayesAB = derive2 { name="bayesAB"; version="1.1.3"; sha256="1mwwbkd8mqm22mkbgrp5mq7i52qqjr9if09fnhb3ybdpqq3sdg73"; depends=[ggplot2 Rcpp rlang]; }; bayesCT = derive2 { name="bayesCT"; version="0.99.3"; sha256="0ragig1x34syhsnbnd58l2s7g23j7fb0cl9wkasvxq8cicw5hqgn"; depends=[bayesDP dplyr magrittr purrr survival]; }; bayesDP = derive2 { name="bayesDP"; version="1.3.6"; sha256="0li063187icw96shrbawfa00vkb42m5y38a4j2aahryajjlsva57"; depends=[ggplot2 MCMCpack Rcpp RcppArmadillo survival]; }; - bayesDccGarch = derive2 { name="bayesDccGarch"; version="3.0.3"; sha256="0qgcy70sp3mlcpdkkg3nvxrvwgwy698r19yg31s3qjak17jnp8qn"; depends=[coda numDeriv]; }; + bayesDccGarch = derive2 { name="bayesDccGarch"; version="3.0.4"; sha256="1wv36yv43m8fkpk59hfrw3672p95lzhapr0d4n3jynsfhf6ivpm6"; depends=[coda numDeriv]; }; bayesGAM = derive2 { name="bayesGAM"; version="0.0.2"; sha256="13zs68d26c66hkm8mfhcygk8rw6sdg4rf4a4az254lf2xvypbh5d"; depends=[bayesplot BH boot cluster corrplot geometry ggplot2 gridExtra loo MASS mlbench Rcpp RcppEigen RcppParallel rstan rstantools SemiPar StanHeaders]; }; bayesGARCH = derive2 { name="bayesGARCH"; version="2.1.10"; sha256="1jb7jfyxp210pc8myv9lnwb55hy19d39m10kkhs5lyjwc2lv0401"; depends=[coda mvtnorm]; }; bayesImageS = derive2 { name="bayesImageS"; version="0.6-1"; sha256="0hz6ynvrhsxp097zswdlascza5n27cq4hfaqdc3r8b7crmh7lrim"; depends=[Rcpp RcppArmadillo]; }; @@ -6398,6 +6482,7 @@ in with self; { bayesPop = derive2 { name="bayesPop"; version="9.0-1"; sha256="15lisc0wvijmdjgw7n5fadbz4g702v9rp748h5xp5r6qk32g3njx"; depends=[abind bayesLife bayesTFR data_table fields googleVis MortCast plyr reshape2 rworldmap wpp2012 wpp2019]; }; bayesQR = derive2 { name="bayesQR"; version="2.3"; sha256="1c6y7r9h9626ghp68pl5k1g0l95fwd6dp0jfznmhy53qza0ny8z4"; depends=[]; }; bayesROE = derive2 { name="bayesROE"; version="0.1"; sha256="05darwx45bv6p9qscnw169jza4yd3m2d5bgpr35yil7p68dl0w2b"; depends=[colourpicker config ggplot2 golem scales shiny shinyBS]; }; + bayesRecon = derive2 { name="bayesRecon"; version="0.1.0"; sha256="0gghr5h3i46xw6pi4zmx4gm55d4m3m2ihdkvg0j4qalrywb398ys"; depends=[lpSolve]; }; bayesTFR = derive2 { name="bayesTFR"; version="7.3-2"; sha256="1pxjbis26ck0fd2f19f0i0mn54wzis89niqhm3b6vz9zvv3angzh"; depends=[coda data_table lifecycle MASS mvtnorm wpp2019]; }; bayesZIB = derive2 { name="bayesZIB"; version="0.0.4"; sha256="02n76vw38xd1p6j2r505mkbfvnwij7i5lx8x6w9hrsnh9q0dy6dw"; depends=[BH ggplot2 Rcpp RcppEigen rstan rstantools StanHeaders]; }; bayesammi = derive2 { name="bayesammi"; version="0.1.0"; sha256="1vfcmk47x71c5akj3ppxzb74293pikspknkkv08f8p15v0chk7fs"; depends=[dplyr ggplot2 lme4 magrittr MASS mvtnorm rlang rstiefel scales tibble tidyr tmvtnorm]; }; @@ -6419,22 +6504,22 @@ in with self; { bayeslongitudinal = derive2 { name="bayeslongitudinal"; version="0.1.0"; sha256="0g45ikpnbry1albb3asrzab5z3sy98yf74c64qn02d65xgafifwg"; depends=[LearnBayes MASS mvtnorm]; }; bayesm = derive2 { name="bayesm"; version="3.1-5"; sha256="18j7h32nq4hx1qnxfgfgz3q39q35lmvsq3im90xjkphyli60f8zj"; depends=[Rcpp RcppArmadillo]; }; bayesmeta = derive2 { name="bayesmeta"; version="3.2"; sha256="12lgbbvg6ywpr42ig8rfbki1fv9j294jr1nsq0gpr2khj4nw6npi"; depends=[forestplot metafor mvtnorm numDeriv]; }; - bayesmix = derive2 { name="bayesmix"; version="0.7-5"; sha256="0s1a221vwia92pinja2r5b5abm4dhcrs81m4frqnf0522qh0y75f"; depends=[coda rjags]; }; + bayesmix = derive2 { name="bayesmix"; version="0.7-6"; sha256="0gzzzgjbz4aw2zrd5grvd1r0zlycxkgyq4hj1mcbwkfs2dd00msk"; depends=[coda rjags]; }; bayesmove = derive2 { name="bayesmove"; version="0.2.1"; sha256="1l6i8qh7l53x0133gjc5jvri4vnnfviq9y3mcr1kfa5j84gfnmsf"; depends=[dplyr dygraphs furrr future ggplot2 leaflet lubridate magrittr MCMCpack progress progressr purrr Rcpp RcppArmadillo rlang sf shiny tictoc tidyr]; }; bayesnec = derive2 { name="bayesnec"; version="2.1.0.3"; sha256="1fvsr8qs9f3nnpb6jm33cqsc6i851r1fclv0qzlvxgx6z428fha5"; depends=[brms chk dplyr evaluate extraDistr formula_tools ggplot2 loo purrr rlang tidyr tidyselect]; }; - bayesplay = derive2 { name="bayesplay"; version="0.9.2"; sha256="06i16a36b26p0r635bl37kvk7k083p970154yhkv80p7qc84n4sv"; depends=[gginnards]; }; + bayesplay = derive2 { name="bayesplay"; version="0.9.3"; sha256="1gc5gfyd03rir3yrjsqj6448wvbw49n6c789hzfqwignk3vjc555"; depends=[gginnards]; }; bayesplot = derive2 { name="bayesplot"; version="1.10.0"; sha256="1zqka7lg7a6ccli1yzhk1n13vbrlp8m0kjxmykjqmkz438mvjk5v"; depends=[dplyr ggplot2 ggridges glue posterior reshape2 rlang tibble tidyselect]; }; bayesreg = derive2 { name="bayesreg"; version="1.2"; sha256="0yrx7y39xxmm0z4myj6ma24dkkhgcily5baxr6yf9balgvhd5wf4"; depends=[pgdraw]; }; bayesrules = derive2 { name="bayesrules"; version="0.0.2"; sha256="0a1a1aq91ary985xd0qqc1sgjlyfcrjh7ngzcy4f7j09a7ch3j4b"; depends=[dplyr e1071 ggplot2 groupdata2 janitor magrittr purrr rstanarm]; }; bayess = derive2 { name="bayess"; version="1.5"; sha256="1dhkyz3dz04rghl5fpjdz1n5d6v053km25hkq0ssdcvrbsms62c8"; depends=[combinat gplots mnormt]; }; bayest = derive2 { name="bayest"; version="1.4"; sha256="1ax1z5aw0irpr5qmfscvbssrz58ablx0nkl0d9fx51f2g1cwm65n"; depends=[MCMCpack]; }; - bayestestR = derive2 { name="bayestestR"; version="0.13.0"; sha256="1951zm88qlbmr4ragrzfzgw72awm7mqhh464s6kck0mcx7shas90"; depends=[datawizard insight]; }; + bayestestR = derive2 { name="bayestestR"; version="0.13.1"; sha256="0mmnifi3j29qlsj917wbdqpgpk05x3cc7111k842gsv7y34h4ir7"; depends=[datawizard insight]; }; bayesvl = derive2 { name="bayesvl"; version="0.8.5"; sha256="1gb2in8hjiqb3daqz6phn1639i6p2w641kxrm3zh4rm3d6hg6hzr"; depends=[bayesplot bnlearn coda dplyr ggplot2 reshape2 rstan StanHeaders viridis]; }; bayfoxr = derive2 { name="bayfoxr"; version="0.0.1"; sha256="1295296mbjpmd0bg1pfxvyp0az3sry6gsq9ir3l8x64w5a4qrzd5"; depends=[]; }; baygel = derive2 { name="baygel"; version="0.1.0"; sha256="1kzz2nhxwhqairn78fmk9pfxfrsfr5q6vzw75mxgbr0g83fzqznd"; depends=[Rcpp RcppArmadillo RcppProgress]; }; baymedr = derive2 { name="baymedr"; version="0.1.1"; sha256="0lsp9g9xjwwf2znh4vld41pgdn55ncvmdsyg84ifhdqzjrsgwc6f"; depends=[rlang stringr]; }; baystability = derive2 { name="baystability"; version="0.1.0"; sha256="1zv4bf5a4p21w2qpr6lcsgsxb0xv15v8p33031rsypmnbs9i80dp"; depends=[dplyr ggfortify ggplot2 lme4 magrittr MASS matrixStats reshape2 rlang rstiefel scales tibble tidyr tidyverse]; }; - baytrends = derive2 { name="baytrends"; version="2.0.8"; sha256="0la75qngy09hvcyrgnra37m3v7hpn8y7crz2nw73vrm118prj9mq"; depends=[dataRetrieval digest dplyr fitdistrplus knitr lubridate memoise mgcv pander plyr readxl sessioninfo survival]; }; + baytrends = derive2 { name="baytrends"; version="2.0.9"; sha256="1xkkww2mf961wdpyyxngz51i2yyhimca48vnm7s1j58p7zv3vsyz"; depends=[dataRetrieval digest dplyr fitdistrplus knitr lubridate memoise mgcv pander plyr readxl sessioninfo survival]; }; bazar = derive2 { name="bazar"; version="1.0.11"; sha256="1q2w5pvlb51lzbb5k719sf1lrhffandkfqlcvi2prw4dmq7qjxv9"; depends=[kimisc]; }; bbdetection = derive2 { name="bbdetection"; version="1.0"; sha256="1j6xcbfsrg3wcr1rpddj7ia33szn5bs0wk4mzq42d761clsr5qq8"; depends=[ggplot2 Rcpp xtable zoo]; }; bbknnR = derive2 { name="bbknnR"; version="1.0.2"; sha256="018szrk8xskvill181jc3xji9gapn4z6ps1rfh7fgga9334726vs"; depends=[dplyr glmnet Matrix Rcpp RcppAnnoy reticulate Rtsne Seurat SeuratObject tidytable uwot]; }; @@ -6442,7 +6527,6 @@ in with self; { bbmle = derive2 { name="bbmle"; version="1.0.25"; sha256="0mdj21q7k0fp4cj7la14vmcjmp49zqm57g7r6zrwmxpv0acwda46"; depends=[bdsmatrix lattice MASS Matrix mvtnorm numDeriv]; }; bbotk = derive2 { name="bbotk"; version="0.7.2"; sha256="1gw0rkbiv93ifl9110r9sr0p9g4vg7qc11mznmmjq0a5vzmqgpm9"; depends=[checkmate data_table lgr mlr3misc paradox R6]; }; bbreg = derive2 { name="bbreg"; version="2.0.2"; sha256="0mi2834v4cvrhvpnzkb4lgkqq993c3c1yzsxdnmny4p6yxw1q547"; depends=[expint Formula pbapply statmod]; }; - bbricks = derive2 { name="bbricks"; version="0.1.4"; sha256="1hv4hvnns9vgl6c3n7kg3g9mfcp26ksps29hdl5nwi28cgkx80w2"; depends=[]; }; bbsBayes = derive2 { name="bbsBayes"; version="2.5.3"; sha256="0vh7idcj89l5nlgg0kf41pvs1d1lpn5r1p254afcycn0sr06ky6f"; depends=[dplyr geofacet ggplot2 ggrepel jagsUI mgcv progress rappdirs sbtools sf stringr]; }; bbw = derive2 { name="bbw"; version="0.2.0"; sha256="0gycjqn36msa6cl4zdrjv2bpv14xm8m6nsc3rfjm8mw9zjjzrw6g"; depends=[car withr]; }; bc3net = derive2 { name="bc3net"; version="1.0.4"; sha256="15dghd0v1s71h77iw8b49v5h7wcda5mb4540lfyibsdipbashv2h"; depends=[c3net igraph infotheo lattice Matrix]; }; @@ -6450,19 +6534,18 @@ in with self; { bcaboot = derive2 { name="bcaboot"; version="0.2-3"; sha256="0b1m4lwi9hwd4xswabzyy2svc91ppiym8bi9f1wj79w5sg2hxpn7"; depends=[]; }; bccp = derive2 { name="bccp"; version="0.5.0"; sha256="0g9yzqzf977rx97c77krdhl7c499r58xcbzx0nihk73143ynf17w"; depends=[pracma]; }; bcdata = derive2 { name="bcdata"; version="0.4.1"; sha256="05izx4bpk60icwnsy4698cm4dyxmmffss59dca8zrrh4i4pql72f"; depends=[cli crul DBI dbplyr dplyr glue jsonlite leaflet leaflet_extras purrr readr readxl rlang sf tibble tidyselect xml2]; }; - bcf = derive2 { name="bcf"; version="1.3.1"; sha256="04vjvzh8y1dfk6ms5zwbylbfalwngvyjbjcszx26v2fakdk990p7"; depends=[Rcpp RcppArmadillo]; }; bcfrailph = derive2 { name="bcfrailph"; version="0.1.1"; sha256="0qq885wfd7sr8cjxygw33l321q7jk4b6996p0j6inzlwycs8d6bc"; depends=[survival]; }; bcfrailphdv = derive2 { name="bcfrailphdv"; version="0.1.1"; sha256="1amfpyb9y7ngfq1npnjwzgbs6g3dmpp979q7ajf0khjgj55fkirw"; depends=[bcfrailph survival]; }; bcgam = derive2 { name="bcgam"; version="1.0"; sha256="1dg2fcjw8xal77irviiz260qpar2iqkjvi2k4qfm71jyq0ir0axk"; depends=[coda igraph nimble]; }; - bcmaps = derive2 { name="bcmaps"; version="1.1.0"; sha256="1317xqhd222aj6qcdhb1xpbfqsf9n3ww8rap90sm98rljvp5zdca"; depends=[bcdata httr jsonlite progress rappdirs sf xml2]; }; + bcmaps = derive2 { name="bcmaps"; version="1.2.0"; sha256="1n23imq7ksini97fy47070bds87yb0gsplzca0qyknr97igfflx7"; depends=[bcdata httr jsonlite lifecycle progress rappdirs rlang sf xml2]; }; bcmixed = derive2 { name="bcmixed"; version="0.1.4"; sha256="0am6amk1axfxkxgp9nmfys4fp4snplfncwkzh02im7a6zr3v1m63"; depends=[MASS nlme]; }; bcp = derive2 { name="bcp"; version="4.0.3"; sha256="0vhs89lb2wpanqsljclpvwbjmgdsc3jicws8bzqiqh8mbs3nzpxy"; depends=[Rcpp RcppArmadillo]; }; bcpa = derive2 { name="bcpa"; version="1.3.2"; sha256="09n4grdz3vvm3744bggxv9qvnjbifh1hj31sc6s7a3189d1zhl4v"; depends=[plyr Rcpp]; }; bcputility = derive2 { name="bcputility"; version="0.4.0"; sha256="04c53vm920ipn6vwvvncl9bhk4qypng16v1cf1yr8zgs9cyzrlz6"; depends=[data_table sf]; }; bcrm = derive2 { name="bcrm"; version="0.5.4"; sha256="1j8bfa3x7h77vs41k4nqbqlb961szp1fkhc181wzb3zpbnzmjhhy"; depends=[ggplot2 knitr mvtnorm rlang]; }; bcrypt = derive2 { name="bcrypt"; version="1.1"; sha256="1wwdin8x09y8n8zrwj1ylh5ikcz0v0la4wmrsvbdr61cg336wzx4"; depends=[openssl]; }; + bcv = derive2 { name="bcv"; version="1.0.2"; sha256="1fs7pj8lsn96cr1r5bagp9mq869q3pj9k71r7j1xi0i5l06pz90y"; depends=[]; }; bdDwC = derive2 { name="bdDwC"; version="0.1.15"; sha256="0yraq8a0wgz12rzi2dx0gdcz5rx99qd2pzw972wjqyq3rs41pwx0"; depends=[shiny shinyBS shinydashboard shinyFiles shinyjs]; }; - bda = derive2 { name="bda"; version="15.2.5"; sha256="19m7xrsckw0lncmi0qsmy194f2c9lmi1vac37h9jfvkb3i30fx20"; depends=[boot]; }; bdc = derive2 { name="bdc"; version="1.1.4"; sha256="1z79bsg0jz5ffl47sjgxj2bigyhbn76m0kz9sqbzkph7srcc6vpr"; depends=[CoordinateCleaner dplyr DT foreach fs ggplot2 here magrittr purrr qs readr rgnparser rnaturalearth sf stringdist stringi stringr taxadb tibble tidyselect]; }; bdchecks = derive2 { name="bdchecks"; version="0.1.7"; sha256="1pzsvn1m1f9bdmhxmh57pvn9jm4z41rkvv6h60hq2lfgkapnjy7q"; depends=[bdDwC data_table DT finch knitr rgbif shiny shinyBS shinydashboard shinyjs spocc yaml]; }; bdclean = derive2 { name="bdclean"; version="0.1.15"; sha256="14cy8yaqd6bg2zyh2wvndydk9sigaydavxl4cfypqz5kqdhj82z9"; depends=[bdchecks bdDwC data_table DT finch knitr leaflet rgbif rmarkdown shiny shinydashboard shinyjs spocc]; }; @@ -6479,7 +6562,6 @@ in with self; { bdsmatrix = derive2 { name="bdsmatrix"; version="1.3-6"; sha256="1g300x11rv56f826mbv7mbb67a5xz3dv74hpjc18jh3q8gap3j7r"; depends=[]; }; bdvis = derive2 { name="bdvis"; version="0.2.33"; sha256="0gcc41pbvx245pcdrm9wxn3clg0iczpqvgrhzmy8c0dz2jfbzc9j"; depends=[chron ggplot2 lattice maps plotrix plyr rgdal sqldf taxize treemap]; }; bea_R = derive2 { name="bea.R"; version="1.0.6"; sha256="15pdbwz7av8862bl144n998qk0w9rqwip9m2brdm5hj7id5xdlif"; depends=[chron colorspace data_table DT ggplot2 googleVis gtable htmltools htmlwidgets httpuv httr jsonlite magrittr munsell plyr Rcpp scales shiny shinydashboard stringi stringr xtable yaml]; }; - beadplexr = derive2 { name="beadplexr"; version="0.4.1"; sha256="1n37qk4p2kgcrb2w4xmgnrgibjv0pdmlzd1y0c1z6njszg2livgz"; depends=[cluster dplyr drc fpc ggplot2 magrittr mclust purrr raster rlang tibble tidyr yaml]; }; beakr = derive2 { name="beakr"; version="0.4.3"; sha256="0l6475l5d58g5ahz4b3vrdlvl656p2rasni17gz4y1l2rd0pvvh4"; depends=[base64enc httpuv jsonlite magrittr mime R6 stringr webutils]; }; beam = derive2 { name="beam"; version="2.0.2"; sha256="17c7zww1160jxm0q6vb5h59zipjjfyc3pls30y5v4vyk7kr9rdvx"; depends=[assertthat BH fdrtool igraph knitr Matrix Rcpp RcppArmadillo]; }; beanplot = derive2 { name="beanplot"; version="1.3.1"; sha256="1b8mvlcsv5l9g08ag92hndsvk8jmgxvznhzgazc8y4296kp8l5a9"; depends=[]; }; @@ -6500,7 +6582,7 @@ in with self; { belex = derive2 { name="belex"; version="0.1.0"; sha256="1563yngc1lvncmx3h6kgsj1r6k3hvxidh6h9rb7apxs2rq5k32ms"; depends=[XML]; }; belg = derive2 { name="belg"; version="1.5.3"; sha256="12yfqzz98c4377xjqw9biq83mp8gb009xy4fnnsgxrqb8d4r6i2i"; depends=[Rcpp RcppArmadillo]; }; bellreg = derive2 { name="bellreg"; version="0.0.1"; sha256="17a0ac5ab9yblkl3cwv9vf1l6s027r34n4lqw9fs8bfs1inxbn9p"; depends=[BH extraDistr Formula magic MASS numbers Rcpp RcppEigen Rdpack rstan rstantools StanHeaders]; }; - bench = derive2 { name="bench"; version="1.1.2"; sha256="16s3qa70bvfd692c0agvi27hp09b07qrzrz6jy2yd7xpimv0m4dg"; depends=[glue pillar profmem rlang tibble]; }; + bench = derive2 { name="bench"; version="1.1.3"; sha256="05zky7l6103gabv9y0g3qlx8sgkq1sn9yl9jd3x8834cmlh67bmz"; depends=[glue pillar profmem rlang tibble]; }; benchmarkme = derive2 { name="benchmarkme"; version="1.0.8"; sha256="0qaz8wy3n08k9lr8qljk5i8z8db18scbdc8m734aymd307h00w8x"; depends=[benchmarkmeData doParallel dplyr foreach httr Matrix stringr tibble]; }; benchmarkmeData = derive2 { name="benchmarkmeData"; version="1.0.4"; sha256="1n4vjkagqlm6kw2hilf4gjfcdjad0bcg652j9nl2ygbq3kdnh1vf"; depends=[dplyr tibble]; }; benchr = derive2 { name="benchr"; version="0.2.5"; sha256="1xh1n41ll50zz3v26i8lg5f92i90rc78ywnl0rczryh621whx80n"; depends=[Rcpp RcppProgress]; }; @@ -6509,16 +6591,17 @@ in with self; { benford_analysis = derive2 { name="benford.analysis"; version="0.1.5"; sha256="0y0c7l2r9s7lg9bw4ndcqwisa5l6a2cpydn1vmz88h3yva0l68cg"; depends=[data_table]; }; bentcableAR = derive2 { name="bentcableAR"; version="0.3.1"; sha256="1d65xaqz0v2wjm6nxl0lyzjynrgizdvzpj2cqa0nhlczcg6xi62r"; depends=[]; }; benthos = derive2 { name="benthos"; version="1.3-8"; sha256="0pznxnf4wl47wc926diaf4h6x12grc9vxbzd8d4d5j18dp3wvr5z"; depends=[dplyr lazyeval readr]; }; - berryFunctions = derive2 { name="berryFunctions"; version="1.21.14"; sha256="1dzhkg5gl5sjwd6hv6gn5arr88r8jz5qz6d5cmbk4cxi0ld8v84i"; depends=[abind]; }; + berryFunctions = derive2 { name="berryFunctions"; version="1.22.0"; sha256="166lx47z4m5spi4yapsda18mwg30z2gx9cdhvshzgr788vbpi1cd"; depends=[abind]; }; bestNormalize = derive2 { name="bestNormalize"; version="1.9.0"; sha256="0kz03bawq45ff3vibhnfq1fq2xs7snx9qw2jaw7a7ma57svbr3gd"; depends=[butcher doParallel doRNG dplyr foreach generics LambertW nortest purrr recipes tibble]; }; bestSDP = derive2 { name="bestSDP"; version="0.1.2"; sha256="1rff6jij9wmlpalzilvid8jvj2pczrchx0yrg0vhy00j64zg6jzs"; depends=[dplyr DT ggplot2 readxl rlist shiny shinyBS shinydashboard shinyjs shinythemes shinyWidgets stringr tidyr]; }; bestglm = derive2 { name="bestglm"; version="0.37.3"; sha256="1zncy958hlwyyxrp6yvq1inq6mpyrbr6cdkf8maijfirr5j8f0ya"; depends=[glmnet grpreg lattice leaps pls]; }; - besthr = derive2 { name="besthr"; version="0.3.1"; sha256="0vqli7dbgv176d1kz9cn33z8hhzggakqrzf1i0mpsxqmdyc2v03f"; depends=[dplyr ggplot2 ggridges magrittr patchwork rlang stringr tibble]; }; + besthr = derive2 { name="besthr"; version="0.3.2"; sha256="0mg1nm014p82n9v5f929rcrpqclqs5kh8hga8gd7h29jqykgirc0"; depends=[dplyr ggplot2 ggridges magrittr patchwork rlang stringr tibble]; }; bestridge = derive2 { name="bestridge"; version="1.0.7"; sha256="10nlk1vrzmgxfia9b3skmg5594ab5s3d64k2awyxybkz2pzz7gb1"; depends=[MASS Matrix pheatmap Rcpp RcppEigen survival]; }; betaBayes = derive2 { name="betaBayes"; version="1.0.1"; sha256="1a7ng6ym47scgj47frrhs76r6ipq6mhgf3ivbg2npqpg7hjcz2ci"; depends=[betareg Rcpp RcppArmadillo]; }; - betaDelta = derive2 { name="betaDelta"; version="1.0.0"; sha256="1kl76z4bkas52fxch4vw0kab5am4y4m8kv9xsii710pglngz1ahg"; depends=[]; }; - betaMC = derive2 { name="betaMC"; version="1.0.0"; sha256="01vig8mnizgxb0xh0a9aywmjfpii6xqfyy19hj0ngsksafbvydf0"; depends=[]; }; - betaSandwich = derive2 { name="betaSandwich"; version="1.0.3"; sha256="0n6wvyl89xcy8w8vvcgk7y4h0i1ph8ixmn9mnib5dbp3whjs3ckr"; depends=[]; }; + betaDelta = derive2 { name="betaDelta"; version="1.0.1"; sha256="0rkahsr7xmq5g68v5k6pcfnbsrwavibs89kiriizdksvijkny11k"; depends=[]; }; + betaMC = derive2 { name="betaMC"; version="1.2.0"; sha256="0b3pbblv9gz7577kd4027bgnw74scmn7i42p9fivv0kzw475s82a"; depends=[]; }; + betaNB = derive2 { name="betaNB"; version="1.0.1"; sha256="0p26k1cp78xb7w267x4aawa6y626cz39n2sgwf8jk18xlgar88pn"; depends=[]; }; + betaSandwich = derive2 { name="betaSandwich"; version="1.0.4"; sha256="0fp010if9wxwjpzzprdzapsafzhcvxckd58sxhwzwnym0bmh9lr0"; depends=[]; }; betacal = derive2 { name="betacal"; version="0.1.0"; sha256="19wgpgf9yhckl9qx9v24f4yh055wfalphcxwm7lg68px6ap2pxl9"; depends=[]; }; betaclust = derive2 { name="betaclust"; version="1.0.0"; sha256="1h3fcvs22spxhphcfg7zl75cpa5yycyl2yy0bgyy0hwkwh8cwpza"; depends=[doParallel foreach ggplot2 plotly scales]; }; betafunctions = derive2 { name="betafunctions"; version="1.8.1"; sha256="0xvg5d04icsb0v9f7gnvpw345sik8xla5p55cdpbm8c3wwfk1d1m"; depends=[]; }; @@ -6540,9 +6623,10 @@ in with self; { bggum = derive2 { name="bggum"; version="1.0.2"; sha256="04vr9z81awavkhk3lbi8yasmi242lrbnq0pzqp38xlrn5xkf8b1w"; depends=[Rcpp RcppDist]; }; bgmfiles = derive2 { name="bgmfiles"; version="0.0.6"; sha256="10qldfjjq5fx5jrrakdxc8k2pf0vp8ifg18nq56lvx9n28mqigim"; depends=[]; }; bgmm = derive2 { name="bgmm"; version="1.8.5"; sha256="1qng8zlpm5pp2ilny99gxyppmp5dnrada4kmvpyg2ap06i69a9gs"; depends=[car combinat lattice mvtnorm]; }; + bgms = derive2 { name="bgms"; version="0.1.0"; sha256="0z3lj0phlx3agsr797fdnr6g4flrcln2b5rqv6m1w7gdghlffzpb"; depends=[Rcpp RcppProgress Rdpack]; }; bgsmtr = derive2 { name="bgsmtr"; version="0.7"; sha256="17706qims9637ppwg0vszkcm6kmvhzyrdihkgigpiv5lknhk2q3m"; depends=[CholWishart coda EDISON glmnet inline LaplacesDemon Matrix matrixcalc miscTools mnormt mvtnorm Rcpp sparseMVN statmod]; }; bgumbel = derive2 { name="bgumbel"; version="0.0.3"; sha256="18k8dy44x49hr4s37hjrq60c3cbw0slc9gjmd8gwcbz4slix2ydk"; depends=[coda MASS MCMCpack quantreg SparseM]; }; - bgw = derive2 { name="bgw"; version="0.1.0"; sha256="044rn881948y5b3dy6dxqx3i9vny81qpv594ndaapy1himb0lipa"; depends=[]; }; + bgw = derive2 { name="bgw"; version="0.1.1"; sha256="1wwiwgvkhpwd4psb0mbyj18vgz85wljaphqvi2zf7dgz82drqksq"; depends=[]; }; bhm = derive2 { name="bhm"; version="1.18"; sha256="05gr5qmd6dzfylay60wazi0iyvj9r0xhzdk7jm7wrsrag7i43z1p"; depends=[coda ggplot2 MASS survival]; }; bhmbasket = derive2 { name="bhmbasket"; version="0.9.5"; sha256="1mcgbvlnrmxlxqcjmc7ij7qn3zqfwsmbx2r2facbqrf043hmiipc"; depends=[doRNG foreach R2jags]; }; bhpm = derive2 { name="bhpm"; version="1.7"; sha256="0fhk2gmghibf7la864dzm19bm76525gzbj03vw0y0zwbv9shbpcp"; depends=[coda]; }; @@ -6554,14 +6638,14 @@ in with self; { biblionetwork = derive2 { name="biblionetwork"; version="0.1.0"; sha256="0nhx9bk7r5l0bvj98clnmwf53ihghf48zai4nj6pcgr2rb69fvjj"; depends=[data_table Rdpack]; }; bibs = derive2 { name="bibs"; version="1.1.1"; sha256="0slxqhcm4fhdmr2dj1c31zs8sgl39267179nbc59jlpb0z77z2d6"; depends=[GIGrvg]; }; bibtex = derive2 { name="bibtex"; version="0.5.1"; sha256="1l9y945qmpla68rx6dnaxc83vmvkw26cw4zzfgfsvi36wsja1hgk"; depends=[backports]; }; - biclust = derive2 { name="biclust"; version="2.0.3"; sha256="0lgyc2f04dhr65cwga78pradxsdzgjrpp8vphchqn60ab1z95dlp"; depends=[additivityTests colorspace flexclust ggplot2 lattice MASS tidyr]; }; + biclust = derive2 { name="biclust"; version="2.0.3.1"; sha256="11fcb6z5lzz6yl8hsa8ppr53i8yn8k4m19k55ynznhkw780184c7"; depends=[additivityTests colorspace flexclust ggplot2 lattice MASS tidyr]; }; biclustermd = derive2 { name="biclustermd"; version="0.2.3"; sha256="1knhz96k5giq3d16i3akl5gbxrzx3vxm97cb3ivaw835fr9zrmr5"; depends=[biclust doParallel dplyr foreach ggplot2 magrittr nycflights13 phyclust tidyr]; }; bidask = derive2 { name="bidask"; version="1.0.0"; sha256="1f5i95bbwb2svx2gcj559x9vydwbaqba2slzsx1w4l9sfm2j79wr"; depends=[xts zoo]; }; bife = derive2 { name="bife"; version="0.7.2"; sha256="0xikxniwzcv6jc64rgx39hddqchxk6c43h45algssbz2vaxvc4zg"; depends=[data_table Formula Rcpp RcppArmadillo]; }; bifurcatingr = derive2 { name="bifurcatingr"; version="1.0.0"; sha256="0msbdr2m4xmvnd00yklk2b8c8qwr11d5gc1x22sqd16fgj9y0qvf"; depends=[igraph MASS]; }; bigD = derive2 { name="bigD"; version="0.2.0"; sha256="0pzzqqazn1nv2b613vzdyhxvr454lyqq8235jydia6r3k86fpadw"; depends=[]; }; bigDM = derive2 { name="bigDM"; version="0.5.1"; sha256="1ffc9gkkp5cq5gxs14vqx0n5c34bv12rc81ls8pklvz8w0q392fh"; depends=[crayon fastDummies future future_apply MASS Matrix RColorBrewer Rdpack rlist sf spatialreg spdep]; }; - bigGP = derive2 { name="bigGP"; version="0.1-7"; sha256="0slg87g6lrdlzlcqxmcyxcwzrnmiz6ps0n14p27zcv0n687xifid"; depends=[Rmpi]; }; + bigGP = derive2 { name="bigGP"; version="0.1.8"; sha256="0awsskpdky56llqc7flgwzs6646cvvn8q50x8gj0hkknfm8fs1rz"; depends=[Rmpi]; }; bigMap = derive2 { name="bigMap"; version="2.3.1"; sha256="08c9s5sk672j70d6pnva7z52i4s3knkby06lva9al9n8a3jiwsvz"; depends=[BH bigmemory colorspace RColorBrewer Rcpp RcppArmadillo]; }; bigQF = derive2 { name="bigQF"; version="1.6"; sha256="01qr1cw5v330kkddmgwk4fdlm6msnqcbx1kfzw390yfwq5pr84sy"; depends=[CompQuadForm coxme Matrix svd]; }; bigQueryR = derive2 { name="bigQueryR"; version="0.5.0"; sha256="051c8rkj77dm78237dzhf3lcdawv0xv72pwfiim9bi89z9mp6f9m"; depends=[assertthat googleAuthR googleCloudStorageR httr jsonlite]; }; @@ -6581,15 +6665,16 @@ in with self; { bigmds = derive2 { name="bigmds"; version="2.0.1"; sha256="05sph85z4c4fiwd429hx9chgd7rsn48irr168yy1dj9daaqm49pl"; depends=[]; }; bigmemory = derive2 { name="bigmemory"; version="4.6.1"; sha256="0hainqkm7cs8gjm42vkpdrr0284smsbwdfackp34yv7dhxy1avmm"; depends=[BH bigmemory_sri Rcpp uuid]; }; bigmemory_sri = derive2 { name="bigmemory.sri"; version="0.1.6"; sha256="03468ak0lgd9m0f7synxms2zzr8f7n2nm1gmhcraj3nfcv4nmyiv"; depends=[]; }; - bignum = derive2 { name="bignum"; version="0.3.1"; sha256="0a0hqsdh6mpkkqkdv7dhijbwnk6q200z0s6xnaa9mp23ih30pksq"; depends=[BH cpp11 rlang vctrs]; }; + bignum = derive2 { name="bignum"; version="0.3.2"; sha256="0v2hiw9kirm78fcqbm2hzrqcvndgcslz9j8gmzba1d5xaivanhkj"; depends=[BH cpp11 rlang vctrs]; }; bigparallelr = derive2 { name="bigparallelr"; version="0.3.2"; sha256="14rkcig4j93c231sfm43331ykmvxjx2fiz5nhblj2rfzkxli4css"; depends=[bigassertr doParallel flock foreach parallelly RhpcBLASctl]; }; bigreadr = derive2 { name="bigreadr"; version="0.2.5"; sha256="15wy5rphk2l59k8fk68a15xsvy8nxj1srnc2c86i7y5ym04a856k"; depends=[bigassertr data_table parallelly Rcpp]; }; - bigrquery = derive2 { name="bigrquery"; version="1.4.1"; sha256="1rcz1zq0azrrchhxz4b0g4m9c3ymp4pasi7ji1nvx25w5x41sdmv"; depends=[assertthat bit64 brio curl DBI gargle glue httr jsonlite lifecycle prettyunits progress rapidjsonr Rcpp rlang tibble]; }; + bigrquery = derive2 { name="bigrquery"; version="1.4.2"; sha256="1rw0w4bmqs1v8xjg787n6dsk5dmizgvjg9wrky38s7a7zsvlryri"; depends=[assertthat bit64 brio cli curl DBI gargle glue httr jsonlite lifecycle prettyunits progress rapidjsonr Rcpp rlang tibble withr]; }; bigsimr = derive2 { name="bigsimr"; version="0.11.2"; sha256="1mygsc865hki6z2bilvbnymk8r4p73ams7iah9qpqi0ap6cqqz8p"; depends=[JuliaCall]; }; bigsnpr = derive2 { name="bigsnpr"; version="1.12.2"; sha256="1xl7456xnid6pvvcppm4297vmgln7f4n15ziz0yfp5i5mqlmafj4"; depends=[bigassertr bigparallelr bigreadr bigsparser bigstatsr bigutilsr data_table doRNG foreach ggplot2 magrittr Matrix Rcpp RcppArmadillo rmio roptim runonce vctrs]; }; bigsparser = derive2 { name="bigsparser"; version="0.6.1"; sha256="0b6hh1rvi7qnz9kfnckjglcv240inpnc5f50cyrpfq5gdyppzhy1"; depends=[bigassertr Matrix Rcpp RcppEigen rmio]; }; bigsplines = derive2 { name="bigsplines"; version="1.1-1"; sha256="1kf04p2lglzdi1fdryk27nmj2a2jca2ii7ki8vak93sq21isb179"; depends=[quadprog]; }; bigstatsr = derive2 { name="bigstatsr"; version="1.5.12"; sha256="1wj169j91yjlb12dzy80q7rvi102l7fhlzfvc93rxifq2w3px9x8"; depends=[bigassertr bigparallelr cowplot foreach ggplot2 ps Rcpp RcppArmadillo rmio RSpectra tibble]; }; + bigstep = derive2 { name="bigstep"; version="1.1.1"; sha256="1bppvib57p6m91c2v9w9lgb1k3jg8mk3w2kkbjvwgsdwy4m8fhap"; depends=[bigmemory magrittr matrixStats R_utils RcppEigen speedglm]; }; bigtabulate = derive2 { name="bigtabulate"; version="1.1.9"; sha256="0ws73fasmwsjbv5l63iln164ai7n3dy6wwpm8vqkpys7wl1i3xxy"; depends=[BH biganalytics bigmemory Rcpp]; }; bigtcr = derive2 { name="bigtcr"; version="1.1"; sha256="1l03yc28afdm7glbw4ay0zsywjgqg5l90qz1hfhslsy8gg7d5wq5"; depends=[]; }; bigtime = derive2 { name="bigtime"; version="0.2.1"; sha256="08vgi0q194sjg5arhfp3nahv11ry5phj9j1w9a5y35xm3ds8acyg"; depends=[corrplot dplyr ggplot2 magrittr Rcpp RcppArmadillo RcppEigen tidyr]; }; @@ -6599,7 +6684,7 @@ in with self; { bild = derive2 { name="bild"; version="1.2-0"; sha256="0aygx77fn2w249q6ghpxclhm9xb2ngdzrirldr3lpidg6ivc443v"; depends=[]; }; billboard = derive2 { name="billboard"; version="0.1.0"; sha256="1z3y8dijhc1381y91n5zq305xzm1gpvs0g4mdpfr7zrblpa8ws39"; depends=[tibble]; }; billboarder = derive2 { name="billboarder"; version="0.4.0"; sha256="1llac7fyyfax6q8n9b8lccyl9c8vxqvkfp341sz59mrw8yhwb2hr"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr rlang scales shiny]; }; - bimets = derive2 { name="bimets"; version="2.3.0"; sha256="1iqmkspclhvvwxkhn88c4vmwf1lc8zn4sv4r349fx7qkq2hpr8z1"; depends=[xts zoo]; }; + bimets = derive2 { name="bimets"; version="3.0.1"; sha256="03g0vkmg1lcpc6v3a4apj13920iv4lrbag3q0xih0b5d5479yr57"; depends=[xts zoo]; }; binGroup = derive2 { name="binGroup"; version="2.2-1"; sha256="0cb7j6b0s3y56mv1967awwri0kv0rf3sr3vwf9gc2zbjggxi9ffp"; depends=[partitions Rdpack]; }; binGroup2 = derive2 { name="binGroup2"; version="1.2.4"; sha256="1qq04i8fji8mp763afxrqlradfdxlzd3ph5d18dabfj813yxx6kz"; depends=[ggplot2 partitions rBeta2009 Rcpp RcppArmadillo Rdpack scales]; }; binMto = derive2 { name="binMto"; version="0.0-7"; sha256="0rg9rsdy14jx7zjv60krcz1vh0sxqimsai0wynhx2sx0kydw4ngy"; depends=[mvtnorm]; }; @@ -6637,6 +6722,7 @@ in with self; { bioOED = derive2 { name="bioOED"; version="0.2.1"; sha256="0wx58bngpzlrbbcnx8l1lqhsg51y98wcym1238p87drf64x2mj1n"; depends=[bioinactivation corrplot dplyr FME ggplot2 MEIGOR rlang tidyr tidyselect tidyverse]; }; bioPN = derive2 { name="bioPN"; version="1.2.0"; sha256="0mvqgsfc7d4h6npgg728chyp5jcsf49xhnq8cgjxfzmdayr1fwr8"; depends=[]; }; bioRad = derive2 { name="bioRad"; version="0.6.2"; sha256="0rqdcbf37r4m5ig9gp1njx4bbjc7n96fmz5vc6mif0z81kdcrzs8"; depends=[assertthat aws_s3 curl data_table fields ggmap ggplot2 glue lubridate lutz maptools raster rgdal rhdf5 sp tidyr viridis viridisLite]; }; + bioSNR = derive2 { name="bioSNR"; version="1.0"; sha256="19blfbw9d0did76llgffs8dyld8yr6wf4rmxmr2fb4vp1s8m2izc"; depends=[dplyr ggplot2 pracma scales]; }; bioacoustics = derive2 { name="bioacoustics"; version="0.2.8"; sha256="08qhxx7xgswjamrgg82pkg1f7w50dx9ln67d50n1p3rvrxab4061"; depends=[htmltools moments Rcpp stringr tuneR]; }; bioassays = derive2 { name="bioassays"; version="1.0.1"; sha256="1y32wxkv14l7r0f35y4hxxxh3zpw2gd4hsjmkajhmzmnvg5jdw78"; depends=[dplyr ggplot2 magrittr nplr reshape2 rlang]; }; bioclim = derive2 { name="bioclim"; version="0.3.0"; sha256="1qiz7bwy44xlgj52cy46bg762fg3llgzzn9a2bclyx42v12z8p6q"; depends=[berryFunctions ggplot2 reshape2 rmarkdown terra]; }; @@ -6649,12 +6735,12 @@ in with self; { biogrowth = derive2 { name="biogrowth"; version="1.0.2"; sha256="04k89fnfc85wiq09b5cff4k4yvhi8h87nzscig1lcznxxwljyi3j"; depends=[cowplot deSolve dplyr FME formula_tools ggplot2 lamW lifecycle MASS purrr rlang tibble tidyr]; }; bioimagetools = derive2 { name="bioimagetools"; version="1.1.8"; sha256="1b7nxjis0p1hiv3w0cr3cyc2xz6sn9qbpssvlp2d7c5gm8x2gnj7"; depends=[EBImage httr tiff]; }; bioinactivation = derive2 { name="bioinactivation"; version="1.2.3"; sha256="0gz1bbakf6b23jsbvrr8314yxajxcr1akm5srgm883lrf1p5ax13"; depends=[deSolve dplyr FME ggplot2 lazyeval MASS purrr rlang]; }; - biokNN = derive2 { name="biokNN"; version="0.1.0"; sha256="113lynbxmv88ycvbsq9drn2f75md7yajhicfw8qd8l6lawiq1fqc"; depends=[cluster desc dplyr ggplot2 lme4 magrittr mice mitml tidyr]; }; biolink = derive2 { name="biolink"; version="0.1.7"; sha256="1i9aisvb3lvljird89fy9fx7h3s1wi6dpilycbynqyhz8xqnnszj"; depends=[DBI glue memoise rentrez RMySQL xml2]; }; - biomartr = derive2 { name="biomartr"; version="1.0.2"; sha256="0hr7wks88lbfcqzjzm4x265dk4lpmc3i2ndp7xcrx8ssj76wrmkz"; depends=[biomaRt Biostrings curl data_table downloader dplyr fs httr jsonlite philentropy purrr R_utils RCurl readr stringr tibble withr XML]; }; + biomartr = derive2 { name="biomartr"; version="1.0.3"; sha256="093v32r6s9sn7yisa4fdwgjif313ap19nvq0sbsgj2482k646d55"; depends=[biomaRt Biostrings curl data_table downloader dplyr fs httr jsonlite philentropy purrr R_utils RCurl readr stringr tibble withr XML]; }; biometryassist = derive2 { name="biometryassist"; version="1.1.2"; sha256="176j3qvvhg9qj87zqzxyc95npjwrv346lsa8f0plgp0llk9ka8vj"; depends=[agricolae cowplot curl farver ggplot2 lattice multcompView pracma predictmeans rlang scales stringi withr]; }; - biomod2 = derive2 { name="biomod2"; version="4.2-2"; sha256="06i30m3rv0ifbmdjcczma8nxakgyksf8g9jp1z2lmfl92n0n7s4v"; depends=[abind data_table dplyr earth foreach gbm ggplot2 MASS maxnet mda nnet PresenceAbsence pROC randomForest reshape reshape2 rpart sp terra]; }; + biomod2 = derive2 { name="biomod2"; version="4.2-3"; sha256="04kzxzzacan59xbqznhykj22i80kdb9710ynvw5c5qfb2c1lqnvp"; depends=[abind dplyr earth foreach gbm ggplot2 MASS maxnet mda nnet PresenceAbsence pROC randomForest reshape reshape2 rpart sp terra]; }; bionetdata = derive2 { name="bionetdata"; version="1.1"; sha256="14ll1m85pcr0xycczk1y9jxiqxfy5daiigfhqn4f6sfk2afy07yr"; depends=[]; }; + bioregion = derive2 { name="bioregion"; version="1.0.0"; sha256="0miajh5m6hmk5jwpaad8z2psib0x0bk94dyyhxyipzn9hf1hijqb"; depends=[ape bipartite cluster data_table dbscan dynamicTreeCut fastcluster ggplot2 igraph mathjaxr Matrix Rcpp Rdpack rlang rmarkdown segmented sf tidyr]; }; bios2mds = derive2 { name="bios2mds"; version="1.2.3"; sha256="1k0r3fnkzfczx3wp3m8zpndk6gxca7idsp0z13rw84zjrgqaw6jm"; depends=[amap cluster e1071 rgl scales]; }; biosensors_usc = derive2 { name="biosensors.usc"; version="1.0"; sha256="076isyk7dfjpi5db7ghk0hmz2kkdgmrnj3g9ffdnim5gxq3zsf1h"; depends=[energy fda_usc osqp parallelDist Rcpp RcppArmadillo truncnorm]; }; bioseq = derive2 { name="bioseq"; version="0.1.4"; sha256="0m93s7vrpd392w2mcv3sdf5kcmpn1671ksplx1fiz7wdakck9fxq"; depends=[ape crayon dplyr pillar readr rlang stringdist stringi stringr tibble vctrs]; }; @@ -6689,14 +6775,14 @@ in with self; { biwavelet = derive2 { name="biwavelet"; version="0.20.21"; sha256="0v7arwmng2i22svj836i57q8by9x5pghjv7d35g7r35wakrm8jyx"; depends=[fields foreach Rcpp]; }; biwt = derive2 { name="biwt"; version="1.0.1"; sha256="0gg381jhwdc0kc8v0yn7wcgjkpn8dfnnn20m5ycjv66jlk2jhdcw"; depends=[MASS robustbase]; }; bizdays = derive2 { name="bizdays"; version="1.0.13"; sha256="0qbkcryvap7ilv7pwv56liz3cgdhhk0cc8mxhw5bs29qnnjrl38f"; depends=[jsonlite]; }; - bizicount = derive2 { name="bizicount"; version="1.3.1"; sha256="10vxwysgi74dy2ypwhilrk7dd9p2iy0i0v6wabginb5w9009kz4b"; depends=[DHARMa Formula MASS numDeriv pbivnorm rlang texreg]; }; - bjscrapeR = derive2 { name="bjscrapeR"; version="0.1.0"; sha256="18chbgiwify272iqf0w4vsqh73wbk12d8m2awc5hbnfqblz3phwd"; depends=[dplyr glue readr tibble]; }; + bizicount = derive2 { name="bizicount"; version="1.3.2"; sha256="10h99fzaa7b8wyzrpjkzqnn93f48sy1s9nhpw5l971mr2qss2zzz"; depends=[DHARMa Formula MASS numDeriv pbivnorm rlang texreg]; }; bkmr = derive2 { name="bkmr"; version="0.2.2"; sha256="1bzr39a53p1xkq2fi2fphv2rpsml2z25xb1ycs63p3y7qis9zlky"; depends=[dplyr fields magrittr MASS nlme tibble tidyr tmvtnorm truncnorm]; }; bkmrhat = derive2 { name="bkmrhat"; version="1.1.3"; sha256="0l575dav5wyia37vm5j1dyljgk0k6l1hwfwsqr2gq3sb0iim4my4"; depends=[bkmr coda data_table future rstan]; }; - blackbox = derive2 { name="blackbox"; version="1.1.32"; sha256="180y19ls0vdk98smhs9hxpcwg3hwpl62d19zdiml38bjlxmr0kav"; depends=[foreach geometry lattice MASS nloptr numDeriv pbapply proxy rcdd Rcpp RcppEigen spaMM]; }; + blackbox = derive2 { name="blackbox"; version="1.1.43"; sha256="0q543vz4alg8i1ckh3w029gj9x8dminnq9l92d165w73r8adnalq"; depends=[foreach geometry lattice MASS matrixStats nloptr numDeriv pbapply proxy rcdd Rcpp RcppEigen spaMM]; }; blaise = derive2 { name="blaise"; version="1.3.9"; sha256="0jz49iblkmn7cl81r8q53kqq994l03hrccpqichbsp1cvlwrn5jd"; depends=[dplyr readr stringr tibble]; }; blandr = derive2 { name="blandr"; version="0.5.1"; sha256="1rqas71hlf000b3z824d8ljshf8bx91bbrzaxxnx5n3chv19w6z6"; depends=[ggplot2 jmvcore knitr R6 rmarkdown stringr]; }; blapsr = derive2 { name="blapsr"; version="0.6.1"; sha256="1vycwglrpb0d041xj3dza25am16ac80r93si8x45b5ry0aq38c46"; depends=[coda MASS Matrix RSpectra sn survival]; }; + blaster = derive2 { name="blaster"; version="1.0.6"; sha256="0a8481swn0c72q5vqb3zzki7xxd1bns2b606flcc5brvqh1jaqq4"; depends=[Rcpp]; }; blastula = derive2 { name="blastula"; version="0.3.3"; sha256="0n7cfz6m9wi7jdw8r093vmhld3q669drm9v59740dsan9s1kqq5i"; depends=[base64enc commonmark curl digest dplyr fs getPass here htmltools httr jsonlite magrittr mime rlang rmarkdown stringr uuid]; }; blatent = derive2 { name="blatent"; version="0.1.1"; sha256="1jnf3i7s3mn99ff8yzygxys0w8qf6vrfk16iqgxh7jbivbrczysk"; depends=[coda Matrix mnormt R6 Rcpp RcppArmadillo truncnorm]; }; blavaan = derive2 { name="blavaan"; version="0.4-7"; sha256="1hq863d64sq2p1c6911n5nl40sw156vh6b6fizwkrzzsl5j74ms3"; depends=[bayesplot BH coda future_apply lavaan loo Matrix mnormt nonnest2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tmvnsim]; }; @@ -6710,7 +6796,7 @@ in with self; { blme = derive2 { name="blme"; version="1.0-5"; sha256="0413j7gwr5yj14jamkizj55q7xii1a0kgazzj0ilqn2ascclz6k7"; depends=[lme4]; }; blmeco = derive2 { name="blmeco"; version="1.4"; sha256="1370djpy87816bfr0g8730x7q4d4xx9aa41iqm622q5b5zm2jzmp"; depends=[arm lme4 MASS]; }; blob = derive2 { name="blob"; version="1.2.4"; sha256="13vjy9f3zki8w1damz6kqq47689mk4l1navnwh7r6z8lqkmj52fh"; depends=[rlang vctrs]; }; - blockCV = derive2 { name="blockCV"; version="3.0-0"; sha256="0p5i9b0wg08zv94h4anmb30whdi7awxvwlhb78alyv15y03x7mxh"; depends=[Rcpp sf]; }; + blockCV = derive2 { name="blockCV"; version="3.1-2"; sha256="07asa9w5yfz9v44lxm1qcx87wd9zy2ycpsdbdf7bx3lc997w83ag"; depends=[Rcpp sf]; }; blockForest = derive2 { name="blockForest"; version="0.2.6"; sha256="1i5vqs0hh3yc82hl8bsa647plcv0c4c95b1wzdzyslxz2m5khw0l"; depends=[Matrix Rcpp RcppEigen survival]; }; blockTools = derive2 { name="blockTools"; version="0.6.4"; sha256="0372ca7mgzz6j0gp2yn2mjpj0kq01jg3pyhd33s65srap2n0wg0d"; depends=[dplyr MASS tibble]; }; blockcluster = derive2 { name="blockcluster"; version="4.5.3"; sha256="09f3b8q0vz2184njsisr0h5j6l96cm0kcrvn9xw077xg5y4vif0i"; depends=[Rcpp rtkore]; }; @@ -6721,7 +6807,7 @@ in with self; { blockrand = derive2 { name="blockrand"; version="1.5"; sha256="0bic3b8l7mp2hpwd8k1diwy6a4lj92i7s5k20i2wy8kw0c74jwfh"; depends=[]; }; blocksdesign = derive2 { name="blocksdesign"; version="4.9"; sha256="1kr3fxs8vgc96clhx5ml11jkwll1rg9gf16xg93q14jpg4hg0j9h"; depends=[plyr PolynomF]; }; blocs = derive2 { name="blocs"; version="0.1.1"; sha256="084449bigcqc6jfarpb5cvvrhh7a4qghgz3ym9db64zhjrha384x"; depends=[collapse dplyr ggplot2 ks mgcv rlang tibble]; }; - blogdown = derive2 { name="blogdown"; version="1.16"; sha256="15d89ii4ky6daflpv9iw7xrxfswylmj2mijmwysar4h2djs2wpn4"; depends=[bookdown htmltools httpuv jsonlite knitr later rmarkdown servr xfun yaml]; }; + blogdown = derive2 { name="blogdown"; version="1.17"; sha256="1p0qfw9vy2byrliq3n6dn6v10dp35nra036agic6mm9c5sakv7h8"; depends=[bookdown htmltools httpuv jsonlite knitr later rmarkdown servr xfun yaml]; }; blorr = derive2 { name="blorr"; version="0.3.0"; sha256="1ynvg6ar7c7p01225q9czy4gxks0p1vw3sx207l7vzqxw20wb1bn"; depends=[car data_table ggplot2 gridExtra lest Rcpp]; }; blrm = derive2 { name="blrm"; version="1.0-2"; sha256="1lk7s7myxflr9as88944kvg8vn7m2ansg2caizr6h4d3690vr4m7"; depends=[boot mvtnorm openxlsx reshape2 rjags shiny]; }; blsR = derive2 { name="blsR"; version="0.4.0"; sha256="00xip7j9zkv62dkw2gcfiivaws0pri3jijcppb5xyz681k2jqdpz"; depends=[dplyr httr purrr readr rlang stringr]; }; @@ -6736,14 +6822,13 @@ in with self; { bmixture = derive2 { name="bmixture"; version="1.7"; sha256="09ahs2dwrbqhk4aki9291v5lr5fa9mvi087zrqjmv2057ypyv2n5"; depends=[BDgraph]; }; bmlm = derive2 { name="bmlm"; version="1.3.12"; sha256="0lzayz56knc1bj9r985kz91bfcjacs3zzz64b9dgbj0y2l7gd0xa"; depends=[BH ggplot2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; bmp = derive2 { name="bmp"; version="0.3"; sha256="0jd67r11bn98hjwgyr6gas423787xy7ji2hq7ay80blkkcj91xxx"; depends=[]; }; - bmrm = derive2 { name="bmrm"; version="4.1"; sha256="1brdd5mhr5282wkdc62lgsqcxw077p69rknjk7fjcs282ahcik2s"; depends=[LowRankQP lpSolve matrixStats Rcpp]; }; bmscstan = derive2 { name="bmscstan"; version="1.2.1.0"; sha256="05w6pz0mwqighhdl36f2ya1b4dw0xdhpfcbq6saw73ag5hvl57i9"; depends=[bayesplot ggplot2 LaplacesDemon logspline loo rstan]; }; bmstdr = derive2 { name="bmstdr"; version="0.4.1"; sha256="16d60sk56cfychhxfkpl0m38kl1s7lhljmvfd5j1k88k8z85pabk"; depends=[BH CARBayes CARBayesST ggplot2 ggpubr inlabru MCMCpack mnormt Rcpp RcppEigen RcppParallel Rdpack rstan rstantools spBayes spTDyn spTimer StanHeaders]; }; bnClustOmics = derive2 { name="bnClustOmics"; version="1.1.1"; sha256="1pmg0q5jay8wkn24yv3j7xrdd8k6y8yjq6crjxg22yzfbbb0ws8g"; depends=[BiDAG clue graph gRbase mclust plotrix RBGL RColorBrewer]; }; bnclassify = derive2 { name="bnclassify"; version="0.4.7"; sha256="010447r21i5r2nk843v8dmfncqgmp4yf71ahcrppqv8vxfywcg6i"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; }; bndesr = derive2 { name="bndesr"; version="1.0.2"; sha256="10xpf4x5xk70bxbqwlc2niw3chd7czgnmz6073mmxpg6qd7qzyhv"; depends=[curl dplyr janitor lubridate RCurl readr readxl stringr]; }; bndovb = derive2 { name="bndovb"; version="1.1"; sha256="16mvkvwnx61jrvraagvxf56pvmf5klm8lnkqq4s5y2z92kd0clgp"; depends=[dplyr factormodel MASS nnet np pracma]; }; - bnlearn = derive2 { name="bnlearn"; version="4.8.1"; sha256="1b6k9jjwfxll7w3gnwnx8r912f9kfrxikhq8143f53m3ngq1ng32"; depends=[]; }; + bnlearn = derive2 { name="bnlearn"; version="4.8.3"; sha256="19yd6g3n7mbf03zpadwz4xcsq3d1n7fn3pgfgr1i1hjxhg2vg2n6"; depends=[]; }; bnma = derive2 { name="bnma"; version="1.5.0"; sha256="0h7nk28ny4capnji1j5m2kzsc7l8a1z7icx0iak87pk4abzqlzmm"; depends=[coda ggplot2 igraph rjags]; }; bnmonitor = derive2 { name="bnmonitor"; version="0.1.3"; sha256="1y4lm2x5wcndpbvs1g64avgv03jw57gks3vf0hdwwr94kxyzfway"; depends=[bnlearn dplyr ggplot2 gRain gRbase purrr qgraph RColorBrewer reshape2 rlang tidyr]; }; bnnSurvival = derive2 { name="bnnSurvival"; version="0.1.5"; sha256="1d9jmfx0id4lmw122zga7hb52vlfdfqn4amhzpsmhyck99rv92j4"; depends=[pec prodlim Rcpp]; }; @@ -6758,29 +6843,30 @@ in with self; { bodycomp = derive2 { name="bodycomp"; version="1.0.0"; sha256="1hi3x2chs87ba5nh7ka6xjrl5yvwqqcdyj1dg87rpaiipyl8396n"; depends=[]; }; boilerpipeR = derive2 { name="boilerpipeR"; version="1.3.2"; sha256="1dws84ghc5r6zpnr23qd4l9bkazds8ar723wkrkikjni58vshjf1"; depends=[rJava]; }; bolasso = derive2 { name="bolasso"; version="0.2.0"; sha256="1fbd39jyxq0zfbybrzzwnyql2w8hf2b9133jj0nl99d1326wr7dh"; depends=[future_apply gamlr ggplot2 glmnet Matrix progressr Rdpack tibble]; }; - bold = derive2 { name="bold"; version="1.2.0"; sha256="0r54ylxgmq9qnh1f36k4hafh80n86ibk4a994f8b1rnb9bq9f5cg"; depends=[crul data_table jsonlite plyr reshape stringr tibble xml2]; }; + bold = derive2 { name="bold"; version="1.3.0"; sha256="0pwglcykyl5dnhqs8jg4hzih286v17w5dafkg3ahqk3c73a13b8f"; depends=[crul data_table jsonlite stringi xml2]; }; bondAnalyst = derive2 { name="bondAnalyst"; version="1.0.1"; sha256="0bygaldjgxbjqjnlgs64vdayr7kp6sjl6qffdywxpi7v0yfi072a"; depends=[Rdpack]; }; bonn = derive2 { name="bonn"; version="1.0.2"; sha256="1z22cdizz8sgw4fry98adcjvn23ag3qvvcinbg3kmafksdk1ivmb"; depends=[httr jsonlite]; }; bonsai = derive2 { name="bonsai"; version="0.2.1"; sha256="048nfgnzsi0zz0nsxl30nsjg63nszy44881s49g9hgs3vng2vmp2"; depends=[cli dials dplyr glue parsnip purrr rlang tibble]; }; - bookdown = derive2 { name="bookdown"; version="0.33"; sha256="1hwj51nbqrv1qin69ni53gf3lk50q5ndn61a414sprl3qg8f3212"; depends=[htmltools jquerylib knitr rmarkdown tinytex xfun yaml]; }; + bookdown = derive2 { name="bookdown"; version="0.34"; sha256="049jq2csazk5wkn6ck0izvy49g4i612d9n5w3d89mqmmx9nax7ml"; depends=[htmltools jquerylib knitr rmarkdown tinytex xfun yaml]; }; bookdownplus = derive2 { name="bookdownplus"; version="1.5.8"; sha256="1cdxz5c69cgdk7wxr0xwhzw361rpg7j8xjv9hjf1877qqmhxbrkd"; depends=[bookdown knitr magick xaringan]; }; + boostingDEA = derive2 { name="boostingDEA"; version="0.1.0"; sha256="0df19q44fsv0hvda4dwq302wsh6vlalwszyh0ir66r5ryrrmhas4"; depends=[dplyr lpSolveAPI MLmetrics Rglpk]; }; boostmtree = derive2 { name="boostmtree"; version="1.5.1"; sha256="17na38k052lzjrssvxssllm9fwpnzhr29g9wwcfkbja6rv2pw9p1"; depends=[nlme randomForestSRC]; }; boot = derive2 { name="boot"; version="1.3-28.1"; sha256="0lzz08fpn80qzm197s4806hr6skanr3r3rlx6bx7zk4cripygkfl"; depends=[]; }; boot_heterogeneity = derive2 { name="boot.heterogeneity"; version="1.1.5"; sha256="0g4zkvx8krqh54xvjh1a0ybwl3v5bg3l670ycgnps8kkw32w5p1f"; depends=[HSAUR3 knitr metafor pbmcapply rmarkdown]; }; boot_pval = derive2 { name="boot.pval"; version="0.4.1"; sha256="0igrxp5ii7wxpx7i8z8dws41yjhiysdhvl19ppcicfx54z62c09d"; depends=[boot car lme4 Rdpack survival]; }; bootCT = derive2 { name="bootCT"; version="1.1.1"; sha256="172a4a2plvhwqvippwbrshbn2n237qnadl4pwx7f5bfs25ichqn0"; depends=[aod ARDL dplyr dynamac gtools pracma Rcpp RcppArmadillo stringr usethis vars]; }; bootComb = derive2 { name="bootComb"; version="1.1.2"; sha256="0gg07ck2nf0ddqc5nflk5ms16m3c6dlf1a77m58q581mkavj6gyb"; depends=[MASS]; }; - bootES = derive2 { name="bootES"; version="1.2.1"; sha256="16b14bycy3ds09hsxnk738k2xq9qmwcy3kzdqd6rw9w4j7167kf0"; depends=[boot]; }; + bootES = derive2 { name="bootES"; version="1.3.0"; sha256="05brahlh7jk9n1wv4l429vf048x51v1ivvchlxfcqvky06zjwk1z"; depends=[boot]; }; bootGOF = derive2 { name="bootGOF"; version="0.1.0"; sha256="11nn4lc9wdx1z35mfpc3zkk1xr0pvvjyvjzpjlq3z4gm0hmniifz"; depends=[checkmate R6]; }; bootImpute = derive2 { name="bootImpute"; version="1.2.0"; sha256="04i81dqxygl3hv55kn8nkrqzhqsxw2lpdmdfh8inf8rjcpql5bgw"; depends=[mice smcfcs]; }; bootLR = derive2 { name="bootLR"; version="1.0.2"; sha256="1aj5l42d5y7czxzlg6r9ykdxyjf8m8bahl41xk4k6xpxckdnka14"; depends=[binom boot]; }; bootPLS = derive2 { name="bootPLS"; version="0.9.9"; sha256="1i0bzykwjimyswb0z23sqbhm98b9lxifnkby682khva7yfk7k8qr"; depends=[bipartite boot doParallel foreach mvtnorm pls plsRglm spls]; }; bootSVD = derive2 { name="bootSVD"; version="1.1"; sha256="16d3qv8vzhfvl9vbfglkb3csmc4npb29jcq9apv89hj7bkcapvi9"; depends=[ff]; }; bootStepAIC = derive2 { name="bootStepAIC"; version="1.3-0"; sha256="1dmziq6yfycpap4hhlzl3xg2hsx4y135hy7r6qh9p98vxpa6mycl"; depends=[MASS]; }; - bootUR = derive2 { name="bootUR"; version="0.5.0"; sha256="1v79vi3jawiixph55r7ysjqkgjy1hk1n774sx3k2xzkll8bsm5l9"; depends=[parallelly Rcpp RcppArmadillo RcppParallel RcppThread urca]; }; + bootUR = derive2 { name="bootUR"; version="1.0.2"; sha256="0wqirnj01jfn0q9sa36qixmzf8n8m1x5rrp348brzfbasm0gl9j6"; depends=[parallelly Rcpp RcppArmadillo RcppParallel RcppThread urca]; }; bootcluster = derive2 { name="bootcluster"; version="0.3.2"; sha256="0wkc9li0hqgns7pz72fby187q81yzrgl62qs8w5llayghf8lhaml"; depends=[cluster doParallel dplyr flexclust foreach fpc GGally ggplot2 gridExtra igraph intergraph mclust network plyr sna]; }; bootf2 = derive2 { name="bootf2"; version="0.4.1"; sha256="17wrl678x9mb5pny2vwrr6sdl2hsqr1nbjzsizp2q6l3w5m6s152"; depends=[ggplot2 MASS minpack_lm readxl]; }; - bootnet = derive2 { name="bootnet"; version="1.5"; sha256="13pfmr259yikkb3y9438xz4bjn6kx5w5d2jhx441a00rvv1kb3hi"; depends=[abind corpcor dplyr ggplot2 gtools igraph IsingFit IsingSampler Matrix mgm mvtnorm NetworkToolbox networktools pbapply qgraph rlang snow tibble tidyr]; }; + bootnet = derive2 { name="bootnet"; version="1.5.1"; sha256="1pbv37nqb05snnbvg5fqwnh0lnbzijb8dvm3f3ppv621rwd0vw8f"; depends=[abind corpcor dplyr ggplot2 gtools igraph IsingFit IsingSampler Matrix mgm mvtnorm NetworkToolbox networktools pbapply qgraph rlang snow tibble tidyr tidyselect]; }; bootruin = derive2 { name="bootruin"; version="1.2-4"; sha256="1gbvh99snchipf13kjhymcx60s2kni23y7lv8lhzd3d402grp68h"; depends=[]; }; bootstrap = derive2 { name="bootstrap"; version="2019.6"; sha256="1546jqhhw5h177ii8jkdikyd26rv6gwkav816np1zks4p7zgsljj"; depends=[]; }; bootstrapFP = derive2 { name="bootstrapFP"; version="0.4.4"; sha256="1j9ag18s2n7cihs5hbjhibx8gikxf8fs5hx2ljfzcn0gv492qm02"; depends=[sampling]; }; @@ -6790,16 +6876,17 @@ in with self; { botor = derive2 { name="botor"; version="0.4.0"; sha256="0avw7h0m2dm9nn5ya1y6kcgdh438v63y42w3y2dag24iyligx0wq"; depends=[checkmate jsonlite logger reticulate]; }; boundingbox = derive2 { name="boundingbox"; version="1.0.1"; sha256="0kgpsvnq8f0qyw55rldwqapys36y6lb4w2bw2azfl4nmrrnayxbc"; depends=[gplots imager]; }; boussinesq = derive2 { name="boussinesq"; version="1.0.4"; sha256="1gl3hapb31qgdh6jr15czlvdmr58vz2vmlv7p89zpqnyl9lc7vgm"; depends=[]; }; - boutliers = derive2 { name="boutliers"; version="1.1-1"; sha256="01dp1w5lxmn6nixajg6dz0qincm0i1in03q7g284v37qnszyimqs"; depends=[metafor]; }; - box = derive2 { name="box"; version="1.1.2"; sha256="10hgq9v0bjzkcnya0k7fjlidri02c1p6ph70q3gvi29qp3b22plq"; depends=[]; }; - boxfilter = derive2 { name="boxfilter"; version="0.1"; sha256="1q3vs2js1l5416rc1krsglfv4hz00xdgb2cmmxdmhr6bzxq8mxdc"; depends=[ggplot2 gridExtra]; }; + boutliers = derive2 { name="boutliers"; version="1.1-2"; sha256="0j2y6ndj03shssa7pgvg9cwbm5mv7ahy9kypj9z1ahskdi4xg1m1"; depends=[MASS metafor]; }; + box = derive2 { name="box"; version="1.1.3"; sha256="0nqvgbs47xlkq5gq1jdx3ikvwzvq71q44ddyz8pbh0bibayhkz52"; depends=[]; }; + boxfilter = derive2 { name="boxfilter"; version="0.2"; sha256="03qx2bsqg7kkpf2q6xrj7ap0aczgascdrnkj5bcl3aq278fahnxi"; depends=[ggplot2 gridExtra]; }; + boxplotcluster = derive2 { name="boxplotcluster"; version="0.1"; sha256="00pl2gq7j6mvq0hkryba9iqy2kxwkwp4f2rkfivaz69x5gg780f2"; depends=[cluster]; }; boxplotdbl = derive2 { name="boxplotdbl"; version="1.4.0"; sha256="0yfkkafrq329l6yxbnpwm8yqidixxh7k124xjy5xa92pbng2clbd"; depends=[]; }; boxr = derive2 { name="boxr"; version="0.3.6"; sha256="1hdm4p7zx2r566zaiyw06qg3c790gsvylrvav7g9fl4i1x6qgkyk"; depends=[assertthat bit64 digest dplyr fs glue httpuv httr jsonlite lifecycle magrittr mime purrr rio rlang stringr tibble]; }; bp = derive2 { name="bp"; version="2.1.0"; sha256="0qdpm5nfx2jhc0s77x839jdmk07c88xf739dwf2n8hqhk24y0cdr"; depends=[cowplot dplyr ggplot2 gridExtra gtable lubridate magrittr tibble tidyr tidyselect]; }; bpAcc = derive2 { name="bpAcc"; version="0.0-1"; sha256="1q0gn6n215720d0c39awdjpxpp5ijv4yp6wah9snw1jhiphdl68q"; depends=[]; }; bpDir = derive2 { name="bpDir"; version="0.1.2"; sha256="1wkj25srsbidpcvgm6c74584ahybjy39r86dxir1vd13kbi8l120"; depends=[circular MASS plotrix]; }; bpa = derive2 { name="bpa"; version="0.1.1"; sha256="0np7q1nasrq4j7ssaipvbjgrsi9n612p9lp96frq1dgix95mcgf0"; depends=[magrittr plyr]; }; - bpbounds = derive2 { name="bpbounds"; version="0.1.4"; sha256="05knl0lmhbc399zwb35r8m1w5jvmwad8rg5m7m633pg7cfijayb9"; depends=[]; }; + bpbounds = derive2 { name="bpbounds"; version="0.1.5"; sha256="0qzvy6a41p4nrsw91xh0bv03v8ksfv4fag365pzlwisa1ng88sqj"; depends=[]; }; bpca = derive2 { name="bpca"; version="1.3-4"; sha256="1b0qigynj35sr5nf9y6hvcr52ydskqwx5wxwb27zawps3iykyjwf"; depends=[rgl scatterplot3d xtable]; }; bpcp = derive2 { name="bpcp"; version="1.4.2"; sha256="1xgspmknjs7cqh0iw3qgikbxpbl2qscjx9n07ib5s3z8hi282wrn"; depends=[ggplot2 survival]; }; bpgmm = derive2 { name="bpgmm"; version="1.0.9"; sha256="0wrdh4c8yws7z5zd1yl23wbja88x57x651kqbnqj70k9a1195rwc"; depends=[fabMix gtools label_switching MASS mclust mcmcse mvtnorm pgmm Rcpp RcppArmadillo]; }; @@ -6808,7 +6895,7 @@ in with self; { bpnreg = derive2 { name="bpnreg"; version="2.0.2"; sha256="1acf7smlcg8b29ga47wpb23zpfb90iz19fjc5v0zppc8q20lgggl"; depends=[BH haven Rcpp RcppArmadillo]; }; bpp = derive2 { name="bpp"; version="1.0.4"; sha256="07vz00y9m71n3a847jpviwyy0zb59402yyklsfmyxmggjivpjshi"; depends=[mvtnorm]; }; bpr = derive2 { name="bpr"; version="1.0.6"; sha256="1j8b6d8k2czsi02gyy1kgf4jdi4s9wr881c3j4xg359hrrx7fnz8"; depends=[BH coda MASS Rcpp RcppArmadillo]; }; - bqror = derive2 { name="bqror"; version="1.6.0"; sha256="0h0nhbid32m5fs97f5ypc2jz04yzik5bxpgf7rp5albr9rcbwnr4"; depends=[GIGrvg invgamma MASS NPflow pracma progress truncnorm]; }; + bqror = derive2 { name="bqror"; version="1.6.1"; sha256="0mg82bcc3cw2zhqz2j9539kw7cs159lzw363a2abcm7ys66dp6bd"; depends=[GIGrvg invgamma MASS NPflow pracma progress truncnorm]; }; bqtl = derive2 { name="bqtl"; version="1.0-34"; sha256="1xlkgyhlgrwqfzph4sbhh49pjzfnw5zdr3y4786rsnr3faksnxns"; depends=[]; }; braQCA = derive2 { name="braQCA"; version="1.2.1.29"; sha256="0w1mg8lzl64mp5clinq3zai733iz3628zp4pw6vr51z24s56jg6i"; depends=[bootstrap dplyr QCA]; }; bracer = derive2 { name="bracer"; version="1.2.2"; sha256="0kbx30icv966sjv93as4yq88vkavbw68a7v2fnrvblzx2dgcis1n"; depends=[stringr]; }; @@ -6822,7 +6909,7 @@ in with self; { brandwatchR = derive2 { name="brandwatchR"; version="0.3.0"; sha256="10bccsaswsq06wdrxqg71amzx5rabmgfi4n074y651r2c1pyy98w"; depends=[data_table httr jsonlite]; }; brant = derive2 { name="brant"; version="0.3-0"; sha256="0rcp0am4wjlkinvmv0n5bky84v31ds28v163p5mlp343cgma2b62"; depends=[MASS Matrix]; }; brassica = derive2 { name="brassica"; version="1.0.2"; sha256="1av52p39jsv54q02v8xa7xilwmz5vzj6zy68y9m5lgl6s86r509y"; depends=[]; }; - bravo = derive2 { name="bravo"; version="2.1.2"; sha256="0gs8vplb3sfp82bldbq1glqhr6j2p4pbzxfbhy61sjs88kvh0bp2"; depends=[Matrix Rcpp]; }; + bravo = derive2 { name="bravo"; version="2.2.1"; sha256="1lyfwsk1r6nfqaybwd6was9af4flbqhbqsjsnfjmc7hya2kcq26f"; depends=[Matrix Rcpp]; }; brclimr = derive2 { name="brclimr"; version="0.1.2"; sha256="0l2gk9zqa3lh9a4343h2n8ffm2x1arp84k44ah37krpsbxsvam6j"; depends=[arrow checkmate dplyr lobstr magrittr rlang]; }; brea = derive2 { name="brea"; version="0.2.0"; sha256="0mb043fdhxrg9gyf4g55ydjx37j20394nvd4d0fmiym98lccyi04"; depends=[]; }; bread = derive2 { name="bread"; version="0.3.1"; sha256="0pgcrasqmsa5hq9a50w03fay898zzh2h0lb755pfbna70s6gxxgs"; depends=[data_table]; }; @@ -6853,7 +6940,6 @@ in with self; { brmsmargins = derive2 { name="brmsmargins"; version="0.2.0"; sha256="1qdfig1cy5cf3csky995m0jybb2hyp7yq7ka67wircrln919c1nm"; depends=[bayestestR brms data_table extraoperators posterior Rcpp RcppArmadillo]; }; brnn = derive2 { name="brnn"; version="0.9.2"; sha256="17vsvncilisjp3sjblwg0knn8l4984p4ndql6rbq3wg8n677sy9x"; depends=[Formula truncnorm]; }; brokenstick = derive2 { name="brokenstick"; version="2.5.0"; sha256="0bq470kvv9084qaaaz5yicmxpljp23gb3dqijrmdwk1agqxn09mc"; depends=[coda dplyr lme4 matrixsampling rlang tidyr]; }; - brolgar = derive2 { name="brolgar"; version="1.0.0"; sha256="0jw0cnszwdcj6jdxpr17bq338jaxihaacg62rr3n1ayig54bgbyn"; depends=[dplyr fabletools ggplot2 glue magrittr purrr rlang tibble tidyr tsibble vctrs]; }; broman = derive2 { name="broman"; version="0.80"; sha256="02k8bxv8kpkasxn2m1z5ccvr9gg9lc8k3hskyaf7gvr4khhf575s"; depends=[ggplot2]; }; broom = derive2 { name="broom"; version="1.0.4"; sha256="1mhavmma0d075bbcnis9jkr4ar2dw91p44yxzx2qlskq16si2pqx"; depends=[backports dplyr ellipsis generics glue lifecycle purrr rlang stringr tibble tidyr]; }; broom_helpers = derive2 { name="broom.helpers"; version="1.13.0"; sha256="0k3bd9f42dzp7xjqn43yfwajxzzm2h6f66npp9wjyx750jkaf1q1"; depends=[broom cli dplyr labelled lifecycle purrr rlang stringr tibble tidyr]; }; @@ -6861,6 +6947,7 @@ in with self; { brotli = derive2 { name="brotli"; version="1.3.0"; sha256="0zivyhyf6g7lb8r919a1cc2xvi36g6cszpl9rr200nfvvw6r6zf1"; depends=[]; }; brpop = derive2 { name="brpop"; version="0.1.5"; sha256="12ngmyqbrqv1hwyh9y8wf9dyr816fxan8vqw0r2jgymsir9c5k6s"; depends=[dplyr future magrittr multidplyr rlang]; }; brr = derive2 { name="brr"; version="1.0.0"; sha256="050ivnqcaxiyypd1sxfpy6ianhzzmvs6c77ga40g3440cvfigkgw"; depends=[gsl hypergeo pander stringr SuppDists TeachingDemos]; }; + brsim = derive2 { name="brsim"; version="0.1"; sha256="0nqmmsxyarx0976yr0hrjyyklrr0i714cgsdg6gmxm9yy61a8578"; depends=[cluster corrplot RcmdrMisc]; }; bruceR = derive2 { name="bruceR"; version="0.8.10"; sha256="0qi8d542l8vj6mbk4kkv3r8wlrhlx2pqyaq7k7pi35cvivwqgaq0"; depends=[afex data_table dplyr effectsize emmeans ggplot2 interactions jtools lavaan lmerTest mediation MuMIn performance plyr psych rio rstudioapi stringr texreg tidyr]; }; brulee = derive2 { name="brulee"; version="0.2.0"; sha256="136dzg00and00h94w75yc5hr4xxci59ydns203ilys08hlnmjqvh"; depends=[cli coro dplyr generics ggplot2 glue hardhat rlang tibble torch]; }; brunnermunzel = derive2 { name="brunnermunzel"; version="2.0"; sha256="1sz1nx9lgl7pwgx9a5m59svajsk4qv0ajzzkw9123vrh0wydy6j3"; depends=[]; }; @@ -6876,10 +6963,10 @@ in with self; { bslib = derive2 { name="bslib"; version="0.4.2"; sha256="069ghbzp0bsmbw2nzw28cmbym65i3a90v50y7qksy2g4pfhvfh4s"; depends=[base64enc cachem htmltools jquerylib jsonlite memoise mime rlang sass]; }; bsnsing = derive2 { name="bsnsing"; version="1.0.1"; sha256="1a1vxh1fc5vz7wk73m093bvpz9qb52cfrxcj5yiqm56v309jckzk"; depends=[Rcpp]; }; bspec = derive2 { name="bspec"; version="1.6"; sha256="19l1sagx6kn6i8mcs3i0h6rh7rwsyhphncv55jywpv4g6616kqcv"; depends=[]; }; - bspline = derive2 { name="bspline"; version="2.1"; sha256="17k9phl5xlk5gqr220gp2cz749apqfi94kka7q6rzywkn1fb85ff"; depends=[arrApply nlsic Rcpp RcppArmadillo]; }; + bspline = derive2 { name="bspline"; version="2.2"; sha256="0v7kbg7h0d0s2ywvjpahk2y2ncbv8kmacdznaixxakccqbl8piip"; depends=[arrApply nlsic Rcpp RcppArmadillo]; }; bsplinePsd = derive2 { name="bsplinePsd"; version="0.6.0"; sha256="0f785l02hiq3f7anxqhm09f7lrqgkkqhly7f1x78cxm22hvrqyhg"; depends=[Rcpp]; }; bsplus = derive2 { name="bsplus"; version="0.1.4"; sha256="0bf8qvj7pk3xn7g4p89as1xzx56c75n842g27rj6lcgsf9rdmv9g"; depends=[glue htmltools jsonlite lubridate magrittr purrr rmarkdown stringr]; }; - bspm = derive2 { name="bspm"; version="0.5.1"; sha256="1wd6khqwi7g9c3chf9idiv3paa9xc2l1p6vvg0x0061bk3syjm66"; depends=[]; }; + bspm = derive2 { name="bspm"; version="0.5.2"; sha256="0m74l1nc2bx0n7bldqa18qpm4ls4kq74g76g2ki6vaf9klgv321d"; depends=[]; }; bspmma = derive2 { name="bspmma"; version="0.1-2"; sha256="1a3p1h7bks5yrxv791wfa680v4a6q10p59iz6wvfifhf3ndlaw49"; depends=[]; }; bsreg = derive2 { name="bsreg"; version="0.0.2"; sha256="13701llj5k7vssmgb4fvxswcf9bsc4pxjvh67znbsvrv5cmjh5x3"; depends=[Matrix R6]; }; bssm = derive2 { name="bssm"; version="2.0.1"; sha256="19ii7hs4plgq31yiyr0258y22xckd5dv7k5dp2cwkzrr3h544ylz"; depends=[checkmate coda diagis dplyr magrittr posterior ramcmc Rcpp RcppArmadillo rlang sitmo tidyr]; }; @@ -6890,10 +6977,11 @@ in with self; { bsub = derive2 { name="bsub"; version="1.1.0"; sha256="112hlvg15jlzg3drfzkslaly42vnvsycn9vif0w3iaw5fzsaa954"; depends=[clisymbols crayon digest GetoptLong GlobalOptions]; }; bsvars = derive2 { name="bsvars"; version="1.0.0"; sha256="0d5c8fjnigm4zsfzhki1vsdgc310dba716sdiag8vqq7m1r3g2yc"; depends=[GIGrvg R6 Rcpp RcppArmadillo RcppProgress RcppTN]; }; btb = derive2 { name="btb"; version="0.2.0"; sha256="1gm03md6ky134nzmnnp054mi2w8kl4bgcgg4k65zf2cyniz4arxq"; depends=[BH dplyr magrittr mapsf Rcpp RcppArmadillo RcppParallel sf]; }; - bubbleHeatmap = derive2 { name="bubbleHeatmap"; version="0.1.0"; sha256="1xrcdz6061gwi3bvkxz3bl9b0bp6q9rxn1v54gzjr2fyrlcx3bwc"; depends=[reshape]; }; + btergm = derive2 { name="btergm"; version="1.10.10"; sha256="1vh0jivl521mdjz3cb6fnazgqm9pc6wr515n7sbwvvyvn96ps6ax"; depends=[boot coda ergm igraph Matrix network ROCR sna statnet_common]; }; + bubbleHeatmap = derive2 { name="bubbleHeatmap"; version="0.1.1"; sha256="0b12bhk0c65m5izp5ayy6fl4iv0jhk7hhwbnavyggawrpz23ikxr"; depends=[reshape]; }; bubblyr = derive2 { name="bubblyr"; version="0.1.2"; sha256="04agfwk6rmbhlfblfw1irqnv3yrp00zfn4qwy2169b7ypg8r55v2"; depends=[glue htmltools]; }; bucky = derive2 { name="bucky"; version="1.0.7"; sha256="1ymlpmhgvhp7n7y9dbvi6zh73y8jvr09axq4skcliam8ks2xx1pm"; depends=[lmtest sandwich]; }; - buildmer = derive2 { name="buildmer"; version="2.8"; sha256="0czkv2cpdxwj118f37zh81am4my1l6xmbbjr47k8mlw5kkahfh3l"; depends=[lme4 mgcv nlme]; }; + buildmer = derive2 { name="buildmer"; version="2.9"; sha256="1jcn7isgg2dh84rhyz8xnh3xwxbcli70hf70dbjm4sq6a854kkk3"; depends=[lme4 mgcv nlme]; }; buildr = derive2 { name="buildr"; version="0.1.1"; sha256="117j4z6c22d9c5aghsmqsvyjc94kr0vpandgbikl5cc4zphl7w03"; depends=[glue magrittr readr rstudioapi stringr tibble usethis]; }; bujar = derive2 { name="bujar"; version="0.2-10"; sha256="0nkhwrmbkjx2wkrvflzs6a7hghdrpgyfk3f4qjycqmz5y14zswwi"; depends=[bst earth elasticnet gbm mboost mda modeltools mpath rms survival]; }; bulkAnalyseR = derive2 { name="bulkAnalyseR"; version="1.1.0"; sha256="008vnkcaa26d8620i1l49mbcr7px5x16s5x2wlq1vm0jkxya4c3z"; depends=[circlize ComplexHeatmap DESeq2 dplyr DT edgeR GENIE3 ggforce ggnewscale ggplot2 ggrastr ggrepel ggVennDiagram glue gprofiler2 magrittr matrixStats noisyr preprocessCore RColorBrewer rlang scales shiny shinyjqui shinyjs shinyLP shinyWidgets stringr tibble tidyr UpSetR visNetwork]; }; @@ -6929,13 +7017,12 @@ in with self; { c060 = derive2 { name="c060"; version="0.3-0"; sha256="0dmr9xyml69a3xggjahpc5r6kg2qf9h7hkl7kdz7qkl8aslca0zn"; depends=[glmnet lattice mlegp penalized penalizedSVM peperr survival tgp]; }; c212 = derive2 { name="c212"; version="0.98"; sha256="0pzg239602iq56nhxfdvlk26z58lz6vvlbwsdpwhmich0by4gx4x"; depends=[coda]; }; c2c = derive2 { name="c2c"; version="0.1.0"; sha256="149np512wjnlr9glmqxpiamf6c31v0bh6ym95jpdhk0iw3ic9kvh"; depends=[]; }; - c2d4u_tools = derive2 { name="c2d4u.tools"; version="1.2"; sha256="1ssp3sk5kml8in1ggnir77cq2kpmdmrhjblvw67ydxp22sqw7vwr"; depends=[]; }; c2z = derive2 { name="c2z"; version="0.1.4"; sha256="0i0n2cdbil8gd9gjygh03ihnfrwdyw0szhir6kmjrs01x0p5w9z1"; depends=[dplyr httr jsonlite purrr rlang rvest tibble tidyr tidyselect]; }; c3 = derive2 { name="c3"; version="0.3.0"; sha256="1c2k7ml153bby749qi3a6nckhwwr71mvvps9dkbzkxkwnmlwpz1h"; depends=[data_table dplyr htmlwidgets jsonlite lazyeval viridis]; }; c3net = derive2 { name="c3net"; version="1.1.1.1"; sha256="0xhl6spii8kwyqdc86wbp6zn1727xq7xnscx4ld0a6hgbra348pf"; depends=[igraph]; }; cAIC4 = derive2 { name="cAIC4"; version="1.0"; sha256="1qg73g0g029wkzpmp0fgvyfz8p1k3x38yqx0404cpb3dxj4n4hcg"; depends=[lme4 Matrix mgcv mvtnorm nlme RLRsim]; }; cIRT = derive2 { name="cIRT"; version="1.3.2"; sha256="1iwgxc1jl118j9yjhjix9f7dm75sj82iz7ic58g5625fxzdgnw25"; depends=[Rcpp RcppArmadillo]; }; - cNORM = derive2 { name="cNORM"; version="3.0.2"; sha256="06n9cq796zxiwz4myf6n9f8wik9az1rq5ckn2qbyapli2831l8ri"; depends=[lattice latticeExtra leaps]; }; + cNORM = derive2 { name="cNORM"; version="3.0.3"; sha256="0bdhddg7gfa3lxyyi8a970rg3msa90p2kpspmw3kksbiq26i4h3w"; depends=[lattice latticeExtra leaps]; }; cOde = derive2 { name="cOde"; version="1.1.1"; sha256="1h3bp97lqd1jvgnablhxdncmvbf5qwphqbs7xy3r31vpamslz77i"; depends=[]; }; cPCG = derive2 { name="cPCG"; version="1.0"; sha256="1pfbsv2rcjsryn6nr56a7i4yb7k0m3gdfn4q9l1kpzhmv9lic7m1"; depends=[Rcpp RcppArmadillo]; }; cPseudoMaRg = derive2 { name="cPseudoMaRg"; version="1.0.1"; sha256="1mf78pilhx4mqv8n0xrdzn9wkvhnb3bs7rill7n588f18bnjp9mh"; depends=[]; }; @@ -6951,7 +7038,7 @@ in with self; { cacIRT = derive2 { name="cacIRT"; version="1.4"; sha256="145j6isqa8yj2nvlqkxagd076zs10ng3n44khi5p4jj77fjc8gh6"; depends=[]; }; cacc = derive2 { name="cacc"; version="0.1.0"; sha256="0dl2n5shjagr7zjsl6cyw3jxz29h9dbjfwrhphqdaymjv6yaxxj9"; depends=[dplyr ggplot2 rlang tibble tidyr]; }; cache = derive2 { name="cache"; version="0.0.3"; sha256="0ix8z9zxslnycqn75rlz7f059jwfcclpxbas5sihcdmrdavz5ggj"; depends=[cli digest here r_assert]; }; - cachem = derive2 { name="cachem"; version="1.0.7"; sha256="02ijns4rdrhsk7jimj0vwdr7g1wpj6zjma9zgnw1y7kxjhmaskr3"; depends=[fastmap rlang]; }; + cachem = derive2 { name="cachem"; version="1.0.8"; sha256="1hj5gw040pdrl3iwvwbgyrs91jcar0pwr3kmf23wwpb1zqcsk77a"; depends=[fastmap rlang]; }; caesar = derive2 { name="caesar"; version="1.1.0"; sha256="17w19m1c4a8x68bfbll71r9d3d34xnqw7lkhvqbnajd0cdm9xpa2"; depends=[binhf]; }; caffsim = derive2 { name="caffsim"; version="0.2.2"; sha256="00bkgmmqrydpji2pvhcchgl2p8w5ksby4g80i3h76q0bm2325w9h"; depends=[dplyr ggplot2 markdown mgcv shiny tibble tidyr]; }; calACS = derive2 { name="calACS"; version="2.2.2"; sha256="0a53k2rzyjksb0ypr5zrask4a6mgiyrqx0l2z3lm218y8pk2jf1w"; depends=[]; }; @@ -6975,26 +7062,27 @@ in with self; { camerondata = derive2 { name="camerondata"; version="1.0.0"; sha256="0nj9dxwklhqyqrqfq88vpi4mdd6gvd3mzi80h8fi7hjzv5pmgqad"; depends=[]; }; campaignmanageR = derive2 { name="campaignmanageR"; version="0.1.0"; sha256="1x240l0jlyg4ldb4j9pa2v2nryxnyg8y14ywcdcpfnw4056ms3f5"; depends=[jsonlite]; }; campfin = derive2 { name="campfin"; version="1.0.10"; sha256="0abz6lc83hkpb9y54wyw8rj0qc84lbf9zqrna58ip37lkkm890r7"; depends=[dplyr fs ggplot2 glue httr lubridate magrittr purrr readr rlang scales stringdist stringr tibble]; }; - campsismod = derive2 { name="campsismod"; version="0.9.0"; sha256="0263glkd1yixg7d6jpv7rirnpp4a7hrmw8iv3069ih04kbcqrzxd"; depends=[assertthat dplyr magrittr plyr purrr readr tibble]; }; + campsis = derive2 { name="campsis"; version="1.4.1"; sha256="1bazp26czp1xpbydcj8slkx819655wg8yhvppmmzsl04vhibkk9n"; depends=[assertthat campsismod digest dplyr furrr future ggplot2 MASS plyr progressr purrr rlang tibble tidyr]; }; + campsismod = derive2 { name="campsismod"; version="1.0.0"; sha256="0xjy9hri319flbz5c8rsy34c12g5nn3v8casqjl22z1bi3f4r0fz"; depends=[assertthat dplyr magrittr plyr purrr readr tibble]; }; camsRad = derive2 { name="camsRad"; version="0.3.0"; sha256="06gar6qan1ka01ngjvbpcv649yvfga697mplwn1x6qnfr4ngb7cs"; depends=[httr xml2]; }; camtrapR = derive2 { name="camtrapR"; version="2.2.0"; sha256="12lhw8r1r3xlazm1w3x73fq3krwpvbv6w3rsmlmksaai4nxp2fn8"; depends=[data_table generics ggplot2 lubridate overlap secr sf sp]; }; - canadacovid = derive2 { name="canadacovid"; version="0.3.4"; sha256="1hxcz3bk0p063cidj19zzacvxarpracnzglmb1212b2jx9w4i3gw"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang stringr tibble tidyr tidyselect]; }; canadamaps = derive2 { name="canadamaps"; version="0.1"; sha256="1i3yjhr5p06k6id3gws5dzdhf4jy143brbfhi2z4srq67xlz5agl"; depends=[dplyr magrittr rlang rmapshaper sf]; }; canadianmaps = derive2 { name="canadianmaps"; version="1.0.0"; sha256="1r45d65w8yfgwj8xf6lhsw0fi1b8j8gyayxrcs7wy56kacjjvym8"; depends=[dplyr ggplot2 ggrepel RColorBrewer rgdal sp]; }; - canaper = derive2 { name="canaper"; version="1.0.0"; sha256="18b1sr6xpf4iljjb5jcxldlfk4x1d4w9j2pw8196r1k02qpg79ki"; depends=[ape assertr assertthat dplyr future_apply phyloregion progressr purrr tibble vegan]; }; + canaper = derive2 { name="canaper"; version="1.0.1"; sha256="12is3x3srmdf39csf8q09n2377h9my2qwy0knwc3kfjdg6f9yzs7"; depends=[ape assertr assertthat dplyr future_apply phyloregion progressr purrr tibble vegan]; }; cancensus = derive2 { name="cancensus"; version="0.5.5"; sha256="1cvb7v2v4hsy97m67369xxscb5a9igszsvif9b4d60ngh4j51a0z"; depends=[digest dplyr httr jsonlite rlang]; }; cancerGI = derive2 { name="cancerGI"; version="1.0.0"; sha256="1chkcyf9m98gbn6b3vmb1baw7kii4g5vxvg2xfi7i6wwdn8sqr65"; depends=[igraph qvalue reshape2 survival systemfit]; }; cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; }; candisc = derive2 { name="candisc"; version="0.8-6"; sha256="17bhh3jgaq5hrlwaapwpsgk7f8a3sg2cmrjd1hgfxxx0z30a6icn"; depends=[car heplots]; }; canprot = derive2 { name="canprot"; version="1.1.2"; sha256="1lwlgzy0gxp7jrak838awmqz3w0x7qd51bkyhydb1s61073w77x8"; depends=[CHNOSZ MASS rmarkdown xtable]; }; cansim = derive2 { name="cansim"; version="0.3.14"; sha256="070mgphg2hvfccqqnkimfgf2j81b3vd6cn2ymanfm4n8gd6bwjjs"; depends=[DBI digest dplyr httr jsonlite purrr readr rlang RSQLite rvest stringr tibble xml2]; }; - canvasXpress = derive2 { name="canvasXpress"; version="1.42.9"; sha256="00xsgh1i121waq7p7dvabd4ihaiknpnqx8isj6bajv06jh0nnp0j"; depends=[htmltools htmlwidgets httr jsonlite]; }; + canvasXpress = derive2 { name="canvasXpress"; version="1.43.7"; sha256="05ax2r25d4v22m3br2v7sxz5j51vyvf1s91291ns99agpdds04c8"; depends=[htmltools htmlwidgets httr jsonlite]; }; canvasXpress_data = derive2 { name="canvasXpress.data"; version="1.34.2"; sha256="10fdlb1yp5x9533jdammncfrrlxzpcz9as8i0209pwzjywvxby3s"; depends=[]; }; cap = derive2 { name="cap"; version="1.0"; sha256="1pv8hskxjbp589dn7rx80yaa1ld76x1w37bss2fyrys1p3qr78aa"; depends=[MASS multigroup]; }; cape = derive2 { name="cape"; version="3.1.1"; sha256="0srgajj77a66pxj4kghjv4hjswv8arfmxbq25mpccc0fzalz1zlp"; depends=[abind caTools corpcor doParallel evd foreach here igraph Matrix pheatmap pracma propagate qtl qtl2 qtl2convert R6 RColorBrewer regress shape yaml]; }; caper = derive2 { name="caper"; version="1.0.1"; sha256="0md0sngj7wsv2d4d7fmyyz9qqismk3ps9l3qk1blqz1yi19pq124"; depends=[ape MASS mvtnorm]; }; capitalR = derive2 { name="capitalR"; version="1.3.0"; sha256="08lvncia9mdrnw84zydf1k7336xawiirh2swziqfwx3z1n172n52"; depends=[]; }; capl = derive2 { name="capl"; version="1.42"; sha256="0w0w8m4pcclmmk56cad3f2zdfxd5vh312aja8g0c59s9n1hkdw56"; depends=[dplyr ggplot2 lubridate magrittr readxl stringr writexl]; }; + caplot = derive2 { name="caplot"; version="0.1"; sha256="1b9chr0glrj5pg1anmkgl2ck18vxbd5qj6v5pvp5cmlh1f3nwzn9"; depends=[ca ggplot2 ggrepel]; }; capm = derive2 { name="capm"; version="0.14.0"; sha256="0c3rnc1qd9c4v0jj8ihg6bdhpqvfnpafkqyqkar6fwnlvgw48z83"; depends=[circlize deSolve dplyr FME ggplot2 magrittr sf survey tidyr]; }; capn = derive2 { name="capn"; version="1.0.0"; sha256="14vfk00xyx0az3whmxjpcv1785lf0gx81w7qc54i3wcfp3i22kcr"; depends=[]; }; captioner = derive2 { name="captioner"; version="2.2.3"; sha256="0xg72pmgm84f0v45phfwxpsslhf12nhn1swmrj1yifj7g9sjvybj"; depends=[]; }; @@ -7004,7 +7092,7 @@ in with self; { carData = derive2 { name="carData"; version="3.0-5"; sha256="06j52rpbqi6fj7chfjwjbwbr6slrbb7i3aygv66gnfiyndcp3rq2"; depends=[]; }; carSurv = derive2 { name="carSurv"; version="1.0.0"; sha256="0wv7lp10i4sdfqyizg77ghblp3pcp7wzhs946sm0wl6w00krav9j"; depends=[corpcor fdrtool mboost Rcpp survival]; }; caracas = derive2 { name="caracas"; version="2.0.0"; sha256="15ab0j5hvxlc9msb2xf9nxxdc2crrdsbwi5x3hvqfxs5yydj6wcj"; depends=[doBy magrittr Matrix reticulate]; }; - carat = derive2 { name="carat"; version="2.1.0"; sha256="12b6n99m1zcqxqsa2dk36i6g9qwmd8lzr3mlvj5454n4bgvqb4h0"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo stringr]; }; + carat = derive2 { name="carat"; version="2.2.0"; sha256="1hdh96plf0cyhsijzfm7ydc24yf497wadcn91p7b2s1s42makzkn"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo stringr]; }; carbonate = derive2 { name="carbonate"; version="0.1.4"; sha256="01k8c49v8ybgcwdr9ipw319lxw4p14w9bzl54j1ljbajdzgzcgwk"; depends=[clipr details httpuv httr jsonlite magick R6 RSelenium rtweet wdman yaml]; }; carcass = derive2 { name="carcass"; version="1.6"; sha256="0nhp35nxjqqmy15rf9vc0qyymy7d0v8mc84570b9nc62g5xac8xy"; depends=[arm expm lme4 MASS survival]; }; card = derive2 { name="card"; version="0.1.0"; sha256="1api0j06fp5av5a48vnnm1wvwdcskynf0xsj9pb41njxdh9v8daf"; depends=[broom data_table dplyr generics ggplot2 ggrepel hardhat Hmisc lubridate lutz magrittr purrr readr recipes rlang sf stringr survival tibble tidyr]; }; @@ -7019,20 +7107,23 @@ in with self; { caribou = derive2 { name="caribou"; version="1.1-1"; sha256="1spz5ymqv8k48yg0rrdrs9ylasdif2jwcq2z33gagd6yrim1a3q3"; depends=[]; }; caroline = derive2 { name="caroline"; version="0.9.0"; sha256="1j1s4jli3pjl815fhmhz063y8aimz1qr14gacf9rvs7hyandlcbj"; depends=[]; }; carpenter = derive2 { name="carpenter"; version="0.2.2"; sha256="13ahhdc6f5ngrhb7slqbxzfs3wswixh0argyr6l46cv4fdkaa80s"; depends=[dplyr lazyeval magrittr pander tibble tidyr]; }; - carrier = derive2 { name="carrier"; version="0.1.0"; sha256="0bqnwnnjqjk9q0lxq6kkz9s75ss10lfyyywyyi24m8wppxpw1vqc"; depends=[pryr rlang]; }; + carrier = derive2 { name="carrier"; version="0.1.1"; sha256="155zna5bv6ybb6hr3lsv8dn67lkbbvn3dbihfw2s6ajkzvms9x13"; depends=[lobstr rlang]; }; cartograflow = derive2 { name="cartograflow"; version="1.0.3"; sha256="09n3pgm70frrx9li1djrwkf4lzcq9c1xjs037vmsb1as0xvd19a1"; depends=[dplyr ggplot2 igraph maptools plotly reshape2 rgeos rlang sf sp]; }; - cartogram = derive2 { name="cartogram"; version="0.2.2"; sha256="0kz8hwdr5n8llkylwaixnb66f4pzaxxniz57spxhqizmi6qay7yd"; depends=[packcircles sf]; }; + cartogram = derive2 { name="cartogram"; version="0.3.0"; sha256="1vkcp8k9ajrnm14p2fqrcb4vk67503zd0w51h8amcljg3p21wzkl"; depends=[packcircles sf]; }; cartogramR = derive2 { name="cartogramR"; version="1.0-9"; sha256="0j8xa11g3m9sp2vcx0z6lk6cpdd8f83r2qx1ibcz28h5s6nmvn69"; depends=[data_table sf]; }; + cartographer = derive2 { name="cartographer"; version="0.2.0"; sha256="0il0wc5mlz9qrb0lsbvcn4ha11wmm7hy40gbhvv86rfmh2jpp5nk"; depends=[cli dplyr rlang sf]; }; cartography = derive2 { name="cartography"; version="3.1.3"; sha256="1b0qj3sj6aycrxjh54and8r3nqdpcc1vi1m4ljhv8dy0f266kjn6"; depends=[classInt curl png raster Rcpp sf sp]; }; casabourse = derive2 { name="casabourse"; version="2.0.0"; sha256="1s7zp44cmfnq4l9rzydqpnv9s2z4v7bvng8diz3bhzkg2zhpglnq"; depends=[gsheet R_utils RJSONIO rvest]; }; + cascadeSelect = derive2 { name="cascadeSelect"; version="1.0.0"; sha256="1anvv35r2zpr4wxkpq95kry44x2c517hgygb1s24bsr5lk5q0f2c"; depends=[fontawesome htmltools reactR shiny]; }; caschrono = derive2 { name="caschrono"; version="2.3"; sha256="06q327cqa0hb0q60zyyj6r7ydcw9big597nwmmhb8px9j9d4pxdr"; depends=[Hmisc zoo]; }; cascsim = derive2 { name="cascsim"; version="0.4"; sha256="0n6frnbby1pjpx1z9lzxflmja2mg0dy99c5f7biakpaqi82x5xjb"; depends=[copula fitdistrplus moments R2HTML scatterplot3d]; }; caseMatch = derive2 { name="caseMatch"; version="1.0.8"; sha256="0bp2g0zzcspa6riinsa3bp1qwiip6z058hn2y5mw0w9xah8a685a"; depends=[]; }; casebase = derive2 { name="casebase"; version="0.10.3"; sha256="0my4vsirm4n8qd3b81ml1hkllimz41l0819njc92znfyg7y6pj63"; depends=[data_table ggplot2 mgcv survival VGAM]; }; + cases = derive2 { name="cases"; version="0.1.1"; sha256="16yfypaqjnl3b99a55mri2j55xaj7dixw76wbpbfa3s4y0zylwpz"; depends=[bindata boot copula corrplot dplyr extraDistr ggplot2 magrittr Matrix multcomp mvtnorm]; }; casino = derive2 { name="casino"; version="0.1.0"; sha256="07fphn46718gr1zm0xr43mwv7yk697xrc40lxxin315cf3gm0cka"; depends=[crayon dplyr ggplot2 magrittr purrr R6 tibble tidyr]; }; cassandRa = derive2 { name="cassandRa"; version="0.1.0"; sha256="0rwqzxbflxn1iyggm3mq6pkbl61mhk4vdwqwzlwrhrvvr2ib236r"; depends=[bipartite boot dplyr ggplot2 magrittr purrr reshape2 tidyr vegan]; }; cassowaryr = derive2 { name="cassowaryr"; version="2.0.0"; sha256="1gk54haciy3vj7xj6cji1v90xh7g8790zq1rykyispx09jr2dpx3"; depends=[alphahull dplyr energy ggplot2 igraph interp magrittr progress splancs tibble tidyselect]; }; - castor = derive2 { name="castor"; version="1.7.8"; sha256="1csni17xbwg8mk7iib2rlvgkx9zs50whmb1l4f54j5v5smr6cd8k"; depends=[Matrix naturalsort Rcpp RSpectra]; }; + castor = derive2 { name="castor"; version="1.7.10"; sha256="0mmbky96jffqp2hfa50v28g7qc0mhsylasc2cbf2b5rb454blckq"; depends=[Matrix naturalsort Rcpp RSpectra]; }; cat = derive2 { name="cat"; version="0.0-7"; sha256="1a5csycaddg7cmfn51sw520b9bbpp07a08hsi2f6lpzqiszhczj1"; depends=[]; }; cat2cat = derive2 { name="cat2cat"; version="0.4.6"; sha256="1hc656848fhkgdyi7jrnahyqfzlmkrbpinv89k169i46gvs6011x"; depends=[MASS]; }; catIrt = derive2 { name="catIrt"; version="0.5.1"; sha256="1wagk9f9mvf3b5yvwpas9yqjzpcp786d37wn71jj1af0khry8k62"; depends=[numDeriv]; }; @@ -7043,7 +7134,7 @@ in with self; { catch = derive2 { name="catch"; version="1.0.1"; sha256="1a63d1a6pzzirdzswngjj036jmg41hbiadwriws7k05qp95jdh6a"; depends=[MASS Matrix tensr]; }; catcont = derive2 { name="catcont"; version="0.5.0"; sha256="0ix6ipm3nn9aq5vxirjga2kwwfnxn4v8ggfjlg5v9027v2r8rb96"; depends=[dplyr]; }; catdap = derive2 { name="catdap"; version="1.3.5"; sha256="0fyhl69z2lznymvpzxra9qvcg85ggzkfjy68c6mzdmf1ja44d2k5"; depends=[]; }; - catdata = derive2 { name="catdata"; version="1.2.2"; sha256="14kx7yi0cv6dyh9wjasb8gn6cp1bhglgwql7dc2a7lqvdcp0d5vj"; depends=[MASS]; }; + catdata = derive2 { name="catdata"; version="1.2.3"; sha256="1d4zndlq2ngjhhqg9d6xi84ddfx262pl63gfw8qhq9m3w7z2dklx"; depends=[MASS]; }; cate = derive2 { name="cate"; version="1.1.1"; sha256="0wqfblyr7rjx9wnpbnv5lw2zv7nw3mbdjn866l1ng779vka1wdc5"; depends=[corpcor esaBcv leapp MASS Matrix ruv sva]; }; categoryEncodings = derive2 { name="categoryEncodings"; version="1.4.3"; sha256="0ns8ml2hm41650bi8yag6w3k9nb2ky43370444cgy3i7ajpzw87w"; depends=[data_table glmnet sparsepca]; }; catfun = derive2 { name="catfun"; version="0.1.4"; sha256="1482rll333fvy4h58f15flfs7qrck3vk9bzpdn3hayhnmc7svmma"; depends=[broom cli DescTools epitools Hmisc magrittr rlang]; }; @@ -7066,11 +7157,11 @@ in with self; { causaleffect = derive2 { name="causaleffect"; version="1.3.15"; sha256="1dyadjl941zback2jadsxi20a572gk1z7s6vrb432k2w65pdm2sv"; depends=[igraph]; }; causaloptim = derive2 { name="causaloptim"; version="0.9.7"; sha256="1p6qmxlyr907w7iwqarghwzir0am7w4wk1c9i8sgzy02yqssmagj"; depends=[igraph rcdd Rcpp shiny]; }; causalsens = derive2 { name="causalsens"; version="0.1.2"; sha256="1xy8nybflbw6hymc15mmz27ic6hcq89wryb8q6d4zi216lwv2nww"; depends=[]; }; - causalweight = derive2 { name="causalweight"; version="1.0.3"; sha256="1v1vmm5kfay3padkkr87yp5g539lqk5h3rl6w982glpqs8q80c59"; depends=[e1071 fastDummies glmnet hdm LARF mvtnorm np ranger SuperLearner xgboost]; }; + causalweight = derive2 { name="causalweight"; version="1.0.4"; sha256="0pm5m9gmjzfbh9zspj2asaa7fwhflfhi9j48132lsd5h09n7iwma"; depends=[checkmate e1071 fastDummies glmnet grf hdm LARF mvtnorm np ranger SuperLearner xgboost]; }; caviarpd = derive2 { name="caviarpd"; version="0.3.6"; sha256="0mzn7hh9n6r5qiqblraklawl3qcqpzmyfvnan3v174bhwyfxbj7v"; depends=[]; }; cba = derive2 { name="cba"; version="0.2-23"; sha256="18al5kavn3q2h6gl4s1hgxhy9ysv9fq602ffmzla251g380b166n"; depends=[proxy]; }; cbanalysis = derive2 { name="cbanalysis"; version="0.2.0"; sha256="0h0h8krlb6rckjpcw0jbbr8pcy3jm0cszimbm56l0ca668kiix06"; depends=[]; }; - cbcTools = derive2 { name="cbcTools"; version="0.2.0"; sha256="178yr5il556vsz52s22wp3jf11hx16kn4l62bdfl91n5d32crvcs"; depends=[fastDummies ggplot2 idefix logitr MASS randtoolbox rlang]; }; + cbcTools = derive2 { name="cbcTools"; version="0.3.2"; sha256="0kzrc279avwhzi4962p0s643slkdyxb6pzbcv56v15hkf2fx7mih"; depends=[dplyr fastDummies ggplot2 idefix logitr MASS randtoolbox rlang]; }; cbinom = derive2 { name="cbinom"; version="1.6"; sha256="1vi2kjlss4fmra1h8r6xgk4y66gzpdp61hcyzby2rqji93sib195"; depends=[Rcpp]; }; cbioportalR = derive2 { name="cbioportalR"; version="1.0.1"; sha256="01gfzghfww4dfc6sliy4vfxjghncchlyn1f37prbjbvfx921v7xp"; depends=[cli dplyr glue httr jsonlite magrittr purrr rlang stringr tibble tidyr]; }; cbl = derive2 { name="cbl"; version="0.1.3"; sha256="1wgc9nsc875s2h583gigh9hyr9d15dp35rnmb1znwqy11jrswbw3"; depends=[data_table foreach glmnet lightgbm]; }; @@ -7087,7 +7178,7 @@ in with self; { cchs = derive2 { name="cchs"; version="0.4.2"; sha256="18zk50g7rw8cb09fczpcdgzjl1b06rgf6lwy99sg7nq4scnzgzm8"; depends=[survival]; }; cchsflow = derive2 { name="cchsflow"; version="2.1.0"; sha256="1cnf1xcwz86nzzgk998m3icdvb799hnj7dzcmhv26gjvix1dqj2g"; depends=[dplyr haven magrittr sjlabelled stringr]; }; ccid = derive2 { name="ccid"; version="1.2.0"; sha256="0cmkkllcny53dayl74wqhphjznwj7nw7hvaj1fn6mlp6338h3rp8"; depends=[gdata GeneNet hdbinseg IDetect]; }; - cclust = derive2 { name="cclust"; version="0.6-25"; sha256="1pdvhfs8jfl0xz60s6h3qcmh973fp9h2ji8ps2fbc49da9xzsi2a"; depends=[]; }; + cclust = derive2 { name="cclust"; version="0.6-26"; sha256="0mwqna3751lff5n6bb0k09r7qwh0mpwdxgq68wd4wkl6l5akrv4j"; depends=[]; }; ccmEstimator = derive2 { name="ccmEstimator"; version="1.0.0"; sha256="1z53i7d2x1g93zskcyj93hxjyrvc9sjqmq887zaflwf22ikxvm6p"; depends=[]; }; ccmReportR = derive2 { name="ccmReportR"; version="0.1.0"; sha256="0jxxz26f0azp9xafqilvbbfhzn4ys8q4pf4c8bbnmwwbckmjajxm"; depends=[dplyr httr jsonlite keyring lubridate purrr rlang tibble]; }; ccmm = derive2 { name="ccmm"; version="1.0"; sha256="0855nr74xxpy7in2vrw15g8pv7nm1374irc1c5hikr5hadk5pf8v"; depends=[MASS]; }; @@ -7105,6 +7196,7 @@ in with self; { cdcsis = derive2 { name="cdcsis"; version="2.0.3"; sha256="0hv52valyig3zzywm3058c5nxb2n7y3j2vfibxdbfg8414wwapd9"; depends=[ks mvtnorm Rcpp]; }; cder = derive2 { name="cder"; version="0.3-1"; sha256="0h44yifiy0fqrmfpri0had1ps5d1jj1dgwllha5ng04rjwlvxpzz"; depends=[curl dplyr glue lubridate readr stringr]; }; cdfquantreg = derive2 { name="cdfquantreg"; version="1.3.1-1"; sha256="1qznl0csyh8l7kjr9i58lk0ifrfwkbp6zhrivb5kpg8mwsds9nv5"; depends=[Formula MASS pracma]; }; + cdgd = derive2 { name="cdgd"; version="0.3.1"; sha256="01v37bb12wqgm5dffylibasm6cadrqqnk41n9fzsmwk53w9zcijk"; depends=[caret]; }; cdlTools = derive2 { name="cdlTools"; version="0.15"; sha256="1p5d48v6nwlrgqqi0sg98zfhiycjcha6g12a7515xrvp6f5p28jn"; depends=[httr raster]; }; cdlei = derive2 { name="cdlei"; version="1.0"; sha256="1zsgryrwr1nqhcyizrh67lm953b87ih9l4rvc6i59s4vg2ph1ph1"; depends=[]; }; cdmTools = derive2 { name="cdmTools"; version="1.0.3"; sha256="05h0kz939ig0dxizij07r0xbjm668sk0744ji9k16090xcgz25hh"; depends=[combinat doSNOW foreach GDINA ggplot2 GPArotation psych sirt]; }; @@ -7118,23 +7210,23 @@ in with self; { cellKey = derive2 { name="cellKey"; version="1.0.1"; sha256="0dglb2a1hvbmld1pv6ysp80lql2hzvm76r748dxj93fj6i7lhmh8"; depends=[cli data_table digest ptable rlang sdcHierarchies sdcTable yaml]; }; cellOrigins = derive2 { name="cellOrigins"; version="0.1.3"; sha256="0nxhyz9bz0f598wpr10hm1d0zx83450xf9jkrl279v46x8sx36n4"; depends=[iterpc]; }; cellVolumeDist = derive2 { name="cellVolumeDist"; version="1.4"; sha256="1pbssq8zf1cmihs3fg5zgb3k876magxl84jld6vcfvvp76sxhr7l"; depends=[gplots minpack_lm]; }; - cellWise = derive2 { name="cellWise"; version="2.5.0"; sha256="1ls455d4y3mfkhz0g45qkhhd4jl7awipakcrsi87lskixzza73rr"; depends=[ggplot2 gridExtra matrixStats Rcpp RcppArmadillo reshape2 robustbase rrcov scales shape svd]; }; + cellWise = derive2 { name="cellWise"; version="2.5.2"; sha256="1yi0l4fwsjvbqaka5dlk1vb88i243w83ywn5qr2xm26nipk7b5cf"; depends=[ggplot2 gridExtra matrixStats Rcpp RcppArmadillo reshape2 robustbase rrcov scales shape svd]; }; cellpypes = derive2 { name="cellpypes"; version="0.1.3"; sha256="0wyf0p5x7dz8qy7xayp8n52cvk73fai13vzsknfk1qvs8wygnlfp"; depends=[cowplot dplyr ggplot2 Matrix rlang scales scattermore scUtils viridis]; }; cellranger = derive2 { name="cellranger"; version="1.1.0"; sha256="16fgi3annn34c3cxi0pxf62mmmmxi21hp0zzlv7bkfsjqy4g4f2x"; depends=[rematch tibble]; }; celltrackR = derive2 { name="celltrackR"; version="1.1.0"; sha256="08hbgpwcpf7v8l7qmszhjh0w4f4zjcizrdsxksihxpwdi9r4al3w"; depends=[ellipse pracma]; }; cem = derive2 { name="cem"; version="1.1.31"; sha256="1ylzsx2km9lf3x1rchwgs3nd8dzrac81f2jnd4qri35zvlilh1c6"; depends=[combinat lattice MatchIt nlme randomForest]; }; + cemco = derive2 { name="cemco"; version="0.2"; sha256="172raa62i34d1vzsgy84h3b7mmdzvg9h657fcmgrlhlkwqzx0gyl"; depends=[doParallel foreach MASS mclust mvtnorm nnet rootSolve]; }; cenGAM = derive2 { name="cenGAM"; version="0.5.3"; sha256="0qic2g2bq24k9jimxdk8g7bsmi4br2r6159ipdhh5ym81ji3sf5p"; depends=[mgcv]; }; cenROC = derive2 { name="cenROC"; version="2.0.0"; sha256="1rgs1h32jm7ls830f62gi5wdaqx3q2h4m4qirxqmv0pi8y5y2a9v"; depends=[condSURV icenReg Rcpp RcppEigen survival]; }; cencrne = derive2 { name="cencrne"; version="1.0.0"; sha256="1s5d6k01wlxs248wf9k77qxwnvaivxzsighsfdmd1hrf0klbwy5z"; depends=[MASS Matrix]; }; censCov = derive2 { name="censCov"; version="1.0-0"; sha256="0i9vmyi12f1m5xnrl4cxk3z9qv7ymzxsyf4gbnpg1ph63yfnhv3g"; depends=[survival]; }; censReg = derive2 { name="censReg"; version="0.5-36"; sha256="0r8pyscsw3m8lf6mx70sjk70k7i1jfjkk2qzq19m85q3byx447n6"; depends=[glmmML maxLik miscTools plm sandwich]; }; censable = derive2 { name="censable"; version="0.0.5"; sha256="15p4ggnkcddm2lglf798bcjghppx0pqzc8nyljyiw0hwsw14c7yg"; depends=[censusapi dplyr magrittr memoise purrr rlang sf stringr tibble tinytiger]; }; + censo2017 = derive2 { name="censo2017"; version="0.6.2"; sha256="0rj3a9i6faqsrx641p1nacdprfnzp8q45khpdrakmfnc7l40xh87"; depends=[cli crayon DBI duckdb httr purrr rstudioapi tibble]; }; censorcopula = derive2 { name="censorcopula"; version="2.0"; sha256="16pk4xlpliif02qznrhvl8qmrr6k4kknygqxcm83nsjxy6dcyga8"; depends=[copula]; }; - censored = derive2 { name="censored"; version="0.1.1"; sha256="1878791vrm564mvlw0cw4spls03y7vgyc9r1qcfq98diffm9cqln"; depends=[dials dplyr generics glue hardhat mboost parsnip prettyunits purrr rlang survival tibble tidyr]; }; - censusGeography = derive2 { name="censusGeography"; version="0.1.0"; sha256="1ncgd05ml571g3vy1g4p5xxg2bm08hbb6d5r3hpz7frn7w3l8l1d"; depends=[qdapTools]; }; + censored = derive2 { name="censored"; version="0.2.0"; sha256="1ps5f32047b1yyagk6v8b8p7wq7pi3nsygz2mmirbi0ps31d43l6"; depends=[dials dplyr generics glue hardhat lifecycle mboost parsnip prettyunits purrr rlang survival tibble tidyr]; }; censusapi = derive2 { name="censusapi"; version="0.8.0"; sha256="1wswd6kmb0fbyc3zs3q3dhhaa1la1z5alz4vg485ac9wacnab60r"; depends=[httr jsonlite]; }; censusr = derive2 { name="censusr"; version="0.0.4"; sha256="1n9571fyr46wj1dcxc2xgns9865655yzlq7yfz8im014wh0ycwqc"; depends=[dplyr httr stringr]; }; - censusxy = derive2 { name="censusxy"; version="1.1.1"; sha256="1gdry73xzcixa3hfchlf2xmmlnhk1vsg7k3axvynvlr493i7qf2a"; depends=[doParallel foreach httr]; }; censys = derive2 { name="censys"; version="0.1.0"; sha256="0r0yvaidn0qn96hx461415hywsjfgaz9wvvdssx7w97v2ndnk9sy"; depends=[httr jsonlite purrr stringi]; }; centiserve = derive2 { name="centiserve"; version="1.0.0"; sha256="1m6gqz2rk7023340laa5pc0ncbfka2qi9ajvh65fwijd7xvv3n5c"; depends=[igraph Matrix]; }; centralplot = derive2 { name="centralplot"; version="0.1.0"; sha256="1slzvbm1vvgj1gkcx9pb46fz8q55vfyqrxsvx4qzi5kp7d9h4dy2"; depends=[ggplot2]; }; @@ -7144,7 +7236,7 @@ in with self; { cepp = derive2 { name="cepp"; version="1.7"; sha256="01hvm6586xnb1crvk7brqh3dm2j44ia5lrl5swnf6pb682yskbq0"; depends=[randtoolbox trust]; }; cepreader = derive2 { name="cepreader"; version="1.2-1"; sha256="1aaphyvwi9lf8dl56ssq7fhzhh02fkgp4igi3cbr54b6zyv8nnks"; depends=[Matrix]; }; cequre = derive2 { name="cequre"; version="1.3"; sha256="1ichs89dlyy4npn04mm8z4713vfb94jhalcalfgsliwk51i0cnx2"; depends=[]; }; - ceramic = derive2 { name="ceramic"; version="0.6.0"; sha256="0n0l1b7gb05kqjrh696faq868q3nbwlg34y6wgr0w205kdq6qs17"; depends=[curl dplyr fs glue jpeg magrittr png purrr rappdirs raster reproj rlang slippymath sp spex tibble]; }; + ceramic = derive2 { name="ceramic"; version="0.8.0"; sha256="03hjvqj7j0c0kg1jdxl4vr5rlrb4kvpakz223r7nf95f4gnnhcz9"; depends=[crsmeta curl dplyr fs glue purrr rappdirs rlang slippymath sp stringr terra tibble vapour wk]; }; cesR = derive2 { name="cesR"; version="0.1.0"; sha256="1sw5is461mrylmd8f9qzps368wilrgy41k6cmig445261zzqkikr"; depends=[dplyr haven labelled readr tidyr]; }; ceser = derive2 { name="ceser"; version="1.0.0"; sha256="1k2k2gykyajlahl7xvpxdla0ghapdxl24yi575pgq2421fpxq2i4"; depends=[dplyr lmtest magrittr purrr tibble]; }; cetcolor = derive2 { name="cetcolor"; version="0.2.0"; sha256="0kygdcr9ldanr0z4qpygwh0padki7s2ad0j6myky601g4228z79q"; depends=[]; }; @@ -7154,7 +7246,7 @@ in with self; { cfda = derive2 { name="cfda"; version="0.10.1"; sha256="0v81wgqkp48gf11nxpg1dfj93qk55n8d7mfc1cyymkkhxzzdar44"; depends=[diagram fda ggplot2 mgcv msm pbapply]; }; cfdecomp = derive2 { name="cfdecomp"; version="0.4.0"; sha256="0g61gpihk5kbbrqzn15fqjv3bawsq1vq3sdssbzs5j96afmf2aq8"; depends=[]; }; cffdrs = derive2 { name="cffdrs"; version="1.8.20"; sha256="0x2gzqcif79hkrchx50j5yvxwwpgv8g8bxisfsa1xd7sja609hw7"; depends=[data_table doParallel foreach geosphere raster rgdal]; }; - cffr = derive2 { name="cffr"; version="0.4.1"; sha256="1zhb6dnmrlnsp3wzm8bs3z6gl09b62x3cs4v6rv2l9fp6j4nyisq"; depends=[cli desc jsonlite jsonvalidate yaml]; }; + cffr = derive2 { name="cffr"; version="0.5.0"; sha256="0cx1fzhy190fbk4sk1a9c3rh2dli0b9r2q6h5wqm4dmv6ks4banx"; depends=[cli desc jsonlite jsonvalidate yaml]; }; cfid = derive2 { name="cfid"; version="0.1.4"; sha256="1jd66vy71b5y4ng4k5ln08cm0pa1xrzd9in1l4d1qq4cnw5qa724"; depends=[]; }; cfma = derive2 { name="cfma"; version="1.0"; sha256="006z5g3rqpg44jqdf6ivyxr47sxm5cd9cqhayfi8qk73xx5w4lv9"; depends=[]; }; cfmortality = derive2 { name="cfmortality"; version="0.3.0"; sha256="0dgwv89fzylznc6jr41ixzfs1gfs3np4gf46bk6pcd09l1kbx3lc"; depends=[]; }; @@ -7164,7 +7256,7 @@ in with self; { cgAUC = derive2 { name="cgAUC"; version="1.2.1"; sha256="172f9rkfhv4xzwpw8izsnsdbcw9p3hvxhh0fd8hzlkil7vskr3k8"; depends=[Rcpp]; }; cgaim = derive2 { name="cgaim"; version="1.0.0"; sha256="0bi8rmykgynkkbpkvm3n9ihl8x41n4msgz17ilwpa1xw9lf3pcj6"; depends=[cgam coneproj doParallel foreach gratia limSolve MASS Matrix mgcv osqp quadprog scam scar TruncatedNormal]; }; cgal4h = derive2 { name="cgal4h"; version="0.1.0"; sha256="0ghcwjfqlhqysnl8mgz6zp7dyqh8pvnpvphwjwk6zqi24n3nhac2"; depends=[]; }; - cgalMeshes = derive2 { name="cgalMeshes"; version="1.0.0"; sha256="0580yf3sy7xxs629zhdl16agawfm7db7zvdi99a0sr0ab9h7nhj3"; depends=[BH data_table R6 Rcpp RcppCGAL RcppEigen rgl]; }; + cgalMeshes = derive2 { name="cgalMeshes"; version="2.1.0"; sha256="1xykd56ms3ah6wgnndy5f0chmhiy3zcqs8i725rbzfn6a3aqrb4b"; depends=[BH data_table onion R6 Rcpp RcppCGAL RcppColors RcppEigen rgl]; }; cgam = derive2 { name="cgam"; version="1.20"; sha256="0mrd574zyajs46wgdyyly3vxpbpnvp5p8m4n1hsqyrjn6ba3lws4"; depends=[coneproj lme4 Matrix statmod svDialogs]; }; cglasso = derive2 { name="cglasso"; version="2.0.6"; sha256="1pfrrm7pkg31c0y7rnxy3h1brqksbqif8xkd2qx2kjnz5vh279ai"; depends=[igraph MASS]; }; cglm = derive2 { name="cglm"; version="1.1"; sha256="1r3wrds5lbirzzqsi12prwykxa5361jb95pq7j95nlp6y8kcb94j"; depends=[data_table nleqslv Rcpp RcppArmadillo]; }; @@ -7187,18 +7279,20 @@ in with self; { chantrics = derive2 { name="chantrics"; version="1.0.0"; sha256="0123mbdr4bkkp8w9w15bg9qxkbpd6nyp602fw690zsy1dyimm78k"; depends=[AER chandwich lmtest progress purrr rlang sandwich]; }; charlatan = derive2 { name="charlatan"; version="0.5.0"; sha256="1acig89x3lzq5q0x8dvwpjgcy9ix6f2s5y0qq4y2mrwzk6bk40jh"; depends=[R6 tibble whisker]; }; chartql = derive2 { name="chartql"; version="0.1.0"; sha256="108csn7q8qrjhiss54f5bliv3av7psq7kfryspajbdb6wm9ciz3p"; depends=[ggplot2 stringr]; }; - chatgpt = derive2 { name="chatgpt"; version="0.2.2"; sha256="03iiamxh4njqhch56s70hp5r6c08xgs99hqnngiigbpck38i9sbq"; depends=[clipr httr jsonlite miniUI rstudioapi shiny]; }; - cheatsheet = derive2 { name="cheatsheet"; version="0.1.1"; sha256="0pyvlpgfn2jh7asnc4dqd85b6q95hwv0m04a2x710jwnwp269297"; depends=[cli crayon fs git2r magrittr purrr rstudioapi]; }; + chatgpt = derive2 { name="chatgpt"; version="0.2.3"; sha256="1a71rzim5x40lnb7pc5n0b9j56kg96cjw7x4liqkbn84n61db6ff"; depends=[clipr httr jsonlite miniUI rstudioapi shiny]; }; + cheatsheet = derive2 { name="cheatsheet"; version="0.1.2"; sha256="0nhyz354hxnqbs3iwvaisssr4ciq6vary3ldkm8yanpdyw0p1k27"; depends=[cli crayon fs git2r magrittr purrr rstudioapi]; }; checkLuhn = derive2 { name="checkLuhn"; version="1.1.0"; sha256="1s1ix5n98bcbzcvrz5h19sk9pchdvrhpy3ppmw96ys8vylzm58mv"; depends=[dplyr stringr]; }; checkarg = derive2 { name="checkarg"; version="0.1.0"; sha256="0rkdjs2c4yx9laqgayxz57bwxhwgdh6ndrr4i3b1kh31lcmk1xc6"; depends=[]; }; checkdown = derive2 { name="checkdown"; version="0.0.7"; sha256="1bjij565vss2x8xbgq5qxx1d1snfw9wnphj0jhbm6vxxh2hg6g46"; depends=[knitr markdown]; }; - checker = derive2 { name="checker"; version="0.1.2"; sha256="0ypjx9xivjf114hv9pqk9ldixvjqdqdxj1vlf11xq6vsc3lr6g2j"; depends=[cli rstudioapi yaml]; }; - checkmate = derive2 { name="checkmate"; version="2.1.0"; sha256="1ii11lypfz8qwswaiagaxnfq6wqkg3cq4j7k9q40sdd0cd8xv15p"; depends=[backports]; }; + checker = derive2 { name="checker"; version="0.1.3"; sha256="1n9gwgbkr2h6gna7nj18nv8bj2f9i2zyp407f4c4vj6f1pzj00ik"; depends=[cli rstudioapi yaml]; }; + checkmate = derive2 { name="checkmate"; version="2.2.0"; sha256="064i6l0n4w4jncpnk5wnj6sxak0jirdz757iirglcxg8ayq19v4n"; depends=[backports]; }; checkpoint = derive2 { name="checkpoint"; version="1.0.2"; sha256="1987vn13b5j914vkzwbn7q1138b0xsjs55x5b2090kjk6kc900x8"; depends=[jsonlite pkgdepends withr yaml]; }; checkr = derive2 { name="checkr"; version="0.5.0"; sha256="14hkpfbw5ibdwz2jygir2f2bb2qgrj62gn3449n4dif31nswaj2f"; depends=[err]; }; cheddar = derive2 { name="cheddar"; version="0.1-638"; sha256="0y1kmm14f7fkxxyjvxiavzcy2bfflwp98yx7z98ib0v7dnn86vmx"; depends=[]; }; + cheem = derive2 { name="cheem"; version="0.3.0"; sha256="0l3arxxkg6rzkilklcmn61rl1j33yxcgbikj6mk5laqhhii3rqqp"; depends=[conflicted DT ggplot2 magrittr plotly shiny shinycssloaders shinythemes spinifex]; }; cheese = derive2 { name="cheese"; version="0.1.2"; sha256="0g935mlf2hkbhd8cif8nmvg477if8sv7ga50ddb0cvghdaqjd183"; depends=[dplyr forcats kableExtra knitr magrittr purrr rlang stringr tibble tidyr tidyselect]; }; chemCal = derive2 { name="chemCal"; version="0.2.3"; sha256="0f0d0ljym745scnfdx0n0jp86g4r51gylcab3h7ykpaizgpah24r"; depends=[]; }; + chemdeg = derive2 { name="chemdeg"; version="0.1.2"; sha256="0ipj7988bwrcz489wa5mx789aw9dij6003rbdndbl3m2r3hi9pnv"; depends=[MASS]; }; chemmodlab = derive2 { name="chemmodlab"; version="2.0.0"; sha256="01af0j24vymxiqahwhcf4kp0x603yllvlgcxnybsi2wnzm71swk7"; depends=[caret class e1071 elasticnet KernSmooth lars MASS MSQC nnet pls pROC randomForest rpart tree]; }; chemodiv = derive2 { name="chemodiv"; version="0.2.0"; sha256="1i9ypq045bmh8sw5sz92hlyv9gbdrwdg1rv4nhg8myvx9nrv1zwx"; depends=[ape ChemmineR curl fmcsR ggdendro ggplot2 ggraph gridExtra GUniFrac hillR httr igraph jsonlite rlang tidygraph tidyr vegan webchem]; }; chemometrics = derive2 { name="chemometrics"; version="1.4.2"; sha256="0shqns0n964pfwnd0q5sadglrlpgs4g5fbv45fsj9p37l4pq61dp"; depends=[class e1071 lars MASS mclust nnet pcaPP pls robustbase rpart som]; }; @@ -7217,8 +7311,8 @@ in with self; { chipPCR = derive2 { name="chipPCR"; version="1.0-2"; sha256="0q30ncnvbipvqbpxrx2yb68i2ybdfl1fbzj3f12dd2wmjjl72q1x"; depends=[lmtest MASS outliers ptw quantreg Rfit robustbase shiny signal]; }; chirps = derive2 { name="chirps"; version="0.1.4"; sha256="1yj91rvcsfsr2nmvk7qnxwfkbiblm4bdazs2p83g8ax4fwkrp39c"; depends=[httr jsonlite sf terra]; }; chisq_posthoc_test = derive2 { name="chisq.posthoc.test"; version="0.1.2"; sha256="0lvj3jqhaj1ijjpzvpq3fn3a1y3fgv69pxh91j6k958pn6vmp40i"; depends=[]; }; - chisquare = derive2 { name="chisquare"; version="0.3"; sha256="1cfarwvzz20f7sxbjhlxzrkg2p9vf51v4m50j96vwdlz4ng4cr5m"; depends=[gt]; }; - chk = derive2 { name="chk"; version="0.8.1"; sha256="0nw3aj8sbd2x8rsvpglsiavk7kivd330mgx676k46m7lhhj7nmpw"; depends=[lifecycle rlang]; }; + chisquare = derive2 { name="chisquare"; version="0.4"; sha256="02yj8j7hn93yshz73kxwsf4yzkidf6mp9z3v7n3cqrvk03xx7zkx"; depends=[gt]; }; + chk = derive2 { name="chk"; version="0.9.0"; sha256="1fj9rqvxv0s2j5sikmkn18280w4194kx5hlkah9z0hr4vnzgkrh7"; depends=[lifecycle rlang]; }; chkptstanr = derive2 { name="chkptstanr"; version="0.1.1"; sha256="0p0pzpzyg3sw4gnvzdx34f96yxidpykq49v5xlhnrsnpjzajjfs3"; depends=[abind brms Rdpack rstan]; }; chlorpromazineR = derive2 { name="chlorpromazineR"; version="0.2.0"; sha256="0w7v6xk3vyf9dyf9bh5v9516v78yhcdvy7h1140pg2yw8xmfyr0r"; depends=[]; }; chngpt = derive2 { name="chngpt"; version="2023.1-30"; sha256="15n82vgqqbvxpdiq42zja352nlj39avwfzv4l0v98jnl8pjwbkzw"; depends=[boot kyotil lme4 MASS RhpcBLASctl survival]; }; @@ -7236,7 +7330,7 @@ in with self; { chromoMap = derive2 { name="chromoMap"; version="4.1.1"; sha256="1067h5d6jdbm811n7ayikhqfbcqmxbz5jgp05vf1sbln7qgn9l43"; depends=[htmltools htmlwidgets]; }; chromote = derive2 { name="chromote"; version="0.1.1"; sha256="0aa9lsnvcq25xd7hk2n33vlrvihad7943x9fda891adjvsnjg57q"; depends=[curl fastmap jsonlite later magrittr processx promises R6 rlang websocket]; }; chromseq = derive2 { name="chromseq"; version="0.1.3"; sha256="0m9dnm50iw176ffn6syd3538hxmjhkrxfzaf13210q100wk0lgz2"; depends=[]; }; - chron = derive2 { name="chron"; version="2.3-60"; sha256="1vlifh316q76g4015126am158i702mi88xjpzj3ylv2vqp77a1hf"; depends=[]; }; + chron = derive2 { name="chron"; version="2.3-61"; sha256="16rvqkb7c969795d1z1ypb2cfly70zp24qs8ndsq0hx04mv9b5m0"; depends=[]; }; chronicle = derive2 { name="chronicle"; version="0.3"; sha256="0yfrxr93fbxgpxjs1gb56pdx1kk4nn9xvy2csgl1rhzrgbl343m3"; depends=[data_table dplyr DT dygraphs ggplot2 glue knitr magrittr plotly prettydoc purrr readr rlang rmarkdown rmdformats scales skimr viridis zoo]; }; chronicler = derive2 { name="chronicler"; version="0.2.1"; sha256="1ds9gi0wgdsi4rw3zpn14pnisallj6vvzlzhsl4hzlvj3k96v5df"; depends=[clipr diffobj dplyr maybe rlang stringr tibble]; }; chronochrt = derive2 { name="chronochrt"; version="0.1.2"; sha256="0r8aqx74c4rxacqf47hinpf5fy3lypxd5a1g7iqb1rbk1z4mkfj6"; depends=[dplyr ggplot2 magick magrittr readr rlang tibble tidyr tidyselect]; }; @@ -7245,6 +7339,7 @@ in with self; { chunked = derive2 { name="chunked"; version="0.6.0"; sha256="1j16am4nzwy2ckisksl5mk8h05ala6lpdd5qrb1gwyrhli4lx45a"; depends=[DBI dplyr LaF progress rlang]; }; chunkhooks = derive2 { name="chunkhooks"; version="0.0.1"; sha256="1kps7widb9ql01njy8xl03lplrybl2ci5fvx5vzzwnwps6s4y3fm"; depends=[knitr measurements prettyunits]; }; chyper = derive2 { name="chyper"; version="0.3.1"; sha256="0ps66gqngi38lz8sq4zsvdbmj0qn4pz8aax9dgmngmwb8hdd503r"; depends=[]; }; + ciCalibrate = derive2 { name="ciCalibrate"; version="0.42.2"; sha256="1pgfc63w50isqmzdpzbind8qdj9h2q3njiwchxb0a95zgycgyydi"; depends=[lamW]; }; ciTools = derive2 { name="ciTools"; version="0.6.1"; sha256="0d6aq4wcxi1q59g4kfx49x1li41rfwx2z2v4xzz2xkldn6h1794z"; depends=[arm boot dplyr lme4 MASS survival]; }; ciccr = derive2 { name="ciccr"; version="0.2.0"; sha256="0xmjqwlw2xq332pyagrn8ay6ipyvmxw1q7zf4cza4ly2mz9mf1ws"; depends=[]; }; cicerone = derive2 { name="cicerone"; version="1.0.4"; sha256="1z3i720970kmczg01wxwbyqwd9zby69lchw3pgqwpn2bjr66jimh"; depends=[assertthat R6 shiny]; }; @@ -7256,7 +7351,7 @@ in with self; { cinaRgenesets = derive2 { name="cinaRgenesets"; version="0.1.1"; sha256="0pz3iw559d8rsxmnwd1cqcpv8qnnh9bfvc9ydzwznx8jczbldls8"; depends=[]; }; cinterpolate = derive2 { name="cinterpolate"; version="1.0.0"; sha256="1aw6hs41xin2hhgmi4pr5510v4sn6x735lachpc5gpbxch5h3f82"; depends=[]; }; cipheR = derive2 { name="cipheR"; version="1.0.0"; sha256="01h8mh2xlz1kkwm3nbiw8lpjlkjc19x5x8dq1yxfwdkq5yjjkyaa"; depends=[]; }; - cir = derive2 { name="cir"; version="2.3.0"; sha256="10fjz4rqymib97rw38rb0w5qaq6hsd986p6mxv1mcp4czalqf1yn"; depends=[]; }; + cir = derive2 { name="cir"; version="2.3.1"; sha256="0bgza663rynx2b2p00phfz806cwf2m30yjkqzk2s23hbc47hx9qs"; depends=[]; }; circacompare = derive2 { name="circacompare"; version="0.1.1"; sha256="15vpnh20wni2wmp86xql9737kbxbi28s9a4pi3rihr1w5mcgqfaj"; depends=[ggplot2]; }; circle = derive2 { name="circle"; version="0.7.2"; sha256="0nn14ky8df8ra03sh9ds7lkcksf9lysc1981dh19pca7iqbdydkx"; depends=[cli httr jsonlite]; }; circletyper = derive2 { name="circletyper"; version="1.0.2"; sha256="0j2c369icz864fjgd393wbvv1shmrwgvcqfzwps778lzv59f869h"; depends=[shiny]; }; @@ -7268,29 +7363,29 @@ in with self; { citation = derive2 { name="citation"; version="0.8.2"; sha256="0s6hsxfa72apslp4prfl2b9n1ybvsynlh69772rh9x0niysgm43g"; depends=[desc jsonlite withr yaml]; }; citationchaser = derive2 { name="citationchaser"; version="0.0.4"; sha256="11ilh8fpqvljzriwwkzmw5idxff82spyv4b36lsl1s0lfbgjis69"; depends=[data_table dplyr httr jsonlite maditr MESS networkD3 scales tibble]; }; citecorp = derive2 { name="citecorp"; version="0.3.0"; sha256="0lqxa6qfysrk3rpg9fnsxhrfsd0qsbfxhc3b43090fhlxq9gk3wm"; depends=[crul data_table fauxpas jsonlite]; }; - cities = derive2 { name="cities"; version="0.1.1"; sha256="14wrv5pgzb0mf23ipp2j8d1ca73pgl5010h7qfkmgaxfvmn9j4yq"; depends=[dplyr ggplot2 ggthemes plotly tidyr]; }; + cities = derive2 { name="cities"; version="0.1.2"; sha256="06xpf5knqdywscy678902ax5wqzbrxr5lh7y3n25c1z4jm1vgag9"; depends=[dplyr ggplot2 ggthemes plotly tidyr]; }; cito = derive2 { name="cito"; version="1.0.1"; sha256="0j1h8l50kkhrpnpynxw0hhm41k0rhd4f4i9aiv7bbhbkfh71xk7n"; depends=[checkmate coro gridExtra torch]; }; citrus = derive2 { name="citrus"; version="1.0.2"; sha256="1pzzyppqfh3qvc1xi2947lnshv7z2c21r8fribhc1avj76j26q5y"; depends=[clustMixType dplyr GGally ggplot2 RColorBrewer rlang rpart rpart_plot stringr tibble treeClust]; }; ciu = derive2 { name="ciu"; version="0.6.0"; sha256="0pqs8ivbybbrjar978bl05awgaks33nqfm7l9z68iv2sj4a9hv21"; depends=[crayon ggplot2 Rcpp]; }; ciuupi2 = derive2 { name="ciuupi2"; version="1.0.1"; sha256="04x02qmqqyrc4h4z4mpl4zn5vr9y28k6j6n30fbr9q238zd543db"; depends=[functional nloptr pracma PreciseSums statmod]; }; civis = derive2 { name="civis"; version="3.1.2"; sha256="0ahrav9gd0dy05vxapg5x0csadwcnm4nfcwwk752j9nksd1hl3wg"; depends=[future httr jsonlite memoise]; }; cjar = derive2 { name="cjar"; version="0.1.2"; sha256="0rq9ryhp2h3p927227chzwbjn7x22h9ckkha2kclhx0jh7swf5y7"; depends=[assertthat dplyr glue httr jose jsonlite lubridate magrittr memoise openssl progress purrr R6 rlang stringr tibble tidyr vctrs]; }; - cjbart = derive2 { name="cjbart"; version="0.2.2"; sha256="11ml35q1vjc696n6pwpbhzhf6g9r62l1yahbwkqbyd1jnkhpxmw4"; depends=[BART ggplot2 randomForestSRC Rdpack rlang tidyr]; }; + cjbart = derive2 { name="cjbart"; version="0.3.0"; sha256="0xqyzzvlfda5ykrkxvj6srp6p86jh97f0kfqkln3l4fb2hz6nnnp"; depends=[BART ggplot2 randomForestSRC Rdpack rlang tidyr]; }; cjoint = derive2 { name="cjoint"; version="2.1.0"; sha256="1bs380ji9vsc1d77wqhl0ij9xblww3g9x3hiwpcpz26wihqcx7ac"; depends=[DT ggplot2 lmtest Matrix sandwich shiny shinyBS shinyjs survey]; }; ckanr = derive2 { name="ckanr"; version="0.7.0"; sha256="10bxlvx70wik3rih5ms8jb9nb111qca4ydz8rj2raywm8bd3rpcj"; depends=[crul DBI dbplyr dplyr jsonlite magrittr]; }; clValid = derive2 { name="clValid"; version="0.7"; sha256="18aiyjhnh5mfdxbzns4cy0r8bymfikhwkybpn4g04qhli5ls8z83"; depends=[class cluster]; }; cladoRcpp = derive2 { name="cladoRcpp"; version="0.15.1"; sha256="0msay6yvm6wc964gwrz31ky5w4mizakji3j6rpkydz0zlrl52v1j"; depends=[Rcpp RcppArmadillo]; }; clam = derive2 { name="clam"; version="2.5.0"; sha256="16yq457a2c8d47szimad7rx0q31h0g7iirmb75xxjicvkxqprmaz"; depends=[rintcal]; }; - clampSeg = derive2 { name="clampSeg"; version="1.1-1"; sha256="1zrndnd8n7ssn2fm0l7y31a2la0nsybqsl4j44r0mmc1m0m94vks"; depends=[lowpassFilter stepR]; }; + clarabel = derive2 { name="clarabel"; version="0.4.1"; sha256="1vdv9k6kzpvfkq9mnriafzs6ig0nfllbpjyg91dw3sbbzw22pxhn"; depends=[]; }; clarifai = derive2 { name="clarifai"; version="0.4.2"; sha256="0igi4xl27nz0r85hpws2zfc2gn5z2nmywp3saxgp74mh2y99lg6s"; depends=[curl jsonlite]; }; - clarify = derive2 { name="clarify"; version="0.1.2"; sha256="05p7ch6k85i9j7hx7iz177zmrh6xm9n4qfl21872n070bj8f05hh"; depends=[chk ggplot2 insight marginaleffects mvnfast pbapply rlang]; }; + clarify = derive2 { name="clarify"; version="0.1.3"; sha256="09mspawbv5nnbh95nkl0val3kd5fd2vgyxkm1an9n45xjpbq3x55"; depends=[chk ggplot2 insight marginaleffects mvnfast pbapply rlang]; }; clarkeTest = derive2 { name="clarkeTest"; version="0.1.0"; sha256="0vbb3j9rnh42qyp78a4jykp7p560d0ryfp28xgvxax8h8hr80457"; depends=[]; }; - class = derive2 { name="class"; version="7.3-21"; sha256="1pydmsy4glvdbvm8ci76br69qhlfgjq8irwm4jk63nnjli54068c"; depends=[MASS]; }; + class = derive2 { name="class"; version="7.3-22"; sha256="0p6i10jk8mb85bkx4lvixw85lsmgnk4cizcdw33zqhrqx5j436dn"; depends=[MASS]; }; classGraph = derive2 { name="classGraph"; version="0.7-5"; sha256="19jb9jr1gfg4karymrbilh0zjrlsczhy2q03x5b0jxnh4ykhxfj8"; depends=[graph Rgraphviz]; }; classInt = derive2 { name="classInt"; version="0.4-9"; sha256="1hz1436apcnqvfyhmlv5f4127jviwfw6hz7f8xxkqygq11ysy4av"; depends=[class e1071 KernSmooth]; }; classifierplots = derive2 { name="classifierplots"; version="1.4.0"; sha256="0agxm3vrbs8lqhk1xvfc3wzf0q0hxhgyp23j5qi5mi1drgnw1jj1"; depends=[caret data_table ggplot2 gridExtra png Rcpp ROCR]; }; classifly = derive2 { name="classifly"; version="0.4.1"; sha256="195pa9g8764m8ddkz7wwzszh2zqqnx2fm7cdsm9q73k6qgf61xj8"; depends=[class plyr]; }; - classmap = derive2 { name="classmap"; version="1.2.0"; sha256="0f5b1hx1n72042kkzkl4n9vr2w7q1pc1ivl0n907k4a7jzi3q63k"; depends=[cellWise cluster e1071 ggplot2 gridExtra kernlab randomForest robustbase rpart]; }; + classmap = derive2 { name="classmap"; version="1.2.3"; sha256="125895ym1jhdd4gm7ywlhfzn66kra1a8bbkq3502vg38zvdsm3ci"; depends=[cellWise cluster e1071 ggplot2 gridExtra kernlab randomForest robustbase rpart]; }; cld2 = derive2 { name="cld2"; version="1.2.4"; sha256="0nv17v1sjdx4xballagm5cfafswj4bqc0h550q29hal16vl4vq3r"; depends=[Rcpp]; }; cld3 = derive2 { name="cld3"; version="1.5.0"; sha256="075v7jw9x4pbg8p2kfjdw3rr7bw21lci97l44xmngka3lr6c25vj"; depends=[Rcpp]; }; clda = derive2 { name="clda"; version="0.1"; sha256="03zfanvpz1h42h2z38a63fck1p5hqig4w2svknzpw7mryji5q9b1"; depends=[MASS]; }; @@ -7301,7 +7396,7 @@ in with self; { cleandata = derive2 { name="cleandata"; version="0.3.0"; sha256="1lm7k25j16p888xvd7rzzd3sb3namzjlpjn22xmmpzlzyl0h7dhk"; depends=[]; }; cleaner = derive2 { name="cleaner"; version="1.5.4"; sha256="1rkyrp8pa5sznjszxfwgkiymmdwrm87k56ghgk39yp8f919ifkpl"; depends=[backports crayon knitr pillar rlang vctrs]; }; cleangeo = derive2 { name="cleangeo"; version="0.2-4"; sha256="0yynf5d2lbz6329brzcnjm91rg6is60h2xlavz73lfxx3v549dy3"; depends=[maptools rgeos sp]; }; - cleanrmd = derive2 { name="cleanrmd"; version="0.1.0"; sha256="168aqns21rf0svjrbv8pn66vcvbka8zsjlfp8zn0qgyl2pfp4ajj"; depends=[htmltools jsonlite rmarkdown]; }; + cleanrmd = derive2 { name="cleanrmd"; version="0.1.1"; sha256="120jg8kp6m6pka5nvgvwjyl4ljybv193sqvyjr8p19w3q7665nm6"; depends=[htmltools jsonlite rmarkdown]; }; clespr = derive2 { name="clespr"; version="1.1.2"; sha256="1993kd70w48a110im47vcpll0c6nfrm7m33r6l8rzgwnpsmcls8g"; depends=[AER clordr doParallel foreach magic MASS pbivnorm survival]; }; clevr = derive2 { name="clevr"; version="0.1.1"; sha256="077qhqfzcy1ciar70df7q98ms003b9mnqgji1nxkx5ncw9hdkzd4"; depends=[BH Matrix Rcpp]; }; clhs = derive2 { name="clhs"; version="0.9.0"; sha256="04hd0p51j15294fv1a9qx61p5yfmh8hcx784v3x1s0kx7km34saz"; depends=[cluster ggplot2 plyr raster Rcpp RcppArmadillo reshape2 sf sp]; }; @@ -7316,11 +7411,10 @@ in with self; { clifford = derive2 { name="clifford"; version="1.0-8"; sha256="0gi4jajng1v0a45dl5qv8v279bm4lzfbkdsqp0bd1vil2ns1934j"; depends=[BH disordR magrittr mathjaxr partitions Rcpp]; }; clifro = derive2 { name="clifro"; version="3.2-5"; sha256="1p2xy5r9axkj8yk6ywaq0w5i00bdfm15drjz227nx8p4vd3q6si8"; depends=[ggplot2 httr lubridate magrittr RColorBrewer reshape2 rvest scales stringr xml2]; }; clikcorr = derive2 { name="clikcorr"; version="1.0"; sha256="0zdnbcl5q293mmm6pbn4ri7p1q6z6sff74axsb3nyd153v2xamr5"; depends=[mvtnorm]; }; - climaemet = derive2 { name="climaemet"; version="1.1.0"; sha256="17wi11f0xw1sz70sdl40rvxkb1crlyb4pz656v6v5kan5zxrf7lf"; depends=[dplyr ggplot2 httr jsonlite rappdirs readr rlang tibble tidyr]; }; + climaemet = derive2 { name="climaemet"; version="1.1.1"; sha256="17g55shqsgpv9vpm41r5lc7ihqhfqj0phbsgv9ghpql9z1nxjy19"; depends=[dplyr ggplot2 httr jsonlite rappdirs readr rlang tibble tidyr]; }; climateStability = derive2 { name="climateStability"; version="0.1.4"; sha256="0cnp67dskwlw60lzknh3nfx2raj90zk6z1bng8l1blsgmap565dd"; depends=[terra]; }; - climatol = derive2 { name="climatol"; version="3.1.2"; sha256="0p3nk4n7izj0cmmqd9apa1gix5lfdzp08ydy0n7rkl5kbkmrkb6n"; depends=[mapdata maps]; }; + climatol = derive2 { name="climatol"; version="4.0.0"; sha256="0hz5j9wg3c2bd2v4q0mv01v7wwd6v650fbcvrl4zqxd9w55kmggs"; depends=[]; }; climatrends = derive2 { name="climatrends"; version="0.5"; sha256="0b2afsff0yl2rcvff5mi6zz5xls9k9hzpay041mv11wc7ii8bw27"; depends=[nasapower]; }; - climdex_pcic = derive2 { name="climdex.pcic"; version="1.1-11"; sha256="01ax0kas43g3h21ixzc80f9gl4m9846gmk8v48rr0gkhcmbcc6jx"; depends=[PCICt Rcpp]; }; clime = derive2 { name="clime"; version="0.5.0"; sha256="15xc4cvllf6qpwa8a0lvsbivx4cricbgn0v3wc70xy69ngfa7zaj"; depends=[lpSolve]; }; climetrics = derive2 { name="climetrics"; version="1.0-11"; sha256="1a6ypx15h806aq1h3py40lrzrwcsg61jvgbdrfqyl347yw3sl327"; depends=[raster rts sp terra xts yaImpute zoo]; }; climextRemes = derive2 { name="climextRemes"; version="0.3.0"; sha256="0c3zh64pipdq5266g8p6c6h0qdwfmigfh6s63ljqvr1ysv32k57g"; depends=[boot extRemes]; }; @@ -7339,7 +7433,7 @@ in with self; { clipr = derive2 { name="clipr"; version="0.8.0"; sha256="1s9vvv3cxnz8w11gsi8z9ddv9jzib5qf5qqxnwqrrv7vj8cr7hij"; depends=[]; }; clisymbols = derive2 { name="clisymbols"; version="1.2.0"; sha256="1q7gi2zmykhzas9v8fdnbpdq7pzdcpbhim1yxvd2062l777g4j86"; depends=[]; }; clmplus = derive2 { name="clmplus"; version="0.1.0"; sha256="0flnrfs5ymz0ki85zcwmdg605xyfpdc73c71xk35q0ak7l7mbz44"; depends=[ChainLadder forecast ggplot2 gridExtra reshape2 StMoMo]; }; - clock = derive2 { name="clock"; version="0.6.1"; sha256="00hp7k24d599dzkzhhb6xky2pj6xaggdfwgviyb3i592v1gkh37q"; depends=[cpp11 rlang tzdb vctrs]; }; + clock = derive2 { name="clock"; version="0.7.0"; sha256="0x58xhngpd2rj7da9gr1x1zwz4rliza7aakfadkqsc4c7wxpmral"; depends=[cli cpp11 lifecycle rlang tzdb vctrs]; }; clockify = derive2 { name="clockify"; version="0.1.2"; sha256="039kwx468f9hx1w3nxxay8kvai3n2x63r9w10q20mklz5wx4xi3q"; depends=[anytime dplyr httr janitor logger lubridate purrr rlist tibble tidyr]; }; clogitL1 = derive2 { name="clogitL1"; version="1.5"; sha256="0y6a6s5l98i0vrj66biwr17g6pzpmm5kfz4c57af0yhv7c4s4was"; depends=[Rcpp]; }; clogitLasso = derive2 { name="clogitLasso"; version="1.1"; sha256="1j2kscd6d1jham6yqx5rp78x5vfj2faylkxkbcjaqbynlnqbbxd0"; depends=[foreach lassoshooting]; }; @@ -7349,6 +7443,7 @@ in with self; { cloudml = derive2 { name="cloudml"; version="0.6.1"; sha256="1j15q9yb2rc4fbjxfh21fiq6is8dnb8nfyi7g8iazgfwb3p9ahpx"; depends=[config jsonlite packrat processx rprojroot rstudioapi tfruns withr yaml]; }; cloudos = derive2 { name="cloudos"; version="0.4.0"; sha256="0d6lg7y58w62ikwm83xvc8wky396y4xs5cx3cfn1wxnsnrs462d1"; depends=[dplyr ggplot2 httr jsonlite rappdirs tibble tidyr]; }; cloudstoR = derive2 { name="cloudstoR"; version="0.2.0"; sha256="0x9pl9x5sjs5vwcz5i1r5ymyv3rlv9adjc5y9kvxljdxgvnv6i08"; depends=[cli curl getPass httr keyring rio XML]; }; + clpm = derive2 { name="clpm"; version="1.0"; sha256="1dj9jx7r5d2azxkggkkqyhci7v80gl24qchw0x8xh84krl4cz2pz"; depends=[]; }; clptheory = derive2 { name="clptheory"; version="0.1.0"; sha256="1ix3yh4w97llx8dw2pp1gpwgrfag2zr4wb2hp3z3j3ggs587yic4"; depends=[car dplyr magrittr popdemo]; }; clr = derive2 { name="clr"; version="0.1.2"; sha256="088ks9lrhlyvg3yvlfmb0091yp6qp5bzg9h5r6ryv3bk6y56sajx"; depends=[dplyr lubridate magrittr]; }; clttools = derive2 { name="clttools"; version="1.3"; sha256="0va9k1b4xsb2sgpxzvid6sa8m6b8i3r4kgghclmb78nnrs480cwi"; depends=[]; }; @@ -7372,7 +7467,7 @@ in with self; { clusterPower = derive2 { name="clusterPower"; version="0.7.0"; sha256="1ha7iz1afmgccxhxsl3y1fd9rbf35nrzp6bsz4c4zl0931xbazfb"; depends=[car dplyr foreach lme4 lmerTest mathjaxr nlme progress R_utils shiny tidyr]; }; clusterRepro = derive2 { name="clusterRepro"; version="0.9"; sha256="0s7qqvaf5yxxwhw6qyzfmk65c49yz405gljarwav6aglkx9883cl"; depends=[]; }; clusterSEs = derive2 { name="clusterSEs"; version="2.6.5"; sha256="0d8b79mg0wxfpmx3xq22p9apa2cs2ylbml7lf37w386s6kdgz7ns"; depends=[AER dfidx Formula lmtest mlogit plm sandwich]; }; - clusterSim = derive2 { name="clusterSim"; version="0.51-1"; sha256="1ndch19pgavd51x550kzd4r8c1hnw37942g9mj5ha9wsllnlrgiy"; depends=[ade4 cluster e1071 MASS R2HTML]; }; + clusterSim = derive2 { name="clusterSim"; version="0.51-2"; sha256="0bkgz1sm1767f7pfnlfbxa19rkhzf1l45vsazbzaavxb89i466n3"; depends=[ade4 cluster e1071 MASS R2HTML]; }; clusterability = derive2 { name="clusterability"; version="0.1.1.0"; sha256="15gimcs6wrasafg1ys7id0mkg9fvacxbwpgg9d4b5avk4gff39bs"; depends=[diptest]; }; clusteredinterference = derive2 { name="clusteredinterference"; version="1.0.1"; sha256="01w7i9pmvwmrlf5q6y2d48ib0bm16j16xiw4pqnrvbndx4d6wf6n"; depends=[cubature Formula lme4 numDeriv rootSolve]; }; clusterhap = derive2 { name="clusterhap"; version="0.1"; sha256="1ic6588mqp146jsvrxlxk449zw4n81xixgrny9r29497z7hg5a1m"; depends=[]; }; @@ -7386,7 +7481,7 @@ in with self; { clustree = derive2 { name="clustree"; version="0.5.0"; sha256="1haam13aifak8fladyxwa0gz56anj1zfczfjgs07gbw90kf6azx8"; depends=[checkmate dplyr ggplot2 ggraph ggrepel igraph rlang tidygraph viridis]; }; clustringr = derive2 { name="clustringr"; version="1.0"; sha256="07f0ywpkf8igic7ijvvrjlngq3smjcv9nqnah41fp6wfgvh49ifq"; depends=[assertthat dplyr forcats ggplot2 ggraph igraph magrittr rlang stringdist stringi stringr tidygraph]; }; clustvarsel = derive2 { name="clustvarsel"; version="2.3.4"; sha256="0hzvfcjs1k13j695jx6m0fgmcxy284gp4d59b7zmnvqib153x89x"; depends=[BMA foreach iterators Matrix mclust]; }; - clv = derive2 { name="clv"; version="0.3-2.2"; sha256="072jn3xh6ii7vfp0gx03k1hiafnla1lkyn5hpj17nmqc0jvzp683"; depends=[class cluster]; }; + clv = derive2 { name="clv"; version="0.3-2.3"; sha256="0awjzy3mmd275rxp1h0rvl4l6401kyc90ndys6xnrb7ym46mb9bl"; depends=[class cluster]; }; cmR = derive2 { name="cmR"; version="1.0.3"; sha256="0ml7ip9zxljpgzksbxd15q890q062nf0q81d272dhiizxvr4a0cn"; depends=[fields Matrix]; }; cmaRs = derive2 { name="cmaRs"; version="0.1.2"; sha256="1s92rmb5wxll2bwmmc95z59plpxfz0qn1l5qaf95zgp1ynwzybnm"; depends=[AUC earth Matrix Rmosek ROCR Ryacas0 stringr]; }; cmaes = derive2 { name="cmaes"; version="1.0-12"; sha256="0wk8zkf585ipnxajmibip85cyz7wc5br0cph3cvnacbh7yf2zvay"; depends=[]; }; @@ -7396,9 +7491,9 @@ in with self; { cmce = derive2 { name="cmce"; version="0.1.0"; sha256="0d52ci906zbd4q43qylcyw93acxh7f20jn3r0k74ynyy47131dnd"; depends=[]; }; cmdfun = derive2 { name="cmdfun"; version="1.0.2"; sha256="1pbcq7hi2lcmqnghmy3q2fsk0c9fy5m0637acyzmc096fxbx723j"; depends=[magrittr purrr R_utils rlang testthat usethis]; }; cmenet = derive2 { name="cmenet"; version="0.1.2"; sha256="0v3fassl21wdyx7s4shsib936fr41qr9hxjgcjc2f8az0ljd1p70"; depends=[glmnet hierNet MASS Rcpp RcppArmadillo sparsenet]; }; - cmfrec = derive2 { name="cmfrec"; version="3.5.1"; sha256="1cdsvzvg9dgvn8s6f32rhb3aiqgy1nspz26yp9mnnjlc5swnhrpc"; depends=[]; }; + cmfrec = derive2 { name="cmfrec"; version="3.5.1-1"; sha256="0k3axbc0p5c0rxggp00vv1h5ylnfp57xbb5j3ndgqz0wig2l424z"; depends=[]; }; cmhc = derive2 { name="cmhc"; version="0.2.5"; sha256="0igspwg6lkgqg69mvzwlxbq30gd1h3gkz8bq7awqfn0v735hay7z"; depends=[aws_s3 digest dplyr httr readr rlang stringr tibble]; }; - cml = derive2 { name="cml"; version="0.1.0"; sha256="10qwpgs64zhizid3l7i9ryx214w0kx0121dfkjmvmf00pdb685im"; depends=[vegan]; }; + cml = derive2 { name="cml"; version="0.2.2"; sha256="1k1fj3j6kxpnxzykqbrcv09q8xhp749apfir0hzkp1f2apyjxymi"; depends=[vegan]; }; cmm = derive2 { name="cmm"; version="0.12"; sha256="0q6hs56hhi9vaanx7i7gg7ncv0h29lndla66g9chzmh3lchq3r20"; depends=[]; }; cmmr = derive2 { name="cmmr"; version="0.1.2"; sha256="0nik1pzd1rckalvn7xh6s699kkdjnra3q3bn5x16c1lmpz5bp2s4"; depends=[httr progress RJSONIO]; }; cmna = derive2 { name="cmna"; version="1.0.5"; sha256="161qc7q88ajm3l62bq03lpf35bdii1w1d111085zvs3hrf09iybw"; depends=[]; }; @@ -7419,18 +7514,16 @@ in with self; { cnaOpt = derive2 { name="cnaOpt"; version="0.5.2"; sha256="1ciqh0d88270hizlsks7d05kggaszzl6add2n143z7cswkgfvkyr"; depends=[cna dplyr ggplot2 matrixStats Rcpp]; }; cnbdistr = derive2 { name="cnbdistr"; version="1.0.1"; sha256="05qi41jimslbngjgbwzfda0q25hb28ax79v9yckvrbpgjc8dk990"; depends=[hypergeo]; }; cncaGUI = derive2 { name="cncaGUI"; version="1.1"; sha256="0wmapwfag2grshmdrpmlinzikrsprcc8a1afq4dfkwr54rb3m6ky"; depends=[MASS plotrix rgl shapes tcltk2 tkrplot]; }; - cns = derive2 { name="cns"; version="0.1.0"; sha256="1kn1cq32pp05ag22n7iwjxn6lxpqn443npzk6vdskjm5pbnsc33k"; depends=[]; }; cnum = derive2 { name="cnum"; version="0.1.3"; sha256="0iphbx5ii4ij0bi9nqdz793i4gk2164jlgz5xn8yzsayjmizhdk2"; depends=[BH Rcpp stringr]; }; coRanking = derive2 { name="coRanking"; version="0.2.4"; sha256="1c1b005q7dr4868wm6vcs3x0849vf8xj7aacxnyc9wzb4lgkd2lb"; depends=[]; }; coala = derive2 { name="coala"; version="0.7.1"; sha256="0bzncb7v7vhy7ir2fa8kx2pa1jsd48bwm5ylw7alw5a9bdmp0swi"; depends=[assertthat digest R6 Rcpp RcppArmadillo rehh scrm]; }; coalescentMCMC = derive2 { name="coalescentMCMC"; version="0.4-4"; sha256="09abhcp6y98378kf018inhxpkkirch5636nskywn0p6shp2q278x"; depends=[ape coda lattice Matrix phangorn]; }; coalitions = derive2 { name="coalitions"; version="0.6.24"; sha256="1ya9g2i1ds2w4hxbacmql67a3hh1grycj74g6b7xb05h478ym87n"; depends=[checkmate dplyr ggplot2 gtools jsonlite lubridate magrittr purrr RCurl rlang rvest stringr tibble tidyr xml2]; }; coarseDataTools = derive2 { name="coarseDataTools"; version="0.6-6"; sha256="1g9hxyp2vdhq1zr18qlf2aqwp9d9hr07k6grmvblj2xrwlzfvc1p"; depends=[MCMCpack]; }; - cobalt = derive2 { name="cobalt"; version="4.5.0"; sha256="04z0w5wia9xrq766qwqwsphhn2mz0hzfg060ddfx2ikv9qdcp690"; depends=[backports chk crayon ggplot2 gridExtra gtable rlang]; }; + cobalt = derive2 { name="cobalt"; version="4.5.1"; sha256="1h175i01xii07hzqrz6qkqvv0w2n64m8d158ql02ka9ka206i6vr"; depends=[backports chk crayon ggplot2 gridExtra gtable rlang]; }; cobiclust = derive2 { name="cobiclust"; version="0.1.0"; sha256="068cqrhx7lxsvcjb62rgrca7y20cybz4445bl1qc6k16ca4bh0m9"; depends=[cluster]; }; cobs = derive2 { name="cobs"; version="1.3-5"; sha256="04f6a6gp11p93j2k35mbrfqgjx5qsgi3dj1085a5v5s0z6l7vbkz"; depends=[quantreg SparseM]; }; coca = derive2 { name="coca"; version="1.1.0"; sha256="1lh7q3ip1jaz5zj5zcnd5whwpjw6zcrxs6j0j8mnmjsnw2kr4m5n"; depends=[caret cluster fpc glmnet Matrix nnet pheatmap RColorBrewer sparcl]; }; - cocktailApp = derive2 { name="cocktailApp"; version="0.2.2"; sha256="1dfalz1psmy1h8hb8hksgr7iq05ckf22yick7syhjapprb556mik"; depends=[dplyr DT forcats ggplot2 ggtern magrittr shiny shinythemes tibble tidyr]; }; coconots = derive2 { name="coconots"; version="1.1.1"; sha256="0qwhkbw442qk3vxpvjssp15qkwlarfvajppwyaj2ckngja3yaaqh"; depends=[forecast ggplot2 HMMpa JuliaConnectoR matrixStats numDeriv Rcpp RcppParallel StanHeaders]; }; cocor = derive2 { name="cocor"; version="1.1-4"; sha256="05hl8nlxzimas36cm5b0k7fbjz69ijif7li8kgnpaxk4zmgvzy18"; depends=[]; }; cocorresp = derive2 { name="cocorresp"; version="0.4-3"; sha256="0lqab8f0l24hdvgnfrvvzpi969f35g5i95mq3vj7kxx0xhhz1z08"; depends=[vegan]; }; @@ -7478,7 +7571,7 @@ in with self; { cold = derive2 { name="cold"; version="2.0-3"; sha256="1y2l1v7s1v3m4nhlnl72n075h53vm93vxmfn4b6269n690wl9s6d"; depends=[cubature MASS]; }; colf = derive2 { name="colf"; version="0.1.3"; sha256="1av82yrp6csw7700ymipd02j73cmzn0apv7ykachjw09nzk86kvj"; depends=[nlsr]; }; collUtils = derive2 { name="collUtils"; version="1.0.5"; sha256="0gbk3lrb2lwq2ixrpcngng6qz6axjb4iyqy5606x1zmjm71c060p"; depends=[Rcpp rJava]; }; - collapse = derive2 { name="collapse"; version="1.9.4"; sha256="0ms22fa45hpfb4034ybyj795ny3zzh9x0vi2012sbrl3l0wld9xk"; depends=[Rcpp]; }; + collapse = derive2 { name="collapse"; version="1.9.6"; sha256="07mmmynkx0pz476vf16if5nwwjp1zp3nhzjlw0hmvkiiwdr590rg"; depends=[Rcpp]; }; collapsibleTree = derive2 { name="collapsibleTree"; version="0.1.7"; sha256="0b65pbp1wnpsrayqi630ds4r98jvcvynnlp6wxdqrnnr9nzw5343"; depends=[data_tree htmlwidgets]; }; collateral = derive2 { name="collateral"; version="0.5.2"; sha256="1wnzgpayjsqnqry0cdmkijyjkkjhbc8hxwlkx7aj9qwaiz7wiibr"; depends=[crayon pillar purrr]; }; collatz = derive2 { name="collatz"; version="1.0.0"; sha256="02dvivahpq3zyiyhx7w36bs3dw1p2r3g167sjf3k173q7rr77p0m"; depends=[gmp]; }; @@ -7487,7 +7580,7 @@ in with self; { collin = derive2 { name="collin"; version="0.0.2"; sha256="12gxndq5xqfvc9m10y6pjf99npr65dp1fhpy5lg9wnq7r4zv2610"; depends=[dlnm MASS mgcv nlme VGAM]; }; collpcm = derive2 { name="collpcm"; version="1.2"; sha256="0v7a6mjchkahmxyf68ii051s1hvarb6knkmnhq5lfw8n4bdxh39x"; depends=[gtools latentnet network]; }; colmozzie = derive2 { name="colmozzie"; version="1.1.1"; sha256="0sn7dqg7rnddnmdb10c6scws6kgi1lz4lw8nc698x63z431ah1p8"; depends=[]; }; - coloc = derive2 { name="coloc"; version="5.1.0.1"; sha256="0iva1gin37yw4azwqllpmm5dhg7zi10j3j81jiqyzrkad9bglys2"; depends=[data_table ggplot2 susieR viridis]; }; + coloc = derive2 { name="coloc"; version="5.2.2"; sha256="0358y5ifpyldylqcqkipmdsysg98l9f12ss5pklz3zia3ja4wc2a"; depends=[data_table ggplot2 susieR viridis]; }; colocalization = derive2 { name="colocalization"; version="1.0.2"; sha256="0jrrh9nxjl3261rp1fnjfnydpxwpi7v0d20kzd0xc6awf52gydbb"; depends=[ggplot2]; }; colocalized = derive2 { name="colocalized"; version="0.2.0"; sha256="1q98wfqk0p9p92jgjf8liamz6grzwy6h57k7681fm07wfnyr268g"; depends=[doParallel foreach purrr]; }; colocr = derive2 { name="colocr"; version="0.1.1"; sha256="0ijykza6fdmwbr5zbyfjf382anrxh0lb9hlallyawfi6z076fv7j"; depends=[imager magick magrittr scales shiny]; }; @@ -7496,7 +7589,7 @@ in with self; { colorRamp2 = derive2 { name="colorRamp2"; version="0.1.0"; sha256="0b4m30s9rkhb37lf2zr6zgnfvxdj3nhm0jp5b42fxgy2y5qd5q02"; depends=[colorspace]; }; colorRamps = derive2 { name="colorRamps"; version="2.3.1"; sha256="12jnkj50yh2hc5l7j56lrrrmn58akrj9dwj98vzf42iq4h42kwb1"; depends=[]; }; colorSpec = derive2 { name="colorSpec"; version="1.4-0"; sha256="02k2264kc9104jayjf4j7kniwxialw7f1f3l3fvzz3nmwv71bhw3"; depends=[]; }; - colorblindcheck = derive2 { name="colorblindcheck"; version="1.0.0"; sha256="17bcnjzpnb0a0fw27y5slrakdg0p4mzhcj8684622ljinszvdz58"; depends=[colorspace spacesXYZ]; }; + colorblindcheck = derive2 { name="colorblindcheck"; version="1.0.2"; sha256="1vy4ls5fmzy1bx2garhkvy2f4wqwjy2ph9b3jlzdl5f2lpx2mwq2"; depends=[colorspace spacesXYZ]; }; colordistance = derive2 { name="colordistance"; version="1.1.2"; sha256="14j63anmf4j1lmcd7nyr9k7alhycdkrr5yiar262j8wha68f245n"; depends=[abind ape clue emdist gplots jpeg magrittr mgcv plotly png qpdf scales scatterplot3d spatstat_geom]; }; colorednoise = derive2 { name="colorednoise"; version="1.1.0"; sha256="0x6l9civgqr6lbvdxnhzm30ykx9i6k1q3n6skhnq9b6b52zwrcx4"; depends=[data_table purrr Rcpp RcppArmadillo]; }; colorfindr = derive2 { name="colorfindr"; version="0.1.4"; sha256="175h476dzq1f2x25vdd268xj4ja4lv8fhfj9vld85waqi0sq515g"; depends=[bmp dplyr jpeg magrittr pixmap plotly plotwidgets png purrr rsvg stringr tibble tiff treemap]; }; @@ -7512,7 +7605,7 @@ in with self; { colorspace = derive2 { name="colorspace"; version="2.1-0"; sha256="0k31hazd2rq5lyg3y89y2v5jqadz2qlxd1bhvj89q4aldfxql1q4"; depends=[]; }; colourlovers = derive2 { name="colourlovers"; version="0.3.6"; sha256="13fqn6hbqjk3d8krpqb3hmsq06qrbks8a9ia5441hd6m7m8wjjkc"; depends=[httr jsonlite png XML]; }; colourpicker = derive2 { name="colourpicker"; version="1.2.0"; sha256="12k3m2s49pc1p2hzd4zqqzzdf94q7hhqz7zgp8w908a6w3p80b5w"; depends=[ggplot2 htmltools htmlwidgets jsonlite miniUI shiny shinyjs]; }; - colourvalues = derive2 { name="colourvalues"; version="0.3.8"; sha256="053aspg4bpir0yc22r84am2nwa4qdg4rsi9fz3gfcxvsvn9b1wfl"; depends=[BH Rcpp]; }; + colourvalues = derive2 { name="colourvalues"; version="0.3.9"; sha256="0prrvkj3xi09fbjz9sd12nvqmsm47fkpw9v9kxsrx3wgm1vi49in"; depends=[BH Rcpp]; }; colourvision = derive2 { name="colourvision"; version="2.0.4"; sha256="1abrp6x9wdl5bdbysgziznzmiaik8v4n76b4bgnlk13mwbhfn47h"; depends=[Matrix]; }; cols4all = derive2 { name="cols4all"; version="0.6"; sha256="1vgwb9rpnbwadpbjw9cyvf34w69wp8ml55skdnj59bqmn94a6fq4"; depends=[abind colorspace png stringdist]; }; colt = derive2 { name="colt"; version="0.1.1"; sha256="028jqvgr14ig8jxp8h2lrf7mainzppgqh6v1479qfv4l9is3bnwy"; depends=[crayon]; }; @@ -7536,14 +7629,14 @@ in with self; { commonmark = derive2 { name="commonmark"; version="1.9.0"; sha256="13slfv9xpd5fhccw6xgm274d338gmpvc4sdzd943dm684rd1ml3d"; depends=[]; }; commonsMath = derive2 { name="commonsMath"; version="1.2.7"; sha256="02i6pn568z6h2lnnalv7z3dd6xvh79ki8wy4h42qq05766x3xq2r"; depends=[]; }; communication = derive2 { name="communication"; version="0.1"; sha256="08fkllwwcw2llpg5ivxhqghc88qfg1vdy0ciif3xazhhymb8wavb"; depends=[abind diagram GGally ggplot2 gtable gtools igraph magrittr plyr purrr RColorBrewer Rcpp RcppArmadillo reshape2 scales signal tuneR useful wrassp]; }; - comorbidity = derive2 { name="comorbidity"; version="1.0.5"; sha256="1mhxnh39zzxmvbw5w8k4a7923zvs8qrwczjzrmffsq0qj098qg94"; depends=[checkmate data_table stringi]; }; + comorbidity = derive2 { name="comorbidity"; version="1.0.7"; sha256="189z23a66mz10rzqzgljkygyrgishm4mzzrqhqs1ba335dzvzm3d"; depends=[checkmate data_table stringi]; }; comorosmaps = derive2 { name="comorosmaps"; version="1.0.0"; sha256="1rjsgvln5wa7bbh4iqpfvmdqvmx4cgl8mxxkar76rkam9r54hwhv"; depends=[dplyr magrittr sf]; }; compHclust = derive2 { name="compHclust"; version="1.0-3"; sha256="0agay7rn5mrw07imz4l547b7m9pfcg3rhz4krfxrvg1q2z2kryvj"; depends=[]; }; comparator = derive2 { name="comparator"; version="0.1.2"; sha256="1mygip50mc3jni1zc6jhjg2mx61sjgdq5w7snqdvv1rycp3fdpb1"; depends=[clue proxy Rcpp]; }; compare = derive2 { name="compare"; version="0.2-6"; sha256="0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"; depends=[]; }; compareC = derive2 { name="compareC"; version="1.3.2"; sha256="0r3d03yj5fjzfc6awc16x9420366dcy3nhvibjlrn0m10il714pc"; depends=[]; }; compareDF = derive2 { name="compareDF"; version="2.3.5"; sha256="1sq30ndlidpmyvpqkzhq5shy52i22p80lcfar3p8dqymndg1bgyl"; depends=[data_table dplyr htmlTable openxlsx rlang stringr tibble tidyr]; }; - compareGroups = derive2 { name="compareGroups"; version="4.6.0"; sha256="0w44dk3ba9dq68kl2y5665h6l8j0w59mx70rwi58c77w3bqz0jry"; depends=[chron flextable HardyWeinberg kableExtra knitr officer rmarkdown survival writexl]; }; + compareGroups = derive2 { name="compareGroups"; version="4.7.0"; sha256="02g68vyx8z79jqmg3bvkqf0bsr2000ard26c4xp1g03ybn8xws06"; depends=[chron flextable HardyWeinberg kableExtra knitr officer rmarkdown survival writexl]; }; compareMCMCs = derive2 { name="compareMCMCs"; version="0.5.0"; sha256="0g3fzazfs6f8ni251ilzk0q65hvgfhglly7v4rmkl4jwhzvsz1yr"; depends=[coda ggplot2 nimble R6 reshape2 xtable]; }; comparer = derive2 { name="comparer"; version="0.2.3"; sha256="1025r91cag4d1bpnpx5h7ja0a57k4rs9z1s3a90pq3h91rdcsr1c"; depends=[R6]; }; comparison = derive2 { name="comparison"; version="1.0-5"; sha256="0vg8s9j2xjzv7bidd59givxgcqzhdd29q84dj4ww2a6vkmq269r7"; depends=[isotone]; }; @@ -7552,18 +7645,18 @@ in with self; { comperes = derive2 { name="comperes"; version="0.2.7"; sha256="1qcrm0mw90gkx0dcka2bsszrmcbl46lrbgp5i58xbws9s5i54lff"; depends=[dplyr magrittr rlang tibble tidyr]; }; competitiontoolbox = derive2 { name="competitiontoolbox"; version="0.7.1"; sha256="0s8n62hssx0qkznf0x6gw9yzlngiqgjw34k9wyhlh5iiwq4fyc3x"; depends=[antitrust ggplot2 rhandsontable shiny trade]; }; compicc = derive2 { name="compicc"; version="0.1.0"; sha256="1j2yy4dw3g96vpm3dq81dixhfzm3nqqawphmmg9hcsqir5f6xg9a"; depends=[irr]; }; + compindPCA = derive2 { name="compindPCA"; version="0.1.0"; sha256="1v7fppbb1pswd1d1bw0szmmjc51smnmal5psd98ms5cfm7yv597g"; depends=[factoextra]; }; compindexR = derive2 { name="compindexR"; version="0.1.1"; sha256="065a5f406zbxqjy7v6r3bqnybxsnvdlds8rdm3kq62smkch7cf4x"; depends=[car dplyr NlcOptim pracma]; }; completejourney = derive2 { name="completejourney"; version="1.1.0"; sha256="0ysbpmd7rglz3diy2cpcgvmmcnysradb4ddiwix7kbhzrhvhrdrs"; depends=[curl dplyr progress stringr tibble zeallot]; }; complexNet = derive2 { name="complexNet"; version="0.2.0"; sha256="199zxqsbasd1j598srpb10y8mjw2l4plra1121i9sdsf40bvd7aw"; depends=[]; }; complexity = derive2 { name="complexity"; version="1.1.2"; sha256="0y1rlz456mny4d0kr8rx26qg5frr3zxsbzm1cc76h475vad4ns28"; depends=[combinat shiny]; }; complexplus = derive2 { name="complexplus"; version="2.1"; sha256="16w9v7d1ckavqmr86l34frr37pkvdn0iqnb17ssb8xaggns5lgqx"; depends=[expm Matrix]; }; complmrob = derive2 { name="complmrob"; version="0.7.0"; sha256="0dvkc5y53041agkjz3rl898hkq686pxzr6flf2qx1g3jbza3pk1y"; depends=[boot ggplot2 robustbase scales]; }; - compositions = derive2 { name="compositions"; version="2.0-5"; sha256="0niccv8i3jrcjnjm7dygzhz6bfah9za6lswa669pfpgsycilpf51"; depends=[bayesm MASS robustbase tensorA]; }; + compositions = derive2 { name="compositions"; version="2.0-6"; sha256="0d0wlrwfpjvz02cwrqpg5bnrf8isz359dl9qqxn9yb6czpmp9ls5"; depends=[bayesm MASS robustbase tensorA]; }; compound_Cox = derive2 { name="compound.Cox"; version="3.28"; sha256="1a9rngw2y7c7byirv2xd65bhryfn4f3xdfw992aa4n9bj1w3q2fq"; depends=[MASS numDeriv survival]; }; comprehenr = derive2 { name="comprehenr"; version="0.6.10"; sha256="1wlc06swm45nxg9hgik3wj832sr074i3p0j5kxm0i2r74klfy22w"; depends=[]; }; compute_es = derive2 { name="compute.es"; version="0.2-5"; sha256="00133s3l3g70xrfnxgxhvbjr8izvaj9h0c73iaiyjmlgj84x69m8"; depends=[]; }; comsimitv = derive2 { name="comsimitv"; version="0.1.5"; sha256="0g1b14bx0dgy7y24gxlj0r2sgiild14cvr1zmf37df7g3bswn112"; depends=[MASS vegan]; }; - comtradr = derive2 { name="comtradr"; version="0.3.0"; sha256="17fdcgx27352jqdvz05q3crg29h78d0alp0abxmkzymwk3yq842j"; depends=[httr jsonlite magrittr purrr]; }; con2aqi = derive2 { name="con2aqi"; version="0.1.0"; sha256="1gdd1y6xg26fz199hvryzsnp16qbsz13chqqxyxnkgrai1l72mhf"; depends=[]; }; con2lki = derive2 { name="con2lki"; version="0.1.0"; sha256="005bk3y7il94h7zlkdjlibm1zm9yplbbzlybdjxmckh67sr6d03x"; depends=[]; }; conStruct = derive2 { name="conStruct"; version="1.0.5"; sha256="0z4a5fj55n2wmhyynfgai4f2mnb53fmqjj2vcn8lldqzpmrk15ad"; depends=[BH caroline doParallel foreach gtools Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; @@ -7593,7 +7686,7 @@ in with self; { condvis = derive2 { name="condvis"; version="0.5-1"; sha256="1ngxqfa0mr86cv610da4ljypxpdvx0n5pfgj3zfksnwxlwc0dvbj"; depends=[MASS]; }; condvis2 = derive2 { name="condvis2"; version="0.1.2"; sha256="0zxr0m50gyg5b1ghdx5ysq8f389gg00zx719zqb47ign83xlbn63"; depends=[cluster colorspace DendSer ggplot2 gower plyr RColorBrewer scales shiny]; }; coneproj = derive2 { name="coneproj"; version="1.16"; sha256="06injsc860hcgn5wh81i9lw4nmrc1bmv3dksk5pnp62x1yykhnnh"; depends=[Rcpp RcppArmadillo]; }; - conf = derive2 { name="conf"; version="1.7.1"; sha256="1nc59i5m7g5lz6hnlp8qgbszjzk63j63f2kpzlgm8w9pgi7wfvrz"; depends=[fitdistrplus pracma rootSolve statmod]; }; + conf = derive2 { name="conf"; version="1.8.1"; sha256="1g5lxw86nicariy7sxfpkwsfch44pf6cn23yk0a4rcvbhgyxaj58"; depends=[fitdistrplus pracma rootSolve statmod]; }; conf_design = derive2 { name="conf.design"; version="2.0.0"; sha256="06vdxljkjq1x56xkg041l271an1xv9wq79swxvzzk64dqqnmay51"; depends=[]; }; confSAM = derive2 { name="confSAM"; version="0.2"; sha256="1l67ndya07hh0yqfbabfhsvp3hryklx0022grpr0cb7ff88d1zam"; depends=[]; }; confidence = derive2 { name="confidence"; version="1.1-2"; sha256="0m6iz59n5jpi0ig3za3nir4d4bdsysf5g47d2nakfmaz03wk520z"; depends=[ggplot2 knitr markdown plyr xtable]; }; @@ -7601,7 +7694,7 @@ in with self; { configr = derive2 { name="configr"; version="0.3.5"; sha256="1qlfza9fwqdhw37gxhgxgp4x2dg1qlvdw0rf9fn6a8hgjaj9z8a3"; depends=[glue ini jsonlite RcppTOML stringr yaml]; }; configural = derive2 { name="configural"; version="0.1.4"; sha256="1vi6xczqlrzhrfv418wlvqiv69kap4awlxkjpgi7b1ix5ayc8mq8"; depends=[]; }; confinterpret = derive2 { name="confinterpret"; version="1.0.0"; sha256="0qldaqpx7kpk71zfwv465jrscwzc9w3xfv52i4h01k9aw3q6m8ja"; depends=[]; }; - confintr = derive2 { name="confintr"; version="0.2.0"; sha256="1zpprv5ysmnqn83xdsixsm6jhsi1gck32z6x60gp0y8xs25mwcbg"; depends=[boot]; }; + confintr = derive2 { name="confintr"; version="1.0.1"; sha256="0p2k1bflyb82grp6ikh7dw3dacvsch8zfwxwwr4v325q0yk98iiz"; depends=[boot]; }; conflicted = derive2 { name="conflicted"; version="1.2.0"; sha256="121h4b4rms23szcfs1nrbgdk812d61vhrmwn9lgpsgnsaaxqd6y9"; depends=[cli memoise rlang]; }; conflr = derive2 { name="conflr"; version="0.1.1"; sha256="1bjdmvi0n8746g7dxwgzh3fi33sq4bgfr0nd3nqd2caj8ryi2gv9"; depends=[askpass commonmark curl glue httr knitr miniUI purrr R6 rlang rmarkdown rstudioapi shiny stringi xml2]; }; conformalClassification = derive2 { name="conformalClassification"; version="1.0.0"; sha256="03v6xbgipb97byarqj0d38z9yb2g54mkkw343jxmi2j058z26yw7"; depends=[doParallel foreach mlbench randomForest]; }; @@ -7624,7 +7717,7 @@ in with self; { conquestr = derive2 { name="conquestr"; version="1.0.7"; sha256="152qnfc9vp1iq06rkb0lyns2h86bsd9pjbq0hq51pp45wmki7yxw"; depends=[dplyr ggplot2 ggrepel kableExtra magrittr Rcpp rlang stringr tidyr tidyselect]; }; conserveR = derive2 { name="conserveR"; version="1.0.4"; sha256="05b1pqgbd9sh4lyg9zqjfg4019dqp8xj3k1w31qqdld8m3g5lrd6"; depends=[cowplot GGally ggplot2 ggrepel magrittr network rlang scales sna]; }; consolechoice = derive2 { name="consolechoice"; version="1.1.1"; sha256="06xlwrjc9bj8r2ii160mclg56mw9fw2wzms3q68rcb8ril0hqvd3"; depends=[]; }; - consort = derive2 { name="consort"; version="1.1.0"; sha256="0m3y53134w0j0n6vr8mw0pjpvlfjdk0sq10lpacifp7kfsi0d3xh"; depends=[]; }; + consort = derive2 { name="consort"; version="1.2.0"; sha256="1jshk53121w58i4if593qzxm6lcrrggz8parwhqvv6hnbx51rhck"; depends=[]; }; consortr = derive2 { name="consortr"; version="0.9.1"; sha256="1c71wvr7sckrv4k65l71l160z6d9amzyydbi6mf2b79zh9zv8g1g"; depends=[data_table DiagrammeR dplyr magrittr purrr rlang shiny shinydashboard tibble]; }; constants = derive2 { name="constants"; version="1.0.1"; sha256="11nliijwphqphik95b3xpawpjg7w4s089wdhjci5bw4va4bgd1xm"; depends=[]; }; constellation = derive2 { name="constellation"; version="0.2.0"; sha256="1d49rnyf2z3bvx158nsmgmb0x7xcgxl9f8y98pwg5wlqck7af99q"; depends=[data_table]; }; @@ -7632,10 +7725,10 @@ in with self; { contTimeCausal = derive2 { name="contTimeCausal"; version="1.1"; sha256="0r2mg0b65xk020v0im2nzfq9644nx0ns2vddiybwz3x5c7z1bpvg"; depends=[dplyr survival zoo]; }; contactdata = derive2 { name="contactdata"; version="1.0.0"; sha256="0lh3m5aln47clyc5pmz75sggqnzgkg68wyrla11zbg9isyh581nw"; depends=[]; }; container = derive2 { name="container"; version="1.0.4"; sha256="0vpha9s5d8mxqdzmbfy92qz78b6gfibwgp1ijq70c5vqs2clkzb1"; depends=[data_table R6]; }; - contentid = derive2 { name="contentid"; version="0.0.16"; sha256="17zb7fpnr1a2ixanxmgk9awwmb3njw1lk97s3a0w6cvd7dwz8iz2"; depends=[curl fs httr openssl]; }; + contentid = derive2 { name="contentid"; version="0.0.17"; sha256="1vnw5hw9vkdqfps8qmj5v523jkil9r9530ap6j4dwx40c6d7nyhb"; depends=[curl fs httr openssl]; }; contfrac = derive2 { name="contfrac"; version="1.1-12"; sha256="0sq5c7ny235yrkv2xc4insgxby6rvzc1qsj8h301cd2if3lwbgwm"; depends=[]; }; contingency = derive2 { name="contingency"; version="0.0.10"; sha256="155pzw1ifm1c4pjd5wxj9lb89a6wc9l5g1v2rhq8rfswzds89gjv"; depends=[rje]; }; - contingencytables = derive2 { name="contingencytables"; version="1.0.4"; sha256="18j7iaficb0lhl6g83cgr346a1wq19s20nmiclrxryyk88pswzak"; depends=[boot MASS]; }; + contingencytables = derive2 { name="contingencytables"; version="2.0.0"; sha256="0dswmxdw4dg0915f2bjm80awhn1pphkz8b62kvr71rpvwlvnf99y"; depends=[boot MASS]; }; contourPlot = derive2 { name="contourPlot"; version="0.2.0"; sha256="0bjwq3p57d6hadln8vwjkh7c9sbb466h3zcq9kpx7kd31z6x8gnz"; depends=[interp RColorBrewer]; }; contoureR = derive2 { name="contoureR"; version="1.0.5"; sha256="1izq1alkf24zd2sf2ir2adyrkwhdj7n89cv6z0dfh5mfqld5bkdn"; depends=[geometry plyr Rcpp reshape]; }; contrast = derive2 { name="contrast"; version="0.24.2"; sha256="1k7gdjmzgsw3rm90k9gpzlg4b8ma7vxamdj106b6r40q1ypaqha5"; depends=[nlme rms sandwich]; }; @@ -7647,6 +7740,7 @@ in with self; { convdistr = derive2 { name="convdistr"; version="1.5.3"; sha256="1cp2qpyl0jxp0lwznlc94mcigfgysyq9xmi1z7ihd7jxd9mk8aw9"; depends=[dplyr extraDistr ggplot2 MASS pryr RColorBrewer SHELF shiny tidyr]; }; convergEU = derive2 { name="convergEU"; version="0.5.4"; sha256="0sml8ill3jbf5rf8vi8m74w8q67wsdj1askfn0vmfwr4mvadxsim"; depends=[broom caTools dplyr eurostat ggplot2 ggpubr purrr rlang rmarkdown stringr tibble tidyr tidyselect]; }; convertGraph = derive2 { name="convertGraph"; version="0.1"; sha256="1jsrygj6ydzc0nzyzaq95j4blqavj7dqz182vgm1ckv8an3if0jx"; depends=[]; }; + convertbonds = derive2 { name="convertbonds"; version="0.1.0"; sha256="0xb6b5xqcgapmvrq3ivcknsbg9m4zkwff7i7l7j78nqafdm45jni"; depends=[]; }; convertid = derive2 { name="convertid"; version="0.1.3"; sha256="00mi1jwb5b07j182zf68fqasb9ggkbk4c8dd1i0wlad7az2rz494"; depends=[AnnotationDbi biomaRt org_Hs_eg_db org_Mm_eg_db plyr stringr xml2]; }; convertr = derive2 { name="convertr"; version="0.1"; sha256="1y9aq5in2qv1323amblmq3g22flpqvpkgkrw12kahg56mqf2b3iq"; depends=[DT miniUI rstudioapi shiny]; }; convevol = derive2 { name="convevol"; version="2.0.0"; sha256="1pl47rbxps36w0apsq05jkmz0d6w43yfpcl0kr04l50z7jwn81k9"; depends=[ape cluster geiger MASS phytools]; }; @@ -7684,7 +7778,7 @@ in with self; { coreCollection = derive2 { name="coreCollection"; version="0.9.5"; sha256="1r5x5j91k0zfa2krcd0v2hsifv8a3f7czv6yb7zi7qx5wqak5kk9"; depends=[R6 Rcpp]; }; coreNLP = derive2 { name="coreNLP"; version="0.4-3"; sha256="0i08hrkp5slwhwnz34ndl9y37km2zmmysmm9swvvzmisihjrmb2d"; depends=[rJava XML]; }; coreSim = derive2 { name="coreSim"; version="0.2.4"; sha256="1fhlss420rhs21l9i2ag5g3j0vnrkpqdh13ca4rwfan6h35qr3sm"; depends=[dplyr MASS]; }; - corehunter = derive2 { name="corehunter"; version="3.2.1"; sha256="0cxvhmi768kz3q8hydb6y9nqvc8hvkmq8nc5yfry4k94whk12wax"; depends=[naturalsort rJava]; }; + corehunter = derive2 { name="corehunter"; version="3.2.2"; sha256="04rqmhs7h0kk42la4r42pihz12z2rs36avb2wbpdnmdjiyz5xs6p"; depends=[naturalsort rJava]; }; corels = derive2 { name="corels"; version="0.0.4"; sha256="1ygbvhnz304y4y708ygr4x6kbwv7bfpjd5hhcrcc6lma59h7arfn"; depends=[Rcpp]; }; corkscrew = derive2 { name="corkscrew"; version="1.1"; sha256="1nb81r4lsrajcj3xz3f7p6xznnb38yg3rnnh44rd3kabca4d8r1s"; depends=[ggplot2 gplots igraph RColorBrewer]; }; corlink = derive2 { name="corlink"; version="1.0.0"; sha256="06n9pcvbn8y9gy0mn9c0sw05424ss8smpaw3ly6a785cmj3d9b6m"; depends=[]; }; @@ -7697,8 +7791,7 @@ in with self; { corpcor = derive2 { name="corpcor"; version="1.6.10"; sha256="028fw61n61i79fhnaqx7gmdifdpbvp3yiaq9vvfrbv4k7i84r83i"; depends=[]; }; corpora = derive2 { name="corpora"; version="0.5-1"; sha256="1bkmarwxqfb4jf7aa1x82lhykmy25z1pknfmq1g1g789g074090k"; depends=[]; }; corporaexplorer = derive2 { name="corporaexplorer"; version="0.8.6"; sha256="1d3a1dfch9fsgq0d3am3j4ygab9k1n7px3crwwr33f8n9r3vdwmp"; depends=[data_table dplyr ggplot2 lubridate magrittr padr plyr RColorBrewer re2 rlang rmarkdown scales shiny shinydashboard shinyjs shinyWidgets stringi stringr tibble tidyr]; }; - corpus = derive2 { name="corpus"; version="0.10.2"; sha256="0fxa38xbd5fyhh0q1ycx8snj7ly8hv9jclbs77agkb6pb6p7yr64"; depends=[utf8]; }; - corpustools = derive2 { name="corpustools"; version="0.4.10"; sha256="1c3kr5vfa9n02741s63wmr6vmz37sn5qqcniy8gywfrmhwzlgk8a"; depends=[data_table digest igraph Matrix pbapply quanteda R6 Rcpp RcppProgress RNewsflow rsyntax stringi tokenbrowser udpipe wordcloud]; }; + corpustools = derive2 { name="corpustools"; version="0.5.1"; sha256="154n9gxzg9cx10sxbb05df9wsr378k2qhkprqr9cyh1q5ll1pki7"; depends=[data_table digest igraph Matrix pbapply quanteda R6 Rcpp RcppProgress RNewsflow rsyntax stringi tokenbrowser udpipe wordcloud]; }; corr2D = derive2 { name="corr2D"; version="1.0.3"; sha256="11a05rg08fb64zk3wjlid9fl32r14x0n8p030w05q82bxnynprvg"; depends=[colorspace doParallel fields foreach mmand]; }; corrDNA = derive2 { name="corrDNA"; version="1.0.1"; sha256="1mfjrzpcb63ydyj1yxa0wd3vh4z0rdwsqv09w0a0l4l7mhb5jz2k"; depends=[mvtnorm]; }; corrarray = derive2 { name="corrarray"; version="1.2.0"; sha256="1hsk425xjz9p3wwvia7h78dg24qsr5r977xm2ap5z40ah1bw7bzi"; depends=[Hmisc]; }; @@ -7706,7 +7799,7 @@ in with self; { correctR = derive2 { name="correctR"; version="0.1.2"; sha256="0mjknma3ffhkmqxfq6lslc6ywc4pmm973s6nn4xsjwai9n4nc1qi"; depends=[]; }; correctedAUC = derive2 { name="correctedAUC"; version="0.0.3"; sha256="0c2kq7asq5mp48p8niqb84wnw4q2q2985wxbrywrhsszm9p3xspb"; depends=[ICC mnormt]; }; corregp = derive2 { name="corregp"; version="2.0.2"; sha256="1v048dibn2x3y5mi2damcsr9i5kdig5n53g5j9gf31lqkzzjmnh3"; depends=[data_table diagram ellipse gplots rgl]; }; - correlation = derive2 { name="correlation"; version="0.8.3"; sha256="09hk9152q7j8rlr8mj8m712vvvb0p46m13vmd848wr6g5pg3rc9z"; depends=[bayestestR datawizard insight parameters]; }; + correlation = derive2 { name="correlation"; version="0.8.4"; sha256="07fz7wmvrcd6b023jhj3bsrvg4w6i7f1v99jslm0gj84vzmnqzbs"; depends=[bayestestR datawizard insight parameters]; }; correlationfunnel = derive2 { name="correlationfunnel"; version="0.2.0"; sha256="0xil7cihqk7gzpy0q97sg5sw5z0gy7zqvx0f0bizcfks9gwp43cv"; depends=[cli crayon dplyr forcats ggplot2 ggrepel magrittr plotly purrr recipes rlang rstudioapi stringr tibble tidyr]; }; correlbinom = derive2 { name="correlbinom"; version="0.0.1"; sha256="1ix3ccxzr7vqblbda5awsva3h95b69v7kc6adz622bbi8r36xxcq"; depends=[Rmpfr]; }; correspondenceTables = derive2 { name="correspondenceTables"; version="0.7.4"; sha256="1078da9m8j8ph314f6bdvdcd70rfmjdk7cscchfpq5ggyr2hkrpk"; depends=[data_table]; }; @@ -7727,10 +7820,12 @@ in with self; { cosso = derive2 { name="cosso"; version="2.1-2"; sha256="0r0gil5fk4zp33syww40va8h964zn38v0ismw0k4xsh7c8nrr8lm"; depends=[glmnet quadprog Rglpk]; }; costat = derive2 { name="costat"; version="2.4"; sha256="0c47bklqjgjmdglw3mi9lvygwjr5w6i1zv91ll3vpnl5dnay0692"; depends=[wavethresh]; }; costsensitive = derive2 { name="costsensitive"; version="0.1.2.10"; sha256="192q55123yzcjjh4047ppxa3h7gk9afqnvm1nlhzs4ccqz71g411"; depends=[]; }; - cotram = derive2 { name="cotram"; version="0.4-2"; sha256="0qgbckdjp53xd40b83xbnadgn375lmm69hvilmc4ka9h5drj2igb"; depends=[alabama basefun Matrix mlt survival tram variables]; }; + cotram = derive2 { name="cotram"; version="0.4-4"; sha256="152jxkfwcqs1k7xcr1dlqbf0jpc9423g48dxwgjy3bvqnwgi6k21"; depends=[alabama basefun Matrix mlt survival tram variables]; }; cotrend = derive2 { name="cotrend"; version="1.0.2"; sha256="17h67vnpnlv11bf3ka5mlnah9bizxjhvicsvbygy91dqbhjhj9wb"; depends=[xts]; }; couchDB = derive2 { name="couchDB"; version="1.4.1"; sha256="1n99amvnsjp88y091603hjsvp243c5i6dbrsvdjfmzgj5dsrv70m"; depends=[bitops httr RCurl rjson]; }; + countDM = derive2 { name="countDM"; version="0.1.0"; sha256="14mm2pmzfca7z4l8a4pfv7xjcyljrs2k0vbsakxnngn7pwvq2y9v"; depends=[lamW maxLik miscTools numbers]; }; countHMM = derive2 { name="countHMM"; version="0.1.0"; sha256="12z0nz7in2msb5wa5yyjxx19ih8psw06m7xwlapvjksslippp6gs"; depends=[]; }; + countSTAR = derive2 { name="countSTAR"; version="1.0.1"; sha256="1331fpy0nyd0hf939lpg2km97ml5p1nfvzxx2aqj4s00c8fv32qi"; depends=[coda dbarts FastGP gbm KFAS Matrix randomForest Rcpp RcppArmadillo spikeSlabGAM splines2 TruncatedNormal truncdist]; }; countToFPKM = derive2 { name="countToFPKM"; version="1.0"; sha256="0h89knii8zkbq0lw7yn3qzak30s7bifq53ga4vy6za6hqwc53x2j"; depends=[circlize ComplexHeatmap]; }; countTransformers = derive2 { name="countTransformers"; version="0.0.6"; sha256="14n2sv7wqzslrzg0ag473ljj9mvha94161p5yh2h9l1vx7xliimf"; depends=[Biobase limma MASS]; }; countcolors = derive2 { name="countcolors"; version="0.9.1"; sha256="1gnwmw3inh8asbk6qba34vzx1k2cnh4m9d1346gxhzhlxvl6xiza"; depends=[colordistance jpeg png]; }; @@ -7752,7 +7847,8 @@ in with self; { covequal = derive2 { name="covequal"; version="0.1.0"; sha256="1qj6djqf1rnjmnaz1nryj9dc104082w258dzjjp5q18gg1ck8v0c"; depends=[corpcor RMTstat]; }; covfefe = derive2 { name="covfefe"; version="0.1.0"; sha256="178qc77y4bn04qad3g70wr8y4v0ggyg807w67m8wvhbcxqr8yq7c"; depends=[tokenizers]; }; covglasso = derive2 { name="covglasso"; version="1.0.3"; sha256="1201z49w7lacf479gp7q2v5lv8vmprppj656zzi5a4yynm7x2sll"; depends=[Rcpp RcppArmadillo]; }; - covid19_analytics = derive2 { name="covid19.analytics"; version="2.1.3"; sha256="00ywgrzrzzsdvxd4zyimwl81pqlv9m68qv4ba7hg8mnj87q3vi3w"; depends=[ape collapsibleTree deSolve dplyr DT gplots htmlwidgets pheatmap plotly readxl rentrez shiny shinycssloaders shinydashboard]; }; + covid19_analytics = derive2 { name="covid19.analytics"; version="2.1.3.1"; sha256="120ska2iyiihqb1mml5s28sav4d6cbs3lad5rfj6zi8lblli8ini"; depends=[ape collapsibleTree deSolve dplyr DT gplots htmlwidgets pheatmap plotly readxl rentrez shiny shinycssloaders shinydashboard]; }; + covid19br = derive2 { name="covid19br"; version="0.1.5"; sha256="14h0xhcsadx8nzxxlp0givw3xq648qmpwgglx2w30aad1m9y5m8w"; depends=[curl data_table dplyr httr rlang sf tidyr]; }; covid19brazil = derive2 { name="covid19brazil"; version="0.1.0"; sha256="014i0wnr7nn6knyz28hv9dymkr5yy2qwd2jqybzjdlfikf42baba"; depends=[devtools dplyr]; }; covid19dbcand = derive2 { name="covid19dbcand"; version="0.1.1"; sha256="0864xixdxzaj697al0c2gq3nk05q1pn0pc9lc2dyki71g5r67i7h"; depends=[]; }; covid19france = derive2 { name="covid19france"; version="0.1.0"; sha256="11072mc794l0m84k2b08zhyfvxf6n6ym91i7kkm3cbirxp6bhnqy"; depends=[dplyr glue lubridate magrittr readr stringr tidyr]; }; @@ -7764,6 +7860,7 @@ in with self; { covid19us = derive2 { name="covid19us"; version="0.1.9"; sha256="1vzxvrifs49v66mc85nxfmpk82hcjrr3lpw0mwy3wj7r5vxdrwh0"; depends=[curl dplyr glue httr lubridate magrittr purrr snakecase stringr tibble tidyr]; }; covidcast = derive2 { name="covidcast"; version="0.4.5"; sha256="0d9fhb3akm8rg4snq7biix2z7rjf03zsyfrbq2xxnf12hk52gixm"; depends=[dplyr ggplot2 httr MMWRweek purrr rlang sf tidyr]; }; covidmx = derive2 { name="covidmx"; version="0.7.7"; sha256="1m73pxpn080w7sby88spz2pfjw1v479m9fa74ag25mkdymfbh02d"; depends=[cli DBI dplyr duckdb fs pins RCurl readr readxl rlang stringr tibble tidyr]; }; + covidnor = derive2 { name="covidnor"; version="2023.05.18"; sha256="1aidi1bwsp1a8iym5b6chmv95cxrafhjgzn1zaajbijlgrjdqixc"; depends=[data_table]; }; covidprobability = derive2 { name="covidprobability"; version="0.1.0"; sha256="00kiwxhkbq70650azgd6ylh7w7w4h5l8l7rmr2bijlm05xn3g154"; depends=[]; }; covidsymptom = derive2 { name="covidsymptom"; version="0.9.3"; sha256="0svfc911n6cl056vn7l9khg4c6rc54qhxsgjg3jpxqvikyqmmrx7"; depends=[]; }; covr = derive2 { name="covr"; version="3.6.2"; sha256="0ns8xbq1l21mg8p2aiqv5h306a3vpn64j6jrgzbv8iv1a7kqrrmc"; depends=[crayon digest httr jsonlite rex withr yaml]; }; @@ -7789,7 +7886,7 @@ in with self; { cpfa = derive2 { name="cpfa"; version="1.0-4"; sha256="0xqr23bgqz7g3i86hkyaqvsphplwszgqp404bbn2r4i78gyndfjg"; depends=[doParallel e1071 foreach glmnet multiway nnet randomForest]; }; cpi = derive2 { name="cpi"; version="0.1.4"; sha256="1gz92jcl8wg2vp8qhnkn37l2xs8wjdbjvnga22v9n943k9zsk2kh"; depends=[foreach knockoff lgr mlr3]; }; cpk = derive2 { name="cpk"; version="1.3-1"; sha256="1njmk2w6zbp6j373v5nd1b6b8ni4slgzpf9qxn5wnqlws8801n73"; depends=[]; }; - cplm = derive2 { name="cplm"; version="0.7-10"; sha256="0mqjk10265hq9bc5ihmgbx1l8fzay1gpdlvx3pirqmvr3w1kwlxk"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; + cplm = derive2 { name="cplm"; version="0.7-11"; sha256="0pcq5ska1v6kvp8ipw9clczk4w0p10lbxw2xnkhps0wqdrspsqwm"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; cplots = derive2 { name="cplots"; version="0.5-0"; sha256="12nac8hywhsfh2fcv30w36la46hvvp5mwc2rrq34smraig0dq8f3"; depends=[circular]; }; cpm = derive2 { name="cpm"; version="2.3"; sha256="07zbvc5jkwv76lkzby6r073fxjsqgnrdl2w9lcph577knnip89jx"; depends=[]; }; cpmBigData = derive2 { name="cpmBigData"; version="0.0.1"; sha256="0fdch6hj6l620gj0pk8ffrl9j2rmd9jlin7yx7myfy46qij1cxpi"; depends=[benchmarkme doParallel foreach Hmisc iterators rms SparseM]; }; @@ -7820,6 +7917,7 @@ in with self; { crawl = derive2 { name="crawl"; version="2.3.0"; sha256="0qn64n54lsj56r5xj7xk8irns95724zmdv0nscsm3jd06fqybgj4"; depends=[dplyr lubridate magrittr mvtnorm purrr Rcpp RcppArmadillo rlang sf sp tibble]; }; crayon = derive2 { name="crayon"; version="1.5.2"; sha256="0yjsnhifr3nipaid0q11jjglvqmp51g9d2xdh9kfxh5knl2sbabh"; depends=[]; }; crayons = derive2 { name="crayons"; version="0.0.2"; sha256="0mww2s57pkc6i0hg9xmm4j35gn1r6wyr7k4dksg4mhifbi1vwc43"; depends=[ggplot2]; }; + crc32c = derive2 { name="crc32c"; version="0.0.2"; sha256="149bwwpgw69j4msqplrv7yym2fjs7c9v7sq8418lzz9szyj87dzg"; depends=[tidyCpp]; }; crch = derive2 { name="crch"; version="1.1-2"; sha256="1iwamq8iq51sbwbis2fc783y7a0k4a7v103f4mx7mp6wrcpsg9rq"; depends=[Formula ordinal sandwich scoringRules]; }; crctStepdown = derive2 { name="crctStepdown"; version="0.2.1"; sha256="1v6r0w9wrwa7hwyyhzdybv1mshdw3wxa098mbn48101dhhy75945"; depends=[fastglm ggplot2 ggpubr lme4 Rcpp RcppArmadillo rlang stringr]; }; createLogicalPCM = derive2 { name="createLogicalPCM"; version="0.1.0"; sha256="1vm4pwyzpddzsfnji0qfvv9pmz6rvmss9g58q4laqi4q3r643v14"; depends=[]; }; @@ -7828,7 +7926,8 @@ in with self; { credsubs = derive2 { name="credsubs"; version="1.1.1"; sha256="19l3vsjxd9lvaf67l61x9l0j4y124p93dfqzw7rl1ya5sxbdzs7a"; depends=[]; }; credule = derive2 { name="credule"; version="0.1.4"; sha256="0kwjjkavch21grx845kdcansaj0g407v7z3wmhy4whra9ic12y76"; depends=[]; }; cregg = derive2 { name="cregg"; version="0.4.0"; sha256="1a34jhdk4r9ywsrc5dc8wq5am3059cli60f6n2n8j04ls13fvlkd"; depends=[ggplot2 ggstance lmtest sandwich scales survey]; }; - crew = derive2 { name="crew"; version="0.0.5"; sha256="1v0vbg8k0lmy8wqldf7vp7i4j6dcl8pbrrqyr20fadg2qidm76gm"; depends=[bench callr getip mirai nanonext parallelly ps R6 rlang tibble tidyselect withr]; }; + crew = derive2 { name="crew"; version="0.2.1"; sha256="1jv39j0n96dwkgww8h58k5sfziw15w4k08w70a4r2pfjqmw702gn"; depends=[getip mirai nanonext processx ps R6 rlang tibble tidyselect]; }; + crew_cluster = derive2 { name="crew.cluster"; version="0.1.0"; sha256="0l5pgm0hgr5286fczjmm4z1svl49aam5ypfg930cnx0l835w0181"; depends=[crew lifecycle R6]; }; crfsuite = derive2 { name="crfsuite"; version="0.4.1"; sha256="0vm4gpyb9qxlj0xixnmjs8hv3xi3ydzd8dbymk7f78nafdvqwkxy"; depends=[data_table Rcpp]; }; cricketdata = derive2 { name="cricketdata"; version="0.2.2"; sha256="1q7c8ljc6qhggk854mwg8hxdy1b5rih9qxn5j5fk8cj4qs89rgw8"; depends=[dplyr janitor lubridate magrittr progress readr rvest stringr tibble tidyr xml2]; }; cricketr = derive2 { name="cricketr"; version="0.0.26"; sha256="1y1zf9f59v95knggq5nna5rp7fqpv1swwvkajwqbpicc12g2azq4"; depends=[dplyr forecast ggplot2 httr lubridate plotrix scatterplot3d XML]; }; @@ -7836,9 +7935,10 @@ in with self; { crimedata = derive2 { name="crimedata"; version="0.3.1"; sha256="16xccfh64qza617d7k9swahchij57skh8wwnj7gxlpasknx11wwf"; depends=[digest dplyr httr purrr rlang sf stringr]; }; crimeutils = derive2 { name="crimeutils"; version="0.5.1"; sha256="0jsh2b1kv8r9x8sx1s2x6dpc8jyfnjsinycqb5wck5jcsswswgd6"; depends=[dplyr ggplot2 gridExtra gt magrittr readr rlang scales stringr tidyr]; }; crisp = derive2 { name="crisp"; version="1.0.0"; sha256="1gs8jnd9y9pd55w6kwv9mvmg3wd8hjiw3lwx7k242pxccsxklfxq"; depends=[MASS Matrix]; }; - criticality = derive2 { name="criticality"; version="0.9.2"; sha256="0177dx8y93gg37244615y17lidk7hmji5k1dlrm3670flfnigf28"; depends=[bnlearn caret dplyr evd fitdistrplus ggplot2 keras magrittr reticulate scales]; }; + crispRdesignR = derive2 { name="crispRdesignR"; version="1.1.7"; sha256="0z0sc0plq6x68b70pprzr7p7wpv8zsvg9ygi0gv1djh5j4wiaiz1"; depends=[BiocGenerics Biostrings DT gbm GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors shiny stringr vtreat]; }; + criticality = derive2 { name="criticality"; version="0.9.3"; sha256="0cy08v2lqld9y9cc140hxk734r9pb66cx2c04303c9rl81gy1cmk"; depends=[bnlearn caret dplyr evd fitdistrplus ggplot2 keras magrittr reticulate scales]; }; criticalpath = derive2 { name="criticalpath"; version="0.2.1"; sha256="1b8iwvdlq5czd7p7yy6il3irrcarc23cy26vprycnyjll38lcfjz"; depends=[dplyr igraph magrittr R6 stringr tibble]; }; - critpath = derive2 { name="critpath"; version="0.1.5"; sha256="0fqzqxskvxlxggq0mfk3bqgyj2lj49ninklqwgcgrhklnry8j93q"; depends=[DiagrammeR ggplot2 reshape2]; }; + critpath = derive2 { name="critpath"; version="0.2.0"; sha256="185nl0jzw4k5pi8rq3afjksqqlyy41k0hyx007hr97y4i4lw8306"; depends=[DiagrammeR dplyr ggplot2 reshape2 stringr]; }; crmPack = derive2 { name="crmPack"; version="1.0.3"; sha256="1djpkvl2d8k0s5a9qj5jamp3r7c9g8w9ki9f4ny85m8lghbvl2zr"; depends=[GenSA ggplot2 gridExtra MASS mvtnorm rjags]; }; crmReg = derive2 { name="crmReg"; version="1.0.2"; sha256="0y6xb0sxhsqcmcwbkwvk70snwqhxgzl513ld9dp53cm88qdwaj1r"; depends=[FNN ggplot2 gplots pcaPP plyr robustbase rrcov]; }; crmn = derive2 { name="crmn"; version="0.0.21"; sha256="0wp99fsw7y859gp1x22f77r9rv1m0xspbzhzgshzf7hi86xb57k5"; depends=[Biobase pcaMethods]; }; @@ -7850,20 +7950,21 @@ in with self; { crop = derive2 { name="crop"; version="0.0-2"; sha256="1yjpk7584wrz9hjqs21irjnrlnahjg8lajra9yfdp6r927iimg1l"; depends=[]; }; cropDemand = derive2 { name="cropDemand"; version="1.0.2"; sha256="0fffrwwk91gzhb2gn8m0nlnv3gmhdv2srzjblysgkh4bnqmrjvq2"; depends=[dplyr ggplot2 ncdf4 raster rgdal tidyr]; }; cropZoning = derive2 { name="cropZoning"; version="1.0.2"; sha256="134spdw7qfp0f7xsjyz35xfmabqdbx37z8isf5mfg6q8rqnjhc9y"; depends=[ggplot2 ncdf4 raster rgdal tidyr]; }; - cropcircles = derive2 { name="cropcircles"; version="0.2.1"; sha256="1lfkpg9l31l96cn3i2ssw6qrz5nw6pcip50x1gv69x4bzsgjzsy0"; depends=[glue magick purrr]; }; + cropcircles = derive2 { name="cropcircles"; version="0.2.3"; sha256="1ggiw0qxwv3j36dhiq7fvw4zj0lqqsfcp9756hsr0cb83srfczwb"; depends=[glue magick purrr]; }; cropdatape = derive2 { name="cropdatape"; version="1.0.0"; sha256="19bn0apx4p8hnz388zg7sq59qv89vv8k5php317kcv7ai2k2gh34"; depends=[]; }; - cropgrowdays = derive2 { name="cropgrowdays"; version="0.1.1"; sha256="0jgdfhywnlsz2mxb4skkrxf9fb55qyidd6y6nhb9324jm8d3xl0a"; depends=[dplyr httr lubridate magrittr purrr purrrlyr tibble]; }; + cropgrowdays = derive2 { name="cropgrowdays"; version="0.2.0"; sha256="1vvyknbgnz0d5f4rjl3vw4a9adzgwqkzxb2wnf2x6yqfhniw6s2p"; depends=[dplyr httr lubridate purrr purrrlyr tibble]; }; crops = derive2 { name="crops"; version="1.0.3"; sha256="0c1xvfnr4dh720x0i3f6nvmzgv8zbs7cvp8vfa341yb92pz4d6s0"; depends=[cowplot ggplot2 magrittr memoise Rdpack reshape sets tibble tidyverse]; }; crossdes = derive2 { name="crossdes"; version="1.1-2"; sha256="0nc9jd83mm03qpd3r3hfmrf615yvvmib9kk9dh1hgz12pxhffray"; depends=[AlgDesign gtools]; }; + crosshap = derive2 { name="crosshap"; version="1.2.2"; sha256="18r4m5fplpiabgwir78qfacj0781ykqxbyfkf5zxnzs7yr0d1gl2"; depends=[cli clustree data_table dbscan dplyr ggdist ggplot2 ggpp gridExtra gtable magrittr patchwork rlang scales tibble tidyr]; }; crossmap = derive2 { name="crossmap"; version="0.4.0"; sha256="079ibxhm6877nfdqf88fhg9fjdn3vbs44jprrbhxmmbbd30nma4v"; depends=[backports cli dplyr generics lifecycle purrr rlang vctrs]; }; - crossnma = derive2 { name="crossnma"; version="1.0.1"; sha256="0zcgz87knshvn5sifk30jmmx8kiaqsxrfj0d39wzbx5yxifi21l9"; depends=[coda dplyr ggplot2 magrittr netmeta plyr rjags rlang tidyr]; }; + crossnma = derive2 { name="crossnma"; version="1.1.0"; sha256="0s23lz9v8crpksb78rk9rzin9hzva8y490460jjw6rfd0cdc0ilc"; depends=[coda dplyr ggplot2 magrittr meta netmeta plyr rjags rlang tidyr]; }; crossrun = derive2 { name="crossrun"; version="0.1.1"; sha256="1v2khjb77g63ls6s15z9hy81z4hyf89g58jxjl94jrkznq1c4fa4"; depends=[Rmpfr]; }; - crosstable = derive2 { name="crosstable"; version="0.6.1"; sha256="1syavk3yad7r3fybg37ppc3m6c5gz018bikxac6gdl887p858wi9"; depends=[checkmate cli dplyr flextable forcats glue lifecycle officer purrr rlang stringr tibble tidyr]; }; + crosstable = derive2 { name="crosstable"; version="0.6.2"; sha256="1i8ij5vzzjrxvbnbfxkdm37yl53y154l6csfi4d7i285x8k4bp9b"; depends=[checkmate cli dplyr flextable forcats glue lifecycle officer purrr rlang stringr tibble tidyr]; }; crosstalk = derive2 { name="crosstalk"; version="1.2.0"; sha256="180y7mhpj17axpadwhh7s0qvrpdnag7g977vk256l96d6nmvlds2"; depends=[htmltools jsonlite lazyeval R6]; }; - crosstalkr = derive2 { name="crosstalkr"; version="1.0.1"; sha256="0fwrb8sa1gdjhml079vqsry9q6a609iyb1d8b3p18hhc8k4p6y0m"; depends=[doParallel dplyr ensembldb foreach ggplot2 igraph iterators magrittr Matrix Rcpp readr rlang STRINGdb stringr tibble tidyr withr]; }; + crosstalkr = derive2 { name="crosstalkr"; version="1.0.2"; sha256="0zbpy4lc4q6h9iz3gd1nfv96cc90ndbnr22l9n0hqia9jq9bkz7s"; depends=[doParallel dplyr ensembldb foreach ggplot2 igraph iterators magrittr Matrix Rcpp readr rlang STRINGdb stringr tibble tidyr withr]; }; crossurr = derive2 { name="crossurr"; version="1.0.6"; sha256="16fq6hdfc6nsdijj63fji3bn3hp40m350qjxhf8a3xs5j86vf43j"; depends=[dplyr gbm glmnet glue pbapply purrr ranger RCAL rlang SIS SuperLearner tibble tidyr]; }; crossval = derive2 { name="crossval"; version="1.0.4"; sha256="0vshlyc6w4kfs03n56ylapiqgdyday7068wmfsphj4lhw322s4yp"; depends=[]; }; - crossvalidationCP = derive2 { name="crossvalidationCP"; version="1.0-2"; sha256="0gwlpfqk3jsamkdx0sjvn4wmmcrdicgparks298hvi4gjlibp7mc"; depends=[changepoint FDRSeg stepR wbs]; }; + crossvalidationCP = derive2 { name="crossvalidationCP"; version="1.1"; sha256="0cmny8sjz4ampvi1jc2h4dh3x930vnwv8png6xygs2vb6p19f2ph"; depends=[changepoint fpopw wbs]; }; crosswalkr = derive2 { name="crosswalkr"; version="0.2.6"; sha256="1rxd6vy7vdrawmg7zkydl1f2wwklnzgh9dsnxbg966xrr3l9x1n9"; depends=[haven labelled readr readxl tibble]; }; crossword_r = derive2 { name="crossword.r"; version="0.3.6"; sha256="1s31613s4qxxspka9bhgq3rq8xraf48mwfv6phvz6v06gijh64lr"; depends=[dplyr jsonlite magrittr R6 r6extended stringr]; }; crov = derive2 { name="crov"; version="0.2.0"; sha256="1i3a5nagzinsla6p3wjyj3x12gyfqs6vapaqxgr3dh6m727jw5i5"; depends=[gtools VGAM]; }; @@ -7879,7 +7980,7 @@ in with self; { crsra = derive2 { name="crsra"; version="0.2.3"; sha256="1rkqm88zmvp9gw442cby6qpvfw4pfw65wz0gyl2h37w87c3wwvrw"; depends=[digest dplyr knitr purrr rcorpora readr tibble tidytext]; }; crsuggest = derive2 { name="crsuggest"; version="0.4"; sha256="044llamxlrva5va39yzpvsmdjqn56ij7jjll73mmjg7ka0rqc5dj"; depends=[dplyr mapview purrr sf units]; }; crtests = derive2 { name="crtests"; version="0.2.1"; sha256="0z8idz37dgwvi1q2vryldii7fn9yxd32gds77ml76jfplxbkikpd"; depends=[caret plyr stringr]; }; - crul = derive2 { name="crul"; version="1.3"; sha256="0b8y12wb5kjylr8b4a2iarb5rpw1ydinw3lxp2ssq91pidyn2n40"; depends=[curl httpcode jsonlite mime R6 urltools]; }; + crul = derive2 { name="crul"; version="1.4.0"; sha256="18n9ga0ah628k83qin75ys0wipc9dgc25xnafcj400jp85g42l4f"; depends=[curl httpcode jsonlite mime R6 urltools]; }; crunch = derive2 { name="crunch"; version="1.30.2"; sha256="177gbgvwlgqv2l43hgg2w9zxf92wwksv0j0fk1yvfiw1qxnsf170"; depends=[abind crayon curl httpcache httr jsonlite]; }; crunchy = derive2 { name="crunchy"; version="0.3.3"; sha256="15w72kmizsxkj1wx3nqny6329m2041mxyzi4nxh8l3hfmaisb4qm"; depends=[crunch httpcache miniUI rstudioapi shiny]; }; cruts = derive2 { name="cruts"; version="1.1"; sha256="1ih6h9qk4yflzars00d61smjqj7s4bfvc2ikp6vlki9f6k012xcx"; depends=[lubridate ncdf4 raster sp stringr]; }; @@ -7888,12 +7989,11 @@ in with self; { cryptoverse = derive2 { name="cryptoverse"; version="0.1.0"; sha256="169afkvinngwhrxi50a4r07lhgb6x9dxjbi3bj0gc7iyxa8cl9c5"; depends=[]; }; cryptowatchR = derive2 { name="cryptowatchR"; version="0.2.0"; sha256="0lf94l5klkx1j1fgaq2qjqr2y8ckm5raa3a508x72ph45v10pfyq"; depends=[httr jsonlite lubridate]; }; cryst = derive2 { name="cryst"; version="0.1.0"; sha256="04da19dy3mkngd3ma44cd8cdkb5acjy9lbhfipa9flp339j1pp57"; depends=[flux pracma]; }; - csa = derive2 { name="csa"; version="0.7.0"; sha256="0cmabcvfxfplnzx7mdsfas3jhgz44y86411amaphm75zmv8khcif"; depends=[data_table doParallel foreach ggplot2 ggpubr Lmoments moments raster reshape2 scales]; }; csampling = derive2 { name="csampling"; version="1.2-2.1"; sha256="0kqx7j96yafsqi9cz551fqpwkbcabxl8zpwa2jms862z41xbgsv3"; depends=[marg statmod survival]; }; csci = derive2 { name="csci"; version="0.9.3"; sha256="00s1gx5h141w1vjw8j3k7bn71c4dy80m6wakd1c1z7rmx1jbfp6m"; depends=[exactci]; }; - csdata = derive2 { name="csdata"; version="2022.11.22"; sha256="0gcjdkhbfg3dwivk0w23rdrjcq5vsa96x8l1fwjr86q4h4dyl8lw"; depends=[data_table]; }; + csdata = derive2 { name="csdata"; version="2023.5.22"; sha256="0f0yc4kcfsbzssdlfhkk9n5v586f3jdgbyc1djf9nhlbn03nqbdq"; depends=[data_table]; }; cshapes = derive2 { name="cshapes"; version="2.0"; sha256="0c3q85whvp28zlm4k1570kwc5qvl2fmaszx9dpmfcdqv6m19f9ks"; depends=[rmapshaper sf sp]; }; - csmaps = derive2 { name="csmaps"; version="2022.12.15"; sha256="0qr68jbq6wzrrx6a701cwighcgbyg1ppbys0iajgc1v04z625jhh"; depends=[data_table]; }; + csmaps = derive2 { name="csmaps"; version="2023.5.22"; sha256="02w3g6qc928fbic462nn22s6fcqxr4v9hhhrv632azcc2x83k100"; depends=[data_table]; }; csn = derive2 { name="csn"; version="1.1.3"; sha256="102w1qh9hgz4j9lh5hnbw1z3b7p034si73q4pkk564a2mhzlksw4"; depends=[mvtnorm]; }; csodata = derive2 { name="csodata"; version="1.4.1"; sha256="1x5fvh79s1bivkw5gszx951mc7vw09xplz5yr7r7453gb32pfr7c"; depends=[dplyr httr jsonlite lifecycle lubridate R_cache reshape2 rjstat sf tidyr]; }; cspec = derive2 { name="cspec"; version="0.1.2"; sha256="049vynbffxyd5zwxwyz1jv05zgq7zrx1ypzv5j62ph64gl42m13p"; depends=[]; }; @@ -7902,9 +8002,10 @@ in with self; { csranks = derive2 { name="csranks"; version="1.0.1"; sha256="00idr16p9pxih88z7c22n9zwax996qm1fwslkp7x5b2p8fcxihp4"; depends=[cli ggplot2 MASS scales]; }; cssTools = derive2 { name="cssTools"; version="1.0"; sha256="1p8c21c1hilmd9ibqyz493fy1x95hb2pidybsyicch53gkb542br"; depends=[sna]; }; cstab = derive2 { name="cstab"; version="0.2-2"; sha256="1lr401fvi88f4jv8jh4brx95ymncfw8clripz1r6a46inj80nj4j"; depends=[cluster fastcluster Rcpp]; }; - cstime = derive2 { name="cstime"; version="2022.11.22"; sha256="12nammfv9abf888zkhg3ng59r1v2pmxk9363p97mv8ssbjiil46x"; depends=[data_table dplyr magrittr purrr stringr]; }; + cstidy = derive2 { name="cstidy"; version="2023.5.24"; sha256="01i5b1x6xfg8fbkhaam22ap64x6bqman5b5y57f07wiy413m65j2"; depends=[crayon csdata cstime data_table digest ggplot2 magrittr stringr]; }; + cstime = derive2 { name="cstime"; version="2023.5.3"; sha256="0x6nilc1971fjb5s7im6jp3az13r7rd5z3pc0y7kglggp33aqw6i"; depends=[data_table magrittr]; }; csurvey = derive2 { name="csurvey"; version="1.4"; sha256="0d005vyz2q06xp07gssxxjwmi0m4kal839wsghqg5mldvi5qn2g4"; depends=[cgam coneproj dplyr MASS Matrix purrr survey tidyselect]; }; - csutil = derive2 { name="csutil"; version="2022.11.24"; sha256="0wa7isv73f7hn5s58w0wrbfb91i6j01vsy3n5iryj19wjw9a34cq"; depends=[data_table ggplot2 magrittr]; }; + csutil = derive2 { name="csutil"; version="2023.4.25"; sha256="0yh72ddymkqi46xqjvmgqkvn2a5bl3qyrrr37w0mvdx89zr95yxn"; depends=[data_table ggplot2 magrittr]; }; csv = derive2 { name="csv"; version="0.6.2"; sha256="1mynaia16jm28qi597xg7kf4w85vsxg5p83xbcbbr9di49vxqlr8"; depends=[data_table stringi]; }; csvread = derive2 { name="csvread"; version="1.2.1"; sha256="1r9jvf7nbkxgl6dycdnb89yh39vacrzy8z04g8qz225rklg5b288"; depends=[]; }; csvwr = derive2 { name="csvwr"; version="0.1.7"; sha256="1yh330kh1q06f2vn8jvgirz4q7wld1ylnkjpnjh17nqq0d2lsmk2"; depends=[cli jsonlite magrittr purrr readr rlang stringr]; }; @@ -7917,14 +8018,14 @@ in with self; { cthist = derive2 { name="cthist"; version="1.4.1"; sha256="1rkbvqdqnjj9d0xg7axwkp706mnx48afinwxgl61q8argznyzh23"; depends=[assertthat dplyr httr jsonlite magrittr readr rlang rvest stringr tibble]; }; cthreshER = derive2 { name="cthreshER"; version="1.1.0"; sha256="18b66d08dq8pvnixmm4ir4r800b37z5yillaa88l317mdilbci9s"; depends=[Matrix]; }; ctl = derive2 { name="ctl"; version="1.0.0-8"; sha256="0af53da5m469mm7pmy1nr3zxcjjg9wrs01scc042nr5rnysjy4l4"; depends=[MASS qtl]; }; - ctmcd = derive2 { name="ctmcd"; version="1.4.2"; sha256="1gmm64z4p1vkh2fkbm4ayc67i6rxkxvha8fwg4zaf59bmxi7qnnc"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; }; + ctmcd = derive2 { name="ctmcd"; version="1.4.3"; sha256="1xlhy816qcidkhpybkfmi2a59x5aajhh2407ninnnimlxk45kilh"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; }; ctmcmove = derive2 { name="ctmcmove"; version="1.2.9"; sha256="1pxyxbbhfa8arqfb7qw10ya1b8hy9ylqbqqzys6d9dsixvdk98h0"; depends=[fda gdistance Matrix raster sp]; }; ctmle = derive2 { name="ctmle"; version="0.1.2"; sha256="0qc1ji8fjpr88dn6mrpijfcx1ij4zkrxsbcw405hxal7rli0gyp3"; depends=[glmnet SuperLearner tmle]; }; ctmm = derive2 { name="ctmm"; version="1.1.0"; sha256="1npx017c4w8689ig36r54fbl40h0hd0crh3n64ypbid2xxb2j0ck"; depends=[Bessel data_table digest expm fasttime Gmedian gsl manipulate MASS numDeriv pbivnorm pracma raster rgdal shape sp statmod]; }; ctmva = derive2 { name="ctmva"; version="1.1.0"; sha256="0cc5nxd0c51qpq87j3wp4accj5fwizan3ln2f91g52z8k5lz96hy"; depends=[fda polynom]; }; ctpm = derive2 { name="ctpm"; version="1.0.1"; sha256="1bycdh3mbimmfvv3yb50c8rwcmkbjj0jwnfiynsp2h56y3dmzc1r"; depends=[ape ClusterR ctmm slouch]; }; ctqr = derive2 { name="ctqr"; version="2.0"; sha256="0srrlgqxpp4a46wqr83zpb3xr49pf70b0n8bv9qp8ffak20d2hpj"; depends=[pch survival]; }; - ctrdata = derive2 { name="ctrdata"; version="1.12.1"; sha256="1m12vjwvzrwwb4d513vk171r25ww92qqv7rd2c3srmwzfi9ngy74"; depends=[clipr curl dplyr httr jqr jsonlite lubridate nodbi rvest stringi xml2]; }; + ctrdata = derive2 { name="ctrdata"; version="1.13.2"; sha256="1n38bwcr26vmiwc8jwl0mw15vwbvvkd9gi0mvsr1arzp846lkcyw"; depends=[clipr curl httr jqr jsonlite lubridate nodbi stringi tibble xml2]; }; ctrialsgov = derive2 { name="ctrialsgov"; version="0.2.5"; sha256="0hdh1fdfaja8amf7fkvk1c6yif703132bvacq0j9pk5jr97czgpw"; depends=[DBI dplyr ggplot2 htmlwidgets lubridate Matrix plotly purrr rlang stringi tibble]; }; ctrlGene = derive2 { name="ctrlGene"; version="1.0.1"; sha256="0x7j11v7jj4k1jml6lrnjq79awhrvsm3pig1yxsd337jlfml3ra9"; depends=[psych]; }; ctsem = derive2 { name="ctsem"; version="3.7.6"; sha256="1nhrxyq9kv3kzyskjmskh79z9mhzz6ap9bq0df1f7h4v73425mjc"; depends=[BH cOde data_table Deriv expm ggplot2 MASS Matrix mize mvtnorm plyr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tibble]; }; @@ -7948,13 +8049,14 @@ in with self; { cuperdec = derive2 { name="cuperdec"; version="1.1.0"; sha256="1vvkbkb3dp38xzxxdm20n6vr8yifppn1clzzcvb2rhqk9d17cdiw"; depends=[dplyr ggplot2 magrittr readr rlang tidyr]; }; curephEM = derive2 { name="curephEM"; version="0.2.5"; sha256="1s0wrjzkp8wn8k0p5k9m7ljh104ay50izsyyvgb9qlb9yaggv1iz"; depends=[Matrix survival]; }; curl = derive2 { name="curl"; version="5.0.0"; sha256="1cn9b6xcc6xp2q66pkla6xrq4v6rbpxfcr3gizx4z48knp4wmwyp"; depends=[]; }; + currencyapi = derive2 { name="currencyapi"; version="0.1.0"; sha256="1d21nsmnzd89j86rlhicplj6ryp9mvs2jky8p55jc33zn48sywb6"; depends=[httr jsonlite]; }; currentSurvival = derive2 { name="currentSurvival"; version="1.1"; sha256="01rlm4n3qfa71wkd6pbkdhcgll0y13zrcbjqxy0gssvrgnwwcfsx"; depends=[cmprsk survival]; }; currr = derive2 { name="currr"; version="0.1.2"; sha256="0dfcgnv71cwzsglg725qsf3vg54yar3ps4f9njwa9183k1gypvqp"; depends=[broom clisymbols crayon dplyr job pacman purrr readr rstudioapi scales stringr tibble tidyr]; }; curry = derive2 { name="curry"; version="0.1.1"; sha256="1ps9hvbnb02m0b8hlw4admwbziyjvswj08ldi2dk3ymnrpawcc29"; depends=[]; }; cursr = derive2 { name="cursr"; version="0.1.0"; sha256="08051bnxags2arn296mxwc84j55shhsfym9hd062amdvm23nxd18"; depends=[keypress]; }; curstatCI = derive2 { name="curstatCI"; version="0.1.1"; sha256="0igqdv0fzzji10gz3j3ir8qxpy7vdjfl137067rc28qzbrl2sy2c"; depends=[Rcpp]; }; curtailment = derive2 { name="curtailment"; version="0.2.0"; sha256="1pk3vx9lbmvc1sj9n4n9vgbpx3xj71by0pl82ii10g69qwfllmph"; depends=[data_table ggplot2 ggthemes gridExtra pkgcond]; }; - curvHDR = derive2 { name="curvHDR"; version="1.2-1.1"; sha256="0fr1qiq2qkd2nmkz6n9vrc42jdsyaz1h7qf2n5aapnpk7155c869"; depends=[feature geometry hdrcde KernSmooth ks misc3d ptinpoly rgl]; }; + curvHDR = derive2 { name="curvHDR"; version="1.2-2"; sha256="05i4q6lrzm23nvs5wkxxpa9c4ldz3khgsk5sw3cgzdzn3cm6a0xf"; depends=[feature geometry hdrcde KernSmooth ks misc3d ptinpoly rgl]; }; curveDepth = derive2 { name="curveDepth"; version="0.1.0.9"; sha256="10mhy2nyll4d1q71qnlsal0raccz3awd0j0vi5w58di9wlv1c241"; depends=[ddalpha Rcpp RcppArmadillo]; }; curvecomp = derive2 { name="curvecomp"; version="0.1.0"; sha256="0ykgbwnh32w61cjcg1nyqak42hx0jrsrpbra2wh3pgj9clg1qad2"; depends=[multcomp]; }; cusp = derive2 { name="cusp"; version="2.3.6"; sha256="0rpljddawrbq2q04fc426s57wbl3adp6mfkdv8bpjkfcyq2swbdh"; depends=[]; }; @@ -7968,7 +8070,6 @@ in with self; { cvCovEst = derive2 { name="cvCovEst"; version="1.2.0"; sha256="1787dw3vg1w6mv621qhcdcfmfcxwrjwrwc3hwxqqkhgimnwrn0hy"; depends=[assertthat coop dplyr ggplot2 ggpubr Matrix matrixStats origami purrr RColorBrewer Rdpack rlang RMTstat RSpectra stringr tibble]; }; cvGEE = derive2 { name="cvGEE"; version="0.3-0"; sha256="085qjm520l2441nakfxy851s6bfy5832b5fy54z5fp4xr1jn6snm"; depends=[]; }; cvTools = derive2 { name="cvTools"; version="0.3.2"; sha256="0b7xb6dmhqbvz32zyfbdvm9zjyc59snic6wp1r21ina48hchn3sj"; depends=[lattice robustbase]; }; - cvam = derive2 { name="cvam"; version="0.9.3"; sha256="1fq1xwxhpny8fy2l1a45vj9gj3czkifb1bnbi33dlf99vv1pml7r"; depends=[coda Formula]; }; cvap = derive2 { name="cvap"; version="0.1.3"; sha256="0dc1gc0yi7ga317xyn8rs078f5mqbq1i9zcfk9bifqip7b0qmhv1"; depends=[censable cli dplyr fs magrittr readr rlang stringr tidyr]; }; cvar = derive2 { name="cvar"; version="0.5"; sha256="066vn8flw9j0idmpi9wzvybgihdhwg3fjslx2isbrb11ldl1lwky"; depends=[gbutils Rdpack]; }; cvcrand = derive2 { name="cvcrand"; version="0.1.0"; sha256="0zdf41sjqyi7mybxhypfx1vpc15w7qj9jg9bav64qbk0q5nk7jyc"; depends=[tableone]; }; @@ -7980,14 +8081,15 @@ in with self; { cvwrapr = derive2 { name="cvwrapr"; version="1.0"; sha256="17h017p76y7sjcwik48ravygmyivj6kvkhqy5s9ch0nwzzcrzvj3"; depends=[foreach survival]; }; cwbtools = derive2 { name="cwbtools"; version="0.3.8"; sha256="1v7pan3d00km7yq03ym3xdvlqhwrlxg5w8y2dl34dlsm67xysxh1"; depends=[cli curl data_table fs httr jsonlite lifecycle pbapply R6 RcppCWB rstudioapi stringi xml2 zen4R]; }; cwot = derive2 { name="cwot"; version="0.1.0"; sha256="1qg9aizkz40sfm65b8sxcmj1232zb3ds8gds45lv0prf8alc7az3"; depends=[mvtnorm SPAtest]; }; - cxhull = derive2 { name="cxhull"; version="0.7.2"; sha256="1qhzsm59csdndyqmz3pqcsmblsipv28f6wzpq8qylkgak2d877pw"; depends=[data_table Morpho rgl Rvcg]; }; + cxhull = derive2 { name="cxhull"; version="0.7.3"; sha256="0k68da3sa3bn17aj525m0axk9yqzi6i966z6h95d727phg865rld"; depends=[data_table Morpho rgl Rvcg]; }; cxr = derive2 { name="cxr"; version="1.0.0"; sha256="12rx7hna3h84a2xb2ir43xgb3zfmh0fhn5wcdjklk2g94dmwid28"; depends=[mvtnorm optimx]; }; cxxfunplus = derive2 { name="cxxfunplus"; version="1.0.1"; sha256="19953p12yjmhqhjjiw6ymnvn7krnbndqc8b91rc12ymmfp9x2crr"; depends=[inline]; }; cycleRtools = derive2 { name="cycleRtools"; version="1.1.1"; sha256="1l7w2lm4s149ndd85v41pkdrdig6l3nmhl14bdx56aw8q57fxmb0"; depends=[Rcpp xml2]; }; cyclestreets = derive2 { name="cyclestreets"; version="0.6.0"; sha256="1w8am89xcjd6wklzcarh1kvayyma764jy7jkalf26r71qf3wpz2a"; depends=[checkmate curl dplyr geodist geojsonsf httr jsonlite magrittr progressr purrr R_utils RcppSimdJson sf stringr]; }; cyclocomp = derive2 { name="cyclocomp"; version="1.1.0"; sha256="0gky3svk02wiajw7nfjh30684h3qxili4bvsab0m7b6cggw6bgyd"; depends=[callr crayon desc remotes withr]; }; - cycloids = derive2 { name="cycloids"; version="1.0"; sha256="00pdxny11mhfi8hf76bfyhd1d53557wcbl2bqwjzlpw5x3vdnsan"; depends=[]; }; + cycloids = derive2 { name="cycloids"; version="1.0.1"; sha256="0bb1izvcn33l4y0sk5p0rirm0zdkbzn48bh3zirncnhl1vby4mpz"; depends=[]; }; cyclomort = derive2 { name="cyclomort"; version="1.0.2"; sha256="0qmfwhrp7bq7av0yc95xnz2sd1jxfaiys9smrk1kpclnynnra9rr"; depends=[flexsurv lubridate magrittr mvtnorm plyr scales survival]; }; + cyclotomic = derive2 { name="cyclotomic"; version="1.1.0"; sha256="16pzgzypa53krgw5a03wppsfq6pck42r4fpzf58klghgk68v84lp"; depends=[gmp intmap maybe memoise primes VeryLargeIntegers]; }; cyjShiny = derive2 { name="cyjShiny"; version="1.0.42"; sha256="1p3ifmaxbw5g57pp4v8hnvq3fsy7frpny9jgp0q1b3klg3dhsjwj"; depends=[base64enc graph htmlwidgets jsonlite shiny]; }; cylcop = derive2 { name="cylcop"; version="0.2.0"; sha256="1kh1h7zmk2d2p81ih1xyf3rv1g9gpjrdwyj3j812kp0krz71km4n"; depends=[circular copula cowplot data_table dplyr ggplot2 GoFKernel infotheo MASS mixR movMF plotly purrr Rdpack rgl rlang stringr transport viridis]; }; cymruservices = derive2 { name="cymruservices"; version="0.5.0"; sha256="1xhdvijybdy7312qdbp50881yix587pmym0hchnwb3h0vhjv553v"; depends=[memoise pingr stringi]; }; @@ -8023,7 +8125,7 @@ in with self; { dadjokeapi = derive2 { name="dadjokeapi"; version="1.0.2"; sha256="143xs3nkf6ynr83z5gggz318nvpnsbfmskl1ipavlzrqk785dlac"; depends=[beepr curl dplyr httr png]; }; dados = derive2 { name="dados"; version="0.1.0"; sha256="1jdna8s10qz50zrsrm36y1jx489sznd86akx2lwdmriiiz3abn65"; depends=[AmesHousing babynames dplyr forcats fueleconomy gapminder ggplot2 Lahman nasaweather nycflights13 palmerpenguins pixarfilms rlang tibble tidyr yaml]; }; dae = derive2 { name="dae"; version="3.2.15"; sha256="1qi90gr87imhc01iadghjkifni6j5pbcsi2z55hylqfbpwffcmnl"; depends=[ggplot2 plyr]; }; - daewr = derive2 { name="daewr"; version="1.2-7"; sha256="138hmmrm3zcdb2rcilvrasndvsq38agp9bpikd3xbb7j4z1nrsl7"; depends=[FrF2 lattice stringi]; }; + daewr = derive2 { name="daewr"; version="1.2-10"; sha256="0hckqjn12lkyjkbbql8l0pay5c430vhf0hp7hycp3v59i1aaz8bf"; depends=[lattice stringi]; }; dafishr = derive2 { name="dafishr"; version="1.0.0"; sha256="1n6b1r1awwxvdhn4znwp1p4jp3gvrjz017darjagx4cix0iisw1p"; depends=[dplyr fst ggplot2 lubridate magrittr mixtools readr readxl rlang sf stringr tibble tidyr tidyselect vroom]; }; dafs = derive2 { name="dafs"; version="1.0-38"; sha256="0ljhpw2f4hbkqh6c6gwqwwdsa4kp5qvyphig5zcn6qrb9ryf3wh1"; depends=[s20x]; }; dagHMM = derive2 { name="dagHMM"; version="0.1.0"; sha256="1dw4clv2x71km1sqz1mydscwyj6y9yqx06v3rkmdz13qqcacfmhi"; depends=[bnclassify bnlearn future gtools matrixStats PRROC]; }; @@ -8033,7 +8135,6 @@ in with self; { dagwood = derive2 { name="dagwood"; version="0.1.4"; sha256="1lp6swfmfzv28cfybmvj7czkfljd0sldv2qqi83q0fwcb7kxgdfz"; depends=[dagitty]; }; dail = derive2 { name="dail"; version="1.5.2"; sha256="0a82ch0l7ci9vjrwyy38qhw8zrp9d4h2bmk963llm9aqf4j7lkhf"; depends=[deflateBR dplyr janitor lubridate magrittr RCurl readr stopwords stringr tidytext]; }; daiquiri = derive2 { name="daiquiri"; version="1.0.3"; sha256="1fgblq35fm73d7ck9mqdyv1sza371fdky9d97lkmn05gdnqr1xj7"; depends=[cowplot data_table ggplot2 reactable readr rmarkdown scales]; }; - dalmatian = derive2 { name="dalmatian"; version="1.0.0"; sha256="0hpyg8sl5v87l1hxax9sj863hy9njdyp7hnsaw3cida365p0dswa"; depends=[coda dglm dplyr ggmcmc rlang tidyr]; }; dam = derive2 { name="dam"; version="0.0.1"; sha256="1b0fi3l8jxgpr9fwvi03giq7wm39msbh0c82ffgkh54a3bbf5blc"; depends=[]; }; dampack = derive2 { name="dampack"; version="1.0.1"; sha256="0mh3x0xgcipbd9341x3sfapysrd9m8aaakc1f53vwjj31c8vayqc"; depends=[dplyr ellipse ggplot2 ggrepel mgcv reshape2 scales stringr triangle truncnorm]; }; damr = derive2 { name="damr"; version="0.3.7"; sha256="12vr630m2az8xb8wndk8cyh7r8mwg3lvr7i3fcgqqxcq9rsgqm4r"; depends=[behavr data_table readr]; }; @@ -8055,7 +8156,7 @@ in with self; { dat = derive2 { name="dat"; version="0.5.0"; sha256="1d3q4bang6pm06rfzh6h947xy3wwqn3l6ri0h4hzklg5pzwpsajd"; depends=[aoos data_table Formula magrittr progress]; }; data_table = derive2 { name="data.table"; version="1.14.8"; sha256="1z9rf5anjvg3bmbbajb12nf65jsxdw35ad9piysrp76zcx9wxchl"; depends=[]; }; data_tree = derive2 { name="data.tree"; version="1.0.0"; sha256="0pizmx2312zsym4m42b97q2184bg3hibvbdrblcga05xln84qrs0"; depends=[R6 stringi]; }; - data_validator = derive2 { name="data.validator"; version="0.1.6"; sha256="1qzgwi9agsli96whzsyx7qxqzc5sixpqrd7z6fh4yrcv1i3li8yr"; depends=[assertr dplyr htmltools htmlwidgets knitr purrr R6 rlang rmarkdown shiny shiny_semantic tibble tidyr]; }; + data_validator = derive2 { name="data.validator"; version="0.2.0"; sha256="0v6blwkaxb87n2zdvfwa9fjil4mablch9gsdxa6sbsryx5s373yw"; depends=[assertr dplyr htmltools htmlwidgets knitr purrr R6 rlang rmarkdown shiny_semantic tibble tidyr]; }; data360r = derive2 { name="data360r"; version="1.0.9"; sha256="15934ixmzw3iyqazhlz6s5cimmasf062fc8al0wdyij1f4cjcgny"; depends=[data_table jsonlite reshape2]; }; dataCompareR = derive2 { name="dataCompareR"; version="0.1.4"; sha256="1rapnlbi43z4sx4rq3fp8kpqhdj4g02fi3xglldbdp0c59f9vacg"; depends=[dplyr knitr markdown stringi]; }; dataMaid = derive2 { name="dataMaid"; version="1.4.1"; sha256="06jywq3llwafjnpklqimra456crdi752zxci6z1w0v7p8blf4vjw"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; @@ -8075,7 +8176,7 @@ in with self; { datagovsgR = derive2 { name="datagovsgR"; version="1.0.0"; sha256="1vi3pql1k563ggvqr0d673z2aspvqi1w384lslinnsq85cwcfcly"; depends=[data_table dplyr httr purrr stringr]; }; datamods = derive2 { name="datamods"; version="1.4.0"; sha256="04qgfbmnf6rcfca5dmvjcfi6mnn4xmqpivhdblr7gv4qab1javqv"; depends=[data_table htmltools htmlwidgets phosphoricons reactable readxl rio rlang shiny shinybusy shinyWidgets tibble writexl]; }; datana = derive2 { name="datana"; version="1.0.2"; sha256="00a6r4af96v4wqbqk28hr8k75wqy24z5hann1rkglifw2vj1q6vn"; depends=[ggplot2]; }; - datanugget = derive2 { name="datanugget"; version="1.0.0"; sha256="1ki4kgz6y9a313f07jml39pdxhadgs287rkpnlwvcw6kgj5qxala"; depends=[doSNOW foreach]; }; + datanugget = derive2 { name="datanugget"; version="1.2.1"; sha256="1zvhbkpc1akzdfaz7jzgfmb287s88b8a5icgqkaq5zvlik6drw0q"; depends=[doSNOW foreach]; }; dataonderivatives = derive2 { name="dataonderivatives"; version="0.4.0"; sha256="0bp1ynarz70c2clsz60dqfd4vmgm3251jv6821db5n7fffdrr7qa"; depends=[httr2 readr tibble vetr]; }; dataone = derive2 { name="dataone"; version="2.2.2"; sha256="0509dmvf3kgk15cjbz3m9fzanbdpa5r0rz921m776a4bsjsilv4i"; depends=[base64enc datapack httr jsonlite parsedate plyr stringi stringr uuid XML]; }; datapack = derive2 { name="datapack"; version="1.4.1"; sha256="14vlcgk5sckzkc15cjvrbs113y65rqlwm1az7nsvnsqfx4x76jb1"; depends=[digest fs redland uuid XML zip]; }; @@ -8090,20 +8191,21 @@ in with self; { datasauRus = derive2 { name="datasauRus"; version="0.1.6"; sha256="0vgylf3bab0xcfg08xwvfq9yhxy6w0fxi7wp4kkxfyjb0pw15qxk"; depends=[]; }; dataseries = derive2 { name="dataseries"; version="0.2.0"; sha256="11wc2p5m8qbdmkpbd21lpwl28a1dpab88c3gqyrhsn0298lpnip4"; depends=[]; }; dataset = derive2 { name="dataset"; version="0.2.1"; sha256="1p7f27q3z810kfgcpcz934s3x8g2dl9dhg0y3sbr4z31kdmcaf8q"; depends=[assertthat ISOcodes]; }; - datasets_load = derive2 { name="datasets.load"; version="2.1.0"; sha256="1j6agly8icyn4kj88c69qzc1gyvjzhfg9ipax48qcm2m0wxzkk7n"; depends=[DT miniUI shiny]; }; + datasets_load = derive2 { name="datasets.load"; version="2.2.0"; sha256="187a1z0ljws5fvk91ap94cxm0yw6l47v0f4nhbq71jrk285zm1qr"; depends=[DT miniUI shiny]; }; datasetsICR = derive2 { name="datasetsICR"; version="1.0"; sha256="1iw8am7y6r6j21rp6r6iw1ri4c2yrgza7aw3ams4xbx6mcz3746y"; depends=[]; }; dataspice = derive2 { name="dataspice"; version="1.1.0"; sha256="1pnmb7kdx9wdvi2873rw1a7hc7spsvx4lfvfhfcqwgll46j0f1wm"; depends=[dplyr EML fs ggplot2 jsonlite magrittr purrr readr rhandsontable shiny stringr tibble tidyr whisker]; }; datastepr = derive2 { name="datastepr"; version="0.0.2"; sha256="039yggdj8jdici7hwmkjwgix45lvwjl7rw5h2rfzsm9xaq6vw1z2"; depends=[dplyr lazyeval magrittr R6 tibble]; }; - datastructures = derive2 { name="datastructures"; version="0.2.9"; sha256="0prw24iy1af02g1nzw588dv085bdnl6pzvizpxspmwzj6vrfbaav"; depends=[BH purrr Rcpp]; }; + dataverifyr = derive2 { name="dataverifyr"; version="0.1.5"; sha256="14jp4pzgj022b888df1s0p44v90ghr19bsdsa9hx3dx0i7ls8lzs"; depends=[yaml]; }; dataverse = derive2 { name="dataverse"; version="0.3.13"; sha256="1fzbllznvq5mls3hm1pirlkgjlsiwvdkkcqci2jymh376l2gx35g"; depends=[checkmate httr jsonlite readr xml2]; }; dataversionr = derive2 { name="dataversionr"; version="0.9.0"; sha256="013c45fbak32bcda9zj8dk0jw57xpbriymks4n38d9nliflqr6z5"; depends=[arrow diffdfs dplyr lubridate magrittr purrr rlang tidyr]; }; datawizard = derive2 { name="datawizard"; version="0.7.1"; sha256="1jn22qv0s6nbfih3n249v9ynl7s4m102wyw1rnkmxjwryz8vr73p"; depends=[insight]; }; datazoom_amazonia = derive2 { name="datazoom.amazonia"; version="1.0.0"; sha256="07b7wg71lvilb0hcimr4shaskl1rixn75nvc3mfxi85hbdkk56xn"; depends=[data_table dplyr Hmisc janitor lubridate magrittr purrr Rcpp readr readxl sf sidrar stringi stringr tibble tidyr XML]; }; date = derive2 { name="date"; version="1.2-42"; sha256="0x6b9dk7llvmcf2bzgdk8g1a28as0l1xxx2xn2fwyw801ab3z4as"; depends=[]; }; datefixR = derive2 { name="datefixR"; version="1.4.1"; sha256="1f6n8fxbcq3n1y4w10p53sarjx2i8x4y1hjkcxc8ynb0zxlp7d2v"; depends=[lifecycle Rcpp rlang stringr]; }; - daterangepicker = derive2 { name="daterangepicker"; version="0.1.0"; sha256="1605ch84ad3nmmad0yy3id0izv0nz536lxwib6rkdkjik5761gqk"; depends=[htmltools jsonify shiny]; }; + datelife = derive2 { name="datelife"; version="0.6.7"; sha256="0jnx26lz6gvrgrlbdm7lf8lz08ddkw9cmk2587p1xv4lliw487f8"; depends=[abind ape BiocManager bold cluster compare curl data_table geiger httr ips knitcitations paleotree phangorn phylobase phylocomr phytools plyr rotl stringr taxize treebase]; }; + daterangepicker = derive2 { name="daterangepicker"; version="0.2.0"; sha256="03y8r1n31ipapfbbg12myrnqd961ra3fb6r4mjxqfkppxcj9c6mi"; depends=[htmltools jsonify shiny]; }; datetime = derive2 { name="datetime"; version="0.1.4"; sha256="0nn1yxknsn3crmwbkws5kvfjhd65dw0fkfbg67gba0dyaqp1jg37"; depends=[]; }; - datetimeoffset = derive2 { name="datetimeoffset"; version="0.2.1"; sha256="0jjiihx7fwg36v6n2mv0ly54f9jz5j7q7phla3axnqz68slb9dsf"; depends=[clock purrr vctrs]; }; + datetimeoffset = derive2 { name="datetimeoffset"; version="0.3.1"; sha256="11xxxfv3g8jf16cwpxjycrymx9baf8gkpd98x69djhbnrn3si0vn"; depends=[clock purrr vctrs]; }; datetimeutils = derive2 { name="datetimeutils"; version="0.6-1"; sha256="0phk1d9vs5whkf0azwz5mn1q4j1crz0yq1fpln9si66bxzn0dzi6"; depends=[]; }; datetoiso = derive2 { name="datetoiso"; version="0.1.0"; sha256="1pxk229gfl2zj1arlgyyll6h4bq8d90d2a2a09r216f5vdxafj0j"; depends=[lubridate stringr]; }; dateutils = derive2 { name="dateutils"; version="0.1.5"; sha256="03xch5wcvv15fy9x70smrki6374lddhf0sfp0inymdsq4g8wp4bc"; depends=[data_table Rcpp RcppArmadillo seasonal]; }; @@ -8113,7 +8215,6 @@ in with self; { datr = derive2 { name="datr"; version="0.1.0"; sha256="0sqwhn6zdaq8i45ry207mpbda1djjaxp9mcn13hi5wkry6z0bmlr"; depends=[devtools]; }; datrProfile = derive2 { name="datrProfile"; version="0.1.0"; sha256="1bhyk3xjgwf92i765z3bkdnzkxg8fshriz9r6m371q1c75xysfil"; depends=[dplyr odbc RSQLite]; }; dauphin = derive2 { name="dauphin"; version="0.3.0"; sha256="04r48wld84by8lwqi9pwdypval814wfshjblmm30v5igwl1xcgzc"; depends=[]; }; - dave = derive2 { name="dave"; version="2.0"; sha256="1rraphpp34czyjj15xzvj1ihlnqzcppqls9n2g85n49zv0n1ngn8"; depends=[cluster labdsv nnet tree vegan]; }; dawai = derive2 { name="dawai"; version="1.2.5"; sha256="0g52bm66jnvga4sf5n5m18k5jx56vqpn886jk0k6lydj78nkq88q"; depends=[boot ibdreg mvtnorm]; }; daySupply = derive2 { name="daySupply"; version="0.1.0"; sha256="1317g60cmqlw1wy7n7x5ifh544lzsysif6192s2k16jmgzj6cz2s"; depends=[dplyr lme4 magrittr rlang]; }; daymetr = derive2 { name="daymetr"; version="1.7"; sha256="0rambqnvw3wv8nb5ldzx8wbsjv6vwqhp144lw052i7y9i9jdyn93"; depends=[httr ncdf4 sf terra tibble tidyr]; }; @@ -8128,7 +8229,7 @@ in with self; { dbhydroR = derive2 { name="dbhydroR"; version="0.2-8"; sha256="1gd3n6i47qbxp6d3y5sjvgmxc5p3afy2lhkg9020ws1xm0bk9q7d"; depends=[httr reshape2 XML]; }; dblcens = derive2 { name="dblcens"; version="1.1.9"; sha256="1m5v8hx9n5rh5f230m8f0iss6s29qjbg4wp1mjihckw8df5qf1aj"; depends=[]; }; dblr = derive2 { name="dblr"; version="0.1.0"; sha256="0wzmhmp706mw0pkh81nsb7qzclwyhm6f2mjvpvz043ng5xrxwvvw"; depends=[CatEncoders data_table Metrics xgboost]; }; - dbmss = derive2 { name="dbmss"; version="2.8-0"; sha256="145p4vv375nwglb7k6c97cfj9325rhv28nxy8i2b3486bjnkyvc7"; depends=[automap cubature dplyr ggplot2 Rcpp RcppParallel reshape2 rlang sp spatstat_explore spatstat_geom spatstat_random spatstat_utils tibble tidyr tidyselect]; }; + dbmss = derive2 { name="dbmss"; version="2.8-2"; sha256="1fz1hkzsqf8myii502hniw4pihj4nrj7rck3v7f7vhqm10w6zz0v"; depends=[automap cubature dplyr ggplot2 Rcpp RcppParallel reshape2 rlang sp spatstat_explore spatstat_geom spatstat_random spatstat_utils tibble tidyr tidyselect]; }; dbnR = derive2 { name="dbnR"; version="0.7.8"; sha256="10lw8ax33l0q52pm07fi66fhm06n3yg48plgvz5cg14l98v7g7s5"; depends=[bnlearn data_table magrittr MASS R6 Rcpp]; }; dbnlearn = derive2 { name="dbnlearn"; version="0.1.0"; sha256="0kmyiad7v96mnfi24d2pn3dqmk3g82sx348m1vhhqwijfnj53brb"; depends=[bnlearn bnviewer ggplot2]; }; dbparser = derive2 { name="dbparser"; version="2.0.1"; sha256="0n8hbra1mjrlbzpxlpalx5w84w6xq38v3v3x5rsgkkyzmnk4r5jf"; depends=[dplyr progress purrr tibble XML]; }; @@ -8147,28 +8248,29 @@ in with self; { dclust = derive2 { name="dclust"; version="0.1.0"; sha256="1icfx52v3g7kkkc11pw0xlrc8dlx5q3n2zbrd3fccmw17jzxqbg7"; depends=[openssl phylogram]; }; dcm2 = derive2 { name="dcm2"; version="1.0.2"; sha256="1dxymql66sy0nfxqfh106cvz5r93ajpjr1w8amn03w0ciz4v5nqs"; depends=[dplyr glue magrittr modelr purrr Rcpp RcppArmadillo rlang stringr tibble tidyr]; }; dcmle = derive2 { name="dcmle"; version="0.3-1"; sha256="1d6zk9413h30wcw8q1gnjzk67vshmjcpnh8zjxrsh1h69i1z6rpy"; depends=[coda dclone lattice]; }; - dcmodify = derive2 { name="dcmodify"; version="0.1.9"; sha256="0p4xw74rls7i3fymsjcrazkrp22cfrfffz63l7wyb842z902smls"; depends=[settings validate yaml]; }; + dcmodify = derive2 { name="dcmodify"; version="0.8.0"; sha256="1r4mfkf766hsr3qd60mmxy3841r8jc4d6wlb12cak4aanqisq7aj"; depends=[lumberjack settings validate yaml]; }; dcortools = derive2 { name="dcortools"; version="0.1.6"; sha256="1qcblwcv2rwrl502hiv0l0r137sa4k0kx892k2w1chm40y5vri3b"; depends=[ggplot2 Hmisc pheatmap Rcpp RcppArmadillo RcppEigen Rdpack Rfast]; }; dcov = derive2 { name="dcov"; version="0.1.1"; sha256="0c3a5dzpizsxlsh723pcd0d7n0mgfc9y35vrfhmskp3c1x639mh3"; depends=[Rcpp RcppArmadillo]; }; dcurver = derive2 { name="dcurver"; version="0.9.2"; sha256="1v4h480lff1cyjjwb80dksiffh0y4b3s07lq2l2r21rn1l4mav6c"; depends=[Rcpp RcppArmadillo]; }; dcurves = derive2 { name="dcurves"; version="0.4.0"; sha256="1hlpii7ba19g4gg3cj071hy3mhp80rya079118xmrcxzhn68102c"; depends=[broom dplyr ggplot2 glue purrr rlang scales survival tibble]; }; ddalpha = derive2 { name="ddalpha"; version="1.3.13"; sha256="1bjfgb3lbzhjb5wx9hzp90jppq7vnj59bmd2n9ymi8sh1570m9p4"; depends=[BH class geometry MASS Rcpp robustbase sfsmisc]; }; ddc = derive2 { name="ddc"; version="1.0.1"; sha256="1l5ljfhhyqcj4s4247vndqrz6qfcygi014l59d4gpxym810iqr26"; depends=[dtw dtwclust magrittr]; }; - dde = derive2 { name="dde"; version="1.0.1"; sha256="0qgnxb27a2wnrbfk5v22i985mqhjp4hp05vl1ccsapbxkpf0gqcv"; depends=[ring]; }; + dde = derive2 { name="dde"; version="1.0.4"; sha256="1qwa9vmsjq9d4z08ja687058bpx7zg16k0pwk2knkjya3clz774k"; depends=[ring]; }; ddi = derive2 { name="ddi"; version="0.1.0"; sha256="0pnkylz7l6brx6i73wys637w811psxhnr39lcmkag41s6jcgabd5"; depends=[]; }; ddiv = derive2 { name="ddiv"; version="0.1.1"; sha256="0xsn74z78znrm3rnnvdphp89sb0lik564ha3wv6n3ldrfh1van8y"; depends=[MASS qpdf segmented]; }; ddp = derive2 { name="ddp"; version="0.0.3"; sha256="03gszqzh73zq04hqa2zgxn4fkiyr1fbhx3byxsdfzmmji46f8qip"; depends=[]; }; ddpca = derive2 { name="ddpca"; version="1.1"; sha256="1qsanid7sr2nc9pwzyz4cbjc1vg0rj255d3rnh1rb22agrgj2bc1"; depends=[MASS Matrix quantreg RSpectra]; }; ddpcr = derive2 { name="ddpcr"; version="1.15.1"; sha256="1i6nl2c5k7bg9izz4a4cdgm46a88h08y0dpzbxr82bwqfc7l3kcx"; depends=[dplyr DT ggplot2 lazyeval magrittr mixtools plyr readr shiny shinydisconnect shinyjs tibble]; }; ddplot = derive2 { name="ddplot"; version="0.0.1"; sha256="03zcnc6is4qdpz3krhhz820j0an6dr7562bnmzj787xf5parwq6r"; depends=[r2d3]; }; + ddsPLS = derive2 { name="ddsPLS"; version="1.2.0"; sha256="0b35znfd56lcswygq4h5k5zlsdazpva3pq4anvr96wljf4gwnffn"; depends=[doParallel foreach Rcpp RcppEigen shiny]; }; ddst = derive2 { name="ddst"; version="1.4"; sha256="1y0immm337adkd2bjx8c5pf02w9wysv3gj26f4qf0jiba0f2wk8n"; depends=[evd orthopolynom]; }; deBInfer = derive2 { name="deBInfer"; version="0.4.4"; sha256="1l4wim82n5q51c1f7193d3i22qrn9kfcsddyrn8izhlwsjb9q3kp"; depends=[coda deSolve MASS mvtnorm PBSddesolve plyr RColorBrewer truncdist]; }; deBif = derive2 { name="deBif"; version="0.1.7"; sha256="1jz5kxhjbsfd2mvy6dhs7h3zx7gp6j2bg2sf9q08wx61q3b6ksq6"; depends=[deSolve rootSolve rstudioapi shiny shinydashboard shinydashboardPlus shinyjs]; }; - deFit = derive2 { name="deFit"; version="0.1.2"; sha256="1r7s8hh0wia713a02dgzbgpsxmgyq8vqwwy610yipd8qn8nflklw"; depends=[deSolve ggplot2 R6]; }; + deFit = derive2 { name="deFit"; version="0.2.0"; sha256="0z0pf0rhmnpn49rbidlbpy3krd797rsvsh8v4psqf44sjsywgd6r"; depends=[deSolve ggplot2 R6]; }; deSolve = derive2 { name="deSolve"; version="1.35"; sha256="126l473wvmy7zsm34alskwigbf85dn657hsnzy24yx8kfx4pzwcn"; depends=[]; }; deTS = derive2 { name="deTS"; version="1.0"; sha256="08yq7vfcd8fv8qw2w0f1rnj3rzys9kslmkqspmiz6prmzqvj1zf1"; depends=[pheatmap RColorBrewer]; }; deTestSet = derive2 { name="deTestSet"; version="1.1.7.3"; sha256="0v59cczhwjrk7qgngmiyc7jvx11h808w4s3ww6l83n1ylx81fgll"; depends=[deSolve]; }; - deaR = derive2 { name="deaR"; version="1.4"; sha256="15qwmrwpamm6flyhqhvmn3h06y7hpv6kxdf494f2x39sn7sw08pm"; depends=[dplyr ggplot2 gridExtra igraph lpSolve plotly tidyr writexl]; }; + deaR = derive2 { name="deaR"; version="1.4.1"; sha256="0rc12pr4br8kca90xcy5f8w1fyjzn6s7kyc3q3m3caxq8dlidn5v"; depends=[dplyr ggplot2 gridExtra igraph lpSolve plotly tidyr writexl]; }; deadband = derive2 { name="deadband"; version="0.1.0"; sha256="02pq3d0l0wy8bdlyfir3zf46j1ascx4qajyq5cf28yl62q6ngq5d"; depends=[TTR]; }; deal = derive2 { name="deal"; version="1.2-42"; sha256="0d516gvhqw6nfv9ijda9j04nlcjgdnnlgcf5774n8fgwjhm4azx1"; depends=[]; }; debar = derive2 { name="debar"; version="0.1.0"; sha256="03xlhnbvmkg93f6zl3x22rfwvs17fscvl8irmnm19pifk4bvbpyd"; depends=[ape aphid seqinr]; }; @@ -8179,7 +8281,7 @@ in with self; { decision = derive2 { name="decision"; version="0.1.0"; sha256="13d0yyg5zp7n3r92l0l1dsffxfph6vacrlzga9rz41l5pja72z6g"; depends=[]; }; decisionSupport = derive2 { name="decisionSupport"; version="1.111"; sha256="0san25jhn025lbmjnvqpdkid9rpsr94p8511k4c1iia7ljczbgmp"; depends=[assertthat chillR dplyr fANCOVA ggplot2 ggstance magrittr msm mvtnorm nleqslv patchwork rriskDistributions stringr tidyr tidyselect]; }; deckgl = derive2 { name="deckgl"; version="0.3.0"; sha256="0cjvmdiqknrq8mlqxmhkhcib40asdyl2bpllx8v1jz3h1d62zs04"; depends=[base64enc htmltools htmlwidgets jsonlite magrittr readr tibble yaml]; }; - declared = derive2 { name="declared"; version="0.20"; sha256="05c46vl46b3ajx5dm141z240faky8xy6ql107v5fiq4xixl9crac"; depends=[]; }; + declared = derive2 { name="declared"; version="0.21"; sha256="02b6jyx19fvqmvb300afcihy9sal0clnfnc7jmkkvh0hbx556i0i"; depends=[]; }; decode = derive2 { name="decode"; version="1.2"; sha256="1qp0765gl3pgfdzjwj7icf3zminxxmrlw6gx3vj51y6c2y5ws4as"; depends=[]; }; decoder = derive2 { name="decoder"; version="1.2.2"; sha256="1jxgd32bn36ldal26wivhdxgjy247l7r4ickacr1p8rrwxvhpk18"; depends=[]; }; decomposedPSF = derive2 { name="decomposedPSF"; version="0.2"; sha256="12sb4zzvc29hvhlay97g84pn4saqyp16wckjrdgg4qqpc0rzrfz5"; depends=[forecast PSF Rlibeemd tseries]; }; @@ -8208,15 +8310,16 @@ in with self; { default = derive2 { name="default"; version="1.0.0"; sha256="0hzxgp9la9kll5cw3m4gd02rii571xsn1v53kz407k7k6rfg5mda"; depends=[]; }; defineR = derive2 { name="defineR"; version="0.0.4"; sha256="1wm6ynicwk2dlx8m0k45kc1pa8i3z8w78xk3v40szy2ys5j80m7v"; depends=[common glue libr openxlsx readxl reporter xml2 xslt]; }; deflateBR = derive2 { name="deflateBR"; version="1.1.2"; sha256="17zsy10k12gmffbk7nagi60xj347q0bf7wr885fiylqz2xiy9fl9"; depends=[dplyr httr lubridate]; }; + deflist = derive2 { name="deflist"; version="0.2.0"; sha256="0m19yz3x4gn8zad7lgf343r41bqjvd5a279ykll8cw04y74c43lm"; depends=[assertthat memoise purrr rlang]; }; deforestable = derive2 { name="deforestable"; version="3.1.1"; sha256="0p8psbsjxmc456flypdw2kh8kjsy2hw13nfcdilg527iy1dpif6i"; depends=[jpeg plyr Rcpp RcppArmadillo StableEstim terra]; }; deformula = derive2 { name="deformula"; version="0.1.2"; sha256="18jrznpw2vqb658wv88yq4x7z44ilkjg0xb5v2lww87wxbv4m0gj"; depends=[cpp11 Rcpp]; }; degday = derive2 { name="degday"; version="0.4.0"; sha256="07a5zl56hh5vl94alsd9kvjdj5vy0vgx8dpyvr0qdiwj9m8a830y"; depends=[crayon magrittr zoo]; }; degreenet = derive2 { name="degreenet"; version="1.3-3"; sha256="07mkj2sdp09624mmb1x3djjypnrzn43qn2j4m93blli51j6zchm3"; depends=[igraph network]; }; degross = derive2 { name="degross"; version="0.9.0"; sha256="17n389a0k4jswgs908bcdhi410wpd1ljxh5izv35cldfq7dhjb3k"; depends=[cubicBsplines]; }; dejaVu = derive2 { name="dejaVu"; version="0.3.0"; sha256="0l30m707zrp05d7hywlx443n02mflxqsampmcblj3fvcbyywc1fd"; depends=[MASS]; }; - delaunay = derive2 { name="delaunay"; version="1.1.1"; sha256="088a05hv7nr15bw3c3093ymamls2wlhg6bjv6px0ifvpn88a2rly"; depends=[BH gplots randomcoloR Rcpp RcppCGAL RcppEigen rgl Rvcg]; }; + delaunay = derive2 { name="delaunay"; version="2.0.0"; sha256="0rnbi17fsgh1k7sr2blnf7sgppxv1fqm0l85z16bryx5z7ab602p"; depends=[BH gplots randomcoloR Rcpp RcppCGAL RcppEigen rgl Rvcg scales sets]; }; delayed = derive2 { name="delayed"; version="0.4.0"; sha256="0a00jwd4c69ba31xddl0gxjza6ydywlrgx21rm3bn8p247q5i37f"; depends=[BBmisc data_table future igraph progress R_oo R_utils R6 rlang rstackdeque uuid visNetwork]; }; - deldir = derive2 { name="deldir"; version="1.0-6"; sha256="1igq0l2knsbhizncgydcsidgkvvlwwlkrifbcdyhnzk0bhrdixkd"; depends=[]; }; + deldir = derive2 { name="deldir"; version="1.0-9"; sha256="11q6cz410q8sv0w81fk1px3vx7xmyda5cbsv3m21xr577bn28yhj"; depends=[]; }; deltaPlotR = derive2 { name="deltaPlotR"; version="1.6"; sha256="15vjg3viyfrxvvh34p8i7j8p0vpg5628g8198adhi0i2ri3ygz9a"; depends=[MASS]; }; deltaccd = derive2 { name="deltaccd"; version="1.0.2"; sha256="1iqyycjfmclr9y8gfj61naxwafjgmfwahyrc110qxzb239b501rw"; depends=[data_table doRNG foreach ggplot2 rlang scales statmod]; }; dematel = derive2 { name="dematel"; version="0.1.0"; sha256="1m84sd46cg7188wnjx09g88xvxdp7i0mdxnynwlqkgcmnwx4bdjw"; depends=[ggplot2 knitr]; }; @@ -8235,6 +8338,7 @@ in with self; { dendroextras = derive2 { name="dendroextras"; version="0.2.3"; sha256="0hb7crbgsnbcwvbk05iz5ik45n7zgysmwjj6xc46131yd8l0i1qx"; depends=[]; }; dendrometry = derive2 { name="dendrometry"; version="0.0.2"; sha256="0zxavg34mmxkl5i5mi3x0g1m8pd4f9vc70906iazmmvimvvhp22c"; depends=[]; }; dendsort = derive2 { name="dendsort"; version="0.3.4"; sha256="0rs7y471wrhkgibxdmfh5xhp3pa004rrlm2w08b6qli5gq4im5d2"; depends=[]; }; + denguedatahub = derive2 { name="denguedatahub"; version="1.0.4"; sha256="0h7w7qnvh7cq9v6m9axmip0nkbas3sdhccq5h5n4yny5r1jilbq4"; depends=[dplyr rlang]; }; denoiSeq = derive2 { name="denoiSeq"; version="0.1.1"; sha256="18w69gxbnazg5k8bzi76slcqxnbfmrndp548zazz8bpxz3jns699"; depends=[]; }; denoiseR = derive2 { name="denoiseR"; version="1.0.2"; sha256="1q5kxiwfkrf2k0gpidzhl4hyzyjcm33rwlw4dan9nkx1181naw9l"; depends=[FactoMineR irlba Matrix]; }; denovolyzeR = derive2 { name="denovolyzeR"; version="0.2.0"; sha256="03ya5clzqp12lfhw073ri0pwgxn53a6pvnais317a8bv1yinxspb"; depends=[dplyr reshape2]; }; @@ -8248,13 +8352,12 @@ in with self; { depcache = derive2 { name="depcache"; version="0.1-2"; sha256="1gmxf6fffjgv7xzjckqmb7b79dn7km2hbv8z6s2scd7gic8iwg0i"; depends=[codetools]; }; depcoeff = derive2 { name="depcoeff"; version="0.0.1"; sha256="08vs0yzfvd4ahcs5rz4i4spp8l6fg45bm0m22gn5rzxc4759mzac"; depends=[copula Rcpp]; }; depend_truncation = derive2 { name="depend.truncation"; version="3.0"; sha256="1jym52qxx8v4kbq2578d03q2593q96jccr85if47djikw0aaxmcr"; depends=[mvtnorm]; }; - depigner = derive2 { name="depigner"; version="0.9.0"; sha256="04pghgdr0yl8np01abyjqkrzka19sr4wa018s5i4p9p7xcrv8ngk"; depends=[desc dplyr fs ggplot2 Hmisc magrittr progress purrr readr rlang rms rprojroot stringr telegram_bot tibble tidyr usethis]; }; + depigner = derive2 { name="depigner"; version="0.9.1"; sha256="0vzrdw4rhrwiyc4g4ancfd43h56b72lkvabqdwdsg54hjm35c1ky"; depends=[desc dplyr fs ggplot2 Hmisc magrittr progress purrr readr rlang rms rprojroot stringr telegram_bot tibble tidyr usethis]; }; depmix = derive2 { name="depmix"; version="0.9.16"; sha256="1vi9fi131ni34z9p3x6pdp6y9v0y0nx71zg1q8898frhqwbwhd9c"; depends=[MASS]; }; depmixS4 = derive2 { name="depmixS4"; version="1.5-0"; sha256="1pacvhw5m4fsk3ysbal50fdqbvlaz8ywyqp6bn1wh42wipqbb2i8"; depends=[MASS nlme nnet Rsolnp]; }; deps = derive2 { name="deps"; version="0.1.2"; sha256="151dnwl98ciz0r36h0yaqa4gs1kkizbb72y92dian1sz9ilp7s0i"; depends=[jsonlite remotes renv]; }; depth_plot = derive2 { name="depth.plot"; version="0.1"; sha256="0zjg9iyqmcnkvwc9w2j7lmk3k9nsg6n8m6vq5x44d1bp4g2gr6jv"; depends=[mvtnorm]; }; depthTools = derive2 { name="depthTools"; version="0.7"; sha256="00pn4ccsg1hjv83xqk4g0g24cz2a87shlbg8kd2dri4dcagzifg0"; depends=[]; }; - dequer = derive2 { name="dequer"; version="2.0-2"; sha256="0bc1gf5kbp36zxds70l40r4bsa4f1ih11cy7dkxc6yym6hp79789"; depends=[]; }; derivmkts = derive2 { name="derivmkts"; version="0.2.5"; sha256="0zjdpjd7qa7zg0dyyq1y4rskk8bi2jpsxzrdg43lnsyrxg99q1n6"; depends=[mnormt]; }; desc = derive2 { name="desc"; version="1.4.2"; sha256="0z1259ghccmrjylydra4bpryqasirsky7bc4gsx0k327pqacz2km"; depends=[cli R6 rprojroot]; }; descomponer = derive2 { name="descomponer"; version="1.6"; sha256="1yznb6j850gap1bacvx5dkh4030x38041ll61z6an6h7j71yyc5p"; depends=[]; }; @@ -8269,9 +8372,10 @@ in with self; { desiR = derive2 { name="desiR"; version="1.2.2"; sha256="149wgg5mbq95wizpc24mwb8qfxjdia4qkz66bnzjgiiyfh6r46wp"; depends=[]; }; designer = derive2 { name="designer"; version="0.2.0"; sha256="0k14x0gn217lvd6vr4aszy2ngm3w7b45bas3g6vmik2q7h0klvqx"; depends=[bs4Dash bslib cicerone config fontawesome golem htmltools jsonlite shinipsum shiny shinyscreenshot]; }; designmatch = derive2 { name="designmatch"; version="0.4.1"; sha256="1qjyicjvlk2xp0c9p35y8ih7l6h0416nzqfsqb5psgr1p6i1vh7s"; depends=[lattice MASS Rglpk slam]; }; - designr = derive2 { name="designr"; version="0.1.12"; sha256="1sn5cnqpczzvxmcib4mcwys8y98vx3pxdxcpy2v6rvrhjsqrc207"; depends=[crossdes dplyr lme4 MASS tibble]; }; + designr = derive2 { name="designr"; version="0.1.13"; sha256="13rj2xxxxj35zl7q570c3i4p2wjpxf79dza0sg9bhbq3yal6j6r2"; depends=[crossdes dplyr lme4 MASS tibble]; }; designsize = derive2 { name="designsize"; version="0.1.0"; sha256="1c9b320vssw3s1ybyialg5s85k1vfllbw40qfgmvnsr3imc2inb2"; depends=[]; }; desirability = derive2 { name="desirability"; version="2.1"; sha256="094gxvp6a60lfcc0a0gk9rv1p6ajnzq9m58sy8cvhcj5337g4fmk"; depends=[]; }; + desirability2 = derive2 { name="desirability2"; version="0.0.1"; sha256="0x5v6mak68h6a03hccf8gksj3wmgcd3l84bplx1s4jr755wdm5ih"; depends=[glue purrr rlang tibble]; }; desla = derive2 { name="desla"; version="0.2.0"; sha256="1m094k06bmi1bzdwdd4yrrjynpw0n5fvbv2phfanx7q10dm51f6l"; depends=[parallelly Rcpp RcppArmadillo RcppProgress Rdpack]; }; desplot = derive2 { name="desplot"; version="1.10"; sha256="1994fqd9d1g314bj0qx7gcb6qmv38gl2brc2gwms3zy4r4b86f57"; depends=[ggplot2 lattice reshape2 rlang]; }; details = derive2 { name="details"; version="0.3.0"; sha256="0mygkmfmfp3a2hgql514zyh4rw3v8i4g4cls6rss0fplg4pskwc7"; depends=[clipr desc htmltools httr knitr magrittr png withr xml2]; }; @@ -8285,10 +8389,10 @@ in with self; { detrendeR = derive2 { name="detrendeR"; version="1.0.5"; sha256="1kx404z0xp22d1jhpn217l8wcn6p587by908a6465dfpkhc8vyyb"; depends=[dplR tkRplotR]; }; detrendr = derive2 { name="detrendr"; version="0.6.15"; sha256="00j35i45a55srvdlhv0b9vcrsp44fmdv49giqm03ha015pgmsbdd"; depends=[arrayhelpers autothresholdr checkmate doParallel dplyr filesstrings foreach ijtiff iterators magrittr plyr purrr Rcpp RcppParallel rlang stringr withr]; }; detzrcr = derive2 { name="detzrcr"; version="0.3.1"; sha256="0afi1ir8il5xmzkpmbc2m5mvmgzlqw8qdn04gbnwl74a03yaxxmj"; depends=[DT ggplot2 MASS shiny]; }; - devEMF = derive2 { name="devEMF"; version="4.3"; sha256="1rn88dkp9h0zk1rnk0crkk43lhl1xvb6jn3i53j98mqa6zrxjrl1"; depends=[]; }; + devEMF = derive2 { name="devEMF"; version="4.3-1"; sha256="0kn3jsl0zrl4ix016nbms7jsg8gx17q1asp640hzcva15y2q1f2x"; depends=[]; }; devFunc = derive2 { name="devFunc"; version="0.1"; sha256="0f2s5gssk9napmah7zcss1rnh7pzlq90gzwcnvyr9rrq6k118n8q"; depends=[plyr stringr]; }; devRate = derive2 { name="devRate"; version="0.2.3"; sha256="05jmxlbxqx8czaxy9lhanvcz6qjwp8r33a22njr52xhfk0d4yivk"; depends=[]; }; - devoid = derive2 { name="devoid"; version="0.1.1"; sha256="14cf75wih7401vmrfmswc9cihgmbyn90wg2vjkzv628mm5fgg01h"; depends=[]; }; + devoid = derive2 { name="devoid"; version="0.1.2"; sha256="1hdqww5al3wv3jncfj8zqwypv487hc4pdb1d4f1c3w68fp0b1zni"; depends=[]; }; devtools = derive2 { name="devtools"; version="2.4.5"; sha256="0jwh14clyj5flygpmifk01avs7mbnj2s1686pxzfrkcshfyhw5iq"; depends=[cli desc ellipsis fs lifecycle memoise miniUI pkgbuild pkgdown pkgload profvis rcmdcheck remotes rlang roxygen2 rversions sessioninfo testthat urlchecker usethis withr]; }; dexter = derive2 { name="dexter"; version="1.2.2"; sha256="1bvrxbg564y5wwndl92xhz628c7qpjz7vh44a0r0rc7lrc8h0hsx"; depends=[DBI dplyr MASS Rcpp RcppArmadillo rlang RSQLite tidyr]; }; dexterMST = derive2 { name="dexterMST"; version="0.9.3"; sha256="1c30v83lx6p90l8a9kia5p0361j3ymbabyb2r6dkkak8n8zwfydl"; depends=[crayon DBI dexter dplyr igraph Rcpp RcppArmadillo rlang RSQLite tidyr]; }; @@ -8309,6 +8413,7 @@ in with self; { dfped = derive2 { name="dfped"; version="1.1"; sha256="11ffsah14igba276m9d3cla0kgb3isizm5d7j1iqcd0wq23il7hq"; depends=[ggplot2 rstan]; }; dfphase1 = derive2 { name="dfphase1"; version="1.1.4"; sha256="1a219igrrkryf5m1zykfrgyf4gr2fivphbk5ps56cq2y3w5zb9k7"; depends=[lattice Rcpp robustbase]; }; dfpk = derive2 { name="dfpk"; version="3.5.1"; sha256="010rlxj66ar3y61fnm7ys3p6aimlr8ylqq4q4flzr9m88klz8701"; depends=[BH dfcrm ggplot2 PK Rcpp RcppEigen rstan StanHeaders]; }; + dfsaneacc = derive2 { name="dfsaneacc"; version="1.0.0"; sha256="0asynp7xv1b7yywdiycacskqdidcdq6z4n1b4xxx5yggx5qpqavv"; depends=[]; }; dfvad = derive2 { name="dfvad"; version="0.3.6"; sha256="1g232y0zmgpgx6phfsx67548dvqiwa4bc8q9cvpgmkdfaskczcfx"; depends=[]; }; dga = derive2 { name="dga"; version="2.0.1"; sha256="1q860hzxrbkpmnphdysx4wk1b46wjll8sw7xjsy1lxcaz9hwcnjk"; depends=[chron Rcpp RcppArmadillo]; }; dggridR = derive2 { name="dggridR"; version="3.0.0"; sha256="1915lc81yw6ns02fi37xjqd2zbdzhdsvqqb6c9w4b6i0665yb9ja"; depends=[dplyr Rcpp rlang sf sp]; }; @@ -8338,14 +8443,14 @@ in with self; { dictionaRy = derive2 { name="dictionaRy"; version="0.1.1"; sha256="0j25wn2ghy59y1v02493d4knab06wxrzz8m9g6zxlkqzw1dqgc4f"; depends=[jsonlite tibble]; }; dictionar6 = derive2 { name="dictionar6"; version="0.1.3"; sha256="1rg958py4pqghkid3830hla7vibvwsjhk75x55lxry5d8dp04m9f"; depends=[ooplah R6]; }; did = derive2 { name="did"; version="2.1.2"; sha256="07r4m326n2gmgmf5ym5y72xg1xin771172rcpk0xkz6v344lwf9j"; depends=[BMisc DRDID generics ggplot2 ggpubr Matrix pbapply tidyr]; }; - did2s = derive2 { name="did2s"; version="1.0.1"; sha256="07c3arwbgd72i74fwpw1wf7g8ql8pdwghbs8gcyk1bckcwwk4ldj"; depends=[boot broom data_table did didimputation fixest ggplot2 glue Matrix Rcpp RcppArmadillo rlang staggered stringr]; }; + did2s = derive2 { name="did2s"; version="1.0.2"; sha256="0iyz6z4w2im22rvbpabql2w1cncv0pnrh0hp7agf0pazcpzk2jh6"; depends=[boot broom data_table did didimputation fixest ggplot2 Matrix MatrixExtra rlang SparseM staggered]; }; didimputation = derive2 { name="didimputation"; version="0.3.0"; sha256="122z473jkf5jb66s2g7vdqi0q56v8chz2dpl61qkcgqhv4hbh1q3"; depends=[broom data_table dplyr fixest glue magrittr Matrix purrr Rcpp RcppArmadillo stringr tidyr]; }; didrooRFM = derive2 { name="didrooRFM"; version="1.0.0"; sha256="12clfnbm56jwldw0afb0nb0argnd97mx7369jiywhxy0p4xqibqq"; depends=[dplyr]; }; dief = derive2 { name="dief"; version="1.2"; sha256="1i4icdfqvw7imaj1fh392zmzfyz8aqlv9s5naqxm1pm0lqfxl6ca"; depends=[flux fmsb ggplot2 plyr]; }; - diemr = derive2 { name="diemr"; version="1.2"; sha256="0r11ifgnx9ygsl3c7xmcnwzv4gdnxrk81zwvjzj8g04fmjk6rg4b"; depends=[vcfR zoo]; }; + diemr = derive2 { name="diemr"; version="1.2.1"; sha256="1k491cwi0qrhp3gp1x0hcqjwy6hl0ypc1ldwcfpfh3d04mmfkl9w"; depends=[vcfR zoo]; }; dietr = derive2 { name="dietr"; version="1.1.4"; sha256="0l0pf55xhfzk7il7cvcasf6gi8nvcckygvryhfqldyq7zmr1pgyh"; depends=[rfishbase]; }; diezeit = derive2 { name="diezeit"; version="0.1-0"; sha256="0rq1k08byvqn99wpql7drnrcxlzcqrcxixh7bczbc8dv1hhsgk9i"; depends=[brew httr jsonlite]; }; - difNLR = derive2 { name="difNLR"; version="1.4.1"; sha256="14q6qc27bsqax0ay6a17wfv2p1v5gn01snc71inwci85gr6a3ck6"; depends=[calculus ggplot2 msm nnet plyr VGAM]; }; + difNLR = derive2 { name="difNLR"; version="1.4.2-1"; sha256="1wrvsjbvvqwpv7cwc445n7l4ly8gvj8hyd66k02ib8r5854zn192"; depends=[calculus ggplot2 msm nnet plyr VGAM]; }; difR = derive2 { name="difR"; version="5.1"; sha256="1cd5kaal5mjrbj1l9ki2wbqasdxphgc2yhaf4xwgbh1nr2zkhr02"; depends=[deltaPlotR lme4 ltm mirt]; }; difconet = derive2 { name="difconet"; version="1.0-4"; sha256="0cjadi4mnpfmy18vyp0dw55mnhs0zddf51w59gvq6gszk145z3bq"; depends=[data_table gplots mvtnorm stringr]; }; diffEnrich = derive2 { name="diffEnrich"; version="0.1.2"; sha256="0fa0v24ir8an82mx38489zavqfya3130q9z52dmm62lnf7pvkvzl"; depends=[dplyr ggnewscale ggplot2 here reshape2 rlang stringr]; }; @@ -8385,7 +8490,7 @@ in with self; { dint = derive2 { name="dint"; version="2.1.4"; sha256="1hkbvf4aidjqmcq79bh2k0lg6ayrrhq60zl1vv93zc6a792i55ka"; depends=[]; }; dipm = derive2 { name="dipm"; version="1.9"; sha256="1hzcwjnjrhd1s31w8pnyhpfz519jvj820jyq1rdkq8qllny5jbrk"; depends=[ggplot2 partykit survival]; }; diproperm = derive2 { name="diproperm"; version="0.2.0"; sha256="0qh8zzpbsjfwh8q833n5pchb6dakqdza77ab7vmsidfbzndka11m"; depends=[dplyr DWDLargeR e1071 ggplot2 gridExtra lemon Matrix sampling SparseM usethis]; }; - dipsaus = derive2 { name="dipsaus"; version="0.2.6"; sha256="136r11nliy8lq7527w0h4lfwn3lmh4nzfj12xggcxvnh15k8mz6k"; depends=[base64enc cli digest fastmap future future_apply jsonlite progressr R6 Rcpp rlang rstudioapi shiny stringr]; }; + dipsaus = derive2 { name="dipsaus"; version="0.2.7"; sha256="0jphpal8yk2qczhwijinwxflgni4xh10mz96n0rpiz8f4scw5mck"; depends=[base64enc cli digest fastmap future future_apply jsonlite progressr R6 Rcpp rlang rstudioapi shiny stringr]; }; diptest = derive2 { name="diptest"; version="0.76-0"; sha256="10629vwn6r2949jjrmj5slbb5v0vnm3w0v8mrl7ws68m2sxmx2jh"; depends=[]; }; dipw = derive2 { name="dipw"; version="0.1.0"; sha256="0nxjwiffi1ivafzha3c35kjk36ai7na0nbfl6x3gpsi2km7b84nd"; depends=[glmnet Matrix Rmosek]; }; directPA = derive2 { name="directPA"; version="1.5"; sha256="0k66x64fi26zlm82v59ya7x6l7ba3hpa5v9dq2ykb20a8zl6spla"; depends=[calibrate plotly]; }; @@ -8396,7 +8501,7 @@ in with self; { dirmult = derive2 { name="dirmult"; version="0.1.3-5"; sha256="05whzhl81nyag7321hw98xa63r440s9bgj1764346yvm9bvzjqi4"; depends=[]; }; dirttee = derive2 { name="dirttee"; version="1.0.1"; sha256="1cdl0jazj0inr1lca0ymqpr5m5ads154scnqfh1lbiaajamqr4xj"; depends=[expectreg formula_tools MASS Matrix mgcv nloptr provenance rlang survival]; }; disaggR = derive2 { name="disaggR"; version="1.0.5"; sha256="0j8p53hy23fpk4wdm5lbg0963dmpc6g1hsymfawxmssfdzdvv24y"; depends=[RColorBrewer]; }; - disaggregation = derive2 { name="disaggregation"; version="0.1.4"; sha256="1h59jpw9fcpmj8axnaymzxx7zc4qbd06cxgrpcv1xb30wnd62hm6"; depends=[cowplot doParallel dplyr foreach ggplot2 maptools Matrix raster RcppEigen rgdal rgeos sp sparseMVN splancs TMB]; }; + disaggregation = derive2 { name="disaggregation"; version="0.2.0"; sha256="0n873a8bxqcgab0qkmxkr4xqg4mafm5qn2lmfclvibv2dhydpkjx"; depends=[cowplot doParallel dplyr foreach ggplot2 maptools Matrix raster RcppEigen rgdal rgeos sp sparseMVN splancs TMB]; }; disbayes = derive2 { name="disbayes"; version="1.0.0"; sha256="1fx3la8x4h3bazvfnvlq5cnnz528wkfm9k12ic7id303qaxx3ia7"; depends=[BH dplyr generics ggplot2 loo magrittr matrixStats mgcv Rcpp RcppEigen RcppParallel rstan SHELF StanHeaders tibble tidyr]; }; discAUC = derive2 { name="discAUC"; version="1.0.0"; sha256="1lw4ikrgb0w88k7gjyjv3qq0xy4h588rq7sgqk1w6zhv3qr8k34z"; depends=[dplyr glue rlang tibble]; }; discSurv = derive2 { name="discSurv"; version="2.0.0"; sha256="0k585cyz02vqk4w7w20rhn6g9rspmmlbdpv7k837021iyhwwb838"; depends=[data_table functional geepack mgcv mvnfast mvtnorm ranger Rdpack rpart treeClust VGAM]; }; @@ -8404,6 +8509,7 @@ in with self; { discharge = derive2 { name="discharge"; version="1.0.0"; sha256="1hwsdrbajmpfdc9arb1pjhx2w45dy3zrba9ibcrnpyqhhr4i1c5m"; depends=[boot checkmate CircStats ggplot2 lmom]; }; disclap = derive2 { name="disclap"; version="1.5.1"; sha256="0qsycr04xz1h90jyzxwagfkc4rkc8mb9srasvhrp7grynjxlbb9f"; depends=[]; }; disclapmix = derive2 { name="disclapmix"; version="1.7.4"; sha256="1rc5kv4abx1hxgkp3vb3f247nv887vrh9l2y189blq0p6k258575"; depends=[cluster disclap MASS Rcpp RcppProgress]; }; + disclapmix2 = derive2 { name="disclapmix2"; version="0.6.1"; sha256="0lqg4wvx7jf4an2x3lq9486m5741djkw8q506vbn8xlh4gxwmp3s"; depends=[cluster Rcpp]; }; discnorm = derive2 { name="discnorm"; version="0.2.1"; sha256="05pzrrv2pwd3m15f8qxy0m2gsam3qw71bvapf061rbw1lzmr62b6"; depends=[arules copula cubature GoFKernel lavaan MASS mnormt pbivnorm sirt]; }; discord = derive2 { name="discord"; version="1.1.0"; sha256="0is9gwj09zj25hklsxgi3k7ypq2qp2yx0vir6wgpnd30wa11zs5h"; depends=[]; }; discourseGT = derive2 { name="discourseGT"; version="1.1.8"; sha256="1243ihkn7l9308fqrhfjc83m02vwxk925i89a1wvz0v3q3zks2vp"; depends=[dplyr GGally ggplot2 ggrepel igraph network]; }; @@ -8416,9 +8522,9 @@ in with self; { discrim = derive2 { name="discrim"; version="1.0.1"; sha256="098021yq1bdqd0hnpv3lh4w7zna2v0kn4pbsffgbkigg0qi8cgm0"; depends=[dials parsnip rlang tibble withr]; }; discrtr = derive2 { name="discrtr"; version="0.0.1"; sha256="03xafiy7fjxsincbwbz1y0xv372yd7cs8sbmqvv2s3glx6jdxk07"; depends=[magrittr rmdformats]; }; disdat = derive2 { name="disdat"; version="1.0-1"; sha256="1m22pichm603gn9h94vx0kmds28krlp9ax1yrsfwx12rqchcdhk7"; depends=[]; }; - disk_frame = derive2 { name="disk.frame"; version="0.8.1"; sha256="1yb8klkrlfrpvhmzrnz3xmlm1s3k696ikj5186gsh12cg0wm4yzl"; depends=[arrow benchmarkme bigreadr bit64 crayon data_table dplyr fs fst future future_apply globals glue jsonlite pryr purrr Rcpp rlang stringr]; }; + disk_frame = derive2 { name="disk.frame"; version="0.8.2"; sha256="1mx3lqgasxmqxwrwslmrfcjh7gmd2f6ypz23k1x05bgrhckwhlws"; depends=[arrow benchmarkme bigreadr bit64 crayon data_table dplyr fs fst future future_apply globals glue jsonlite pryr purrr Rcpp rlang stringr]; }; diskImageR = derive2 { name="diskImageR"; version="1.0.0"; sha256="1r19k5fdjn6vkn11p5df77fnxfqaz3nciiaai0f3pr2bgpfppzka"; depends=[subplex zoo]; }; - dismo = derive2 { name="dismo"; version="1.3-9"; sha256="1vmyjch2nv7x80kj453bjbzfsdyhcmf9hw68lh2b05kpnqfm491r"; depends=[raster Rcpp sp terra]; }; + dismo = derive2 { name="dismo"; version="1.3-14"; sha256="1msc75xnc9lbnn8pivd5j4jvb1b9p3xgybfm2ak2mpb2aplz5837"; depends=[raster Rcpp sp terra]; }; disordR = derive2 { name="disordR"; version="0.9"; sha256="1vkfiwr94yqbjm2rcch6z4affdnihmzx1k1cf3vp30w04qxnxz0r"; depends=[digest Matrix]; }; dispRity = derive2 { name="dispRity"; version="1.7.0"; sha256="0qrmhlmbkg0jr9dhfmx46y8vh7nmydmm0sscnj4zrz7wf7myavrm"; depends=[ade4 ape castor Claddis ellipse geometry MASS mnormt phangorn phyclust scales vegan]; }; disparityfilter = derive2 { name="disparityfilter"; version="2.2.3"; sha256="0dkk3qws631mf0g02di5rsrvh5954cykysyri0g8aqgik0j9dg06"; depends=[igraph]; }; @@ -8444,7 +8550,7 @@ in with self; { distillery = derive2 { name="distillery"; version="1.2-1"; sha256="1ymmxyamkq0zbz2m4gllln1ihks2hcib6gs0mls92as79srz122b"; depends=[]; }; disto = derive2 { name="disto"; version="0.2.0"; sha256="09pafy8y1ifgglqmal32dy34acx06ypsq2bgwsn6fjiqr9kw401j"; depends=[assertthat broom dplyr factoextra fastcluster fastmatch ggplot2 pbapply proxy tidyr]; }; distory = derive2 { name="distory"; version="1.4.4"; sha256="1ljrs91h4v1h5lb295hjki8bmra2lg3d1bn5x731pnv43pf3ck06"; depends=[ape]; }; - distr = derive2 { name="distr"; version="2.9.1"; sha256="0pqss05qs209nbv78n01zhap15pshjkpvk4czz3ja06l1flr1dw2"; depends=[MASS sfsmisc startupmsg]; }; + distr = derive2 { name="distr"; version="2.9.2"; sha256="0c1fkb9jqj5mhs766hrwys9zd1xbf9j98bwy03xxwxbbsrz82amm"; depends=[MASS sfsmisc startupmsg]; }; distrDoc = derive2 { name="distrDoc"; version="2.8.1"; sha256="1lrh3ml47h3d3j59dfqlbza1vh11b5m16am8ilc2dfbm230xnmf9"; depends=[distr distrEx distrMod distrSim distrTeach distrTEst MASS RandVar startupmsg]; }; distrEllipse = derive2 { name="distrEllipse"; version="2.8.1"; sha256="0nv87i05aa72x9pj26z37j9cwlyzyhgjbv8bphnhvzf7df1a40r2"; depends=[distr distrEx distrSim mvtnorm setRNG startupmsg]; }; distrEx = derive2 { name="distrEx"; version="2.9.0"; sha256="0dgv81bilq5yhwqd7qnp30q8nsaw7vpmh27xw2sl20a0mm3ihz88"; depends=[distr startupmsg]; }; @@ -8453,7 +8559,7 @@ in with self; { distrSim = derive2 { name="distrSim"; version="2.8.1"; sha256="1z6x3bsxp9mrnnygx1048v4iadjs8kkqywjclsixmngb0nm69h61"; depends=[distr setRNG startupmsg]; }; distrTEst = derive2 { name="distrTEst"; version="2.8.1"; sha256="0s22g7sf2q0kj8qcl09vq8prnahmm3iqc0v66kzm6hmhc314k509"; depends=[distrSim setRNG startupmsg]; }; distrTeach = derive2 { name="distrTeach"; version="2.9.0"; sha256="0jf1v4nb900z7jcy3d34z86ykrn52xnimir1l0iv78dkh1kvwsqn"; depends=[distr distrEx startupmsg]; }; - distreg_vis = derive2 { name="distreg.vis"; version="1.7.3"; sha256="1dnpcd0dpbgvnwcc83n15gr9risyzvnp5f45wg11l9fp5yi63s8j"; depends=[bamlss betareg formatR gamlss gamlss_dist ggplot2 magrittr rhandsontable shiny]; }; + distreg_vis = derive2 { name="distreg.vis"; version="1.7.4"; sha256="1wz1vfjcnsn1nd5hqw010is39nn2k0226hczg006jvgfr400hx4y"; depends=[bamlss betareg formatR gamlss gamlss_dist ggplot2 magrittr rhandsontable shiny]; }; distributional = derive2 { name="distributional"; version="0.3.2"; sha256="1y08s301mxz7c54lxa1j0zzbsrgphxv5hsyam3jswcw274rxd0y8"; depends=[digest farver generics ggplot2 lifecycle numDeriv rlang scales vctrs]; }; distributions3 = derive2 { name="distributions3"; version="0.2.1"; sha256="19c8s5qshqzhvl01c7nd9912vyy0nnmc7rfg8iih2jlcpqrdql86"; depends=[ellipsis ggplot2 glue]; }; distributionsrd = derive2 { name="distributionsrd"; version="0.0.6"; sha256="0ykzxcxh5l9l5z3546iqlllryw2xyixz1hiynx19k8bsn8k7dxyp"; depends=[flexmix modeltools Rdpack]; }; @@ -8461,14 +8567,14 @@ in with self; { distrom = derive2 { name="distrom"; version="1.0.1"; sha256="1j8k8cgh5r8av8jf8miq858j66hmkkcdjqhia77iivx97fg9pcjk"; depends=[gamlr Matrix]; }; distrr = derive2 { name="distrr"; version="0.0.6"; sha256="04lhrc92y6dqnfpqlmynjvn2dndzkknnvwsr5pf73dfpgv7n3s1f"; depends=[dplyr magrittr rlang tidyr]; }; disttools = derive2 { name="disttools"; version="0.1.8"; sha256="1jm3nqyywdzpbfvk2mffmhp75al1hcvd5l4r21fbd3iz2anll0ma"; depends=[]; }; - dittodb = derive2 { name="dittodb"; version="0.1.4"; sha256="19qw7xjrix8vlaivha2iaff7rx8i2gp1fk135y59p4rdmm05xfd1"; depends=[DBI digest glue lifecycle]; }; + dittodb = derive2 { name="dittodb"; version="0.1.6"; sha256="0v2pn7cv1myqc2kx300fmknpkljfvkv6306x1nq5cyg4xwjpgm38"; depends=[DBI digest glue lifecycle rlang]; }; div = derive2 { name="div"; version="0.3.1"; sha256="1k4c34wpwfj7yqnk1x9sjzn3dc2vdzhpy8g4c00aqs3nbgcknyn8"; depends=[dplyr ggplot2 gridExtra kableExtra magrittr plotly pryr rlang rpart stringr tibble tidyr tidyverse]; }; divDyn = derive2 { name="divDyn"; version="0.8.2"; sha256="1rqk7ih0j6d3ykx7d0r0c33bcbksw4paman5f92ragw2a96d04cf"; depends=[Rcpp]; }; diveMove = derive2 { name="diveMove"; version="1.6.1"; sha256="1jq24qys802s9cab3r9fag9jq994wjg6vni6sxd2psng846hixic"; depends=[geosphere KernSmooth plotly quantreg uniReg]; }; diveR = derive2 { name="diveR"; version="0.1.2"; sha256="0n0ldc3k0ryr20794kvqxpnk8m3qc13lkl6rxw043pkwbjqj7291"; depends=[cli crayon ggmulti loon loon_data loon_ggplot loon_shiny loon_tourr rstudioapi zenplots]; }; diverge = derive2 { name="diverge"; version="2.0.6"; sha256="0rgmzcy2kk1bc6v27qcj4ckyvidzvldqx3cz1prccq5bhw2m8cdz"; depends=[truncnorm]; }; diverse = derive2 { name="diverse"; version="0.1.5"; sha256="10kmx3qv58xhqs1icsxqq0y0cm8y2hx9ysb65brd3hhg33alzvk3"; depends=[foreign proxy reshape2]; }; - diversitree = derive2 { name="diversitree"; version="0.9-16"; sha256="0rzrk7xsn4gy271pbcw3azndhx0c06bmsgrg6libjmlfnmq6j8sc"; depends=[ape deSolve Rcpp subplex]; }; + diversitree = derive2 { name="diversitree"; version="0.9-18"; sha256="045c67ka24ksaff7q3dzhsb5r38zysfrs1qxn9zhcvrardjka283"; depends=[ape deSolve Rcpp subplex]; }; diversityForest = derive2 { name="diversityForest"; version="0.4.0"; sha256="1yp9lwr5sj8mv1sxrrjsx00m2aq02xcs3q06v51h29g686rdij0f"; depends=[gam ggplot2 ggpubr MapGAM Matrix nnet RColorBrewer Rcpp RcppEigen rlang rms scales sgeostat survival]; }; divest = derive2 { name="divest"; version="0.10.3"; sha256="1blg70i3v7269jlgrzdqdvi3f64ly8zhzmsl2fl3jzf3nigxbkhp"; depends=[Rcpp RNifti]; }; divo = derive2 { name="divo"; version="1.0.1"; sha256="06c4kjl6llvvdr2gk480jcmj2abmqwph7x4vk5nflxm7piimvg7v"; depends=[cluster]; }; @@ -8485,7 +8591,7 @@ in with self; { dlookr = derive2 { name="dlookr"; version="0.6.1"; sha256="0lnnx9r0ai79cbg4dq2aqprfql7s31y7777v1bw0931ia3nd9s51"; depends=[dplyr ggplot2 gridExtra hrbrthemes htmltools kableExtra knitr mice pagedown partykit purrr reactable rlang rmarkdown shiny showtext sysfonts tibble tidyr tidyselect]; }; dlr = derive2 { name="dlr"; version="1.0.1"; sha256="13gr8rk8igbypq9mg00pyk2pjczxr1ghkj5287gijxnxch7zdknc"; depends=[digest fs rappdirs rlang]; }; dlsem = derive2 { name="dlsem"; version="2.4.6"; sha256="1h3bwqqpfjkl41b2mbfhsj0pi9kri0h0i28wiid6arjrmm87nsf8"; depends=[graph Rgraphviz]; }; - dlstats = derive2 { name="dlstats"; version="0.1.6"; sha256="0bs7kgllii2nhb1sspajhlldhjav9gl0y96c949pgfijwbr01vn0"; depends=[ggplot2 jsonlite magrittr RColorBrewer scales]; }; + dlstats = derive2 { name="dlstats"; version="0.1.7"; sha256="1qc7gp2glkbhnblqckz3l7jmlsarf3jlsp6cqm4wm0s87z038r9a"; depends=[ggplot2 jsonlite magrittr RColorBrewer scales]; }; dm = derive2 { name="dm"; version="1.0.5"; sha256="0ffh9mjin9b7r4h49xw9575wj62dqyshygwcpgdz14amqi89w2yw"; depends=[backports cli DBI dplyr glue igraph lifecycle magrittr memoise pillar purrr rlang tibble tidyr tidyselect vctrs]; }; dma = derive2 { name="dma"; version="1.4-0"; sha256="003snr09hazszwqnvjrbv8vyz6ihgcfcfhrlshg451dddn920615"; depends=[MASS]; }; dmai = derive2 { name="dmai"; version="0.4.0"; sha256="0ma89jl0l598sffpikvjj40f2djjcnjq29k6y1bav4dm2g51qgmq"; depends=[dplyr ggplot2 magrittr stringr tibble tidyr]; }; @@ -8508,7 +8614,7 @@ in with self; { doMPI = derive2 { name="doMPI"; version="0.2.2"; sha256="0ahwm17p3gq1yvc8v6sr6sb8z7i6zws8d1pf46qynl0gd4amg938"; depends=[foreach iterators Rmpi]; }; doParallel = derive2 { name="doParallel"; version="1.0.17"; sha256="1mxbg2qqda1775vb4s26gz27p5n91lljgjmlqxq4sras22njasmr"; depends=[foreach iterators]; }; doRNG = derive2 { name="doRNG"; version="1.8.6"; sha256="1qkxa3jxpnn5anhqycqcbk18kw87m9pl5m78q8d89ygihghascjh"; depends=[foreach iterators rngtools]; }; - doRedis = derive2 { name="doRedis"; version="3.0.1"; sha256="1i04kpf24aafs2c7qd74ms2q6093in1x75vlpiw3pwprl6cwkb11"; depends=[foreach iterators redux]; }; + doRedis = derive2 { name="doRedis"; version="3.0.2"; sha256="0vl81hy9aspaxns823m7wsbfxfcbx2xbxl140ci3l79pvz3rwyf5"; depends=[foreach iterators redux]; }; doSNOW = derive2 { name="doSNOW"; version="1.0.20"; sha256="1f5v0k2w0b2478p6iqa3hn2lwd1x3rzc348n57nd38ka2vnsnz4i"; depends=[foreach iterators snow]; }; dobin = derive2 { name="dobin"; version="1.0.4"; sha256="0j10f3smzkwv5j7k4szydn2jlspsb05mf91nzl8fzj803g5657ky"; depends=[dbscan ggplot2 pracma]; }; dobson = derive2 { name="dobson"; version="0.4"; sha256="0xfn7s3wzrv1md40bdjrnjfiqyxg5c6lrcpnvayjdgrhxq161hhq"; depends=[]; }; @@ -8522,6 +8628,7 @@ in with self; { docore = derive2 { name="docore"; version="1.0"; sha256="0x6c2yqr05v62ksn9a5swf44q8w7acfk00589mkipw643rg4l64y"; depends=[bit64 pracma]; }; docreview = derive2 { name="docreview"; version="0.0.1"; sha256="0cmgl1q1whb38iiljaz0f5vyxniyaaxm8xpbzd56cayqgbvl92b8"; depends=[cli parsermd purrr quanteda quanteda_textstats rlang stringr yaml]; }; docstring = derive2 { name="docstring"; version="1.0.0"; sha256="19z5frhxbdc5c4vrkckgqbh9mx4d9w1icw8szsw9yadvbg48nlhl"; depends=[roxygen2]; }; + doctest = derive2 { name="doctest"; version="0.2.0"; sha256="1sszyza5c0rj23k8rl1anlkwblq27qhhl2pgwmbv6nq03dk8p60g"; depends=[cli fs pkgload purrr rlang roxygen2 testthat]; }; docuSignr = derive2 { name="docuSignr"; version="0.0.3"; sha256="0q90z31svbdnvylfr0yj2f0gahvpi089c1d5llvwqy8qc5p9fbqw"; depends=[httr jsonlite magrittr]; }; documenter = derive2 { name="documenter"; version="0.1.3"; sha256="0azwak0hm7xydamvaj42hy1kl8an9f90i2lm91va7n08vmn8k064"; depends=[htmltools magrittr officer yaml]; }; docxtools = derive2 { name="docxtools"; version="0.3.0"; sha256="0zfmmwnjzja80krflg2cl9a1ldg6qj1m0gppralfs59ag1jr7kqh"; depends=[dplyr ggplot2 lubridate purrr rlang stringr tidyr]; }; @@ -8529,9 +8636,9 @@ in with self; { dodgr = derive2 { name="dodgr"; version="0.2.19"; sha256="0k0b5d8vcggw0z94d71b5ywijaffqyg6if915vvs75xs0fs3wnc6"; depends=[callr digest fs magrittr osmdata Rcpp RcppParallel RcppThread]; }; doebioresearch = derive2 { name="doebioresearch"; version="0.1.0"; sha256="1rmvb6pa71frvjszpsjaw3ahm70kyykrq6zfjqk8smgcg397k9pi"; depends=[agricolae]; }; doex = derive2 { name="doex"; version="1.2"; sha256="1r999z30ipa04pgck0hfalqxihb1bj8sdhlkkhf4plb7maaz3qm3"; depends=[]; }; - dogesr = derive2 { name="dogesr"; version="0.2.0"; sha256="1w2qmvpasi971dl0ll15f8nraad97qbhc5p9q2byw9q85j651ybr"; depends=[dplyr ggplot2 igraph knitr qpdf Rdpack rmarkdown]; }; + dogesr = derive2 { name="dogesr"; version="0.3.0"; sha256="05jlhzqqhmjb0s5h0g3ah9b491xn776yn3rsdmyvqzk742284knr"; depends=[dplyr ggplot2 igraph knitr qpdf Rdpack rmarkdown]; }; domino = derive2 { name="domino"; version="0.3.1"; sha256="0f67w0z5jy82kgm3l1rji430ayigw30vmmwp3i1nz0xibsx7jxv4"; depends=[]; }; - domir = derive2 { name="domir"; version="1.0.0"; sha256="10kqza6r8nxlvmcx3bfqfyfvivv4pdkm7qqc859384n7dyjx88nx"; depends=[]; }; + domir = derive2 { name="domir"; version="1.0.1"; sha256="01dhc0s0223ydkbfnpvv0jp8pmpkmcnr2wksv16jm1ndy1bwwjsp"; depends=[]; }; donut = derive2 { name="donut"; version="1.0.2"; sha256="0idynkhcdn9va32m1n1rxjyb7ghbkhyy1959wks2bn1a7k4yg87i"; depends=[]; }; doolkit = derive2 { name="doolkit"; version="1.42.2"; sha256="0hyqbpnhzjsx7ml0z6n9z60yhp5c0dyicm3jfc841aykvb1ifqbp"; depends=[concaveman ggplot2 igraph MASS Morpho rgl Rvcg sp tis usethis]; }; doremi = derive2 { name="doremi"; version="1.0.0"; sha256="005kp6f4jh8y1ykhri3mjnvc9w66b1a51bji574rkbxd1ans6mal"; depends=[data_table deSolve futile_logger ggplot2 gridExtra lme4 lmerTest zoo]; }; @@ -8561,7 +8668,7 @@ in with self; { dpcc = derive2 { name="dpcc"; version="1.0.0"; sha256="1f4c68bvkwg82k1zanjhqqika2bfjv83mbr2khl5lhvfjwvpi1m0"; depends=[Rcpp]; }; dplR = derive2 { name="dplR"; version="1.7.4"; sha256="1gnihbgbw5dimnzf23fhlkwairfdaixs7ss6rkhk45y551hbwf65"; depends=[boot digest lattice Matrix matrixStats plyr png R_utils signal stringi stringr XML]; }; dplbnDE = derive2 { name="dplbnDE"; version="0.1.2"; sha256="0vklb07h4izgpdi7w92gv87d1gl2fbdgpcq3b1ig9d55m37ssbsx"; depends=[bnclassify]; }; - dplyr = derive2 { name="dplyr"; version="1.1.1"; sha256="1xxvspk1nyns39dp2fqvxbvvnkkz4rcgmhrcrznr3h1qpayj9p6z"; depends=[cli generics glue lifecycle magrittr pillar R6 rlang tibble tidyselect vctrs]; }; + dplyr = derive2 { name="dplyr"; version="1.1.2"; sha256="1qwn00ai7k6km0z9kl6aa1qjkfz8j3prlgdfxr1pr5s47a5c6862"; depends=[cli generics glue lifecycle magrittr pillar R6 rlang tibble tidyselect vctrs]; }; dplyrAssist = derive2 { name="dplyrAssist"; version="0.1.0"; sha256="1lqizh70b1apyr4578917gv6s0i7p84ak96a57kvwipmh36a4ywn"; depends=[DT magrittr miniUI plyr rstudioapi shiny shinyAce shinyWidgets stringr tidyr tidyverse]; }; dpmr = derive2 { name="dpmr"; version="0.1.9"; sha256="1cnjywkvjb4fhbf4shjmsrq47f1fg2x21hcm1q5512bm0wg9i6jd"; depends=[digest httr jsonlite magrittr rio]; }; dppmix = derive2 { name="dppmix"; version="0.1.1"; sha256="1gq51kix0jln25gr6bffzdy24fhn6cd3gmyl3jlmvqvni4vwswy7"; depends=[mvtnorm]; }; @@ -8581,13 +8688,15 @@ in with self; { drawer = derive2 { name="drawer"; version="0.2.0.1"; sha256="165w0lk6kp0hw85y1q3wj50jn5jbi4rn00vgz8q0wy68qw2ymhh5"; depends=[bsplus glue htmltools magrittr shiny stringr]; }; drawsample = derive2 { name="drawsample"; version="1.0.1"; sha256="018v4amapfwxx6k4s9drcv2vwil7cplnkwlrhy9djc0a02jxx2l5"; depends=[dplyr lattice moments psych readxl shiny shinycssloaders shinydashboard tibble xlsx]; }; drc = derive2 { name="drc"; version="3.0-1"; sha256="0c8xn8ripzq270hy8d16fcnx02l02alddznd7fqwk3jyi6113h1y"; depends=[car gtools MASS multcomp plotrix scales]; }; + drcSeedGerm = derive2 { name="drcSeedGerm"; version="1.0.1"; sha256="19fyfw5r994l5sbfrh8ar4kqc27j0pgdks1cp7liql6dw5iliyp4"; depends=[dplyr drc drcte mvtnorm plyr survival]; }; + drcte = derive2 { name="drcte"; version="1.0.30"; sha256="0gpzpmk5v1lr03gl710kp4d4ldfskjr5s66wcl00abg3kz8jpixn"; depends=[dplyr drc lmtest MASS mclust multcomp nor1mix plyr sandwich survival tidyr]; }; drda = derive2 { name="drda"; version="2.0.3"; sha256="1s3d0hpxl47rirsig5gbs0q3i6dj2hjzza3655381fla5n0yx9ap"; depends=[]; }; dreamer = derive2 { name="dreamer"; version="3.1.0"; sha256="10yvdg5nkw4nawy9hdqyrsgh01xga8l3hn3qi1sbjzniv7903v7d"; depends=[coda dplyr ellipsis ggplot2 purrr rjags rlang rootSolve tidyr tidyselect]; }; dreamerr = derive2 { name="dreamerr"; version="1.2.3"; sha256="0g3gl4nzfw02alhyjw9flylfr2awyijjim50j1jdnp677zqlxkmf"; depends=[Formula]; }; drf = derive2 { name="drf"; version="1.1.0"; sha256="13b31rynknzirnvgygs1ar5968xdh8dhg60ibn0g359gnzadn7ad"; depends=[fastDummies Matrix Rcpp RcppEigen transport]; }; drfit = derive2 { name="drfit"; version="0.7.2"; sha256="03ahzmjzrkdrv36yj6vfg3g5bwn6lb7mlxmli68sixag5h83xq7f"; depends=[DBI drc MASS odbc qcc reshape2]; }; drgee = derive2 { name="drgee"; version="1.1.10"; sha256="0hy7887mvlxh73zk2yzp46bqakq924n940j21lw25jgygmzz1176"; depends=[data_table nleqslv Rcpp RcppArmadillo survival]; }; - drhur = derive2 { name="drhur"; version="1.0.0"; sha256="1dnd9iwcfgxmrnwnhjdz7qfvnjsscps39q25bkk8jg2fh2k6jgyp"; depends=[learnr]; }; + drhur = derive2 { name="drhur"; version="1.1.0"; sha256="06zy2acgmhfc1criid35ci1802zl77qcif2vrhn0w8syixsbjiq8"; depends=[learnr]; }; drifter = derive2 { name="drifter"; version="0.2.1"; sha256="1xsp8cm02wd8zink0jqrdaii7s2dh0rw96rs6k8zr2g0341wmfba"; depends=[DALEX dplyr ingredients tidyr]; }; drimmR = derive2 { name="drimmR"; version="1.0.1"; sha256="0fi0ifb9y2jfb347684fd9pjfgn4b693yb5sqbcfpf2z7jvknsi1"; depends=[doParallel dplyr foreach future ggplot2 Rdpack reshape2 seqinr tidyverse]; }; driveR = derive2 { name="driveR"; version="0.4.0"; sha256="1zjpp8fff89hd7nbianm6ff88ws7j3z656awyz1ffb96rnhk1c6x"; depends=[caret GenomeInfoDb GenomicFeatures GenomicRanges org_Hs_eg_db randomForest rlang S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; @@ -8607,8 +8716,8 @@ in with self; { dscore = derive2 { name="dscore"; version="1.8.0"; sha256="0dyhhrdkca0091nk0a70ckk9187g5rfzz1bqw666hv40yzq0sk97"; depends=[dplyr Rcpp RcppArmadillo stringr tidyr tidyselect]; }; dsdp = derive2 { name="dsdp"; version="0.1.1"; sha256="0n0cyqzwv97wqq8m8a3qr6bg2p07ky9dm6hmlxwd2ggxrn3kmxv8"; depends=[ggplot2 rlang]; }; dse = derive2 { name="dse"; version="2020.2-1"; sha256="170rxrniszs8h59ah4mn4mz8d7kzix4g3vlz4icd8w6bl40c6ykc"; depends=[setRNG tfplot tframe]; }; - dsfa = derive2 { name="dsfa"; version="2.0.0"; sha256="0jx71fhn347czhbjg0aajaba8mzqf942j2d0vfyc0czmqnldcrg5"; depends=[copula gratia mgcv Rcpp RcppArmadillo Rdpack]; }; - dslabs = derive2 { name="dslabs"; version="0.7.4"; sha256="05v51rckpfjz2cbms250sv0q34l0ip841w9ardvs51s2x7r8qypc"; depends=[ggplot2]; }; + dsfa = derive2 { name="dsfa"; version="2.0.1"; sha256="0wlwjn419h27xx60xrbgh3dw5xxr2y4cb20qfkk0yzh8k21ciws1"; depends=[copula gratia mgcv Rcpp RcppArmadillo Rdpack]; }; + dslabs = derive2 { name="dslabs"; version="0.7.5"; sha256="01ns4xav5lgv78rkikwic7zsh1skjigq8acf7pj3d4slf0pl56wj"; depends=[ggplot2]; }; dslice = derive2 { name="dslice"; version="1.2.0"; sha256="1k9hxpmr563p8bpd9m991lx5ig366mzk9j1lzldci9pq4jiayin1"; depends=[ggplot2 Rcpp scales]; }; dsm = derive2 { name="dsm"; version="2.3.3"; sha256="159hlllbp4qy5dxmxgsjcl2ksflq7z7v1ra5d7piyanm9c632q8a"; depends=[ggplot2 mgcv mrds nlme numDeriv plyr statmod]; }; dsmisc = derive2 { name="dsmisc"; version="0.3.3"; sha256="19760hcb5154rayhj72r48r7glh2qyaf178zkxplywmsw338kws4"; depends=[Rcpp stringr]; }; @@ -8616,6 +8725,7 @@ in with self; { dsos = derive2 { name="dsos"; version="0.1.2"; sha256="1qv44wj1dvng1m4lkscn9yylhxsr8ck46wv54vjy9px4g7rmjaq5"; depends=[data_table future_apply ggplot2 scales simctest]; }; dsrTest = derive2 { name="dsrTest"; version="1.0.0"; sha256="1nfwcab6p7swki8d2j2dywj93xidkjqcq84majvq90yabx353jd3"; depends=[asht exactci loglognorm]; }; dst = derive2 { name="dst"; version="1.5.1"; sha256="08cw09hf5jx1qfmrqmhm4713gzq21p0ss3nx7qrs92mpsvprq3yc"; depends=[]; }; + dstabledist = derive2 { name="dstabledist"; version="0.1.0"; sha256="07nvsv0xb6wv0yl7ia7sgm6ysi4w2714pjyqhbzl76mp4c7cx7cd"; depends=[Rdpack stabledist]; }; dstat = derive2 { name="dstat"; version="1.0.4"; sha256="023jp0xdbg200ww1gnr3fzgjqd82acag0jps7q6j6m27q11psvgz"; depends=[]; }; dstat2x2xk = derive2 { name="dstat2x2xk"; version="0.2.0"; sha256="16qbczzjzhmsby8d2sf1xnijiczlk29xazbgl98jbfpmpfzn4q6j"; depends=[BiasedUrn]; }; dtangle = derive2 { name="dtangle"; version="2.0.9"; sha256="0yg1fbrqixqp93vdw3grvz1la5l2kidgs730qp6yihkp3260cxf3"; depends=[DEoptimR]; }; @@ -8633,11 +8743,13 @@ in with self; { dtwSat = derive2 { name="dtwSat"; version="0.2.8"; sha256="1k4xdnx2ca2sr4pba59q86860bzwxsg94mzr56gjdyfp1rmasqv3"; depends=[caret data_table dtw foreach ggplot2 lubridate mgcv plyr proxy raster RColorBrewer Rdpack reshape2 rgdal scales sp xtable zoo]; }; dtwclust = derive2 { name="dtwclust"; version="5.5.12"; sha256="19dmy9jalwp2vcfkzm58g5wf4nmp3290rrsa51prw8xrjj0hk1g3"; depends=[clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix proxy Rcpp RcppArmadillo RcppParallel RcppThread reshape2 RSpectra shiny shinyjs]; }; dual = derive2 { name="dual"; version="0.0.4"; sha256="0ssdq9gjys9iskwpkllp0m2ig2s7j6jmyq1b5j5lkns5f5aqa7j6"; depends=[]; }; + dual_spls = derive2 { name="dual.spls"; version="0.1.4"; sha256="1ap4wngcakfr7q5jji63zlmbz3xw02chbqj4kwg9v9g0bq90y7k4"; depends=[pdist]; }; dualtrees = derive2 { name="dualtrees"; version="0.1.4"; sha256="05mxwiwnv48jf6ya5qmfc7g2w8wkzhk56k9g0gr2m4cpfab7d5h2"; depends=[]; }; duawranglr = derive2 { name="duawranglr"; version="0.6.7"; sha256="0hxmvyl81xlp3vv1w7462cjfa9hdz5lki0p5pn0ik7dv5aap3wbq"; depends=[digest dplyr haven readr readxl]; }; dub = derive2 { name="dub"; version="0.2.0"; sha256="066lzyk44380mf17vx4db4a3a4rs7zl85mj5hjg172khjbqnbixw"; depends=[]; }; - duckdb = derive2 { name="duckdb"; version="0.7.1-1"; sha256="19hwnwyp63fzg8i3spxxpr8nnxni3hvcbhnrkk0hp2jr79xpzky2"; depends=[DBI]; }; + duckdb = derive2 { name="duckdb"; version="0.8.0"; sha256="0j3nr4k87dfi1r7qfki85cm46g2c2k3hw4i1hp6477bkr2r3mxxl"; depends=[DBI]; }; duckduckr = derive2 { name="duckduckr"; version="1.0.0"; sha256="1wki8xvqp5hr27iafd9jbryl9faywfkdkpn0pa0afywbic39k2cm"; depends=[crul jsonlite]; }; + duke = derive2 { name="duke"; version="0.0.1"; sha256="1frnf4kxjjrxbwhc06pcjzmr5zdcdx2ssw5avc2jq54r8d7h3j23"; depends=[ggplot2 scales]; }; dumbbell = derive2 { name="dumbbell"; version="0.1"; sha256="0v0b4wbfskvcnzx10z9v4rf3mq8ccswz63pd6i1z7mggnwv38ps5"; depends=[data_table dplyr ggplot2 rlang rstatix tidyr tidyverse]; }; dummy = derive2 { name="dummy"; version="0.1.3"; sha256="081a5h33gw6ym4isy91h6mcf247c2vsdygv9ll07a3mgjcjnk79p"; depends=[]; }; dundermifflin = derive2 { name="dundermifflin"; version="0.1.1"; sha256="0rp8p4ln92kfxkczl7vi9r2jhxb1ky203s02940cjjkczsphpcc1"; depends=[crayon stringi]; }; @@ -8648,7 +8760,6 @@ in with self; { dvqcc = derive2 { name="dvqcc"; version="0.1.0"; sha256="011mwdwh046wninfjdy00wxn312ykzn90nz9fz3l7c5cw9gzzfkg"; depends=[ggplot2 tsDyn]; }; dwdradar = derive2 { name="dwdradar"; version="0.2.7"; sha256="0y75gd9d7y2myp6filg2liv1r8rxwnffa9y9b2dq283m8kcwwai0"; depends=[]; }; dwlm = derive2 { name="dwlm"; version="0.1.0"; sha256="0n5dil9qvyy4gish3wnv8bzq0ci1p0dr2vmbbadl29jl7rd1v0rc"; depends=[]; }; - dwp = derive2 { name="dwp"; version="1.0"; sha256="1q8gbn18gsgknazzvdg5qg2lzqdaz3x14w210hw06q98dfpkvfih"; depends=[boot expint GenEst gtools invgamma magrittr MASS matrixStats mvtnorm numDeriv plotrix pracma sf statmod VGAM]; }; dyads = derive2 { name="dyads"; version="1.2.1"; sha256="0nx4gx51p0qz1565yn7xg0ijrkqvn9ql9hrmp5lwl4lxvsjnwki1"; depends=[CholWishart MASS mvtnorm RcppZiggurat Rfast]; }; dycdtools = derive2 { name="dycdtools"; version="0.4.3"; sha256="06hm00mfkkg5yxpf30xb4i21bna0hpa0g86vx9qz9vf7f7cvdwjx"; depends=[dplyr ggplot2 hydroGOF lubridate ncdf4 R_utils RColorBrewer tidyr]; }; dydea = derive2 { name="dydea"; version="0.1.0"; sha256="15alr3f6wkkpjd5wmcjazi58yc8gwcqr662mjwlfg15r94fzqrlg"; depends=[Chaos01]; }; @@ -8667,9 +8778,8 @@ in with self; { dynamicSDM = derive2 { name="dynamicSDM"; version="1.2"; sha256="1j0bjc7p2p3553jzy5q3cmxpg7mqzvm944i9lcfgrd528lqr5w0h"; depends=[dplyr geodist geosphere googledrive lubridate magrittr raster readr reticulate rgee sf sp spThin tidyr]; }; dynamicTreeCut = derive2 { name="dynamicTreeCut"; version="1.63-1"; sha256="1fadbql7g5r2vvlkr89nlrjxwp4yx4xrdqmv077qvmnx9vv0f4w3"; depends=[]; }; dynamichazard = derive2 { name="dynamichazard"; version="1.0.2"; sha256="1khfy2fhvzgp165arj1yqvqi5p6lg94sxikwp5s5dxnsgzny00xm"; depends=[boot Rcpp RcppArmadillo survival]; }; - dynamite = derive2 { name="dynamite"; version="1.3.1"; sha256="0xidyjfi1mqvazwncxjzgxbkb4dcanq1i18h93wdyr4qsxs860dg"; depends=[checkmate cli data_table ggplot2 glue loo patchwork posterior rlang rstan tibble]; }; dynatop = derive2 { name="dynatop"; version="0.2.3"; sha256="06wp8ld22k3r76imsj8wkrpplmbdlgbl71p94ddglwp8yfq1igsp"; depends=[R6 Rcpp xts zoo]; }; - dynatopGIS = derive2 { name="dynatopGIS"; version="0.2.4"; sha256="0g4v48nvzsby6h2rr65s7palc3bsp552cmrsins56kmh0dmwdm0c"; depends=[jsonlite R6 terra]; }; + dynatopGIS = derive2 { name="dynatopGIS"; version="0.2.5"; sha256="1sv519dc7fs6zrwnyggkzrcy866a6pgag0shk6rr6cd3xa1blwpv"; depends=[jsonlite R6 terra]; }; dyncomp = derive2 { name="dyncomp"; version="0.0.2-1"; sha256="13wp2k8nbgrbrqng2dmgy0ixgidk51wq9y7mv5pdbvdajxdsyh11"; depends=[zoo]; }; dyndimred = derive2 { name="dyndimred"; version="1.0.4"; sha256="1rj45bgms1x0zm1xjw2ylm45w9xnd68pmgb8dckzkszqg27d0fbh"; depends=[dynutils irlba lmds tibble]; }; dynetNLAResistance = derive2 { name="dynetNLAResistance"; version="0.1.0"; sha256="018y3m648ni31rlisjfnrx1d10mm48wpxanlnnxxpnqxjcywg2x8"; depends=[doParallel foreach igraph]; }; @@ -8685,13 +8795,13 @@ in with self; { dynr = derive2 { name="dynr"; version="0.1.16-91"; sha256="0h2mgnqhcq420f0qqbgnkjk1wbgr9x2fk8hrk22j01mzhc4lmsm5"; depends=[car deSolve fda ggplot2 latex2exp magrittr MASS Matrix mice numDeriv plyr Rdpack reshape2 stringi tibble xtable]; }; dynsbm = derive2 { name="dynsbm"; version="0.7"; sha256="169yk539vynjbn89q6vs3l3fx7hk8n3i1msa4jws5vypgljc2rir"; depends=[RColorBrewer Rcpp riverplot]; }; dynsim = derive2 { name="dynsim"; version="1.2.3"; sha256="1fk23cp2hvkn7msxrdc9cnm4pmcmhcdf3q6rwm507bniigrswnx4"; depends=[ggplot2 gridExtra MASS]; }; - dynsurv = derive2 { name="dynsurv"; version="0.4-3"; sha256="1vqf0f3x671vz1w5s2axq159jb1pzjx402qjiwy5ymp05vi0kql3"; depends=[BH data_table ggplot2 nleqslv splines2 survival]; }; + dynsurv = derive2 { name="dynsurv"; version="0.4-4"; sha256="0dpc0a7ijzi8my3ifipgyvq1p7kibbs7r89wsddpvlr290ls61vw"; depends=[BH data_table ggplot2 nleqslv splines2 survival]; }; dyntaper = derive2 { name="dyntaper"; version="1.1"; sha256="0i8snv70hzsywijivkxphm7xcp64r7kh8v6hiy0hh4hh624i120i"; depends=[]; }; dynutils = derive2 { name="dynutils"; version="1.0.11"; sha256="06an2bm1d131v28m240vii2wisbz3zs32wbamm2w7r8rl3yrxkh9"; depends=[assertthat crayon desc dplyr magrittr Matrix proxyC purrr Rcpp remotes stringr tibble]; }; dynwrap = derive2 { name="dynwrap"; version="1.2.3"; sha256="0670ibia0475mx4pxhjac5nw3h93cmk1kkarhmp6550qi6jqq3s2"; depends=[assertthat babelwhale crayon dplyr dynparam dynutils glue igraph magrittr Matrix processx purrr readr reshape2 stringr tibble tidyr yaml]; }; e1071 = derive2 { name="e1071"; version="1.7-13"; sha256="0bvbgcbj8a5z3rv4z4cx6dlwhk374fwd8l1jkq7slsbfmy8y356s"; depends=[class proxy]; }; eAnalytics = derive2 { name="eAnalytics"; version="0.1.4"; sha256="15hhd4q2yxzq3a3awvk81ixa43hk519ym8ap7v1ahghyr0njnyyf"; depends=[dplyr DT energyr googleVis leaflet plotly shiny shinydashboard shinytest shinyWidgets]; }; - eBsc = derive2 { name="eBsc"; version="4.15"; sha256="0xw2fbkd4z0k9a65izhnirssnbnhmwbmby12x25mda9711acsmw5"; depends=[Brobdingnag MASS Matrix nlme Rcpp RcppArmadillo]; }; + eBsc = derive2 { name="eBsc"; version="4.17"; sha256="18k622687qvp6q8m2ycn9ppwvv2jh76dj92vfkl0b99jng2hv1zl"; depends=[Brobdingnag MASS Matrix mvtnorm nlme Rcpp RcppArmadillo]; }; eCAR = derive2 { name="eCAR"; version="0.1.2"; sha256="1ps98abmdv8xf8xsnif95yg8z8564nlysv8vncp3cl5wc03pknhl"; depends=[Matrix]; }; eChem = derive2 { name="eChem"; version="1.0.0"; sha256="0wmf204hqd4s5har5l9bkcbrbmbqbb8m11w2aivi2gs98f3hy51p"; depends=[animation plot3D]; }; eDMA = derive2 { name="eDMA"; version="1.5-3"; sha256="0wyp81si6lcispqng4c7lii22qbyblvijgnlxvcsnkcxj5hpm76j"; depends=[Rcpp RcppArmadillo xts zoo]; }; @@ -8719,7 +8829,6 @@ in with self; { easyCODA = derive2 { name="easyCODA"; version="0.34.3"; sha256="1s1zjjvswl3444m84n6c5sznva4y19kcm171xkcy1zdx3wqmd2m3"; depends=[ca ellipse vegan]; }; easyDes = derive2 { name="easyDes"; version="6.0"; sha256="12p7ls0q9srrz5h0f0996mmw33shrfbya481s0d5d509vbw8ik6d"; depends=[multcomp PMCMRplus]; }; easyDifferentialGeneCoexpression = derive2 { name="easyDifferentialGeneCoexpression"; version="1.0"; sha256="1dzm01hscq8dyb2kpra3bh9hfh6pjwvxbf4dip18sjgsl8vn058r"; depends=[annotate Biobase diffcoexp geneExpressionFromGEO GEOquery jetset limma magrittr R_utils stringi xml2]; }; - easyNCDF = derive2 { name="easyNCDF"; version="0.1.1"; sha256="1ffpl5zf9i62ifiasimv32j9s9bpmbqi9wrv520124arv4lwcyix"; depends=[abind ClimProjDiags ncdf4]; }; easyPSID = derive2 { name="easyPSID"; version="0.1.2"; sha256="0npih5xpf2a5xw2iz68z9ckm8d4cpradzzdn50rdpg4gqvaq7azp"; depends=[foreign LaF stringr]; }; easyPubMed = derive2 { name="easyPubMed"; version="2.13"; sha256="1wd8idyqz7kgygp34mjp2abx82775ry8l07vsqdlqnc6fdnvg55d"; depends=[]; }; easySVG = derive2 { name="easySVG"; version="0.1.0"; sha256="03gl5gl0yqgpygd4kna79wrhflbnq3zrz3iq2i8hk9xqd83mszh3"; depends=[]; }; @@ -8740,7 +8849,7 @@ in with self; { eat = derive2 { name="eat"; version="0.1.4"; sha256="1s286b6wx0d59n2v3hf6s1zy1f15mwf6ssrpwciard3giccnf556"; depends=[conflicted dplyr ggparty ggplot2 ggrepel lpSolveAPI partykit Rdpack reshape2]; }; eatATA = derive2 { name="eatATA"; version="1.1.1"; sha256="1pm66hvjqcgjbdkvfwxn3myzb6a458hkwg7cd6lhkp1mmj7anigs"; depends=[lpSolve mathjaxr Matrix Rglpk]; }; eatDB = derive2 { name="eatDB"; version="0.5.0"; sha256="0lym1g411ykb2vzi5yr570lmyh30br667wkm5dvnvfs7bsmk05il"; depends=[DBI RSQLite]; }; - eatGADS = derive2 { name="eatGADS"; version="0.20.0"; sha256="1wr186fzrpi3dix27m55xvkx55rgbdzx5zgs6gngwjzljqzhwa92"; depends=[data_table eatDB eatTools haven hms plyr stringi tibble]; }; + eatGADS = derive2 { name="eatGADS"; version="1.0.0"; sha256="0dgnh7lbb5wi8zg0g8lbg9k4w89sl7z9xjgr4x1pyx6wmjfmfran"; depends=[data_table eatDB eatTools haven hms plyr stringi tibble]; }; eatRep = derive2 { name="eatRep"; version="0.14.7"; sha256="11yz0g83ngzab8gqi2mq4s28j7yvl06jf4clwb8vfjqa7lwpfcgq"; depends=[BIFIEsurvey boot car combinat eatGADS eatTools EffectLiteR estimatr fmsb Hmisc janitor lavaan lme4 mice miceadds msm plyr progress reshape2 survey tidyr]; }; eatTools = derive2 { name="eatTools"; version="0.7.4"; sha256="0qmbwwvqfkyd4z41hihza0996dvsvqshs3pqblfzdlbzyn7glh5b"; depends=[data_table]; }; ebGenotyping = derive2 { name="ebGenotyping"; version="2.0.1"; sha256="1jllzc7kvvckrws8qhgvwy626llyb68sp1davp7swx48sf7rwcxc"; depends=[]; }; @@ -8748,24 +8857,25 @@ in with self; { ebal = derive2 { name="ebal"; version="0.1-8"; sha256="06hkk0fargzhzqn841c406r72y7jd53mjxgi4hzb2ahnpaiq2q1l"; depends=[]; }; ebci = derive2 { name="ebci"; version="1.0.0"; sha256="00fa2y4ha9nlbjd01qckrrn721s63ja61n5jr4wm7ac6y7xivb2i"; depends=[]; }; ebdbNet = derive2 { name="ebdbNet"; version="1.2.7"; sha256="1n3ak1bzd3p6izpw2r4ckd32wpdw5m2s4qsf6fg9gpwk9l4vn603"; depends=[igraph]; }; - ebirdst = derive2 { name="ebirdst"; version="2.2021.0"; sha256="1n1mn35in6lmvzzbbc4qkrb5mi26gk85i7370511f0qz3ih5nxji"; depends=[DBI dplyr ggplot2 gridExtra jsonlite magrittr rlang RSQLite sf stringr terra tidyr viridisLite]; }; + ebirdst = derive2 { name="ebirdst"; version="2.2021.3"; sha256="1brd9awy43cl45jv7ndkvv21zrrd0fx1llwwxy1mqncdbwbnn65j"; depends=[DBI dplyr ggplot2 gridExtra jsonlite magrittr rlang RSQLite sf stringr terra tidyr viridisLite]; }; ebmc = derive2 { name="ebmc"; version="1.0.1"; sha256="1z6s1blc2b6b13pk2sd6lcczdcldgjh65cnycjcw7d2g2hnxcifh"; depends=[C50 e1071 pROC randomForest rpart smotefamily]; }; ebnm = derive2 { name="ebnm"; version="1.0-9"; sha256="0izzfylcmq6zajngjyw85kbr8jys49qcgsadqkj85v2k1hg2jw7q"; depends=[ashr deconvolveR dplyr ggplot2 horseshoe magrittr mixsqp rlang truncnorm trust]; }; ebreg = derive2 { name="ebreg"; version="0.1.3"; sha256="1xrs9afjd5hkdmhglj3md5i5hm7awlcdlccz3y2lw4c73lx31ywz"; depends=[lars Rdpack]; }; - ebvcube = derive2 { name="ebvcube"; version="0.1.2"; sha256="02zmq4437r6d2988vwlb21x6i4hgvg3mn790qqxsz5qjivpnfz21"; depends=[checkmate curl DelayedArray ggplot2 HDF5Array jsonlite memuse ncdf4 ncmeta reshape2 rhdf5 stringr terra tidyterra withr]; }; + ebvcube = derive2 { name="ebvcube"; version="0.1.4"; sha256="00fcz8ibs2jahkndsh3cz0gm8pmzhvmvpgwi2n5qgfljbb810mnx"; depends=[checkmate curl DelayedArray ggplot2 HDF5Array jsonlite memuse ncdf4 ncmeta reshape2 rhdf5 stringr terra tidyterra withr]; }; ec50estimator = derive2 { name="ec50estimator"; version="0.1.0"; sha256="1zg4p1734q2jzifzfi2lf9wz3687s3cdn0yzkiwbc6w49mgdw877"; depends=[dplyr drc magrittr tibble tidyr]; }; - ecan = derive2 { name="ecan"; version="0.2.0"; sha256="0b0p8g20zh775539654agdpak6adgk9fzik6nazyv18irgnakbi8"; depends=[cluster dave dendextend dplyr ggplot2 jsonlite labdsv magrittr MASS purrr rlang stringr tibble tidyr vegan]; }; - ecb = derive2 { name="ecb"; version="0.4.1"; sha256="1qs3si47bpvc7gvvzaq3sna0s241p6kygvhp1xwcn4117lhjlz5j"; depends=[curl httr rsdmx xml2]; }; + ecb = derive2 { name="ecb"; version="0.4.2"; sha256="19ir0ywbzwyx90mgxqk9byb63afic2fvhrhy174di0pmj522vnr4"; depends=[curl httr rsdmx xml2]; }; ecd = derive2 { name="ecd"; version="0.9.2.4"; sha256="0cdfdbkjjxs78bvvy5zrax0qgcc5fzhlxl3wqapfxigf5xlxlavh"; depends=[digest ggplot2 gridExtra gsl moments optimx polynom Rmpfr RSQLite stabledist xtable xts yaml zoo]; }; ecdfHT = derive2 { name="ecdfHT"; version="0.1.1"; sha256="1n3n9n86pj8c54l3xvp7knvi0ajbnjmz9pi79p7wfq92a90fqx48"; depends=[rgl]; }; ecespa = derive2 { name="ecespa"; version="1.1-17"; sha256="1n96nxb8spyi914m21yybb2yajawz22fmjldbr9j76dl7s36ygcd"; depends=[spatstat spatstat_explore spatstat_geom spatstat_model spatstat_random]; }; + ech = derive2 { name="ech"; version="0.1.3"; sha256="092djklyw9j5cjbkndb1jby2mn896y93yrysrg704dfcjd04yv2g"; depends=[assertthat curl dplyr fs geouy glue haven janitor labelled laeken rlang srvyr statar stringr survey tidyr]; }; echarts4r = derive2 { name="echarts4r"; version="0.4.4"; sha256="1xwr6282mnbg4hmljfanvdkya3hk8hix4g1pzw69w8x715p2b142"; depends=[broom corrplot countrycode dplyr htmltools htmlwidgets jsonlite purrr rstudioapi scales shiny]; }; - echarty = derive2 { name="echarty"; version="1.5.0"; sha256="0ipnci76yn8gqa5jk51aprywd54933fgqf2mdp2zfwcwirgz1642"; depends=[data_tree dplyr htmltools htmlwidgets jsonlite shiny]; }; + echarty = derive2 { name="echarty"; version="1.5.4"; sha256="0zhcy5l0zhh92pg47w1vfw5fvscdaschz5qsz7spmdxhpax0min9"; depends=[data_tree dplyr htmlwidgets]; }; echelon = derive2 { name="echelon"; version="0.1.0"; sha256="0dw15igx8jwgfr1f7p5pspxjiqhqmfp7shdhq8g07f4bj76irzm4"; depends=[]; }; + echo = derive2 { name="echo"; version="0.1.0"; sha256="1m3dzdgkl6v9z0wv3ws1yn58zi6bxgdy3p6a5jmq2rwhb8wz1lr8"; depends=[]; }; echo_find = derive2 { name="echo.find"; version="4.0.1"; sha256="1nadqqpxgx2ck16nzjp5ajm6714452qzllg5cq1jpisv1yb31db2"; depends=[boot minpack_lm]; }; echogram = derive2 { name="echogram"; version="0.1.2"; sha256="0kir7x32fk3fc63kr3b2j0hfkmivs2pwrlxyjvdg7xqc59hjp3ma"; depends=[geosphere readHAC]; }; echoice2 = derive2 { name="echoice2"; version="0.2.3"; sha256="1rsa50xfg01a07qnjsba5awr8vi16acqgzxlaw4k03h48ya7q05x"; depends=[dplyr forcats ggplot2 magrittr purrr Rcpp RcppArmadillo rlang stringr tibble tidyr tidyselect]; }; - echor = derive2 { name="echor"; version="0.1.7"; sha256="0x2vy9r51cgk35wgzrfl74w82vlcsj5vpfz5n9zcbxxk62lqd4kn"; depends=[curl dplyr geojsonsf httr plyr progress purrr readr rlang tibble tidyr]; }; + echor = derive2 { name="echor"; version="0.1.8"; sha256="1x8yx4hhp8lwl3fs3sbnvza73dh3jnxzv6jkq3nm4q9ff7svmaja"; depends=[curl dplyr geojsonsf httr plyr progress purrr readr rlang tibble tidyr]; }; ecic = derive2 { name="ecic"; version="0.0.3"; sha256="1b8jwxmbqs3hzjf1iy1f74way8ymi1lac38jd8zvc2np39szq2i8"; depends=[furrr future ggplot2 patchwork progress progressr]; }; ecipex = derive2 { name="ecipex"; version="1.1"; sha256="16iyi6n0pnyfmy47b0ranjbh3spvq8cgkmcamzhgjfj7qn0ix184"; depends=[CHNOSZ]; }; eclust = derive2 { name="eclust"; version="0.1.0"; sha256="01x327w02m357lngmgv3drni2s67sass25xk9vni1z434n8i4428"; depends=[caret data_table dynamicTreeCut magrittr pacman pander stringr WGCNA]; }; @@ -8801,11 +8911,11 @@ in with self; { ectotemp = derive2 { name="ectotemp"; version="0.2.0"; sha256="172rij0mmk7dd10lpbsxm4yy7072nz1fh7jfiyqmagzs5hwa31jv"; depends=[dplyr psych]; }; ed50 = derive2 { name="ed50"; version="0.1.1"; sha256="058p1750ba5hp4rczi26grgwjia2ny1880v1vfp6wxad13r459pq"; depends=[boot]; }; ed50simulation = derive2 { name="ed50simulation"; version="0.1.1"; sha256="00fknpssrpin8bpjhf2lsjx3lbpinrmqa6jzmgy3nslkc51x0939"; depends=[boot]; }; - eda4treeR = derive2 { name="eda4treeR"; version="0.3.0"; sha256="1shhajd9m9cxj9hdz34bnbs6sx20si37wh6ljw0wx5yrc9m7z9ib"; depends=[dae dplyr emmeans ggplot2 lme4 magrittr pbkrtest tidyverse]; }; + eda4treeR = derive2 { name="eda4treeR"; version="0.6.0"; sha256="0dah3pamlkc6iqskj0cp645l9hrinsmh678adxprsw0yp30727ab"; depends=[car dae dplyr emmeans ggplot2 lmerTest magrittr predictmeans supernova]; }; edbuildmapr = derive2 { name="edbuildmapr"; version="0.3.1"; sha256="0hc5vfpilqxva88dzgp57j9cgsq64r75vhm3hhl8lhi2wwapwk1d"; depends=[dplyr magrittr sf spdep stringr tibble tidyselect tmap]; }; edcpR = derive2 { name="edcpR"; version="1.0.1"; sha256="02d33cd9pkcjrbl9qipcjzkhrc68j7bybg1hpnsngiz4wmf3bfik"; depends=[]; }; eddington = derive2 { name="eddington"; version="2.1.1"; sha256="0v88v2xmvirnj661jsg2qh7n8afaw71mqks9csnmmz3c16agp7b6"; depends=[Rcpp]; }; - edeaR = derive2 { name="edeaR"; version="0.9.3"; sha256="0piy046q4vzyi3dbkga9cfh8jxl0anrvj4klc1a4y4n8hxsddyya"; depends=[bupaR cli data_table dplyr ggplot2 ggthemes glue hms lifecycle lubridate miniUI purrr rlang shiny shinyTime stringr tibble tidyr zoo]; }; + edeaR = derive2 { name="edeaR"; version="0.9.4"; sha256="120x95a5s51rvpr6kybgs875rbghqqmsrzdpq3jr1007yaxpl710"; depends=[bupaR cli data_table dplyr ggplot2 ggthemes glue hms lifecycle lubridate miniUI purrr rlang shiny shinyTime stringr tibble tidyr zoo]; }; edecob = derive2 { name="edecob"; version="1.2.2"; sha256="1k9790xamyw8ksfgvd8gka1f5mghfma6akdj7bqmlqv3yrlpgbxr"; depends=[ggplot2 rlang]; }; edf = derive2 { name="edf"; version="1.0.0"; sha256="14ikm6j0ndxrk7c7lh5mbd2aci46d4j9a30mvcgnxy3kq6046a7b"; depends=[]; }; edfReader = derive2 { name="edfReader"; version="1.2.1"; sha256="076far4fhd6rpa6fwffad4cgchjvar135yblvlrm33s9pd5bf0hn"; depends=[]; }; @@ -8829,7 +8939,7 @@ in with self; { educineq = derive2 { name="educineq"; version="0.1.0"; sha256="0qd6kvcy280glv3q6lcrawmnsfvp90as95chgi3hav0yj2dpakn6"; depends=[flexsurv ineq]; }; edwards97 = derive2 { name="edwards97"; version="0.1.1"; sha256="05g90mjxjvw9yqsp9gk50ywi7hdfwn3bgsyxpfkwkrjx9sdq5l0z"; depends=[broom cli glue rlang tibble withr]; }; eechidna = derive2 { name="eechidna"; version="1.4.1"; sha256="1p8vj371i7zglw7898akzj4hd5j7zk35is91jylxalldjab88v9c"; depends=[colourpicker dplyr ggplot2 ggthemes magrittr plotly purrr rgdal rgeos shiny sp stringi tibble tidyr tidyselect]; }; - eefAnalytics = derive2 { name="eefAnalytics"; version="1.1.0"; sha256="0849zsryrawwlzplxx6zymi6qnidv8w7vk7an8b9p4k3whqhyx42"; depends=[ggplot2 lme4 mvtnorm rstanarm]; }; + eefAnalytics = derive2 { name="eefAnalytics"; version="1.1.1"; sha256="1mgbdsmbv5s87b2334rf057di4l36qmr1kw12qvmb8yz1pqrsx4w"; depends=[ggplot2 lme4 mvtnorm rstanarm]; }; eegkit = derive2 { name="eegkit"; version="1.0-4"; sha256="1r1lack4ps9hwqq56rq37431rcxf3x79zgvda6vrmh4s0ziy6v4x"; depends=[bigsplines eegkitdata ica rgl signal]; }; eegkitdata = derive2 { name="eegkitdata"; version="1.1"; sha256="1pyxcpgkqqbzr9wbsqcxjnx6y4sxc69q7gvh3092jnnhs82kbqrc"; depends=[]; }; eel = derive2 { name="eel"; version="1.1"; sha256="0cv6dhw57yy140g73z94g9x1s42fpyfliv9cm2z1alm7xwap1l0x"; depends=[emplik rootSolve]; }; @@ -8858,11 +8968,10 @@ in with self; { ehelp = derive2 { name="ehelp"; version="1.2.1"; sha256="1kqd6mzzcf2b0hslpm2zvxyi3i4vhzxsmvdmfqgrs6703n1dx62g"; depends=[]; }; ei = derive2 { name="ei"; version="1.3-3"; sha256="0i8pvpal23zwsqldhmm3iis4vw9s08mlydpshaig2dsd9549gn11"; depends=[cubature eiPack ellipse foreach MASS mnormt msm mvtnorm plotrix sp tmvtnorm ucminf]; }; ei_Datasets = derive2 { name="ei.Datasets"; version="0.0.1-3"; sha256="1ii9dnjxbjvzp0ihg499fvwqzgdwdcp2xxnqfqz319d805hajcpr"; depends=[tibble]; }; - eiCompare = derive2 { name="eiCompare"; version="3.0.1"; sha256="0302czk1g1cdnp8jwwrim1y2iw0c0vv3cg7qg5n8dyrqzh4jqvyl"; depends=[bayestestR censusxy coda data_table doParallel doSNOW dplyr ei eiPack foreach ggplot2 leaflet magrittr mcmcse overlapping purrr rlang sf stringr tidyr tidyselect wru]; }; eiExpand = derive2 { name="eiExpand"; version="1.0.5"; sha256="1x30np4liy33mkb31040b2mk3yqajp4v0b2n32akm07f8sn3zrxh"; depends=[dplyr ggmap ggplot2 magrittr rlang sf stringr tidyr tidyselect viridis]; }; eiPack = derive2 { name="eiPack"; version="0.2-2"; sha256="1jb7nxk71cyvrmapzwz4fgjv7ca5m17i22acyhx27krl168ss0r2"; depends=[coda MASS msm]; }; eia = derive2 { name="eia"; version="0.3.7"; sha256="1af9m5qrchxcrhyasx0hkrzjr6z4vixxmq4q9q33bkscy263q9fg"; depends=[dplyr httr jsonlite lubridate magrittr memoise purrr readxl tibble]; }; - eicm = derive2 { name="eicm"; version="1.0.1"; sha256="0gil445xrsd1hhi5l6i3mn7kf4mbfwwhfkgmyja62dj68m4akwfz"; depends=[doSNOW foreach GA iterators optimParallel pso snow ucminf]; }; + eicm = derive2 { name="eicm"; version="1.0.3"; sha256="0439ngwr8m7inljn8303g2a9v3izw81jz1jqxgbp6xdnvlwwpsyx"; depends=[doSNOW foreach GA iterators optimParallel pso snow ucminf]; }; eigenmodel = derive2 { name="eigenmodel"; version="1.11"; sha256="1l3n0z736xf3x6cyxzmmq1jb2glxi2b75z7v39y4471knh6nbb4d"; depends=[]; }; eikosograms = derive2 { name="eikosograms"; version="0.1.1"; sha256="13s5wqcc8iwnhn3msrh9dfrvq9bwlby93p9v5wcnrm8m9iskax1s"; depends=[plyr]; }; eimpute = derive2 { name="eimpute"; version="0.2.2"; sha256="11bjvzmf252m3440z5wlsx92ybay5g76j2af0xbcybhqz7wpkk0l"; depends=[Rcpp RcppEigen]; }; @@ -8873,7 +8982,7 @@ in with self; { eive = derive2 { name="eive"; version="3.1.1"; sha256="0bwq95xfpy6m0zav9315vb3npay8irjlni0jc9aciz4jyz08if5f"; depends=[Rcpp]; }; eivtools = derive2 { name="eivtools"; version="0.1-8"; sha256="0ynmrql6dv10m7cwba5mzwlbvp6ab53nzqqvk3ihwyiqzmnnmpk4"; depends=[R2jags]; }; eixport = derive2 { name="eixport"; version="0.5.4"; sha256="0q6djpp6x0hzzk2sh36rfgzch3n6v4af9knvwv0fnlh72n2cj0b8"; depends=[cptcity data_table ncdf4 raster rgdal sf sp]; }; - eks = derive2 { name="eks"; version="1.0.3"; sha256="04yq4l2zkgczzjz63lkix75sfh5z5w4h405sj0j4wwnk9apc41wz"; depends=[dplyr ggplot2 isoband ks mapsf sf]; }; + eks = derive2 { name="eks"; version="1.0.4"; sha256="14nyd2ipjy5kvcp3001ld7dv2k46paxg20w7dnq17sg8wy8iy4rd"; depends=[dplyr ggplot2 isoband ks mapsf sf]; }; elaborator = derive2 { name="elaborator"; version="1.1"; sha256="1kq3qqqywpzrk1ichsljvfijhsybmj7s0scmswmwi2crqi67gzp8"; depends=[bsplus dendextend dplyr forcats haven purrr RColorBrewer reshape2 rlang seriation shape shiny shinydashboard shinyWidgets tidyr]; }; elasdics = derive2 { name="elasdics"; version="1.1.1"; sha256="1zpwkch4h463d1ad681iid668909w74xb0wyfjqshdvznb4pxp5i"; depends=[numDeriv]; }; elasso = derive2 { name="elasso"; version="1.1"; sha256="0nz3vw803dvk4s45zc9swyrkjwna94z84dn4vfj3j17h74a0cij2"; depends=[glmnet SiZer]; }; @@ -8906,11 +9015,12 @@ in with self; { elsa = derive2 { name="elsa"; version="1.1-28"; sha256="01sj2a4yhv5m6qj6ih26zw4yzd8s27lll7yp0yysjjrwz79a0fbq"; depends=[raster sp]; }; eltr = derive2 { name="eltr"; version="0.1.0"; sha256="0f4sy2hhsbghasl5xcnqlgxqhb503pl73c5vdkgpcm73smrqbpbv"; depends=[data_table]; }; em = derive2 { name="em"; version="1.0.0"; sha256="16xmksz1zdr61gxycsbia28kj16nrrcdvjcdd3nk6n6zjiy3ca3v"; depends=[dplyr magrittr mclust nnet numDeriv plm Rcpp RcppArmadillo survival]; }; + emBayes = derive2 { name="emBayes"; version="0.1.0"; sha256="1x9afzqv2xd85h8xgjwjrskjzd4igi2kzgg3c4d8wvmfrbavc8nm"; depends=[glmnet Rcpp RcppArmadillo]; }; emIRT = derive2 { name="emIRT"; version="0.0.13"; sha256="1z6yd9m6vggbp42qms2sg0rbxjpg15x9m8gkdz1p3q4aqrc2ncj0"; depends=[pscl Rcpp RcppArmadillo]; }; emailjsr = derive2 { name="emailjsr"; version="0.0.2"; sha256="1pxqw0r95pgpnvhmyw46py6bnchswb9wcyl42lsg5ccz74dynmh0"; depends=[httr shiny shiny_i18n shinybrowser]; }; + emailvalidation = derive2 { name="emailvalidation"; version="0.1.0"; sha256="1k2i2rnlqzgi7kn2knll86bax4pms68jddrycaqv6pkql8fja93a"; depends=[httr jsonlite]; }; emayili = derive2 { name="emayili"; version="0.7.15"; sha256="0c8vs2rh1c4rdvs8w42mk7yhngyc6dfrl12zi56wn5sq9320258l"; depends=[base64enc commonmark curl digest dplyr glue htmltools httr logger magrittr mime purrr rmarkdown rvest stringi stringr tidyr urltools xfun xml2]; }; - emba = derive2 { name="emba"; version="0.1.8"; sha256="1bzp1cplr977w87bm0pvabvgai91a3j51pfjn4lc1ncjbr2v6wl0"; depends=[Ckmeans_1d_dp dplyr igraph purrr readr rje stringr tibble tidyr tidyselect usefun visNetwork]; }; - embed = derive2 { name="embed"; version="1.0.0"; sha256="1yvw24yi4j1xlbm6w1g49mcp6wqnn69191sys1fr8wsvrag79gfn"; depends=[dplyr generics glue keras lifecycle purrr recipes rlang rsample tensorflow tibble tidyr uwot withr]; }; + embed = derive2 { name="embed"; version="1.1.0"; sha256="1s526p48l3vvjnlb648icz05vhi7y6lngcbqlnmazxym1w2dc5zm"; depends=[dplyr generics glue keras lifecycle purrr recipes rlang rsample tensorflow tibble tidyr uwot withr]; }; embryogrowth = derive2 { name="embryogrowth"; version="8.7"; sha256="1fayl1wxpw9903psrjichrbf6rx38d7shnsjpxdwljw67g6pr5g7"; depends=[deSolve HelpersMG numDeriv optimx]; }; emdbook = derive2 { name="emdbook"; version="1.3.12"; sha256="0ls3zxxlwmdv7zn1v9i1y9zc2sn0hbgmyjvsj7zn3ajsw7wwlih6"; depends=[bbmle coda lattice MASS plyr]; }; emdi = derive2 { name="emdi"; version="2.1.3"; sha256="0s190p6zhsj2yc1xy1px5sk8aqn6q8b26g7zsnpa9rvih9h2667r"; depends=[boot formula_tools ggplot2 gridExtra HLMdiag MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 saeRobust spdep stringr]; }; @@ -8918,8 +9028,8 @@ in with self; { emg = derive2 { name="emg"; version="1.0.9"; sha256="04sm05xnjns7wcvpk35ywkxy6g0mm84r060mkmzh64wq58c2q06l"; depends=[moments]; }; emhawkes = derive2 { name="emhawkes"; version="0.9.7"; sha256="0zhy1y80m548y9nbbjb2h795qky2637mxlqb548bakn7ps847qps"; depends=[maxLik]; }; emld = derive2 { name="emld"; version="0.5.1"; sha256="0cvnfvzskvpcqzs6fwrpjcqrc6yrfciliy9jj0c9h4iyag0g0b9b"; depends=[jsonld jsonlite xml2 yaml]; }; - emmeans = derive2 { name="emmeans"; version="1.8.5"; sha256="0594k2dfkdszkfmhprnhlq7569kkk3291w1slqd8qbd4nlav922w"; depends=[estimability mvtnorm numDeriv]; }; - emoa = derive2 { name="emoa"; version="0.5-0.1"; sha256="0rkr4d4fyqxmsrlbzar27z97qkw4cl1dkvfnhbdwpgg9fi1cixmz"; depends=[]; }; + emmeans = derive2 { name="emmeans"; version="1.8.6"; sha256="11gma8sz3bxy59flyzxqh400a4pm1cg6maaqvxxbms77svhb8vd4"; depends=[estimability mvtnorm numDeriv]; }; + emoa = derive2 { name="emoa"; version="0.5-0.2"; sha256="0fr4ia3hkv8c7wkl64a51s6ynldppc812ynwldvbwy25dhlbvs6r"; depends=[]; }; emoji = derive2 { name="emoji"; version="15.0"; sha256="1xscypzz17a7nrajnl7isy2nrm9cyr97l0mi9vp0daqvzgyfajba"; depends=[glue stringr tibble]; }; emojifont = derive2 { name="emojifont"; version="0.5.5"; sha256="1hhrwilv36hd9gs1kcl2zsi6519md0h9aixjrm6lfclxvz8r6k1i"; depends=[ggplot2 proto showtext sysfonts]; }; emon = derive2 { name="emon"; version="1.3.2"; sha256="19khjjpyxvzhzihqq15w02l5v5ryyvxlklz1ch2gkmqcpnvyga32"; depends=[MASS mgcv]; }; @@ -8930,7 +9040,7 @@ in with self; { emplikAUC = derive2 { name="emplikAUC"; version="0.3"; sha256="0ifh661xknqin0k9vs92p00c4n6npkwn5cxyj970cj8l689yndrr"; depends=[emplik2 rootSolve]; }; ems = derive2 { name="ems"; version="1.3.11"; sha256="0xg4c6yhrnq5pfz94i1ys1bdqfz12h0wcs86fz4nm4pqfdbh41cc"; depends=[boot rms survival]; }; emstreeR = derive2 { name="emstreeR"; version="3.0.0"; sha256="1rfgw9inkxg81ky31r51a8fc5nvwalrjp2nkx4p24l5k622fwmjb"; depends=[BBmisc ggplot2 mlpack scatterplot3d]; }; - emuR = derive2 { name="emuR"; version="2.3.0"; sha256="1i133lnjn5yjy26r25xfhny6410lp8jj23jpn54znbyc560w2c9r"; depends=[base64enc cli DBI dplyr httpuv httr jsonlite mime purrr readr rlang RSQLite rstudioapi shiny stringr tibble tidyr uuid V8 wrassp]; }; + emuR = derive2 { name="emuR"; version="2.4.0"; sha256="1vwfzs02ga07z1risj4kc0iqqcwkx3wym996lp8kdipfclr4dr8i"; depends=[base64enc cli DBI dplyr httpuv httr jsonlite mime purrr readr rlang RSQLite rstudioapi shiny stringr tibble tidyr uuid V8 wrassp]; }; emulator = derive2 { name="emulator"; version="1.2-21"; sha256="0iikf6yinkqcgdnxx6v5kzfllhq3ppl75ym48vlcbnvkwv0v4l4v"; depends=[mvtnorm]; }; enc = derive2 { name="enc"; version="0.2.2"; sha256="16x8cckw0ah2yfczvv4j1jy4f8m23fkac38fz068964sv4l8z645"; depends=[]; }; encode = derive2 { name="encode"; version="0.3.6"; sha256="04zwclmqasbx54m77wqfr9jg4axhkkqnykaxv3if8lnr46fl3zyc"; depends=[]; }; @@ -8947,11 +9057,11 @@ in with self; { enetLTS = derive2 { name="enetLTS"; version="1.1.0"; sha256="1lah9ai9skshz0rq3r1smvy69j443m22h1dihl42gy2568998q4v"; depends=[cvTools ggplot2 glmnet reshape robustbase robustHD]; }; english = derive2 { name="english"; version="1.2-6"; sha256="1g3nmy5p8wj3ix1vp1qmkmy3dyqisrw0md8cjrx4klqkp0wqlms9"; depends=[]; }; engsoccerdata = derive2 { name="engsoccerdata"; version="0.1.5"; sha256="06fdgjgnk4lwshrkd0jad411x5nz9sxlri9fdhxrf2dr2hik4l8q"; depends=[dplyr magrittr tidyr]; }; - enmSdmX = derive2 { name="enmSdmX"; version="1.0.3"; sha256="0rwcv38md8w109sihc07441bvm99y6m60rff6jracsraymakb3yc"; depends=[boot dismo doParallel DT foreach gbm ks maxnet mgcv MuMIn omnibus randomForest rJava scales sf shiny terra]; }; + enmSdmX = derive2 { name="enmSdmX"; version="1.0.6"; sha256="0s63x1i7l2c14a8wd7g0jffdr2d39jfkfm9mg1a3xflh88h596js"; depends=[boot dismo doParallel DT foreach gbm ks maxnet mgcv MuMIn omnibus randomForest rJava scales sf shiny terra]; }; enpls = derive2 { name="enpls"; version="6.1"; sha256="12088v9xnj5b3dlakqz1hbzxz4mdai7xi7s2fpx8lj3y3lx7znmb"; depends=[doParallel foreach ggplot2 plotly pls reshape2 spls]; }; - enrichR = derive2 { name="enrichR"; version="3.1"; sha256="0ad7jp398prvmm2fym07268qhv40mg67dx55ml4ayqkwxwffr1i9"; depends=[curl ggplot2 httr rjson]; }; + enrichR = derive2 { name="enrichR"; version="3.2"; sha256="1g97q6vqwvb2l02y61343sblarqi433gjl3qmlyxjxq2lnjrnak1"; depends=[curl ggplot2 httr rjson WriteXLS]; }; enrichwith = derive2 { name="enrichwith"; version="0.3.1"; sha256="05fhx323ani86wdxbjp8dgw4d1iq4kr1887646w072a6iq93bwhm"; depends=[]; }; - ensModelVis = derive2 { name="ensModelVis"; version="0.1.0"; sha256="06nhk616h32225p65ms4k9ia5qwd7kngpa4z6hxzn9nzmiirma60"; depends=[dplyr forcats ggplot2 magrittr rlang tidyr]; }; + ensemblQueryR = derive2 { name="ensemblQueryR"; version="0.1.0"; sha256="0yz7c8lvy9hivm60brx72iph36jrx5d11i9fbdhbl2l3gi4w0fbd"; depends=[dplyr httr jsonlite magrittr purrr rlang tibble tidyr vroom xml2]; }; ensembleBMA = derive2 { name="ensembleBMA"; version="5.1.8"; sha256="1bb2f7pkwq4dza8fkag3802yflzcsfma4cnwhfw1qgg227sfy8d9"; depends=[chron]; }; ensembleMOS = derive2 { name="ensembleMOS"; version="0.8.2"; sha256="16d8030zfdwifqrh45vz3gf5n0bix0mhsmsnydgjq1fghdklcmyx"; depends=[chron ensembleBMA evd]; }; ensembleR = derive2 { name="ensembleR"; version="0.1.0"; sha256="0xvq1jlsp7gsk46i847nfvadxwlh09gi2rgwss2wf2xmh1855ray"; depends=[caret]; }; @@ -8974,7 +9084,6 @@ in with self; { envoutliers = derive2 { name="envoutliers"; version="1.1.0"; sha256="1wgrrkkpkmf300qb56mq6nxigwnpq551sjxlk05lk3ckawx66srf"; depends=[car changepoint ecp ismev lokern MASS robustbase]; }; envstat = derive2 { name="envstat"; version="0.0.3"; sha256="07y4bprb9mi37d8pg6xr1x4rkgjza2iq5hpr8a1iv584sgbjl4ah"; depends=[cli httr2 rstudioapi yaml]; }; eoR = derive2 { name="eoR"; version="0.4.0"; sha256="0vn4s4af94n9h6x7z14qwpz94rgsd5m3mv55wva7x3h99ryhm83s"; depends=[data_table]; }; - eoa3 = derive2 { name="eoa3"; version="1.0"; sha256="099irdxripakk6sjy5gdwvd1nv70yad0q4cdm9w3q4q0ks5gss5w"; depends=[actuar GenEst MASS rjags survival VGAM]; }; eoffice = derive2 { name="eoffice"; version="0.2.2"; sha256="0nxyllragxn5bq28x37vkx16vi4y9af5nly1pslqrvvarl21ics4"; depends=[broom devEMF dplyr flextable ggplot2 ggplotify htmlwidgets magick magrittr officer plotly R_devices rvg]; }; epade = derive2 { name="epade"; version="0.5.1"; sha256="05g41lslw77v8r2914vpf92348hcyfx7xqbbwknfhl1xld9rk2iz"; depends=[Hmisc plotrix survival]; }; epandist = derive2 { name="epandist"; version="1.1.1"; sha256="0hxgbjns5bk82rgcmykxifnnxcnqdzmkimkkmpdif64zr5g3gjdg"; depends=[]; }; @@ -8982,16 +9091,16 @@ in with self; { epanetReader = derive2 { name="epanetReader"; version="0.7.3"; sha256="05pwa6z03qsjwr9pxpbxycsd21p7mf5j5ajyg4yaas5g100s1k8c"; depends=[]; }; epca = derive2 { name="epca"; version="1.0.1"; sha256="1z2x1h39dwi2kfb2rbip2knah9mycxvf9cw4d51vimka2ksgqwv4"; depends=[clue GPArotation irlba Matrix RSpectra tidyverse]; }; epcc = derive2 { name="epcc"; version="1.4.7"; sha256="0j4cb17gvwsaacmhvm8qp5chr384kl7gj6089gjrc2hqi6kjr0rx"; depends=[cowplot deSolve formattable ggplot2 httr nls2 proto raster readxl rgdal rlang sp]; }; - eph = derive2 { name="eph"; version="0.5.1"; sha256="12j8qmscsz381i9fs3slva2wl7pk7zxa38shaj4m595lswsixvi8"; depends=[assertthat attempt curl dplyr expss glue htmltools janitor leaflet magrittr purrr readr readxl rlang rvest stringr tibble tidyr tidyverse xml2 zoo]; }; + eph = derive2 { name="eph"; version="0.6.0"; sha256="1n4inycd14iy2g4ljs575kc73wpwpsnlqihk73m6m0lk84n0by2c"; depends=[assertthat attempt cli curl dplyr expss glue htmltools janitor leaflet magrittr purrr readxl rlang rvest stringr tibble tidyr xml2 zoo]; }; epiDisplay = derive2 { name="epiDisplay"; version="3.5.0.2"; sha256="0430mwnaa0qamdyvmwkh37ic0kp4hq8mr5nxkc97mhhl7djw0y92"; depends=[foreign MASS nnet survival]; }; - epiR = derive2 { name="epiR"; version="2.0.60"; sha256="0bbg8iidb7qxbas90q8g4wfsrysrkxymafz6xl9q03dmp9y1cfi7"; depends=[BiasedUrn flextable lubridate officer pander sf survival zoo]; }; + epiR = derive2 { name="epiR"; version="2.0.61"; sha256="1fnrr3g8zspl7c7d4ssyd20l2wcr3dy29apzplkssnrhp740s4a8"; depends=[BiasedUrn flextable lubridate officer pander sf survival zoo]; }; epibasix = derive2 { name="epibasix"; version="1.5"; sha256="0ivr51x37cbdryli9b4p4iq9v2c90zwmywrwdmg7ryq5vprvvbp0"; depends=[]; }; epicasting = derive2 { name="epicasting"; version="0.1.0"; sha256="191kxjrr8h44i7a7dpxziqhbcnbmhgcc5b7ddn9cnvvjqmbwmvl2"; depends=[forecast Metrics wavelets]; }; epicontacts = derive2 { name="epicontacts"; version="1.1.3"; sha256="0y97l288ncj0svk1gnxjr4q58rvhbn6wblm7jbhff4n4544yd4f7"; depends=[colorspace dplyr igraph threejs visNetwork]; }; epidata = derive2 { name="epidata"; version="0.4.0"; sha256="0v3s1vrf2iqh03rkkwrlz6mhpbsbjxkayrqdx04vrnja4i9ljshk"; depends=[dplyr httr jsonlite purrr readr rvest stringi tidyr tinytest xml2]; }; epidm = derive2 { name="epidm"; version="1.0.4"; sha256="0ncjfhq45gs1w0kpkpdwfs43iccl6pq8yrc2999g3r5dsiw06lyq"; depends=[data_table DBI odbc phonics purrr readr stringi stringr]; }; epifitter = derive2 { name="epifitter"; version="0.3.0"; sha256="104hl3b3951psi023hv95486ygcv9ilmqkzw96yygym7rhkaww9m"; depends=[DescTools deSolve dplyr ggplot2 knitr magrittr minpack_lm tibble tidyr]; }; - epiflows = derive2 { name="epiflows"; version="0.2.0"; sha256="09ri1p73ih0i08irc06ff169hi5vcl8bdi63b056kzxgmv17yqkp"; depends=[epicontacts geosphere ggmap ggplot2 htmltools htmlwidgets leaflet sp tibble visNetwork]; }; + epiflows = derive2 { name="epiflows"; version="0.2.1"; sha256="1d7j2w9jjscny0ax33k1wy0hcr2pn6ck491vfm327lx4jpld8pfd"; depends=[epicontacts geosphere ggmap ggplot2 htmltools leaflet sp tibble visNetwork]; }; epigraphdb = derive2 { name="epigraphdb"; version="0.2.3"; sha256="11ja2r024a4sfk6xjhwn2mj4fz2msf6jx85w3cxr2hvp9sl3zgc9"; depends=[glue httr jsonlite magrittr purrr tibble]; }; epikit = derive2 { name="epikit"; version="0.1.5"; sha256="06hzs5bzv53qyiqa197qk5gykg1llxb1dh9f8xiald8wk5xxq0z6"; depends=[binom dplyr forcats ggplot2 glue rlang scales sf tibble tidyr tidyselect]; }; epimdr = derive2 { name="epimdr"; version="0.6-5"; sha256="1nxdlz7gl9vrha9iw92y0s9dmm101gkz0rsqxqg1rdxanr6hs6sh"; depends=[deSolve polspline shiny]; }; @@ -9000,15 +9109,14 @@ in with self; { epinetr = derive2 { name="epinetr"; version="0.96"; sha256="0jg8pwbxlgrk7mqawsrifk724pi5qn0amh6x2fq54a0hmqdpdjns"; depends=[GA ggplot2 igraph Rcpp RcppAlgos reshape2 vcfR]; }; epiomics = derive2 { name="epiomics"; version="1.0.0"; sha256="06rk2ccnzanxjy0y1lrjya8w2mrnkki12s2mcp4pqn42a664clkx"; depends=[data_table ggplot2 ggrepel lme4 lmerTest qgcomp survival]; }; episcan = derive2 { name="episcan"; version="0.0.1"; sha256="02687f8gpc2czn19lapvazd6mnm8902ay0lhgi3wdrzfhir42m4r"; depends=[]; }; - episensr = derive2 { name="episensr"; version="1.1.0"; sha256="0670h2x8mcd4g7m17k0zascq5yb3llsvpp9qwzghiha0f9ai8xw0"; depends=[actuar boot dagitty ggdag ggplot2 magrittr trapezoid triangle]; }; + episensr = derive2 { name="episensr"; version="1.2.0"; sha256="0nnl4sz7gmi09ik5g4qrh8ipv6rlskvn4sqdqj8nn47wxli52wdi"; depends=[actuar boot dagitty ggdag ggplot2 magrittr trapezoid triangle]; }; epistasis = derive2 { name="epistasis"; version="0.0.1-1"; sha256="0dfh26bs72i01hpxpgpgyiwpmg9mjpib8zynhc5ssxa0skm518wz"; depends=[glasso igraph Matrix tmvtnorm]; }; epitab = derive2 { name="epitab"; version="0.2.2"; sha256="0yi65bblsikwsa9i7wys1mqf6pp6j01kyc8xkyrhs5n62y1k68nc"; depends=[kableExtra knitr MASS survival xml2]; }; epitools = derive2 { name="epitools"; version="0.5-10.1"; sha256="0jqn3pas4lsans50jwakmvpyc7m7x0kxq6dzyckd3vgww56qa65l"; depends=[]; }; - epitopR = derive2 { name="epitopR"; version="0.1.2"; sha256="0bqj62jl48pql7dbmq96fgs0pza3krycd9i6fj0sjz7yxg4i46q6"; depends=[Biostrings dplyr fs here httr janitor purrr readr seqinr stringr tibble tidyverse]; }; epitopeR = derive2 { name="epitopeR"; version="1.0.0"; sha256="0zp23cm43j9mm1fvz65y3xgjy0bm2s5h02y046zx2akx24sh3fjh"; depends=[Biostrings dplyr fs httr janitor purrr readr rlang seqinr stringr tibble tidyverse]; }; epitrix = derive2 { name="epitrix"; version="0.4.0"; sha256="08cz2p9xxa966a2v8kay00l3pmgfgmwzlh5pnx04s19rmar13z02"; depends=[distcrete dplyr purrr rlang sodium stringi tidyr]; }; epitweetr = derive2 { name="epitweetr"; version="2.2.13"; sha256="0vv4y1c8nfcdv2hmv6vvi5jh6ykrbvna2p2gwpcl9q4j7b4wp9jc"; depends=[bit64 crul curl dplyr DT emayili future ggplot2 htmltools httpuv httr janitor jsonlite keyring knitr lifecycle magrittr openxlsx plotly plyr processx readxl rgdal rlang rmarkdown rnaturalearthdata rtweet shiny sp stringr tibble tidytext tidyverse tokenizers xml2 xtable]; }; - eplusr = derive2 { name="eplusr"; version="0.15.3"; sha256="04qbvawxzily2cd76lahi3nba49c2j4skjvqk8xy2rin7p0w6fxs"; depends=[callr checkmate cli crayon data_table hms lubridate processx progress R6 RSQLite stringi units]; }; + eplusr = derive2 { name="eplusr"; version="0.16.0"; sha256="1a0m6qbnlv2xbqc02frgqaksaidk7b1vzx00d2jlxyiq3j96gw18"; depends=[callr checkmate cli data_table lubridate processx R6 RSQLite stringi units]; }; eply = derive2 { name="eply"; version="0.1.2"; sha256="0al44pvqf6ls3dh129vlv3g56hk1nbql09rj0qsb04d9kaz9anrp"; depends=[magrittr]; }; epm = derive2 { name="epm"; version="1.1.1"; sha256="1n4q0gnwq4jrsy8gir1x5m0ijlk2nwinlavf05g947l1yx1kq06b"; depends=[ape pbapply Rcpp RcppProgress sf terra viridisLite]; }; epoc = derive2 { name="epoc"; version="0.2.6-1.1"; sha256="1qlj4cl7mh5k52v2ippfs3cish5iadnix5w46p25hjqiriksclna"; depends=[elasticnet irr lassoshooting Matrix survival]; }; @@ -9027,7 +9135,6 @@ in with self; { equate = derive2 { name="equate"; version="2.0.8"; sha256="0yjgnhn1hj5rs68qn51caia4zb78hh7vipm4411ng28cn9cxzdm4"; depends=[]; }; equateIRT = derive2 { name="equateIRT"; version="2.3.0"; sha256="18rs6n4kgbiikkljppnacd1zkv2wp8xc8ibk9xslrhshxwwr0576"; depends=[mirt statmod]; }; equateMultiple = derive2 { name="equateMultiple"; version="0.1.1"; sha256="0daj3dnxh383kk86bxwgmnxg1pfx996080k59nyl5ryb8wcbqc85"; depends=[equateIRT numDeriv Rcpp RcppArmadillo statmod]; }; - equatiomatic = derive2 { name="equatiomatic"; version="0.3.1"; sha256="0gy1wy10zc7h7h1s0hwd545iv4af5x2g8pqsgzyryydd6426g2gj"; depends=[broom broom_mixed knitr shiny]; }; equil2 = derive2 { name="equil2"; version="1.0.0"; sha256="1dmd8ssgv0a0ccmk906vbx61qqdq4h033a8173i7s8c58qfz8yhb"; depends=[units]; }; equivUMP = derive2 { name="equivUMP"; version="0.1.1"; sha256="05ihbr6dd9qv89ll90ynk4g3d3xy2w5q0m696djfa63f1x92c01w"; depends=[]; }; equivalence = derive2 { name="equivalence"; version="0.7.2"; sha256="170l5gnk0dkjkfsx7qyrw56ircwsjzz9cvhakgyrqh7bj5734i79"; depends=[boot lattice PairedData]; }; @@ -9037,7 +9144,8 @@ in with self; { ercv = derive2 { name="ercv"; version="1.0.1"; sha256="0rs4yhm9sjnqkrgqqy6b8wj9fgk910hxc8d7zi4qwql0v1gid27l"; depends=[]; }; erer = derive2 { name="erer"; version="3.1"; sha256="03pdq3p5c5f20959hgk5q2cx5x10bpgf0qg4z1nvsf31vc5ni77v"; depends=[lmtest systemfit tseries urca]; }; erfe = derive2 { name="erfe"; version="0.0.1"; sha256="1v6xca2zwdg494mdb97dwg2xlqsr51919plylnl04d8dgg5adhz9"; depends=[Matrix mvtnorm]; }; - ergm = derive2 { name="ergm"; version="4.4.0"; sha256="0wv12bbcd3hp8bsvhffsj5jj0pmz61gl00sn0vqdcwfxgz655c9d"; depends=[coda knitr lpSolveAPI magrittr MASS Matrix memoise network purrr Rdpack rlang rle robustbase statnet_common stringr tibble trust]; }; + ergMargins = derive2 { name="ergMargins"; version="0.1.3.1"; sha256="18axdfg7nf2dcbm2hbpjkx821nrg8c97jn5nny2110cja9vi0qgw"; depends=[btergm ergm Matrix network numDeriv]; }; + ergm = derive2 { name="ergm"; version="4.5.0"; sha256="0lb3gdjnphgi8y478l98zrjjlr99f35ia9m6cn6m2h5n6nywfwik"; depends=[coda knitr lpSolveAPI magrittr MASS Matrix memoise network purrr Rdpack rlang rle robustbase statnet_common stringr tibble trust]; }; ergm_count = derive2 { name="ergm.count"; version="4.1.1"; sha256="0cj9jdxxpkgvs658nxxndd9pbxb7l52vzhipkjiimd6q99hr6s24"; depends=[ergm network statnet_common]; }; ergm_ego = derive2 { name="ergm.ego"; version="1.0.1"; sha256="153xdry9y2wyqkq2hacy3gh4h6jwwyn0p0dakxmrrpfsa1my5h9f"; depends=[dplyr egor ergm network purrr RColorBrewer statnet_common survey tibble]; }; ergm_multi = derive2 { name="ergm.multi"; version="0.1.2"; sha256="1nvr7f4ilhf9f3kyahaxhzq6wr4c2vx3afl5p6za72v8g6cnqjq0"; depends=[ergm glue Matrix network purrr Rdpack rlang rle statnet_common tibble]; }; @@ -9058,8 +9166,8 @@ in with self; { esaps = derive2 { name="esaps"; version="0.2.2"; sha256="0yys40ki5dy62fds4kfwji6qzq5mbmvqps85maqgsimal7p7gx3n"; depends=[dplyr plyr readODS readxl tidyr]; }; esback = derive2 { name="esback"; version="0.3.0"; sha256="09k895028hqa62m8fhbg5b33ry0in6kbrw0lnphn0rgjhlifxp4z"; depends=[esreg]; }; esc = derive2 { name="esc"; version="0.5.1"; sha256="0gns7gz55p6pha05413r3hlvd7f2v1amxkg13d197mab1ypqic7q"; depends=[]; }; - escalation = derive2 { name="escalation"; version="0.1.4"; sha256="1iyjp20rzz3lrgn183jvjcf7vvmk66f3rgyv22s2ja4b98598ha4"; depends=[binom BOIN dfcrm DiagrammeR dplyr gtools magrittr purrr RColorBrewer stringr tibble tidyr tidyselect trialr viridis]; }; - eseis = derive2 { name="eseis"; version="0.6.0"; sha256="13sr7drqw8gzrhgz1anvnxpypr8m85sb2s8zhi074z4yhqxh9jw6"; depends=[caTools EMMAgeo extraDistr fftw IRISSeismic limSolve matrixStats minpack_lm multitaper raster Rcpp reticulate rgdal rmarkdown shiny shinyFiles signal sp XML]; }; + escalation = derive2 { name="escalation"; version="0.1.5"; sha256="0667zmyvgr5lmshgxf1j5yny0kkij6z8d7gj0jcsdl0cq8g8pjm4"; depends=[binom BOIN dfcrm DiagrammeR dplyr gtools magrittr purrr RColorBrewer stringr tibble tidyr tidyselect trialr viridis]; }; + eseis = derive2 { name="eseis"; version="0.7.2"; sha256="1x14nca5pwiv0rfm4x7471hp70xvbhsr2rnmdpfr4cndlhp83r83"; depends=[caTools colorspace extraDistr fftw IRISSeismic matrixStats minpack_lm multitaper Rcpp reticulate rmarkdown shiny signal terra XML]; }; eselect = derive2 { name="eselect"; version="1.1"; sha256="04918ping7rxb0n5fkllkcv332gwhqq2f1fqi5nrbx65k7lrjmfy"; depends=[CompAREdesign]; }; esemifar = derive2 { name="esemifar"; version="1.0.1"; sha256="1fj6hdz4kvign9whxclgriafqc8m1yibvwqprvyn861v31kmlc55"; depends=[fracdiff smoots]; }; eshrink = derive2 { name="eshrink"; version="0.1.2"; sha256="0min4j1dyd08i0fyn9a4iasjlhq08bn74bjz8vj1gq9l114v795k"; depends=[glmnet MASS]; }; @@ -9067,12 +9175,12 @@ in with self; { esmprep = derive2 { name="esmprep"; version="0.2.0"; sha256="076sm26mkkvig2g04k32z2dlp2h9gnqgzckhirl4pqm01siknl61"; depends=[lubridate]; }; espadon = derive2 { name="espadon"; version="1.3.2"; sha256="1zvl6lwwgndqavsf0sdkaavsyhl490iybbi1w3cwcpkc3g461v3c"; depends=[colorspace DT igraph js mathjaxr Matrix misc3d openxlsx progress qs Rcpp Rdpack rgl Rvcg shiny shinyWidgets sp]; }; esquisse = derive2 { name="esquisse"; version="1.1.2"; sha256="180kdcqf93rkfzmjlysi53646ypkqi1r383n8p9jmj6xh9aag8rl"; depends=[datamods ggplot2 htmltools jsonlite phosphoricons rlang rstudioapi scales shiny shinyWidgets]; }; - esreg = derive2 { name="esreg"; version="0.6.1"; sha256="19ng9hk1xxn8qi2i0qnn58rqrrkvsiri7i2wipjnld1s69z8i4hd"; depends=[Formula quantreg Rcpp RcppArmadillo]; }; + esreg = derive2 { name="esreg"; version="0.6.2"; sha256="1djyx8cc1pfza5n5ipg990jwwc1fjlsiz817iifwv9iw8g9vkda4"; depends=[Formula quantreg Rcpp RcppArmadillo]; }; ess = derive2 { name="ess"; version="1.1.2"; sha256="1cmw20nn39ssyqiyn50w0ws28mq4cd26yhzr7mv97haaqjjjkv5h"; depends=[igraph Rcpp]; }; essHist = derive2 { name="essHist"; version="1.2.2"; sha256="0rvlxfcl42h4pjqf37mx7bc4k21iwvnys6l5rf2jsl7yk1b9hmbn"; depends=[Rcpp]; }; essentials = derive2 { name="essentials"; version="0.1.0"; sha256="163wv4szfanbpiw5f6lhw1dnns5prql43iz27zgcp5z2rsxlb894"; depends=[]; }; essurvey = derive2 { name="essurvey"; version="1.0.8"; sha256="1b78am4vnyg3k2hjjkjyhnjgm6rsmjwvqys030qybkgfplsbgra3"; depends=[haven httr rvest tibble xml2]; }; - estadistica = derive2 { name="estadistica"; version="0.2.2"; sha256="05ad1wfy4682icprp7jgx09p8azjnk8wlxhpzjdkm6mz0ix7zqp5"; depends=[data_table dplyr forecast ggplot2 gridExtra knitr plotly rio shiny shinydashboard tidyr tidyverse]; }; + estadistica = derive2 { name="estadistica"; version="0.2.3"; sha256="1l5ngjqm301rr1amsqdkazf7dg7c8nd0pvwy0hrsjk0m630q1kc4"; depends=[data_table dplyr forecast ggplot2 gridExtra knitr plotly rio shiny shinydashboard tidyr]; }; estatapi = derive2 { name="estatapi"; version="0.4.0"; sha256="0wp5w9w0b832fnl7kchjqmychnf5896q50grw8hwdc1km14dfzkg"; depends=[dplyr httr purrr readr rlang tibble]; }; estimability = derive2 { name="estimability"; version="1.4.1"; sha256="090i1xwdp4fwj8jr8nk13w49516lfkk5mq1w7l0lff9g8lgaynn6"; depends=[]; }; estimateW = derive2 { name="estimateW"; version="0.0.1"; sha256="0fgbyfnxxs6kp9p17ljvj72q5vd4xn7kwh4zbmzjx45cdq101bjv"; depends=[Matrix matrixcalc plot_matrix R6]; }; @@ -9093,13 +9201,13 @@ in with self; { etree = derive2 { name="etree"; version="0.1.0"; sha256="1qnky9jqcfbq60s4h3igyq77r7f559i714i5g7ss14zcx86zkpdi"; depends=[brainGraph cluster energy fda_usc igraph NetworkDistance partykit survival TDA usedist]; }; etrm = derive2 { name="etrm"; version="1.0.1"; sha256="0jzwvz2ddh3w4y1kgqwdj7py376w6dwbvqhjmiiikr7qsgap23fk"; depends=[ggplot2 reshape2]; }; etrunct = derive2 { name="etrunct"; version="0.1"; sha256="0ayazgyqlc8jcqr03cwfmfhm4pck6xri1r6vkgqy4arqkrrnrcqr"; depends=[]; }; - etwfe = derive2 { name="etwfe"; version="0.3.1"; sha256="0kyai3s1jfic76dqq7fb9cjln438klgfalzy5dmlbgk3mj1dba48"; depends=[data_table fixest Formula marginaleffects]; }; + etwfe = derive2 { name="etwfe"; version="0.3.3"; sha256="0v1n5n1k0kairynrj4hqli62zm1bkqrly92wpyiv7zg4zjal575m"; depends=[data_table fixest Formula marginaleffects]; }; eudract = derive2 { name="eudract"; version="0.10.1"; sha256="0qznnfflmxgx6ic5lfw0vcv1jm6hs7g3srly90vj70adjcb49sbd"; depends=[dplyr httr magrittr tidyr xml2 xslt]; }; eulerian = derive2 { name="eulerian"; version="1.0"; sha256="0yhpnx9vnfly14vn1c2z009m7yipv0j59j3s826vgpczax6b48m0"; depends=[graph]; }; eulerr = derive2 { name="eulerr"; version="7.0.0"; sha256="16a84a2xgv1iqsir0hzn6qclljni4f3prpycb7qpp06vrd0yn8lw"; depends=[GenSA polyclip polylabelr Rcpp RcppArmadillo]; }; eurlex = derive2 { name="eurlex"; version="0.4.4"; sha256="0ncbzixrr0fxjgyhwjwa2y8aqpq7c9m9v3g733n2zg88jpkqqr0q"; depends=[antiword curl dplyr httr magrittr pdftools readr rlang rvest stringr tidyr xml2]; }; - eurocordexr = derive2 { name="eurocordexr"; version="0.2.2"; sha256="081p9qs09xif2cck0gmmqgzaly1r2p77kla2nhcvjgxgdylbsdkd"; depends=[data_table fs lubridate magrittr ncdf4 ncdf4_helpers PCICt]; }; - eurodata = derive2 { name="eurodata"; version="1.6.1"; sha256="1b8p7vp6mk3y8v2yhh9pkhm8kqx9nncscy0wzfi6kqbnyn5i77dz"; depends=[data_table magrittr memoise R_utils Rcpp stringr xml2 xtable]; }; + eurocordexr = derive2 { name="eurocordexr"; version="0.2.3"; sha256="0b31xdcf5z09nvxb7l34l37ysc0y5gdk3jyjsi1qf4kkzcpfbyng"; depends=[data_table fs lubridate magrittr ncdf4 ncdf4_helpers PCICt]; }; + eurodata = derive2 { name="eurodata"; version="1.7.0"; sha256="0xw6b178jpg4dlgx6af1bh6z2m6apd12lbz03yzp7ay93ghf7zsi"; depends=[data_table magrittr memoise R_utils Rcpp stringr xml2 xtable]; }; europeanaR = derive2 { name="europeanaR"; version="0.1.0"; sha256="11cr8n64yv50zwib9wkvk1j43p9a1cmxmzznxykczv43l193kjg7"; depends=[data_table httr jsonlite magrittr Rdpack]; }; europepmc = derive2 { name="europepmc"; version="0.4.1"; sha256="16japbndid34shqg8n0bmjrxn84xmhrylvz832zclcllm6i93fn1"; depends=[dplyr httr jsonlite plyr progress purrr rlang tibble tidyr urltools xml2]; }; europop = derive2 { name="europop"; version="0.3.1"; sha256="1ym257bxr4a0dmln1j8x3pf87wrryzgqyzhvk61whc6n2bj62x1s"; depends=[]; }; @@ -9108,18 +9216,19 @@ in with self; { evabic = derive2 { name="evabic"; version="0.1.1"; sha256="0f34shsacf9lyb2hlp2f0nhqy2ihy1zqg52npx8ap2li0s4y0x24"; depends=[]; }; evalITR = derive2 { name="evalITR"; version="0.3.0"; sha256="16xx6blq51hck04zxvya4iyv9d6i1zkrqyfg10vc0kc3626vnlrn"; depends=[dplyr MASS Matrix quadprog]; }; evalR = derive2 { name="evalR"; version="0.0.1"; sha256="0gb9bi9kfpqv0asbrcz2kdf1grxbjipdq97jmlgbzr5rn9jski01"; depends=[Rcpp]; }; - evaluate = derive2 { name="evaluate"; version="0.20"; sha256="1w7zi9cvbn3751hprfpb7waia4faqn8xa8q9jrc0nq03avldkx9m"; depends=[]; }; + evaluate = derive2 { name="evaluate"; version="0.21"; sha256="1f92kjlds2nckmsjxx07xm2pikpc9x6hcvc0538xf5w9xsfcjy1i"; depends=[]; }; evclass = derive2 { name="evclass"; version="2.0.0"; sha256="1pa1vb5lzglq0sdiwy2xgy5b76h43vfdajs346jbmrzm7xvximpj"; depends=[FNN ibelief R_utils]; }; evclust = derive2 { name="evclust"; version="2.0.2"; sha256="107x61vmkfmy3bmcaywz96qj35bmz4nydd0zn9amm2xnbb37lg31"; depends=[FNN limSolve Matrix mclust plyr quadprog R_utils]; }; evd = derive2 { name="evd"; version="2.3-6.1"; sha256="0wc95hfj0gwkyghipdrhwd3s6q2agh9x2wy6y7dr6mjw7wnmjb36"; depends=[]; }; evdbayes = derive2 { name="evdbayes"; version="1.1-3"; sha256="1adlwyr1csjmwcpc7jsywzggpvr3fk500hyahzy774jmgj3j09vh"; depends=[]; }; event = derive2 { name="event"; version="1.1.1"; sha256="0w3v8j61y7vr0cjl8a1rkvi4pyjlfhmzzn1n4dgkivac4iafzqjj"; depends=[rmutil]; }; eventInterval = derive2 { name="eventInterval"; version="1.3"; sha256="0nybzy2mpmazcvz06mkv7l9741mjm3i2q2sindq0777vb2k4504v"; depends=[MASS]; }; - eventPred = derive2 { name="eventPred"; version="0.0.1"; sha256="1rbfcjj067ahi5liwpw06xvjfp0lxcqp2q2gqw9qib9rain6zpc4"; depends=[dplyr erify ggplot2 lubridate Matrix mvtnorm patchwork rlang rstpm2 scales survival tmvtnsim]; }; + eventPred = derive2 { name="eventPred"; version="0.1.4"; sha256="0lzfwg544xh5zjgcxf3r695sb5x8lz5xggp7gvm7cxynrxr3rq3i"; depends=[dplyr erify flexsurv Matrix mvtnorm numDeriv plotly rlang rstpm2 survival tmvtnsim]; }; eventTrack = derive2 { name="eventTrack"; version="1.0.2"; sha256="0rndd86yz8xhb35pi7j1zrcapb3ny51v2y4cvld94avpwbvg5m0r"; depends=[muhaz survival]; }; eventdataR = derive2 { name="eventdataR"; version="0.3.1"; sha256="04hji0s5vglq60mv4kf368ny749rfr3hqlm78ch1dqh0f0nknk8q"; depends=[]; }; eventglm = derive2 { name="eventglm"; version="1.2.2"; sha256="0f9vmm47g6cfvspil44zki2isd49zy6hx4cvl3vqksj57pbw8g0p"; depends=[geepack sandwich survival]; }; eventstream = derive2 { name="eventstream"; version="0.1.1"; sha256="10dngj6xzf072gyz8wcs3g30ihqvxdmg9h3q8m3d3lf17v3a75d6"; depends=[abind changepoint dbscan dplyr glmnet MASS tensorA]; }; + eventstudyr = derive2 { name="eventstudyr"; version="1.0.2"; sha256="0v04r8agmjv72rrx52m3i7cxy13fd8lg8xvl9lwcpba4vzh747dy"; depends=[car data_table dplyr estimatr ggplot2 MASS pracma rlang stringr]; }; evgam = derive2 { name="evgam"; version="1.0.0"; sha256="0f8a29c2qxlzqadq694j6gwrj8rdq7x1kqwn79di7ycxfi7ifdbq"; depends=[mgcv Rcpp RcppArmadillo]; }; evian = derive2 { name="evian"; version="2.1.0"; sha256="1slnzq55gg3p16fs22v69mafiggiy5f70sj8fh65lc0hphybh6w2"; depends=[doParallel foreach ProfileLikelihood sandwich]; }; evidence = derive2 { name="evidence"; version="0.8.10"; sha256="02kqk95kx4nv13fg6z55a5rv6sq6lv8azg0jjxbkg1j6hg15p7ai"; depends=[LaplacesDemon lattice LearnBayes loo rstan rstanarm]; }; @@ -9135,6 +9244,7 @@ in with self; { evolvability = derive2 { name="evolvability"; version="2.0.0"; sha256="0l81d48zvvnbxlx1mj4qwga1kdzk05pzdvsp4ghi93pzzynfqn9s"; depends=[ape coda lme4 Matrix]; }; evoper = derive2 { name="evoper"; version="0.5.0"; sha256="064fcpd04ws8v6sl0bakiw34jmmfpg1w5pkq94y2gh1c576x4vwz"; depends=[boot data_table deSolve futile_logger ggplot2 plot3D plyr reshape RNetLogo rrepast]; }; evreg = derive2 { name="evreg"; version="1.0.2"; sha256="0fbrbd60f8fvby369a2ffmg29xq2rrjfgrb3xp8b9wn13mvk0vzr"; depends=[evclust]; }; + evt0 = derive2 { name="evt0"; version="1.1-4"; sha256="0hqsv72wswnmgirhwb671snmg65qb1j77pfvzaqw9mi8lmvqalpq"; depends=[evd]; }; evtclass = derive2 { name="evtclass"; version="1.0"; sha256="1ny43sry257cxlg56f0lj1szv9ci3ymskj6l5sn43l5a2pq62g4l"; depends=[evd fitdistrplus RANN]; }; evtree = derive2 { name="evtree"; version="1.0-8"; sha256="1dmzbsyrg8wwzzqcxzqmgm7yai37lh9lkjhizhr2h0k03s5xdv1k"; depends=[partykit]; }; ewoc = derive2 { name="ewoc"; version="0.3.0"; sha256="0r8b5vq0qzp3f0dasxmrngldqlymca90sj019rzs1a0qf28wlgbr"; depends=[coda doParallel doRNG foreach Formula ggplot2 rjags]; }; @@ -9174,7 +9284,7 @@ in with self; { expertsurv = derive2 { name="expertsurv"; version="1.1.0"; sha256="0y0j55vrkhp6d46cr4fsh5gqzxhqr6sq8dgn6nagvd8l8c30246c"; depends=[abind BH dplyr flexsurv ggplot2 loo magrittr Rcpp RcppEigen RcppParallel Rdpack rms rstan rstantools scales SHELF StanHeaders stringr survival tibble tidyselect]; }; expint = derive2 { name="expint"; version="0.1-8"; sha256="1cn6c84pqf8bgk109qm4znn186h6s6cpll3d11cw144h0vh4yr8j"; depends=[]; }; expirest = derive2 { name="expirest"; version="0.1.5"; sha256="08gwy1fikj7kg7h6fc7w15621jc0prdqdhzx14ad6dvdi5rd33gv"; depends=[ggplot2 rlang]; }; - explor = derive2 { name="explor"; version="0.3.9"; sha256="0sfpw9lgpr9hyn93jwxhijbfqnj466wc5ilszki2r7ziik3nb79i"; depends=[dplyr DT formatR ggplot2 highr RColorBrewer scatterD3 shiny tidyr]; }; + explor = derive2 { name="explor"; version="0.3.10"; sha256="102rjnllk5xxsik42dd8m1rryz5y2h2dwmidy2jy3zlylgc4dhdr"; depends=[dplyr DT formatR ggplot2 highr RColorBrewer scatterD3 shiny tidyr]; }; exploratory = derive2 { name="exploratory"; version="0.3.13"; sha256="164ykw514gfj185ckg3p8jfn7y5al12iab34fqyrkrqpj84gf1qd"; depends=[data_table DT ggplot2 ggridges lemon lm_beta mediation remotes shiny shinydashboard weights]; }; explore = derive2 { name="explore"; version="1.0.2"; sha256="11h3a6npnimaidfr8dx1yq872131hd9nyc4igcb49ibrxnhcnc8f"; depends=[assertthat broom dplyr DT forcats ggplot2 gridExtra magrittr MASS rlang rmarkdown rpart rpart_plot shiny stringr tibble tidyr]; }; exploreR = derive2 { name="exploreR"; version="0.1"; sha256="154j5wiiy9vqdvh1qvdkz2fdp2phcygbbjl7nj5nkn07xwxbsc77"; depends=[ggplot2]; }; @@ -9195,12 +9305,12 @@ in with self; { extraDistr = derive2 { name="extraDistr"; version="1.9.1"; sha256="1gypnbvdzczl0mvznvy8r7hzsvc5gvdvi2mmzj21cqdw9n63944r"; depends=[Rcpp]; }; extrafont = derive2 { name="extrafont"; version="0.19"; sha256="13dbrlf54nbyfz3z2snz7x4m6rfnnhk2l8kkwpgcagzi5lar13sf"; depends=[extrafontdb Rttf2pt1]; }; extrafontdb = derive2 { name="extrafontdb"; version="1.0"; sha256="115n42hfvv5h4nn4cfkfmkmn968py4lpy8zd0d6w5yylwpzbm8gs"; depends=[]; }; - extrafrail = derive2 { name="extrafrail"; version="1.4"; sha256="1p8lmkv37n49y2midssjmgbybr2w1laj48bcd17405bb5w249ghk"; depends=[expint msm pracma survival]; }; + extrafrail = derive2 { name="extrafrail"; version="1.6"; sha256="02phbgkl7r3v382dq194pcnxbc24323dls99x6j0510fnhl92i2g"; depends=[expint msm pracma survival]; }; extraoperators = derive2 { name="extraoperators"; version="0.1.1"; sha256="1clyp97ssmdq9ggbv3w5yskx7khnlm4ji7ym3k3b4bx1pazcw4q4"; depends=[]; }; - extras = derive2 { name="extras"; version="0.5.0"; sha256="1y9i2vxp06yy0p26n8l4ky9i5zwdhdny1nw62lk6h3yk4rn63qca"; depends=[chk lifecycle]; }; + extras = derive2 { name="extras"; version="0.6.1"; sha256="1m807qay8zj4wbghajvmph87rwsjfhra5090adf8i42bif29phwb"; depends=[chk lifecycle]; }; extraterrestrial = derive2 { name="extraterrestrial"; version="0.1.0"; sha256="0clss1zwgw1497n2xif82kplr1w1ajs4xs02041ads3l8craj7y1"; depends=[]; }; extremeIndex = derive2 { name="extremeIndex"; version="0.0.3"; sha256="19zkqabk7n5v4nnwlkxbrym4rf1ljbpblggiqd9s9f6ylir417pv"; depends=[boot evd evir gmm]; }; - extremeStat = derive2 { name="extremeStat"; version="1.5.3"; sha256="17l7ccnyg09dg9a3204b51axmj46gghmlqkd4kq6fsldmwic1zv6"; depends=[berryFunctions evd evir extRemes fExtremes ismev lmomco pbapply RColorBrewer Renext]; }; + extremeStat = derive2 { name="extremeStat"; version="1.5.5"; sha256="0jjarsb45xzdkdca76k7g06c25xq2r3q1ldcxyb0jf26j4lkhi37"; depends=[berryFunctions evd evir extRemes fExtremes ismev lmomco pbapply RColorBrewer Renext]; }; extremefit = derive2 { name="extremefit"; version="1.0.2"; sha256="07gx6dp0kz4y1jn90hsfvkhn6k7i4flh7ghdz9v5nwda86f55q2s"; depends=[]; }; extremevalues = derive2 { name="extremevalues"; version="2.3.3"; sha256="0ijha5zzmv3qr0czm4qxk28kg3ql5jh3nk9fr0flzl8d9n3z0jx6"; depends=[gWidgets2 gWidgets2tcltk]; }; extremis = derive2 { name="extremis"; version="1.2.1"; sha256="11y3cb5z6vsrpdffdr44afz3is0ikxvpb81a8pwc7p8q63rxq4a2"; depends=[emplik evd MASS]; }; @@ -9218,7 +9328,7 @@ in with self; { ez_combat = derive2 { name="ez.combat"; version="1.0.0"; sha256="1vpycf6gambwg8218wwjc9h3rhsin7qrhh0mpd3r6n9fp03y634f"; depends=[]; }; ezCutoffs = derive2 { name="ezCutoffs"; version="1.0.1"; sha256="04ah9dbfwl89xi0di0dslaf8a39nynxymm8lbacgd88al5dg7y1n"; depends=[doSNOW foreach ggplot2 lavaan moments progress]; }; ezEDA = derive2 { name="ezEDA"; version="0.1.1"; sha256="1qcgvcjksdajn2rhv52bgqz3n0lnxynjdx4gwhkgsy29ffa0sq2c"; depends=[dplyr GGally ggplot2 magrittr purrr rlang scales tidyr]; }; - ezcox = derive2 { name="ezcox"; version="1.0.2"; sha256="0mikrdmi3q7qc2fvh1hk6fwy2y9xafwggyvx0cgnzzqi5gjjfki7"; depends=[dplyr forestmodel ggplot2 magrittr purrr rlang scales survival tibble]; }; + ezcox = derive2 { name="ezcox"; version="1.0.4"; sha256="0k29c566mysmry8xn2b7chnmacnav0inbiadv1sb0gfmg5yv8zdm"; depends=[dplyr forestmodel ggplot2 magrittr purrr rlang scales survival tibble utf8]; }; ezec = derive2 { name="ezec"; version="1.0.1"; sha256="0lpx55a8fhy6fqdv3zvzx9mh75q34r71v5kp96hkm9jzl4yvrpd2"; depends=[dplyr drc]; }; ezglm = derive2 { name="ezglm"; version="1.0"; sha256="0x7ffk3ipzbdr9ddqzv0skmpj5zwazkabibhs74faxnld7pcxhps"; depends=[]; }; ezknitr = derive2 { name="ezknitr"; version="0.6.2"; sha256="15ibkndqx8fbsrckkcj75mflqsryjpmn7qqygp5z1abzgpj05j6n"; depends=[knitr markdown R_utils]; }; @@ -9226,7 +9336,7 @@ in with self; { ezplot = derive2 { name="ezplot"; version="0.7.5"; sha256="1706cb52pl9v7r3mrlcjvybb2b2r5x92sw7dmk1hk34w7wp4sifx"; depends=[dplyr forcats ggplot2 lubridate rlang]; }; ezr = derive2 { name="ezr"; version="0.1.5"; sha256="0r4zq0864xpnmczg1zpaasi348j1fllrn0rqfa5fmjh245chcpd4"; depends=[data_table DT ggplot2 ggridges moments shiny shinydashboard weights]; }; fANCOVA = derive2 { name="fANCOVA"; version="0.6-1"; sha256="04mw0blgpwdk6wdg8llrig43psgc0vb42cbimvzbnym8v503dsn3"; depends=[]; }; - fAssets = derive2 { name="fAssets"; version="3042.84"; sha256="0aj3gjd54ajviikwh075bympw7dx2dcsgj5p8j96vx2qbbwjmgvb"; depends=[ecodist energy fBasics fMultivar MASS mvnormtest robustbase sn timeDate timeSeries]; }; + fAssets = derive2 { name="fAssets"; version="4023.85"; sha256="1yrs3mfq8ym5pdmf6236xwnc8176z7j36f2bzrrwdfp7kz2gq0id"; depends=[ecodist energy fBasics fMultivar MASS mvnormtest robustbase sn timeDate timeSeries]; }; fBasics = derive2 { name="fBasics"; version="4022.94"; sha256="1mka9avcdkq4sj40xa15hrjm1f8ppzbvw3yzxbhkbaw9c130qfy8"; depends=[gss MASS spatial stabledist timeDate timeSeries]; }; fBonds = derive2 { name="fBonds"; version="3042.78"; sha256="1yb5vyqj66m82xks5qi5cnsppylpprbk656z4lxzg30873hi8pcf"; depends=[fBasics timeDate timeSeries]; }; fCopulae = derive2 { name="fCopulae"; version="4022.85"; sha256="18gjlh254wm2yjyxrhrlbhjp6qvan3yway2m3fb0dqskd6dwmgq2"; depends=[fBasics fMultivar timeDate timeSeries]; }; @@ -9239,14 +9349,14 @@ in with self; { fMRItools = derive2 { name="fMRItools"; version="0.2.2"; sha256="1qqa6gx7yr8cv6d7pxs1d9jm72zl9c2rri9hl088rbx9l6g4jacp"; depends=[]; }; fMultivar = derive2 { name="fMultivar"; version="4021.83"; sha256="09jb2zhyji2yxn5ks1ghi33y83vlpkyacxqc0g223fl62ff2ac6d"; depends=[cubature fBasics mvtnorm sn]; }; fNonlinear = derive2 { name="fNonlinear"; version="4021.81"; sha256="1dpzg880wnja357qy3r4v5qbqhx7pkknd0rph75xvvn38p4rc0ca"; depends=[fBasics timeDate timeSeries]; }; - fPortfolio = derive2 { name="fPortfolio"; version="3042.83.1"; sha256="1knyrjgfzwf4ppvnb5n325p5f6sidr6q53ss0zw8binhj22gli4y"; depends=[fAssets fBasics fCopulae kernlab MASS quadprog Rglpk rneos robustbase Rsolnp slam timeDate timeSeries]; }; + fPortfolio = derive2 { name="fPortfolio"; version="4023.84"; sha256="0vk9j8yk2nkz28gb2nh1jrfrqk6n77jm0qfa3j1y65l2rbya0rvg"; depends=[fAssets fBasics fCopulae kernlab MASS quadprog Rglpk rneos robustbase Rsolnp slam timeDate timeSeries]; }; fRegression = derive2 { name="fRegression"; version="4021.83"; sha256="12xwq90rch8s8jk3m4ckk6bxjf5phwx8hjwxjdsk2r07afvfc2zi"; depends=[fBasics lmtest MASS mgcv nnet polspline timeDate timeSeries]; }; fSRM = derive2 { name="fSRM"; version="0.6.5"; sha256="0qp2pcq01vfgaczd57j4wmzvn4srzlwh7ya3sdp7vwzyb8dbjajn"; depends=[foreign ggplot2 gridExtra lavaan plyr reshape2 scales tcltk2]; }; fTrading = derive2 { name="fTrading"; version="3042.79"; sha256="0xnfg4npfdrvmp1n6vbsm7if16n5j83b7y1i2m5b34cqnlz9d69y"; depends=[fBasics timeDate timeSeries]; }; fUnitRoots = derive2 { name="fUnitRoots"; version="4021.80"; sha256="1ycsa5mw43mdrp4xb39j8n0c393qmmnyc7ncbkcjgyms2xk8fhjh"; depends=[fBasics timeSeries urca]; }; fabCI = derive2 { name="fabCI"; version="0.2"; sha256="1vga322xpqzsh40n74v8vqiq8zbzrabvg58mp50bcx2ml0dikgnm"; depends=[MASS]; }; fabMix = derive2 { name="fabMix"; version="5.0"; sha256="1gii3mdii9nw423xxn9mhv1pjbw967wdarn828w04zm9dkdcwm48"; depends=[coda corrplot doParallel foreach ggplot2 label_switching MASS mclust mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; - fabR = derive2 { name="fabR"; version="1.1.0.1003"; sha256="14yfvxcip89q4dnxx5svm9vq81lw5r9crkyc217jga30lv6wax80"; depends=[digest dplyr DT fs ggplot2 janitor lubridate magrittr purrr readr readxl rlang stringr tidyr tidytext writexl]; }; + fabR = derive2 { name="fabR"; version="1.1.1"; sha256="0nhxb9qbfy5almbyc6x1cfw3mfncqbx9wsc66780awnppph3bmcv"; depends=[digest dplyr DT fs ggplot2 janitor lubridate purrr readr readxl rlang stringr tidyr tidytext writexl]; }; fabisearch = derive2 { name="fabisearch"; version="0.0.4.5"; sha256="0yxmw7d7j3llcfs4d0dn2vv4ajalwz0qxrg7bqgql8dvwrb9jgkh"; depends=[doParallel doRNG foreach NMF reshape2 rgl]; }; fable = derive2 { name="fable"; version="0.3.3"; sha256="0rld2lnhi2wn5skcmx9mwrb2rj1yhphy6xq0m3im252y1zc4bm7v"; depends=[distributional dplyr fabletools Rcpp rlang tibble tidyr tsibble]; }; fable_ata = derive2 { name="fable.ata"; version="0.0.3"; sha256="0rjy5kj10sw2i9ghrsz67l40j7niw9mxm14kzg6prnc34200ki0n"; depends=[ATAforecasting distributional dplyr fabletools lubridate rlang tibble tsbox tsibble]; }; @@ -9272,19 +9382,20 @@ in with self; { factset_protobuf_stach_v2 = derive2 { name="factset.protobuf.stach.v2"; version="1.0.6"; sha256="1w6fsamkz8g9mkjd2my5wdv52fav8ikp3jlfil8amfbclmhdbx22"; depends=[R6 RProtoBuf]; }; factset_protobuf_stachextensions = derive2 { name="factset.protobuf.stachextensions"; version="1.0.3"; sha256="1v1sizb95x2h6zcxzi0ib5nbbfiki8qsj4lp41ap6xp6qr6fwn0f"; depends=[jsonlite R6 stringr]; }; fad = derive2 { name="fad"; version="0.9-1"; sha256="19j8n13r50sc1srpi4vj58h15yp89im2x7ga5323rmwklx1yj6zg"; depends=[Matrix Rcpp RcppEigen RSpectra]; }; + faersquarterlydata = derive2 { name="faersquarterlydata"; version="1.0.0"; sha256="0pzi76pl3a6a43khz4w0fydxdadg2lqv076l202wng81c429rsi4"; depends=[data_table dplyr stringr tableone tibble tidyr xml2]; }; fail = derive2 { name="fail"; version="1.3"; sha256="0vfm6kmpmgsamda5p0sl771kbnsscan31l2chzssyw93kwmams7d"; depends=[BBmisc checkmate]; }; fairadapt = derive2 { name="fairadapt"; version="0.2.5"; sha256="0pxv7xz8r8kls5mm6dcxzqg5z2y3jhs8pnzbw34h1lyj16zb20b2"; depends=[assertthat cowplot ggplot2 igraph qrnn quantreg ranger scales]; }; - fairml = derive2 { name="fairml"; version="0.7"; sha256="0j40hx8wbx4virs6zm0drdij8m7ir3ygp96rxhyzn0k1l0vz1j0k"; depends=[CVXR glmnet optiSolve]; }; + fairml = derive2 { name="fairml"; version="0.8"; sha256="17rzg2256nb4xnrzkc8c3fiwbwqf8fr69rk5k08wrbrnjr2c05dg"; depends=[glmnet]; }; fairmodels = derive2 { name="fairmodels"; version="1.2.1"; sha256="0wxk2z5xh2dc9m9z6dz8cq911n4fd4a5zl03bg32nh05zq09xhwp"; depends=[DALEX ggplot2 patchwork scales]; }; fairness = derive2 { name="fairness"; version="1.2.2"; sha256="12jf2p8gmj5d6r9h9cwy208qwyqi606b54v0d99vpr171yijqvqk"; depends=[caret devtools e1071 ggplot2 pROC]; }; fairsubset = derive2 { name="fairsubset"; version="1.0"; sha256="0iw16fs2mb9p14vr34izw3sirbndyy8w07df3scy7gkkcx2nz2bz"; depends=[matrixStats]; }; - fake = derive2 { name="fake"; version="1.3.0"; sha256="09pl3q8q9pxmqbz19p4gi4xxqzyg99gs6wgd6wa80vjfc7xjqh87"; depends=[huge igraph MASS Rdpack withr]; }; + fake = derive2 { name="fake"; version="1.4.0"; sha256="1w852a5ywybsdyvlll2dvrj17isjmiwjwhi43vml7j1k0lv9m86v"; depends=[huge igraph MASS Rdpack withr]; }; + fakir = derive2 { name="fakir"; version="1.0.0"; sha256="1xya74qf68k3jcb7fk868j6c92axmm5vd5mgf9vzk4w4lm065q7l"; depends=[attempt charlatan dplyr glue lubridate magrittr purrr tibble tidyr withr]; }; fakmct = derive2 { name="fakmct"; version="0.1.0"; sha256="172g7gx6019bimfg4lm253sp9c7rcmm56c5wmxv1g575fr393n8k"; depends=[]; }; falcon = derive2 { name="falcon"; version="0.2"; sha256="09hlvwwj3k3nhcsxijjvv8x74a9m200ayjjplrp4baxvczwyq341"; depends=[]; }; falconx = derive2 { name="falconx"; version="0.2"; sha256="0648mvbc7ga7vr2xqzyln3dgd11h5s4bqhv3p55mj7smr4qv7hv9"; depends=[]; }; fam_recrisk = derive2 { name="fam.recrisk"; version="0.1"; sha256="1lyrq7bq7p7ijc2vf545nazw4akncz08548ya1dv3lsc5jmkgfzj"; depends=[]; }; famSKATRC = derive2 { name="famSKATRC"; version="1.1.0"; sha256="1xbh0by4sjxrmy00v1svcj3lb98p9krpncbhpjbli1jd2p47yk60"; depends=[bdsmatrix CompQuadForm coxme kinship2]; }; - fame = derive2 { name="fame"; version="2.21.1"; sha256="18lzf2vxyzlmd73m9q0si663mjjm66nrf7q1iy0fw73gpvxqr9bf"; depends=[tis]; }; familial = derive2 { name="familial"; version="1.0.4"; sha256="01k7pc2li1la0b0rxs2r2vb5k5qllhm6ykvs4xl455g6gg4pcbrc"; depends=[DepthProc ggplot2 matrixStats]; }; familiar = derive2 { name="familiar"; version="1.4.1"; sha256="0nm000lbq1va7r1x12q1yzy4mqzr8zc4ac2nlvw9cn3l9jmgdyj7"; depends=[data_table rlang rstream survival]; }; fanc = derive2 { name="fanc"; version="2.3.9"; sha256="02w10lm4nggab5q16ld9xgpa4x4bygfiigs8m12yiah5ah1n5vk8"; depends=[ellipse Matrix]; }; @@ -9301,7 +9412,7 @@ in with self; { farr = derive2 { name="farr"; version="0.2.30"; sha256="0bzq9kbqp77m1jdb6sqd5axk783la7zs3y0i68fqydh50s0r3z2g"; depends=[DBI dbplyr dplyr lubridate magrittr readr rlang rpart stringr tibble tidyr]; }; farrell = derive2 { name="farrell"; version="0.2.1"; sha256="0i546w5p40j9wqiq7qvbxw0426msavbdpnh258jcg6bagc6bywh8"; depends=[Benchmarking data_table dplyr DT magrittr miniUI readr rlang shiny shinycssloaders shinyWidgets tibble]; }; farver = derive2 { name="farver"; version="2.1.1"; sha256="1klnr73fhm7n46q85in1v9gi99y6rcdzzg4h4wvnbx23lxndmkqd"; depends=[]; }; - fasano_franceschini_test = derive2 { name="fasano.franceschini.test"; version="2.1.1"; sha256="0h28ph562ac345l022x9jblzhkk7qn2knrp5jh38flw0xkv9g2yf"; depends=[Rcpp RcppParallel]; }; + fasano_franceschini_test = derive2 { name="fasano.franceschini.test"; version="2.2.1"; sha256="1d4ai05c81sslkvxsis4pvzigx306nly120k67jlj8vn7p8wdlhy"; depends=[Rcpp RcppParallel]; }; fasjem = derive2 { name="fasjem"; version="1.1.2"; sha256="1bbrcyyg96hakgla3604byrkn9034197vy2is048kdq20yr2y11n"; depends=[igraph]; }; fasstr = derive2 { name="fasstr"; version="0.5.1"; sha256="1kzk759xvba66fq4zw0p0kwfgbk42bw5z2fi7f8ziy4vzkpwcy93"; depends=[dplyr e1071 fitdistrplus ggplot2 lubridate openxlsx PearsonDS plyr purrr RcppRoll scales tidyhydat tidyr zyp]; }; fastAFT = derive2 { name="fastAFT"; version="1.2"; sha256="1vcl28fddaw082a1xqpz5alznjyvh7mf9lvn4y41dx3bbfjlv8m4"; depends=[]; }; @@ -9327,7 +9438,6 @@ in with self; { fasta = derive2 { name="fasta"; version="0.1.0"; sha256="0wnppxn3039dj58xm0b66fsyq537bk8k8m56im11xj1iwc3zc6vw"; depends=[]; }; fastadi = derive2 { name="fastadi"; version="0.1.1"; sha256="1hvi430ws1yzw10fp4z177wc1bnj11pxmvjsbmx0p54bcbb3a32a"; depends=[ellipsis glue logger LRMF3 Matrix Rcpp RcppArmadillo RSpectra]; }; fastai = derive2 { name="fastai"; version="2.2.1"; sha256="1glq64hhwrwp29scf851nb6nl83hpvvy8cj37z2r36r89i5inp4b"; depends=[generics ggplot2 ggpubr glue png reticulate]; }; - fastclime = derive2 { name="fastclime"; version="1.4.1"; sha256="0zcir8r11b2hxr9vvkmvxlzmhfcaxbr0wbjy86ysr912mp8fs9i3"; depends=[igraph lattice MASS Matrix]; }; fastcluster = derive2 { name="fastcluster"; version="1.2.3"; sha256="009amz7i5yndqw2008fgd3p11n4fsb291k2ypg3pip6dw4lr28hz"; depends=[]; }; fastcmh = derive2 { name="fastcmh"; version="0.2.7"; sha256="0hib3r3pkfdi67bdy4pf1pw6869vq4b3pg1pq1zwpyy76nbnq9vl"; depends=[bindata Rcpp]; }; fastcox = derive2 { name="fastcox"; version="1.1.3"; sha256="0jn19v6mkwgyz8x63xrfgkgnf0f2rq338r5qkhz690mdzr4c47a3"; depends=[Matrix]; }; @@ -9341,7 +9451,7 @@ in with self; { fastmaRching = derive2 { name="fastmaRching"; version="1.1.0"; sha256="085xr5i6h6vwl1flzbkwqsm8d815s0p02p0mir60jqjvy0s7haip"; depends=[raster rgdal sp]; }; fastmap = derive2 { name="fastmap"; version="1.1.1"; sha256="0wvibiy16i30nzg5k80md68lpz7g6iwbl02j4fyqmbhns2fq08rn"; depends=[]; }; fastmatch = derive2 { name="fastmatch"; version="1.1-3"; sha256="0qcq1gwl9pijgp34giyq5y9rk0ly3d7xza2b7r68xx63ifqa1vqx"; depends=[]; }; - fastmatrix = derive2 { name="fastmatrix"; version="0.4-1245"; sha256="0wyqs5kcvii2ss8nwn14c396yvvh8k0hlb0zlb68aifsvjsi4bpf"; depends=[]; }; + fastmatrix = derive2 { name="fastmatrix"; version="0.5"; sha256="04izdin7qv04mc1ssjj7n5am4wi6abwyvdxvvgln2la2k0d2apzv"; depends=[]; }; fastmit = derive2 { name="fastmit"; version="0.1.1"; sha256="13hczsfbzssd272kpbq8l2l64lqrkmi2j6f3xyp9jvvxdd506kq0"; depends=[Rcpp RcppArmadillo]; }; fastnet = derive2 { name="fastnet"; version="1.0.0"; sha256="1c07msypxj8ilpa1il9jjbgylwpdxv8j8gak362xdmbm4b1bwlm6"; depends=[doParallel foreach igraph tidygraph]; }; fastpos = derive2 { name="fastpos"; version="0.5.1"; sha256="0a55fydlcn2h27vizv4w3gma26v2a32li81x09hvk519yfy8ph1k"; depends=[lifecycle MASS pbmcapply plyr Rcpp RcppArmadillo RcppProgress tibble]; }; @@ -9354,8 +9464,9 @@ in with self; { fasttime = derive2 { name="fasttime"; version="1.1-0"; sha256="00290sxfa6nihahm3s9bslpsmyfm0cpziajmr9mg7grxrzx53ia6"; depends=[]; }; fastverse = derive2 { name="fastverse"; version="0.3.1"; sha256="1i2gvvzcbgvg0xpakbyamkrf0f9kanrgzyna2nwy3wn4js8c5jhh"; depends=[collapse data_table kit magrittr]; }; fat2Lpoly = derive2 { name="fat2Lpoly"; version="1.2.5"; sha256="08bbd17aqmfcacvk283bpf9cp1isf5pgfdciwxn0f7ahdzd81g4s"; depends=[kinship2 multgee]; }; + faux = derive2 { name="faux"; version="1.2.1"; sha256="143yc71cfsxnczi719ygrsynxry60nh8263gg8vwp3qrc80j80lh"; depends=[dplyr ggplot2 jsonlite lme4 rlang truncnorm]; }; fauxnaif = derive2 { name="fauxnaif"; version="0.7.1"; sha256="1d2sfcknlaa4m3sq3cg65iq17x3ax0zgkgxkcyin3d8r3sw9k3p6"; depends=[cli rlang]; }; - fauxpas = derive2 { name="fauxpas"; version="0.5.0"; sha256="129fzqb7wsskbn50s8x0marr4wm8jrns6hiycqcsk166k3dnyyy8"; depends=[httpcode R6 whisker]; }; + fauxpas = derive2 { name="fauxpas"; version="0.5.2"; sha256="1xhyws6nr9ayir4sykvhyaf1aprx9rjm2xyb3p5ikd26l5hp7l44"; depends=[httpcode R6 whisker]; }; faviconPlease = derive2 { name="faviconPlease"; version="0.1.2"; sha256="0vc2c7mj8igq4nbs9ass8s33rjc4bkly0y9c2x7vh82hajbzrvwn"; depends=[xml2]; }; favnums = derive2 { name="favnums"; version="1.0.0"; sha256="0siax7gjr25lpf1li3hawx6nviggs68c0lap2d9i38azlhvj891w"; depends=[]; }; fbRads = derive2 { name="fbRads"; version="0.2"; sha256="1a65gfvizzm6psspcvlhkxligdf9j1whrgzkg7ww520lk3z8lnnd"; depends=[bit64 data_table digest futile_logger jsonlite plyr RCurl]; }; @@ -9366,7 +9477,7 @@ in with self; { fbst = derive2 { name="fbst"; version="2.1"; sha256="15d73hngw8607la36cpl5z7ac18cpwkmqzp67ga2c5n94z2h8asc"; depends=[bayestestR cubature ks rstanarm viridis]; }; fc = derive2 { name="fc"; version="0.1.0"; sha256="0x41xfchy499kz0qi7fp12vpkbcddprv19mmk48lxzavv4f5avfh"; depends=[codetools]; }; fca = derive2 { name="fca"; version="0.1.0"; sha256="0jcdyylb0byz70k3kypa2mdd5sc5nq81jfbpljjg2amczq7s5wzy"; depends=[]; }; - fcaR = derive2 { name="fcaR"; version="1.2.0"; sha256="04hmyndadrm6bs5vxbyh9wii6xm3vw71dy06q5b69x2344y3p5a9"; depends=[forcats fractional glue magrittr Matrix POSetR purrr R6 Rcpp registry settings stringr tibble tikzDevice]; }; + fcaR = derive2 { name="fcaR"; version="1.2.1"; sha256="07p6jvciawx0n11q6vqibqvwp8y1336wvpbw0imisw2ksw6vhdwa"; depends=[forcats fractional glue magrittr Matrix POSetR purrr R6 Rcpp registry settings stringr tibble tikzDevice]; }; fcci = derive2 { name="fcci"; version="1.0.1"; sha256="02q6q0q7fqdbp20fdf33jbkh0aj9nzl6dwysr0nn146ciz3vqgin"; depends=[assertthat Rcpp rlang]; }; fcfdr = derive2 { name="fcfdr"; version="1.0.0"; sha256="16mnpr64x00qwbgq9pw69k941yb0i7mx7ncsilahicprxqyfpfww"; depends=[bigsplines cowplot data_table dplyr fields ggplot2 hexbin Hmisc locfdr MASS polyCub spatstat_geom]; }; fcirt = derive2 { name="fcirt"; version="0.1.0"; sha256="1wiyiz51mkm5kd95xmpvlwng51awpp4y133dd5q88mnafrxyij1h"; depends=[BH numDeriv Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; @@ -9377,22 +9488,23 @@ in with self; { fctbases = derive2 { name="fctbases"; version="1.1.1"; sha256="19ay3n7m9r72szzxlyd9yrpgajfl8dy75f54cfvmj130p9sv3jfq"; depends=[Rcpp RcppArmadillo]; }; fcuk = derive2 { name="fcuk"; version="0.1.21"; sha256="1sb7p1m5qb88028mrw95lhh8l7dxj696hjh88nfsdpnscryknfpv"; depends=[magrittr purrr stringdist tibble]; }; fdANOVA = derive2 { name="fdANOVA"; version="0.1.2"; sha256="1pycq5a4czqzi8wcfmlc9ncg827j7n0qxyj90wcv39nbcrnl3da1"; depends=[doBy doParallel fda foreach ggplot2 magic MASS]; }; - fda = derive2 { name="fda"; version="6.0.5"; sha256="1wdq35acxavarh7qrxxmdpcjc9jcs56mp3p9rbb4qa35ziv5fi0l"; depends=[deSolve fds]; }; + fda = derive2 { name="fda"; version="6.1.4"; sha256="0595887hv80blx9aq63qnmc9vr022p21zqhgp2wmdjvq1g68x0g2"; depends=[deSolve fds]; }; fda_usc = derive2 { name="fda.usc"; version="2.1.0"; sha256="1s13zssm7x3hg1k928r5jkjz35bflb1nzz4c7b4xr0x1j8qg3d60"; depends=[doParallel fda foreach iterators kSamples MASS mgcv nlme]; }; fdaACF = derive2 { name="fdaACF"; version="1.0.0"; sha256="0qrsj25p6h2xg25v0ayk8x31d4whyy0mpf2xdpw3hcwhb71mbfhn"; depends=[CompQuadForm fda pracma vars]; }; fdaMixed = derive2 { name="fdaMixed"; version="0.6"; sha256="0hyhb67qvvhyq68k5h4ffvsl4lmw66nfy5l14kwxnn42h3b810sc"; depends=[Formula Rcpp RcppArmadillo]; }; fdaMocca = derive2 { name="fdaMocca"; version="0.1-1"; sha256="0y54d8a38d5hjnh8iw2r4zl2d2xz72hjddhxbar91jk6zf3kzpsy"; depends=[doParallel fda foreach Matrix mvtnorm]; }; fdaPDE = derive2 { name="fdaPDE"; version="1.1-16"; sha256="0z5plkig2df8scvx07wmd4f0w0pp1ddfafg70shcic6lahg2xk27"; depends=[Matrix plot3D Rcpp RcppEigen rgl]; }; fdaPOIFD = derive2 { name="fdaPOIFD"; version="1.0.3"; sha256="0c773hidrg69gs9lzdcwf4hzzmid3kwf73pw6c807y1b4lgiai20"; depends=[FastGP fdapace ggplot2 magrittr MASS patchwork reshape2 tibble]; }; - fdacluster = derive2 { name="fdacluster"; version="0.1.1"; sha256="1rr1hcnpzya53h09p4yc1784kzrw7wlcylax4x2pdp1grzf1wakq"; depends=[dplyr ggplot2 magrittr nloptr purrr Rcpp RcppArmadillo tibble tidyr]; }; + fdacluster = derive2 { name="fdacluster"; version="0.2.2"; sha256="0xmmjpizdv2h38fskz420zyk3wvrjpfkh2ljsx7mvb3v7sfljr6y"; depends=[cli cluster dbscan dplyr fdasrvf forcats furrr ggplot2 lpSolve nloptr progressr purrr Rcpp RcppArmadillo rlang tibble tidyr withr]; }; fdaconcur = derive2 { name="fdaconcur"; version="0.1.0"; sha256="1xlhn9di70z49y79l2pwffqykmz8j5p09hihhf6rsbsrjy42nwbv"; depends=[fdapace]; }; fdadensity = derive2 { name="fdadensity"; version="0.1.2"; sha256="1i2xzchlsixgjzyfmbv547sy6mq90xrnyc2kpd11wwfgfrpj1ix3"; depends=[fdapace Rcpp]; }; fdaoutlier = derive2 { name="fdaoutlier"; version="0.2.0"; sha256="1jpd9mszd0grn7rwi3dmgl6l5dggwsnz1kyljz2gcfm2wck2zhbz"; depends=[MASS]; }; fdapace = derive2 { name="fdapace"; version="0.5.9"; sha256="16j731d7y290xk5qvld59pb78mrch5i61szcf3j79kkirmz6hh8f"; depends=[Hmisc MASS Matrix numDeriv pracma Rcpp RcppEigen]; }; fdapaceShiny = derive2 { name="fdapaceShiny"; version="1.0.5"; sha256="1cy1rcmsyr78q3wqkaw3lvqzlr07n7djrqqpwm3y8xz60fybs8p6"; depends=[bs4Dash config dplyr DT fdapace ggplot2 golem htmltools magrittr plotly purrr reshape2 shiny shinyjs shinyWidgets stringr tidyr]; }; - fdasrvf = derive2 { name="fdasrvf"; version="2.0.1"; sha256="1ym5my1kfynb3hh9dd6mxhwsb17ph51fd74mf54v4jpaan6g5x4a"; depends=[cli coda doParallel fields foreach lpSolve Matrix mvtnorm Rcpp RcppArmadillo rlang tolerance viridisLite]; }; + fdasrvf = derive2 { name="fdasrvf"; version="2.0.2"; sha256="1q7zk9cic1lbpsgv52gpz0y8ifb4ac0654n7imfv2nj4d2vnz0lb"; depends=[cli coda doParallel fields foreach lpSolve Matrix mvtnorm Rcpp RcppArmadillo rlang tolerance viridisLite]; }; fdatest = derive2 { name="fdatest"; version="2.1.1"; sha256="13sd85ypx2z07qxsqhsbc5w0yasf01yw06qx91ymh0yr8538x3x3"; depends=[fda]; }; fddm = derive2 { name="fddm"; version="0.5-2"; sha256="0sh3qnsakl02wpzwhxyqdikn7xx5crh401w3d149ww2jxvagjmsf"; depends=[Rcpp]; }; + fdicdata = derive2 { name="fdicdata"; version="0.1.0"; sha256="1zz8wd124bbjn2fjllq8hc00r475w96bcaphcgxbqr9hfzzjpg2f"; depends=[dplyr httr yaml]; }; fdm2id = derive2 { name="fdm2id"; version="0.9.8"; sha256="1j6cbgvkf6glx1c77pqzbk2qbii128ycgm3x75k3qq840b2ma0cc"; depends=[arules arulesViz FactoMineR mclust nnet pls]; }; fdq = derive2 { name="fdq"; version="0.12"; sha256="198nsyzv0ni2mjx12wik58c7z5vrc1mfk80k3iv94dz1iq9fprqf"; depends=[data_table Fgmutils ggplot2 randomcoloR sqldf]; }; fdrDiscreteNull = derive2 { name="fdrDiscreteNull"; version="1.4"; sha256="1lwznpwfnhhv0h7qwy9jc7li752bq7hgmkh86qzyqz7k18zgx4iw"; depends=[MCMCpack qvalue]; }; @@ -9423,6 +9535,7 @@ in with self; { fermicatsR = derive2 { name="fermicatsR"; version="1.4"; sha256="1587f67fypj22rdi1319zq765lcc9z518bzl1jr4lz6c8lrzfm9i"; depends=[]; }; ferrn = derive2 { name="ferrn"; version="0.0.2"; sha256="0yxw18yzj5j2fpj4rf9flmmng4s2ldgx4yaywa2hrclbnl43c578"; depends=[dplyr geozoo gganimate ggforce ggplot2 ggrepel magrittr purrr rlang scales stringr tibble tidyr tourr]; }; fertilmodel = derive2 { name="fertilmodel"; version="1.1"; sha256="0q0mf8n3fc53bqjsv5c4mcfm4vjhyy2hw8rh1bsjsj71xmih50a4"; depends=[quadprog]; }; + fetch = derive2 { name="fetch"; version="0.1.2"; sha256="06jwa4rkjkiylqfnkvvvk2g72m8889hm8w2rk36ggji0vy2cdywz"; depends=[crayon foreign haven readr readxl tibble]; }; fetchGoogleAnalyticsR = derive2 { name="fetchGoogleAnalyticsR"; version="0.1.0"; sha256="12s18jicx9rd5dhc8l7hm09lr71nhz6k72j3w4c1j5ds9h522krg"; depends=[jsonlite]; }; fetchSalesforceR = derive2 { name="fetchSalesforceR"; version="0.1.0"; sha256="1826i031wndasgcxxa0bh88vp1r49flzphyfk79pixvlrfjn6gi8"; depends=[jsonlite]; }; ff = derive2 { name="ff"; version="4.0.9"; sha256="0krwxq4985x3n5mzx8i9smwpkd5sifbfgy9z7ikwk84734km683j"; depends=[bit]; }; @@ -9455,7 +9568,7 @@ in with self; { figma = derive2 { name="figma"; version="0.2.0"; sha256="0031sz7nbnlhv9iqaandq9sscxsy29p82s3c63z89jin4dkfjq4x"; depends=[dplyr httr purrr rlang tibble tidyr]; }; figpatch = derive2 { name="figpatch"; version="0.2"; sha256="0sy63131al6z0hlhpb11aphlxdigb0pqk9bq9mxc9nbc59036jjq"; depends=[ggplot2 magick magrittr patchwork]; }; figuRes2 = derive2 { name="figuRes2"; version="1.0.0"; sha256="1s1bvhgzczkpxfmi1cyz4cfvpxvq28fm5867a4w5q0wpjcbhlma4"; depends=[ggplot2 gridExtra gtable plyr reshape2 scales stringr survival]; }; - file2meco = derive2 { name="file2meco"; version="0.5.0"; sha256="04rvmkw9b640ras11z8na9ac8kddrdphbjhq8il3pyh0jrf15yvh"; depends=[ape dplyr magrittr Matrix microeco rhdf5 tidyr yaml]; }; + file2meco = derive2 { name="file2meco"; version="0.6.0"; sha256="02kbpyfzr98ra55mbw7l9d1haz8p97fwbn5knglz7875b5knqx4b"; depends=[ape dplyr magrittr Matrix microeco rhdf5 tidyr yaml]; }; filearray = derive2 { name="filearray"; version="0.1.5"; sha256="0s7qy4rf02i7r6xfysdlflgk3jwqvi2zzvk8zxhnb1x1wqncmfng"; depends=[BH digest Rcpp]; }; filebin = derive2 { name="filebin"; version="0.0.5"; sha256="1k13vwppk3f3acnyz32wrjmr80x0lbdzv0sx74xr87n1kbrrv5fn"; depends=[dplyr httr janitor logger purrr stringi tibble tidyr]; }; filehash = derive2 { name="filehash"; version="2.4-5"; sha256="0b52bnsqp65s3r4aw9mvfwfnjmsrqq8ndcadwig547nn9mwy47iv"; depends=[digest]; }; @@ -9467,10 +9580,11 @@ in with self; { filesstrings = derive2 { name="filesstrings"; version="3.2.4"; sha256="1jl3jhkdjx5x00kllnkpvrlpsmzsvlgd6vhzdavd39zx4jzwjxw3"; depends=[checkmate magrittr purrr rlang strex stringi stringr withr]; }; filling = derive2 { name="filling"; version="0.2.3"; sha256="17vk0pndsc8xhgp4zy5dfyc36pzk2hm5zk6xijdy4xaf7k5j4wls"; depends=[CVXR nabor Rcpp RcppArmadillo Rdpack ROptSpace RSpectra]; }; fillr = derive2 { name="fillr"; version="1.0.0"; sha256="1gx1ihp8j90ywmm6mmmfq4jd6apxawk9s5dfw3jq0wm1c290zqpv"; depends=[]; }; + filteRjsats = derive2 { name="filteRjsats"; version="1.0"; sha256="19zi44av3f5zahinqvgz5bvgh82qrpg4r4fffwjh8a09s975q5mg"; depends=[broman dplyr lubridate rerddap stringr tidyr]; }; filterNHP = derive2 { name="filterNHP"; version="0.1.2"; sha256="0kk6548nr5786ywa83v8by4c1n7ljh9sy4fshpfqizp49fv9zv22"; depends=[data_tree rclipboard shiny shinyBS shinyjs shinyWidgets]; }; finalfit = derive2 { name="finalfit"; version="1.0.6"; sha256="16jbmzs5hx328vvggk5g3q5rmyaf82dmxgifjv28w2lb80ryjay1"; depends=[bdsmatrix boot broom dplyr forcats GGally ggplot2 gridExtra lme4 magrittr mice pillar pROC purrr scales stringr survival tidyr tidyselect]; }; - finalsize = derive2 { name="finalsize"; version="0.1"; sha256="0ir5xgr4qc0bl5c3gl06afcvbkhixaadwlyh0np5fmzlfsl8mpv1"; depends=[Rcpp RcppEigen]; }; - finbif = derive2 { name="finbif"; version="0.8.0"; sha256="1iw5lcp8phm71fmr8lgj16wh1g3vijyzds4kwfvpdjrgkn2658ya"; depends=[digest httr lubridate lutz]; }; + finalsize = derive2 { name="finalsize"; version="0.2.0"; sha256="18nyyl8c121kfr22vanvgbma627w98v39d4n34kr8hd8iw8jx5lx"; depends=[checkmate Rcpp RcppEigen]; }; + finbif = derive2 { name="finbif"; version="0.9.0"; sha256="0d030kf7vl22x3amsyhj418a8vamas7d8c9g598diwcyv37b02y9"; depends=[digest httr lubridate lutz]; }; finbipartite = derive2 { name="finbipartite"; version="0.1.0"; sha256="0sws39nya8y7v78v4nlaz5g2nj4sgq5n5iwhfkyyq6h87slw2h8c"; depends=[CVXR MASS mvtnorm progress quadprog spectralGraphTopology]; }; finch = derive2 { name="finch"; version="0.4.0"; sha256="0q7riaxms460c6z2gb8i0q4pb348bnvry46bjd7pb9mh8fnl1i8b"; depends=[data_table digest EML hoardr xml2]; }; findInFiles = derive2 { name="findInFiles"; version="0.4.0"; sha256="1saxi8l4006wwxrw18g7wx0pj7l427a2rnb723k0irlhvq0icgwq"; depends=[crayon htmlwidgets shiny stringi stringr tibble vctrs]; }; @@ -9479,13 +9593,14 @@ in with self; { findR = derive2 { name="findR"; version="0.2.1"; sha256="1a7cf6kd7i2l4ffr2b17nb9xnpsjhf6fcwpjy06r0qgcapnfp54b"; depends=[pdftools stringr]; }; findpython = derive2 { name="findpython"; version="1.0.8"; sha256="1dydchid5mc79253v5b86bnbg3rm78w0hs586c1rr56lmz5r12hg"; depends=[]; }; findviews = derive2 { name="findviews"; version="0.1.3"; sha256="1l1yhw5hvrn0rpkdsch8m69d2q5284jwccvv7r4ia4m0iqjfipj7"; depends=[ggplot2 gridExtra scales shiny]; }; - finetune = derive2 { name="finetune"; version="1.0.1"; sha256="1zdipi15sk8scwgyixci4jvccvmlz3lwyra206cwiklbi2rg9720"; depends=[cli dials dplyr ggplot2 parsnip purrr rlang tibble tidyr tidyselect tune vctrs workflows]; }; + finetune = derive2 { name="finetune"; version="1.1.0"; sha256="1axcfjkdhpfx60rf14ywizmzxsl8ac5amqx8s2lv8hb2ahqs13yi"; depends=[cli dials dplyr ggplot2 parsnip purrr rlang tibble tidyr tidyselect tune vctrs workflows]; }; fingerPro = derive2 { name="fingerPro"; version="1.1"; sha256="1a1lj8gyrbgcg8hr03cj2bjzlaafddspri7abc83ys1raqwd4j68"; depends=[car GGally ggplot2 gridExtra klaR MASS plyr Rcmdr Rcpp RcppGSL RcppProgress reshape rgl scales]; }; fingerprint = derive2 { name="fingerprint"; version="3.5.7"; sha256="04jcwkydjrs31pia6kq8z2n9s54im950q08hs2ay15xjxxkmb8ic"; depends=[]; }; fingraph = derive2 { name="fingraph"; version="0.1.0"; sha256="130kfhxxxf6cg7ww71nfrwhwrkp52v7zc0qarpjv84826k00cpcq"; depends=[MASS mvtnorm progress spectralGraphTopology]; }; finiteruinprob = derive2 { name="finiteruinprob"; version="0.6"; sha256="0z4l0crymh58chxniqq70fqmvi6f5jkgvz72vbc7s3l9lrrapgr3"; depends=[numDeriv sdprisk]; }; finity = derive2 { name="finity"; version="0.1.4.1"; sha256="0xs3vx0vj165hj4dq8ivrdf6fcvj23zhp2ai79rgpyb5rr5ndkvc"; depends=[BH Rcpp RcppArmadillo stabledist]; }; finnishgrid = derive2 { name="finnishgrid"; version="0.1.0"; sha256="0gndrllz3y7yqrg5vw6ba7dg7hn4w3085rpy7h9hdd8swxqfvlc6"; depends=[httr jsonlite]; }; + finnts = derive2 { name="finnts"; version="0.2.4"; sha256="0h1adlwbx3a4ldhw2s13v3ai3kij0da7bh502g045khc39dgg2iw"; depends=[cli Cubist dials doParallel dplyr earth foreach generics glmnet gtools hts kernlab lubridate magrittr modeltime modeltime_resample parsnip plyr purrr recipes rsample rules stringr tibble tidyr tidyselect timetk tune workflows]; }; finreportr = derive2 { name="finreportr"; version="1.0.4"; sha256="145idg2c6qmqp29afalnhxxzky08j21dmm05mp3zf63aq9mq41d4"; depends=[curl dplyr httr rvest XBRL xml2]; }; fipio = derive2 { name="fipio"; version="1.1.1"; sha256="0wvx64nazbv44hdsj3q6mz70m81asmwgxp28sapaaal36l180jfs"; depends=[]; }; fipp = derive2 { name="fipp"; version="1.0.0"; sha256="0wr3czwsqwa1bpdcjk0r1739vjanxc0fv0vnl3r5lgykrbhw9v3r"; depends=[matrixStats Rcpp RcppArmadillo]; }; @@ -9495,19 +9610,19 @@ in with self; { fishdata = derive2 { name="fishdata"; version="1.0.1"; sha256="0hskmw93pyrm5wxn1dw8vi18v11jnf03yx375hjkk38hcfnp6n5k"; depends=[]; }; fisheye = derive2 { name="fisheye"; version="0.1.0"; sha256="0yrgr0nhnn768q6hc2dsjz7y3n7p7ci0rdfqsickafgv2srdrh83"; depends=[sf]; }; fishkirkko2015 = derive2 { name="fishkirkko2015"; version="1.0.0"; sha256="1s8vsf604rc6qk0gahn61p3q8p9dhsbq14wsmrin7icq2xgl3y81"; depends=[]; }; - fishmethods = derive2 { name="fishmethods"; version="1.12-0"; sha256="1iy9df9wzr660byksga1j6kg9p8n45xf09iavpvya2cg9kw95gx3"; depends=[boot bootstrap data_table lme4 MASS numDeriv TMB]; }; + fishmethods = derive2 { name="fishmethods"; version="1.12-1"; sha256="0ladr3rl55v10kh0556725gygiw338mj3ncpifaij80rph99y66v"; depends=[boot bootstrap data_table lme4 MASS numDeriv TMB]; }; fishtree = derive2 { name="fishtree"; version="0.3.4"; sha256="00g8p885z5xcqp2chncb177s0l6lab2f069szj861z9dyf93xx4z"; depends=[ape jsonlite memoise rlang]; }; fishualize = derive2 { name="fishualize"; version="0.2.3"; sha256="0iygh6mlxlsk6yq26i5rry9gh6qkrn5sbgsa2wpdxmm1ip1nzml0"; depends=[curl downloader dplyr ggplot2 gridExtra httr magrittr png rlang scales stringr tidyr]; }; fit_models = derive2 { name="fit.models"; version="0.64"; sha256="1nk4x2q8cv79zcls61saf627ac0fci6jcrd6lmzk61asm2zhc27p"; depends=[lattice]; }; fitConic = derive2 { name="fitConic"; version="1.2"; sha256="0mwnbq32mpj8d4127jwb283mn3gs4hm0klwk9prsrfkdnhqai41i"; depends=[pracma]; }; - fitHeavyTail = derive2 { name="fitHeavyTail"; version="0.1.4"; sha256="1cb7cnir7fpvf8j8abw8imz6zxg4dznjmkyrbcx0yr09qvjal81b"; depends=[ghyp ICSNP mvtnorm numDeriv]; }; + fitHeavyTail = derive2 { name="fitHeavyTail"; version="0.2.0"; sha256="18iqqn33sznw4c77rl6ryk57grary350ygr58vg062jg1hyxybrg"; depends=[ghyp ICSNP mvtnorm numDeriv]; }; fitODBOD = derive2 { name="fitODBOD"; version="1.5.0"; sha256="0nr2ljnk2glrayainm4dnpyw2bp8vfyjws2p7nry6x4f8vvw9y0v"; depends=[bbmle hypergeo]; }; fitPS = derive2 { name="fitPS"; version="0.2-5"; sha256="1gakwbc1mxagmqgpm55dmdfwklcl8yrirpq0zbrfll8m1ssdi64l"; depends=[doParallel dplyr foreach Hmisc iterators knitr ks pbapply Rdpack readxl VGAM]; }; fitPoly = derive2 { name="fitPoly"; version="3.0.0"; sha256="0ws1vsh8if9i9i7820ak32b0bysjc0z09nbrk17qpms0b11cpc3g"; depends=[foreach]; }; fitbitScraper = derive2 { name="fitbitScraper"; version="0.1.8"; sha256="0b4d7xw6inp6l1dkfwyrzxwg4vspp4vzlwrhv14ajxrqz6irj8a0"; depends=[httr jsonlite stringr]; }; fitbitViz = derive2 { name="fitbitViz"; version="1.0.5"; sha256="04kpx6h4kj0b92ick5kkihs2x9fjycxsi8fky8jpwdvvrivnk620"; depends=[base64enc data_table ggplot2 ggthemes glue hms httr jsonlite leafgl leaflet lifecycle lubridate magrittr paletteer patchwork raster rayshader reshape2 rstudioapi scales sf terra varian viridis XML]; }; fitbitr = derive2 { name="fitbitr"; version="0.3.0"; sha256="17qgjd7w0f1iyfwm7mn7m4w8lzfgrbqhh8ngwkg91n9mpz5hyh3s"; depends=[dplyr httr janitor jsonlite lubridate magrittr purrr rlang tibble tidyr]; }; - fitdistrplus = derive2 { name="fitdistrplus"; version="1.1-8"; sha256="0nhgjvwya95v6b9khbsgp44lw10xg35w61lmka1v6wq7yh827izk"; depends=[MASS survival]; }; + fitdistrplus = derive2 { name="fitdistrplus"; version="1.1-11"; sha256="0gdm06anjmihfj1d0yiqy36d887kmc0d8553pjl1f90bf4mly9r6"; depends=[MASS survival]; }; fitlandr = derive2 { name="fitlandr"; version="0.1.0"; sha256="077b97gwlzxmd4i4rsxrgqzlnwn7zf0y0wgcbihck1wvh7gjiara"; depends=[cli dplyr furrr future_apply ggplot2 glue magrittr MASS numDeriv plotly R_utils Rfast rlang rootSolve simlandr SparseVFC tidyr]; }; fitmix = derive2 { name="fitmix"; version="0.1.0"; sha256="1z7jgxz119lkyggmgpykcslv56z1i7pnbp872jkdni77sx94x89c"; depends=[]; }; fitode = derive2 { name="fitode"; version="0.1.1"; sha256="18c5sgvkv9w370zli2kc2gdcbpnb3f5s3ivp0zyd6rqlwdy0c6cg"; depends=[bbmle coda Deriv deSolve MASS mvtnorm numDeriv]; }; @@ -9518,9 +9633,9 @@ in with self; { fitzRoy = derive2 { name="fitzRoy"; version="1.3.0"; sha256="1q728dn6s89f7zy4s1hhixqrvqi27gc225i6isiq5lk9md7pgydx"; depends=[cli dplyr glue httr jsonlite lifecycle lubridate magrittr progress purrr readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; fivethirtyeight = derive2 { name="fivethirtyeight"; version="0.6.2"; sha256="0nja8zbbkrxrvznyi1c38yzv6djx58ac5y4l1nkf07ph5d9i3k81"; depends=[]; }; fixedTimeEvents = derive2 { name="fixedTimeEvents"; version="1.0.1"; sha256="18cqbxrs69p60anvii22mhqkwh5y2mxapmznff9g7j1j6h4h62lr"; depends=[]; }; - fixedincome = derive2 { name="fixedincome"; version="0.0.4"; sha256="1h3gh6bbb2sdbqwx5p53j3c6k28az1a7mvxfh8754lx24h2igfgk"; depends=[bizdays ggplot2 scales]; }; fixerapi = derive2 { name="fixerapi"; version="0.1.6"; sha256="0ikf8dn0l9c9gshp4bph3wasl0bh6lfybinc8n1rvb202231hmgb"; depends=[jsonlite tibble tidyr]; }; fixest = derive2 { name="fixest"; version="0.11.1"; sha256="1q771z9m7sdzq4pbx4fwcz26d4cbjkmqjrdac0wnr9pbv81y3z0k"; depends=[dreamerr nlme numDeriv Rcpp sandwich]; }; + fixr = derive2 { name="fixr"; version="0.1.0"; sha256="074dr1l3bw8v1lrih1mc51dmx02kambis04r9jpx64vnpajjfv8p"; depends=[httr RCurl xml2]; }; fixtuRes = derive2 { name="fixtuRes"; version="0.1.3"; sha256="1vmdbx1pfk4kcxq5q5hj4v6rz403xw66gpg6zpvrxkpcgkx2dwyz"; depends=[checkmate dplyr glue lubridate purrr R6 rlang stringi yaml]; }; fizzbuzzR = derive2 { name="fizzbuzzR"; version="0.1.1"; sha256="119gbi9y4n8r52hk9vj7zf795dv9xnk7lnngljjcd7ydnhygwd4h"; depends=[]; }; flacco = derive2 { name="flacco"; version="1.8"; sha256="15h2q9xgddy7gw6r52c2nk618f3z1mjn4xz9pzdvhm1d3kqggwa4"; depends=[BBmisc checkmate mlr]; }; @@ -9532,9 +9647,8 @@ in with self; { flare = derive2 { name="flare"; version="1.7.0.1"; sha256="1xvrbvq2y7zfp98ijal3z8y1w2xbzfcdykzw4pqc3mnh0qrhq2d5"; depends=[igraph lattice MASS Matrix]; }; flashCard = derive2 { name="flashCard"; version="0.1.0"; sha256="1l1g3hy0gchsmdj04d065rl71hkvxydyqsmav5qwxyz2mdkknkhi"; depends=[htmlwidgets jsonlite]; }; flashClust = derive2 { name="flashClust"; version="1.01-2"; sha256="0l4lpz451ll7f7lfxmb7ds24ppzhfg1c3ypvydglcc35p2dq99s8"; depends=[]; }; - flashlight = derive2 { name="flashlight"; version="0.8.0"; sha256="0gzpq3cmb8kspjhk74qrhlkdj8fjw75sywnwvkwbvy3cp11hffp6"; depends=[cowplot dplyr ggplot2 MetricsWeighted rpart rpart_plot tidyr tidyselect withr]; }; + flashlight = derive2 { name="flashlight"; version="0.9.0"; sha256="0nyxx7zrqw8fgy1n81n30m80z7xwkydnhmxj6c22mq83md08rd8c"; depends=[cowplot dplyr ggplot2 MetricsWeighted rlang rpart rpart_plot tibble tidyr tidyselect withr]; }; flashr = derive2 { name="flashr"; version="0.1.1"; sha256="0cvpjyjylcz61jmmar2aynvcqh7m41ljkdqmgwmiwiy26qi6clqn"; depends=[cli curl gh httr memoise revealjs rmarkdown testthat]; }; - flatness = derive2 { name="flatness"; version="0.1.4"; sha256="0zl1x4wn5wgm9aksb96ghh395z7fz1awglfjdiid4ak5ssbqgsbq"; depends=[data_table lattice xtable]; }; flatr = derive2 { name="flatr"; version="0.1.1"; sha256="10l98a3f57wahfpdqxj70r25zfhk4vzzd014pdnriy458yrfd7rw"; depends=[dplyr magrittr tibble]; }; flattabler = derive2 { name="flattabler"; version="1.2.0"; sha256="156q3af7bmqcaxvl35634ph8dzs6gdjxqqkgwi214kj2pywpqg2a"; depends=[dplyr readxl stringr tibble tidyr]; }; flatxml = derive2 { name="flatxml"; version="0.1.1"; sha256="1qsiqi8aszk9djlhysf6lcm41dq4pcw5jv6mdvb1mgxni7g3sgfv"; depends=[crayon httr RCurl xml2]; }; @@ -9555,7 +9669,7 @@ in with self; { flifo = derive2 { name="flifo"; version="0.1.5"; sha256="03x66l3ryrjvwbxxd0ncjrb5w9kc7fswmp5psb1cb7r87f395gm3"; depends=[bazar pryr]; }; flightplot = derive2 { name="flightplot"; version="0.1.0"; sha256="1276lsahr9kdsvp1ismm3b5syvhfr7ifizzd79f8w1h2rjblva8x"; depends=[dplyr geosphere ggplot2 ggrepel magrittr rlang sf tibble]; }; flightsbr = derive2 { name="flightsbr"; version="0.2.1"; sha256="10bsfn7a8zzsrf2fr9svsfx50dv1vlivq8dd82yn18i1vf1hzaib"; depends=[data_table httr parzer pbapply rvest]; }; - flimo = derive2 { name="flimo"; version="0.1.3"; sha256="0xgxbcik40fjqzz55wraljcp8j1pvhm5zzgin7l50xk24yyiyvrh"; depends=[ggplot2 JuliaConnectoR]; }; + flimo = derive2 { name="flimo"; version="0.1.5"; sha256="00l0w9z1j2yy4sl1fly7lw4rrdwcwnb26va2d5vsvjldwcmsx5pd"; depends=[ggplot2 JuliaConnectoR]; }; flintyR = derive2 { name="flintyR"; version="0.1.0"; sha256="1md0p3i9lny5sn1jjh8ss6bw4w7q8ydi6kh5smjbbgbn86qlcvwy"; depends=[assertthat doParallel foreach Rcpp RcppArmadillo testthat]; }; flip = derive2 { name="flip"; version="2.5.0"; sha256="08x5hwxaxbgc745gblja7gcy0b5wbp7jf90lkha75zl5cc9iyksl"; depends=[cherry e1071 plyr someMTP]; }; flipbookr = derive2 { name="flipbookr"; version="0.1.0"; sha256="0ls51risk3qn5fagw31i2kibrxk7xk3845a1cccd83sc4c8ilgjx"; depends=[dplyr glue knitr magrittr purrr rmarkdown stringi stringr tibble tidyr]; }; @@ -9571,6 +9685,7 @@ in with self; { flora = derive2 { name="flora"; version="0.3.4"; sha256="17drlfvvrndal4cf5nw20xb9viybagvb4vll1kxdrhvsvfz5yap6"; depends=[dplyr httr jsonlite stringdist]; }; flowTraceR = derive2 { name="flowTraceR"; version="0.1.0"; sha256="1nl7yfzsh3bhqdildb77wmnapich4xn6y2j8rlmrb4w7mq9jnhba"; depends=[comprehenr dplyr ggplot2 magrittr stringr tibble tidyr]; }; flowr = derive2 { name="flowr"; version="0.9.11"; sha256="1cbbfrvgzqclvbhy20vjwgxbvnn3ljh0k1k54jf2si10bfw3zzi5"; depends=[diagram params readr whisker]; }; + flps = derive2 { name="flps"; version="0.1.0"; sha256="0kcxc425xg4y44j2rd1h6w5wf7dq11j9vvlf0jcs3irbr49q7y3g"; depends=[ggplot2 MASS mirt mvtnorm Rcpp rstan]; }; flsa = derive2 { name="flsa"; version="1.5.2"; sha256="0c6cdf3hkl3s5yqwbn1qhqhyaw5pgd83a5bc30wbzq03hk7rh9ks"; depends=[]; }; fluoSurv = derive2 { name="fluoSurv"; version="1.0.0"; sha256="1dv4lf7k28bih2qqkpy15f7d14ibxk48p3z6sj3dj5yvh25mhv81"; depends=[]; }; fluspect = derive2 { name="fluspect"; version="1.0.0"; sha256="0j80wx00s8ljqg1qaqw66rj7kxhhk438hb0syv0lr9vld03cxy2w"; depends=[pracma]; }; @@ -9598,7 +9713,7 @@ in with self; { fomantic_plus = derive2 { name="fomantic.plus"; version="0.1.0"; sha256="0zj50v036zal51b7744bp62c1bzjwdvzw1qwy0lyhgjxly6kb2hy"; depends=[htmltools jsonlite shiny shiny_semantic]; }; fontBitstreamVera = derive2 { name="fontBitstreamVera"; version="0.1.1"; sha256="0nipdlmhjv1wr3aidcl97nk6mppdkd65krgwqnhdsnv0jpfv761j"; depends=[]; }; fontLiberation = derive2 { name="fontLiberation"; version="0.1.0"; sha256="1w1rl0g4ayyp8lwppmz9yzj9cizg7i50g07216jkm1q5w0is9pmc"; depends=[]; }; - fontawesome = derive2 { name="fontawesome"; version="0.5.0"; sha256="02z9jqvwn8bhwbkxlx9f42x4qlz7akmmjw0xi0kdd0iylcbv85s1"; depends=[htmltools rlang]; }; + fontawesome = derive2 { name="fontawesome"; version="0.5.1"; sha256="0v2ngvg4nm000ccgfjvcx809igb8wv7ra85p881jqbldxvibpszl"; depends=[htmltools rlang]; }; fontcm = derive2 { name="fontcm"; version="1.1"; sha256="1z6b4qdgj5vhvjqj90sm1hp0fffi1vxzvq71p0flxybzyb7d15la"; depends=[]; }; fontquiver = derive2 { name="fontquiver"; version="0.2.1"; sha256="0qv3i9hch7cygl9983s3w68wfh5qvym2jkm52pp06p6mq8a1i1wm"; depends=[fontBitstreamVera fontLiberation]; }; foodingraph = derive2 { name="foodingraph"; version="0.1.0"; sha256="0v40yk7lx0zxvpd3vz48h5gzx8ds8v3l12i2r7v9safgfvip6fvn"; depends=[cowplot dplyr ggplot2 ggraph igraph labeling magrittr minerva rlang stringr tibble tidyr viridis]; }; @@ -9616,6 +9731,7 @@ in with self; { forecTheta = derive2 { name="forecTheta"; version="2.6.2"; sha256="0xw5xl6famx0wy68a32f8vgqk02lkymvxq082yp16giidvzvqjwd"; depends=[forecast tseries]; }; forecast = derive2 { name="forecast"; version="8.21"; sha256="1hn60p88jq9qprgwgh4ymb53fri71imad6kasycv6gwxb9wk3lgx"; depends=[colorspace fracdiff generics ggplot2 lmtest magrittr nnet Rcpp RcppArmadillo timeDate tseries urca zoo]; }; forecastHybrid = derive2 { name="forecastHybrid"; version="5.0.19"; sha256="1pg3wbmlagr01j3nikfh4dvh5lvbdfp7069wx9h9xsl7d4481ly1"; depends=[doParallel foreach forecast ggplot2 purrr thief zoo]; }; + forecastLSW = derive2 { name="forecastLSW"; version="1.0"; sha256="0gwc0kfcl2qxfxnzxw65ij83njw8x6bxxb63sfajcm71kfbnsipa"; depends=[forecast locits lpacf wavethresh]; }; forecastML = derive2 { name="forecastML"; version="0.9.0"; sha256="01lqbmdmd6sk5xka19i9d466bzihxgp652v0kr13r82b591f67vq"; depends=[data_table dplyr dtplyr future_apply ggplot2 lubridate magrittr purrr rlang tibble tidyr]; }; forecastSNSTS = derive2 { name="forecastSNSTS"; version="1.3-0"; sha256="0p47x7ic2ib7znqbp8br4b2ci75f5w8x413z9g4n30m002p7irp1"; depends=[Rcpp]; }; forecasteR = derive2 { name="forecasteR"; version="1.1.6"; sha256="1lqlmiwr34rim50y9vxinf23xi9gj0y6p1y1wp3vlfycdkd0lca5"; depends=[colourpicker config DT echarts4r forecast golem htmltools htmlwidgets lubridate rlang scales shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs stringr]; }; @@ -9624,12 +9740,13 @@ in with self; { forestError = derive2 { name="forestError"; version="1.1.0"; sha256="1dk19sgx760ph464cya4gxb1i3rpnydnhrbqyb25jja0dryjapcm"; depends=[data_table purrr]; }; forestHES = derive2 { name="forestHES"; version="1.0-1"; sha256="05l04ly3l8xkdz3rnnrfa4y0wfmh1am2ixbz1vfarnqkc0zppwpj"; depends=[]; }; forestRK = derive2 { name="forestRK"; version="0.0-5"; sha256="0zm0q7bckmjl1j3yh5pw4r6rq64rfmzjvmvqniza5691jagjz60m"; depends=[ggplot2 igraph knitr mlbench partykit pkgKitten rapportools]; }; + forestat = derive2 { name="forestat"; version="1.0.1"; sha256="0m2f0s9153y2z4z6mi1sgp21blaamj1nshxdsvgf6daz38dk9cpb"; depends=[dplyr ggplot2 nlme]; }; forestecology = derive2 { name="forestecology"; version="0.2.0"; sha256="0pvh50sdiscgkshlmyngz7pkmpaz03c8x3gfjp5ir52f8710ngb7"; depends=[blockCV dplyr forcats ggplot2 ggridges glue magrittr mvnfast patchwork purrr rlang sf sfheaders snakecase stringr tibble tidyr yardstick]; }; forestinventory = derive2 { name="forestinventory"; version="1.0.0"; sha256="1v5gyx8i64zn1cinwvm86syq26vhfzw2maaiymy32fphzybwxivf"; depends=[ggplot2 plyr tidyr]; }; forestmangr = derive2 { name="forestmangr"; version="0.9.5"; sha256="1diywnrvzyvpi7ygqmb26gii6ac741c2v3zc7pk6i0y09j89pgrq"; depends=[broom car dplyr FinCal ggdendro ggplot2 ggpmisc ggthemes gridExtra magrittr miniUI minpack_lm plyr purrr rlang scales shiny systemfit tibble tidyr]; }; forestmodel = derive2 { name="forestmodel"; version="0.6.2"; sha256="0pl9r8j2qd00b9kl585b4k54kic5fvzc56i8cn3hm5yp2hrrwyws"; depends=[broom dplyr ggplot2 rlang tibble]; }; forestplot = derive2 { name="forestplot"; version="3.1.1"; sha256="0jf7sl7z963r92l5r2irvnakmbmx554vbprg51smj6qns5a6dfcj"; depends=[abind checkmate]; }; - forestploter = derive2 { name="forestploter"; version="1.0.0"; sha256="1y4934azp46xicppsrkhc2nna4wz30vawm0djinzi5fnvdg8bzis"; depends=[gridExtra gtable]; }; + forestploter = derive2 { name="forestploter"; version="1.1.0"; sha256="0mp0w2dmza5vj2wr36z59cvdhcb688din3aq1id4ha61ci0sbidv"; depends=[gridExtra gtable]; }; forestr = derive2 { name="forestr"; version="2.0.2"; sha256="1kz8f3x2dmsprj2r23gz61fpwg7n14nbjxr16x4cpixvnk427p94"; depends=[dplyr ggplot2 moments plyr tibble tidyr viridis]; }; forestry = derive2 { name="forestry"; version="0.1.0"; sha256="0q7m0mrig8z2b2z2fng58qlqa6g58xlhfzchil2dvjh6xf3qvsh8"; depends=[data_tree]; }; foretell = derive2 { name="foretell"; version="0.2.0"; sha256="18vi438n480gizfhnciw67gngvbjnmky19186b1wy75av7fgc1gp"; depends=[nloptr]; }; @@ -9638,21 +9755,21 @@ in with self; { formatR = derive2 { name="formatR"; version="1.14"; sha256="0k271w4bhlj7r9igkiyfw7d7bg30s2mn4sr4alb8f9w57wnapfjf"; depends=[]; }; formatdown = derive2 { name="formatdown"; version="0.1.1"; sha256="0hfpn7j8svv9yj1zpbszl79xshyi7kc20vv3kmp0z0r0lnv89vpg"; depends=[checkmate data_table wrapr]; }; formattable = derive2 { name="formattable"; version="0.2.1"; sha256="1vdxi0xmg019qyzjrp8bkjxciz245jcxsrkhfzd44ynqcwi4s3ag"; depends=[htmltools htmlwidgets knitr rmarkdown]; }; - formatters = derive2 { name="formatters"; version="0.4.0"; sha256="1cbaq3ym22hfpzgxf1cin8zmgmq63k7wpryfgrfah4pwa7f8svwb"; depends=[checkmate htmltools]; }; + formatters = derive2 { name="formatters"; version="0.5.0"; sha256="12bmfm2lm2x9bc1v4jr5kv96vlhnm72wbyjfzzx6j0d6cfssnl8n"; depends=[checkmate htmltools]; }; formula_tools = derive2 { name="formula.tools"; version="1.7.1"; sha256="15d3ikfmsh9zszfgfkrxb3jkipl41inm7n6bhs73kwlnklnygq2g"; depends=[operator_tools]; }; formulaic = derive2 { name="formulaic"; version="0.0.8"; sha256="1nx6a73vw2hjbnqaw8x17ghhljd6z2avxv4arz3c3785pyayhg9k"; depends=[data_table]; }; formulops = derive2 { name="formulops"; version="0.5.0"; sha256="1mkpv5xjykrhgknq0gh4yg2a3j4xb8q2d6dh0wv8zd9h59hvrzda"; depends=[]; }; forplo = derive2 { name="forplo"; version="0.2.5"; sha256="066hpd5jfs8nfd5fbxh049apd93pz8ibzr2kqlssx4c9fziwbg40"; depends=[]; }; - forrel = derive2 { name="forrel"; version="1.5.0"; sha256="0xfkhy4k19yndb360kzf2xiqfhpskdl0a6a50c214wli152x6s8l"; depends=[glue pedmut pedprobr pedtools ribd]; }; + forrel = derive2 { name="forrel"; version="1.5.2"; sha256="0aa54cvf3hfqdpixsnh54zmwgg2vvi11z7yjq597cpaqphsrbzlb"; depends=[glue pedmut pedprobr pedtools ribd]; }; forsearch = derive2 { name="forsearch"; version="3.3.0"; sha256="1k509s3mbq7fv9in2fj5amab6qb16r79ssq20h6vy489clkn1898"; depends=[Cairo formula_tools ggplot2 Hmisc nlme tibble]; }; - forstringr = derive2 { name="forstringr"; version="0.0.1"; sha256="04ib6nfqs7dfy3il7vylql056ysnlpb164w7l4iyp8hw9xy31ycx"; depends=[dplyr stringr tidyselect]; }; + forstringr = derive2 { name="forstringr"; version="0.1.1"; sha256="1qbmkszznn537cqvq30r4lxyl2f9kannfd00zlb1kq3lyb8bc823"; depends=[dplyr glue rlang stringr tidyselect]; }; fortunes = derive2 { name="fortunes"; version="1.5-4"; sha256="109ly9kpfn6hy294ava8795wy5z9l1bnl98hhhv8kn9naf4camdg"; depends=[]; }; forward = derive2 { name="forward"; version="1.0.6"; sha256="12yk2l9cjmlr9089a8qw8arpdq997c9d9nx5xsy2x76ik65r6i3l"; depends=[MASS]; }; forwards = derive2 { name="forwards"; version="0.1.3"; sha256="07374a1ak5h8q3diqyvsw3q1grqi3679w9sshf1jkhlrj7wn0dmv"; depends=[]; }; fossil = derive2 { name="fossil"; version="0.4.0"; sha256="1hbls9m8yapnfzpv9s850ixakmnan8min1ynk7dqkbpb2px85h1p"; depends=[maps shapefiles sp]; }; fossilbrush = derive2 { name="fossilbrush"; version="1.0.3"; sha256="0h5grarpk6ml07gxb3bmb93fys55f6pp4qr60fqq97zx1lg9hns4"; depends=[curl data_table igraph Matrix pbapply stringdist stringr]; }; foto = derive2 { name="foto"; version="1.0.0"; sha256="10mfxgg5f1r85cwr0jjnsa4csp1afcrjvyjvp31060nm638clcgh"; depends=[raster]; }; - foundry = derive2 { name="foundry"; version="0.12.0"; sha256="0y28vrab5nd4q1094xil6nzbcfwgkgms8dbg0gwi4qmq572489xm"; depends=[arrow httr jsonlite R6 yaml]; }; + foundry = derive2 { name="foundry"; version="0.13.0"; sha256="06mmqiaakha1xw2l5zib5nmwijjv4rjbpsx52ck7xihm6w192lss"; depends=[arrow httr jsonlite R6 yaml]; }; fourPNO = derive2 { name="fourPNO"; version="1.1.0"; sha256="0a0z2403kdh3fjb0ypjjk3m6fg77bg6m7hwb5jhlymcy2rwkay7w"; depends=[Rcpp RcppArmadillo]; }; fourierin = derive2 { name="fourierin"; version="0.2.4"; sha256="140721p4h5mjr7r25ckv8wfhbj88xw6v47b613r5bpalg8gw650l"; depends=[Rcpp RcppArmadillo]; }; fpCompare = derive2 { name="fpCompare"; version="0.2.4"; sha256="0w15ylisx7md3nyclqbd13n23f2r36875pdiskav4rry28m892bi"; depends=[]; }; @@ -9670,11 +9787,14 @@ in with self; { fpp2 = derive2 { name="fpp2"; version="2.5"; sha256="1ml4jf7r1q555k7qnr3fky5axl0x66h3g1m61nmdrckgf6idkn0f"; depends=[cli crayon expsmooth fma forecast ggplot2 magrittr purrr rstudioapi]; }; fpp3 = derive2 { name="fpp3"; version="0.5"; sha256="1yg2wv1mdqrmpxbz9kdsxw84q5hg12rsmz1k3i4dq1nymqbkkfq2"; depends=[cli crayon dplyr fable fabletools feasts ggplot2 lubridate magrittr purrr rstudioapi tibble tidyr tsibble tsibbledata]; }; fptdApprox = derive2 { name="fptdApprox"; version="2.4"; sha256="0ql52rx5wc7h5vxl567i065lmj4ygai3xpjwp7qrndl16x1j4k9l"; depends=[]; }; + fqacalc = derive2 { name="fqacalc"; version="1.0.0"; sha256="0mip89m2caxky9g4znlsfxai4r7h9kccm9k59m9y3ksrihnz5wz6"; depends=[dplyr fqadata magrittr rlang]; }; + fqadata = derive2 { name="fqadata"; version="1.0.0"; sha256="03ar7azb342qwf6rqz99wvip496clm8w6d95rf0m6c53yqjgniz2"; depends=[]; }; fqar = derive2 { name="fqar"; version="0.3.0"; sha256="178blb0qn6cs2ykpr17i0qyqc8jxa1hmy6pqxh6vcrw5y6b9qip5"; depends=[dplyr ggplot2 httr jsonlite memoise rlang tidyr tidyselect]; }; fracdiff = derive2 { name="fracdiff"; version="1.5-2"; sha256="0dzl011c92skf7hmx1zvdwsrashmfkxy9p2wig35nzr8609qhpxc"; depends=[]; }; fracdist = derive2 { name="fracdist"; version="0.1.1"; sha256="0ssg8h1mvkzpwq4dn9fdxjg1vzhcv6606wsy0xrm1wz9p6s5rx74"; depends=[]; }; fracprolif = derive2 { name="fracprolif"; version="1.0.7"; sha256="124p5x59smqf8ba0xwhlq69w77zga2bv9plzwkadf700lzvaj2wx"; depends=[emg numDeriv]; }; fractD = derive2 { name="fractD"; version="0.1.0"; sha256="1cnp8qrc6jpdj0grwkvn5jkdymjfhg5ybbhqvknxirc4g981q8bj"; depends=[imager plyr]; }; + fractalRegression = derive2 { name="fractalRegression"; version="1.1"; sha256="00vmb9l1whwlcbskzpy2ql004l47ll3phvdsdmxg8728vinjbacf"; depends=[colorRamps Rcpp RcppArmadillo RcppEigen]; }; fractaldim = derive2 { name="fractaldim"; version="0.8-5"; sha256="1hi5xzya528947wfb50brl00m6n6krv4sn5nzga285nncf6xprhh"; depends=[abind]; }; fractional = derive2 { name="fractional"; version="0.1.3"; sha256="1jz83y53s0xdphh1z3v3z7xhcmhx7rp0iiazw2vdsx2747r3rirn"; depends=[Rcpp]; }; fracture = derive2 { name="fracture"; version="0.2.1"; sha256="1pibw364dp567nf0pbj3adydapgf01cga441v3gj93frh9a412c1"; depends=[Rcpp]; }; @@ -9693,6 +9813,7 @@ in with self; { free = derive2 { name="free"; version="1.0.1"; sha256="0r9vd1d4pi19mnvdchx95axp0hiqs8lpgp0fn40dm89h5fd6zyb0"; depends=[Rcpp RcppArmadillo]; }; freealg = derive2 { name="freealg"; version="1.1-1"; sha256="0jx9r40hql8fkpjr005snavj8fw5ykqa4ya7cy59jhxr31byma3j"; depends=[disordR mathjaxr partitions Rcpp]; }; freebird = derive2 { name="freebird"; version="1.0"; sha256="1rxn4xdp801sng3dzfwm7j001igkn51qx2kc4bcpbczdhb43bzaw"; depends=[MASS Matrix Rmosek scalreg]; }; + freecurrencyapi = derive2 { name="freecurrencyapi"; version="0.1.0"; sha256="02j5jkx0hrv6brb1px782ilv4zlbnv4g2nc4a5d09lqxxvc09kjy"; depends=[httr jsonlite]; }; freedom = derive2 { name="freedom"; version="1.0.1"; sha256="1mrdl2cqdm2c68lx7lyixgiqw6xzwnx9c8j5q4annhiz107i9i22"; depends=[]; }; freegroup = derive2 { name="freegroup"; version="1.1-6"; sha256="17hrcgl3gy99j4mkg019556yk1nxbksmhwcwpkp8fa1lkpmnqr7x"; depends=[freealg magic magrittr plyr]; }; freesurferformats = derive2 { name="freesurferformats"; version="0.1.17"; sha256="125vmx9gw9czlp86c2byv1fdslzhjn8q0plgqnk065sjhbla46cn"; depends=[pkgfilecache rmarkdown xml2]; }; @@ -9719,9 +9840,9 @@ in with self; { frontier = derive2 { name="frontier"; version="1.1-8"; sha256="1qhasynm23yihmhb4d7w72msq2z1xf4xnzrkah3z8jv11yxhg1i2"; depends=[Formula lmtest micEcon miscTools moments plm]; }; frontiles = derive2 { name="frontiles"; version="1.3"; sha256="0m4hw4bybahwmpj14ypc5f078j6zpxi5c04ys9qnhks6x4g2a646"; depends=[colorspace rgl]; }; frostr = derive2 { name="frostr"; version="0.2.0"; sha256="1bsgdskdbyryq7jvhnb4z4xb1m5vadqv00qjlkgp41xh71wp2brs"; depends=[httr jsonlite tibble tidyr]; }; - frscore = derive2 { name="frscore"; version="0.2.0"; sha256="1ndmnfj8wxr07r8m8jzxv9hyyhg9f94wiab7qpqw470q9plgdrks"; depends=[cna dplyr magrittr Rfast rlang]; }; + frscore = derive2 { name="frscore"; version="0.3.1"; sha256="1nfl6jzghr3zg63l3vzkpx8fpr2mz60nxikmssngbcbv6qfyi8i8"; depends=[cna dplyr lifecycle magrittr Rfast rlang]; }; fruclimadapt = derive2 { name="fruclimadapt"; version="0.4.5"; sha256="0v9yh3q7sf0q8lwj89hr50f3s6m14c0azs0rbmykxmj18k376fwg"; depends=[data_table dplyr lubridate magrittr zoo]; }; - fs = derive2 { name="fs"; version="1.6.1"; sha256="0ck7swilvmkp5l81cdqn76rlbbgs90d4xirh186ccw62l8hy9wgs"; depends=[]; }; + fs = derive2 { name="fs"; version="1.6.2"; sha256="1cinqinq8lyl2x7dxinv6kwaxg4757hplw48pm7xq9mbsl77r2sl"; depends=[]; }; fsMTS = derive2 { name="fsMTS"; version="0.1.7"; sha256="18sikbvl6cwsgr5vqxnx3lmpp2mlx22ca16zxddj87z7jfr1fhgn"; depends=[freqdom glasso lars mpmi randomForestSRC]; }; fsbrain = derive2 { name="fsbrain"; version="0.5.3"; sha256="10xfc6b9wwadafqr8ndz9rkbi94ql4kywpb085b5k5yncmfcbq5m"; depends=[data_table fields freesurferformats magick pkgfilecache reshape rgl squash viridis]; }; fscaret = derive2 { name="fscaret"; version="0.9.4.4"; sha256="18fhyfl3f8syyc3g937qx87dmwbv7dray6b97p1s6lnssiv61gsw"; depends=[caret gsubfn hmeasure]; }; @@ -9739,24 +9860,25 @@ in with self; { fstcore = derive2 { name="fstcore"; version="0.9.14"; sha256="0mhk4l86iypg86l0jjs7szxllcy10h4rh5qy2gsmpmiv003gm3nh"; depends=[Rcpp]; }; fsthet = derive2 { name="fsthet"; version="1.0.1"; sha256="0z6az1jcvdahgn97r6cpj1s6fn0lvr7j12gcw2r7wbpajrvyl5j6"; depends=[]; }; ftDK = derive2 { name="ftDK"; version="1.0"; sha256="1xs2rr2afjza97kpym5zkas3k78pilxjlh7lp1gc66banldr71g2"; depends=[dplyr httr pbapply purrr tibble]; }; - ftExtra = derive2 { name="ftExtra"; version="0.5.0"; sha256="1bff931nk1yzda8awsmbmdbi6sabg48y6hywa5r0grc2gf4n6cih"; depends=[dplyr flextable jsonlite magrittr purrr rlang rmarkdown stringr tibble tidyr tidyselect vctrs xfun yaml]; }; + ftExtra = derive2 { name="ftExtra"; version="0.6.0"; sha256="1g1w62lkwdhc99ij8q39m61ya8dscc0bilabp5x3bypd9xd02hwv"; depends=[dplyr flextable jsonlite magrittr purrr rlang rmarkdown stringr tibble tidyr tidyselect vctrs xfun yaml]; }; ftaproxim = derive2 { name="ftaproxim"; version="0.0.1"; sha256="0955zj99vkq82hc08wl17mk2ij1l30nqbcdikf87cx78a13zxy4w"; depends=[ggplot2 plyr]; }; ftrCOOL = derive2 { name="ftrCOOL"; version="2.0.0"; sha256="0jy0dhkf7hlrriz32abp0h52fw92i5k8x25bjqlzd0khyv2vhj0i"; depends=[]; }; ftsa = derive2 { name="ftsa"; version="6.1"; sha256="0j8jr0sbvxfzqfy8va7axljp660jkpqwg9djbis9ikf4x9n9f7n9"; depends=[boot colorspace e1071 ecp evgam fda fdapace fGarch forecast glue KernSmooth LaplacesDemon MASS pcaPP pdfCluster psych rainbow ROOPSD sde strucchange vars]; }; ftsspec = derive2 { name="ftsspec"; version="1.0.0"; sha256="12f9yws1r26i240ijq0xqprl3pgbw50wv68jsm75ycplbs2jsyhs"; depends=[sna]; }; + fude = derive2 { name="fude"; version="0.1.1"; sha256="1ap913fcm4ii1m42r9a0j80gyix87nk8wb8rv56nypb05cbaji6l"; depends=[sf]; }; fuel = derive2 { name="fuel"; version="1.2.0"; sha256="0pzb77g6l8cz5p7y6czck23kp7hs5zp78k87b5yh0avjlr7ads74"; depends=[]; }; fueleconomy = derive2 { name="fueleconomy"; version="1.0.0"; sha256="16a8wyliiidi6rw14ksimygfkl4a7yhxvss7l9bcvr1wfiplrn65"; depends=[]; }; fugue = derive2 { name="fugue"; version="0.1.7"; sha256="1myvi9cizxvahb6wn2k26v3x958xsrm2p414ar05injmfjdfnsmi"; depends=[]; }; - fuj = derive2 { name="fuj"; version="0.1.2"; sha256="0arcfpxjrqp5dxh234i5s9lkzy4cbvxbapmz6lq6069vrhr54wmv"; depends=[]; }; + fuj = derive2 { name="fuj"; version="0.1.3"; sha256="14bmk915xv50h51rmyq5y9gixaw4a1nzc08264c95jl0lvbnx28q"; depends=[]; }; fullROC = derive2 { name="fullROC"; version="0.1.0"; sha256="0pn4lh59snfcyyi28350lm4n9xh6y25hpjr38dc33bic4cfbqiyr"; depends=[]; }; fullfact = derive2 { name="fullfact"; version="1.5"; sha256="1p2f4rf54hd0icy49fkq6p973rqisjjmmr1brwcv0fg22nv2kidg"; depends=[afex lme4]; }; fun = derive2 { name="fun"; version="0.3"; sha256="09601ma4irmpkgjspq6zmr383m1pbgyfdkf7gw8w8gp0q7ab89aq"; depends=[]; }; funData = derive2 { name="funData"; version="1.3-8"; sha256="146mnv09mbjr7vwvwlds1jc91vzbj7df0kb70qmiav0a8bvslngi"; depends=[abind fields foreach]; }; funFEM = derive2 { name="funFEM"; version="1.2"; sha256="17pw743qnljwasj4cg8m8sg9j6piy7g69jr57aqmbizlfdqvvl05"; depends=[elasticnet fda MASS]; }; - funGp = derive2 { name="funGp"; version="0.3.1"; sha256="1jl1rihd9ffdnjvpml7mglb7vd7asxlamdp1fhwig0mfkdscjy3x"; depends=[doFuture doRNG foreach future knitr microbenchmark progressr scales]; }; - funHDDC = derive2 { name="funHDDC"; version="2.3.1"; sha256="1fd3n3y5icm2lcdz5jzfybbbmmzbbgq949x1g4bx4s0h0dnc0rkk"; depends=[fda MASS]; }; + funGp = derive2 { name="funGp"; version="0.3.2"; sha256="1r648syb2l8n53if3cww5jpyl3rrhg36q0fldmsp1nb1xhqqk6vg"; depends=[doFuture doRNG foreach future knitr microbenchmark progressr scales]; }; funLBM = derive2 { name="funLBM"; version="2.3"; sha256="0aa9h6nbxbvd6iq4q00rndhvb6sq79lpdgr3zwz0lcgjx6p56s5g"; depends=[abind fda funFEM ggplot2]; }; funModeling = derive2 { name="funModeling"; version="1.9.4"; sha256="1zhmazw77phcdwj9wwxpwjfhwd8wyjc538acqiwq9f6sz8fw1cbb"; depends=[cli dplyr entropy ggplot2 gridExtra Hmisc lazyeval moments pander RColorBrewer reshape2 ROCR scales stringr]; }; + funStatTest = derive2 { name="funStatTest"; version="1.0.2"; sha256="1dqp4yh01w8xdbjhjzxrx33w0hgxcm5a43r27q17m34hqiv33y34"; depends=[checkmate distr dplyr ggplot2 magrittr Matrix pbapply stringr tibble tidyr tidyselect]; }; func2vis = derive2 { name="func2vis"; version="1.0-3"; sha256="16lp9sz63s3g3f1j1dmx881k6wy177cmi4vl6xwg4bzg88bkf8rq"; depends=[devtools ggplot2 ggrepel igraph randomcoloR]; }; funcharts = derive2 { name="funcharts"; version="1.3.1"; sha256="0bmlcqpx6yzgs0r0jsfyf8k0iw2xs59njjqby8zwkvd6adxc2rzs"; depends=[dplyr fda ggplot2 matrixStats patchwork rlang roahd RSpectra stringr tidyr]; }; funchir = derive2 { name="funchir"; version="0.2.2"; sha256="1a5nwqnnv0bn2wrw4lbnwbxkb9xr273sq8m8lnv8wy7wzfyfjaxz"; depends=[data_table]; }; @@ -9777,6 +9899,7 @@ in with self; { funtimes = derive2 { name="funtimes"; version="9.1"; sha256="0gz26djl534d42wxspg9hl0ndhzzhkr9d4vp87afqqg9401qcgcz"; depends=[dbscan Kendall lmtest mlVAR Rdpack sandwich vars]; }; furniture = derive2 { name="furniture"; version="1.9.12"; sha256="0akydlxq7my4xfrh6mjgm2i91h215lhbwmxxbjf0fr537yqxjrmd"; depends=[dplyr knitr]; }; furrr = derive2 { name="furrr"; version="0.3.1"; sha256="12z4q0fn7asxis17hisi82bvfabl5if1338lmfqmkrwv5rg7748d"; depends=[future globals lifecycle purrr rlang vctrs]; }; + fusedMGM = derive2 { name="fusedMGM"; version="0.1.0.1"; sha256="126h8jvmx1y1n49p4s2h3qn7qfzf6q98k7b7rwjn6rn9hjvwd45j"; depends=[bigmemory fastDummies gplots]; }; fusen = derive2 { name="fusen"; version="0.4.1"; sha256="0b93nmpycxkf6cydd3d4a6aph78vgmspp0xqs63ic3144wxqx5bx"; depends=[attachment cli desc devtools glue here magrittr parsermd roxygen2 stringi tibble tidyr usethis]; }; fuser = derive2 { name="fuser"; version="1.0.1"; sha256="17lsfpd9hdichj3wflac896zyjbq7a8w2gmlgj8nbgg80f646fgr"; depends=[glmnet irlba Matrix Rcpp RcppEigen RSpectra]; }; fusionchartsR = derive2 { name="fusionchartsR"; version="0.0.3"; sha256="09l5kckgkp2l0zvfnqhbzy65bi23aavas9m74nddhjh6di8xndh8"; depends=[htmlwidgets jsonlite magrittr shiny]; }; @@ -9785,14 +9908,14 @@ in with self; { futile_options = derive2 { name="futile.options"; version="1.0.1"; sha256="0w15agpi88y3qkv6fl72zy2pzyplzgvnj41a4ixhg64mw1sck73s"; depends=[]; }; futility = derive2 { name="futility"; version="0.4"; sha256="0zjb87brz7pkx3nq3q30y69cmcxpqqsra447p60qh7005kgr9vx4"; depends=[]; }; future = derive2 { name="future"; version="1.32.0"; sha256="0xigdxcxx0nv0lbbrfqwbgcm02yw95ja706m9lc4b5q65m8p9fym"; depends=[digest globals listenv parallelly]; }; - future_apply = derive2 { name="future.apply"; version="1.10.0"; sha256="1all7ri4nsjxfakw8pssif22j33ch1nhw3sc0raqrzhj93c2vsfy"; depends=[future globals]; }; + future_apply = derive2 { name="future.apply"; version="1.11.0"; sha256="1s019gdmmv0yr8011vm23p7apznbzfw54z9nmymkxc5mp7730yri"; depends=[future globals]; }; future_batchtools = derive2 { name="future.batchtools"; version="0.12.0"; sha256="1fr4w4czslx1cxlpj9xq5v7093xsrsgqlcgryy3vzgjgy0hyp40a"; depends=[batchtools future parallelly]; }; future_callr = derive2 { name="future.callr"; version="0.8.1"; sha256="1w7wq2nrvj65a25nsb5h99258p9565qwnlvcc07nyc21gm5zrg9k"; depends=[callr future]; }; - future_tests = derive2 { name="future.tests"; version="0.6.0"; sha256="0nngq10fgqq1ha6rb62zc8nnz9wxvmznskzjfnibfsgjirvld11r"; depends=[cli crayon future prettyunits sessioninfo]; }; + future_tests = derive2 { name="future.tests"; version="0.7.0"; sha256="10g1w99xqr7l0cn27642aphqcvfidgpas38f84r815yy6k1ryrlx"; depends=[cli crayon future prettyunits sessioninfo]; }; futureheatwaves = derive2 { name="futureheatwaves"; version="1.0.3"; sha256="122b2z86bzxfch67y6cpq8wj62mw0dgkzbmnpwi247kdx7w5mw1f"; depends=[data_table dplyr ggplot2 ggthemes leaflet Rcpp stringr tidyr]; }; fuzzr = derive2 { name="fuzzr"; version="0.2.2"; sha256="1cwq7a5j6lzrlz9dw3hsfap988rh1kkgf03yni7c33zl69xp5w77"; depends=[assertthat progress purrr]; }; fuzzyRankTests = derive2 { name="fuzzyRankTests"; version="0.4"; sha256="04841fh4nf7qriqk0b2ny943bji60bj42j8czg056d2dza4q4039"; depends=[]; }; - fuzzySim = derive2 { name="fuzzySim"; version="4.9.8"; sha256="1i0qqmd745qyqdzbd2byw2hfa41cd13a6c1vd04xrabkv1ig8978"; depends=[modEvA]; }; + fuzzySim = derive2 { name="fuzzySim"; version="4.9.9"; sha256="1lh60myr49lp25kkd6snpm8sy5vjcfh537mjh4wmyhx1hq0py7qs"; depends=[modEvA]; }; fuzzyforest = derive2 { name="fuzzyforest"; version="1.0.8"; sha256="0sb7qia01a5h6p12riq6vdq9likmqb6i949axsxszy5sf1zk50v5"; depends=[doParallel foreach ggplot2 mvtnorm randomForest]; }; fuzzyjoin = derive2 { name="fuzzyjoin"; version="0.1.6"; sha256="0s5rhqz8vih4za3a8k1k7i3gq8hj0w7bqnakw40k6mg87jvyzsj7"; depends=[dplyr geosphere purrr stringdist stringr tibble tidyr]; }; fuzzyreg = derive2 { name="fuzzyreg"; version="0.6.2"; sha256="056ryj4w26fb4fpy43fgvqs8ijcpm6v503pnzw73d8gxahwkvwl2"; depends=[limSolve quadprog]; }; @@ -9802,23 +9925,27 @@ in with self; { fwildclusterboot = derive2 { name="fwildclusterboot"; version="0.13.0"; sha256="0slm28pgvfsrsdvz2i1h231gkf4iq6gdlspyzppn8nwhngvic5hd"; depends=[collapse dqrng dreamerr Formula generics gtools JuliaConnectoR MASS Matrix Rcpp RcppArmadillo RcppEigen rlang summclust]; }; fwsim = derive2 { name="fwsim"; version="0.3.4"; sha256="0fy87c1x5hihfcppv1pvk3b0pwl6ygqpka40x55gbpkgssdigb1l"; depends=[Rcpp]; }; fxTWAPLS = derive2 { name="fxTWAPLS"; version="0.1.2"; sha256="1bxrwkf65qw3k6mqvp27lqw6i2r7bdbilnl9406k1nva353gcxxm"; depends=[doFuture foreach future geosphere ggplot2 JOPS MASS progressr]; }; + fxl = derive2 { name="fxl"; version="1.6.3"; sha256="1c1cw1j1vz7my868ryg0r7zw655xbhk0za75pvd3mgfy0bs6600x"; depends=[grImport rlang]; }; fxregime = derive2 { name="fxregime"; version="1.0-4"; sha256="0ml1q0xp90jfng6a60pfkp6j7wajk6pz4p4wm08rfqikgsdvp0m4"; depends=[car sandwich strucchange zoo]; }; fy = derive2 { name="fy"; version="0.3.0"; sha256="13803ld4b59ly5h3zlianag9901jyw6p70bsyz5dj7k62hg7ha3s"; depends=[data_table fastmatch hutils]; }; g_data = derive2 { name="g.data"; version="2.4"; sha256="14a4m0v38p3j1k1kymkxwydlgm8b73hlx9m80sg1l4aj38fvflzl"; depends=[]; }; g3viz = derive2 { name="g3viz"; version="1.1.5"; sha256="0pjn1rgqbrkbdrcnf01j9lm3257fnp7b0p5p3hyhg8srd990wp61"; depends=[cBioPortalData htmlwidgets jsonlite stringr]; }; gCat = derive2 { name="gCat"; version="0.2"; sha256="0n1x039a0pm4sz2rwsgq82n423zgp4xni69129dh3nvxfrc0hzc5"; depends=[]; }; gDefrag = derive2 { name="gDefrag"; version="0.3"; sha256="016vpj03drygxsa06jin225rfgjvjm938x65990ms15xcwrgv8nb"; depends=[igraph maptools rgdal rgeos sp]; }; + gFormulaMI = derive2 { name="gFormulaMI"; version="1.0.0"; sha256="1zp8gn83h7bnfygi46qqhda4z5n2axbvcmqvhz60ba0daknw0jx0"; depends=[mice]; }; gIPFrm = derive2 { name="gIPFrm"; version="3.1"; sha256="08rfdac442picbw1r3xyxjzf2dc57svg44am0714z4r72mshvj04"; depends=[]; }; gJLS2 = derive2 { name="gJLS2"; version="0.2.0"; sha256="112fyy76ry6g0xinhy09s5vdcd11jw7sivadlx05ali89lm5nigg"; depends=[ggplot2 MASS MCMCpack moments nlme plyr quantreg]; }; + gKRLS = derive2 { name="gKRLS"; version="1.0.2"; sha256="0kkk463mgrypc5vihv9hvj7dsdwv6yvmhxp6iy6ip1k7nqi8xdvf"; depends=[Matrix mgcv mlr3 R6 Rcpp RcppEigen sandwich]; }; gLRTH = derive2 { name="gLRTH"; version="0.2.0"; sha256="1drmmr576n3pbr0q1cnnx4k7r4iz061n2cizv1kpr3wcc1g291pn"; depends=[]; }; gMCP = derive2 { name="gMCP"; version="0.8-15"; sha256="01048j9489rrhv9syqrbw4c5i5gsll41ysm27awxw6l1rshbqsqn"; depends=[CommonJavaJars JavaGD MASS Matrix multcomp mvtnorm PolynomF rJava xlsxjars]; }; gMCPLite = derive2 { name="gMCPLite"; version="0.1.2"; sha256="1vaqwbj64m7xvr9vhpy0vb3l88sp1cbnpnxvw20ma62qvrayk2yn"; depends=[ggplot2 MASS mvtnorm]; }; - gMOIP = derive2 { name="gMOIP"; version="1.4.9"; sha256="15lnn80shpdkc0qzchrpn939z3j581jjfl6m4032vmdpgyynmhak"; depends=[dplyr geometry ggplot2 ggrepel MASS Matrix plyr png purrr Rfast rgl rlang sp tibble tidyr tidyselect]; }; + gMOIP = derive2 { name="gMOIP"; version="1.5.0"; sha256="1ihbwzc2vmbzs1rvmqv386n0snmsljdv1jqbpyx21c8xkx81wc4v"; depends=[dplyr geometry ggplot2 ggrepel MASS Matrix plyr png purrr Rfast rgl rlang sp tibble tidyr tidyselect]; }; + gMWT = derive2 { name="gMWT"; version="1.4"; sha256="1iv7dav6l9gx6vhghcyasdizjsz2f8yzcgkj2i50kpgw74ljg5ia"; depends=[clinfun Rcpp RcppArmadillo]; }; gProfileR = derive2 { name="gProfileR"; version="0.7.0"; sha256="1h1v0kgpsn04ald2izznh7fr2riwisj5hcgz4k7h3qc931rf0r4k"; depends=[plyr RCurl]; }; gRain = derive2 { name="gRain"; version="1.3.13"; sha256="1mbxny2ykm32wbh04n8f049f0ww4kj5j18m8bqr78ggcmmrwl19q"; depends=[broom graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; gRaven = derive2 { name="gRaven"; version="1.1.8"; sha256="0nmnmn5ni4ml5r7ah7kl8n51r5bcd9r6ncg7yz4qypbdqdamqx87"; depends=[gRain gRbase rlang]; }; gRbase = derive2 { name="gRbase"; version="1.8.9"; sha256="0zix34w60l94qsfh6gxw9qf4l564fmml9s4nc4y5kr4nv11b9jns"; depends=[BiocManager graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; - gRc = derive2 { name="gRc"; version="0.4.4"; sha256="0p1m816al9djv5fhzgsgrbbbcpx5c5wjxvxwni6gs2cwxbxmdvcp"; depends=[gRbase magrittr MASS Rcpp RcppArmadillo]; }; + gRc = derive2 { name="gRc"; version="0.4.5"; sha256="051xypj0mcrmb4xyrbpicz08dj74klrfbzi463hvbgcvxyh75m3c"; depends=[gRbase magrittr MASS Rcpp RcppArmadillo]; }; gRim = derive2 { name="gRim"; version="0.2.10"; sha256="1h5fds5paqg0bxdpbk6cz2wclw9sbwaw08zrp7dxims0n5fcc8zp"; depends=[gRain graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; gSEM = derive2 { name="gSEM"; version="0.4.3.4"; sha256="18kh41ibvfflz59gykiq7j2c6a72i8b0w8c2mcprd1nzhnyhvmhy"; depends=[DiagrammeR htmlwidgets knitr MASS]; }; gSeg = derive2 { name="gSeg"; version="1.0"; sha256="0lixlirisnxk29zlrragi3l8j1abb5cl7zh6vhx7l5hjdvh8ldq9"; depends=[]; }; @@ -9828,10 +9955,9 @@ in with self; { gWQS = derive2 { name="gWQS"; version="3.0.4"; sha256="1yhbcmznii3n2sbw0z2rw1sdn0zlk5v2z7ww3nl7rn005g4q04hi"; depends=[broom cowplot dplyr future future_apply ggplot2 ggrepel kableExtra knitr MASS Matrix nnet plotROC pscl reshape2 rlist]; }; gWidgets2 = derive2 { name="gWidgets2"; version="1.0-9"; sha256="1ifljpdazzmwf3mgkg9g76365n2cmw8dd3da161fpvw84xxyznfl"; depends=[digest]; }; gWidgets2tcltk = derive2 { name="gWidgets2tcltk"; version="1.0-8"; sha256="02ic4avpa33dnqsnm1mzg7ci1psngk1p169pqf259szf6v39qf8h"; depends=[digest gWidgets2 memoise]; }; - gadget2 = derive2 { name="gadget2"; version="2.3.9"; sha256="1cha4n0bd1imlvpzsgd337p0my75kakjsxdmmgx8p519r2dl07vz"; depends=[]; }; - gadget3 = derive2 { name="gadget3"; version="0.8-4"; sha256="12s91c0wy0xvy5f89w05rsa8299hbywsp98z0a14l8s18dbgwfrf"; depends=[digest Matrix rlang TMB]; }; + gadget3 = derive2 { name="gadget3"; version="0.9-0"; sha256="1h1xyhqzjks7dcnmf76xxx5kc659r3kafjc6bl07z66cv2zadmgi"; depends=[digest Matrix rlang TMB]; }; gafit = derive2 { name="gafit"; version="0.5.1"; sha256="160z3cv22prf7118447dla9g1gimwkfad8zdil3fg8n4l22rk51a"; depends=[]; }; - gaiah = derive2 { name="gaiah"; version="0.0.4"; sha256="1ibsbmmpagr7ix1c3bszrglqx95w44qyfy80vcq3w2dprs8vrrw6"; depends=[dplyr geosphere magrittr maptools raster rlang sp]; }; + gaiah = derive2 { name="gaiah"; version="0.0.5"; sha256="1s2chr3zjgvmmic178c1fixbvf501q7jvxdg8204jalh9iii14vb"; depends=[dplyr geosphere magrittr raster rlang sp]; }; gainML = derive2 { name="gainML"; version="0.1.0"; sha256="1mqhrdjdmc2n7dxilxkqn6xq7z0qnxpigw5bbffnjvvsmdamah0n"; depends=[fields FNN]; }; gains = derive2 { name="gains"; version="1.2"; sha256="1nmrhc7qjlyzn04r1qyjdws5fin3idmi789kbxzilax12ya8xr7k"; depends=[]; }; galigor = derive2 { name="galigor"; version="0.2.5"; sha256="1lfw1kikf90nv9g0xrb656fbilmxdk64zrzi43wrz7y2y55sd5xv"; depends=[cli crayon dplyr gargle getProxy magrittr purrr rappsflyer rfacebookstat rgoogleads rmytarget rstudioapi rvkstat ryandexdirect rym tibble tidyr]; }; @@ -9848,7 +9974,7 @@ in with self; { gamclass = derive2 { name="gamclass"; version="0.62.3"; sha256="0i2nynl4b46rdl8f2zashcg0dvlhcq9paq8hx5y40xpxm8iljqab"; depends=[lattice latticeExtra randomForest rpart]; }; gameR = derive2 { name="gameR"; version="0.0.5"; sha256="0k4gsnlb4jc9nbvxjjqyllvn70a707pl1icc3dhc62gqychkaxyn"; depends=[]; }; gamesGA = derive2 { name="gamesGA"; version="1.1.3.7"; sha256="0km0z2haqgykl01xkzsbkpwibavgqfjygx7cg08ni68gw501689l"; depends=[shiny]; }; - gamlr = derive2 { name="gamlr"; version="1.13-7"; sha256="0p0q77lkb5j9p1gd2z1n74pphx7h0lynzdamxrhz2w6bif1431wz"; depends=[Matrix]; }; + gamlr = derive2 { name="gamlr"; version="1.13-8"; sha256="1psvxx7ymkgr4acis85842xgafc5azdl7v1cmgvgbhsdwksm95q7"; depends=[Matrix]; }; gamlss = derive2 { name="gamlss"; version="5.4-12"; sha256="1w5630hzir49nacpvmx28hqc8hcc9acmba9dd8zwzhz5ywwi0ycz"; depends=[gamlss_data gamlss_dist MASS nlme survival]; }; gamlss_add = derive2 { name="gamlss.add"; version="5.1-6"; sha256="0g80bn0nszs2nmka6dypyvqnsgxp7mzhf5nd82n5x4jm3ca3dbdj"; depends=[gamlss gamlss_dist mgcv nnet rpart]; }; gamlss_cens = derive2 { name="gamlss.cens"; version="5.0-1"; sha256="1s83dgifidvc6cbrqirwlvwfzg08mlhmxxiqkbmnsy09i5j9fzd3"; depends=[gamlss gamlss_dist survival]; }; @@ -9869,8 +9995,8 @@ in with self; { gamma = derive2 { name="gamma"; version="1.0.3"; sha256="0f0si1w3xfwasfr6256dkqva159fgdd27h4yn6gw54s35skkdw7z"; depends=[ggplot2 IsoplotR rlang rxylib]; }; gamreg = derive2 { name="gamreg"; version="0.3"; sha256="1svrgbb8qdy2hzpq1g38v2lzmlbrn7qljix827biqzwgiajy69gg"; depends=[doParallel foreach glmnet Rcpp RcppArmadillo robustHD]; }; gamsel = derive2 { name="gamsel"; version="1.8-2"; sha256="1w1z2g0njsfv1ah6w3zw4lcgnaxask5mgykb204jzp6hpnc1a6cb"; depends=[foreach mda]; }; - gamselBayes = derive2 { name="gamselBayes"; version="1.0-2"; sha256="1dqxc7g529lkdk2lvn3ls4gxij7djs5xycrzlw49wf79pns2s5cc"; depends=[Rcpp RcppArmadillo]; }; - ganDataModel = derive2 { name="ganDataModel"; version="1.1.3"; sha256="0x2halgs33x4ip2lrq55cswd9b8jwd8k8vcxx7v51wkwzp9zpyzb"; depends=[Rcpp tensorflow]; }; + gamselBayes = derive2 { name="gamselBayes"; version="1.0-3"; sha256="0w5jpnmihz8ggqz060849m1xy2r1bv46s89ar4mff95pf5bykfah"; depends=[Rcpp RcppArmadillo]; }; + ganDataModel = derive2 { name="ganDataModel"; version="1.1.4"; sha256="1vpw5ijl0mr1vgzqavsmich0f0vhi94df6d92a7adi915inqvdaz"; depends=[Rcpp tensorflow]; }; ganGenerativeData = derive2 { name="ganGenerativeData"; version="1.4.3"; sha256="0fsdzjhawkdc997f3w73da81h00a4ar8aljmfypy311nsg8nda7c"; depends=[Rcpp tensorflow]; }; ganalytics = derive2 { name="ganalytics"; version="0.10.7"; sha256="03jf7325cgg5p6lzcrzzzx0b40vf3l5vhw95lih098kpmlr1zadf"; depends=[assertthat googleAnalyticsR httpuv httr jsonlite lazyeval lubridate plyr R6 rvest scales selectr stringr tibble XML xml2]; }; gap = derive2 { name="gap"; version="1.5-1"; sha256="1p0kwdsay8n29sg8jpfjbyqj3848irzn3l6a238fn4jpbw23fk8d"; depends=[dplyr gap_datasets ggplot2 plotly]; }; @@ -9880,13 +10006,13 @@ in with self; { gapmap = derive2 { name="gapmap"; version="0.1.0"; sha256="04dz7ns7xsa0q0v7sllaqlhk4mis8gvqzr2a1y4fiiqrk7337gmm"; depends=[ggplot2 reshape2]; }; gapminder = derive2 { name="gapminder"; version="1.0.0"; sha256="1hlpddji4z7j71fhpc6nkwl6fmwxfkdj9v053c9fhnvr1ywjzs4h"; depends=[tibble]; }; garchx = derive2 { name="garchx"; version="1.5"; sha256="0znb5drsbd6vfr6yp020r3w3k3jmk6p3xcnkx3n2sc7fm2qg765b"; depends=[zoo]; }; - gargle = derive2 { name="gargle"; version="1.3.0"; sha256="02ldshm8phs1ls0djqfprv5yy8i50ijh16y7smkb61wrwd4zr3s2"; depends=[cli fs glue httr jsonlite lifecycle openssl rappdirs rlang rstudioapi withr]; }; + gargle = derive2 { name="gargle"; version="1.4.0"; sha256="12s980jfw98czzrxdn83b2blj4qcrkqqmycjplkzvm4mapgiw3wf"; depends=[cli fs glue httr jsonlite lifecycle openssl rappdirs rlang withr]; }; gargoyle = derive2 { name="gargoyle"; version="0.0.1"; sha256="0lsjplfrc047lb3zjfsc8wl47kll7d85v824k7zlr0n34xbbypq7"; depends=[attempt shiny]; }; garma = derive2 { name="garma"; version="0.9.11"; sha256="05jhac1cm82xjpz1dnwp7xcs58b3lxbzh4wmr4z7hkn5jdh3gsv5"; depends=[BB crayon dfoptim FKF forecast GA ggplot2 lubridate nloptr pracma pso Rsolnp signal tswge zoo]; }; garray = derive2 { name="garray"; version="1.1.2"; sha256="0s2dgi556x9jnhafvzz4qkxdbq9dm12gsvsqd2g9iy3468fx9flq"; depends=[]; }; gaselect = derive2 { name="gaselect"; version="1.0.21"; sha256="0grn08w7cy8vsn8cys7j1sp3qy4h90z20f886nva22zmkn1ha9wd"; depends=[Rcpp RcppArmadillo]; }; - gasfluxes = derive2 { name="gasfluxes"; version="0.4-4"; sha256="0gi0zk0h5rw75n6znada0cwa9qzy8higsiiqwgdm3q827j1x8iva"; depends=[AICcmodavg data_table MASS sfsmisc]; }; - gasmodel = derive2 { name="gasmodel"; version="0.2.0"; sha256="0b3z2b1n6m5cspy0mc41lm01q1frccbziha4fxya007pv15fhdlm"; depends=[abind arrangements Matrix mvnfast nloptr numDeriv pracma]; }; + gasfluxes = derive2 { name="gasfluxes"; version="0.5"; sha256="0y17lpry9q6lkkmnpj9sn0yql1g5q1z32zcc7hxxip6sd46qxjqn"; depends=[data_table MASS sfsmisc]; }; + gasmodel = derive2 { name="gasmodel"; version="0.3.0"; sha256="07vynmg9iy5ny7s4j6h3krpj3w5dfygqs5b9i7c079f54vlpsxib"; depends=[abind arrangements CircStats Matrix mvnfast nloptr numDeriv pracma]; }; gasper = derive2 { name="gasper"; version="1.1.3"; sha256="0ff110nc5p7x8q7cljvzyjqdyf4lwz1dkq2i0pqasiifdij6m71a"; depends=[curl ggplot2 httr Matrix Rcpp RcppArmadillo RSpectra]; }; gastempt = derive2 { name="gastempt"; version="0.5.5"; sha256="0pz580nhr9hnpzdi59l00jv34jmy5iyh5skbwslq6gzjdw3jgsf4"; depends=[assertthat BH dplyr ggplot2 nlme Rcpp RcppEigen RcppParallel rstan shiny StanHeaders stringr tibble utf8]; }; gaston = derive2 { name="gaston"; version="1.5.9"; sha256="1f4pr5s4p4rw1smvsh2gwjxp7hh43j1fpadl286ma9i62kirpyq7"; depends=[Rcpp RcppEigen RcppParallel]; }; @@ -9898,7 +10024,7 @@ in with self; { gaussfacts = derive2 { name="gaussfacts"; version="0.0.2"; sha256="095x7k7m7sy1gqkbm6wiqn26252dclz62sbnkv6cjvmbdxajl7m9"; depends=[]; }; gaussplotR = derive2 { name="gaussplotR"; version="0.2.5"; sha256="0amkgzgh6764ri30210nhbi3wcll3248fmkpclx010dxc3hllfdx"; depends=[ggplot2 metR rgl viridisLite]; }; gaussquad = derive2 { name="gaussquad"; version="1.0-3"; sha256="04689l076agncsxqcbkx76z89cvjigs8p8v58p5kad655gjpqcx3"; depends=[orthopolynom polynom]; }; - gawdis = derive2 { name="gawdis"; version="0.1.3"; sha256="1zrz9pms7yb80g276vwl57id61bhvcm9ni6da0ii1cxrhr5nvlkk"; depends=[FD GA]; }; + gawdis = derive2 { name="gawdis"; version="0.1.5"; sha256="13f7fx5j9r5wky2zriyqlr7vjda1y9c7n3iz0ajw6fxfr1c670dx"; depends=[FD GA]; }; gazepath = derive2 { name="gazepath"; version="1.3"; sha256="1sv0vdwzmvpnj2k8lphnf4y12fi5md0j2725fjkv1n7a3dkd6faa"; depends=[jpeg scales shiny sp zoo]; }; gb = derive2 { name="gb"; version="2.3.3"; sha256="0gkdkbwr168vi7lgccla49l43rkmjcfrwlqdr65mg5syzcxrh7nh"; depends=[boot KernSmooth]; }; gbRd = derive2 { name="gbRd"; version="0.4-11"; sha256="06x97rw5i6v6cgjxkfhxnw4dn7lghn5q6ra7ri5ag1x9dkfzcl82"; depends=[]; }; @@ -9924,13 +10050,15 @@ in with self; { gcmr = derive2 { name="gcmr"; version="1.0.3"; sha256="0m4px1w41226clczzmnzal3hs0qwrvlhhdnkcxj1i7qp358ksxvm"; depends=[betareg car Formula lmtest nlme sandwich sp]; }; gconsensus = derive2 { name="gconsensus"; version="0.3.2"; sha256="065i587611nh3fiaxlp88qzd12cjxpbdvxn8pvd99fmk88d809zs"; depends=[coda MASS rjags]; }; gcookbook = derive2 { name="gcookbook"; version="2.0"; sha256="11g1q187l4j31b6cdzdx5z3s14z3s09l7ynl36pzzn9j19l8cmrc"; depends=[]; }; - gcplyr = derive2 { name="gcplyr"; version="1.1.0"; sha256="0px84fbczxqm3f8ggsijm3l5m2n1ajz4qrmfph87rvwg8r0xvn7k"; depends=[dplyr tidyr]; }; + gcplyr = derive2 { name="gcplyr"; version="1.5.2"; sha256="0wbvnx9hk20caj0ap4nw97b59zyy4q4kbp83am61gblrn257wahj"; depends=[dplyr tidyr]; }; gdalUtilities = derive2 { name="gdalUtilities"; version="1.2.4"; sha256="1ixqkm03w207bf5sdrlfxdqjrclkrm0gfhmwm3h2lzwp4himiljn"; depends=[sf]; }; - gdalcubes = derive2 { name="gdalcubes"; version="0.6.3"; sha256="0ywc7bxw49cbjhcafby7dlxhzz52abxirar48ar076m6wkk2vbad"; depends=[jsonlite ncdf4 Rcpp]; }; - gdata = derive2 { name="gdata"; version="2.18.0.1"; sha256="1n9jw136kk5ld27qvny7cx2s8l34jdgmzlx40x62mmcqjddksbsy"; depends=[gtools]; }; + gdalcubes = derive2 { name="gdalcubes"; version="0.6.4"; sha256="1zvx6adc7i1811ri2i5c5w4rkh5wi1rmxi2xm8amf6cwqym8rnzd"; depends=[BH jsonlite ncdf4 Rcpp]; }; + gdalraster = derive2 { name="gdalraster"; version="1.2.0"; sha256="1kxlj17pzppayih7sl0g4n6ashz3g3h3439kcm172wmacm3aqm2q"; depends=[Rcpp]; }; + gdata = derive2 { name="gdata"; version="2.19.0"; sha256="1lv3cz990f7m2bfcf62fjm6wz6zd2ycrci06b7mfd0xmcn3bwifi"; depends=[gtools]; }; gde = derive2 { name="gde"; version="0.2.1"; sha256="05paf15dn2l7mfzhy3p3k7a2831fj9fwvwgljhcv7wpdj7djdccs"; depends=[data_table dplyr DT ggplot2 httr jsonlite leaflet progress R_utils readr RSQLite shiny shinycssloaders shinyWidgets stringr XML]; }; + gdi = derive2 { name="gdi"; version="1.1.1"; sha256="0xhmj0j3v8q6pda4hhgzzcfjcghv93rrsyhgn4l1x8ljwqij67nf"; depends=[jpeg png]; }; gdiff = derive2 { name="gdiff"; version="0.2-5"; sha256="1j3xmvpqs5vb9iq460dishi8bsb0kwfz6742bpvnhpk8z3mhf9af"; depends=[magick pdftools]; }; - gdistance = derive2 { name="gdistance"; version="1.6"; sha256="1pjzslcnhqfs41zlxnwshq34pmnjh49lb239v74vjxq4rb2h5nrx"; depends=[igraph Matrix raster sp]; }; + gdistance = derive2 { name="gdistance"; version="1.6.2"; sha256="0aclsdh5jixlk7k27d64vd8zn92rbp67rs0v9nfd3wpi1021dvly"; depends=[igraph Matrix raster sp]; }; gdm = derive2 { name="gdm"; version="1.5.0-9.1"; sha256="10c4fk6pbd946is8h8cr8qblrq6cch5zhlhrxqd8ix5wknm8cqn8"; depends=[doParallel foreach pbapply raster Rcpp reshape2 vegan]; }; gdpc = derive2 { name="gdpc"; version="1.1.3"; sha256="1ba7ma1y4pxvx7byg19fzgpp1zswcihdaifyhb7zdadizxjzyj43"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; }; gds = derive2 { name="gds"; version="0.1.1"; sha256="0gwq0k80rnbg4ibz6dz8sk6hqaklrdbv4vzv8zyk74am3aqipn20"; depends=[]; }; @@ -9945,6 +10073,7 @@ in with self; { geecure = derive2 { name="geecure"; version="1.0-6"; sha256="0nmnrkfgblv38qvk66bdk8933icr59mayqwljkvmpy59sm6br2k5"; depends=[geepack MASS Matrix survival]; }; geepack = derive2 { name="geepack"; version="1.3.9"; sha256="1ryd1l28b71f4yx6y9l1mqmlp5g3ykq1f09g84y28w3hkbwzs1m1"; depends=[broom magrittr MASS]; }; geesmv = derive2 { name="geesmv"; version="1.3"; sha256="0gm953z8q5cc1adl3d6vj5djg2inc880zfcdl5gd56fnb5gl6h1w"; depends=[gee MASS matrixcalc nlme]; }; + geessbin = derive2 { name="geessbin"; version="0.1.1"; sha256="18rs345z9iy3zm27g9c2hr1di5563s6z62h5j4q0qw268iwacglz"; depends=[MASS]; }; geex = derive2 { name="geex"; version="1.1.1"; sha256="0hs17vmwgpvv85za32rmnlylp0fbbirb1irxxqkgx3dsffgvpbm1"; depends=[lme4 Matrix numDeriv rootSolve]; }; geigen = derive2 { name="geigen"; version="2.3"; sha256="0blg4w9wjprbax8z6md3285v12ajcjmcrpca52l3kd5qmxlvizy7"; depends=[]; }; geiger = derive2 { name="geiger"; version="2.0.11"; sha256="0s9zvqgn30spwggwpr02gzdjg3h4kgqamq37i03i14a3i2ls1ifw"; depends=[ape coda colorspace deSolve digest MASS mvtnorm ncbit phytools Rcpp subplex]; }; @@ -9969,13 +10098,13 @@ in with self; { genderBR = derive2 { name="genderBR"; version="1.1.2"; sha256="19n3d6ps0wswq1bxgfqifq26svqf8q696im14wfglrl731mr0qbm"; depends=[dplyr httr jsonlite magrittr purrr tibble]; }; gendist = derive2 { name="gendist"; version="2.0"; sha256="0rs0sn1sb6j3pk2xncix04a093awlm2nw70g0rjhr7dlzmigspgb"; depends=[]; }; geneExpressionFromGEO = derive2 { name="geneExpressionFromGEO"; version="0.9"; sha256="15dvx2f4nsmw1mgjfpcdcfnx8335fd043xb4hdnqcbjzf9h228bp"; depends=[annotate Biobase BiocManager GEOquery markdown R_utils xml2]; }; - geneHapR = derive2 { name="geneHapR"; version="1.1.8"; sha256="1m0dm4i6l61rjzpdl5y7f24dik4hmhhg3ga7hmxf8jsgyqazi69r"; depends=[ape Biostrings genetics GenomicRanges ggplot2 ggpubr IRanges lolliplot maps pegas reshape2 rlang rtracklayer shiny shinyjs stringdist stringr tibble tidyr vcfR]; }; + geneHapR = derive2 { name="geneHapR"; version="1.1.9"; sha256="1fkf41llhmf2rlb1aj5y8qcrq6wn4860bsfp9y6xz1xinjpgi8w7"; depends=[ape Biostrings genetics GenomicRanges ggplot2 ggpubr IRanges lolliplot maps pegas reshape2 rlang rtracklayer shiny shinyjs stringdist stringr tibble tidyr vcfR]; }; geneHummus = derive2 { name="geneHummus"; version="1.0.11"; sha256="1m6yyjsvmn3w87cw4da8js5vi74k5y739gxdx1yscx1n50bc3m34"; depends=[curl dplyr httr rentrez stringr]; }; - genekitr = derive2 { name="genekitr"; version="1.1.5"; sha256="0mwsbgqjvqnr007l7wzx8pp0db1dfjibfn6294pylpkrjbh82nl9"; depends=[clusterProfiler dplyr europepmc fst geneset ggplot2 ggraph igraph magrittr openxlsx rlang stringi stringr tidyr VennDiagram]; }; + genekitr = derive2 { name="genekitr"; version="1.2.2"; sha256="0g22w1bqmcli0vvidcw2ywmc76l3x7zhk3a4fw3vrhwm7vjwnp7k"; depends=[clusterProfiler dplyr europepmc fst geneset ggplot2 ggraph ggvenn igraph magrittr openxlsx rlang stringi stringr tidyr]; }; genemodel = derive2 { name="genemodel"; version="1.1.0"; sha256="1x6n6k9ifv2swhyrghvm6fsz5vh85cdik8225175i9msvmkh928n"; depends=[stringr]; }; - genepi = derive2 { name="genepi"; version="1.0.1"; sha256="1whhdlq9p8gmygv7464hvfz6dhm65gqq1dqls6hgpmw822zxgbd5"; depends=[]; }; + genepi = derive2 { name="genepi"; version="1.0.2"; sha256="0cms31s52r6027zc47fgd9nbr1li5vc39cajpg2fpdky4091rizz"; depends=[]; }; genepop = derive2 { name="genepop"; version="1.2.2"; sha256="13h3azszr42bzm5af8rkxw1lnd1x5c9lpawfcg3m5xgwvwzlzl3l"; depends=[Rcpp RcppProgress stringr]; }; - generalCorr = derive2 { name="generalCorr"; version="1.2.2"; sha256="1ncr3s5mpd8f2a1ijzmns380fj05xicnjmwlgfzabnrmhzh2pxcd"; depends=[lattice meboot np psych xtable]; }; + generalCorr = derive2 { name="generalCorr"; version="1.2.3"; sha256="13p1z9bshbim4gm3ckmf5vf9alvbi97zwc5zb95c8gzyc52nf1n7"; depends=[lattice meboot np psych xtable]; }; generalhoslem = derive2 { name="generalhoslem"; version="1.3.4"; sha256="0fmfhmdb16gf3v9h50vif4f3f6bm03qq7wplnmzyxa80jb60fcc0"; depends=[MASS reshape]; }; generator = derive2 { name="generator"; version="0.1.0"; sha256="0xjvnmnpdms8rrxxcz6pd8w4rnbv3ghzqv4m63zxia2l98x7z4rf"; depends=[]; }; generics = derive2 { name="generics"; version="0.1.3"; sha256="0lyhhwik0w7m5h3fbwl2f52gc1v2g6g6h6sc47sa9f58pxin213m"; depends=[]; }; @@ -10001,7 +10130,7 @@ in with self; { genpathmox = derive2 { name="genpathmox"; version="1.0"; sha256="0yxxaylcqscymhydrjcxd8gi11ih2p100j6qsdxdcifwc4sr1qi0"; depends=[cSEM diagram matrixcalc]; }; genpwr = derive2 { name="genpwr"; version="1.0.4"; sha256="0cys4zmfq07g99xywqampvmn8g0a6bjjj368d62q5xki2mi9z649"; depends=[ggplot2 MASS nleqslv]; }; genridge = derive2 { name="genridge"; version="0.6.7"; sha256="07mdkkq4j8i5x8d4yfsp2rfpf7gkcgdcsw9b2ng5f7gdnblrw0dr"; depends=[car]; }; - genscore = derive2 { name="genscore"; version="1.0.2"; sha256="0i1wg65cpyc7x1h8dbq0i6q8979lw15zhmn7zn1r8gj3nxl7my0b"; depends=[mvtnorm Rdpack stringr tmvtnorm]; }; + genscore = derive2 { name="genscore"; version="1.0.2.1"; sha256="0am6x3bxqgarb47qfsnaqnjy4kl7w2j6wf1pf182mz5qjv82mlxk"; depends=[mvtnorm Rdpack stringr tmvtnorm]; }; genset = derive2 { name="genset"; version="0.1.0"; sha256="02zldi136sfnq1i8pwb3b97zd44pjdgnfadk4bqp36wm8x95phwi"; depends=[]; }; gensphere = derive2 { name="gensphere"; version="1.3"; sha256="0cf1xmwi32x3ga9m5k7a93vdwix84ny7wxb74mddmfvb3m1v4c7g"; depends=[geometry mvmesh rgl SimplicialCubature SphericalCubature]; }; genstab = derive2 { name="genstab"; version="1.0.0"; sha256="09kg70v8qj8rbqwk0zm3xg54pmrr26l8n1s9x26s8qrsns0dgz0x"; depends=[]; }; @@ -10017,7 +10146,7 @@ in with self; { geocacheR = derive2 { name="geocacheR"; version="0.1.0"; sha256="04ckxmird6n179xvsx50cjdz046igjxxqdnz5pfxi8pdklnky20c"; depends=[dplyr magrittr stringr threewords tibble]; }; geocmeans = derive2 { name="geocmeans"; version="0.3.3"; sha256="11ki3maklaj3c4fx9cs6l8virzhzxdrkrlr231rg0bvs3hlpwagj"; depends=[dplyr fclust fmsb future_apply ggplot2 leaflet matrixStats plotly progressr Rcpp RcppArmadillo Rdpack reldist reshape2 sf shiny spdep terra tmap]; }; geodaData = derive2 { name="geodaData"; version="0.1.0"; sha256="003m5wff0q4fdlg64qispmhj2aw83isxg3ijxwkwhvi33bpwpq4z"; depends=[]; }; - geodata = derive2 { name="geodata"; version="0.5-3"; sha256="1341wia70hmiaw4cwlld5x83mc10b85ji0mxfc75ar4w4yzplh6z"; depends=[terra]; }; + geodata = derive2 { name="geodata"; version="0.5-8"; sha256="1d6kaqfnk9dh4r69002bnq3hdg7mnjsi12b35lk38fq2hpd868dx"; depends=[terra]; }; geodetector = derive2 { name="geodetector"; version="1.0-4"; sha256="00zyx68jjl4mldah8mxfvwvv5yfkd4f1s2rlx6fsw6h8y2cwzj3l"; depends=[maptools rgdal rgeos sp]; }; geodimension = derive2 { name="geodimension"; version="1.0.0"; sha256="0mh16cdac7vi8zv98g3s06109fpadan441zd80x9yfsypx75sdz0"; depends=[dplyr generics magrittr pander readr rlang sf tibble tidyr tidyselect]; }; geodist = derive2 { name="geodist"; version="0.0.8"; sha256="09758v53r057rjsn844g2dc455ccndw1qlndl1xsm2gcp6ch2hr3"; depends=[]; }; @@ -10027,27 +10156,28 @@ in with self; { geofabrik = derive2 { name="geofabrik"; version="0.1.0"; sha256="0k92gmivccw3kbgkb9bjw7pxc4zc3zdj35x0cbzmjq0k3qxq8ad0"; depends=[]; }; geofacet = derive2 { name="geofacet"; version="0.2.0"; sha256="1aylx2hwqk75y73az1zf0s5mjww77d7i9kafbkzw383f0i5qx42w"; depends=[geogrid ggplot2 ggrepel gridExtra gtable imguR rnaturalearth sf sp]; }; geofd = derive2 { name="geofd"; version="2.0"; sha256="1rsgy4nxfp1gi4vwh8zfzksr6sr2ga31kmd56q5m56gw530570ra"; depends=[fda]; }; - geofi = derive2 { name="geofi"; version="1.0.8"; sha256="01hrknkbmm7lwbpdpgpqylya6fc5kwd19bas6wyp1dyrdpn8xj5x"; depends=[curl dplyr httpcache httr purrr rlang sf xml2 yaml]; }; + geofi = derive2 { name="geofi"; version="1.0.9"; sha256="0z5cisrfq18arsq8n4p8xiqc8z2wn8riz8l9s5lzihc50s87kh9p"; depends=[curl dplyr httpcache httr purrr rlang sf xml2 yaml]; }; geogrid = derive2 { name="geogrid"; version="0.1.1"; sha256="0b8afwgj9x56z6zh525y7qkiwbv77mjcw3v19kfba0426jn4vi87"; depends=[Rcpp RcppArmadillo rgeos sf sp]; }; geohashTools = derive2 { name="geohashTools"; version="0.3.2"; sha256="04xn0512b36rn473a8j025x5dqwi8kc45rr3iap5ai4wdcrb712z"; depends=[]; }; geojson = derive2 { name="geojson"; version="0.3.4"; sha256="0fvlw06hjb7z0mfsf8vhv1dchdjlvklyzjqlaydjzbwb1kvbhpq7"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; }; geojsonR = derive2 { name="geojsonR"; version="1.1.1"; sha256="0l4zwyf3f827jpwbsv097d0h8i7pjwpkvdr89hc6vv9pzavfymhp"; depends=[R6 Rcpp RcppArmadillo]; }; - geojsonio = derive2 { name="geojsonio"; version="0.11.0"; sha256="0rgwfp716197shy8mm2jia3cvz3472sbrmfryk5ipdik7j0xpffh"; depends=[crul geojson geojsonsf jqr jsonlite lifecycle magrittr readr sf sp V8]; }; + geojsonio = derive2 { name="geojsonio"; version="0.11.1"; sha256="13nbgaz06gqgzn9yam0psikkpglgk6w66gqdh1cj4320jid09n3s"; depends=[crul geojson geojsonsf jqr jsonlite lifecycle magrittr readr sf sp V8]; }; geojsonlint = derive2 { name="geojsonlint"; version="0.4.0"; sha256="0l6xlf6l9shyvdd2ghkhcgbkxpmycapfpxakzbvd92j1x8dmr9az"; depends=[crul jsonlite jsonvalidate V8]; }; geojsonsf = derive2 { name="geojsonsf"; version="2.0.3"; sha256="1la6zfzv14ascwds0bp67d7x3am0v14mylc4b2lyd0nrf93a2p17"; depends=[geometries jsonify rapidjsonr Rcpp sfheaders]; }; geoknife = derive2 { name="geoknife"; version="1.6.10"; sha256="0hqcmm4n2svv643pg8q1v1kq5rb5j80cazdibnva1diz6brd2v76"; depends=[curl httr progress sf whisker xml2]; }; - geomander = derive2 { name="geomander"; version="2.1.0"; sha256="1ban8kss608fx4w64xl3m9zc1bf05alqfqrgv35rdrxw756iqv6a"; depends=[censable cli dataverse dplyr geos ggplot2 magrittr Rcpp readr rlang sf stringr tibble tidyr tigris]; }; + geomander = derive2 { name="geomander"; version="2.2.1"; sha256="1nbh40ijm27ycm147ldjrv3yccbl9wb41r3k3czy014v32vgdh07"; depends=[censable cli dataverse dplyr geos ggplot2 magrittr Rcpp readr rlang sf stringr tibble tidyr tinytiger]; }; geomapdata = derive2 { name="geomapdata"; version="2.0-0"; sha256="0mq7hxyyi1ikwdmh7ns9rnkvp2q5s48441i8msx8621scxdv6ga4"; depends=[]; }; geomaroc = derive2 { name="geomaroc"; version="0.1.1"; sha256="09j48ms1j7sqakznd2bj6sks1b6ckhch7ydhbdky4jk2acvl7lqw"; depends=[jsonlite sf]; }; geomerge = derive2 { name="geomerge"; version="0.3.3"; sha256="043dg8q9jjfql4wlya17zqz33wg6c6crvxbsq3srlp7mppvapylh"; depends=[geosphere ggplot2 gridExtra lubridate raster scales sp spdep]; }; geometa = derive2 { name="geometa"; version="0.7-1"; sha256="18gr82k665y00h8mrq97mrr9l7p4m9m8b49dbgsh22hbz7j7c542"; depends=[crayon httr jsonlite keyring R6 readr XML]; }; geometries = derive2 { name="geometries"; version="0.2.2"; sha256="0hcisrr3vfsksmcw2lv2927dcfazxsx5xy484ww539zqw0yhdlrj"; depends=[Rcpp]; }; geometry = derive2 { name="geometry"; version="0.4.7"; sha256="0fq1sbjlc02idfsnvily7hgi6zgjvrjh7c57wz166k8vyl2l484n"; depends=[linprog lpSolve magic Rcpp RcppProgress]; }; + geomod = derive2 { name="geomod"; version="0.1.0"; sha256="06a211cyhcicy5arpjxiglami56plkm6ybxbzbmjd0z6yn9yyd38"; depends=[arm caret Cubist e1071 kernlab nnet qrnn quantregForest randomForest ranger raster rasterVis rpart sp]; }; geomorph = derive2 { name="geomorph"; version="4.0.5"; sha256="0fricj9cahf807nk0l5hb5x8442cx462jzvrcdkh42v1bbwl23ch"; depends=[ape ggplot2 jpeg Matrix rgl RRPP]; }; geomtextpath = derive2 { name="geomtextpath"; version="0.1.1"; sha256="0i5m1v8mn23krp7ha502v3kv5wpwdy8na4x3nqlg3zld293dybz4"; depends=[ggplot2 rlang scales systemfonts textshaping]; }; geonames = derive2 { name="geonames"; version="0.999"; sha256="0yz1b7y3vwa4izrhpry4n3iwzb7y67s5p3kgnd7d29cl5pcbpmqx"; depends=[rjson]; }; geonapi = derive2 { name="geonapi"; version="0.6-1"; sha256="1gmz05nwqbx4dc3zpd58an86101r6345cja386dgi2hyggg5cqbn"; depends=[geometa httr keyring openssl R6 XML]; }; - geonetwork = derive2 { name="geonetwork"; version="0.4.1"; sha256="04vf39hxl1a2kbgqc054xg9w6hbd3fwag6sy0j8a9agrd5wgks7h"; depends=[geosphere igraph rgdal sf sp]; }; + geonetwork = derive2 { name="geonetwork"; version="0.5.0"; sha256="0yg6pp2ya62qws6jdjxmhqjh5gdn4cfm6zbljazc35xf7d97jjnx"; depends=[geosphere igraph sf]; }; geophys = derive2 { name="geophys"; version="1.4-1"; sha256="1s64sbr0chv0z2vaw059khfkv8iga1kr6428kkglgafq5x2d6h3q"; depends=[cluster GEOmap RFOC RPMG RSEIS]; }; geos = derive2 { name="geos"; version="0.2.2"; sha256="0hmiskdwzlgabwhayw7hwi6nqria976xzz6xm95644w7fx723wd7"; depends=[libgeos wk]; }; geosapi = derive2 { name="geosapi"; version="0.6-5"; sha256="0gwzr1ya5a32smwi7841abh3j8zipyg3y430qbdgnchm1f349x20"; depends=[httr keyring openssl R6 readr XML]; }; @@ -10058,11 +10188,11 @@ in with self; { geosphere = derive2 { name="geosphere"; version="1.5-18"; sha256="1h6sqvxwxv22js6hz4s8sjk50ygw0y34icbbbdb2v36ca3q6zzwr"; depends=[Rcpp sp]; }; geospt = derive2 { name="geospt"; version="1.0-2"; sha256="1814nn0naxvbn0bqfndpmizjbqcs6rm87g2s378axkn6qpii4bh8"; depends=[fields genalg gsl gstat limSolve MASS minqa plyr sgeostat sp TeachingDemos]; }; geosptdb = derive2 { name="geosptdb"; version="1.0-1"; sha256="1n1jvigavcxlbc5wki74lnhax3060i44m1cvkcr664wsjqhx3kl2"; depends=[FD fields geospt gsl limSolve minqa sp StatMatch]; }; - geostan = derive2 { name="geostan"; version="0.4.1"; sha256="0ld8mhlii8hrzlxqm9wj4kzwafink5zm45mah804qa7p4i78l363"; depends=[BH ggplot2 gridExtra MASS Matrix Rcpp RcppEigen RcppParallel rstan rstantools sf signs spdep StanHeaders truncnorm]; }; + geostan = derive2 { name="geostan"; version="0.5.0"; sha256="0yhnqqmmjxradv0nfm2w4z03cq6cf5ras2fh0g0fsr2qbs8hajim"; depends=[BH ggplot2 gridExtra MASS Matrix Rcpp RcppEigen RcppParallel rstan rstantools sf signs spdep StanHeaders truncnorm]; }; geostats = derive2 { name="geostats"; version="1.6"; sha256="0fmp6883a3xqay3wcc3bz7czhyik1mki3zn5z195iag11yvc5wr6"; depends=[]; }; geotools = derive2 { name="geotools"; version="0.1"; sha256="0d0vf9dvrrv68ivssp58qzaj8vra26ms33my097jmzmgagwy1spd"; depends=[]; }; geotopbricks = derive2 { name="geotopbricks"; version="1.5.4"; sha256="1mn15mchxkv9qqjrcsyx0pf56sdz0ba7i5jd1ci1ilr6rig81ckz"; depends=[raster rgdal stringr zoo]; }; - geouy = derive2 { name="geouy"; version="0.2.6"; sha256="038ggx0kk1adcmw2mb0yal9c55hypwhcgqn3a30l4nlcdqp7z4mb"; depends=[assertthat curl dplyr fs ggplot2 ggspatial ggthemes glue magrittr raster rjson rlang sf sp stringr viridis]; }; + geouy = derive2 { name="geouy"; version="0.2.7"; sha256="0wwz54jyq0qr3nw8zsnz4s0jl5j96xjarqxwzrkv1y1ni9g38gjw"; depends=[assertthat curl dplyr fs ggplot2 ggspatial ggthemes glue magrittr raster rjson rlang sf sp stringr tidyselect viridis]; }; geoviz = derive2 { name="geoviz"; version="0.2.2"; sha256="1wx1p72532xpg6y3rlrvaiwx57xad3d9fvy9mbadvj418xwxnmim"; depends=[abind chron curl dplyr ggplot2 glue magrittr png progress purrr raster readr rgdal rgeos rgl rlang sf slippymath sp stringr tibble tidyr]; }; geovol = derive2 { name="geovol"; version="1.0"; sha256="13ll9jyh1fadm2rpfvja0fnqnpr6haivz1vmmpi6yc95rpl4234b"; depends=[zoo]; }; geozoo = derive2 { name="geozoo"; version="0.5.1"; sha256="0g91yhg7zw1bp0lxxblr2irckjg2rl4pg1vgglccnmxkzn0ji2qi"; depends=[bitops]; }; @@ -10073,7 +10203,7 @@ in with self; { gesisdata = derive2 { name="gesisdata"; version="0.1.0"; sha256="02xjpw41gm3778lj01kcwjx0lr1i95a0wlrfvs0r5xlajq13jr67"; depends=[dplyr magrittr rio RSelenium stringr]; }; gesso = derive2 { name="gesso"; version="1.0.2"; sha256="0i7a927mbll8mlisxb0ic62fvq1wp5v0m69n7zkhcjabkxr7gbn3"; depends=[BH bigmemory dplyr Matrix Rcpp RcppEigen RcppThread]; }; gestalt = derive2 { name="gestalt"; version="0.2.0"; sha256="0p8xrlmc81irh9s2c57sxgmvdjmmgmya0h31904c4cwi9aa32f4z"; depends=[rlang]; }; - gestate = derive2 { name="gestate"; version="1.5.0"; sha256="028ij0yyqrwaf5c1a7qkgl0r0m9n98vn182brx923mfxr9gji6pn"; depends=[doParallel foreach shiny shinythemes survival]; }; + gestate = derive2 { name="gestate"; version="1.6.0"; sha256="1b6zyrph3h7cgnl8rxj3yv14mgnvxvgk26m84k5v8cbnly9ky2k2"; depends=[doParallel foreach shiny shinythemes survival]; }; gesttools = derive2 { name="gesttools"; version="1.3.0"; sha256="1lrjr60vrl0j31hb12i8c78k5554vwpgj8pzzrhbdhmb6y0972fx"; depends=[DataCombine geeM magrittr nnet rsample testthat tibble tidyr tidyselect]; }; getDTeval = derive2 { name="getDTeval"; version="0.0.2"; sha256="16y24jhy9k1adlmf6yqzc8kla2vw7r0c6zd52jpfkiljxwkm4634"; depends=[data_table formulaic microbenchmark]; }; getLattes = derive2 { name="getLattes"; version="0.2.0"; sha256="1rrd9x9jmnsy0770c86lqws4a6b2zxf3384h1dcvzrmlk20hhqxw"; depends=[dplyr janitor pipeR purrr rlang tibble xml2]; }; @@ -10084,7 +10214,7 @@ in with self; { getmstatistic = derive2 { name="getmstatistic"; version="0.2.2"; sha256="100m5cbwx9anlh1hzjv7d1h1viqsxb0bx0ksc1dsjx3gqrf77q1n"; depends=[ggplot2 gridExtra gtable metafor psych stargazer]; }; getopt = derive2 { name="getopt"; version="1.20.3"; sha256="0zzmzgwl9a4y3s34600vmih22d6y32294f9bvxrnmffnvkgmy7sk"; depends=[]; }; gets = derive2 { name="gets"; version="0.37"; sha256="1h7hn8n08sqnygbzyiq9zg11b5i9g6islc72c0qypx4j4wba5z55"; depends=[zoo]; }; - getspanel = derive2 { name="getspanel"; version="0.1.3"; sha256="10b597gfqcm5gv83g3wrmys54dsnm1a1034rsmn76znhj9ndxvm8"; depends=[fastDummies gets ggplot2 Matrix mvtnorm]; }; + getspanel = derive2 { name="getspanel"; version="0.1.4"; sha256="18lgcaz8vqzp2pjld9cc2gkq42nk8216rgqsda8wdynsxc697wr2"; depends=[fastDummies gets ggplot2 Matrix mvtnorm]; }; getspres = derive2 { name="getspres"; version="0.2.0"; sha256="190y4qrm1wawp0787zhw3g8h9s2smacvvxbs70pxbhysq4bkzcdd"; depends=[colorRamps colorspace dplyr metafor plotrix RColorBrewer]; }; gettz = derive2 { name="gettz"; version="0.0.5"; sha256="0dgzw5mji5983588vj6q2kyjv9dngmrd0ilrkhfc3b4ngvfq61mf"; depends=[]; }; getwiki = derive2 { name="getwiki"; version="0.9.0"; sha256="1dj91hc65l84yhzdl7i05s7nw0ybgijjs2g2dxgfmsvxnj10fgby"; depends=[jsonlite]; }; @@ -10097,13 +10227,12 @@ in with self; { gfiUltra = derive2 { name="gfiUltra"; version="1.0.0"; sha256="1n6sp7h0ys92mqixznrs2j8kmban3mx8swrwdpxgxc6vxycky8d8"; depends=[lazyeval mvtnorm SIS]; }; gfilmm = derive2 { name="gfilmm"; version="2.0.5"; sha256="0mn2z4aihz0anpm6d0cpyabhbd88x1cp0wgwxl5hgvkw547818pb"; depends=[forcats lazyeval Matrix Rcpp RcppEigen spatstat spatstat_geom]; }; gfilogisreg = derive2 { name="gfilogisreg"; version="1.0.2"; sha256="1825xaz4xjnhpmfrim6c9sfr50wyvpbmbnzbvvjqrn8d2gwcmim6"; depends=[BH EigenR lazyeval rcdd Rcpp RcppArmadillo roptim spatstat spatstat_geom]; }; - gfoRmula = derive2 { name="gfoRmula"; version="1.0.2"; sha256="12xl64qh25rbpzcd2zlpadldalfsn0hkrx12mgznxk5r841iiy9d"; depends=[data_table ggplot2 ggpubr nnet progress stringr survival truncnorm truncreg]; }; + gfoRmula = derive2 { name="gfoRmula"; version="1.0.3"; sha256="1f6wddkj3mshk68qbkjfimwb8ws3xflnldilgy8h0dbcf7f14hyz"; depends=[data_table ggplot2 ggpubr nnet progress stringr survival truncnorm truncreg]; }; gfonts = derive2 { name="gfonts"; version="0.2.0"; sha256="19ja087k767bq71v2w4jcpynd62ysrqmjf6rpfnmmd40aanyxqkj"; depends=[crayon crul glue htmltools jsonlite shiny]; }; gfpop = derive2 { name="gfpop"; version="1.1.1"; sha256="0jm7ri25qhkc80s4vfz2p9516m7wl0x8fcci6mggm4mc4ksx78f4"; depends=[Rcpp]; }; gg_gap = derive2 { name="gg.gap"; version="1.3"; sha256="0m66050ryn31xmsmmikjsssllasvjdmp9yjbwfdwfpwdv106zn9h"; depends=[cowplot ggplot2]; }; ggBubbles = derive2 { name="ggBubbles"; version="0.1.4"; sha256="116rl8j0s9xwhh9jl5yj9fspkhv2zrirbx9247hhns9ngrdn4i3x"; depends=[dplyr ggplot2]; }; ggChernoff = derive2 { name="ggChernoff"; version="0.3.0"; sha256="0dkr3vl4a3css19j53x1c1gxxgjg57d444ahxrrrxsyva49lnq1y"; depends=[ggplot2 scales]; }; - ggDCA = derive2 { name="ggDCA"; version="1.1"; sha256="0jpg7n6nk2jgq668ff0l9zk26zk39abc74f6w5x8gf4zsb8y0zp9"; depends=[base_rms do ggplot2 rms set survival]; }; ggDoE = derive2 { name="ggDoE"; version="0.7.8"; sha256="1732jbrqhygip1g8l7zlsz57bqkmandh15w5r94nm1g6s48f7aak"; depends=[data_table ggplot2 insight]; }; ggDoubleHeat = derive2 { name="ggDoubleHeat"; version="0.1.1"; sha256="0s9dpjkphmavvhcrsdjr7i4nq39cp55k43y6jhkx2glc198a73fq"; depends=[ggnewscale ggplot2 rlang]; }; ggESDA = derive2 { name="ggESDA"; version="0.2.0"; sha256="0abjjs1syk9w5fqs778njkz3f92kil1617239hzdcjy67hbbf3c0"; depends=[dplyr ggforce ggplot2 ggpubr ggthemes gridExtra gtools magrittr prodlim R6 rlang RSDA stringr tibble tidyr tidyverse vctrs]; }; @@ -10127,8 +10256,10 @@ in with self; { gganimate = derive2 { name="gganimate"; version="1.0.8"; sha256="1jabs9qr0319w508kdsk5nmzfhl6nzykpp1by7l639yfvrfqcbd1"; depends=[ggplot2 glue progress rlang scales stringi tweenr]; }; ggarchery = derive2 { name="ggarchery"; version="0.4.2"; sha256="1vbknccfr18gawia353appvj3fc3ic8wrkgg0rd2aiz48av496yz"; depends=[dplyr ggplot2 glue magrittr purrr rlang tidyr]; }; ggasym = derive2 { name="ggasym"; version="0.1.6"; sha256="1vgsqq2m4w5clmf27mmj6jqn2s8m1izz3gj2bxqpmdcvzf5vxkgr"; depends=[dplyr ggplot2 magrittr purrr rlang scales stringr tibble tidyr]; }; - ggbeeswarm = derive2 { name="ggbeeswarm"; version="0.7.1"; sha256="14mc00i107rww3al5q3rrqmd1v0ck06jipfhzqi23g29a4rm05gl"; depends=[beeswarm ggplot2 lifecycle vipor]; }; - ggblanket = derive2 { name="ggblanket"; version="1.7.0"; sha256="0dah9nky18b1lg8k8n03gn1qhgldfpclyjrm44rkdjlscqcjncj8"; depends=[dplyr forcats ggplot2 hms lubridate magrittr purrr rlang scales snakecase stringr tidyr tidyselect viridis]; }; + ggautomap = derive2 { name="ggautomap"; version="0.3.2"; sha256="0fy1saym15l3d76ix26kz9il3nzsypchh028vigcvan7g0yg7168"; depends=[cartographer cli dplyr ggmapinset ggplot2 packcircles rlang sf tidyr vctrs]; }; + ggbeeswarm = derive2 { name="ggbeeswarm"; version="0.7.2"; sha256="1rcw54isai05np4fj19vcxx2vcxq7y2nm3az9m8xwbc9pdjs4z7x"; depends=[beeswarm cli ggplot2 lifecycle vipor]; }; + ggblanket = derive2 { name="ggblanket"; version="2.0.0"; sha256="0aifhpipi0mkajrnwb9lqiwxqvq12z220bdbh09n8my3ghc28rk4"; depends=[dplyr forcats ggplot2 hms lubridate magrittr purrr rlang scales snakecase stringr tidyr tidyselect viridis]; }; + ggblend = derive2 { name="ggblend"; version="0.1.0"; sha256="0wzy9lnvqxjl3511vk1y6nxpvhk9hvk1xq18bbwsv6886npls56z"; depends=[ggplot2 rlang]; }; ggborderline = derive2 { name="ggborderline"; version="0.2.0"; sha256="1acb3z2dwasmn4ngc7wqk3y4n34ah3fhdxsbdl3dmbc75nmdsn5a"; depends=[cli ggplot2 rlang vctrs]; }; ggbrain = derive2 { name="ggbrain"; version="0.8.1"; sha256="1nicqirp69k0ish7j3mr7zz82w2lj5jcvmn7cbx764r62s5pscvd"; depends=[checkmate data_table dplyr ggnewscale ggplot2 ggrepel glue imager Matrix patchwork Rcpp RcppArmadillo rlang RNifti tibble tidyr tidyselect]; }; ggbreak = derive2 { name="ggbreak"; version="0.1.1"; sha256="1jscvyphjx837lbb9mxdqaaknkp8krgapak91ykv1xv150xwr7cs"; depends=[aplot ggfun ggplot2 ggplotify rlang]; }; @@ -10140,24 +10271,25 @@ in with self; { ggcorrplot = derive2 { name="ggcorrplot"; version="0.1.4"; sha256="186a0mpdpipp24fjbd52l1gdgpqm6vl83ff8069d8nngyqbrx0jr"; depends=[ggplot2 reshape2]; }; ggcorset = derive2 { name="ggcorset"; version="0.4.5"; sha256="18i7xj3h0v556y2m7b1cnlqhzfp9jv5gpchhz5rmm8d6y3k4czii"; depends=[dplyr gghalves ggplot2 ggstance]; }; ggcoverage = derive2 { name="ggcoverage"; version="0.7.1"; sha256="088gyc6054d8xx3k3pg5i40cnvyryyq4k6rn214li0yslj3fphyi"; depends=[Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggbio ggh4x ggplot2 ggrepel IRanges magrittr patchwork RColorBrewer reshape2 rlang Rsamtools rtracklayer S4Vectors scales seqinr]; }; - ggdag = derive2 { name="ggdag"; version="0.2.8"; sha256="1kfarzbcljmbcnkkdgg1isc9hcwbrbncr7zissh6qymasganf7zg"; depends=[dagitty dplyr forcats ggplot2 ggraph ggrepel igraph magrittr pillar purrr rlang stringr tibble tidygraph]; }; + ggdag = derive2 { name="ggdag"; version="0.2.10"; sha256="1vn93yys6lnv0nrhxhnfjb6p12wzhkc9dx8fxn7jci1zyqkb5kb6"; depends=[dagitty dplyr forcats ggplot2 ggraph ggrepel igraph magrittr pillar purrr rlang stringr tibble tidygraph]; }; ggdark = derive2 { name="ggdark"; version="0.2.1"; sha256="1w93g2j4g45x9s841v9zi18lxzda81ipa13fajqc6p9xk8frvgrf"; depends=[ggplot2]; }; - ggdemetra = derive2 { name="ggdemetra"; version="0.2.3"; sha256="1vyjg7kzf9xq0kxrcjzr2nmd74dc35i9kpahz1wf9jvvq8l33w60"; depends=[ggplot2 ggrepel gridExtra RJDemetra]; }; + ggdemetra = derive2 { name="ggdemetra"; version="0.2.5"; sha256="1ww22lx1viy7r0nldjzzaskbh3wzzp90nyi2dxigzinb0cm7000v"; depends=[ggplot2 ggrepel gridExtra RJDemetra]; }; ggdendro = derive2 { name="ggdendro"; version="0.1.23"; sha256="1f4fz9llmbpb8gh90aid7dvriadx16xdhsl7832yw4pyqj4fjcrs"; depends=[ggplot2 MASS]; }; ggdensity = derive2 { name="ggdensity"; version="1.0.0"; sha256="01ym1af6w39zg6xh5mls8kwl4mg0lpjd94j0hm2xrgl39llpwx6r"; depends=[ggplot2 isoband MASS scales tibble vctrs]; }; - ggdist = derive2 { name="ggdist"; version="3.2.1"; sha256="0a72yc58wr51xm6hp4rpqwd93hd36cbl6g7rwmdxp7q4kvcnl0bn"; depends=[distributional dplyr ggplot2 glue HDInterval numDeriv quadprog rlang scales tibble tidyselect vctrs withr]; }; + ggdist = derive2 { name="ggdist"; version="3.3.0"; sha256="0b15b972wrllsvqqn0nc2c81fd9jl618fvqsfi50hjxwwpdach8l"; depends=[cli distributional dplyr ggplot2 glue numDeriv quadprog rlang scales tibble tidyselect vctrs withr]; }; ggdmc = derive2 { name="ggdmc"; version="0.2.6.0"; sha256="1gncv7npl548k3zd41x2gwg5qywn5rp6zb4i7ga78sy77mvi3x92"; depends=[coda data_table ggplot2 matrixStats Rcpp RcppArmadillo]; }; gge = derive2 { name="gge"; version="1.7"; sha256="1lis0w4n0fns1fsl95p1pbvbqkb3vlwzb5pk5hqlzadjrnrs6gzw"; depends=[nipals reshape2]; }; ggeasy = derive2 { name="ggeasy"; version="0.1.4"; sha256="1dppcffkyr6ybpz17zkq97g0p2hs1f8iwg6vwrw124pbgr065dr0"; depends=[ggplot2 rlang]; }; ggedit = derive2 { name="ggedit"; version="0.3.1"; sha256="10fbjqq6l7wfibi65mq423w7v8gymr541if749qhsnd9b2jyhaj5"; depends=[colourpicker dplyr ggplot2 magrittr miniUI plyr purrr rlang rstudioapi scales shiny shinyAce shinyBS tidyr]; }; - ggeffects = derive2 { name="ggeffects"; version="1.2.1"; sha256="0pzg1mddy1s5z5cmvmdkk6hqhipdr866z1y5qh4c6n93svwlyvnj"; depends=[insight]; }; + ggeffects = derive2 { name="ggeffects"; version="1.2.2"; sha256="1nmlx64g2x3xprhm99axw2n1agmbhwz2ck1wy16a8ach6az7rf4x"; depends=[insight]; }; ggenealogy = derive2 { name="ggenealogy"; version="1.0.1"; sha256="19six9ln1yaqv268abm9qvb61nl8zdz3gghwr8hmwsa94xwhzhkq"; depends=[ggplot2 igraph plotly plyr reshape2 tibble]; }; ggetho = derive2 { name="ggetho"; version="0.3.7"; sha256="0bdqx3x42jp22bs297nhdgzvywhq4cy0lwmwprl7vmjjh8lwvkxk"; depends=[behavr cli data_table ggplot2 labeling rlang scales stringr]; }; ggfan = derive2 { name="ggfan"; version="0.1.3"; sha256="1p3hbznpsaznlk0lnjyazc130www0p5919qplg3kspng7qh8p22w"; depends=[colorspace dplyr ggplot2 rstan]; }; ggfittext = derive2 { name="ggfittext"; version="0.10.0"; sha256="06xfv552nhw13wc8dixyqhhmw5zh8hphrabw090nzb33cpfwzin8"; depends=[ggplot2 gridtext shades stringi]; }; + ggflowchart = derive2 { name="ggflowchart"; version="1.0.0"; sha256="0n93ydnj4q95a67ch2i3yjg7f05vi2xdb4jss620ccaj33chwqzv"; depends=[dplyr ggplot2 igraph rlang tibble tidyr]; }; ggfocus = derive2 { name="ggfocus"; version="1.0.0"; sha256="03q0rz7flm8sc8hrlkcm5fz66qiyxb8z8q4bh9dglhw0jc8q1fvb"; depends=[dplyr ggplot2 magrittr RColorBrewer rlang]; }; ggforce = derive2 { name="ggforce"; version="0.4.1"; sha256="0wqq8l7lq96k4w0vq12jcg7clvgia8s35jjbqq1s0py4cgxijhml"; depends=[cli ggplot2 gtable lifecycle MASS polyclip Rcpp RcppEigen rlang scales systemfonts tidyselect tweenr vctrs withr]; }; - ggformula = derive2 { name="ggformula"; version="0.10.2"; sha256="0xb39gjn6q7va1d1fhvf2dw9428s1q13wasx4y3cz2f0lls1r2wl"; depends=[ggforce ggplot2 ggridges ggstance labelled magrittr mosaicCore rlang scales stringr tibble]; }; + ggformula = derive2 { name="ggformula"; version="0.10.4"; sha256="07d9sq0dqi0g5x9h58icfk1f4hgg1xz4mhbp2z2rxg9qgs74fvdj"; depends=[ggforce ggplot2 ggridges ggstance labelled magrittr mosaicCore rlang scales stringr tibble]; }; ggfortify = derive2 { name="ggfortify"; version="0.4.16"; sha256="05h3a4ycain0y621anjpjphsjlhpayb2nnd6n70rlymrbilfw6xv"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; ggfun = derive2 { name="ggfun"; version="0.0.9"; sha256="04kn367mzgrfwnwz97vw5jqp2kig94hmxmhyyic7ddvk3sfhwx2w"; depends=[ggplot2 rlang]; }; ggfx = derive2 { name="ggfx"; version="1.0.1"; sha256="1lys5lzlilzvd6dm7rkxv7nvnp80fajl5yzhpwcbb5az5832ik27"; depends=[ggplot2 gtable magick ragg rlang]; }; @@ -10173,10 +10305,11 @@ in with self; { ggheatmap = derive2 { name="ggheatmap"; version="2.2"; sha256="13cf3xk5drb6dfr3gcbgfi0hk6akk9b3g9f3c2jy6hz8rz5xnyn6"; depends=[aplot factoextra ggplot2 ggpubr patchwork tibble tidyr]; }; gghighlight = derive2 { name="gghighlight"; version="0.4.0"; sha256="0vfcn3gg6j7g20n2z1iwr94jnpqn0zl5j9jfc8bnbsrmz49dzqpd"; depends=[dplyr ggplot2 ggrepel lifecycle purrr rlang tibble]; }; gghilbertstrings = derive2 { name="gghilbertstrings"; version="0.3.3"; sha256="0b3xp1w6fkkmjh7gihhfkp4npx553a75bvsal3w4j57xa34l8rap"; depends=[dplyr ggplot2 lifecycle magrittr Rcpp rlang tibble]; }; + gghist = derive2 { name="gghist"; version="0.1.0"; sha256="0ncxx2ckc78gaa9dyddyli1wca7kkz33v13mplhnxd33gkk9pxmz"; depends=[ggplot2]; }; ggimage = derive2 { name="ggimage"; version="0.3.2"; sha256="083h57916gisd0y4vwlxyypidy3armnkxkyi02rxrx5q2bqn9gix"; depends=[ggfun ggplot2 ggplotify jsonlite magick scales tibble withr]; }; ggimg = derive2 { name="ggimg"; version="0.1.2"; sha256="1ynfq8lwlw851j00k7mm63w5yyqkd7v67fs8g2nwxk7ac0wb44ph"; depends=[abind ggplot2 jpeg png]; }; gginference = derive2 { name="gginference"; version="0.1.3"; sha256="1r960cglnkii8xih4r1r7wd857jqn53f08zi9dnj54bpqrs374zx"; depends=[ggplot2 rlang]; }; - gginnards = derive2 { name="gginnards"; version="0.1.1"; sha256="0rwg9yan73ca4s8nd8x6xyjs68mvz4lxns5xmkvb8lf0fs9pkahn"; depends=[ggplot2 magrittr rlang stringr tibble]; }; + gginnards = derive2 { name="gginnards"; version="0.1.2"; sha256="1z4wbh4biywvxr29j1rll6h4yh3hlhrypa5903pmzvpgdy9n2baw"; depends=[ggplot2 magrittr rlang stringr tibble]; }; ggip = derive2 { name="ggip"; version="0.3.2"; sha256="0mg3p3lq3afw96ddk89v62jjd8ii7nhdcwlmdnmdxrw6awcmvyhk"; depends=[cli dplyr ggplot2 ipaddress Rcpp rlang tidyr vctrs]; }; ggiraph = derive2 { name="ggiraph"; version="0.8.7"; sha256="0hg4wbgwlrib2zvrahmnsdixnyq2pi13liaz65zc8cg85mn2fr2n"; depends=[ggplot2 htmltools htmlwidgets purrr Rcpp rlang systemfonts uuid vctrs]; }; ggiraphExtra = derive2 { name="ggiraphExtra"; version="0.3.0"; sha256="0q8ppixw5i1hpphmswpw6lvq7gx8rx4gfs2b8d31wbn32ziiv2rk"; depends=[dplyr ggiraph ggplot2 magrittr mgcv mycor plyr ppcor purrr RColorBrewer reshape2 scales sjlabelled sjmisc stringr tidyr]; }; @@ -10188,7 +10321,7 @@ in with self; { gglorenz = derive2 { name="gglorenz"; version="0.0.2"; sha256="1kag8p2chd0sbn8affpxzi4aawpm71ls97dwdgx7mxxfwkdb2q0y"; depends=[ggplot2 ineq]; }; ggm = derive2 { name="ggm"; version="2.5"; sha256="11wc6k2kj2ydy0dyks5mbvbhxm1r43id87anl1jg6dn0yv4m78di"; depends=[graph igraph]; }; ggmap = derive2 { name="ggmap"; version="3.0.2"; sha256="1bnwbk2z31xgxmvq2rawqz7dlbmc0nbhr4d4pmgimjnlbyby6pxs"; depends=[bitops cli digest dplyr ggplot2 glue httr jpeg magrittr plyr png purrr RgoogleMaps rlang scales stringr tibble tidyr]; }; - ggmapinset = derive2 { name="ggmapinset"; version="0.2.3"; sha256="12g41vgvwgw30cfmaawk0p6wi6v06j8nc7dc4zpns8r473zsr0wf"; depends=[cli ggplot2 rlang sf]; }; + ggmapinset = derive2 { name="ggmapinset"; version="0.3.0"; sha256="1cakn2iqjk117ngb0ssc68hxx8s4mgc8z8bl6mfvwffvjsyjyxyp"; depends=[cli ggplot2 rlang sf]; }; ggmatplot = derive2 { name="ggmatplot"; version="0.1.2"; sha256="0k062kqa9hrq1iyjwjj670sdk559zx1nxpbkk0sxkda2h235lxjr"; depends=[ggplot2]; }; ggmcmc = derive2 { name="ggmcmc"; version="1.5.1.1"; sha256="1y6ya2qihm8h6ds84akhmsxn9c8jriw03wakaqzsmi21agz87n21"; depends=[dplyr GGally ggplot2 tidyr]; }; ggmice = derive2 { name="ggmice"; version="0.0.1"; sha256="06asqqzjnlx8hl63nfl83l8x1bga59vhn4x2sl8j0v6bmcj0fnqm"; depends=[dplyr ggplot2 magrittr mice purrr rlang stringr tidyr]; }; @@ -10199,7 +10332,7 @@ in with self; { ggmuller = derive2 { name="ggmuller"; version="0.5.6"; sha256="069y6wf9lbkz32kmkrc61vjc0p9fpr5191103dvaz0nj6gpd686a"; depends=[ape dplyr ggplot2]; }; ggmulti = derive2 { name="ggmulti"; version="1.0.6"; sha256="0cynzl5aamm8ra6jz3j6n2frd680f35p3f38gcx12zsk1vzsl4fr"; depends=[cli dplyr ggplot2 tidyr]; }; ggnetwork = derive2 { name="ggnetwork"; version="0.5.12"; sha256="1kg9354f39asq5baryh3zzzdl54g75mn1pxdr3pws9d2q5i8cdkl"; depends=[ggplot2 ggrepel igraph network sna]; }; - ggnewscale = derive2 { name="ggnewscale"; version="0.4.8"; sha256="004p5ai6rc5y8f6966k894jzw9v3m4zy36z50yapig7c85lzmzn7"; depends=[ggplot2]; }; + ggnewscale = derive2 { name="ggnewscale"; version="0.4.9"; sha256="1vy0i2gk57k06gzywy8hdhl2k9511c5mhy9dzvkzlagqihp5b8bh"; depends=[ggplot2]; }; ggnormalviolin = derive2 { name="ggnormalviolin"; version="0.1.2"; sha256="1gbv2b86nznw5bs05c4ns96b8hsxkhikhcf8syl2qbbafzy8vx6y"; depends=[dplyr ggplot2 magrittr scales]; }; ggnuplot = derive2 { name="ggnuplot"; version="0.1.0"; sha256="0i09ybmxdjyr15z1a651k3bkbqskri4ipcyjap93020zbfv05r9c"; depends=[ggplot2]; }; ggokabeito = derive2 { name="ggokabeito"; version="0.1.0"; sha256="07lbzq87zl2yswidp0f90l8szl7y4wwn8psgacyl90wn2gd9mdcp"; depends=[ggplot2]; }; @@ -10212,11 +10345,12 @@ in with self; { ggpattern = derive2 { name="ggpattern"; version="1.0.1"; sha256="1b9bfxlg64gr39bz58fp6jmg4nziwk8rk94rzpjsqhfhpwi2lrgr"; depends=[ggplot2 glue gridpattern rlang scales]; }; ggpcp = derive2 { name="ggpcp"; version="0.2.0"; sha256="1xkxsxnxcyy8rrazzbl38g405cxjjjz6a720cdm4bsk03q2q4rar"; depends=[assertthat dplyr ggplot2 rlang tibble tidyr tidyselect]; }; ggperiodic = derive2 { name="ggperiodic"; version="1.0.3"; sha256="03gsbdqqxi0j4slp61bzrn4m2sjhh9fvcy1a1h5vcg4ax233j270"; depends=[data_table dplyr ggplot2 sticky tidyselect]; }; - ggpicrust2 = derive2 { name="ggpicrust2"; version="1.5.0"; sha256="0z8mmvpgrhhpkya0xzf3n5i3w9138i18hlxng5xsgxr0yfwb6sy3"; depends=[ALDEx2 aplot DESeq2 dplyr edgeR GGally ggplot2 ggprism lefser limma Maaslin2 metagenomeSeq MicrobiomeStat phyloseq readr SummarizedExperiment tibble tidyr]; }; + ggpicrust2 = derive2 { name="ggpicrust2"; version="1.6.5"; sha256="02ais1y3z85vykxd9975gz33s80d1nhivly6a07y98dbmlzjyr6a"; depends=[ALDEx2 aplot DESeq2 dplyr edgeR GGally ggplot2 ggprism lefser limma Maaslin2 metagenomeSeq MicrobiomeStat patchwork phyloseq readr SummarizedExperiment tibble tidyr]; }; ggpie = derive2 { name="ggpie"; version="0.2.5"; sha256="11c431ggrhyxiql1v9qajp568jri6hlp1kgl334j4f7sgyh73ng5"; depends=[dplyr ggnewscale ggplot2 ggrepel magrittr RColorBrewer rlang scales stringr tibble]; }; ggplate = derive2 { name="ggplate"; version="0.0.1"; sha256="0jn23hmh68hfz1i2h4vz80avzdrn05w6c9ifxfj8jhgh7dj974hf"; depends=[dplyr farver forcats ggplot2 purrr rlang scales stringr tidyr]; }; ggplot_multistats = derive2 { name="ggplot.multistats"; version="1.0.0"; sha256="1afzfa86vc484bcwpg7m1ky03jpax584rigzgai8w06pifkmz0il"; depends=[ggplot2 hexbin rlang scales]; }; ggplot2 = derive2 { name="ggplot2"; version="3.4.2"; sha256="1jl3a9z668zjb2p2c01rxpgmjs5gc9gkxn8xqi7q8vrc1akhl8vh"; depends=[cli glue gtable isoband lifecycle MASS mgcv rlang scales tibble vctrs withr]; }; + ggplot2_utils = derive2 { name="ggplot2.utils"; version="0.2.1"; sha256="0p1074cqfb1gw6wrrwzfxsibgm0496k44rgcdd1198g8f0cizyl5"; depends=[EnvStats GGally ggplot2 ggpp]; }; ggplot2movies = derive2 { name="ggplot2movies"; version="0.0.1"; sha256="067ld6djxcpbliv70r2c1pp4z50rvwmn1xbvxfcqdi9s3k9a2v8q"; depends=[]; }; ggplotAssist = derive2 { name="ggplotAssist"; version="0.1.3"; sha256="1g0s1dkbrxmwqjqppagdbnx24s0nbjn09xwxix3dkfssz6drhala"; depends=[dplyr editData gcookbook ggplot2 ggthemes magrittr miniUI moonBook rstudioapi scales shiny shinyAce shinyWidgets stringr tibble tidyverse]; }; ggplotgui = derive2 { name="ggplotgui"; version="1.0.0"; sha256="1yfglg5438mwyml845isimzma5q6824x19jka509ng49bzmf1za0"; depends=[ggplot2 haven plotly RColorBrewer readr readxl shiny stringr]; }; @@ -10234,16 +10368,18 @@ in with self; { ggpval = derive2 { name="ggpval"; version="0.2.5"; sha256="09wjfkmsh165xiw1dab6c8qb9wrnzm1q1sbfnbzyg99wsk480bgy"; depends=[data_table ggplot2]; }; ggquickeda = derive2 { name="ggquickeda"; version="0.3.0"; sha256="0kqsyfmfsgqlca3p4f64sd5d7v7yzz02qvba31z5lj0sr267npmx"; depends=[colourpicker dplyr DT Formula GGally ggbeeswarm ggplot2 ggpmisc ggpubr ggrepel gridExtra Hmisc markdown plotly quantreg rlang RPostgres scales shiny shinyFiles shinyjqui shinyjs stringr survival survminer table1 tidyr zoo]; }; ggquiver = derive2 { name="ggquiver"; version="0.3.2"; sha256="1nzqfm9byr0bmj0l6fdf8afymbhc6qjq5iff3wnng7gqqaa9s6dc"; depends=[ggplot2]; }; + ggragged = derive2 { name="ggragged"; version="0.1.0"; sha256="17hpzqslns2y7kpfjpw9lnwzilzshlkbhy69k0ql8k6xs2zaxn9m"; depends=[ggplot2 gtable rlang vctrs]; }; ggrain = derive2 { name="ggrain"; version="0.0.3"; sha256="129b9ypny134w0qqi9d86bx3x588136lxscasqdbcpda1l2nj6ni"; depends=[cli gghalves ggplot2 ggpp rlang vctrs]; }; ggraph = derive2 { name="ggraph"; version="2.1.0"; sha256="07sw4h94dzbs44dcvvj80g8v8252k4iw8pkmzdrk4qagvhidnvv8"; depends=[cli digest dplyr ggforce ggplot2 ggrepel graphlayouts gtable igraph lifecycle MASS Rcpp rlang scales tidygraph vctrs viridis withr]; }; ggraptR = derive2 { name="ggraptR"; version="1.3"; sha256="1i6jp0n1sz5b4sv3d4h5624zhlknih2qp6p2m2ri6s3gsh1pl9zz"; depends=[dplyr ggplot2 pacman purrr shiny]; }; ggrasp = derive2 { name="ggrasp"; version="1.2"; sha256="0jl4bmhsisqc7nam8r027lr1qp0yr6bvdiyycknp7bkl65cg2x1z"; depends=[ape bgmm colorspace ggplot2 mixtools]; }; ggrastr = derive2 { name="ggrastr"; version="1.0.1"; sha256="07sx5wlawfyb0zy5am2q1ajhkdym5r9ih47p57l8bv4dlc7ykml2"; depends=[Cairo ggbeeswarm ggplot2 png ragg]; }; - ggrcs = derive2 { name="ggrcs"; version="0.2.8"; sha256="0bckgg9m6gfh4y45mqw3i83i9ba53mvvkbjf2qqnd474axd5f7qx"; depends=[ggplot2 rms scales]; }; + ggrcs = derive2 { name="ggrcs"; version="0.3.0"; sha256="1j4pqcsacsnca6aj20kppparzff4wrbfs55vq66igmhcd43ry3rd"; depends=[ggplot2 rms scales]; }; ggredist = derive2 { name="ggredist"; version="0.0.2"; sha256="1p5bzqi4g5ri0m0nlwra6vps4sil7qc56cd8nzp0xh7k1gl598ig"; depends=[ggplot2 scales]; }; ggrepel = derive2 { name="ggrepel"; version="0.9.3"; sha256="0p00kb1x3q0krk5g8mmwqknnjlsznqs4i7mlfq1dp17fxpia1sxr"; depends=[ggplot2 Rcpp rlang scales withr]; }; ggridges = derive2 { name="ggridges"; version="0.5.4"; sha256="0lfqx21g09s3fp74mld47qfx1nnav18xqj37griyqk406hh1rxrb"; depends=[ggplot2 scales withr]; }; ggrisk = derive2 { name="ggrisk"; version="1.3"; sha256="02df3gcviax747d33v30m97jsazj7zdpjnhypfy38cg70yxidwg9"; depends=[cutoff do egg ggplot2 nomogramFormula reshape2 rms set survival]; }; + ggrounded = derive2 { name="ggrounded"; version="0.0.3"; sha256="124khfv4fl3xgylq4s1pc3wzld0n68iclyl0pm19jcw97bmf1cxl"; depends=[ggplot2 gridGeometry]; }; ggroups = derive2 { name="ggroups"; version="2.1.2"; sha256="0fb6awfm4vn67pgmz50fljvp9mfxx1q29pirgv04dya8751srxgi"; depends=[]; }; ggsci = derive2 { name="ggsci"; version="3.0.0"; sha256="0ag1cj4ycl5xmll8mqmmikyvq94l8yx96pb8m2i853yp2rjk20c9"; depends=[ggplot2 scales]; }; ggseas = derive2 { name="ggseas"; version="0.5.4"; sha256="1jpdijwll5l7bg7cmjnklkxffysi9ckzg50rw2a2cd00zwby11q9"; depends=[ggplot2 rlang seasonal zoo]; }; @@ -10259,24 +10395,24 @@ in with self; { ggsoccer = derive2 { name="ggsoccer"; version="0.1.7"; sha256="13icxd9w3dfwpjl4yaw0gp09mviwf7xrrfs30z66nga459h6gf1d"; depends=[ggplot2 rlang]; }; ggsolvencyii = derive2 { name="ggsolvencyii"; version="0.1.2"; sha256="0jzj4iglgzwp6pfs5zr7mirdiqrrmbwdvl245b1fwf42rnxbqrq6"; depends=[dplyr ggplot2 magrittr tidyr]; }; ggsom = derive2 { name="ggsom"; version="0.4.0"; sha256="0qsih00rm3ng2zh6p2s7a35rh1qlvbkn82s53v765w60fjmhwkwf"; depends=[assertthat data_table dplyr entropy ggplot2 kohonen magrittr tibble tidyr]; }; - ggspatial = derive2 { name="ggspatial"; version="1.1.7"; sha256="15v7g2ywxvy64ixl55j58qfzi41c7ykkh2ind4npf7n76q4ixpc3"; depends=[abind ggplot2 glue rlang rosm scales sf tibble tidyr]; }; + ggspatial = derive2 { name="ggspatial"; version="1.1.8"; sha256="0nx5g4n9iqi8pqxq30ydmcyvmgwynn6zciffydg1p879035832vz"; depends=[abind ggplot2 glue rlang rosm scales sf tibble tidyr]; }; ggspectra = derive2 { name="ggspectra"; version="0.3.11"; sha256="19mmjcifafb6xfn33q2i1aghqy6axc35g6942759j49izd7wm8lz"; depends=[ggplot2 ggrepel lubridate photobiology photobiologyWavebands rlang scales tibble]; }; ggstance = derive2 { name="ggstance"; version="0.3.6"; sha256="0wk3gbi5365sndi02gwd4c33vcrj5p8cfwakwjg010y5hgxx96nd"; depends=[cli ggplot2 plyr rlang withr]; }; ggstar = derive2 { name="ggstar"; version="1.0.4"; sha256="0m2knp1jf1x62nqd8ln4haw90jv69l7vjrhn4pdrywgmwhdrp8gd"; depends=[cli ggplot2 gridExtra scales]; }; - ggstats = derive2 { name="ggstats"; version="0.2.1"; sha256="04g1f3kpm9agqq3303i3lhx7nndmvgmgab6qdbax4rmrwjxqr9kh"; depends=[broom_helpers cli dplyr forcats ggplot2 lifecycle magrittr rlang scales tidyr]; }; - ggstatsplot = derive2 { name="ggstatsplot"; version="0.11.0"; sha256="1gzm8bki6nzwjcqk5zzc2jcrx41wby919w5377r6hhga1dcx3r4v"; depends=[correlation datawizard dplyr ggplot2 ggrepel ggsignif glue insight paletteer parameters patchwork performance purrr rlang statsExpressions tidyr]; }; + ggstats = derive2 { name="ggstats"; version="0.3.0"; sha256="0kcsiq1l570j7wwkdrd7zxswlkcxdjwnscj8b6crjzdy40f3v4xk"; depends=[broom_helpers cli dplyr forcats ggplot2 lifecycle magrittr rlang scales tidyr]; }; + ggstatsplot = derive2 { name="ggstatsplot"; version="0.11.1"; sha256="0pfgjlszr9d3sqkgfkw4569zk72km4fw9rrz8bylf685735imfkw"; depends=[correlation datawizard dplyr ggplot2 ggrepel ggsignif glue insight paletteer parameters patchwork performance purrr rlang statsExpressions tidyr]; }; ggstream = derive2 { name="ggstream"; version="0.1.0"; sha256="0d6g5916mfrg2srcqjhlpm4acp4g16vq9ks4x37yzkpr34vi5x7j"; depends=[dplyr forcats ggplot2 magrittr purrr tidyr]; }; ggstudent = derive2 { name="ggstudent"; version="0.1.1-1"; sha256="0qs27b4lksaaaspavkycbzf8cfjxjli7xrfjby71sl0lca3fwm1g"; depends=[dplyr ggplot2]; }; ggsurvey = derive2 { name="ggsurvey"; version="1.0.0"; sha256="1a50ac2546pxa35k59j4ih0csiyfjdgqfqwm3fb5ny7jx1mk0hmi"; depends=[dplyr ggplot2 hexbin survey]; }; ggsurvfit = derive2 { name="ggsurvfit"; version="0.3.0"; sha256="009fi4viiyscxsv26sy169qlmwp4nh2c21alw9nnkmlnwngs770w"; depends=[broom cli dplyr ggplot2 glue gtable patchwork rlang survival tidyr]; }; ggswissmaps = derive2 { name="ggswissmaps"; version="0.1.1"; sha256="0is48x6k2p5dgj9q4km0dv33a9pcpfhlai9vz295y3acpyrkmnn4"; depends=[ggplot2]; }; ggtea = derive2 { name="ggtea"; version="0.1.1"; sha256="04g8g17ziw13rxjzkvgy5yd0z15ypxk0b8fq2y1vk8acsqr2dv11"; depends=[ggplot2]; }; - ggtern = derive2 { name="ggtern"; version="3.4.1"; sha256="0w0kg6755kfpczqpaly251fgqv31js9gdzr17x734l2adycji3yr"; depends=[compositions ggplot2 gridExtra gtable hexbin latex2exp lattice MASS plyr proto scales]; }; ggtext = derive2 { name="ggtext"; version="0.1.2"; sha256="10vrrxviv4yp9lqsanqvwsvbj64vn66hwm1w7860x1g58hf1g0l7"; depends=[ggplot2 gridtext rlang scales]; }; ggthemes = derive2 { name="ggthemes"; version="4.2.4"; sha256="0rw5f6axyz1pqn6qx9jwm38hjzn8bqs1nfjkvm96z3xnyn61cdbv"; depends=[ggplot2 purrr scales stringr tibble]; }; ggtikz = derive2 { name="ggtikz"; version="0.1.2"; sha256="00l91sw6h8h7wvzj6nn30q7rniw8kb0pxrvy4xah5bhb44iz7gmk"; depends=[dplyr ggplot2 stringr tikzDevice]; }; ggtrace = derive2 { name="ggtrace"; version="0.2.0"; sha256="1zzdamzxkwimzjhrjf5nijj0r94l03nabny5gjv49kqlncjicr7r"; depends=[ggplot2 rlang]; }; ggtrendline = derive2 { name="ggtrendline"; version="1.0.3"; sha256="10ml5mdijh27b1js67zwaywn81bvz6aja1bn60k3rnr964nsljsj"; depends=[ggplot2]; }; + ggtricks = derive2 { name="ggtricks"; version="0.1.0"; sha256="1bpf3a5da8csqzwyqw0xqkbki4jgyhsybj2lw8zs00vcdsg9bhhv"; depends=[cli ggplot2]; }; ggupset = derive2 { name="ggupset"; version="0.3.0"; sha256="079a1fghhbxhkx42ac0n5chmh07i60m2pkdk76frqbbmwrw7inx4"; depends=[ggplot2 gtable rlang scales tibble]; }; ggvenn = derive2 { name="ggvenn"; version="0.1.10"; sha256="0gl7z8hrn2wmmb59fvfv2hsw40p629aj086dv0kwlv162zqidqfd"; depends=[dplyr ggplot2]; }; ggversa = derive2 { name="ggversa"; version="0.0.1"; sha256="0xqn8iznrm8q30pxwka88wi1z7lndi6lm12rq6ngcaxf294fbz01"; depends=[]; }; @@ -10292,10 +10428,11 @@ in with self; { ghql = derive2 { name="ghql"; version="0.1.0"; sha256="19awg98r2hwwwwrwh0166y8ij1clf58vrf02i8fhhfzddx3an6bz"; depends=[crul graphql jsonlite R6]; }; ghyp = derive2 { name="ghyp"; version="1.6.3"; sha256="0jc4rrw0ny0x15im2r9kyrlg9qdnljnbpg5pq4avy997nfdgyhav"; depends=[MASS numDeriv]; }; ghypernet = derive2 { name="ghypernet"; version="1.1.0"; sha256="0k4w37vnhpanpa80la8rscgimnnzzid5v59109xfbbz1xxx1bb49"; depends=[dplyr extraDistr numbers pbmcapply plyr purrr reshape2 rlang rootSolve texreg]; }; + gibasa = derive2 { name="gibasa"; version="0.9.3"; sha256="0ckzzb58jih3shq5f4xa9c41cgywvxv1v4hph8zyq0hfwxn6q5km"; depends=[audubon dplyr Matrix purrr Rcpp RcppParallel rlang stringi]; }; gibble = derive2 { name="gibble"; version="0.4.0"; sha256="19il4si7ch5jr7plr8qwv7jrc5kfkxmh5jrcdvbn688gxcnv7bs0"; depends=[dplyr rlang tibble]; }; giedata = derive2 { name="giedata"; version="0.1.1"; sha256="19sr8phsay7bpqrbh776ms0aw9xgiv0x9knmn88ydzpkcdcd1z9j"; depends=[curl dplyr httr lubridate magrittr purrr]; }; gif = derive2 { name="gif"; version="0.1.0"; sha256="119d7q9xs6xpncv1r2w008kld9z07ckyj1kja9b8n2lnlb8532pk"; depends=[MASS Matrix Rcpp RcppEigen]; }; - gifski = derive2 { name="gifski"; version="1.6.6-1"; sha256="1qfhg19iclsdyb583sf25fh7am951c7q53z1s64r3vv1ivdnn18k"; depends=[]; }; + gifski = derive2 { name="gifski"; version="1.12.0"; sha256="05k4vkckrhrwif39bb8v0a0mzb491plfzzfvmj8q2kfipcq16x7q"; depends=[]; }; gifti = derive2 { name="gifti"; version="0.8.0"; sha256="1gb3x4rln9vayjd9fgzb434mm3dwcqgrvlv6rmh4b39mjfm73sly"; depends=[base64enc R_utils xml2]; }; giftwrap = derive2 { name="giftwrap"; version="0.0.4"; sha256="1zsw529h69x9yaq2csfws4iqn3mm39z34kwzj0b2y850wzbn2dvp"; depends=[namespace processx readr tibble]; }; gigg = derive2 { name="gigg"; version="0.2.1"; sha256="0qb8w455a8wxc5ljmydq4xag2kbj5yk06an0pd9hd4k48wssg8la"; depends=[BH Rcpp RcppArmadillo]; }; @@ -10304,16 +10441,15 @@ in with self; { gimmeTools = derive2 { name="gimmeTools"; version="0.1"; sha256="1g170rz3c3qx27yy67f7xab4gkm0pbbvwlwkcsczfxphad609ryl"; depends=[easycsv magrittr miniUI rhandsontable rintrojs rstudioapi shiny shinyjs shinyWidgets]; }; gimms = derive2 { name="gimms"; version="1.2.1"; sha256="1ykc8ji8cyrz5vg9if7lzx5iqm5wvabcyaigfvh014w82i12pfg8"; depends=[curl Kendall ncdf4 raster zyp]; }; gips = derive2 { name="gips"; version="1.0.0"; sha256="1cnkcap7g2b3pspc8bvyr1nbyxpfggy5rxpx58q6vmjz3pxqdxrp"; depends=[numbers permutations rlang]; }; - giscoR = derive2 { name="giscoR"; version="0.3.3"; sha256="00c84j6smdj1c4d8asfa7ammfjyq7xsbd5v1xla77lqpizsi5lfp"; depends=[countrycode geojsonsf rappdirs sf]; }; + giscoR = derive2 { name="giscoR"; version="0.3.4"; sha256="0sv67kvsaf3y0p15kr81i4lpnjr260lf032izr7qvfmxmaixf4i4"; depends=[countrycode geojsonsf rappdirs sf]; }; gistr = derive2 { name="gistr"; version="0.9.0"; sha256="0ac9ikrdg6i8xvlma0gizvsdva46408lk7hvsgkqirhy2ljy02hp"; depends=[assertthat crul dplyr httr jsonlite knitr magrittr rmarkdown]; }; - git2r = derive2 { name="git2r"; version="0.31.0"; sha256="0vfn7kkkarha63vv3k8hi9y5snfsdpwdrbmych560126z9w95nzi"; depends=[]; }; + git2r = derive2 { name="git2r"; version="0.32.0"; sha256="0wa6k1g7y0sx6s7map7mn579c1h07n185m163msmcjk81i62ap8v"; depends=[]; }; git2rdata = derive2 { name="git2rdata"; version="0.4.0"; sha256="05hr4ks2rdnjhbd5v865r9h6gnw149n5h6nwilw5xfx00gj86b9d"; depends=[assertthat git2r yaml]; }; git4r = derive2 { name="git4r"; version="0.1.2"; sha256="1kfx95y0kp656y8306jz75q4zmd8dswfmrb5jr0wihlhnz182g2h"; depends=[diffr git2r]; }; gitGPT = derive2 { name="gitGPT"; version="0.1.3"; sha256="1jznhl0ljcang10s4k9338fy5qsp0pxg4kv482v93milszib3vy7"; depends=[httr jsonlite]; }; gitcreds = derive2 { name="gitcreds"; version="0.1.2"; sha256="0pf70g4a2kxjcid5rc4ppmgcl3kpjhkszdgz4fqn4l33lp6apij1"; depends=[]; }; gitdown = derive2 { name="gitdown"; version="0.1.6"; sha256="16g4kngal0w0vjrympxmnq16rpxks4wbj35aasvr3p2srgqn86by"; depends=[attempt bookdown dplyr git2r knitr magrittr purrr rmarkdown stringi tidyr]; }; gitear = derive2 { name="gitear"; version="1.0.0"; sha256="139h19yyi7bpkps2vskdnga43ggpgb9fg8jdr7n8vgadxjamv98p"; depends=[dplyr httr jsonlite magrittr mockery Rcpp stringr tibble tidyr]; }; - gitgadget = derive2 { name="gitgadget"; version="0.7.6"; sha256="0x30asifnyrvsp0wqrc5xwszsbzrwys9m98b01sfkv8kbg2z45am"; depends=[callr curl dplyr jsonlite markdown miniUI rstudioapi shiny shinyFiles usethis]; }; githubinstall = derive2 { name="githubinstall"; version="0.2.2"; sha256="0hqh86r2007hzdbm8rr0fwqhhsna7ji8sdgmdnrxkxraa5f2pfz3"; depends=[curl data_table devtools httr jsonlite mockery]; }; gitignore = derive2 { name="gitignore"; version="0.1.5"; sha256="1jph54ah4ajb5xakbpnbmp44ddqz5np7c60441vhfn7nxa5b9cpx"; depends=[clipr clisymbols crayon curl glue here jsonlite purrr xfun]; }; gitlabr = derive2 { name="gitlabr"; version="2.0.1"; sha256="0h3md21ir0nw9n17y6sg8y7l4z2lk5f5bvz4q6v3cs7jn734imwb"; depends=[arpr base64enc dplyr httr magrittr purrr shiny stringr tibble]; }; @@ -10332,7 +10468,7 @@ in with self; { glasso = derive2 { name="glasso"; version="1.11"; sha256="02p3612rpydk195n2qr77lp1j2w8zsw1ckkk98c8angm4r5q8dsc"; depends=[]; }; glassoFast = derive2 { name="glassoFast"; version="1.0"; sha256="1sgmh4l06q7mrmgnimphpqgix4k4jzaj2l30kpmnf92caa2v7ngw"; depends=[]; }; glba = derive2 { name="glba"; version="0.2.1"; sha256="0dilf144xfn454xfsndbddhc28gzf36fiknc2qwcx3bp7z5caqjn"; depends=[]; }; - glca = derive2 { name="glca"; version="1.3.3"; sha256="1fgbwgn2v7l7ikwl88fkzvikhzb5hgwlawly50rml5w8jcfm0nkz"; depends=[MASS Rcpp]; }; + glca = derive2 { name="glca"; version="1.4.0"; sha256="13dzv5d7i3nq3866wcx4gccxacbqsshb2nriqsnsgbdrgpwk88h9"; depends=[MASS Rcpp]; }; glcm = derive2 { name="glcm"; version="1.6.5"; sha256="13my6y9jqd86cg5n74p4b8mqbdgwnanxx4qf1rrhm5jxf6sa31qm"; depends=[raster Rcpp RcppArmadillo]; }; gld = derive2 { name="gld"; version="2.6.6"; sha256="1i7xpyxd7r1fkjy9zkzd3rfsnb35v5c5fkafs1zd9d8729wfj8za"; depends=[e1071 lmom]; }; gldrm = derive2 { name="gldrm"; version="1.5"; sha256="1mbdxqjw6sa47kigwrjq1gn6vi36zhg9j2lck144iwa10ms0y9xp"; depends=[]; }; @@ -10350,7 +10486,7 @@ in with self; { glmglrt = derive2 { name="glmglrt"; version="0.2.2"; sha256="1954ywshnqzr7h77wshf63y3zx3ra8mrfabg5dqjhkgv4rsk3h1y"; depends=[MASS parameters]; }; glmlep = derive2 { name="glmlep"; version="0.2"; sha256="0rq2vxbr732r725pn8qdvppxcrhjhyvlr550svfgy1inq985c1w4"; depends=[]; }; glmm = derive2 { name="glmm"; version="1.4.4"; sha256="0v8iill3503piyx3wjxd602hs6hgz9818ipqlvg34963hh4b4ixi"; depends=[doParallel foreach itertools Matrix mvtnorm trust]; }; - glmm_hp = derive2 { name="glmm.hp"; version="0.0-7"; sha256="0sjk3rilsyah99p4d6lp7lr43flwan2z2ykng9ab0wf7m61wqxlm"; depends=[ggplot2 lme4 MuMIn]; }; + glmm_hp = derive2 { name="glmm.hp"; version="0.1-0"; sha256="1zs2aibvb4pykm80pi0rxbdf5qm05l8xhdz20rmx52101837lzjj"; depends=[ggplot2 lme4 MuMIn vegan]; }; glmmEP = derive2 { name="glmmEP"; version="1.0-3.1"; sha256="0fql85m0mxn58jh3mgrcw56bb4dx7amrz39ngqrljwi5pv5i7aj4"; depends=[lme4 matrixcalc]; }; glmmLasso = derive2 { name="glmmLasso"; version="1.6.2"; sha256="13vh35ks4r1gpg8b7l29wj27drf2bwm8nmrnxqqad2n6sparhbdq"; depends=[GMMBoost Matrix minqa Rcpp RcppEigen]; }; glmmML = derive2 { name="glmmML"; version="1.1.4"; sha256="0xs6vn245y32pshlslblrj6517dwwmk0ffp2rzji8d8h0lsxidxx"; depends=[]; }; @@ -10358,18 +10494,17 @@ in with self; { glmmSeq = derive2 { name="glmmSeq"; version="0.5.5"; sha256="182pgwqqbgpkcvapkps7ahxa4ppic44j10081q0v9lp2cjdiv4qy"; depends=[car ggplot2 ggpubr glmmTMB lme4 lmerTest MASS pbapply pbmcapply plotly qvalue]; }; glmmTMB = derive2 { name="glmmTMB"; version="1.1.7"; sha256="1wf1fn2gf500y2r4d84p5gj3b1fj2cmyw2lp366r4nm6p3iyd2x3"; depends=[lme4 Matrix nlme numDeriv RcppEigen TMB]; }; glmmfields = derive2 { name="glmmfields"; version="0.1.7"; sha256="1pplks32zww2cqxiraxwlbi7772d0l53w5hrz7s9fkm8yl9nbn29"; depends=[assertthat BH broom broom_mixed cluster dplyr forcats ggplot2 loo mvtnorm nlme Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders tibble]; }; - glmmrBase = derive2 { name="glmmrBase"; version="0.2.5"; sha256="0l755m30zf264hkfyqhd4h8f9zsw2h1bmbvkmbwljfzwlrha2dc0"; depends=[digest Matrix R6 Rcpp RcppEigen]; }; - glmmrOptim = derive2 { name="glmmrOptim"; version="0.2.3"; sha256="1w14s27zh51q73d2zzhpqjkx47i5rjdn1x9c26i4gj6d1ma288fl"; depends=[digest glmmrBase Matrix Rcpp RcppEigen]; }; + glmmrBase = derive2 { name="glmmrBase"; version="0.3.1"; sha256="0rmarx86cgddjly9n51z4dif4d2mprq3ygz48pfxx58aypnd99gf"; depends=[BH digest Matrix R6 Rcpp RcppEigen RcppParallel rminqa SparseChol]; }; + glmmrOptim = derive2 { name="glmmrOptim"; version="0.2.4"; sha256="1jrrv9rfq90d9ahhqdj2f1zkzwmwzp2f0d3wf9cmlw0aams70w6i"; depends=[digest glmmrBase Matrix Rcpp RcppEigen]; }; glmnet = derive2 { name="glmnet"; version="4.1-7"; sha256="1a7af2658z9fmx0rcdx401lj86q73qkvsvlfnrp2bw4xv43bd85k"; depends=[foreach Matrix Rcpp RcppEigen shape survival]; }; glmnetSE = derive2 { name="glmnetSE"; version="0.0.1"; sha256="0qj3c8qrx3vl0dr9prravfjwzqv1yfi771xfss9d44wlvjz5f4gp"; depends=[boot glmnet]; }; glmnetUtils = derive2 { name="glmnetUtils"; version="1.1.8"; sha256="1k8ivzjgpkm2a948qxx3wmkhlppbk31qc76spv2pscmp24x0lxyn"; depends=[glmnet Matrix]; }; glmnetcr = derive2 { name="glmnetcr"; version="1.0.6"; sha256="0cs0yj2js0920iggcw2vci5y9hnsm3hd7wpd7mwnx8mszwrklawg"; depends=[glmnet]; }; - glmnetr = derive2 { name="glmnetr"; version="0.1-2"; sha256="1m3xlzcv60l6wb7d6xbk60sdg3npq1ly7i7i9j45ndj28yb6yr6k"; depends=[glmnet Matrix rpart survival]; }; glmpath = derive2 { name="glmpath"; version="0.98"; sha256="1jbiqqd1s93i941dhyyx50zlgwavhyjfw8bx13z4gz05rdvi4gn8"; depends=[survival]; }; glmpathcr = derive2 { name="glmpathcr"; version="1.0.8"; sha256="00hbgp1kdbvihqvx03vv6gq32whrkcfq3n32bbj3cda85dnivlwq"; depends=[glmpath]; }; glmpca = derive2 { name="glmpca"; version="0.2.0"; sha256="02xjf0gg52925hw9nw2j0znfmzfzfwbv0fxjl9d2fy9j63drr2h4"; depends=[MASS]; }; glmtlp = derive2 { name="glmtlp"; version="2.0.1"; sha256="0ax3jhbib75gzp5a2y4nj80qss4qmn65rra8bsnkmwgcn4qg8xja"; depends=[doParallel foreach ggplot2]; }; - glmtoolbox = derive2 { name="glmtoolbox"; version="0.1.6"; sha256="0bg1d7whdihjsm6rzq40a36dlg2v3asav9g2955i3w57kp0f8wwa"; depends=[Formula numDeriv Rfast]; }; + glmtoolbox = derive2 { name="glmtoolbox"; version="0.1.7"; sha256="130mb2ylm8jy3212jbli4w87mx141jq2x223mysavrarjmmibxk1"; depends=[Formula MASS numDeriv Rfast statmod]; }; glmtrans = derive2 { name="glmtrans"; version="2.0.0"; sha256="10d9z1rrjnxkw3nmim01ql5yfn1w62sncgclmprznr5kbna49yj3"; depends=[assertthat caret doParallel foreach formatR ggplot2 glmnet]; }; glmtree = derive2 { name="glmtree"; version="0.2"; sha256="07b7ma38r5cjv6c33q1n2f8xvzn3lj004i8v947pqdhg3fi9wlc6"; depends=[caret dplyr magrittr partykit]; }; glmulti = derive2 { name="glmulti"; version="1.0.8"; sha256="0zviahj99645s1xs2f9z7rnv95x4rdz7mfwzy3qjfw46yqpfj5cn"; depends=[leaps rJava]; }; @@ -10393,6 +10528,7 @@ in with self; { glycanr = derive2 { name="glycanr"; version="0.4.0"; sha256="1ic2v2dim0a8kzl38vx8an80jrbzimng0plrx62a1ps1jnczihl9"; depends=[coin dplyr ggplot2 tidyr]; }; gm = derive2 { name="gm"; version="1.0.2"; sha256="1g0frcfk2ybhhz0sixdmj8h3z61acaxs10ybja60q91mxlyix2zx"; depends=[base64enc glue htmltools knitr magick magrittr MASS rlang rstudioapi stringr]; }; gmDatabase = derive2 { name="gmDatabase"; version="0.5.0"; sha256="0prap4a8pvylmvakd2ii87jz9bqf0vvfsxdi4iwa40nx444hqhx2"; depends=[DBI digest foreach RMySQL shiny]; }; + gmGeostats = derive2 { name="gmGeostats"; version="0.11.3"; sha256="19kf409yhq13689akqz88dj0fq02falbh0j0kkvh0l0vymx4hj7y"; depends=[boot compositions foreach gstat RColorBrewer sp]; }; gma = derive2 { name="gma"; version="1.0"; sha256="08hxbs9z4vq5zjis0lgdcvlysaj1k7i0icdk3wsyqf3wd9znsibi"; depends=[car MASS nlme]; }; gmailr = derive2 { name="gmailr"; version="1.0.1"; sha256="1cfirp7a5jg9mprzj55ppyag4l527l8czrq4a1cxc8qrm8kpzx0b"; depends=[base64enc crayon gargle httr jsonlite lifecycle magrittr mime rematch2]; }; gmapsdistance = derive2 { name="gmapsdistance"; version="4.0.0"; sha256="1qi9xsm0izkgj1lfg353lsg4hl0gz0jadkygrbyimpiqcfl9w6jg"; depends=[RCurl XML]; }; @@ -10401,7 +10537,7 @@ in with self; { gmfd = derive2 { name="gmfd"; version="1.0.1"; sha256="03sag09x7pjyzsp6w1z06108ig068krmw75064cnl3pqfvfyjfgr"; depends=[]; }; gmgm = derive2 { name="gmgm"; version="1.1.2"; sha256="18q119v8wi4l5i8r6qdsdwih3jj71iidwgbjjvqp2bh37wp58wq3"; depends=[dplyr ggplot2 purrr rlang stringr tidyr visNetwork]; }; gmm = derive2 { name="gmm"; version="1.7"; sha256="12lg2j67z7s75fk9l8npiv8g8mz4rhvhrq7lc2d49jj4wsipah0r"; depends=[sandwich]; }; - gmmsslm = derive2 { name="gmmsslm"; version="1.1.2"; sha256="116az9mm5ssz4zlgzf6a48jlwv9jbq4jfxpc2i2wbhnrr0iim0wd"; depends=[mvtnorm]; }; + gmmsslm = derive2 { name="gmmsslm"; version="1.1.4"; sha256="1zhrcfs68r58qn0xkvvb3bnwavycy957v32pw0mh87pi5yw9n3iy"; depends=[mvtnorm]; }; gmnl = derive2 { name="gmnl"; version="1.1-3.2"; sha256="01pviab3gyvjdlv5jy7wzp33909znhpn47kar55bwkm6gm3bdlg8"; depends=[Formula maxLik mlogit msm plotrix truncnorm]; }; gmodels = derive2 { name="gmodels"; version="2.18.1.1"; sha256="158y7yh4maawn9vki8cq4sil48xib2bbpl6qgj5gvlkw3c14hzfs"; depends=[gdata MASS]; }; gmp = derive2 { name="gmp"; version="0.7-1"; sha256="1djxhc4v874asmrj8qy054779wsq499f5f2wc6vmr40qab33v1x6"; depends=[]; }; @@ -10421,7 +10557,7 @@ in with self; { gnumeric = derive2 { name="gnumeric"; version="0.7-8"; sha256="0iwl00mzsg8h8q67bjp6485idjlmj24362b1rbmkifckss8hrc98"; depends=[XML]; }; go2bigq = derive2 { name="go2bigq"; version="1.0"; sha256="007sk6i10phxfmrgn03pa43ixfp1v27nxyvgmhzwrj5l9b532f0d"; depends=[gmp Rmpfr]; }; goalp = derive2 { name="goalp"; version="0.3.1"; sha256="1xr9bgizzsjr4nn41q1zi049wg9cw6qril60bri96x0xgc00qdpz"; depends=[lpSolve]; }; - goeveg = derive2 { name="goeveg"; version="0.5.1"; sha256="1dg0aw3sfar706jyiy5m5qz3nzs6sy3ljs9jp0p65b0v01rw8sbs"; depends=[fields Hmisc mgcv vegan]; }; + goeveg = derive2 { name="goeveg"; version="0.6.4"; sha256="1ifvw7lsc8xk49cap2r0h9kf8wi12vhz3jqw9fycw8qrs8rl7sqw"; depends=[fields Hmisc mgcv vegan]; }; gofCopula = derive2 { name="gofCopula"; version="0.4-1"; sha256="17bdrn8xsqjz64caa5wdigkv798i18gc2f9jiin1bz840bqn1abg"; depends=[copula crayon doSNOW foreach MASS numDeriv progress R_utils SparseGrid VineCopula yarrr]; }; gofar = derive2 { name="gofar"; version="0.1"; sha256="10c1qgmkdhzxk9m2sd0xxww453y9lf5vjsrbmrbzbln91i6svy8j"; depends=[glmnet magrittr MASS Rcpp RcppArmadillo rrpack]; }; gofastr = derive2 { name="gofastr"; version="0.3.0"; sha256="02jn4xbbafl7siwvkqns1818wmw813x9cvqfcnpnmcippiqhrb0b"; depends=[data_table quanteda slam SnowballC tm]; }; @@ -10440,7 +10576,7 @@ in with self; { good = derive2 { name="good"; version="1.0.1"; sha256="0lgp8kpdiaprq78fzny5c344m2s1vb24y9x9m8rkg1kd769h56pv"; depends=[copula maxLik plyr]; }; goodpractice = derive2 { name="goodpractice"; version="1.0.4"; sha256="039ivcb54v58fic8sy445s053yii34nzb170yn3fz6662ik8m8ax"; depends=[clisymbols covr crayon cyclocomp desc jsonlite lintr praise rcmdcheck rstudioapi whoami withr xml2 xmlparsedata]; }; googleAnalyticsR = derive2 { name="googleAnalyticsR"; version="1.1.0"; sha256="0js73jwdsk3bgak61na0sqadjmb74b88rfgi0fxbgafz68xg5rgr"; depends=[assertthat cli dplyr googleAuthR httr jsonlite magrittr measurementProtocol memoise purrr rlang tibble tidyr usethis whisker]; }; - googleAuthR = derive2 { name="googleAuthR"; version="2.0.0"; sha256="1svgjrh4wb3qdavhmks2lmncqrapvw17dvlbk0z1nbny7fplnl5s"; depends=[assertthat cli digest gargle httr jsonlite memoise rlang]; }; + googleAuthR = derive2 { name="googleAuthR"; version="2.0.1"; sha256="0jx1p2yq9mm82bzw1hy75p30rhcmmadkh9qby9s1c5ahq8xsc6cv"; depends=[assertthat cli digest gargle httr jsonlite memoise rlang]; }; googleCloudRunner = derive2 { name="googleCloudRunner"; version="0.5.0"; sha256="14nynl56gc8aj03wxbj243fz80j1wxd93ywfaivy1cgyfi3rid6z"; depends=[assertthat cli curl googleAuthR googleCloudStorageR googlePubsubR httr jose jsonlite openssl plumber usethis withr yaml]; }; googleCloudStorageR = derive2 { name="googleCloudStorageR"; version="0.7.0"; sha256="1yp8h87i17kald9pkr9icxd918n5vywk0h9q8lclip2slx9bry1p"; depends=[assertthat cli curl googleAuthR httr jsonlite openssl yaml zip]; }; googleCloudVisionR = derive2 { name="googleCloudVisionR"; version="0.2.0"; sha256="1n4gkmnwp9wadxz1izggxnpcpm4bz3imhq5y3i2szr8zwafcqqjv"; depends=[data_table glue googleAuthR jsonlite purrr]; }; @@ -10448,7 +10584,6 @@ in with self; { googleErrorReportingR = derive2 { name="googleErrorReportingR"; version="0.0.4"; sha256="0x8pzj43apkk7qkx3fv2a8531lp94ir5l83vj3ksmvzrvqjars3l"; depends=[httr jsonlite magrittr]; }; googleLanguageR = derive2 { name="googleLanguageR"; version="0.3.0"; sha256="0lm50g3gshp18nvygi6is2rayzhcx0rw2rvb4lvm0jlx5m96xgxb"; depends=[assertthat base64enc googleAuthR jsonlite magrittr purrr tibble]; }; googlePolylines = derive2 { name="googlePolylines"; version="0.8.3"; sha256="1r6mwh1wz0966bdbhvy6j0ibz1sa6xgq9k1cn8xpsmrlnr4y4ydv"; depends=[BH Rcpp]; }; - googlePrintr = derive2 { name="googlePrintr"; version="0.0.1"; sha256="19rm78x8qd61ilc6h1kn3dw63m6dfsckqkd3n76krvi0akgl72w5"; depends=[googleAuthR httr jsonlite]; }; googlePublicData = derive2 { name="googlePublicData"; version="0.16.1"; sha256="15hyslpqvncg21q581h061rfyg99y8lavqw1x8hzl7xzd49bn9r5"; depends=[readxl XML]; }; googlePubsubR = derive2 { name="googlePubsubR"; version="0.0.4"; sha256="1f9nd93x2z82jwjw2nha2czcnix7r97h1g3llgfx1b970gsm3pk1"; depends=[cli googleAuthR magrittr]; }; googleTagManageR = derive2 { name="googleTagManageR"; version="0.2.0"; sha256="0ia3ndz5vf3bc5kckyxwn71nngml6p67v8r3n6h79s12xn9jzylg"; depends=[assertthat dplyr future googleAuthR httr jsonlite purrr]; }; @@ -10459,12 +10594,13 @@ in with self; { googlenlp = derive2 { name="googlenlp"; version="0.2.0"; sha256="0d0g18i3im2s5f14k69ym3vwf9a7zkaval3nwrip97xcl6kf4x9h"; depends=[dplyr httr jsonlite purrr readr rlang]; }; googler = derive2 { name="googler"; version="0.0.1"; sha256="1aayji3ncqxl58k29d93dbx05s9rp9bc63fl2cpl1cys7gilblxx"; depends=[jsonlite tibble]; }; googlesheets4 = derive2 { name="googlesheets4"; version="1.1.0"; sha256="1jcfih6f62phj7fdvknkkj46s9cvsnhshvkglg6xif7mpr1mbqah"; depends=[cellranger cli curl gargle glue googledrive httr ids lifecycle magrittr purrr rematch2 rlang tibble vctrs withr]; }; - googletraffic = derive2 { name="googletraffic"; version="0.1.2"; sha256="0zj9lmwxl7d85izswd73p94dmy7ykjkan7j9a82ap7ij593n4fb0"; depends=[ColorNameR dplyr googleway htmlwidgets plotwidgets png raster schemr sf sp stringr webshot2]; }; - googleway = derive2 { name="googleway"; version="2.7.6"; sha256="07jyawybdrfb7rzxba6mqlz98slv6j1bdqv5lqc06zf5x84r0wwd"; depends=[curl googlePolylines htmltools htmlwidgets jpeg jqr jsonlite magrittr scales shiny viridisLite]; }; + googletraffic = derive2 { name="googletraffic"; version="0.1.3"; sha256="08rf7gc3yfs36llc9xdn12p1xngy9h7jd8g4v2ajmrjaddp0h706"; depends=[ColorNameR dplyr googleway htmlwidgets plotwidgets png raster schemr sf sp stringr webshot2]; }; + googleway = derive2 { name="googleway"; version="2.7.7"; sha256="0pcc5ypd5nn5m6xf3p9vdfj2a8f2dxrrqzfq5qm18mlfl9pnvn7x"; depends=[curl googlePolylines htmltools htmlwidgets jpeg jqr jsonlite magrittr scales shiny viridisLite]; }; + gor = derive2 { name="gor"; version="1.0"; sha256="05wjmp8r58jv0ppq54vjw8xbwdlmksh5zch8cjm3ss20fsvqxdsj"; depends=[igraph]; }; goric = derive2 { name="goric"; version="1.1-2"; sha256="004nx29wz191rp0naa73r762bf6lap931lwrxifhz7izl47jzfj0"; depends=[MASS Matrix mvtnorm nlme quadprog]; }; gorica = derive2 { name="gorica"; version="0.1.2"; sha256="0id0xqdw4rwqviym8l0a5gnl5a68ci5f4gn4bhywmzb6fh1nxj33"; depends=[bain lavaan limSolve lme4 MASS mvtnorm quadprog]; }; gorpiper = derive2 { name="gorpiper"; version="1.0.1"; sha256="0d5406zh75rxnq9mkkvyvsfj2h42rqyjb64q2qfl8x772vx2pdb0"; depends=[cli crayon data_table fs magrittr processx purrr stringr tibble]; }; - gosset = derive2 { name="gosset"; version="0.7"; sha256="1yxrywsxixg98h8lhbsm0c7afbqmzay11ib1bg89ng1ix1b5qghv"; depends=[BradleyTerry2 DescTools ggparty ggplot2 ggrepel partykit patchwork PlackettLuce psychotools qvcalc tidyr]; }; + gosset = derive2 { name="gosset"; version="1.0"; sha256="1as3p5mpkhg205ssxzf26xn84b8abgzp413dw2fganidh7i9dmff"; depends=[BradleyTerry2 DescTools ggparty ggplot2 ggrepel partykit patchwork PlackettLuce psychotools qvcalc tidyr]; }; gotop = derive2 { name="gotop"; version="0.1.2"; sha256="1dvcgz7ha637ixjqmgcwhvl3f9kpx4fdq8im40iz8xwnxqwmrlgx"; depends=[htmltools jsonlite]; }; govStatJPN = derive2 { name="govStatJPN"; version="0.1"; sha256="03sywa7rl5rblvv370mfszz5ngp850qf32yydy1fdx10lv5amrfl"; depends=[]; }; govdown = derive2 { name="govdown"; version="0.10.1"; sha256="00ndpp3v6z2497xlhhc92pa7w93qk9x8m6ibswj9dfh978d07028"; depends=[rmarkdown]; }; @@ -10474,7 +10610,7 @@ in with self; { gpairs = derive2 { name="gpairs"; version="1.3.3"; sha256="08m1ydrr239vnhjbl47mng3i2w9bqmd8fijrwsraq5ysvn826n27"; depends=[barcode colorspace lattice MASS vcd]; }; gpbStat = derive2 { name="gpbStat"; version="0.4.0"; sha256="00s9zys6awwimdzqql7prbbpg45nyrsccjjb59pzwsr234bqpmwl"; depends=[]; }; gpboost = derive2 { name="gpboost"; version="1.0.1"; sha256="054m58wcw4xnvcj176v04444xipz0c3zc85651417lbkpycvz07k"; depends=[data_table Matrix R6 RJSONIO]; }; - gpg = derive2 { name="gpg"; version="1.2.8"; sha256="1yysjv335mq6lpdc01yiv56zhs0085bdlanh74k3ahjbszh9cy27"; depends=[askpass curl]; }; + gpg = derive2 { name="gpg"; version="1.2.9"; sha256="0k2f00l400dcxa8akhy48a34w7nhbdmpq3nz6lbwp0cqa7aj678z"; depends=[askpass curl]; }; gpindex = derive2 { name="gpindex"; version="0.4.3"; sha256="1msbp424100agcmrwiirb2i1p5q6n0nfjwysyzh08p8c6c85i4vv"; depends=[]; }; gpk = derive2 { name="gpk"; version="1.0"; sha256="1zfhkqyypb24mhbj2zi9qy3gw0kqxvlp8j5ni3zm7k5rz1bnrygg"; depends=[]; }; gplite = derive2 { name="gplite"; version="0.13.0"; sha256="0nxms34dfmbi3rz6x0yz8pn9a1v6w4k2w6jz1qrbqclmlg66g8vs"; depends=[Matrix Rcpp RcppArmadillo]; }; @@ -10482,9 +10618,9 @@ in with self; { gplots = derive2 { name="gplots"; version="3.1.3"; sha256="05k7a8x62qs5g6mps62vb3mwjdnfjzvjb20yws3x0r2j42g3p1cz"; depends=[caTools gtools KernSmooth]; }; gplsim = derive2 { name="gplsim"; version="1.0.0"; sha256="1lqw5vk23r86cks5g6vx6m8bag7pafg2w755gx16rvm5ja9l7rkj"; depends=[mgcv minpack_lm]; }; gpmap = derive2 { name="gpmap"; version="0.1.2"; sha256="1n1r4rda9v4zw8zz4vcagmkkpgirwydhqz36pyq0assxwclnkcz0"; depends=[foreach ggplot2 isotone plyr]; }; - gppm = derive2 { name="gppm"; version="0.2.0"; sha256="1n9is3xj52lsck2fiy9j320p2ca6ib36s251i7g3iz99a77b0ahh"; depends=[ggplot2 ggthemes MASS mvtnorm Rcpp rstan]; }; gprofiler2 = derive2 { name="gprofiler2"; version="0.2.1"; sha256="0r0h34b35xzgd9rh55yndn0anxy0z45zdlqa6qfmpn91b6v1bb1g"; depends=[crosstalk dplyr ggplot2 gridExtra jsonlite plotly RCurl tidyr viridisLite]; }; - gptstudio = derive2 { name="gptstudio"; version="0.1.0"; sha256="072h8fik8f9g2434dah3k3qs122zzbasadw62854a0a2dvbpnpff"; depends=[assertthat cli glue httr jsonlite magrittr purrr rlang rstudioapi shiny usethis]; }; + gps = derive2 { name="gps"; version="1.1"; sha256="1n6llhl8vjy6lzw7icpizc5pcg0xm6547n57dydv8asz4hxs68jy"; depends=[Matrix]; }; + gptstudio = derive2 { name="gptstudio"; version="0.2.0"; sha256="0zb05nasss9g99s03kiwhq9jh54zvspvzwbhdgg56v05ia6g1mz3"; depends=[assertthat bslib cli colorspace curl fontawesome glue htmltools htmlwidgets httr2 jsonlite magrittr purrr R6 rlang rstudioapi shiny shiny_i18n stringr usethis]; }; gpx = derive2 { name="gpx"; version="1.1.0"; sha256="0x9b3mnbrim690l4wnyzk47bgywvnw4h4l8qznnx7zkpqib2hn5i"; depends=[lubridate rvest xml2]; }; gqlr = derive2 { name="gqlr"; version="0.0.2"; sha256="0gzhqyrbnz3qjzkr4slryrlfhlaxm474y9fahlj0sb0hvcx68pxj"; depends=[graphql jsonlite magrittr pryr R6]; }; gquad = derive2 { name="gquad"; version="2.1-2"; sha256="09hcs2lgqnim29gpd805b5ndxi22z2xwsf25rb1zckxf9c7bn7sj"; depends=[ape seqinr]; }; @@ -10496,12 +10632,12 @@ in with self; { grade = derive2 { name="grade"; version="0.2-1"; sha256="085hfvqn880yk19axdjv3z9jr33kls212vs172a8mzhnkallph1r"; depends=[]; }; gradeR = derive2 { name="gradeR"; version="1.0.10"; sha256="1ngfrminhsk3155da0vjmvrk66nbnak8p1ns20cw32qayq6wyrr2"; depends=[callr jsonlite testthat]; }; gradientPickerD3 = derive2 { name="gradientPickerD3"; version="0.1.0.0"; sha256="0b20iqfipr7migwk1fl4lvdf4ghprqivcgmchfshhr8q82hyd1q0"; depends=[htmlwidgets jsonlite shiny]; }; - grafify = derive2 { name="grafify"; version="3.0.1"; sha256="05cmkscv8va1ihza3ry2hz3r2fvkraqacqrf20qrw5w6gimmvb8i"; depends=[car emmeans ggplot2 Hmisc lme4 lmerTest magrittr mgcv patchwork purrr tidyr]; }; - grafzahl = derive2 { name="grafzahl"; version="0.0.5"; sha256="0m7lyd7k9qqn7sxwk20sk0s306gmvrb8myx76yb61ld3dxv5wdj2"; depends=[jsonlite lime quanteda reticulate]; }; - grainscape = derive2 { name="grainscape"; version="0.4.3"; sha256="0mc9mgc70ysqal8pjslmr7dzig3d08jcdpba348hmgyh0w9b6s07"; depends=[ggplot2 igraph raster Rcpp rgdal sp]; }; + grafify = derive2 { name="grafify"; version="3.2.0"; sha256="184ci2myn2x80l3zaan9bsyrq34ag0gqs14awh83khacxlkk7my8"; depends=[car emmeans ggplot2 Hmisc lme4 lmerTest magrittr mgcv patchwork purrr tidyr]; }; + grafzahl = derive2 { name="grafzahl"; version="0.0.8"; sha256="1pccxzraz9sri69774svj3sb1fxq00lq8261z0fcm0j17mqmysyq"; depends=[jsonlite lime quanteda reticulate]; }; + grainscape = derive2 { name="grainscape"; version="0.4.4"; sha256="0c9ms97xnz7z5r2hhwbw0qpcmknp2wk327z95x751yjvgbps3lkg"; depends=[ggplot2 igraph raster Rcpp sf sp]; }; gramEvol = derive2 { name="gramEvol"; version="2.1-4"; sha256="1am5nlnyawi4lybi10ag4fdhddvbwsdzrmr6f66bzspdpl4s26g9"; depends=[]; }; grand = derive2 { name="grand"; version="0.9.0"; sha256="08lgwpkbamb7p5a59q0dp1n7np9kmmvccvg97bl7937ishx50mg5"; depends=[igraph]; }; - grandR = derive2 { name="grandR"; version="0.2.1"; sha256="186jvqldhpyqj005g34lhvnig1ign5kkzmvsmpyfsz18zc8clmhz"; depends=[cowplot ggplot2 labeling lfc MASS Matrix minpack_lm numDeriv patchwork plyr RCurl reshape2 rlang scales]; }; + grandR = derive2 { name="grandR"; version="0.2.2"; sha256="1jxw2isjdgxyr9lf71zpn1bzpy1qs7v0918m846s0a71k6dlqr6f"; depends=[cowplot ggplot2 labeling lfc MASS Matrix minpack_lm numDeriv patchwork plyr RCurl reshape2 rlang scales]; }; grangers = derive2 { name="grangers"; version="0.1.0"; sha256="15q8hv7p5g5m7v6lx6nq5394fa6p05xgawnsrn1v5aslmmbbzyvl"; depends=[tseries vars]; }; granova = derive2 { name="granova"; version="2.2"; sha256="0fs8r0q5gvdyppsiil5p3dmfqyn2xygkqarnbmyhr0znbcxzkwxp"; depends=[car]; }; granovaGG = derive2 { name="granovaGG"; version="1.4.0"; sha256="0khqlqc6jg9cpdq06g6jlpfjcw3m6rj40ipljfai8g1630ril6q4"; depends=[ggplot2 gridExtra plyr RColorBrewer reshape2]; }; @@ -10517,29 +10653,30 @@ in with self; { graphframes = derive2 { name="graphframes"; version="0.1.2"; sha256="1bv7d0sggwab4rd486ayw9gkb5ja5p5fin5pn92xnrmz8cgwsfxq"; depends=[forge sparklyr tibble]; }; graphhopper = derive2 { name="graphhopper"; version="0.1.2"; sha256="1zrnwh86jv37z07b6l1i94dgjn8k3b3a3f76gfjsyyxvlc64i76x"; depends=[dplyr googlePolylines httr jsonlite magrittr tibble]; }; graphicalExtremes = derive2 { name="graphicalExtremes"; version="0.2.0"; sha256="00nfm6dkmx9cv9j6462vvkd72x72r4yyibg5hh9jifnss9p7smjh"; depends=[corpcor edmcr glassoFast glmnet igraph mvtnorm osqp Rdpack]; }; - graphicalVAR = derive2 { name="graphicalVAR"; version="0.3"; sha256="1mvv03zkqp5f7q2nnvpj2gq1v67vp42qr7cm0a20cfvp2gsxq0h5"; depends=[dplyr glasso glmnet igraph Matrix mvtnorm qgraph Rcpp RcppArmadillo rlang]; }; + graphicalVAR = derive2 { name="graphicalVAR"; version="0.3.1"; sha256="1196h506lgp3ydm589j2r7356p6qidaffxc5qfhlkn7lnry0iil2"; depends=[dplyr glasso glmnet igraph Matrix mvtnorm qgraph Rcpp RcppArmadillo rlang]; }; graphkernels = derive2 { name="graphkernels"; version="1.6.1"; sha256="1fwl5a13mdmia374zas0vvd4dlfnp4in9gj42c0iq01icy1wq0la"; depends=[igraph Rcpp RcppEigen]; }; - graphlayouts = derive2 { name="graphlayouts"; version="0.8.4"; sha256="1zch8v0fc9lrm1pklcvi7g4g7zmqq3gxprm7pbdx018b35z8z3bp"; depends=[igraph Rcpp RcppArmadillo]; }; + graphlayouts = derive2 { name="graphlayouts"; version="1.0.0"; sha256="1favwyk5jak95jhfyadcdgr53mq8g92z3vdp2662ivaj7lg48mc9"; depends=[igraph Rcpp RcppArmadillo]; }; graphon = derive2 { name="graphon"; version="0.3.5"; sha256="1x61pdsb3s1vi1iiy9pjq0iz0m5j5b6q3rqhwvx9kvmg4r8yifpv"; depends=[Rdpack ROptSpace]; }; graphql = derive2 { name="graphql"; version="1.5.1"; sha256="10zpibqh1vsin60pl5dnk4z2kzrfc3aqrhijcn36zq7f97629wv8"; depends=[jsonlite Rcpp]; }; + graphseg = derive2 { name="graphseg"; version="0.1.0"; sha256="108i6yrwg505ndgm7j48shxs8wd2ciwm486a2nq267wpk4jrkdrz"; depends=[flsa igraph magrittr Matrix sf]; }; graphsim = derive2 { name="graphsim"; version="1.0.3"; sha256="16djk5zm2pnvfyb2783rdyi6a0gspm23br7xxgb2c8wfd9gf430n"; depends=[gplots igraph Matrix matrixcalc mvtnorm]; }; graphx = derive2 { name="graphx"; version="1.0"; sha256="1k7vq0j58yskmaqknpkhccrc5n1hh8p2fsw7419r7k6a2c3syj8a"; depends=[cubature docore jpeg magicaxis MASS plotrix png pracma raster sp]; }; + grateful = derive2 { name="grateful"; version="0.2.0"; sha256="02wwidgf3i26lkn0b4vw33zibqcv1gd93fjlkm4igcb76nlbq1cp"; depends=[knitr remotes renv rmarkdown rstudioapi]; }; grates = derive2 { name="grates"; version="1.0.1"; sha256="17xq4bjkp3rx163gjyi2j3l5jljrxf1mnmvfda7lfsinh00hxm4q"; depends=[]; }; gratia = derive2 { name="gratia"; version="0.8.1"; sha256="0k4mkkkj3kbmfj8z1nsw80xh9jmrc59sxc1n7sp3ca2cfyfszgc1"; depends=[cli dplyr ggplot2 lifecycle mgcv mvnfast nlme patchwork pillar purrr rlang stringr tibble tidyr tidyselect vctrs]; }; graticule = derive2 { name="graticule"; version="0.2.0"; sha256="0wz3yr8ylh4aj6i70dippsmqnkbjclf21fndrk6xbbkvwzvgl7kg"; depends=[geosphere raster reproj sp]; }; gratis = derive2 { name="gratis"; version="1.0.3"; sha256="1hbmqb093lxnv8gkn9vd0fsgs5a85yfdqxj5p8jmkq9078yr1vga"; depends=[doRNG dplyr foreach forecast GA generics magrittr mvtnorm polynom purrr shiny tibble tsfeatures tsibble]; }; - grattan = derive2 { name="grattan"; version="2.0.0.0"; sha256="067acsrxzdj4bxybyah4c5j8lzrj1vbmarpbngf4r59qnryj4bf8"; depends=[assertthat checkmate data_table fastmatch forecast fy hutils hutilscpp ineq magrittr zoo]; }; gravitas = derive2 { name="gravitas"; version="0.1.3"; sha256="11n85bdmigqasbq8c1amj1k7manfvs3gnax2ihsf2vp56s9c463p"; depends=[dplyr ggplot2 ggridges ineq lubridate lvplot magrittr RColorBrewer rlang shiny stringr tibble tidyr tsibble]; }; + gravity = derive2 { name="gravity"; version="1.1"; sha256="05kkprv63x9m715yv9kx2k70bqnkacc72zr0aljcj0ry10nl40c6"; depends=[censReg dplyr glm2 lmtest magrittr MASS multiwayvcov purrr Rdpack rlang sandwich survival tibble tidyr]; }; gravmagsubs = derive2 { name="gravmagsubs"; version="1.0.1"; sha256="1kc3dm2wmbwbad6sdhzs6bnpmri66142rc552cd75pijzbnymqvf"; depends=[Rcpp]; }; greatR = derive2 { name="greatR"; version="0.2.0"; sha256="0vs6sh8qc762py88lcidq4pv2i8s0vwdah5ngl0cggjjfj75nvxh"; depends=[cli data_table dplyr ggplot2 magrittr optimization purrr rlang scales stringr]; }; - grec = derive2 { name="grec"; version="1.4.1"; sha256="1vy3idjvayzx9j9pf5bv5bxycjca3w3c4x4lzzbrdi3c97508sa8"; depends=[imagine raster]; }; + grec = derive2 { name="grec"; version="1.5.0"; sha256="0k40j32l551qsnw7hry0slk0y89fiff7mgfwsk9fyz70kns64yk5"; depends=[abind imagine raster terra]; }; greed = derive2 { name="greed"; version="0.6.1"; sha256="05p24991s97h0hmvv88s3hca9b50384hm6qm771dqznqs5m4ggrq"; depends=[cba cli future ggplot2 gridExtra gtable listenv Matrix Rcpp RcppArmadillo RSpectra]; }; greekLetters = derive2 { name="greekLetters"; version="0.0.7"; sha256="0r6c4y6dnd3mm5i7y5cy7xz3w2j7qkfkkvxg9ig138has6115gjj"; depends=[assertthat stringr]; }; greeks = derive2 { name="greeks"; version="1.1.0"; sha256="1maq2vklfaf8nd8iqrsh0kib5r7p8bkgm5kk7n061lv8azggmbrq"; depends=[dqrng ggplot2 magrittr plotly Rcpp shiny tibble tidyr]; }; greenclust = derive2 { name="greenclust"; version="1.1.0"; sha256="198ix55x8cl5wx09p6ahzy3bvig86mvqf2qywjfilp6b4hnjgk7l"; depends=[]; }; greencrab_toolkit = derive2 { name="greencrab.toolkit"; version="0.1"; sha256="14sin19fqmsb0a4nhdk27bcz8n4qmsz8j7q16n1v25s3r9f4x6rd"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; gregRy = derive2 { name="gregRy"; version="0.1.0"; sha256="1b8c8wwp8r2v51ayy7rbav24wfz75z1pylg0p4vsasaw9p06dlbz"; depends=[dplyr magrittr purrr tidyr]; }; - gremes = derive2 { name="gremes"; version="0.1.1"; sha256="1i3j23ssx0grkzq1qf4naiqrfd753m992pqhxy5y7c805acm77mj"; depends=[abind copula igraph mev mvtnorm quadprog]; }; gremlin = derive2 { name="gremlin"; version="1.0.1"; sha256="1pi1bksxmjmzclppgbqqg93swf4d72d2mr8bsxv7ndcdjr69xd5r"; depends=[Matrix nlme]; }; gren = derive2 { name="gren"; version="0.0.1"; sha256="1wb5wwdjxi7q36md7xzmbw5lrggcgghkz3pmxipjpxw8kfv804xp"; depends=[glmnet Iso pROC Rcpp RcppArmadillo]; }; greport = derive2 { name="greport"; version="0.7-3"; sha256="189jjnh3yya0v79mdy3mx0859larqh1n1kkzzrcapbqah8b3vr4h"; depends=[data_table Formula ggplot2 Hmisc lattice latticeExtra rms survival]; }; @@ -10550,7 +10687,7 @@ in with self; { gretlR = derive2 { name="gretlR"; version="0.1.4"; sha256="094a4hy67j8bk6b0yfvzq5g0ydi69z0m9bqmvdgwv87b3llvpl1q"; depends=[kableExtra knitr magrittr rmarkdown]; }; grex = derive2 { name="grex"; version="1.9"; sha256="0s6nan76rrmh3yhgvzb7pqdrzx2w9px8ay4v9yiib4bamy9wmhpb"; depends=[]; }; greybox = derive2 { name="greybox"; version="1.0.8"; sha256="1lb0k9lq39k5cykq46agiq2ykwfcrdc1pncxnry750r6wqyi5sp8"; depends=[generics nloptr pracma Rcpp statmod texreg xtable zoo]; }; - grf = derive2 { name="grf"; version="2.2.1"; sha256="0b8zhynfal3km5zsixn076z03d1gjd4if1bs8mll8pvg1dhgpqs9"; depends=[DiceKriging lmtest Matrix Rcpp RcppEigen sandwich]; }; + grf = derive2 { name="grf"; version="2.3.0"; sha256="0k9g53rhjv69bklvq4b7g54hl80dvfqpd075y34j7xmal4x5rbf4"; depends=[DiceKriging lmtest Matrix Rcpp RcppEigen sandwich]; }; gridBase = derive2 { name="gridBase"; version="0.4-7"; sha256="09jzw4rzwf2y5lcz7b16mb68pn0fqigv34ff7lr6w3yi9k91i1xy"; depends=[]; }; gridBezier = derive2 { name="gridBezier"; version="1.1-1"; sha256="1n5d6svxblcxpzf79px0qjxsydpwjpnfcagnwk35ljinyd0wv68z"; depends=[]; }; gridDebug = derive2 { name="gridDebug"; version="0.5-1"; sha256="1x1bbyfbyyn13sw5pvnzns6mq57fyq2fywj8hx5k9rhqclzjqxyr"; depends=[graph gridGraphviz gridSVG]; }; @@ -10571,7 +10708,7 @@ in with self; { grobblR = derive2 { name="grobblR"; version="0.2.1"; sha256="1l1msh900kmbbszn1f9vfdix4a6180lvs3gfidp9pgkvi2gv2g01"; depends=[dplyr ggplot2 glue gridExtra magrittr png purrr RCurl stringr tibble]; }; groc = derive2 { name="groc"; version="1.0.8"; sha256="0zxwq3ha3sa58v8fhb2s41nqqpsgr3q9j7arlww1zz295mrlrs5i"; depends=[MASS mgcv pls robustbase rrcov]; }; gromovlab = derive2 { name="gromovlab"; version="0.8-3"; sha256="0mm303iiaqfdvr94x765dbd1018cvvl0q4z2zppwk1aif0kb53x8"; depends=[ape cluster glpkAPI igraph quadprog]; }; - groundhog = derive2 { name="groundhog"; version="2.2.1"; sha256="156x2l4i9lpl5qxisiajvqlq4vcwnmirx0j80vnyz0cd1p7mq5gf"; depends=[]; }; + groundhog = derive2 { name="groundhog"; version="3.1.0"; sha256="12x0wm0acksgkg6ap6rzl76a9szfrpjvksyq768n6jqr5aixchv9"; depends=[]; }; groupICA = derive2 { name="groupICA"; version="0.1.1"; sha256="1wl828ligvvw55xic383gdn7aq4mbwsnkl4ym6f71jn5g3p36d0i"; depends=[MASS]; }; groupRemMap = derive2 { name="groupRemMap"; version="0.1-0"; sha256="1bfp746j0dx7kk44nyjqmimvgw14par9ayvqxnzldc05qsazjdwx"; depends=[]; }; groupTesting = derive2 { name="groupTesting"; version="1.0.0"; sha256="00jy1gw6whslmfcqic99hmbxh2z75rj14cjzrm5mnpcajn37s66j"; depends=[pracma]; }; @@ -10587,11 +10724,11 @@ in with self; { growthPheno = derive2 { name="growthPheno"; version="2.1.19"; sha256="1cs544s2xvqv8zgy9mccz4y4qs5nncrzmi2slmwnjh94nk1481aw"; depends=[dae GGally ggplot2 Hmisc JOPS RColorBrewer readxl reshape stringi]; }; growthcleanr = derive2 { name="growthcleanr"; version="2.1.1"; sha256="18aj6wvr26srs3cfrj7rkf2d3vxqy4kn82dmfc8mazlf4f2plrra"; depends=[data_table doParallel dplyr foreach labelled magrittr plyr R_utils tidyr]; }; growthcurver = derive2 { name="growthcurver"; version="0.3.1"; sha256="1l3dqcl395nh406s7d5554r5ynk1a7v5ba5kmnv9r7lj7h9nfdjj"; depends=[minpack_lm]; }; - growthmodels = derive2 { name="growthmodels"; version="1.2.0"; sha256="1wy5z77819s3daa0mifafcjfkggsq0ac522yagj86ml3vf7yqppj"; depends=[]; }; + growthmodels = derive2 { name="growthmodels"; version="1.3.1"; sha256="1lryxdjq5ns08sqfcrsi9q2h399xr6lhxgh7kasx6pajly35vg1r"; depends=[]; }; growthrate = derive2 { name="growthrate"; version="1.3"; sha256="1ak3yqlm7dnkdjlmikwa57qnf7yd9n1ixz36gv3shr252750x9cd"; depends=[clime Matrix mvtnorm]; }; growthrates = derive2 { name="growthrates"; version="0.8.4"; sha256="04q8psz4fiibjj0pl6n7wkq83qn1aizzixww8gqdxzzsq6kay81q"; depends=[deSolve FME lattice]; }; grpCox = derive2 { name="grpCox"; version="1.0.1"; sha256="07l0gv8yc5yqp7zwqawc71kkdab6fsfrb25mp2gynlb7vabh8isy"; depends=[colorspace MASS Matrix Rcpp RcppEigen]; }; - grpSLOPE = derive2 { name="grpSLOPE"; version="0.3.1"; sha256="13502f3v8ph4wcz9dd6h77cy3hwixmkk13p0n240kvy4q69gzmx7"; depends=[Rcpp]; }; + grpSLOPE = derive2 { name="grpSLOPE"; version="0.3.3"; sha256="05417f0pnp21svi30vcbkkw16zyg1kxynfigh5w2jdjmd12cb899"; depends=[Rcpp]; }; grplasso = derive2 { name="grplasso"; version="0.4-7"; sha256="0jf48ahc6d6biwx235dlvbk1papxkqbcnvxsr93p5047pjm02y3a"; depends=[]; }; grplassocat = derive2 { name="grplassocat"; version="1.0"; sha256="0pi5vq7yqg0ha91y6296ckshxyq3135cg6zcs9x6xba5m5024k4p"; depends=[grplasso]; }; grpreg = derive2 { name="grpreg"; version="3.4.0"; sha256="1bfnahkb249996m3qmf96g4ldgnw7xfcm2wr45ccrlk3mw5x4mzx"; depends=[Matrix]; }; @@ -10601,8 +10738,9 @@ in with self; { grt = derive2 { name="grt"; version="0.2.1"; sha256="1dw5rjs82r82l6qryyyq9cczm770v4iv60d7pi1nb4b0733ndbd5"; depends=[MASS]; }; grwat = derive2 { name="grwat"; version="0.0.2"; sha256="1aaiv6q9aiw7j4fdmcgwbwv7wb6hw396h1k5ch0kl8arg6bn2s26"; depends=[crayon dplyr ggplot2 kableExtra knitr lubridate magrittr mblm progress Rcpp rlang rmarkdown stringr tidyr trend zoo]; }; gsDesign = derive2 { name="gsDesign"; version="3.4.0"; sha256="01j2s0lwb0gbnyd28zjw0rpqfn8r0zvm6x4i780yb7lgfrvqi1d5"; depends=[dplyr ggplot2 magrittr rlang tidyr xtable]; }; - gsDesign2 = derive2 { name="gsDesign2"; version="1.0.7"; sha256="02n2kb7cbkjk1and7xk7lnn9hxhxafcwnpmfpjdys281yc3a0497"; depends=[corpcor dplyr gsDesign gt mvtnorm npsurvSS purrr Rcpp rlang tibble tidyr]; }; + gsDesign2 = derive2 { name="gsDesign2"; version="1.0.8"; sha256="1pdldnqyq6qfhydikfm5r0swrbnv8q9lr0k3sf4p06zx2dsfkhsq"; depends=[corpcor dplyr gsDesign gt mvtnorm npsurvSS purrr Rcpp rlang tibble tidyr]; }; gsEasy = derive2 { name="gsEasy"; version="1.4"; sha256="1m3vrwcbkswr0b6rzyydxaibda6lv1m9kmxm9yh2sphk4mdwqxxj"; depends=[ontologyIndex Rcpp]; }; + gsMAMS = derive2 { name="gsMAMS"; version="0.7.1"; sha256="00h6b0zxhiqpgngmwazx2lpzvy3x85mbishmmqn51v4k3568dw52"; depends=[mvtnorm survival]; }; gsalib = derive2 { name="gsalib"; version="2.2.1"; sha256="145zyc2sqa0acn9crilpw5njms7w7ca3jgl499lhsahlb6ws98rx"; depends=[]; }; gsarima = derive2 { name="gsarima"; version="0.1-5"; sha256="0nmn4hlvhl8dw7pkpf010x9qjd6w8drdlcj47qv0sap8wngrwhzg"; depends=[MASS]; }; gsbDesign = derive2 { name="gsbDesign"; version="1.0-2"; sha256="1q958l9f03lk0wpcgqxqwcbj6jlgkmj6vj4gyj51pp8kfkxal59x"; depends=[gsDesign lattice]; }; @@ -10621,7 +10759,7 @@ in with self; { gsrs = derive2 { name="gsrs"; version="0.1.1"; sha256="0x5fll59l000dqszy0gmhsfqgpaljc57j1grqg5c7y1p3vji38in"; depends=[doParallel foreach MASS]; }; gss = derive2 { name="gss"; version="2.2-4"; sha256="0hbl1i687cgx9rn714s3dvbnljfiyidk5rgk3p2wmsdywggqjglm"; depends=[]; }; gstar = derive2 { name="gstar"; version="0.1.0"; sha256="1582f7jcphb32j3wdc345qa5sgm2xyimlc6r5r5jay7ca5ll8c98"; depends=[dplyr ggplot2 reshape2 xts zoo]; }; - gstat = derive2 { name="gstat"; version="2.1-0"; sha256="0vrdiyjav92wbbms8ljmv1i0l8cdjblfnmhyrsd1a7v0z93fp9jp"; depends=[FNN lattice sf sftime sp spacetime stars zoo]; }; + gstat = derive2 { name="gstat"; version="2.1-1"; sha256="09ax28di93r4r334qwdp84i95809lkr6587w4xlgpvsma7k0bcj8"; depends=[FNN lattice sf sftime sp spacetime stars zoo]; }; gstsm = derive2 { name="gstsm"; version="1.0.0"; sha256="1qkq9ghg49p09wx60k68nh871l1xz0qpzsls8lg4b038kngr9q6l"; depends=[digest]; }; gsubfn = derive2 { name="gsubfn"; version="0.7"; sha256="00j6b8b6xsx6v370h220x233rpk6asca78165y3d48jpwvwisdc9"; depends=[proto]; }; gsw = derive2 { name="gsw"; version="1.1-1"; sha256="10nxyi1kqq9ypincpr347iqixfz17nd69g7ikhyid1djqfy1v8nj"; depends=[]; }; @@ -10633,7 +10771,7 @@ in with self; { gtable = derive2 { name="gtable"; version="0.3.3"; sha256="0fkv19h64cyxsadplvyzbpjliy9wlfg56hc8znvqg972g3cmi6ig"; depends=[cli glue lifecycle rlang]; }; gte = derive2 { name="gte"; version="1.2-3"; sha256="0fnrpgfji5f1n8nra0d8xghqgsjil7r2j6xnbmfm7mjafcav4wwk"; depends=[survival]; }; gtfs2emis = derive2 { name="gtfs2emis"; version="0.1.0"; sha256="1nh3m57xhh12sm18d5lvf0i9z4ayn6kgbmp036lw89wz10s42w6z"; depends=[checkmate data_table furrr future gtfs2gps sf sfheaders terra units]; }; - gtfs2gps = derive2 { name="gtfs2gps"; version="2.1-0"; sha256="1z9nlc5lcn9vhqc1y25m5cqvgb8rnnrwnqsxrnmq7cr9shs6dkm5"; depends=[checkmate data_table furrr future gtfstools lwgeom progressr Rcpp sf sfheaders terra units]; }; + gtfs2gps = derive2 { name="gtfs2gps"; version="2.1-1"; sha256="0k65iy7armdn13bs31wr6gq7hdxpz5nqqzpdxpm5g1mkxwc9fi1g"; depends=[checkmate data_table furrr future gtfstools lwgeom progressr Rcpp sf sfheaders terra units]; }; gtfsio = derive2 { name="gtfsio"; version="1.1.0"; sha256="08s9p6r18axf9rh91qqqh4bkn4l39vs7hhws1502zlxkjaqbypdz"; depends=[data_table zip]; }; gtfsrouter = derive2 { name="gtfsrouter"; version="0.0.5"; sha256="0yxgc4pi0g2wqswvwba0ij263i8b8p6wgsy6hbvklq0gim616shi"; depends=[cli data_table geodist Rcpp]; }; gtfstools = derive2 { name="gtfstools"; version="1.2.0"; sha256="03gc784dvskvg8m0fcqc966ka0slnh10in5gk7bba8h7lnfb893w"; depends=[checkmate cpp11 curl data_table gtfsio processx sf sfheaders units zip]; }; @@ -10641,13 +10779,14 @@ in with self; { gto = derive2 { name="gto"; version="0.1.1"; sha256="111jla0acxpb749ncr77lnbxk7hmsv8syin1p2cs1d1fr2jxkzs1"; depends=[gt magrittr officer rlang xml2]; }; gtools = derive2 { name="gtools"; version="3.9.4"; sha256="04gihp78x2caahqvf0mlv1cqy1m121l6hkdvbp01r2z99wcqpksr"; depends=[]; }; gtop = derive2 { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts lassoshooting quadprog]; }; + gtranslate = derive2 { name="gtranslate"; version="0.0.1"; sha256="1ag0qkp5dnsj6vnwjyf4lw7kr37xzj5lkkr0b2y24pfx7alb33sv"; depends=[httr rvest]; }; gtreg = derive2 { name="gtreg"; version="0.2.0"; sha256="0ivg1chwn4igy9df5c8dmq5r2ryjwasqvdi8q4xfysjxij97hd6s"; depends=[broom_helpers cli dplyr forcats glue gtsummary purrr rlang stringr tibble tidyr]; }; gtrendsR = derive2 { name="gtrendsR"; version="1.5.1"; sha256="05bfcc77bg2ndl83l0lv7rs4slxcflv9h2pfij8a3j1k9r9lwp2x"; depends=[anytime curl ggplot2 jsonlite]; }; - gtsummary = derive2 { name="gtsummary"; version="1.7.0"; sha256="1l1ncdx3cnvjk81q4d8a8agv7mh3986r8v5qgdg3wby6nz20bvbk"; depends=[broom broom_helpers cli dplyr forcats glue gt knitr lifecycle purrr rlang stringr tibble tidyr vctrs]; }; + gtsummary = derive2 { name="gtsummary"; version="1.7.1"; sha256="0s5dpl5bxxhh0wvfbc7pk1fnff7qlii23b52i5amawr3c5xmgpp1"; depends=[broom broom_helpers cli dplyr forcats glue gt knitr lifecycle purrr rlang stringr tibble tidyr vctrs]; }; guaguas = derive2 { name="guaguas"; version="0.3.0"; sha256="0ngdwg297ndn763vx0qnvcsy5bhsr026hv8hvwgrz5w32mpw252d"; depends=[]; }; guardianapi = derive2 { name="guardianapi"; version="0.1.1"; sha256="17xmmr6pfzhdnmf45jzvk84gbfnmlw1qfv1gqjaw85vgm8b6jn6l"; depends=[dplyr httr jsonlite rlang tibble]; }; guess = derive2 { name="guess"; version="0.1"; sha256="198pxi0yipgm9wccpj3y4a0gkibhyxcmb7v5dz7ipzrk44ha5g6j"; depends=[Rsolnp]; }; - guidedPLS = derive2 { name="guidedPLS"; version="0.99.0"; sha256="0afl7hrqy3y7rdzng6n4nmw8pacp2pymkzpmrm1f4kw8fsq0g2jv"; depends=[irlba]; }; + guidedPLS = derive2 { name="guidedPLS"; version="1.0.0"; sha256="1gmprd6a5nyglm36sdyk9dqbgqavf3a7gzjbm5jzb5ybhj9r2w61"; depends=[irlba]; }; guildai = derive2 { name="guildai"; version="0.0.1"; sha256="1y3m1756450dzcz1m8fdj53p2bw9zhisnp67fr2fhmv6kga37995"; depends=[config dplyr jsonlite processx rappdirs readr rlang rstudioapi tibble yaml]; }; guiplot = derive2 { name="guiplot"; version="0.4.0"; sha256="0l6m754b93xlx8mwmskll5l9pwsmn7h5xgysccw8lvvs5lzd1alc"; depends=[DT excelR ggplot2 magrittr R6 rlang shiny svglite]; }; guix_install = derive2 { name="guix.install"; version="1.0.0"; sha256="0s3wb5781yc43c9zwrn7i87zcbrlx7xr0ms0v9hvgs7qsv02id9j"; depends=[RUnit]; }; @@ -10672,23 +10811,23 @@ in with self; { gym = derive2 { name="gym"; version="0.1.0"; sha256="0vcwzgawqwjsf65hr1mbjkz3px8zsibfkn42jpsg39n13jpfjq8v"; depends=[httr jsonlite]; }; gyro = derive2 { name="gyro"; version="1.1.1"; sha256="0zjx30nbr6am388nac8098q9jbimspk31frayd50qrqh5pirbp0g"; depends=[clipr cxhull Morpho plotrix purrr randomcoloR RCDT Rcpp rgl rstudioapi Rvcg]; }; h0 = derive2 { name="h0"; version="1.0.0"; sha256="0wdf9grp6dnipcd6751wflkq5h4wgl9dmcx4hqly21lw162jq3yn"; depends=[]; }; - h2o = derive2 { name="h2o"; version="3.40.0.1"; sha256="1q61hcyrjxj9xnkri9k4vc1g238wr916g23420y2qj0fr529bdhm"; depends=[jsonlite RCurl]; }; + h2o = derive2 { name="h2o"; version="3.40.0.4"; sha256="0yxb2vs5qfvs5qlxrraa3012xr84gx9pn842kbqmim344qvgd09w"; depends=[jsonlite RCurl]; }; h2o4gpu = derive2 { name="h2o4gpu"; version="0.3.3"; sha256="004sskj3a1mzjfh86m0rq02z1f3kd6650bzv1d3j8pj0xdmqb86c"; depends=[magrittr reticulate]; }; - h2otools = derive2 { name="h2otools"; version="0.1"; sha256="1fflk7zzvgxzs1cadpw519p41fcr8rinhjzyqkllf9lnv6hpq3yd"; depends=[curl h2o]; }; + h2otools = derive2 { name="h2otools"; version="0.3"; sha256="105zc76yi03ib5l6366an472hnf3m0pk1mwghwn8pwi91pfybzzr"; depends=[boot curl h2o]; }; h3jsr = derive2 { name="h3jsr"; version="1.3.1"; sha256="04h905p3xpaswpx728kp7z6bgqlncgzikfv6njvgvzbhmpfn9fs8"; depends=[geojsonsf sf tidyr V8]; }; hBayesDM = derive2 { name="hBayesDM"; version="1.2.1"; sha256="1vy1kaffviidhil39n7k2fr5rjgzkhkaj1r2nhmp908snq8nhf2m"; depends=[BH data_table ggplot2 loo Rcpp RcppEigen rstan StanHeaders]; }; hIRT = derive2 { name="hIRT"; version="0.3.0"; sha256="0s0i6p9iv0yv0l15dnwkpcmc91751jyjs1y1nz671lz6jpb8rz5c"; depends=[ltm Matrix pryr rms]; }; hJAM = derive2 { name="hJAM"; version="1.0.0"; sha256="1pnjcn54zi4d7h9zc9wr1gv51dzb0vasfcrw4c1kqymhxsq2yfh3"; depends=[dplyr ggplot2 ggpubr reshape2]; }; hNMF = derive2 { name="hNMF"; version="1.0"; sha256="08xn9i24dcykvbcsqzmk33li5fm1alkvcmq2fp0a2ysw4lvwfwqs"; depends=[MASS NMF nnls oro_nifti rasterImage]; }; hR = derive2 { name="hR"; version="0.2.50"; sha256="1zslalsb2zi6b91fb2k1m0vsbsdazls2gnnl7gv2xqvn6kdh4nf6"; depends=[data_table knitr rhandsontable shiny]; }; - hSDM = derive2 { name="hSDM"; version="1.4.1"; sha256="1jwqjzr0zpckzh2jpqh17v6ypq4mzn5khlv6p37y59zz8bh9mvxp"; depends=[coda]; }; + hSDM = derive2 { name="hSDM"; version="1.4.2"; sha256="11c1q7sxaisrpi0d9zskys71n2j36r0f66yay1w3bvkacpxnkwfd"; depends=[coda]; }; haarfisz = derive2 { name="haarfisz"; version="4.5.3"; sha256="1qrp4hwxrj7nf7lrxvhwgi9vky0wbyfd165b8idavj0b2n29s98n"; depends=[wavethresh]; }; habCluster = derive2 { name="habCluster"; version="1.0.5"; sha256="1cjmhq8krkv4g1vy70kc3j667djzmq38xlqn568f437f6jaglvkp"; depends=[igraph raster Rcpp sf stars]; }; hablar = derive2 { name="hablar"; version="0.3.2"; sha256="0mzk4nwsamf07cbscn8zjiqdf6ik0dc9c4v8cafrlsv1wxpbs09i"; depends=[dplyr lubridate purrr]; }; hackeRnews = derive2 { name="hackeRnews"; version="0.1.0"; sha256="0vrdbk4dxbykb3hs35nxkl3s2ds92gs5qz66p85w8j5zjmwbw2x6"; depends=[future_apply httr jsonlite tibble]; }; hacksaw = derive2 { name="hacksaw"; version="0.0.2"; sha256="1ls4l53bsaxyd6lwka9z9sb6ypa2ymbxpfxhsj9k966031jv2vk3"; depends=[dplyr magrittr purrr rlang tibble tidyselect zeallot]; }; hacksig = derive2 { name="hacksig"; version="0.1.2"; sha256="0sc35vyi00r2b3hgn1xw2zffd704adschjwhx0niv5a1l33dxbkp"; depends=[dplyr future_apply rlang tibble tidyr]; }; - hagis = derive2 { name="hagis"; version="3.1.4"; sha256="10fw0s2jn0jvrmg6s3l0vzs5lvysqali5axdhbzpq6xfy376aik3"; depends=[data_table ggplot2 pander]; }; + hagis = derive2 { name="hagis"; version="3.1.6"; sha256="1caa9yndj19in5vzcm4dhwhwkwy48017771as7yc7rsp899vm5mg"; depends=[data_table ggplot2 pander]; }; hakaiApi = derive2 { name="hakaiApi"; version="1.0.2"; sha256="0lxqk4cp1s1sm3nbsp74q1bpklmph620c2f1kii97h6yimnq9bi0"; depends=[dplyr httr R6 readr tibble]; }; hal9001 = derive2 { name="hal9001"; version="0.4.3"; sha256="132qnrk6rm2qc5gw17iw61plx1ghnyzi7km8bp36vnqn19x9wj7j"; depends=[assertthat data_table glmnet Matrix origami Rcpp RcppEigen stringr]; }; haldensify = derive2 { name="haldensify"; version="0.2.3"; sha256="071lgx6j92n40bjlrp3khmnavvkla371rkm1ssx20ig5pkay23pw"; depends=[assertthat data_table dplyr future_apply ggplot2 hal9001 matrixStats origami Rdpack rlang rsample scales tibble]; }; @@ -10706,7 +10845,7 @@ in with self; { haplo_stats = derive2 { name="haplo.stats"; version="1.9.3"; sha256="1nwxmx3v0085bdr14sr1n4wpipyp1bdq9qhx2gxmx9h3l02glkis"; depends=[arsenal rms]; }; haplotyper = derive2 { name="haplotyper"; version="0.1"; sha256="0pcshlh29c4zazhkcq4371kqh9inrbx494y5a1qb1k2c92fkax31"; depends=[]; }; haplotypes = derive2 { name="haplotypes"; version="1.1.2"; sha256="07grdwli0kxnnnf7mg8z7gjpny88h71vf867g50f08yybgb46y70"; depends=[ape network phangorn plotrix sna]; }; - happign = derive2 { name="happign"; version="0.1.8"; sha256="1xinrjsk37licqbvqx0hyyqxb50vj1zi10ikzq6wfx7qnvdrv4nh"; depends=[archive checkmate dplyr geojsonsf httr2 sf terra xml2]; }; + happign = derive2 { name="happign"; version="0.1.9"; sha256="14y4z797kzcm98i4ck8ps21kchlkm9lqs98w72188rw80yxr6dfw"; depends=[archive dplyr geojsonsf httr2 sf terra xml2]; }; happytime = derive2 { name="happytime"; version="0.1.0"; sha256="03iblwb6w2dh9sibfi4nlswidck13hzsn7123838zp4sxfnrp041"; depends=[]; }; hapsim = derive2 { name="hapsim"; version="0.31"; sha256="0jw6iw89d4y8wjy58biv40szp123ql7frz1mmdjdxljmwaby963h"; depends=[MASS]; }; hardhat = derive2 { name="hardhat"; version="1.3.0"; sha256="0bp83yw7j34iwir2f73ainic11cdz0q18m5v1kbx8vdsw84z17zy"; depends=[cli glue rlang tibble vctrs]; }; @@ -10724,7 +10863,7 @@ in with self; { hawkesbow = derive2 { name="hawkesbow"; version="1.0.2"; sha256="0abbarpwlbasgmp0cr8144x2aqkmqf2i99pqd9g9sp9bxbg66056"; depends=[BH nloptr Rcpp RcppArmadillo]; }; hazer = derive2 { name="hazer"; version="1.1.1"; sha256="1d1qj6mamgxlvxq2hjik69zfzackjz5819iss98jf5gdbdngw41x"; depends=[]; }; hbal = derive2 { name="hbal"; version="1.2.8"; sha256="15id1r3h3h5pv0yahkcgzav8qhacha4wn688p7hmxpsq84d63xky"; depends=[estimatr ggplot2 glmnet gridExtra gtable nloptr Rcpp RcppEigen stringr]; }; - hbamr = derive2 { name="hbamr"; version="1.0.5"; sha256="1fn7d8mhwbsdqflnd9kqfqm0zp23v6b17gicl1x8kxrsadmj0qfr"; depends=[BH dplyr ggplot2 loo matrixStats pbmcapply plyr RColorBrewer Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tidyr]; }; + hbamr = derive2 { name="hbamr"; version="1.1.1"; sha256="0jjdyr7slzkpk7qggm9hl55nlrii24iy71whp5bm8in6nz9kbj37"; depends=[BH dplyr ggplot2 loo matrixStats pbmcapply plyr RColorBrewer Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tidyr]; }; hbbr = derive2 { name="hbbr"; version="1.1.2"; sha256="09sph4vliyb63pd0abq02ix5wz373r70kgldw44fm279zq4z772h"; depends=[R2jags]; }; hbim = derive2 { name="hbim"; version="1.1"; sha256="1i4fx132xnkb1jp4ikhfibcxp47klsv08vbrj63mqfqr872b29mh"; depends=[mvtnorm]; }; hbmem = derive2 { name="hbmem"; version="0.3-3"; sha256="1rajd5h9gp0rrpc0q0m0fx37mv2n70da3gnfvvnjc5a77mzfyqkp"; depends=[]; }; @@ -10734,6 +10873,7 @@ in with self; { hce = derive2 { name="hce"; version="0.5.0"; sha256="0fw2g4014g69mmy7zqhll41d9s5brklmjx1c2hzkdili86xzhfky"; depends=[]; }; hchinamap = derive2 { name="hchinamap"; version="0.1.0"; sha256="1pia593g50zf3286f9g51slkvrpj1iy7lws9d7a3nqgb2v3yji1y"; depends=[htmlwidgets]; }; hcidata = derive2 { name="hcidata"; version="0.1.0"; sha256="16qzll0rhfc6szi9y5hxycq5462jm78kla70fnv1sqw7n34pvpg5"; depends=[Rdpack]; }; + hclust1d = derive2 { name="hclust1d"; version="0.0.1"; sha256="023bks0phy8sl2s8jmrj64dpxs8s63298lhnq37clcbf6kcjk180"; depends=[Rcpp]; }; hctrial = derive2 { name="hctrial"; version="0.1.0"; sha256="19li8i8hx0r3b63q80cnj6pr72rdbmykxq0kcfbn4azq3sdd046y"; depends=[clinfun GenBinomApps]; }; hdImpute = derive2 { name="hdImpute"; version="0.1.1"; sha256="16p5mkapgsnb8mr74388hzrvbmn2njql3v3lk9902mdp565pk9ya"; depends=[cli dplyr magrittr missRanger plyr purrr tibble tidyselect]; }; hda = derive2 { name="hda"; version="0.2-14"; sha256="0azfxyws7yslcqplfddmdp5ngk91j5h7llvrg77yh5z0kkd09j1b"; depends=[e1071]; }; @@ -10745,21 +10885,23 @@ in with self; { hdf5r = derive2 { name="hdf5r"; version="1.3.8"; sha256="0arhs9z3rhqkb3pkhdgf1kgyhzrgvrrfjj4phijpji2przi82cmm"; depends=[bit64 R6]; }; hdfqlr = derive2 { name="hdfqlr"; version="0.6-2"; sha256="07lfr0vblahh3xhckwmzbmlja0janb73qkl4663mqgp6xk21jmi1"; depends=[]; }; hdi = derive2 { name="hdi"; version="0.1-9"; sha256="0k35zqz58lcx5p7ijhks4j7kqp553zggvrx4lh6k4s85lp601x22"; depends=[glmnet linprog MASS scalreg]; }; - hdiVAR = derive2 { name="hdiVAR"; version="1.0.1"; sha256="0rq5vsi0s3y9rkkzijkicrlg55vjqklniizmx4dqs3ib18jbh94l"; depends=[abind lpSolve]; }; + hdiVAR = derive2 { name="hdiVAR"; version="1.0.2"; sha256="1vvsi1irnbjnyliz9wh783kbjkyz8agfbrx10436fsf8x33d1qs8"; depends=[abind lpSolve]; }; hdm = derive2 { name="hdm"; version="0.3.1"; sha256="1kibfc1fc94y1vk06nn0yfvpdzcm30a1jn89lqqfma70x5jpa25s"; depends=[checkmate Formula ggplot2 glmnet MASS]; }; - hdme = derive2 { name="hdme"; version="0.5.1"; sha256="1lvy3h1dxs756755nzygg75pbg4lvsdvpchpp6kw11w3zsz9r7b1"; depends=[ggplot2 glmnet Rcpp RcppArmadillo Rdpack Rglpk]; }; + hdme = derive2 { name="hdme"; version="0.6.0"; sha256="04s9r29yjirkzki6drcyglh2hd712habzdgpw0fnf3cy9960wv4v"; depends=[ggplot2 glmnet Rcpp RcppArmadillo Rdpack Rglpk rlang]; }; hdmed = derive2 { name="hdmed"; version="1.0.0"; sha256="19n1m8wrzwf4lvmfw1bgyhymxv79irs341yfnhlc8znq4nm35yfh"; depends=[bama foreach freebird gcdnet genlasso hdi iterators MASS mediation ncvreg]; }; - hdnom = derive2 { name="hdnom"; version="6.0.1"; sha256="0hgsybszcwnmw4cbacz257w0ck0zv31gl2w71n644q9byrihdqyj"; depends=[foreach ggplot2 glmnet gridExtra ncvreg penalized survival]; }; + hdnom = derive2 { name="hdnom"; version="6.0.2"; sha256="0i6wzffi5jww4wjp3f7vgnb8b9zfpsam2wyz9p7376r297j3hv66"; depends=[foreach ggplot2 glmnet gridExtra ncvreg penalized survival]; }; hdpGLM = derive2 { name="hdpGLM"; version="1.0.2"; sha256="1kan4nm4kd40xqagkly4pvahra0xsdlr5wyxgm567c22fzwp7khg"; depends=[coda data_table dplyr formula_tools ggjoy ggplot2 ggpubr ggridges Hmisc isotone LaplacesDemon magrittr MASS MCMCpack mvtnorm purrr questionr Rcpp RcppArmadillo rprojroot stringr tibble tidyr tidyverse]; }; hdpca = derive2 { name="hdpca"; version="1.1.5"; sha256="0xcakpnp363lz98y3h87p1yhj0gs3f94gx2i8kz4mcizn1ll5xbd"; depends=[boot lpSolve]; }; hdrcde = derive2 { name="hdrcde"; version="3.4"; sha256="16qlk44cjvn2s0vzaf915df65ksdx20dbxhy7fpdqins46hccha3"; depends=[ash ggplot2 KernSmooth ks locfit RColorBrewer]; }; hds = derive2 { name="hds"; version="0.8.1"; sha256="1smg5ixrl7f2x3wn7s5i26dyadn5sigpf4jsk236z1bhnz617ax4"; depends=[survival tensor]; }; - hdtg = derive2 { name="hdtg"; version="0.2.0"; sha256="11shszhgpm8aka2awxyrnxpq8f8sdgw9b97mvdz5yb9xbm9kl57z"; depends=[mgcv Rcpp RcppEigen RcppParallel RcppXsimd Rdpack]; }; headliner = derive2 { name="headliner"; version="0.0.3"; sha256="1llq007b032q526csfxxwrrwaxkzgq8wl4g4cr65j8biwwynpaba"; depends=[dplyr glue lubridate purrr rlang tibble tidyr]; }; healthcare_antitrust = derive2 { name="healthcare.antitrust"; version="0.1.3"; sha256="0m839fjklx2m52ilpbxpigjl7qphgk0hbi4rvjvx9y8gsp9xfnmd"; depends=[]; }; healthfinance = derive2 { name="healthfinance"; version="0.1.0"; sha256="163zhdd5mqp0q872dmr3xzw2ppapnwp46rr7vkkfnglz635nxvpz"; depends=[ggplot2 lubridate readr scales shiny tibble]; }; + healthyR = derive2 { name="healthyR"; version="0.2.1"; sha256="0wlw6sd187sw5ar58c4a5yz9fw0bc044cik1xsq54ipp4xprlnxp"; depends=[cowplot dplyr ggplot2 lubridate magrittr plotly purrr rlang scales sqldf stringr tibble timetk writexl]; }; healthyR_ai = derive2 { name="healthyR.ai"; version="0.0.13"; sha256="0qck4118f0kg9rfnmjc14qh7kdzvxh28rdlydhz8i5j91a6731a4"; depends=[broom dials dplyr forcats ggplot2 ggrepel h2o magrittr modeltime parsnip purrr recipes rlang tibble tidyr tune workflows yardstick]; }; - healthyR_data = derive2 { name="healthyR.data"; version="1.0.2"; sha256="0hm3jp577bjzdv28dxxnz57yybhbfglwh9vgmrc4sz06y77gqbvc"; depends=[]; }; + healthyR_data = derive2 { name="healthyR.data"; version="1.0.3"; sha256="1bbxy7x7q1jn5l48li3pfiqisxrfw87nql20v5c2f06m67mn2mq8"; depends=[dplyr janitor rlang]; }; + healthyR_ts = derive2 { name="healthyR.ts"; version="0.2.8"; sha256="0xjhc2g4n4cjwkm6lxk01xk7y75q0whrbc5zkxmn4jgf6mynsp6d"; depends=[cowplot dplyr forcats ggplot2 hardhat lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyr timetk workflowsets]; }; + healthyverse = derive2 { name="healthyverse"; version="1.0.4"; sha256="1h3d8wq6if1nkqc1d3n6y0g7i7xsvx9ci09z3jvhqx62f464ybgm"; depends=[cli crayon dplyr healthyR healthyR_ai healthyR_data healthyR_ts magrittr purrr rlang rstudioapi tibble tidyAML TidyDensity]; }; heapsofpapers = derive2 { name="heapsofpapers"; version="0.1.0"; sha256="1b88ff4j6rh0qif43iyb12wipkkjmp5qx33qfzgffr5m54df4kfy"; depends=[aws_s3 curl dplyr fs magrittr rlang scales]; }; heatex = derive2 { name="heatex"; version="1.0"; sha256="0c7bxblq24m80yi24gmrqqlcw8jh0lb749adsh51yr6nzpap6i9n"; depends=[]; }; heatmap3 = derive2 { name="heatmap3"; version="1.1.9"; sha256="0sfvizmmwfk1bjhn6zfx5a4qqfgj1ldg8x90b65crqibgfa36k2r"; depends=[fastcluster]; }; @@ -10777,14 +10919,14 @@ in with self; { hellorust = derive2 { name="hellorust"; version="1.0.1"; sha256="10vkj15jz0qdgxcj2dksizkw2x15bhwnh4q0sp0g8854x88b7f7x"; depends=[]; }; helminthR = derive2 { name="helminthR"; version="1.0.10"; sha256="0ssw0smxc5zx3d189fq8c6kdg6d7db1sd5iblhz54pg41j9fvqhq"; depends=[httr magrittr plyr rvest taxize xml2]; }; helsinki = derive2 { name="helsinki"; version="1.0.6"; sha256="1hsmxnfzbi8xvqz97rmq225w9prhxc558slmfxg03y5wpjqdpq4a"; depends=[curl dplyr httr jsonlite purrr sf xml2]; }; + hemispheR = derive2 { name="hemispheR"; version="0.1.0"; sha256="14pfzd99g4vq3lcfqhg3c44cm490c6692q5xvxh2vlby8fvi5y9s"; depends=[autothresholdr dplyr jpeg magrittr plotrix raster rlang scales sp tidyr]; }; heplots = derive2 { name="heplots"; version="1.4-2"; sha256="1knk7w23x3ycxr79vfp9399xfcrrj46bkzxbav3m9z9r36bx6j2x"; depends=[broom car magrittr MASS purrr tibble]; }; here = derive2 { name="here"; version="1.0.1"; sha256="0srlr8h8qmr0wrmp7gs4g2ry5dni2hx8n947bik3s3a26f091v88"; depends=[rprojroot]; }; hereR = derive2 { name="hereR"; version="0.9.1"; sha256="1csy6lh0hbfdrm0pmcmmwp8gm8ykr4sx78sgjrp18xm4axx3a5j7"; depends=[crul curl data_table flexpolyline jsonlite sf stringr]; }; hergm = derive2 { name="hergm"; version="4.1-10"; sha256="04vr5mmsr39rpjnans8xwp1z304rd3hi5za7qhjv7dn5s8c8pw9h"; depends=[ergm igraph intergraph latentnet Matrix mlergm network Rcpp sna stringr]; }; - heritEWAS = derive2 { name="heritEWAS"; version="0.2.0"; sha256="0yss9vf2m9szq8xi5i2nhf85mfvzvhv6c1f4kvvb2z9lmaicjni5"; depends=[]; }; heritability = derive2 { name="heritability"; version="1.3"; sha256="0a0pw8hppkgypl4jaa38hks9nxfwz2zbsd4w6w40j1hxlyy4km8m"; depends=[MASS]; }; hermite = derive2 { name="hermite"; version="1.1.2"; sha256="0j9s7ayvbvmgwybrvf703b72qbn8gskb105pis19ig2sslllzda3"; depends=[maxLik]; }; - hermiter = derive2 { name="hermiter"; version="2.2.0"; sha256="0cfww9klf6iziac6p8psjbjixq1p85bsb2fl8nldhjz9psi9fk5x"; depends=[BH Rcpp RcppParallel]; }; + hermiter = derive2 { name="hermiter"; version="2.3.0"; sha256="190arngwpiankyxyd47i9kagq4gbzj023y8qybd81bm4r9jn3ax6"; depends=[BH Rcpp RcppParallel]; }; hero = derive2 { name="hero"; version="0.4.7"; sha256="129v2pjbxm5aalr5lfx0kh20rhwksnb80pc459pxg0xkwxvy1l3d"; depends=[fields Matrix optimx pbapply rgeos sp]; }; hesim = derive2 { name="hesim"; version="0.5.3"; sha256="115c6f0i0j7i4k2rf5m6f4a9v8mz99mfvv560v0v12g9gjj9lncb"; depends=[data_table flexsurv ggplot2 MASS msm R6 Rcpp RcppArmadillo survival]; }; hetGP = derive2 { name="hetGP"; version="1.1.5"; sha256="0cdhqv9jy28hdbx3rd10zl1a0awv8y8wkhfbh4nfrz26y1329qc4"; depends=[DiceDesign MASS Rcpp]; }; @@ -10811,7 +10953,7 @@ in with self; { hgm = derive2 { name="hgm"; version="1.23"; sha256="15prmsbs5zq12r6nrg2ibq2y8qfyrp9vq1g4jm258m0alrxnjx8w"; depends=[deSolve]; }; hgnc = derive2 { name="hgnc"; version="0.1.2"; sha256="007kvwwww073n6kd4bmws73g4ld7q769yixsnyq0pmczxk4ykbx4"; depends=[dplyr hms httr jsonlite lubridate magrittr purrr readr rlang rvest stringr tibble]; }; hgutils = derive2 { name="hgutils"; version="0.2.11"; sha256="0l288fqymh2i4dngy909gi8b4c9hdis02gqwyyvy6r8xzisk4m44"; depends=[crayon dplyr limSolve lubridate magrittr stringr usethis]; }; - hgwrr = derive2 { name="hgwrr"; version="0.2-3"; sha256="1lxmbl8jn54j1m91yr5dyr1wx4bsvq9pr3896hav78v465bhr4k5"; depends=[Rcpp RcppArmadillo]; }; + hgwrr = derive2 { name="hgwrr"; version="0.3-0"; sha256="0m3h5zwdnj4l7i6nh0mrjj4wprajgazninzffxpy14g7fy907ifn"; depends=[Rcpp RcppArmadillo]; }; hhh4contacts = derive2 { name="hhh4contacts"; version="0.13.1"; sha256="1cqwn09iqgh6131cm4b5j0kx7k5vil0ak42v064g4maayj0yqy7p"; depends=[surveillance]; }; hhi = derive2 { name="hhi"; version="1.2.0"; sha256="1yl52c3nqdi8v60sr01l0vv8359803dm2i4c9ifazgj3h3a4h0yp"; depends=[ggplot2]; }; hhsmm = derive2 { name="hhsmm"; version="0.3.5"; sha256="0kn6zn46fs5rl3n3hqi623hn996fbg2ikrzks4jkkh0a6jj8h6md"; depends=[CMAPSS magic MASS mice mvtnorm progress Rcpp Rdpack splines2]; }; @@ -10823,7 +10965,7 @@ in with self; { hierNet = derive2 { name="hierNet"; version="1.9"; sha256="0fdnj50s985w06wrjc67hcy6fc4lj8jbxlskgrli9m0181vbdj69"; depends=[]; }; hierSDR = derive2 { name="hierSDR"; version="0.1"; sha256="164l7gw5bkg09mfs0rnqwfsbgr4mppc0skbmqk2d98mcvvmmcwd7"; depends=[lbfgs locfit MASS Matrix numDeriv optimx]; }; hierarchicalDS = derive2 { name="hierarchicalDS"; version="3.0"; sha256="16d6l3y21nhynfjk4swp3pnjr6vhcxq369djgxz907zsjby35gkz"; depends=[coda ggplot2 Matrix mc2d MCMCpack mvtnorm rgeos truncnorm xtable]; }; - hierarchicalSets = derive2 { name="hierarchicalSets"; version="1.0.2"; sha256="0m5mnx1zmiscj0k1gnljr7fla4y1qhysi32a8q9jlah2q7grk7x9"; depends=[ggdendro ggplot2 gtable MASS Matrix RColorBrewer Rcpp scales]; }; + hierarchicalSets = derive2 { name="hierarchicalSets"; version="1.0.4"; sha256="0i0dl2r1gc8ckk2hb498km9bgsqbj7fp8gpp8778rba001nvgwx7"; depends=[ggdendro ggplot2 gtable MASS Matrix patchwork RColorBrewer Rcpp scales viridis]; }; hierfstat = derive2 { name="hierfstat"; version="0.5-11"; sha256="0nyb5091lr8ma9vydbssyx9503601rynlrbldv98mmrmh74h6v41"; depends=[ade4 adegenet gaston gtools]; }; highDmean = derive2 { name="highDmean"; version="0.1.0"; sha256="0z81iw1nb8y4pvmhk8ay9pq4kvqxwxwv8q6p47hy8s2b465sfy1f"; depends=[]; }; highMLR = derive2 { name="highMLR"; version="0.1.1"; sha256="0jkv6blkzdnn263wxy7p0hspgf5fchl5fbmzpqb5lfvl2f3pi3j9"; depends=[coxme dplyr gtools missForest mlr3 mlr3learners R6 survival tibble]; }; @@ -10837,7 +10979,8 @@ in with self; { highmean = derive2 { name="highmean"; version="3.0"; sha256="1lq7z0l1737j4wvsy7951405afylyywp7vf2i7girzh459fdfzpc"; depends=[MASS mnormt mvtnorm]; }; highr = derive2 { name="highr"; version="0.10"; sha256="0yrlpjs8qzq1d7iy4gypnf4x1gvxq6vaghkdh1kfv433yqgvqmgc"; depends=[xfun]; }; highriskzone = derive2 { name="highriskzone"; version="1.4.8"; sha256="167xj46v3m85pbwxw8cm0jcb1b8srqggsnk6wbjv2b0vgxm65rzg"; depends=[deldir fields ks maps Matrix mvtnorm rgeos spatstat spatstat_explore spatstat_geom spatstat_random]; }; - highs = derive2 { name="highs"; version="0.1-6"; sha256="1wfpgwqmz08dlfz33wlzswrk9b6sywa1g30srzpb1rfkdzv3ark0"; depends=[checkmate Rcpp]; }; + highs = derive2 { name="highs"; version="0.1-10"; sha256="1vjmzbfydlm434fa1mkwwfcdhmn6sq4ppib26nxfa9zakr7h7q2c"; depends=[checkmate Rcpp]; }; + hightR = derive2 { name="hightR"; version="0.3.0"; sha256="0d4p9qcj7z0ayk4nb3pxnfwww29d7ks0jzavxsbz6m82g7x1pmyh"; depends=[]; }; higlasso = derive2 { name="higlasso"; version="0.9.0"; sha256="09d500jsxlrv658i90xnb2wj1ad89v1iwb6y7vascyvg3cff104h"; depends=[gcdnet gglasso purrr Rcpp RcppArmadillo]; }; higrad = derive2 { name="higrad"; version="0.1.0"; sha256="0q9av8qyvmvgy6a3l7svcmbkjjgnp4iny1cld4g3qsbaz3yp3jaj"; depends=[Matrix]; }; hilbert = derive2 { name="hilbert"; version="0.2.1"; sha256="1vw1rn5adnqi99v5w47jmqx35rqv0slas3ldw7g34il1krz9xhms"; depends=[cpp11]; }; @@ -10865,6 +11008,7 @@ in with self; { hive = derive2 { name="hive"; version="0.2-2"; sha256="0ihghpfsk73lndrfrk5907kdsih9s0a7xq23zcyfaa05nk98510n"; depends=[rJava XML]; }; hkclustering = derive2 { name="hkclustering"; version="1.0.1"; sha256="19syq06y5dl0mcwyaxr7w1hj8ffp5s140j72djcz0lljhskzmp6f"; depends=[cluster]; }; hkdatasets = derive2 { name="hkdatasets"; version="1.0.0"; sha256="1a594fgwc5bvimwp5m2zpb6pjy4iavcylxdmsq3hrnh9ll5g5582"; depends=[fst]; }; + hkevp = derive2 { name="hkevp"; version="1.1.5"; sha256="1a3wqafgv9rn10zkg27bgill33zhv76infpp4j84hsqmgiix0gfl"; depends=[Rcpp RcppArmadillo]; }; hkex_api = derive2 { name="hkex.api"; version="0.1"; sha256="0hqwihlrppchpaz2yaq92gf779yi5k8n7sxy1kbpjxs2qc18xvj2"; depends=[httr RCurl XML]; }; hlaR = derive2 { name="hlaR"; version="1.0.0"; sha256="0l0vch3sliyhm9pcz3x488bsq513c1iv2p55fg71141cr5k71pal"; depends=[devtools dplyr janitor purrr readr reshape2 schoolmath stringr tibble tidyr tidyselect tidyverse]; }; hlidacr = derive2 { name="hlidacr"; version="0.2.0"; sha256="02l86bvb4w8wdq9mk9zh5wkf5i5y5jlgld0ciz851p5ra70c395p"; depends=[curl glue httr jsonlite purrr stringr urltools usethis]; }; @@ -10883,9 +11027,9 @@ in with self; { hoa = derive2 { name="hoa"; version="2.1.4.1"; sha256="152vz6cddphmxvm7vi6f3b7jjpib0nsb6qv2k1wrmfrpvv3hgsxx"; depends=[statmod survival]; }; hoardeR = derive2 { name="hoardeR"; version="0.9.4-2"; sha256="1jdxfalmi4p7gwb7jndxbzbklv1fk0c57shnl4jz27s81lndg437"; depends=[bamsignals Biostrings data_table GenomicRanges GenomicTools_fileHandler httr IRanges KernSmooth knitr MASS R_utils RCurl rmarkdown Rsamtools S4Vectors seqinr stringr XML]; }; hoardr = derive2 { name="hoardr"; version="0.5.3"; sha256="0z34hgiwlgaljrfg0clmzx3fws1pdqq2hlg54awpvphz1qsx3r5r"; depends=[digest R6 rappdirs]; }; - hockeystick = derive2 { name="hockeystick"; version="0.7.2"; sha256="1zgqfl7n4whndbl6r00dy8xna1f2habfq0cly6mpka3w7qlcph1g"; depends=[dplyr ggplot2 lubridate patchwork RColorBrewer readr rvest scales tibble tidyr treemapify]; }; + hockeystick = derive2 { name="hockeystick"; version="0.7.3"; sha256="0yzkrhz2nl3jdrj3dy5clhhm0pjxdqil59dwpq49cl46yq8b6lrb"; depends=[dplyr ggplot2 lubridate patchwork RColorBrewer readr rvest scales tibble tidyr treemapify]; }; holdem = derive2 { name="holdem"; version="1.2"; sha256="0mcb4civ4p7apm7kfl88apvb4yznsmn4hggfggmjhs046g6bi2p7"; depends=[]; }; - holiglm = derive2 { name="holiglm"; version="0.2.1"; sha256="0q9q0ngbp24601jmicrhrqg3szb4g92d5kv37907kdjv1zc9rrkl"; depends=[checkmate MASS ROI ROI_plugin_ecos slam SuppDists]; }; + holiglm = derive2 { name="holiglm"; version="0.2.5"; sha256="0swn1l6avz2lh1cswqzsaxcczxqxxsh6hc15vhg89abcj8ipjx0g"; depends=[checkmate MASS ROI ROI_plugin_ecos slam SuppDists]; }; holland = derive2 { name="holland"; version="0.1.2-1"; sha256="0f5nr17rmx1m3g4aw6c1f82xdj2ll5nr8slm8ha80cg2i6a90v10"; depends=[MplusAutomation mvtnorm]; }; holodeck = derive2 { name="holodeck"; version="0.2.1"; sha256="1iazi5is41ap58vq56jgz88id0i6ppz55y9gx77a5navrrn0db4l"; depends=[assertthat dplyr MASS purrr rlang tibble]; }; homals = derive2 { name="homals"; version="1.0-10"; sha256="0kjcy3nv28jrir6a4pf8y82908p5snx8wha8h9lip4y436n1f4iw"; depends=[ape scatterplot3d]; }; @@ -10911,10 +11055,10 @@ in with self; { howler = derive2 { name="howler"; version="0.2.1"; sha256="00l1952hf2ngypg67y88rgn0xiicsjsyl6xf8r9r65ar9k0fl3yb"; depends=[htmlwidgets shiny]; }; howmany = derive2 { name="howmany"; version="0.3-1"; sha256="045ck8qahfg2swbgyf7dpl32ryq1m4sbalhr7m5qdgpm62vz8h7f"; depends=[]; }; howzatR = derive2 { name="howzatR"; version="1.0.1"; sha256="00mv9qkn4ndp74jwqkjwqmy7j8ywhpl4ycg81yw3xlabbnqb292j"; depends=[magrittr rlang]; }; - hpa = derive2 { name="hpa"; version="1.3.0"; sha256="0vhpvvzwxbqv4qm9489rxs50pz0jcpd5dqpg5wi96i9npcymmqcb"; depends=[Rcpp RcppArmadillo RcppParallel]; }; + hpa = derive2 { name="hpa"; version="1.3.1"; sha256="18jjn02a34apd0iyq9h5ziqxqb0pcphprn9k8nnqyvjip8d6v3fz"; depends=[Rcpp RcppArmadillo RcppParallel]; }; hpackedbubble = derive2 { name="hpackedbubble"; version="0.1.0"; sha256="1br7q4958f1zgvisglsaf41nz2ahnqi3bzazvlfnmk3nq03cb1ri"; depends=[htmlwidgets]; }; hpcwld = derive2 { name="hpcwld"; version="0.6-5"; sha256="1w7jpfnaqm9qhr52ixyihzwqklhf2pccshhpvf57pra3vc6cwv2l"; depends=[]; }; - hpfilter = derive2 { name="hpfilter"; version="1.0.1"; sha256="1nld9j0p6lnmzpn4njrwr94b9k8va0bgqg3wpb81y7x324q6ll5r"; depends=[Matrix]; }; + hpfilter = derive2 { name="hpfilter"; version="1.0.2"; sha256="1w1asqa4dszijwdmgdzx4ahl5bl34l0psczwvcal4kdkawy5kia2"; depends=[Matrix]; }; hpiR = derive2 { name="hpiR"; version="0.3.2"; sha256="0gz9ngnjgys7hzijsma2iyywwiv7vjar5gls28ds11wq8pmsv96n"; depends=[dplyr forecast ggplot2 gridExtra imputeTS lubridate magrittr MASS pdp plyr purrr ranger rlang robustbase zoo]; }; hpoPlot = derive2 { name="hpoPlot"; version="2.4"; sha256="176bf93gjwbi2z7nz81w4aycwax6f7jxvs3236zrmf0f0f4m7bkc"; depends=[functional magrittr Rgraphviz]; }; hqmisc = derive2 { name="hqmisc"; version="0.2-1"; sha256="10n5p5n9nw713ihz1mfm5d375msf29x68c3gk5l5slpzfk8cfh2n"; depends=[]; }; @@ -10927,12 +11071,14 @@ in with self; { hsdar = derive2 { name="hsdar"; version="1.0.4"; sha256="1z38qmy8jqzy52qwpbsr4xgdby2c73144bxrn0ywyqdgjz1b6g8j"; depends=[Boruta caret raster rgdal signal]; }; hse = derive2 { name="hse"; version="0.0-28"; sha256="14w09wm1kk7b4q8cl5cwjfqvzm2fb4ls8qjw6i0l54184fmw4dah"; depends=[]; }; hsem = derive2 { name="hsem"; version="1.0"; sha256="0dgp65isbfmw0q4sn36l5226sf6vrl7mvn7gn50xvgybh0l6y7vk"; depends=[boot Matrix mvtnorm numDeriv]; }; + hset = derive2 { name="hset"; version="0.1.1"; sha256="16mlicwj11d3gjai1499vdmjibbr2iayni5zz2n516ir2s1cr48v"; depends=[hash]; }; hsphase = derive2 { name="hsphase"; version="2.0.2"; sha256="1b62k9sc6604djy37anslvqjpbrj9wsc9mvnfbrnmhqf4g0nnpdq"; depends=[Rcpp RcppArmadillo snowfall]; }; hspm = derive2 { name="hspm"; version="1.1"; sha256="0ycdaji080xav2k87pcln7c26iy31bfjxzzccpyl57w3agcfwrcc"; depends=[Formula Matrix spdep sphet]; }; hsrecombi = derive2 { name="hsrecombi"; version="0.5.1"; sha256="0ghkn5nbf5r4dy3z3kk1pnhmd6ds0xnhvkpx1dz6jgi55hswg3x3"; depends=[curl data_table dplyr hsphase Matrix quadprog Rcpp rlist]; }; hsstan = derive2 { name="hsstan"; version="0.8.1"; sha256="0k7sqwx73zid68ji9l2hfihqdlk3rdpid81pp8g3fmi8dpvrzkms"; depends=[BH ggplot2 loo pROC Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; htdp = derive2 { name="htdp"; version="0.1.4"; sha256="0w579qp0p544xryb5r08m1nhqf7rmgv9q0lyx6my4av62l70ka5w"; depends=[Rcpp]; }; htestClust = derive2 { name="htestClust"; version="0.2.2"; sha256="081kxhc7sn070ys94pfzjf3gi2kkqwrqx2sclbgz4ihahqkbnhhr"; depends=[bootstrap MASS]; }; + htetree = derive2 { name="htetree"; version="0.1.16"; sha256="1q9fkmnr9nn68jdg87ls67rfncn12m46ck6svq0q17krf0ins9bc"; depends=[data_tree dplyr grf jsonlite Matching partykit Rcpp rpart rpart_plot shiny stringr]; }; htm2txt = derive2 { name="htm2txt"; version="2.2.2"; sha256="0f03vckq4wzd2nbzjfqgjf2pnjfdq875lhpim10k80smq32w8xx0"; depends=[]; }; htmcglm = derive2 { name="htmcglm"; version="0.0.1"; sha256="04fcjrr2pgzhcrp9jx70a99fsgvqf0724vj3p43kp8dlk95839h4"; depends=[doBy Matrix mcglm sjmisc stringr]; }; html2R = derive2 { name="html2R"; version="0.1.0"; sha256="1zdnwbqlpjh8r2xcl83da9pzh9cb8h908krnrs61vqhka7zb82ng"; depends=[glue shiny shinyAce shinyjqui shinythemes]; }; @@ -10950,11 +11096,11 @@ in with self; { httpgd = derive2 { name="httpgd"; version="1.3.1"; sha256="1vns7bqzlgsgl45l4ijd14xh615ndf0q12i6jaxll00ayymf7gvd"; depends=[BH cpp11 later systemfonts]; }; httping = derive2 { name="httping"; version="0.2.0"; sha256="0hdcf51yak8yagy4xj9cyck934lgmvpkd08jvlql33ir5mqvvv3i"; depends=[httpcode httr jsonlite magrittr pryr]; }; httpproblems = derive2 { name="httpproblems"; version="1.0.1"; sha256="0zd683xd9f9hz6dxm4bmic54jqjcabr23kwl6afsmdjwnrwwsn06"; depends=[]; }; - httptest = derive2 { name="httptest"; version="4.1.0"; sha256="1k5z55f5l7khi142787ignf57rfhxzf442rzbhpr04182g906xfx"; depends=[curl digest httr jsonlite testthat]; }; + httptest = derive2 { name="httptest"; version="4.2.0"; sha256="16rx2vwkypppl6a4f99yxp24q5wycz2i7ggn9dv1mlclvd88bmzc"; depends=[curl digest httr jsonlite testthat]; }; httptest2 = derive2 { name="httptest2"; version="0.1.0"; sha256="18i4lzqkmhd500rjfkh24drcqvw8ric3disddcl7bm3rddwn4bvh"; depends=[digest httr2 jsonlite rlang testthat]; }; - httpuv = derive2 { name="httpuv"; version="1.6.9"; sha256="0pfrhparpsgrrlgnwwdjb4npklrqka709hh7a2s76x7s49dz4xwd"; depends=[later promises R6 Rcpp]; }; - httr = derive2 { name="httr"; version="1.4.5"; sha256="0v3gyzgwv6v3rmpr5sfks8ygp1inmrddsiyamfcz039bi1zsqfzr"; depends=[curl jsonlite mime openssl R6]; }; - httr2 = derive2 { name="httr2"; version="0.2.2"; sha256="1gzjsw3w7c3rsp3gb9rdbfmmnmd2sq09s3wza49730gp84jvc6jx"; depends=[cli curl glue magrittr openssl R6 rappdirs rlang withr]; }; + httpuv = derive2 { name="httpuv"; version="1.6.11"; sha256="1xgf7q8ah9sbgbbjm9nwvry154g8i0gwfrn55npls9sihc59x9wb"; depends=[later promises R6 Rcpp]; }; + httr = derive2 { name="httr"; version="1.4.6"; sha256="1cipxhsss77n2psik755y1s7dkyqhrs0yjch8cmqswr3xz5qcvcd"; depends=[curl jsonlite mime openssl R6]; }; + httr2 = derive2 { name="httr2"; version="0.2.3"; sha256="0gabjyv2699p7fb4225jsr2kkbarx1w01kha8ipqzwhjjl13481m"; depends=[cli curl glue magrittr openssl R6 rappdirs rlang withr]; }; hubeau = derive2 { name="hubeau"; version="0.4.0"; sha256="1d98wpm1xxqbnzalhsipkfs23nvqv942wxlcj7gr6ma8dry46i82"; depends=[dplyr httr magrittr purrr tibble urltools]; }; hudr = derive2 { name="hudr"; version="1.2.0"; sha256="1kvqbgyhyr4lvzqvfsa1597px8ydqpacphnm902hchqv5qvbxgm4"; depends=[data_table httr janitor magrittr]; }; hues = derive2 { name="hues"; version="0.2.0"; sha256="062i7yc16nmnp15c1jh4xffw2lpklp36wkn1yvagh186ahnlgffx"; depends=[colorspace]; }; @@ -10963,7 +11109,7 @@ in with self; { humanFormat = derive2 { name="humanFormat"; version="1.2"; sha256="0yzax988qp5c8kvjnj9ggm5yl9sklqhs7b2b4w81np5kxhxy973y"; depends=[testthat]; }; humaniformat = derive2 { name="humaniformat"; version="0.6.0"; sha256="0vaynjzz57pk4y1liag9lpn9jkag2033a6bkn28zzm7ndg3344l6"; depends=[Rcpp]; }; humanize = derive2 { name="humanize"; version="0.2.0"; sha256="0hhhd640n77s8xaa2gbd9fckdk2yjg68gdb7wjy56a2khzqfssxr"; depends=[assertthat glue lubridate]; }; - humanleague = derive2 { name="humanleague"; version="2.1.11"; sha256="0i8lp04qrv3d7qdlmmglbcym2jgxylkg13qfycwfdkxkmbfqz42z"; depends=[Rcpp]; }; + humanleague = derive2 { name="humanleague"; version="2.2.0"; sha256="07zss9mkrpvbbh08a7wjd7k06w6mp34kwfcgsdfhzvzacpnmxyn3"; depends=[Rcpp]; }; humidity = derive2 { name="humidity"; version="0.1.5"; sha256="143pn8jjinlda76b94qh5zw2sfajw0ifcx774x6adr2il5a5wm99"; depends=[]; }; hunspell = derive2 { name="hunspell"; version="3.0.2"; sha256="0kij39rhsx7s4lfddy6745f1zjyi003srj14ckjpbhkcyxamk8jy"; depends=[digest Rcpp]; }; hurdlr = derive2 { name="hurdlr"; version="0.1"; sha256="1ryrqsxa07isxv2zx156bcn36d4yjvwpirb8jqcmqm97q7rmihmq"; depends=[]; }; @@ -10972,7 +11118,7 @@ in with self; { hutilscpp = derive2 { name="hutilscpp"; version="0.9.3"; sha256="0sh7s1y8wxwrbhdf8kz3x7myzk5jxv0h1yz1lrh345bvw1jdqb9i"; depends=[data_table hutils magrittr]; }; huxtable = derive2 { name="huxtable"; version="5.5.2"; sha256="1rpyqkdck6cmh2a7f5j71ypk2v9gzl3jf2b0z9jjlfrv1d1b8x7l"; depends=[assertthat commonmark fansi generics glue htmltools memoise R6 rlang stringi stringr tidyselect xml2]; }; hwde = derive2 { name="hwde"; version="0.67"; sha256="0wb2f9i5qi7w77ygh8bvydfpr7j5x8dyvnnhdkajaz0wdcpkyaqy"; depends=[]; }; - hwep = derive2 { name="hwep"; version="2.0.1"; sha256="1hnbf3m23ap1523aa6i1k9an0pwx9k1v06zvfgbq9wimvfr418wq"; depends=[BH bridgesampling doFuture doRNG foreach future iterators pracma Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tensr updog]; }; + hwep = derive2 { name="hwep"; version="2.0.2"; sha256="0cvy9s9kwc1jp4klgbjahidpk8gkvfa43vry8i0y77nvfys7x9v9"; depends=[BH bridgesampling doFuture doRNG foreach future iterators pracma Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tensr updog]; }; hwig = derive2 { name="hwig"; version="0.0.2"; sha256="06a42a38qsjwijbbr2c8dsd7hjm751g1s4sgcmzvvfi6xy7svl3k"; depends=[asnipe data_table spatsoc]; }; hwordcloud = derive2 { name="hwordcloud"; version="0.1.0"; sha256="0civbwv276lcwvfs4qzz14r8rk14kg1ml4zzhi3msnkkh29v70y2"; depends=[colourpicker htmlwidgets shiny wordcloud2]; }; hwriter = derive2 { name="hwriter"; version="1.3.2.1"; sha256="1wxnv8h9cs65m3z01dpnnkgn2cpwfsck70g1jz9nbkr7mdaa4bzd"; depends=[]; }; @@ -10981,12 +11127,14 @@ in with self; { hySpc_testthat = derive2 { name="hySpc.testthat"; version="0.2.1"; sha256="12za828sw2al3aa236ksmnwxpy2sqw8gl8b3p3vvrjk1l31l1qcm"; depends=[testthat]; }; hybridModels = derive2 { name="hybridModels"; version="0.3.7"; sha256="0fj3dvv7s1hlicvlb077pkhbj894brzgdxhp67jck9zpy2qymzxq"; depends=[doParallel doRNG foreach ggplot2 GillespieSSA reshape2 stringr]; }; hybridogram = derive2 { name="hybridogram"; version="0.3.2"; sha256="14p2gwmgcaf84aycdc2a51frw2pccrffsjk8n83gvj2ans8phrr9"; depends=[pheatmap]; }; + hybridts = derive2 { name="hybridts"; version="0.1.0"; sha256="1x96g0cjgn3vklczksxdgpd5ayl3rl63k0ig0h8vacm2nxn4c6js"; depends=[forecast Metrics nnfor WaveletArima]; }; hyd1d = derive2 { name="hyd1d"; version="0.4.4"; sha256="0m8v24kclma4k23jl0wxzzrvrigddv94pi6y0yf7lj69bn0sry81"; depends=[plotrix Rdpack RJSONIO]; }; hydflood = derive2 { name="hydflood"; version="0.5.3"; sha256="1sqlrcx75q6wjv1i5xr35lar7f2q2idc0v485hn14lchj6c43xzg"; depends=[hyd1d raster Rdpack sf terra]; }; hydra = derive2 { name="hydra"; version="0.1.0"; sha256="0r3r8cds4h15narawxhzkrvgnf00vlgrgqdgnmbzjyyb1dmry8wn"; depends=[]; }; hydraulics = derive2 { name="hydraulics"; version="0.6.1"; sha256="1yk1s9fnphzmkpx9pfawm72i07kdj099q6i6cry9p08bzvac80xk"; depends=[ggplot2 gtools purrr reshape2 tibble units]; }; hydroEvents = derive2 { name="hydroEvents"; version="0.11"; sha256="1w433lmzk6lr2lnqn1qcq13c980kpi0r881cdzm56n53s89zdh36"; depends=[]; }; hydroGOF = derive2 { name="hydroGOF"; version="0.4-0"; sha256="0fw8b66k7gdkdjxgmdpp3lk9d8p0wmlvhq2rkcvajjb5wd09f43a"; depends=[hydroTSM xts zoo]; }; + hydroMOPSO = derive2 { name="hydroMOPSO"; version="0.1-3"; sha256="14yvsxzlzpisn5hqyqcq1fmqsbj96pqcgyhnj414mj366x6w5qxp"; depends=[hydroTSM lhs randtoolbox xts zoo]; }; hydroPSO = derive2 { name="hydroPSO"; version="0.5-1"; sha256="16gdv19yqla80s9fjmvahfn21jv62zivirzs5ch4zm9db54g6bry"; depends=[data_table Hmisc hydroGOF hydroTSM lattice lhs scatterplot3d sp vioplot zoo]; }; hydroTSM = derive2 { name="hydroTSM"; version="0.6-0"; sha256="1msavd2k05apsky88zkk1l3c6y3v95fwhmr6xmwsap70bj25krsv"; depends=[automap e1071 gstat lattice maptools sp xts zoo]; }; hydroToolkit = derive2 { name="hydroToolkit"; version="0.1.0"; sha256="0bij4365hczvq17wj9hp0570v35m8ili11mp9dzfj3mvhhqrc9p4"; depends=[ggplot2 lubridate plotly readxl reshape2]; }; @@ -10994,7 +11142,7 @@ in with self; { hydropeak = derive2 { name="hydropeak"; version="0.1.2"; sha256="06x1qahavvhaqwdsjg65ixgc6migbm188v3w3vjng5xl2g2ybhqc"; depends=[]; }; hydroroute = derive2 { name="hydroroute"; version="0.1.2"; sha256="1pvdvfmjrxplcycszaig2xbwlk1acs6smci1cwmmhdh2xpaffami"; depends=[dplyr ggplot2 ggpmisc gridExtra hydropeak lubridate reshape2 scales]; }; hydrostats = derive2 { name="hydrostats"; version="0.2.9"; sha256="11ipfp5dnl336wbsw0nrrcd68hccp8igvlrr93rc3hrvif3slkim"; depends=[]; }; - hydrotoolbox = derive2 { name="hydrotoolbox"; version="1.1.0"; sha256="0fikhp7d0annjd3i4885m1in8fh9vnk4v7asip4804a0x9jj9zsz"; depends=[ggplot2 lubridate magrittr plotly Rcpp readxl reshape2 tibble zoo]; }; + hydrotoolbox = derive2 { name="hydrotoolbox"; version="1.1.2"; sha256="0m5crm8n8i3fv43am649cdyrbfcfbais8fwrg6c7zy81dbhmy9m9"; depends=[ggplot2 lubridate magrittr plotly Rcpp readxl reshape2 tibble zoo]; }; hyfo = derive2 { name="hyfo"; version="1.4.3"; sha256="012akh96qwafhgjba1gjwy0r14a6shcsk5b7n1hvw230s07zxd8r"; depends=[data_table ggplot2 lmom maps maptools MASS moments ncdf4 plyr reshape2 rgdal rgeos zoo]; }; hyper_fit = derive2 { name="hyper.fit"; version="1.1.1"; sha256="1xibiydfkhzsw0yqfc0xfzj4yz8xyxqlvnfpyxg33v5fwp9wap3v"; depends=[LaplacesDemon magicaxis MASS rgl]; }; hyper2 = derive2 { name="hyper2"; version="3.0-0"; sha256="09nq5vxih9f7731nrd5avpk6gw4wbh9rpq4bmq7373ikgc3qy3mf"; depends=[alabama calibrator cubature disordR magrittr mathjaxr partitions Rcpp Rdpack]; }; @@ -11005,8 +11153,9 @@ in with self; { hypergeo = derive2 { name="hypergeo"; version="1.2-13"; sha256="13jdiy216znwhr91iqnh03mvkmyscw439syb3h4i67dd78sphnvd"; depends=[contfrac deSolve elliptic]; }; hyperoverlap = derive2 { name="hyperoverlap"; version="1.1.1"; sha256="10kcphn5zl1pl70xg9bn947i9mbnjxk03p6y7xhdlv152cihffw0"; depends=[e1071 ggplot2 MASS matlib misc3d rgl]; }; hypersampleplan = derive2 { name="hypersampleplan"; version="0.1.1"; sha256="1sk3s1jm46ac4i7p433s3kyngj86kq2821zzhp30a3y8vi1j2psq"; depends=[]; }; - hypervolume = derive2 { name="hypervolume"; version="3.1.0"; sha256="1zyp7w2mc5icp928m3lgvil6lk5ck8877kxbgz0wiimsxm0sdgcp"; depends=[caret data_table doParallel dplyr e1071 fastcluster foreach geometry ggplot2 hitandrun ks maps MASS mvtnorm palmerpenguins pbapply pdist progress purrr raster Rcpp RcppArmadillo rgeos sp]; }; + hypervolume = derive2 { name="hypervolume"; version="3.1.1"; sha256="0zkax7mawbd8sjdlvcg5nad5ayzxmhkv0r1mq76na4yv0k98iqqx"; depends=[caret data_table doParallel dplyr e1071 fastcluster foreach geometry ggplot2 hitandrun ks maps MASS mvtnorm palmerpenguins pbapply pdist progress purrr raster Rcpp RcppArmadillo sp terra]; }; hypoRF = derive2 { name="hypoRF"; version="1.0.0"; sha256="1yyq1pjxm9p395wq4zfimvcagspl8vlk0kzpa92pr084q5f7jcyr"; depends=[ranger]; }; + hypothesis = derive2 { name="hypothesis"; version="1.0.0"; sha256="1s8c94fri033svgyhq9n9wx7cp4057xakv2c2vgf2dc58b3wb6hs"; depends=[glue htmltools htmlwidgets jsonlite magrittr purrr]; }; hypothesisr = derive2 { name="hypothesisr"; version="0.1.1"; sha256="0z06risagphhvqiw4lrxy52q6q2yr10w2yxsm8iz1wh9ik097pcv"; depends=[dplyr httr jsonlite]; }; hypr = derive2 { name="hypr"; version="0.2.3"; sha256="08aga0cpmlq550f0k9gzfxgnwg9k5n8d7jcmvzz4k8bq2i3cnysk"; depends=[cli magrittr MASS Matrix pracma]; }; hypsoLoop = derive2 { name="hypsoLoop"; version="0.2.0"; sha256="0kwxzw2r406li2pmby92a3jik4k3z1vdgs54m4q45a8r8vz3y1nn"; depends=[dplyr ggplot2 PolynomF sf sjPlot stars terra]; }; @@ -11034,7 +11183,7 @@ in with self; { iGasso = derive2 { name="iGasso"; version="1.4"; sha256="17xxqncl5xcphdqclghcazygcgibf8ijdf4kkl3ga11xf70sahj2"; depends=[CompQuadForm lattice]; }; iGraphMatch = derive2 { name="iGraphMatch"; version="2.0.1"; sha256="12b55l0wq1afsk09zdfjbrjmfhyia56b3x46f00hb3izmcyljl41"; depends=[clue igraph irlba Matrix Rcpp]; }; iIneq = derive2 { name="iIneq"; version="1.0.2"; sha256="15487majkslabw33dgqfx0jmbzzjhiy8z07bki5540d1wf6rmmnn"; depends=[doParallel foreach]; }; - iMRMC = derive2 { name="iMRMC"; version="1.2.4"; sha256="1cs5ghrd78h92bmws5z8adawjalvplri9wx2p9w7nq76h31wqhzw"; depends=[]; }; + iMRMC = derive2 { name="iMRMC"; version="1.2.5"; sha256="0a99arybhv5awlkrmzyv6m4cbdszw77qjw90ywwbddkccq1fq2h2"; depends=[]; }; iMediate = derive2 { name="iMediate"; version="0.5.5"; sha256="1lwhrzm4g2fcazh782g7p11v5pyx165ig1dzgkmdmjffpwk0w8b4"; depends=[MBESS mvtnorm plotly]; }; iNEXT = derive2 { name="iNEXT"; version="3.0.0"; sha256="1yfvadvdwgby047svj9sjwkm7hhrni2ifn6d2g5bv9djcvi22msh"; depends=[ggplot2 Rcpp reshape2]; }; iNZightMR = derive2 { name="iNZightMR"; version="2.2.7"; sha256="0c37bdpypl4kv3s4hxc7xzxiwa6fsbqxwhyi98hh3mfdj329p1m8"; depends=[]; }; @@ -11051,7 +11200,7 @@ in with self; { iSTATS = derive2 { name="iSTATS"; version="1.5"; sha256="14pd3k8w8hh7gl2iskax2pck6z96hdfrws5l69zdw02867bny404"; depends=[Cairo data_table ggplot2 gtools plotly rstudioapi shiny shinyBS shinyWidgets]; }; iSubGen = derive2 { name="iSubGen"; version="1.0.1"; sha256="0kfrgh4399x71mwa5j36nfszd65ybp61fwpc7qj3j9ypmgidwbaj"; depends=[cluster ConsensusClusterPlus keras philentropy tensorflow]; }; iTOP = derive2 { name="iTOP"; version="1.0.2"; sha256="1n6nlmmx2h63nksycgzr7qsnd1j6bxa629av7cfd3ihriim7dj47"; depends=[corpcor Matrix]; }; - iTensor = derive2 { name="iTensor"; version="0.99.0"; sha256="0skv1nx4ik4j8b29v4rhykpjs7ykgiyix79hfcy98ia1g8c8p559"; depends=[MASS rTensor]; }; + iTensor = derive2 { name="iTensor"; version="1.0.2"; sha256="09js2kiw1prrkn03srz4xas37mwbx85zkawfb93wgl292r31j2x9"; depends=[einsum geigen groupICA jointDiag MASS mgcv mixOmics rTensor]; }; iWISA = derive2 { name="iWISA"; version="1.0-2"; sha256="0jqi1kh7jlc04nb9d1w711q4i8j1vgwbxjls09z7853kv22wxfyz"; depends=[fda ggplot2 waveslim]; }; iWeigReg = derive2 { name="iWeigReg"; version="1.1"; sha256="077ymd271biyjhq2sbbbnla73anv8z8f953jh06m9abnx7rai9i6"; depends=[MASS trust]; }; iZID = derive2 { name="iZID"; version="0.0.1"; sha256="1jaqdh6i5xyfw4y2wd9qivzjklf4j2xxnya8ssn7rv5bz6misgcz"; depends=[doParallel extraDistr foreach rootSolve]; }; @@ -11079,8 +11228,9 @@ in with self; { ica = derive2 { name="ica"; version="1.0-3"; sha256="0rdqd3kz2cv3xvf6yz55bwhsg3k7j90d450i3azs2xkbn4q3aka7"; depends=[]; }; ical = derive2 { name="ical"; version="0.1.6"; sha256="1raanaagas1c8w66d8s045z5ip1i97xca4233d55jk6cazv0mb1w"; depends=[V8]; }; icardaFIGSr = derive2 { name="icardaFIGSr"; version="1.0.2"; sha256="1yysqkyr36388i8za8jhz0m1vdn3jv8kpb24pnhbxlwsq8r5x0jr"; depends=[caret doParallel dplyr foreach ggplot2 httr leaflet magrittr plotROC plyr raster reshape2 sp]; }; - icarus = derive2 { name="icarus"; version="0.3.1"; sha256="0ipbhzvwdn1cnzgdw33cwv901768srxfi588bimjx2ssl80mqn3a"; depends=[]; }; + icarus = derive2 { name="icarus"; version="0.3.2"; sha256="0nk4z1xw8ca7nkxvkbrblpp42b1pim3dskj9sczpdva0s8ksnq43"; depends=[]; }; iccCounts = derive2 { name="iccCounts"; version="1.1.1"; sha256="0h1bjnyl24i2y8z1pys4k89q2dy5cfd808bc7w54j1vyyap0k899"; depends=[Deriv dplyr ggplot2 glmmTMB gridExtra VGAM]; }; + iccTraj = derive2 { name="iccTraj"; version="1.0.2"; sha256="02fzqgg459y6d4f96fgvj0c5qvfpnp60d3gz7ddhf6zkk2rzhd0q"; depends=[doParallel dplyr foreach magic purrr sp spacetime trajectories]; }; iccbeta = derive2 { name="iccbeta"; version="1.2.0"; sha256="03ms1c8qpbgxabj3hh4n0gwcazw6cd0cvixck5rz8fkvj04xzjak"; depends=[lme4 Rcpp RcppArmadillo]; }; iccde = derive2 { name="iccde"; version="0.3.5"; sha256="1z7ra8s0sddjmbfb8flgp4kmz1ckgwshz8h2nnpbd3liav84b5xv"; depends=[]; }; icd_data = derive2 { name="icd.data"; version="1.0"; sha256="0cynr9327wfg88661w4hali48mb6ghyvlqgybsa38k9bbf57v8aa"; depends=[]; }; @@ -11092,43 +11242,43 @@ in with self; { icertool = derive2 { name="icertool"; version="0.0.3"; sha256="0wwkqcvjmv2z8a8j597c2fjjcka1jz932i94rmqxcy31brvbi2nl"; depends=[digest DT ggplot2 ggrepel purrr readxl shiny shinyhelper shinythemes tidyverse]; }; icesAdvice = derive2 { name="icesAdvice"; version="2.1.1"; sha256="1i47kz45m45nn23j0ydq8vahw97py2im80yxadlqbvldjcm98vdw"; depends=[]; }; icesConnect = derive2 { name="icesConnect"; version="1.0.0"; sha256="067jh43vp79pcw8bs1iarrd680x0ajc25vp91ckpjpzm22311wbr"; depends=[base64enc getPass httr jsonlite keyring whoami]; }; - icesDatras = derive2 { name="icesDatras"; version="1.4.0"; sha256="00vfd589y617lbjadmajjdq9c9d9w2c81pxqfzlsh50rz9y7qjsk"; depends=[]; }; + icesDatras = derive2 { name="icesDatras"; version="1.4.1"; sha256="0xhv95zs1bwxplvvdh2flx9v97zwvc8pvckwfjxcrff64vxxb0f1"; depends=[]; }; icesDatsu = derive2 { name="icesDatsu"; version="1.1.0"; sha256="0vprh8y6x28q33b6zx9qhq991q0aqn5rhccf44k8211n5dwa555k"; depends=[httr icesConnect jsonlite]; }; icesDatsuQC = derive2 { name="icesDatsuQC"; version="1.0.1"; sha256="0pspd702vg2k7fza9jvj7hdnpjlg4k41mwiq45k7bsr0cbksggsg"; depends=[icesDatsu sqldf]; }; - icesSAG = derive2 { name="icesSAG"; version="1.4.0"; sha256="0y6sajhl8bj2yzyrdnmlaq2kfnf3jzz99s66gg1gjpdhksn77dba"; depends=[httr icesVocab openssl png xml2]; }; + icesSAG = derive2 { name="icesSAG"; version="1.4.1"; sha256="0dsjsn3qx3k7grjgqsj120valzga7vjlj6jb8mfwmi85gmvlx329"; depends=[httr icesVocab openssl png xml2]; }; icesSD = derive2 { name="icesSD"; version="2.0.0"; sha256="1k0i79hh63bmsqw5m6ym2h3dydrjji57lkysp5n9x293lgh04pf2"; depends=[httr icesConnect]; }; icesTAF = derive2 { name="icesTAF"; version="4.2.0"; sha256="0xifza8s24gy09fibqdpkh0zc723jkx09ycx44gqffrx0ch8syds"; depends=[data_tree purrr roxygen2 TAF]; }; icesVMS = derive2 { name="icesVMS"; version="1.1.4"; sha256="0ppml34s4zz3vav08fjaj71bml8amaslw22zmib0scvw8k70jlir"; depends=[glue httr icesConnect icesVocab]; }; icesVocab = derive2 { name="icesVocab"; version="1.2.0"; sha256="0cd2w0w2m176mpfd3lzvxl88bcli1qrkjrli539i764nlyh0ipl0"; depends=[xml2]; }; - ichimoku = derive2 { name="ichimoku"; version="1.4.5"; sha256="1ky2rhy29xk7c5xgd7c201lklqrljfjgldmfsv4kv0ky6j25bwc7"; depends=[ggplot2 nanonext RcppSimdJson shiny xts zoo]; }; + ichimoku = derive2 { name="ichimoku"; version="1.4.6"; sha256="0xjiz0r0h57l2zvknpp8nf2zfp2xpwpg5gshcwa122ykn8l988q0"; depends=[ggplot2 nanonext RcppSimdJson shiny xts zoo]; }; icmm = derive2 { name="icmm"; version="1.2"; sha256="179q8w60g4yrv6wqgfmg47by1zc1mbhsdjgl7jq4wirqvwnxvgym"; depends=[EbayesThresh]; }; iconr = derive2 { name="iconr"; version="0.1.0"; sha256="17q7zj92yrj49slmrpwkxkjd0imrl9ildms9zj8qx7yc7dcv4c1s"; depends=[igraph magick rgdal]; }; icosa = derive2 { name="icosa"; version="0.11.0"; sha256="1z1xajdg7q5n3ijjy45klrh4q3i855afl9088f42dwidyban3w3h"; depends=[igraph Rcpp sf sp]; }; icpsrdata = derive2 { name="icpsrdata"; version="0.5.0"; sha256="024lda7619j8nxcj0d0myaqjsmyl9mqdyghd6imr29jxa2qhcm8y"; depends=[httr purrr rvest]; }; - icr = derive2 { name="icr"; version="0.6.2"; sha256="1xqvzn02x13d706irv83zycpxhm8yq1c34rh1nphddy5gri7gwjb"; depends=[Rcpp]; }; + icr = derive2 { name="icr"; version="0.6.3"; sha256="1g1gx0bbx6s8pqd5y0ckdi0r2kbg3lmr8djbaa7nj15jnf519zcx"; depends=[Rcpp]; }; icrf = derive2 { name="icrf"; version="2.0.2"; sha256="1apd9klng8dhd9z9nzqzpx8i84rvpwgyam9mzyh8jk6vd49cgjaf"; depends=[]; }; icsw = derive2 { name="icsw"; version="1.0.0"; sha256="0g7bcqs0rpbs1p202i9wjbl8hhy3r196zambm044xyf7kvsbzzf6"; depends=[]; }; idar = derive2 { name="idar"; version="1.5"; sha256="0433kyhwzaicb10jmb6b6b6lbfhd5g2zsdrg6v02lndb2j7dlk5c"; depends=[ape FD picante spatstat spatstat_explore spatstat_geom spatstat_random]; }; - idarps = derive2 { name="idarps"; version="0.0.2"; sha256="0vy9gr8wyixi4aaz1wkzigdg3h6m4sr314bj42chrgq9bz2n4whc"; depends=[]; }; + idarps = derive2 { name="idarps"; version="0.0.3"; sha256="15ckavi7j4afwyq3m0z2kpq2j93wxmjfnhn7lh6r4ymwmj7bbsvy"; depends=[]; }; idbr = derive2 { name="idbr"; version="1.0"; sha256="0silsd3ydrrg924klga8dascxjfmi2czw7sz3ap2j7gkgvxcfcpv"; depends=[countrycode dplyr httr jsonlite purrr rnaturalearthdata sf]; }; - idcnrba = derive2 { name="idcnrba"; version="0.1.0"; sha256="11lpa26ynfs046gsd656ckyq9wls7whbd0r8dzp3hnsi1cfh5k32"; depends=[base64enc dplyr DT flexdashboard haven htmlwidgets markdown miniUI nrba openxlsx readr rmarkdown rstudioapi shiny shinyjs srvyr survey tibble]; }; + idcnrba = derive2 { name="idcnrba"; version="0.2.0"; sha256="0ys753091akr435zfg9xlzqvd04rig03gbni8h0kasi23r10ajqa"; depends=[base64enc dplyr DT flexdashboard haven htmlwidgets markdown miniUI nrba openxlsx readr rmarkdown rstudioapi shiny shinyjs srvyr survey tibble]; }; ideamdb = derive2 { name="ideamdb"; version="0.0.9"; sha256="1f4dcv6c8ny7pik547f4840vhll26mzfcijnfsiqx31xhn0gsizd"; depends=[dplyr ggplot2 stringr tidyr]; }; idefix = derive2 { name="idefix"; version="1.0.3"; sha256="0jqjrg0qfzij5bx8r60wpjghsxnszdxgp58ynj10n7q9hc4fhsys"; depends=[dfidx dplyr MASS Rcpp RcppArmadillo Rdpack scales shiny tmvtnorm]; }; idem = derive2 { name="idem"; version="5.1"; sha256="1i5h0hg76rrxharlfv33kcbwmvkfyfk92wim93dvpkflnbwsmzfl"; depends=[BH mice Rcpp RcppEigen rstan sqldf StanHeaders survival]; }; idendr0 = derive2 { name="idendr0"; version="1.5.3"; sha256="11c12d166bp2i498d8y6ipg5jhz1xsdsrmnhjqnrqqzp9avvrsjp"; depends=[tkrplot]; }; ider = derive2 { name="ider"; version="0.1.1"; sha256="0cy1q9nmgxlrpysw6j04i0dzd14zwla8zv8dvxs0zxyrlqxwv2yh"; depends=[FNN glm2]; }; - idiogramFISH = derive2 { name="idiogramFISH"; version="2.0.10"; sha256="0zgqp0339g5m5d9fgim4s3bk7xdbhgnfhzna2nqri5q75ppspc00"; depends=[crayon dplyr plyr rlang scales tidyr]; }; + idiogramFISH = derive2 { name="idiogramFISH"; version="2.0.11"; sha256="09ay0dggxcrl2wi2cm4ym1ixr9scxajpfk0ndiz889rz3wdkwfdx"; depends=[crayon dplyr plyr rlang scales tidyr]; }; idm = derive2 { name="idm"; version="1.8.3"; sha256="04ac2yq983vk9v3iyd1p2sqxy8ppdr4p7bcvfbg2d9fanj4b1fa7"; depends=[animation ca corpcor ggplot2 ggrepel]; }; - idmTPreg = derive2 { name="idmTPreg"; version="1.1"; sha256="1329sjb4dnw3yiyg16whbj4l2v0kg8phg1x4ysvyp2kqkmw14yq6"; depends=[doParallel foreach survival]; }; + idmact = derive2 { name="idmact"; version="1.0.1"; sha256="1rkrmkmmwrqgj6d1ykjp4xrlb2823ks1pfibqg3pvvly2223wzcn"; depends=[rlang]; }; idmodelr = derive2 { name="idmodelr"; version="0.4.0"; sha256="11h7l1iv21jxmjwmg0klwiadvwpn1bj055y4a7fqfgsbbqraxlsj"; depends=[deSolve dplyr furrr future ggplot2 magrittr purrr rlang stringr tibble tidyr viridis]; }; - idopNetwork = derive2 { name="idopNetwork"; version="0.1.1"; sha256="0cqnand3yfw2pwanmradwqdd9dyrxw99iric023w12bva826aalz"; depends=[deSolve ggplot2 glmnet igraph mvtnorm orthopolynom patchwork reshape2 scales]; }; + idopNetwork = derive2 { name="idopNetwork"; version="0.1.2"; sha256="0gp9d5p7nqnsfy2n3lxhinmldriwyzq55ilmi5gq3vavf1h0iw24"; depends=[deSolve ggplot2 glmnet igraph mvtnorm orthopolynom patchwork reshape2 scales]; }; idr = derive2 { name="idr"; version="1.3"; sha256="1r6icxf0c0y9wvihwmkk5xqscr1qhacqk3w2076kjm2993f10fbb"; depends=[]; }; ids = derive2 { name="ids"; version="1.0.1"; sha256="1s6ga94gds5ydr9f8qbjfgfpg2dvbnkcrlybqlb33hk3c0c2l8dn"; depends=[openssl uuid]; }; idx2r = derive2 { name="idx2r"; version="1.0.0"; sha256="14d3rasnf8mghwzpg6h4larybgy7drrv0jh71x28qwry49acsqyh"; depends=[]; }; ie2misc = derive2 { name="ie2misc"; version="0.9.0"; sha256="0cawlkhyfrwwcnqcp1lc1wc4a42ax4r9g9nzbl88sfjxy3fyirkx"; depends=[assertthat checkmate data_table gWidgets2 lubridate mgsub openxlsx reader readxl stringi]; }; ie2miscdata = derive2 { name="ie2miscdata"; version="1.0.3"; sha256="19jjpgnrbrnwzh5g3whpimbv7m2fgkvx7p3z6vqa1kfxqy0bn8yh"; depends=[]; }; ieeeround = derive2 { name="ieeeround"; version="0.2-0"; sha256="0xaxrlalyn8w0w4fva8fd86306nvw3iyz44r0hvay3gsrmgn3fjh"; depends=[]; }; - iemisc = derive2 { name="iemisc"; version="1.0.2"; sha256="01iab55vd1c59zdpql54y1nrfccvsf330gpvshjrm4jdw2hp7glr"; depends=[anytime assertthat berryFunctions checkmate CHNOSZ data_table foreach fpCompare geosphere ggplot2 ggpubr gsubfn iemiscdata lubridate matlab matlab2r measurements mgsub pracma qdapRegex qdapTools ramify rivr roperators round sf signal sjmisc stringi units USA_state_boundaries zoo]; }; + iemisc = derive2 { name="iemisc"; version="1.0.3"; sha256="1x7jnw6rrnq2wpv2xbk72fgkwwpxx7gzn113swnc6d6fhh16i32x"; depends=[anytime assertthat berryFunctions checkmate CHNOSZ data_table foreach fpCompare geosphere ggplot2 ggpubr gsubfn iemiscdata lubridate matlab matlab2r measurements mgsub pracma qdapRegex ramify rivr roperators round sf signal sjmisc stringi units USA_state_boundaries zoo]; }; iemiscdata = derive2 { name="iemiscdata"; version="0.6.1"; sha256="0a9x90kisgmrka0frk9myb1qdq3nl092n78wrif31b42arifa8h9"; depends=[]; }; iemisctext = derive2 { name="iemisctext"; version="0.9.99"; sha256="02rr7sjjbrvfxwjl87f2ki245a8cw5fvx7z2z4rl8ixxlyxj9p5v"; depends=[]; }; ifCNVR = derive2 { name="ifCNVR"; version="0.1.0"; sha256="0qcmgd3vi413n4ipa6ybkr7a1kwxyr2al8cw4gfr8fp2av1sk4vc"; depends=[data_table isotree rmarkdown]; }; @@ -11139,17 +11289,16 @@ in with self; { igate = derive2 { name="igate"; version="0.3.3"; sha256="0b8dk976z0764cmxwcq6w2f3akv7iivivharinq029p90b600qza"; depends=[dplyr ggplot2 kableExtra knitr rmarkdown stringr xtable]; }; igcop = derive2 { name="igcop"; version="1.0.1"; sha256="0jl107mdwbldi319qflqjzy8vk02sr4nihky8jl5kcgr6x55qh6z"; depends=[Rcpp rlang vctrs]; }; iglu = derive2 { name="iglu"; version="3.4.2"; sha256="0ilfkmwmh3xshd67y45v9kvyd69xgf8wmxcw3hxi9zpsb0r4vmsb"; depends=[caTools dplyr ggplot2 ggpubr gridExtra gtable hms lubridate magrittr patchwork scales shiny tibble tidyr zoo]; }; - igoR = derive2 { name="igoR"; version="0.1.4"; sha256="00ngw366ir3dxz73v6sc8q6y9hd5wzf09jy4fmwb8hsv4nplnbdk"; depends=[]; }; - igraph = derive2 { name="igraph"; version="1.4.1"; sha256="1waxa15ng4lqr07s68br81ihdnxy5dnx8iygyzkwnyz8dbs5i8h8"; depends=[magrittr Matrix pkgconfig rlang]; }; + igoR = derive2 { name="igoR"; version="0.1.5"; sha256="1sqkxf6mp77hf15jg992krgpkw36mx9c2fqg4xzz88s47wwwg5wy"; depends=[]; }; + igraph = derive2 { name="igraph"; version="1.4.3"; sha256="08b0q5fb9wrnzq32izylq8fxyagibrng5yb80acsbmnfdkxb7g86"; depends=[cpp11 magrittr Matrix pkgconfig rlang]; }; igraphdata = derive2 { name="igraphdata"; version="1.0.1"; sha256="19w5npa4b8c054v94xlr7nmhhg2fhq4m8jbds86skp8zvipl4rkl"; depends=[]; }; igraphinshiny = derive2 { name="igraphinshiny"; version="0.1"; sha256="1ww5s4jfihzcx4k35lbhzsf54z720xh7b2p5alzk843m6rx77986"; depends=[igraph shiny]; }; igraphtosonia = derive2 { name="igraphtosonia"; version="1.0"; sha256="0vy9jnpjp68l8s0hi1l57j9p41c543h3iqv16pwl550f38zqp8j6"; depends=[igraph]; }; igrf = derive2 { name="igrf"; version="1.0"; sha256="1287mx1fpbq9y8jbyb43hlignkqg313rn3kc52pm6b2n77ipkrc6"; depends=[]; }; ihclust = derive2 { name="ihclust"; version="0.1.0"; sha256="049jlx8bspl1md06zyh3m7fr666cymmcwarsjrkr8pdd7vlg918j"; depends=[doParallel factoextra foreach ggplot2]; }; - iheatmapr = derive2 { name="iheatmapr"; version="0.5.1"; sha256="1pwkwh7ljlpr6zyz6j8knpz3iw60xzkw8amc98x4pc2mw148jvzx"; depends=[fastcluster ggdendro htmlwidgets jsonlite knitr magrittr RColorBrewer scales]; }; iheiddown = derive2 { name="iheiddown"; version="0.9.7"; sha256="1h7cb52wk0z5na543v78vjj2xh77kj3nwgl5vgqnf5186mrknh5v"; depends=[bib2df bookdown crayon dplyr fs gender ggplot2 pagedown pdftools readr rlang rmarkdown rstudioapi servr stringr tibble tidytext usethis xaringan]; }; ihpdr = derive2 { name="ihpdr"; version="1.2.1"; sha256="1qa9ndb5aqbmlqbl0ivh10ddah2rbhsc6928dml20fjgz7lggdww"; depends=[curl dplyr httr lubridate magrittr purrr readxl rlang rvest tidyr xml2]; }; - ijtiff = derive2 { name="ijtiff"; version="2.3.0"; sha256="1nf7d5qzsfm4l71simj7jmy742ll8drm2ygmnjwaxifyb9kgbr0c"; depends=[checkmate cli dplyr fs magrittr purrr readr rlang strex stringr withr zeallot]; }; + ijtiff = derive2 { name="ijtiff"; version="2.3.1"; sha256="1vc8y88ryn0xy67835w9zkknqqdwh5hfrbm193v7dm56yxm0nbf7"; depends=[checkmate cli dplyr fs magrittr purrr readr rlang strex stringr withr zeallot]; }; imabc = derive2 { name="imabc"; version="1.0.0"; sha256="1p420jlvqqcqdjqp7y4mcjkzimw3qiygph5yrvmm75znax3fkg4z"; depends=[data_table foreach lhs MASS truncnorm]; }; image_CannyEdges = derive2 { name="image.CannyEdges"; version="0.1.0"; sha256="0c8pvk91xyys6d2i03yy88kylb3jli5jkpq2s069n7p0yl3z7rr1"; depends=[Rcpp]; }; image_ContourDetector = derive2 { name="image.ContourDetector"; version="0.1.1"; sha256="0h9nq6k99rfmldw1c00k2anlpbjbpm26pp1d7jg2wz334dvlvlij"; depends=[Rcpp sp]; }; @@ -11165,13 +11314,14 @@ in with self; { imageData = derive2 { name="imageData"; version="0.1-61"; sha256="0bavyd8njfjd0l8dcsm6gklgc81kykl275w2gpvb5cxrhb9yp32n"; depends=[dae GGally ggplot2 Hmisc RColorBrewer readxl reshape]; }; imagefluency = derive2 { name="imagefluency"; version="0.2.4"; sha256="1kssg6lj29f7c2isnzw98crygpj761q0qp38i7zs8008cwbch4cy"; depends=[magick OpenImageR pracma R_utils readbitmap]; }; imagefx = derive2 { name="imagefx"; version="0.4.1"; sha256="1mxd33y8zbq8kig6m6xihb5w8wrjppgmpyjspvaxjwk7si9a09k1"; depends=[moments signal]; }; - imager = derive2 { name="imager"; version="0.42.19"; sha256="1qp1190cb7pssl22vakd8z8zvj6mmhrn7jk6wkjyrv28lv5vqyhq"; depends=[downloader igraph jpeg magrittr png purrr Rcpp readbitmap stringr]; }; + imager = derive2 { name="imager"; version="0.45.2"; sha256="0mmzp55j1svlaa0lfmmaz8hijlkbk0wkv2craxhc6gyx0g5qp129"; depends=[downloader igraph jpeg magrittr png purrr Rcpp readbitmap stringr]; }; imagerExtra = derive2 { name="imagerExtra"; version="1.3.2"; sha256="1f6mxfn7am4ph9acbbx53r4bk4vsm73p7arh8rvrsic9pgma3gqf"; depends=[fftwtools imager magrittr Rcpp]; }; imageseg = derive2 { name="imageseg"; version="0.5.0"; sha256="1ps303zcqmiy5jv65z1c1lyzbjdcb2akvy2rmcwbms8j7a1y1shg"; depends=[doParallel dplyr foreach keras magick magrittr purrr tibble]; }; imageviewer = derive2 { name="imageviewer"; version="0.1.0"; sha256="1rsrwy5v0gnsmbay1zqijhvll2l1bs844m52w65588j9nlx4fci9"; depends=[htmlwidgets]; }; imaginator = derive2 { name="imaginator"; version="1.0.0"; sha256="0wjgfsp7dhy8q7rai4bvikmw1y3iancnqdnqlhbi7a563s4mkpkr"; depends=[assertthat checkmate distributions3 dplyr lubridate magrittr rlang stringi tibble]; }; - imagine = derive2 { name="imagine"; version="1.5.4"; sha256="0bbkxhwicjy0h24v93h8cvi17ipy82kb4zwkm7pyg8q48bqssdp0"; depends=[Rcpp]; }; + imagine = derive2 { name="imagine"; version="2.0.0"; sha256="0dwq7gb068wd87fclca3hmdfr50bxf39va7dp1ky1i6qhk8w8g2l"; depends=[Rcpp RcppArmadillo]; }; imbalance = derive2 { name="imbalance"; version="1.0.2.1"; sha256="14f7p3x8818b1asfynp3w4sxdacsd14dzs7r166s1jdadwwfwi1s"; depends=[bnlearn C50 FNN ggplot2 KernelKnn mvtnorm Rcpp RcppArmadillo smotefamily]; }; + imbalanceDatRel = derive2 { name="imbalanceDatRel"; version="0.1.5"; sha256="017z434pshsc2v8w1nlrvlf6dswdjk060flrn951n59vdzvl5rhj"; depends=[RANN rcccd Rfast SMOTEWB]; }; imbibe = derive2 { name="imbibe"; version="0.1.1"; sha256="03vaz5vippnmbgs2l4gxpmsnrkxjw7d156ng13r07zicq43g9gwp"; depends=[magrittr Rcpp RNifti]; }; imcExperiment = derive2 { name="imcExperiment"; version="0.99.0"; sha256="0fagasb94q7gxx49c7n4p2cb9j3n5qnfx86s7nvz4naicy96qbyr"; depends=[S4Vectors SingleCellExperiment spatstat_geom SummarizedExperiment]; }; imdbapi = derive2 { name="imdbapi"; version="0.1.0"; sha256="11v7c0s7qqf02b186md5lhgkgmywkn8lmmanlz3gfcxca26g047y"; depends=[dplyr httr stringr]; }; @@ -11215,7 +11365,7 @@ in with self; { inTrees = derive2 { name="inTrees"; version="1.3"; sha256="1afyjh2winb591am1cawchkysyslzv01nwyihvjb7n844pqr5s2j"; depends=[arules data_table gbm RRF xgboost xtable]; }; inaparc = derive2 { name="inaparc"; version="1.2.0"; sha256="0y3m2g5y12wj4af1wiqyi7nlb11avissd59g202rha0wqwzd8q3f"; depends=[kpeaks lhs]; }; inbreedR = derive2 { name="inbreedR"; version="0.3.3"; sha256="0g7h4jgmnbpm4c6pb6fkmpzdg4adkc0k72444jpxbvyddq3hqh24"; depends=[data_table]; }; - incR = derive2 { name="incR"; version="1.1.0"; sha256="0q41bs7pf6hqyfwvcwc2sxq44jq95qq3qsddz53f8gphwjsyf1v7"; depends=[dplyr ggplot2 lubridate maptools rgeos]; }; + incR = derive2 { name="incR"; version="2.1.0"; sha256="0mis4hwd9mw7ji322yqidiz8d9qsb4jkpndfdskxrrmpfpha9r91"; depends=[ggplot2 lubridate suncalc]; }; inca = derive2 { name="inca"; version="0.0.4"; sha256="1r3niibd6pja59am8in9gpyvxi2g5bh8bqqhdixzwaj3xzyyipii"; depends=[Matrix Rcpp RcppArmadillo]; }; incase = derive2 { name="incase"; version="0.3.1"; sha256="01x1alrk3pp4zi7r4nxnn9y16129ggmiqjys5sfhlybs505yq5vw"; depends=[backports magrittr plu rlang]; }; incgraph = derive2 { name="incgraph"; version="1.0.1"; sha256="0zjvxk2krdlm5bcr0m80nxy46f69a1xadfjw5sjw249b28wdclml"; depends=[BH dplyr orca purrr Rcpp testthat tibble]; }; @@ -11229,7 +11379,7 @@ in with self; { independence = derive2 { name="independence"; version="1.0.1"; sha256="0yln5wd8m5fgh4h7k80vq22byf06k4d6574zxyqcig63hls7v568"; depends=[Rcpp]; }; independenceWeights = derive2 { name="independenceWeights"; version="0.0.1"; sha256="07650hc93dxfx0sl2mdjzg2r84117q7ylbb9yfm3lh7dlb014lxp"; depends=[locfit osqp]; }; index0 = derive2 { name="index0"; version="0.0.1"; sha256="1kdjc86312a9x800h0i7z0z7bwbxyrqds8wnrm15aljkvk83xwxl"; depends=[]; }; - indicspecies = derive2 { name="indicspecies"; version="1.7.12"; sha256="0ihlbbqygjpp6ynpk047f6n041fghhcyy9xkkgvrciqqvnif17vq"; depends=[permute]; }; + indicspecies = derive2 { name="indicspecies"; version="1.7.13"; sha256="12hcy5hadwf4gi9vs649r2msb35a0i9prwsrn7ng5fb4p6vhcq0c"; depends=[permute]; }; indiedown = derive2 { name="indiedown"; version="0.1.1"; sha256="0r46r6s0asd182gs5map4wilhfb7jhgrcinnl36ib3q1xxn06457"; depends=[cli fs gfonts rlang withr]; }; indirect = derive2 { name="indirect"; version="0.2.1"; sha256="1iaks18xcxqr2afzbzgxj4jr77p6gw2zmgb1398cgqkgdwb1yj13"; depends=[gplots MASS]; }; industRial = derive2 { name="industRial"; version="0.1.0"; sha256="0zgnykbr71pi3nii178ijmzd8ijwf3g8y8yz6g3jy4c0by7w676s"; depends=[dplyr ggplot2 lattice magrittr rlang SixSigma tidyr]; }; @@ -11246,8 +11396,8 @@ in with self; { influence_ME = derive2 { name="influence.ME"; version="0.9-9"; sha256="0f6d2hvs9qllyfpsp2cgh7w8yjxafclbk47n8av7j9zpp7s5yg9v"; depends=[lattice lme4 Matrix]; }; influence_SEM = derive2 { name="influence.SEM"; version="2.3"; sha256="0z83rvlri9g30291p0wv4s0jhiy6445lcrqrd4n1crach9672yzy"; depends=[lavaan]; }; influenceAUC = derive2 { name="influenceAUC"; version="0.1.2"; sha256="0pscwfxs2y780lzd5sxldnnkzzs2lsjdwz71z44kn7884wqmikpm"; depends=[dplyr geigen ggplot2 ggrepel ROCR]; }; - influenceR = derive2 { name="influenceR"; version="0.1.0.1"; sha256="0rj7rm236vn3v8302nwl12s0kvpv6xpdbm3q3gxk7vgwfl8nzi33"; depends=[igraph Matrix]; }; - influential = derive2 { name="influential"; version="2.2.6"; sha256="17w21kdc1nf5lrrgs8g6l90w8rxfi5xaz5c91v6sh769mfia7dq1"; depends=[coop data_table ggplot2 igraph janitor ranger]; }; + influenceR = derive2 { name="influenceR"; version="0.1.5"; sha256="137m40xs9xfqcm88gi7w86b310rysf3a973wp7x3543n1y1f8r41"; depends=[igraph Matrix]; }; + influential = derive2 { name="influential"; version="2.2.7"; sha256="19ha1hcirvxpp5nfmgk86jhlq0zprb81rzghijcjb8vpz80ldcdm"; depends=[coop data_table doParallel foreach ggplot2 igraph janitor ranger]; }; influxdbclient = derive2 { name="influxdbclient"; version="0.1.2"; sha256="0zyb6ycyw03kwg8f27vhy14i0bh58j040bjbi9vm1m692hcvcqcd"; depends=[bit64 httr jsonlite nanotime plyr R6]; }; influxdbr = derive2 { name="influxdbr"; version="0.14.2"; sha256="03dzw86mvbc8w38q9skjki1z17vc04k9q8dx7sd3xg6xbr10f9d9"; depends=[dplyr httr jsonlite magrittr purrr rlang tibble tidyr xts zoo]; }; infoDecompuTE = derive2 { name="infoDecompuTE"; version="0.6.2"; sha256="0r1capiv4zr31dsy0sqly9zb00i86zq2ihbgsmb5g4cy0f04xlqz"; depends=[MASS]; }; @@ -11263,7 +11413,7 @@ in with self; { inline = derive2 { name="inline"; version="0.3.19"; sha256="1mcr9hgq6kkq03n7pkcccxa7vg8jma0q7lfxc5vvkc6snydk1s8f"; depends=[]; }; inlinedocs = derive2 { name="inlinedocs"; version="2019.12.5"; sha256="11d8cnrzgq95w7hn234rcwrr1mmrv63f69807pnzxizxbgnp7wz3"; depends=[]; }; inlpubs = derive2 { name="inlpubs"; version="1.0.4"; sha256="0yzi5x4kyjnb6mjfknqs6415ryf44r55qifh9d2s9nzbhk5y11mg"; depends=[checkmate tm]; }; - innsight = derive2 { name="innsight"; version="0.1.1"; sha256="0snnr0mqs0qhng4d73dqn2l6zzw11pdyipszxf1mhxh7mmssnn22"; depends=[checkmate ggplot2 R6 torch]; }; + innsight = derive2 { name="innsight"; version="0.2.0"; sha256="0ckhxicgvvrwzsm1x396xp2fj6g7v2m2ga4gzvqrw4my10w4y3di"; depends=[checkmate cli ggplot2 R6 torch]; }; inops = derive2 { name="inops"; version="0.0.1"; sha256="1y402a9r542hpwd1nfdc07mbgnf9alpnykl9di1v8fy0qly8s0an"; depends=[]; }; inpdfr = derive2 { name="inpdfr"; version="0.1.11"; sha256="1wnz73ggc7xcgynvdlvgz26qkfjmxxy0xg8gkf1far5346g4qd9y"; depends=[ca cluster entropart metacom R_devices RColorBrewer SnowballC stringi tm wordcloud]; }; inplace = derive2 { name="inplace"; version="0.1.2"; sha256="06jb8xzjqywdww8j2i59c8663dfbrhnvj0lh3xm73j39sig6vh7l"; depends=[Rcpp]; }; @@ -11271,7 +11421,7 @@ in with self; { insect = derive2 { name="insect"; version="1.4.2"; sha256="0pbac9il1jrhii0hxvvqjc3phyr2iamxwzanxx5mrkyjh2wsl3jh"; depends=[ape aphid kmer openssl phylogram RANN seqinr xml2]; }; insectDisease = derive2 { name="insectDisease"; version="1.2.2"; sha256="1ncj5fgmx19caf8m2p3ij5iamk941m9y725gs0nqpa9m6zfnzgf8"; depends=[plyr taxize]; }; insee = derive2 { name="insee"; version="1.1.5"; sha256="1f6y19dysm0mh3fkrwnqcgi5j1lzy08m3ij3wrx26q2vgwv5lkfg"; depends=[crayon dplyr httr openssl purrr rappdirs rlang stringr tibble tidyselect xml2]; }; - insight = derive2 { name="insight"; version="0.19.1"; sha256="1swq3if5frabn62zd7l756iw7h6cmlw1siyl5wvilsy68jb64hhh"; depends=[]; }; + insight = derive2 { name="insight"; version="0.19.2"; sha256="0xi9qsaxdsf2g62izh28h4kn5ada6w03znrn1zq9zdxhi5vwbavp"; depends=[]; }; inspectdf = derive2 { name="inspectdf"; version="0.0.12"; sha256="1k9dszjfpvpc10qr9nbw5r55mdwslgblhlrgnqjnwx9i89j03mlk"; depends=[dplyr ggfittext ggplot2 magrittr progress Rcpp rlang tibble tidyr]; }; inspector = derive2 { name="inspector"; version="1.0.3"; sha256="16gc98af6wmwf32fz8zml5v17g5lkiybzyzsqgphx0k19hrbc6kr"; depends=[Rdpack]; }; instaR = derive2 { name="instaR"; version="0.2.4"; sha256="0c4m471ragkpksr0h21cdgnjxcknf01xqz543dahxgzjg9ncjwhg"; depends=[httr jsonlite]; }; @@ -11281,7 +11431,7 @@ in with self; { insuranceData = derive2 { name="insuranceData"; version="1.0"; sha256="0wryh8i1v3bnpbqn6d6dpxr9bwwl6mnh5cb5igz0yanh4m1rx96w"; depends=[]; }; insurancerating = derive2 { name="insurancerating"; version="0.7.2"; sha256="0yllp7r1jmv09py3v8blir7nc3vpd8y5a8b3r8k5ncyx7k56nbwh"; depends=[ciTools classInt colorspace data_table DHARMa dplyr evtree fitdistrplus ggplot2 insight lubridate magrittr mgcv patchwork scales stringr]; }; intRegGOF = derive2 { name="intRegGOF"; version="0.85-5"; sha256="0xjq8vdlgqlzrvp752gd4qfrpnpapx7k6xzfsvfril8ngvm9a162"; depends=[]; }; - intRinsic = derive2 { name="intRinsic"; version="0.2.2"; sha256="0slwys4vn8s6w46vc6phj74b97m4r9vkmidsp7292ns9h4ilf1qr"; depends=[dplyr FNN ggplot2 knitr latex2exp MCMCpack Rcpp RcppArmadillo reshape2 rlang salso]; }; + intRinsic = derive2 { name="intRinsic"; version="1.0.1"; sha256="0kx40w1228ppvvi3g54pw7552637azix809rpijqcfnps7p7kj1p"; depends=[dplyr FNN ggplot2 knitr latex2exp MCMCpack Rcpp RcppArmadillo reshape2 rlang salso]; }; intRvals = derive2 { name="intRvals"; version="1.0.1"; sha256="013n0qp12dqnnk931rvs6lql2r13z5j4jf27s4aqfyd80mnl5w7k"; depends=[lme4 plyr]; }; intSDM = derive2 { name="intSDM"; version="1.0.5"; sha256="098cq4sav84kckgdl8i9szkygnmiqbch4qfs90686wjkva5nk6my"; depends=[dplyr geodata ggplot2 inlabru maps PointedSDMs raster sp spocc terra]; }; intamap = derive2 { name="intamap"; version="1.5-6"; sha256="1d269rg1wf431v6p9blxspnnps8lyzcc8wid5qgy6hj3wrya0a37"; depends=[automap doParallel evd foreach gstat MASS MBA mvtnorm sf sp]; }; @@ -11292,7 +11442,7 @@ in with self; { intendo = derive2 { name="intendo"; version="0.1"; sha256="1qkgb0yrlq2k9cg934v5pj8bb6kla911v3z7sadd1p7m8a10kdyw"; depends=[]; }; intensegRid = derive2 { name="intensegRid"; version="0.1.2"; sha256="1dhk14rxy7c2pawcg89bhbnx30nzi5hppywmf41aa7f40x2m7wxs"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang tibble tidyr]; }; intensity_analysis = derive2 { name="intensity.analysis"; version="0.1.6"; sha256="1ydmn7njqk6i2667zaha8mvfndss4im39czadg1f3z6sndp2lsji"; depends=[diffeR ggplot2 raster reshape2 rgdal]; }; - intensitynet = derive2 { name="intensitynet"; version="1.3.1"; sha256="0g0lkbfyg0f104avr0y46caaa300yibzqlbhn32hl03sa0dqd6c3"; depends=[ggplot2 igraph intergraph Matrix sna spatstat_geom spdep viridis]; }; + intensitynet = derive2 { name="intensitynet"; version="1.4.0"; sha256="0rgm8rj95r269ww7snwv6czqdxabhzwxyaf3587scprhhn7pncy3"; depends=[ggplot2 igraph intergraph Matrix sna spatstat_geom spdep viridis]; }; interactionR = derive2 { name="interactionR"; version="0.1.6"; sha256="1k6fn0y69s8dq14yqqai4qm97cdyp7sfn8ni19xs2h8hwgmxdhf9"; depends=[car flextable msm officer]; }; interactionRCS = derive2 { name="interactionRCS"; version="0.1.0"; sha256="07yhcgp9jc0fd29drsvdcpg8hw3zafr3njkx4qa5qhp3jsn0m3pm"; depends=[boot mlbench msm pryr pspline rms survival]; }; interactionTest = derive2 { name="interactionTest"; version="1.2"; sha256="0ycr839l07xahakr4r2jvlmd0fcxfm4qi3g8agnyh24c2kwl3ck2"; depends=[]; }; @@ -11308,6 +11458,7 @@ in with self; { interlineaR = derive2 { name="interlineaR"; version="1.0"; sha256="0y1ym6iwly8sv94pdzwv2qy1g7z4hpqlrbcrpb1ds5a62a6axqj5"; depends=[reshape2 xml2]; }; interp = derive2 { name="interp"; version="1.1-4"; sha256="01jdwcv25khnma7i0zcynkr5sw0dzb2agqimhrpdg91jh4w5sysg"; depends=[deldir Rcpp RcppEigen]; }; interplot = derive2 { name="interplot"; version="0.2.3"; sha256="1qs0ni16rbjilkahn15yn9sil3ba4n935bxpdbpwlsjina504jqj"; depends=[abind arm dplyr ggplot2 interactionTest purrr]; }; + interpolation = derive2 { name="interpolation"; version="0.1.0"; sha256="12rxbpyi6hn2lijlxl3yaqp0fvxw3ipyk6x1hyl7dp3r8i5q4qy5"; depends=[BH Rcpp RcppCGAL]; }; interpret = derive2 { name="interpret"; version="0.1.33"; sha256="17619lyfbvkssls5l3ymlvq72b2162w0n9r7xa5n8wjnnx8mlipz"; depends=[]; }; interpretCI = derive2 { name="interpretCI"; version="0.1.1"; sha256="1jg2dpfrhb1kij2z0gq4sw1lrb4v2sky13dpfmdnaz2k5xqnih2s"; depends=[aplot dplyr english flextable ggbeeswarm ggplot2 moonBook officer patchwork purrr RColorBrewer rlang rmarkdown rstudioapi scales tidyr]; }; interpretR = derive2 { name="interpretR"; version="0.2.4"; sha256="0nfh3pyr7nn0r41xk0mfb4fs5rjkbh43lbw14x7pdmbgzpgsc22c"; depends=[AUC randomForest]; }; @@ -11318,15 +11469,18 @@ in with self; { intervcomp = derive2 { name="intervcomp"; version="0.1.2"; sha256="1l6x1fl84li6is3b92b96q3fbv0rpgqy2lvw9cbi2cq8nh9imnyx"; depends=[]; }; inti = derive2 { name="inti"; version="0.6.0"; sha256="13zqb4az77frxnj7sna95aj86q7ridqaa14shmlbvwm7aqr7iwn1"; depends=[agricolae dplyr DT emmeans FactoMineR ggplot2 lme4 purrr shiny stringi stringr tibble tidyr]; }; intkrige = derive2 { name="intkrige"; version="1.0.1"; sha256="1p3fn5nzn1iliy025187k590qrsw3z3d47p67gzwwd6h050yrl86"; depends=[gstat raster Rcpp RcppArmadillo Rdpack sp]; }; + intmap = derive2 { name="intmap"; version="1.0.0"; sha256="1fxq0jkahangv4pwsvnrr4iq2y6qp61l81b28yzwl74b0lmx6hbf"; depends=[BH maybe R6 Rcpp]; }; intmed = derive2 { name="intmed"; version="0.1.2"; sha256="0amcqzinj35yvb9nfy808bz098dqmnds13z335lgqm6sykriyjpl"; depends=[doParallel dplyr foreach MASS mice stringr tibble]; }; + intradayModel = derive2 { name="intradayModel"; version="0.0.1"; sha256="1rpcm6bix06lwkj7wndy3zarbxwm24x15vwwb2gfqj0527pvk0gl"; depends=[ggplot2 magrittr patchwork reshape2 scales xts zoo]; }; intrinsicDimension = derive2 { name="intrinsicDimension"; version="1.2.0"; sha256="0cka20ifxx9njnvp18bzhrvmh3cwjnxkc0a23qzi43dahc51ijbc"; depends=[yaImpute]; }; + intrinsicFRP = derive2 { name="intrinsicFRP"; version="0.1.0"; sha256="1pjf3xkbqph40xxj51ddln1fq53dvndbp9hk6hyy6kkikdw22gi5"; depends=[Rcpp RcppArmadillo]; }; intrval = derive2 { name="intrval"; version="0.1-2"; sha256="1fbgl2r359aml6cfz8x7h0381kxfx1dy0hr0c7012vr66f6c2lhi"; depends=[]; }; intsurv = derive2 { name="intsurv"; version="0.2.2"; sha256="02ds4gikrgg19knylg68ziani702dyhqc37fhf9j7awa1qxy2r9l"; depends=[Rcpp RcppArmadillo]; }; intsvy = derive2 { name="intsvy"; version="2.6"; sha256="014c8vsbf52xrsdjb39pl4lvcz05ns3k2fywh7m7cffnxbc5fwak"; depends=[dplyr foreign ggplot2 Hmisc memisc plyr reshape]; }; inum = derive2 { name="inum"; version="1.0-5"; sha256="1gbbsffbzxjrgi8yw21fl35fsbx7ns8hdrhja50byfqvnghbg5p6"; depends=[libcoin]; }; invGauss = derive2 { name="invGauss"; version="1.2"; sha256="0zpyn5cb0mv4095flvgsy5p34f03xkm13r4yqfy0gfqy92xm26fz"; depends=[optimx survival]; }; invLT = derive2 { name="invLT"; version="0.2.1"; sha256="0dcr2cclgzkvsw1lysmjrkwgahas96rjc328yc7a1a56pf62kw2v"; depends=[]; }; - invacost = derive2 { name="invacost"; version="1.1-4"; sha256="0nj1zzlj7n05ajp7c228cgs0vzlniam4d3x804ncy1wl3d920hc9"; depends=[dplyr earth ggplot2 lmtest mgcv quantreg robustbase sandwich scales]; }; + invacost = derive2 { name="invacost"; version="1.1-5"; sha256="0qh1illwkcr2hi9hcns08xw8xpqd9d9134mdznw91a5qisnl9wkk"; depends=[dplyr earth ggplot2 lmtest mgcv quantreg robustbase sandwich scales]; }; invctr = derive2 { name="invctr"; version="0.2.0"; sha256="1sywjw078rc6nqiz1j77sd7c15nbjjpwqqni3363zzw5c3hgrpx5"; depends=[plyr rlang]; }; inventorize = derive2 { name="inventorize"; version="1.1.1"; sha256="0pbm9iw4v6wqr4qs5g2nfkgiaq75qdfcdicazy94fwwfvx5xbgbv"; depends=[dplyr ggplot2 magrittr plotly plyr tidyr]; }; inverseRegex = derive2 { name="inverseRegex"; version="0.1.1"; sha256="1ca6adv602mh6fgkjy4qvmradki3wp44iak27i1k4cp3fi9cm986"; depends=[]; }; @@ -11342,11 +11496,12 @@ in with self; { iotables = derive2 { name="iotables"; version="0.9.1"; sha256="1xs6hfr1h8mpm2ksbrx7kjqi01rvgfczsnxmv70czwpsc3lbzrdf"; depends=[assertthat dplyr eurostat forcats glue kableExtra knitr lubridate magrittr plyr readxl rlang tibble tidyr tidyselect]; }; iotarelr = derive2 { name="iotarelr"; version="0.1.4"; sha256="0bs2m5528cq4lsq33cs77n16hpd72bcbv64axyw95jbk71s48zrx"; depends=[ggalluvial ggplot2 gridExtra Rcpp rlang]; }; iotools = derive2 { name="iotools"; version="0.3-2"; sha256="07q0z0kszm1xx5hfhisfliyrcsxd8dc5mx0a2bwwnv5l1xzmix17"; depends=[]; }; - ip2location = derive2 { name="ip2location"; version="8.1.2"; sha256="0yssfzzwx01kkhaa9mnlyqvg3w12vc5dc3cyxj22r31c3n0k6lj6"; depends=[ggplot2 jsonlite maps reticulate scales]; }; + ip2location = derive2 { name="ip2location"; version="8.1.3"; sha256="1nbqg4nnhxwcwi9kgbyjkikdwh8djglxkrw0lcqfvaqn4n7qf1i5"; depends=[ggplot2 jsonlite maps reticulate scales]; }; ip2proxy = derive2 { name="ip2proxy"; version="1.2.0"; sha256="0h0krm4sli400mmk8jw9jnxlp773barnyx3z66y45iqr3m23z6lx"; depends=[ggplot2 jsonlite maps reticulate scales]; }; ipADMIXTURE = derive2 { name="ipADMIXTURE"; version="0.1.0"; sha256="1fl7nyxg7gakjdggdc311wf037zaxwpqsw3ax7liq1pvw6flb9h7"; depends=[ape treemap]; }; ipa = derive2 { name="ipa"; version="0.1.0"; sha256="029vz7pb37vnqm7x6h53p0y7z0nx2s36yklyfn9sz21gknsi983j"; depends=[stringi]; }; ipaddress = derive2 { name="ipaddress"; version="1.0.1"; sha256="1b3w2iq3zbfmnch9wi26l0jra4784ykazimxdd4gkkqf972yk4vf"; depends=[AsioHeaders cli Rcpp rlang vctrs]; }; + ipbase = derive2 { name="ipbase"; version="0.1.1"; sha256="0adddq34pvgwf535sliy455y9mlk1qfjln8w9wjjjjlg8vi166bg"; depends=[httr jsonlite]; }; ipc = derive2 { name="ipc"; version="0.1.4"; sha256="07bl1yj1y0dd56zmqip73rvbzzciwi5lafvqfhz0zxlk6pzyqfpj"; depends=[R6 shiny txtq]; }; ipcwswitch = derive2 { name="ipcwswitch"; version="1.0.4"; sha256="12z16c8sv1nhdv70kwx1a0wh588znkv5y5r0s9kcws0n3rjhzh9p"; depends=[survival]; }; ipdw = derive2 { name="ipdw"; version="2.0-0"; sha256="0lgxassvdd8vc4fyc84rbwwgdis7h4p5psqxxyb7xznm3zdzxc7h"; depends=[gdistance raster sf]; }; @@ -11356,6 +11511,7 @@ in with self; { ipfr = derive2 { name="ipfr"; version="1.0.2"; sha256="0q44zw5g76qfqrqv6w2a8p905n4ljxab9jmyqk6fv9vs8j2kyivg"; depends=[dplyr ggplot2 magrittr mlr tidyr]; }; ipft = derive2 { name="ipft"; version="0.7.2"; sha256="0jifmkwac5yfl110200ljm3pas3321j068af9xqzqs0av20m8hps"; depends=[apcluster cluster dplyr ggplot2 Rcpp]; }; ipkg = derive2 { name="ipkg"; version="1.0.5"; sha256="0y1gqc61fqjai3vfsn0rdjd0r8g46ls2jvb97h6gfhdafgfxrq7f"; depends=[remotes]; }; + iplookupapi = derive2 { name="iplookupapi"; version="0.1.0"; sha256="1lkla7jz4jhpxb9bd1nzgr4ks5r6i0ng2dxidyv3072fxlpvih5p"; depends=[httr jsonlite]; }; iplots = derive2 { name="iplots"; version="1.1-8"; sha256="01s8a43s2spxgmp6px5dpd96p8f4sfp98nxmxk763hg2868rksx3"; depends=[png rJava]; }; ipmr = derive2 { name="ipmr"; version="0.0.7"; sha256="0zpw73bqv9gblyxaprkhb8f9dva0ivv47bjriyb3265vlzyd088c"; depends=[magrittr purrr Rcpp rlang]; }; ipr = derive2 { name="ipr"; version="0.1.0"; sha256="1db06r784c6jga0anp6p5b3k47yfhr84nzxyjn52pc9zkg3yifjm"; depends=[]; }; @@ -11383,7 +11539,7 @@ in with self; { irt = derive2 { name="irt"; version="0.2.7"; sha256="1qckf91pady8gbp0bdbskijyqmmv2d9icb6ihmf0d2r49f37q4fh"; depends=[Rcpp]; }; irtDemo = derive2 { name="irtDemo"; version="0.1.4"; sha256="0rpwryybnj7b4bxn0mn1m496y85s2fpqdd78lmdl6jg1ck4j4pb3"; depends=[fGarch shiny]; }; irtGUI = derive2 { name="irtGUI"; version="0.2"; sha256="1hyabm9wvld1b1gvcn02yyd8j1wrpfmpxkcj505az64lqj4p7yj0"; depends=[irtoys magrittr mirt psych readxl shiny shinycssloaders shinydashboard WrightMap writexl]; }; - irtQ = derive2 { name="irtQ"; version="0.1.0"; sha256="0730mf4b8al7ibljbi3ksl7mkm8yh54x68x5zrd3v4151azbpaq2"; depends=[dplyr ggplot2 gridExtra janitor Matrix mirt purrr reshape2 Rfast rlang statmod tibble]; }; + irtQ = derive2 { name="irtQ"; version="0.1.1"; sha256="0l46zknn683p8p5p066p27dxmbnddj74ni0s29nipb1c2rp95sqz"; depends=[dplyr ggplot2 gridExtra janitor Matrix mirt purrr reshape2 Rfast rlang statmod tibble]; }; irtawsi = derive2 { name="irtawsi"; version="0.3.4"; sha256="1fxz0k9pyf1h0mv64lj8p1n5yhgmrzs5q0vq8l77sg3zd8gv66pf"; depends=[bs4Dash diagram DT gt mirt psych readxl rmarkdown shiny shinycssloaders shinyWidgets]; }; irtoys = derive2 { name="irtoys"; version="0.2.2"; sha256="1qshz6czykgf53mq6xiswzv5xsjwrkrinpfkf1yavql4v08hs82b"; depends=[ltm sm]; }; irtpwr = derive2 { name="irtpwr"; version="1.0.0"; sha256="009m14v1frwwqxi0vlvxk740ky34xj4k7pn4csl69yk429r8l9a2"; depends=[Deriv digest ggplot2 mirt spatstat_random]; }; @@ -11396,7 +11552,7 @@ in with self; { isdparser = derive2 { name="isdparser"; version="0.4.0"; sha256="05xkffmiiyhas5hzdjdylbrvh6fjc2fjh7s00iwjxkp4ba7rwq3g"; depends=[data_table lubridate tibble]; }; isingLenzMC = derive2 { name="isingLenzMC"; version="0.2.5"; sha256="1pd1s3a1rv7vlxd5db1pgwdjps8w5im4zz2h3qzal9cwbis0hb51"; depends=[]; }; island = derive2 { name="island"; version="0.2.9"; sha256="0s76f1i22cnc5c1dzswflq43qgcpssdkb32xc2j0ajy4r8xak7kz"; depends=[]; }; - islasso = derive2 { name="islasso"; version="1.4.3"; sha256="0ym8yxpqhs8msi5svqa3mzp3x4jd7j4d8aampwchpkzyp2306rmv"; depends=[glmnet Matrix]; }; + islasso = derive2 { name="islasso"; version="1.5.1"; sha256="1dq8i1b7n78nl1hnx0g80gc16ryqpf7x6mv4pz4f6n5fc24c6vx3"; depends=[glmnet Matrix]; }; ismev = derive2 { name="ismev"; version="1.42"; sha256="19giigxwf62cdkf7mglsca649n2ignb9bxyg9zl7im1vm3ngnmqd"; depends=[mgcv]; }; isni = derive2 { name="isni"; version="1.3"; sha256="02a4vbhk26w796kxsyzqfp3bqxn64byfd5x5qma09lmdaxzmm71m"; depends=[Formula lme4 matrixcalc mvtnorm nlme nnet]; }; isnullptr = derive2 { name="isnullptr"; version="1.0.1"; sha256="0kwjxq59n3qncdw63vsdvz7v5mzbl5lmckdfgiiw35pzmahnxzh9"; depends=[]; }; @@ -11414,12 +11570,13 @@ in with self; { isoorbi = derive2 { name="isoorbi"; version="1.0.0"; sha256="1087k2xyfmbnwid787q0zypa788bixnmrjs3zm04gr5qhdbixc74"; depends=[dplyr magrittr readr rlang stringr tidyr]; }; isopam = derive2 { name="isopam"; version="1.1.0"; sha256="0cj8gn5m7r1fs4riiw1d3cmpg7zy3dyfpcr40dy18zmp4kg6ff7m"; depends=[cluster future future_apply progressr proxy vegan]; }; isopat = derive2 { name="isopat"; version="1.0"; sha256="0fznvgycyd35dh7pbq1xhp667gsficlmycn5pcrqcbs89069xr1s"; depends=[]; }; + isopleuros = derive2 { name="isopleuros"; version="1.0.0"; sha256="19hn9ydby2wi6aim6vb7wjj93f95md0g8sy41djlhr94m5v9xw3d"; depends=[]; }; isotone = derive2 { name="isotone"; version="1.1-1"; sha256="0kpzcfxac3yrvw4rszzc99r1mw78pq6bsgg0h332jamwvffhasgn"; depends=[nnls]; }; isotonic_pen = derive2 { name="isotonic.pen"; version="1.0"; sha256="1lgw15df08f4dhrjjfr0jqkcvxwad92kflj2px526pcxwkj7cj3i"; depends=[coneproj Matrix]; }; isotracer = derive2 { name="isotracer"; version="1.1.4"; sha256="0wyvzfz0layh525fdn769x6nnm5d2447vjldnli49gasqb7g49nr"; depends=[BH coda data_table dplyr latex2exp magrittr pillar purrr Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr tidyselect]; }; - isotree = derive2 { name="isotree"; version="0.5.19-1"; sha256="1l42dgfr51k6dnm07yxpawwqwy9a4rsc6k90fviw4sf71byazqa0"; depends=[Rcpp]; }; + isotree = derive2 { name="isotree"; version="0.5.20"; sha256="1xp6innz9rry21bhq8ask3pq20hn2nsqdkbqz0f9lckbhk2knl4z"; depends=[Rcpp]; }; ispd = derive2 { name="ispd"; version="0.2"; sha256="06h4z342d17rkpr2wwck4sq79kprdq6fgqf10jg8cs1f52q6pq0h"; depends=[ibd]; }; - ispdata = derive2 { name="ispdata"; version="1.1"; sha256="1bs2qff15qh45wp3v6kyx4b1gd5vg36cj4cjzlxdfmgdjqjjwd3m"; depends=[dplyr janitor openxlsx readr sf]; }; + ispdata = derive2 { name="ispdata"; version="1.1.2"; sha256="16vzfwn4q1q0k1m01ibknwm37j2d4x63a3zrrqj25mq8nrg134bs"; depends=[curl dplyr janitor openxlsx readr sf]; }; istacr = derive2 { name="istacr"; version="0.2.2"; sha256="1hg94p0b5zkj50ckxrgas2a8rdwh0avspykscincxkfi0wk1cx0r"; depends=[jsonlite]; }; isva = derive2 { name="isva"; version="1.9"; sha256="05qx9q0kg4ma23v4abhihw0vz017nq6hv2jzsiqx4d20ngh1dl4z"; depends=[fastICA JADE qvalue]; }; italy = derive2 { name="italy"; version="0.1.0"; sha256="0is90xp6980ja12jzi3816jq1y90ifcw6cvfmybb7invj6rr1cks"; depends=[]; }; @@ -11430,24 +11587,26 @@ in with self; { iterLap = derive2 { name="iterLap"; version="1.1-3"; sha256="079d4hxf1ha8pgibzb4r1yk7xqpzndd7hjbp8294qb26jvvcnd8q"; depends=[quadprog randtoolbox]; }; iteratoR = derive2 { name="iteratoR"; version="0.1.1"; sha256="0d0hc2669dsv1v4g5hz7n9rd4y502r4vw9795mi19jfgk662p2ml"; depends=[]; }; iterators = derive2 { name="iterators"; version="1.0.14"; sha256="0yv7rh6ghlfx727xy2aq64a7skyxp9msakaffs641q9h15d0gwyf"; depends=[]; }; + iterors = derive2 { name="iterors"; version="1.0"; sha256="0cvd1c9zmc43ks5sjbii9xvnlrdmyqw3qpf5bkn8c9i0dyrv6ap1"; depends=[rlang]; }; iterpc = derive2 { name="iterpc"; version="0.4.2"; sha256="06q7l8mz8ws4nn6gb0whnlqs8my2n8z2d2g8fvv3cxd28904dg9q"; depends=[arrangements gmp iterators]; }; itertools = derive2 { name="itertools"; version="0.1-3"; sha256="1ls5biiva10pb1dj3ph4griykb9vam02hkrdmlr5a5wf660hg6xn"; depends=[iterators]; }; itertools2 = derive2 { name="itertools2"; version="0.1.1"; sha256="0yra3x9ddvn5pp3jibm69205zazv81bz0cflw4mdvxpqadaf9f96"; depends=[iterators]; }; - itol_toolkit = derive2 { name="itol.toolkit"; version="1.1.0"; sha256="0lc7c7pfh09s460bc7gwbi12zj1sf5h1hrg65bk1cqd81hn44ndz"; depends=[ape Biostrings colourpicker data_table dplyr ggsci miniUI purrr RColorBrewer rstudioapi seqinr shiny stringr tidyr wesanderson]; }; + itol_toolkit = derive2 { name="itol.toolkit"; version="1.1.5"; sha256="0akmjzp65vsl8hnh195lhm58f0qs1c3vy8ljd6njmq2f9fvjgxpj"; depends=[ape Biostrings colourpicker data_table dplyr ggsci miniUI purrr RColorBrewer rstudioapi seqinr shiny stringr tidyr wesanderson]; }; itp = derive2 { name="itp"; version="1.2.0"; sha256="0vh5rpl88v5b6s2vfv42ahaphlspiapx82xa74ynic4rmc2ffjis"; depends=[Rcpp]; }; itraxR = derive2 { name="itraxR"; version="1.8"; sha256="1fl843dwvn92i4h0ccdp4xn5jwkkhzng367mmrr1ilwa3bq6ziqr"; depends=[broom compositions dplyr ggcorrplot ggplot2 janitor munsellinterpol readr rlang stringr tibble tidyr tiff]; }; its_analysis = derive2 { name="its.analysis"; version="1.6.0"; sha256="1ig7yq59y5xl1z182bbvgx8vsqs9sb1xscf6zxqn1qmy9f0ggf7v"; depends=[boot car forecast ggplot2 plyr]; }; itsadug = derive2 { name="itsadug"; version="2.4.1"; sha256="1sdqs279qxr3993hw08xg7b54yq03jw1597cqn6cf24sh9vpw9m1"; depends=[mgcv plotfunctions]; }; - itscalledsoccer = derive2 { name="itscalledsoccer"; version="0.2.1"; sha256="03nic9v4bc2blncqp7hjgj7381bw7d8izp76kv7pdpvjvrwz1yxc"; depends=[clisymbols crayon data_table dplyr glue httpcache httr jsonlite magrittr R6 rlang stringi tidyr]; }; + itscalledsoccer = derive2 { name="itscalledsoccer"; version="0.2.2"; sha256="089zsqk5s1ny62jjgc77y64k0w47p81gd2606f3ys0qm1yl7bsfm"; depends=[clisymbols crayon data_table dplyr glue httpcache httr jsonlite magrittr R6 rlang stringi tidyr]; }; itsdm = derive2 { name="itsdm"; version="0.2.0"; sha256="0n5x4zjqs6a3r8mpd2n6g16alfq42m9j70lm67lwwhiycpwvy1w5"; depends=[checkmate dplyr fastshap ggplot2 isotree mgcv ncdf4 outliertree patchwork raster rlang ROCit sf stars stringr tidyselect]; }; itsmr = derive2 { name="itsmr"; version="1.10"; sha256="1dr8n95rjbsfvw82v2r8rsahxa26f75icp9fn3hfr0d6g0xpkb69"; depends=[]; }; + ivDiag = derive2 { name="ivDiag"; version="1.0.4"; sha256="1kr6svbi4r3dfgx448q523c3ymfiwpg5k729n2bh19say4z6wk88"; depends=[doParallel fixest foreach future ggfortify ggplot2 glue haven lfe patchwork testthat wCorr]; }; ivaBSS = derive2 { name="ivaBSS"; version="1.0.0"; sha256="1pcls9lgj6i7qad5y28bvj2nra8kpnjslcdkjvl1q1aq8ig1yb98"; depends=[BSSprep]; }; ivdesc = derive2 { name="ivdesc"; version="1.1.1"; sha256="0b28xghncvq182kl19m8k1frnr2cqj7nvnhcd831kfd84bk2sz13"; depends=[knitr purrr rsample]; }; ivdesign = derive2 { name="ivdesign"; version="0.1.0"; sha256="02v2cnljz3gk7mb8q3p1i54rj6l02r4pirznnrshy092zvrvr26m"; depends=[]; }; ivdoctr = derive2 { name="ivdoctr"; version="1.0.1"; sha256="0204blq5yxpwz00vf49k678ccnyih0lbglbxhm1c69hx5p4a62qn"; depends=[AER coda data_table MASS Rcpp RcppArmadillo rgl sandwich]; }; ivgets = derive2 { name="ivgets"; version="0.1.1"; sha256="19bqfasrvdqvs2fvxh7h2l16qkm3rmcsv6m83x726i1i6adqj2bq"; depends=[gets ivreg stringr]; }; ivitr = derive2 { name="ivitr"; version="0.1.0"; sha256="0fc5svmkxv0s20ipwbvkvmmh1w5gb1g6va496fa9qbf99wifnmrx"; depends=[dplyr nnet randomForest rlang]; }; - ivmodel = derive2 { name="ivmodel"; version="1.9.0"; sha256="1yb2k6ciwcfiylnlb9ncz30mz10f73rxqrxk8s099ypr5k6myajk"; depends=[Formula ggplot2 Matrix reshape2]; }; + ivmodel = derive2 { name="ivmodel"; version="1.9.1"; sha256="1glm4nwlzyzwbv3nbi23qslnnqf47ps7iyd3wbr1bfdln0sr2s0l"; depends=[Formula ggplot2 Matrix reshape2]; }; ivmte = derive2 { name="ivmte"; version="1.4.0"; sha256="1bwvkw04pn4mf7iyfvaiabgx0qd83si13sr9jpqim9zqqhf1c1dc"; depends=[Formula]; }; ivprobit = derive2 { name="ivprobit"; version="1.1"; sha256="05b5gf5gmi2yrkg61n7w12qlgpnjakd1z8hhqxy6py8hahsf84gm"; depends=[Formula]; }; ivreg = derive2 { name="ivreg"; version="0.6-2"; sha256="15iqj8rzmb1hybvnw8h6v321sj4pv7bg67nfk8g9bpzyds3zm9xl"; depends=[car Formula lmtest MASS]; }; @@ -11462,13 +11621,13 @@ in with self; { jaatha = derive2 { name="jaatha"; version="3.2.4"; sha256="13vmmrbvr073mmhgh84dp2wwx3r71bnli90nycfliqfnmzwr8ynl"; depends=[assertthat R6]; }; jab_adverse_reactions = derive2 { name="jab.adverse.reactions"; version="1.0.1"; sha256="0z7i6ni1bhih5yxwng1xxf8cgg3bb1il3p32rp5vfz2hfdm68vag"; depends=[]; }; jaccard = derive2 { name="jaccard"; version="0.1.0"; sha256="1dmla6qc1k8iw2d7zfjqhf13gqd2lpsrj09yh47ljf994fpab936"; depends=[dplyr magrittr qvalue Rcpp]; }; - jack = derive2 { name="jack"; version="5.0.1"; sha256="1l72aqnikgqrn327dkk1s6lxxrgs5xfvl8p5l986y61jpx0qdif8"; depends=[BH DescTools gmp JuliaConnectoR multicool mvp partitions qspray Rcpp Ryacas spray]; }; + jack = derive2 { name="jack"; version="5.1.0"; sha256="16cgzfhzmn5cgsn1qh8q281dk0mz0a1c0y5vrrypypimr6wqdg43"; depends=[BH DescTools gmp JuliaConnectoR multicool mvp partitions qspray Rcpp Ryacas spray]; }; jackalope = derive2 { name="jackalope"; version="1.1.3"; sha256="1cslrl2cvcpi2kisb2plkz8c3wfxkbkf816nnyb06k4mv3gy4r5d"; depends=[ape R6 Rcpp RcppArmadillo RcppProgress Rhtslib zlibbioc]; }; jackknifeKME = derive2 { name="jackknifeKME"; version="1.2"; sha256="0c5shl6s46kz7a623gccqk2plrrf2g29nwr6vbny6009pq3jvzam"; depends=[imputeYn]; }; - jackknifeR = derive2 { name="jackknifeR"; version="1.0.0"; sha256="0axf5g3w36fjn6i2ak38pnqa0mhd1bahirh7yrzdhcrxcsxwv84x"; depends=[]; }; + jackknifeR = derive2 { name="jackknifeR"; version="1.2.0"; sha256="0s2kf0r102gwcrjd2ggimyxw99nwcdd0pfwgyw922f2kzwf0rxq6"; depends=[doParallel foreach]; }; jackstrap = derive2 { name="jackstrap"; version="0.1.0"; sha256="09y9pgb920lnbzlgm6j188q8lw1air83kx383a2f89zz7hhgg7jr"; depends=[Benchmarking doParallel dplyr fBasics foreach ggplot2 plyr reshape rlang scales tidyr]; }; jackstraw = derive2 { name="jackstraw"; version="1.3.8"; sha256="04d0ribg8nbxazv92hmzzks2krsx024glfc90cm9dxz7if44cwc9"; depends=[cluster ClusterR corpcor irlba qvalue rsvd]; }; - jacobi = derive2 { name="jacobi"; version="2.2.0"; sha256="0yzm6d743jbs1dvhyqx4pdcbjmspzzhnll97xqrr8z3j9rmbhprl"; depends=[Carlson Rcpp rgl Rvcg]; }; + jacobi = derive2 { name="jacobi"; version="2.3.0"; sha256="0w9gmfnwrp0b0xqrpxaq86c1x6867ry8i7xm33wwc8b1xmbcyqqk"; depends=[Carlson Rcpp rgl Rvcg]; }; jacpop = derive2 { name="jacpop"; version="0.6"; sha256="0kq6rn33civ2g6i5nwfqvcgmnn5k2dwmw60lkmz4ywm0y4xxlkai"; depends=[]; }; jadeLizardOptions = derive2 { name="jadeLizardOptions"; version="1.0.1"; sha256="1919qm9b5nb6bjwbqhsnimgn5lhcrrhd90ndnsc9kj3z3khw9mkd"; depends=[dplyr ggplot2 magrittr tibble]; }; jaggR = derive2 { name="jaggR"; version="0.1.1"; sha256="0qd4kwcc8zcvg2p1njcv7z4y5ssg77zsylph5bcaqdjxq996q7rv"; depends=[formatR glue]; }; @@ -11479,18 +11638,18 @@ in with self; { janeaustenr = derive2 { name="janeaustenr"; version="1.0.0"; sha256="1ap8p1lpbj2wz90mpf1vbyzhv2spzv03bi8lwzpsir2y77hjxhxl"; depends=[]; }; janitor = derive2 { name="janitor"; version="2.2.0"; sha256="1bmsyrmy833kzj3s9s6207f54bx1ca0ianwhiyrlp0jfbqcd1m99"; depends=[dplyr hms lifecycle lubridate magrittr purrr rlang snakecase stringi stringr tidyr tidyselect]; }; janus = derive2 { name="janus"; version="1.0.0"; sha256="0dpd24qxwlnrrjyx2gffsmfbsf1schfnq9ck75k9935gmwy2ig04"; depends=[dplyr forcats ggplot2 hash keras lubridate Metrics narray purrr RcppAlgos readr reticulate Rmpfr StatRank tensorflow tictoc]; }; - japanmesh = derive2 { name="japanmesh"; version="0.1.1"; sha256="1p6kssz0q2zjx7yd4x7jf56n62nx4g8gmbc8v2din1mgks4rm614"; depends=[dplyr geosphere lifecycle magrittr purrr rlang sf stringr tibble tidyr units vctrs]; }; japanstat = derive2 { name="japanstat"; version="0.1.0"; sha256="0rd2q23s9r075ns47ccmr8fjvdcv2jncjs9w1c668s597cwkf6lb"; depends=[cli dplyr httr pillar progress purrr rlang stringi stringr tibble tidyr vctrs]; }; jarbes = derive2 { name="jarbes"; version="2.0.0"; sha256="0lx565m9abvai47ndpryxbhpsdnh76sbaf0mixpd58raqnysc26b"; depends=[ggExtra ggplot2 gridExtra MASS mcmcplots R2jags rjags tidyr tidyverse]; }; jcext = derive2 { name="jcext"; version="0.1.1"; sha256="02zppiyq3gy551zi1g00gam1w4y1wgzn5zi9wrcz8yw915dla0ix"; depends=[ggplot2 maps RColorBrewer rworldmap sp stringr]; }; - jcolors = derive2 { name="jcolors"; version="0.0.4"; sha256="18dmjcrci0z1xy2kglrarzm0idr9g3nhbbw7f1ijls3i0piqdri6"; depends=[ggplot2 scales]; }; jcp = derive2 { name="jcp"; version="1.2"; sha256="120hhysgnb5992ss2ays7ksyy0xb251lsxgnxihc11h2rqg6wqv8"; depends=[]; }; + jdenticon = derive2 { name="jdenticon"; version="0.1.1"; sha256="19gczsf3b00rm1hbqf2azsxh698h0xbbdn3fx3nj5hr7ka24chzr"; depends=[fs glue jsonlite magick processx yesno]; }; jds_rmd = derive2 { name="jds.rmd"; version="0.3.2"; sha256="0v874sxy4wyfmhby01zv53gdnzdfijmgpi83ppfy7nqkzy0b77zm"; depends=[bookdown rmarkdown]; }; jeek = derive2 { name="jeek"; version="1.1.1"; sha256="15n0k0i1wwp72g8zqrjmglnckab3p65q3rnpg6d6h8hjcpv82i7g"; depends=[igraph lpSolve pcaPP]; }; jenga = derive2 { name="jenga"; version="1.3.0"; sha256="0yq1nkaakzajjdk3w6hzikl6pwqx0546mcb1ik688b0l55vmwphc"; depends=[abind dplyr entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments narray philentropy purrr readr Rfast scales tictoc]; }; jetpack = derive2 { name="jetpack"; version="0.5.5"; sha256="0c2vvayci7jm1p97ccgb5nccrgvdyid4fgh12cab18xwrwx1hzxx"; depends=[desc docopt remotes renv]; }; jetset = derive2 { name="jetset"; version="3.4.0"; sha256="0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"; depends=[AnnotationDbi org_Hs_eg_db]; }; - jfa = derive2 { name="jfa"; version="0.6.5"; sha256="0b8gyd57xxzw232j11vm9gjs3pa58ndg3ny9al7hjqlh2krbl8dz"; depends=[bde BH extraDistr ggplot2 moments philentropy Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders truncdist]; }; + jewel = derive2 { name="jewel"; version="2.0.0"; sha256="0js2pacdcddqwxz20hws5rrhc7s5zqls2hpfvg5inv88abkrkd17"; depends=[igraph MASS Matrix matrixcalc purrr SMUT]; }; + jfa = derive2 { name="jfa"; version="0.6.6"; sha256="0zrr5bcjh56z11pwqjz99mf8l0fc6nav3g56y6an4r3bhjw90rf2"; depends=[bde BH extraDistr ggplot2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders truncdist]; }; jgcricolors = derive2 { name="jgcricolors"; version="1.0.0"; sha256="1lg6yzqly5y2cf396b6rvfqplnfyz9v9ay2g4q9m110mng5ln96l"; depends=[ggplot2 knitr markdown RColorBrewer stringr]; }; jgsbook = derive2 { name="jgsbook"; version="1.0.2"; sha256="0q2k2fff6qzn9mgf629arpc055xjhych0bj412kq9yp68kgmzr46"; depends=[curl httr jsonlite statip]; }; jiebaR = derive2 { name="jiebaR"; version="0.11"; sha256="08v64xwr9jp4vh88x7y935khh4cmj8rwsjaxfd2c67n0445qppmd"; depends=[jiebaRD Rcpp]; }; @@ -11500,6 +11659,7 @@ in with self; { jjb = derive2 { name="jjb"; version="0.1.1"; sha256="0y9yvnzg6xngz1fvzl5jm4yb1pg6wrp3id0gysv214wcznf3gna9"; depends=[]; }; jlctree = derive2 { name="jlctree"; version="0.0.2"; sha256="0l8piz0m9iv9lbw35yx1ww0db0pv0qhbvkz4l36fwjsgnjlh8f6a"; depends=[lme4 rpart survival]; }; jlsm = derive2 { name="jlsm"; version="0.1.0"; sha256="01wmm7555v31kbmy6lcv9j0rr0cav5vsyhl09l7zh0qm6m3ddw7p"; depends=[boot ellipse expm lvm4net MASS Matrix matrixcalc mvtnorm network pROC]; }; + jmBIG = derive2 { name="jmBIG"; version="0.1.0"; sha256="129b39ax1flw9d4aar0v6640axm934myipag524vh5dfzc2dsrdr"; depends=[dplyr FastJM JMbayes2 joineRML nlme rstanarm survival]; }; jmatrix = derive2 { name="jmatrix"; version="1.1"; sha256="1rww7fji1angch5az9cs599fii96189p9f92s8h4fpw54snz2hrw"; depends=[memuse Rcpp]; }; jmcm = derive2 { name="jmcm"; version="0.2.4"; sha256="1dpm94k2s2vx3dvd5rk7xrsq786phl0hq7xi9fjjxbr8qfmxhsck"; depends=[Formula Rcpp RcppArmadillo roptim]; }; jmdem = derive2 { name="jmdem"; version="1.0.1"; sha256="15zrxgd5fgi4wzp4s963pnwj3vkgxs4ygqrcpncy9b6j2cxrivdc"; depends=[statmod VGAM]; }; @@ -11507,7 +11667,7 @@ in with self; { jmotif = derive2 { name="jmotif"; version="1.1.1"; sha256="0b2qllpfgs6q5fwfhxl5b4xdyzbvnja7ld766akf0xxznxvglkrg"; depends=[Rcpp RcppArmadillo]; }; jmuOutlier = derive2 { name="jmuOutlier"; version="2.2"; sha256="1vj9n1hsf780f7l0a22kmi3qm84j4dzjybjkh5zwh6bhwfjnjws3"; depends=[]; }; jmv = derive2 { name="jmv"; version="2.3.4"; sha256="0mhai7kvc6fpsybpgj6adnbqsg3nlx16zfjdg6lxkhzjdv0s4gpm"; depends=[afex BayesFactor car dplyr emmeans GGally ggplot2 ggrepel ggridges GPArotation jmvcore lavaan magrittr MASS multcomp mvnormtest nnet PMCMR psych R6 ROCR vcd vcdExtra]; }; - jmvReadWrite = derive2 { name="jmvReadWrite"; version="0.3.3"; sha256="0jyrilrh85x5qrkmwp7fvwa9mg8p769qcfnrlj3chv1q2ddfn69j"; depends=[rjson zip]; }; + jmvReadWrite = derive2 { name="jmvReadWrite"; version="0.3.5"; sha256="19dmz26scndfdwsn7zfpwbw9qdnxmh3b2nd2s67kvn1l5ranlhd8"; depends=[rjson zip]; }; jmvconnect = derive2 { name="jmvconnect"; version="2.3.13"; sha256="0b5klfn4986haw3hhy3aarf88g08s1d46b8xrpxxqnwqw8yd7l88"; depends=[BH evaluate httr jmvcore rappdirs Rcpp]; }; jmvcore = derive2 { name="jmvcore"; version="2.3.19"; sha256="0cwchz7n50sxin65nc1k5bygci2yxp68yypmvq2a0fyf56r53gdg"; depends=[base64enc jsonlite R6 rlang stringi]; }; job = derive2 { name="job"; version="0.3.0"; sha256="0d7pw3q5lqlgmav1vx63y8l6gdav96656bg378wj001rx5gx052h"; depends=[digest rstudioapi]; }; @@ -11520,15 +11680,17 @@ in with self; { jointDiag = derive2 { name="jointDiag"; version="0.4"; sha256="18x6rxaxhz9hcp6rfmjlanbfsc5q61p6xcxixnc8ayyxbdq7q6rf"; depends=[]; }; jointMeanCov = derive2 { name="jointMeanCov"; version="0.1.0"; sha256="1cai5g63n11dirn9fldzkqxcnkxc20ndr9ygrr9rk0s1qz8x63pb"; depends=[glasso]; }; jointNmix = derive2 { name="jointNmix"; version="1.0"; sha256="0ibh7hqkpzlfk3bk4d2dd64jhr8cvw563k082vwnljiam7k5nj4b"; depends=[]; }; + jointPm = derive2 { name="jointPm"; version="2.3.2"; sha256="0z3icbmgz0j3a2gg4gsw9h6wr0gd54kh36q57a7z71hlsrniwyfn"; depends=[]; }; jointVIP = derive2 { name="jointVIP"; version="0.1.2"; sha256="1m1fqngc2000i7mfp6rcs5js0bg0kzspmavi55ksrb1kybf8rh7k"; depends=[ggplot2 ggrepel]; }; jointseg = derive2 { name="jointseg"; version="1.0.2"; sha256="0zilkxk30w3l9mwikmsgvpy5misjggs98c3bjrjy1pfc4b0is943"; depends=[acnr DNAcopy matrixStats]; }; - jomo = derive2 { name="jomo"; version="2.7-5"; sha256="05xfkj65nqd987pp5bhl4jy46qxwjll5mxnjii6qrmfmjld177q5"; depends=[lme4 MASS ordinal survival tibble]; }; + jomo = derive2 { name="jomo"; version="2.7-6"; sha256="1np2sw0kq21kdhkv227pz2rqvpxg06r3mk93ggkrz5nl45ajmyiz"; depends=[lme4 MASS ordinal survival tibble]; }; jordan = derive2 { name="jordan"; version="1.0-1"; sha256="1d0my0lf8bmlmygz9f23skywzsrhy4xaykyrblbmhb00l0vxpa5s"; depends=[emulator mathjaxr onion]; }; josaplay = derive2 { name="josaplay"; version="0.1.3"; sha256="0q6kjk3mjxwbqvq3zz0ylpi1viznp9pxzngqpjzv5sibv0ndh0lf"; depends=[magrittr utf8]; }; jose = derive2 { name="jose"; version="1.2.0"; sha256="09k6wnnqlsbmlag4156rcsnavph52grqagkax9kd1sxgpknril3v"; depends=[jsonlite openssl]; }; jot = derive2 { name="jot"; version="0.0.4"; sha256="0pzlj9vcz7p3zcg2y32cir593x193cxswkc3y9d1xh58vamrgs60"; depends=[cli yaml]; }; journalabbr = derive2 { name="journalabbr"; version="0.4.0"; sha256="17b9igqnd9f9pp1wkpg9zvkmvzhhhnr4nrkgzpvlb0f9hihaj60s"; depends=[data_table httr purrr shiny stringi stringr tidytable]; }; joyn = derive2 { name="joyn"; version="0.1.4"; sha256="17x9rwcrqv7qx9w0cfyshjsij9cdl0fk13cfqbv0ibnc2nfycw87"; depends=[cli data_table glue rlang]; }; + jpcity = derive2 { name="jpcity"; version="0.1.1"; sha256="0aw97p2ac8kb32f0lmji7xqr985vxl1i708pjaghzc3q1w8mx9ab"; depends=[cli dplyr lubridate pillar purrr rlang stringr tibble vctrs]; }; jpeg = derive2 { name="jpeg"; version="0.1-10"; sha256="1jkqj58hj33ar9wyl7c1cnj3h42icq7crmjk93n933q8qc4zdnf8"; depends=[]; }; jpgrid = derive2 { name="jpgrid"; version="0.3.1"; sha256="0pp5nwvv0sglr089m78q4kaq7pkj7w2qdylpaahyjqb4iqk06grh"; depends=[cli dplyr geosphere lifecycle pillar purrr rlang sf stars stringr tibble tidyr tidyselect units vctrs]; }; jpmesh = derive2 { name="jpmesh"; version="2.1.0"; sha256="0q8adf582h92qwdwgh4dk53s8rixrrh96r8vzy6bwxvizqf0i3y8"; depends=[leaflet magrittr memoise miniUI purrr rlang sf shiny tibble units vctrs]; }; @@ -11537,24 +11699,24 @@ in with self; { jquerylib = derive2 { name="jquerylib"; version="0.1.4"; sha256="04a40v4znpj98j7y6009d74a6g9dchj5rr3p08cgz9p3rlfw3g7h"; depends=[htmltools]; }; jrc = derive2 { name="jrc"; version="0.5.1"; sha256="0lg647nfijj6grlmwkasd6di5h6286dxmw1373k6n5gwym1g1l36"; depends=[httpuv jsonlite mime R_utils R6 stringi stringr]; }; jrich = derive2 { name="jrich"; version="0.60-35"; sha256="1y486bfqmfg3f22wm0lfk3lh20ljgi8qrgn5jji0f417wh48nf0x"; depends=[ape]; }; - jrt = derive2 { name="jrt"; version="1.1.1"; sha256="0hgcl8ddrhha6jpi3rlp68i7z0avz3q7iaslvcnblmcg9qrrqpfx"; depends=[directlabels dplyr ggplot2 ggsci irr mirt psych tidyr]; }; + jrt = derive2 { name="jrt"; version="1.1.2"; sha256="03k5dgqqzhhd6n4pdpcyq0zy4dj35yj41c6wnz4pa2i0i16jgfdq"; depends=[directlabels dplyr ggplot2 ggsci irr mirt psych tidyr]; }; jrvFinance = derive2 { name="jrvFinance"; version="1.4.3"; sha256="0g3w65avys5chni0zlahzwqgv09z9na08yhay385ax33ddwrcrjv"; depends=[]; }; js = derive2 { name="js"; version="1.2"; sha256="0s5rj845255a4fzv4h76gcnnqyl5cg3c03r2ay3f00jxnxvvigcg"; depends=[V8]; }; jsTree = derive2 { name="jsTree"; version="1.2"; sha256="06mmz55brm6w19vnlk1w8qaz0n3czlyl4fs62nzgdlsdjn8pad1h"; depends=[data_table htmltools htmlwidgets jsonlite]; }; jsTreeR = derive2 { name="jsTreeR"; version="2.3.1"; sha256="0502lphkq8axl9k89hnqjcsnppfxscdz8mm725kssk4d3bg8dgmy"; depends=[base64enc fontawesome htmltools htmlwidgets jquerylib miniUI R_utils rstudioapi shiny shinyAce]; }; jshintr = derive2 { name="jshintr"; version="0.1.0"; sha256="08j28c2ab9fh6g7qp2vl8j5hz5kkikvl2id979kv92ach9vranyd"; depends=[htmltools htmlwidgets rstudioapi]; }; jskm = derive2 { name="jskm"; version="0.5"; sha256="1g0was3713f7hzbkj4v0g7pply036r07v1jrzlvxpk3bsg37257c"; depends=[ggplot2 ggpubr scales survey survival]; }; - jsmodule = derive2 { name="jsmodule"; version="1.4.0"; sha256="0zzdliz850ljhdj76wz7zxbwlcdg5mhbcblxsxndil8xsp81l6ad"; depends=[data_table DT epiDisplay geepack GGally ggplot2 ggpubr haven Hmisc jskm jstable labelled MatchIt maxstat officer pROC purrr RColorBrewer readr readxl rstudioapi rvg see shiny shinycustomloader shinyWidgets survey survIDINRI survival timeROC]; }; + jsmodule = derive2 { name="jsmodule"; version="1.4.1"; sha256="14ldip7v0jdxbcaakg9gl10r6pc7jzr2570ic46h8l32g0c10mir"; depends=[data_table DT epiDisplay geepack GGally ggplot2 ggpubr haven Hmisc jskm jstable labelled MatchIt maxstat officer pROC purrr RColorBrewer readr readxl rstudioapi rvg see shiny shinycustomloader shinyWidgets survey survIDINRI survival timeROC]; }; json2aRgs = derive2 { name="json2aRgs"; version="0.3.0"; sha256="0n1kj1kll6x7ar00y32pf8z38z7z1bnj29nlv9dx068n4kmy89v7"; depends=[jsonlite yaml]; }; json64 = derive2 { name="json64"; version="0.1.3"; sha256="19q8qgf4wnd3np12ajy180klpjy0g2csw5micwb4sl7qfzl6wc7j"; depends=[jsonlite]; }; + jsonNormalize = derive2 { name="jsonNormalize"; version="1.0.0"; sha256="1szvi8c0r75jv7y2y1jsampb783svvx04x4rvyw8v9qkiw0qpfis"; depends=[rstudioapi V8]; }; jsonStrings = derive2 { name="jsonStrings"; version="2.1.1"; sha256="0936nhm6zx4la7i6fwigz0kvgf9dirz422vhrzjr45f37pyfvkxy"; depends=[R6 Rcpp]; }; jsonify = derive2 { name="jsonify"; version="1.2.2"; sha256="0bxgyj5b1hnijq5315g050giixy4k5mjz2zdx8yil0igb5ifji9p"; depends=[rapidjsonr Rcpp]; }; jsonld = derive2 { name="jsonld"; version="2.2"; sha256="0bplz2s97wl9yp383jazykh5647iw6kbr1zanqai2s0sxp1xbwn8"; depends=[curl jsonlite V8]; }; jsonlite = derive2 { name="jsonlite"; version="1.8.4"; sha256="0y0jzf74c3q1sghgarvwmrkvxs7yahywd342m8c0jsr28bhapskr"; depends=[]; }; jsonstat = derive2 { name="jsonstat"; version="0.0.2"; sha256="0p0d3snl1971p5ikrkmwqrjjh4fy0b89qk3rnd1dayfb0r80xnnj"; depends=[cli dplyr jsonlite rlang]; }; - jsontools = derive2 { name="jsontools"; version="0.1.0"; sha256="13i1g8lmzgs7hd0xay4gm8z2myzbjzi73fwp9x4f4f9mywj7zl5s"; depends=[bit64 DBI glue jsonlite magrittr pillar purrr rlang RSQLite tibble tidyselect vctrs withr]; }; jsonvalidate = derive2 { name="jsonvalidate"; version="1.3.2"; sha256="0myvm93azl6mj60l8fp91qa3ln3nnwj4p48xli8k215sm6zhhv1b"; depends=[V8]; }; - jstable = derive2 { name="jstable"; version="1.0.7"; sha256="1hs202z49aazsadr0jb67wk43i18y3h1aw0xflfmvirxjxr63xm8"; depends=[coxme data_table dplyr geepack labelled lme4 magrittr purrr survey survival tableone tibble]; }; + jstable = derive2 { name="jstable"; version="1.1.1"; sha256="10lggan0rf9r0p8cf8blpz7plqq4dzwkvfm2dqrha5hparl6gka4"; depends=[coxme data_table dplyr geepack labelled lme4 magrittr purrr survey survival tableone tibble]; }; jstor = derive2 { name="jstor"; version="0.3.10"; sha256="0k2y3h01yra8yns97j4yyxa1jmclrd6z5xxiv4m8da5q5cgkc970"; depends=[cli crayon dplyr furrr magrittr pryr purrr readr rlang stringr tibble tidyr xml2]; }; jtdm = derive2 { name="jtdm"; version="0.1-0"; sha256="0bbnrayny9hafck5nksmgabnnrpl9iq17zs0qb1a35kmrmbjcskk"; depends=[ggforce ggplot2 gridExtra mniw mvtnorm reshape2]; }; jti = derive2 { name="jti"; version="0.8.4"; sha256="0jxqv3xa9yyzizx1rhxjv65c8b253shridy57skrd5kya701n460"; depends=[igraph Rcpp RcppArmadillo sparta]; }; @@ -11578,6 +11740,7 @@ in with self; { kalmanfilter = derive2 { name="kalmanfilter"; version="2.0.1"; sha256="1041hhxdk0z9anca7ipbs5j0j1wyd4pq2j7qrg3jkxp3qp856dxg"; depends=[Rcpp RcppArmadillo]; }; kamila = derive2 { name="kamila"; version="0.1.2"; sha256="01rwalv2qigxl3j3jyhrdbxlarwf0xdc8xa6c42sgcl6qpna5vn7"; depends=[abind gtools KernSmooth plyr Rcpp]; }; kangar00 = derive2 { name="kangar00"; version="1.4.1"; sha256="0c3wrzk7k322xj0yzladxdhh2j91qm7m0dyqqqfsshfkh8d22m48"; depends=[bigmemory biomaRt CompQuadForm data_table igraph KEGGgraph lattice sqldf]; }; + kanjistat = derive2 { name="kanjistat"; version="0.9.1"; sha256="0yp5x1zvf8k4gaz2fpi6qa1mpfkmsvdv7y0b7scbf168yjqq8m7a"; depends=[crayon dendextend gsubfn lifecycle png purrr rlang ROI showtext stringi stringr sysfonts transport xml2]; }; kantorovich = derive2 { name="kantorovich"; version="3.0.1"; sha256="140fmbwaxn968n75my9336svgk7jw5zdq2ah1lcnl2m7qhxkvdxk"; depends=[CVXR gmp lpSolve rcdd Rglpk slam]; }; kaos = derive2 { name="kaos"; version="0.1.2"; sha256="0hzzb8ldydl4g3cl1579q8jv835q4cdmn8agafp6qqdhwi1xxw8k"; depends=[ggplot2 reshape2]; }; kaphom = derive2 { name="kaphom"; version="0.3"; sha256="081drgckirc0wv2viyhhnabrlfzi0nkpq6pffw2rxfjyxdsyvnwa"; depends=[]; }; @@ -11596,6 +11759,7 @@ in with self; { kdevine = derive2 { name="kdevine"; version="0.4.4"; sha256="1508dyjqn4vrs83b70h06ffygrx6iwqcaa360b08j3qlrlq742c6"; depends=[cctools doParallel foreach kdecopula KernSmooth MASS qrng Rcpp VineCopula]; }; kdist = derive2 { name="kdist"; version="0.2"; sha256="18q7njvsb9sbm412c6ms4b4nxg768z9qahws5rnin06gvb25nfcx"; depends=[]; }; kdpee = derive2 { name="kdpee"; version="1.0.0"; sha256="1vrpr1rkk0ypl5yi3cjgw0fglyx9r2fbcq21n172ax0w3kdyflgk"; depends=[checkmate]; }; + kdry = derive2 { name="kdry"; version="0.0.1"; sha256="01xf4cd87yz2ah87jz40b5hnkww7fpryb5vcrp324n444cm7lsc1"; depends=[data_table doParallel foreach Hmisc magrittr]; }; keep = derive2 { name="keep"; version="1.0"; sha256="12803hhrs9v94rv6qaihk1f1ls7lx4cy2pa30v4p1r2z9afx9bjf"; depends=[]; }; kehra = derive2 { name="kehra"; version="0.1"; sha256="1cc0bmbg0dncay50ap7cs2516qngzz3ddaab0jk5r6lwfq87h8qx"; depends=[Hmisc raster reshape2 sp stringr xts zoo]; }; kelvin = derive2 { name="kelvin"; version="2.0-2"; sha256="0hjycqga3yjrzpgc911nk64nsjrpim4v7219f7iwi1snx0ydhqzf"; depends=[Bessel]; }; @@ -11609,15 +11773,15 @@ in with self; { kerndwd = derive2 { name="kerndwd"; version="2.0.3"; sha256="0lvm007wzhyagyafmq47819hn66riwdcpymn56clc1sgch9i933m"; depends=[]; }; kernelFactory = derive2 { name="kernelFactory"; version="0.3.0"; sha256="001kw9k3ivd4drd4mwqapkkk3f4jgljiaprhg2630hmll064s89j"; depends=[AUC genalg kernlab randomForest]; }; kernelPhil = derive2 { name="kernelPhil"; version="0.1"; sha256="0pzsknb0ibm3v0ibfaklb4g2mx7zrva4m29356cirwd29nmd8bqw"; depends=[benchmarkme directlabels dplyr ggplot2 gridExtra Hmisc pbapply reshape2 rgdal wordspace]; }; - kernelboot = derive2 { name="kernelboot"; version="0.1.9"; sha256="1xqkkgy2b5x9ykwnk0pfhy7cmghzg5aivw6514cx9g0yvdprjmyy"; depends=[future future_apply parallelly Rcpp]; }; - kernelshap = derive2 { name="kernelshap"; version="0.3.5"; sha256="0h351apmig6hf9dx52ci6y1x9xv8gv44p1xcn98dq9mbpc1jbwd3"; depends=[foreach]; }; + kernelboot = derive2 { name="kernelboot"; version="0.1.10"; sha256="1fv00hbm4l5dxcw8hq2wlfxng49bc8k608ny70g3fy0grkh7r8vy"; depends=[future future_apply parallelly Rcpp]; }; + kernelshap = derive2 { name="kernelshap"; version="0.3.7"; sha256="123ngjs26062ips80iyg8kiwzdf7664im97a86mfmvndnkc0dvc7"; depends=[foreach]; }; kernhaz = derive2 { name="kernhaz"; version="0.1.0"; sha256="1cxwjnfyhxfjdbhs21airycs704jic21pdpsbxsx37wkl11cxpai"; depends=[doParallel foreach GA rgl]; }; kernlab = derive2 { name="kernlab"; version="0.9-32"; sha256="1p3gbn9qgc6yqx9irkl8c23khvkx77jl96hk9hn4vsrx6i7g6kk5"; depends=[]; }; kernplus = derive2 { name="kernplus"; version="0.1.2"; sha256="0z5zpj89nw7cdphg6frmjwqjxsl6g95xsa8zgsxmw2q75wwj1saz"; depends=[circular KernSmooth mixtools]; }; - kernscr = derive2 { name="kernscr"; version="1.0.5"; sha256="1kcj710q8jbc34g6fcv2nk07hpsb81mfx8hvivgxq8x58028gjzs"; depends=[MASS mvtnorm]; }; + kernscr = derive2 { name="kernscr"; version="1.0.6"; sha256="0vk0ppb24la6876sw96kk5s3lw4qqs56m507xncbdvjjgw6pq180"; depends=[MASS mvtnorm]; }; kernstadapt = derive2 { name="kernstadapt"; version="0.0.2"; sha256="0hbzc0xqlgs3kbblm247hkaic7s9a5slz22slh5dz9ddgfdy1z21"; depends=[misc3d sparr spatstat_explore spatstat_geom spatstat_random spatstat_utils]; }; kesernetwork = derive2 { name="kesernetwork"; version="0.1.0"; sha256="0q42zry3qgg38aas0cxy7lwpj9mj45crcbs353d1d1is0w1avh09"; depends=[config data_table dplyr DT ggplot2 golem htmltools plotly reactable rintrojs rlang shiny shinyBS shinycssloaders shinydashboard shinydashboardPlus shinyhelper shinyWidgets stringr visNetwork yaml]; }; - keyATM = derive2 { name="keyATM"; version="0.4.2"; sha256="0zjdg5q38a1pw74id1hk9sxkk2k0gbwy1irvmg76i2q4x8cayd0w"; depends=[dplyr fastmap future_apply ggplot2 ggrepel magrittr MASS Matrix matrixNormal pgdraw purrr quanteda Rcpp RcppEigen RcppProgress rlang scales stringr tibble tidyr]; }; + keyATM = derive2 { name="keyATM"; version="0.5.0"; sha256="1xrwdpv5jsak0ss45qlyifksg3bja6dcm00xdvg4rq55gax4885v"; depends=[cli dplyr fastmap fs future_apply ggplot2 ggrepel magrittr MASS Matrix matrixNormal pgdraw purrr quanteda Rcpp RcppEigen rlang stringr tibble tidyr tidyselect]; }; keyToEnglish = derive2 { name="keyToEnglish"; version="0.2.1"; sha256="1wzn93gp1v6y8qh9kypydqadnf6fc7xzjili77b7j402hvb0a8zg"; depends=[jsonlite openssl stringr]; }; keyholder = derive2 { name="keyholder"; version="0.1.7"; sha256="19xbzpanwyfxywzki3m5jvams40ppxkplm7p1jqm6d5rviidiq1j"; depends=[dplyr rlang tibble]; }; keyplayer = derive2 { name="keyplayer"; version="1.0.3"; sha256="0j4n46r9ivkbzqz8g22dq2bpmx7bs05yb5qp27p9jnfh5x19v2ds"; depends=[igraph matpow sna]; }; @@ -11632,12 +11796,13 @@ in with self; { kgc = derive2 { name="kgc"; version="1.0.0.2"; sha256="14zbcimnglh5jj07dcaxp1dfjaz8syswy29nf8z39qmslv1hg9kk"; depends=[plyr shiny shinythemes]; }; kgen = derive2 { name="kgen"; version="0.2.1"; sha256="02i3qki6qshq5sppn6mchfwyc6dbgchizylgkqj95jv63grja0wc"; depends=[checkmate data_table pbapply rappdirs reticulate rjson]; }; kgp = derive2 { name="kgp"; version="1.1.1"; sha256="021113hqs7ack852mksssaac1lj0k4mpf94yiws67qiygmsa693k"; depends=[]; }; + kgrams = derive2 { name="kgrams"; version="0.1.5"; sha256="01ig95sr6nnv52cbj0z8qjq49z0ywyhs9b5214hwgnqs81w1pcb9"; depends=[Rcpp RcppProgress Rdpack rlang]; }; kgschart = derive2 { name="kgschart"; version="1.3.5"; sha256="1gdsrmnv8z99cldvig7grlq8gsbv3wpx7zdamw85lz563n4ln94d"; depends=[abind deepnet ggplot2 gridExtra magrittr matrixStats nnet png shiny stringr]; }; - khroma = derive2 { name="khroma"; version="1.9.0"; sha256="1bdwh6b1jbfygghf9vwar8x104np2z02yn6gg8zsddzc3jgc70dr"; depends=[]; }; + khroma = derive2 { name="khroma"; version="1.10.0"; sha256="0kf9r21q7f21nwiw9mc6k2x5hnwayg0fiwydi4w8zjvzkwlskrj7"; depends=[]; }; kibior = derive2 { name="kibior"; version="0.1.1"; sha256="1acrdlqbklhhd69i1gija8r3nsdgcnfvk5ngz7b2ndy2f58w5ynf"; depends=[Biostrings data_table dplyr elastic jsonlite magrittr purrr R6 rio Rsamtools rtracklayer stringr tibble tidyr]; }; kidney_epi = derive2 { name="kidney.epi"; version="1.2.0"; sha256="1hd6w7kxim5slmmqalf5sfjg8jcvhyzn5g4gf6h0lmaprsfszhja"; depends=[]; }; - kidsides = derive2 { name="kidsides"; version="0.4.1"; sha256="0xplgmmkjw62934hprwqxdlmr8665r8w47wssyk5vn0fzfisj1vq"; depends=[DBI R_utils RSQLite]; }; - kim = derive2 { name="kim"; version="0.5.212"; sha256="0ny9vcjb9fww3yyr4smjzxaxr24fdnph8csrlfsd40shk3vjbbrf"; depends=[data_table remotes]; }; + kidsides = derive2 { name="kidsides"; version="0.5.0"; sha256="0iw6mr5yqgj4sn3bvirzcdzzxdxpkyr2ci4flzyjb60p0gfwlr7b"; depends=[DBI R_utils RSQLite]; }; + kim = derive2 { name="kim"; version="0.5.260"; sha256="0kx03mfksnn9jv65318f6ahnq5jwz2rsr3pjwm9fcxlvwvhq9vrn"; depends=[data_table remotes]; }; kimfilter = derive2 { name="kimfilter"; version="1.0.1"; sha256="142nlf91gh6l81c0qgwjfya2mj5ral478hp2zy3i0j01flyj2l08"; depends=[Rcpp RcppArmadillo]; }; kimisc = derive2 { name="kimisc"; version="0.4"; sha256="0nbjspbq9akhmamfdn192p5b6ki7xqhp422ih6v77xsnrhl5m24z"; depends=[memoise plyr pryr]; }; kin_cohort = derive2 { name="kin.cohort"; version="0.7"; sha256="0wijsjz0piz5j9rm2nr3d5dfpiyba740mbfbkmfll9pz72s58wz8"; depends=[survival]; }; @@ -11654,7 +11819,7 @@ in with self; { kknn = derive2 { name="kknn"; version="1.3.1"; sha256="1nzkg3dxaiqp87p56wm895qx5xn86hv5hjr73qvl1yiaxiq0x112"; depends=[igraph Matrix]; }; kko = derive2 { name="kko"; version="1.0.1"; sha256="08mgi7j1kirfnjsj3xi2wgr32cnqb88vxs15gfm6f1gq853xvhch"; depends=[doParallel ExtDist foreach grpreg knockoff]; }; klaR = derive2 { name="klaR"; version="1.7-2"; sha256="0qdxripkwdqw5w6dvf9wj7d34z67qygi18nm98c76y95p3nw6dc0"; depends=[combinat MASS questionr]; }; - klassR = derive2 { name="klassR"; version="0.2.0"; sha256="0wrg8z88qilkhqnhcrijprxsbi3zq224wdrdwpz12igmvibhhjvf"; depends=[httr jsonlite tm]; }; + klassR = derive2 { name="klassR"; version="0.2.1"; sha256="01d0gb5pascgv1h4fgcc0ndlrg7z4mv76bigmw0mixx92i9x61jk"; depends=[httr jsonlite tm]; }; klausuR = derive2 { name="klausuR"; version="0.12-14"; sha256="1nc84q5jaya4d7bi1m8zwbmyfsxzmv470nq2nj2j8xn5jv6ch4a5"; depends=[psych xtable]; }; kldtools = derive2 { name="kldtools"; version="1.2"; sha256="1r6j6ddylzxsfmymnf8hp7sm8c2ckr8xrdz75xlkgp4fgay106r2"; depends=[]; }; klexdatr = derive2 { name="klexdatr"; version="0.1.2"; sha256="141xs03sb0ixhjpr388fwf5h124mqkbj0k1xqw0whdhrm5051qsz"; depends=[sf]; }; @@ -11671,10 +11836,11 @@ in with self; { kmodR = derive2 { name="kmodR"; version="0.2.0"; sha256="1khp383k5rr7nnn1fih7wfw6k202igxcj3ddwawyp895qa9w12cj"; depends=[]; }; knitLatex = derive2 { name="knitLatex"; version="0.9.0"; sha256="1igacc2sx8897wmnhh8kngd0fq6zqbi30chy5c8jw60zc38mi3wi"; depends=[knitr]; }; knitcitations = derive2 { name="knitcitations"; version="1.0.12"; sha256="1c7pl8jh61pv0brqanmyfy6s0ipxn312b2hjypcsjaph6b8mhj2q"; depends=[digest httr RefManageR]; }; - knitr = derive2 { name="knitr"; version="1.42"; sha256="1wrha732mhlc3la61ibm5l1b5qygswwfwjpmvq0s2kcy12hg2i4k"; depends=[evaluate highr xfun yaml]; }; + knitr = derive2 { name="knitr"; version="1.43"; sha256="0g6m9s53qyf34ba4db97k31sxg2ikndfp747229sm6ilikmbla9x"; depends=[evaluate highr xfun yaml]; }; knitrBootstrap = derive2 { name="knitrBootstrap"; version="1.0.2"; sha256="1aj60j7f0gcs120fdrnfbnb7vk7lfn1phil0mghg6a5zldz4cqs3"; depends=[knitr markdown rmarkdown]; }; knitrProgressBar = derive2 { name="knitrProgressBar"; version="1.1.0"; sha256="18v5jrscfrin3mcs63bpj0q1drxk3zkhlbw93sqh0qrq04d4x02v"; depends=[R_oo R6]; }; knitrdata = derive2 { name="knitrdata"; version="0.6.1"; sha256="1am79r4rkrw7vjmyzc0cq4p52l2ypdw99rfhrvdsaq11yllx08mx"; depends=[knitr xfun]; }; + knitxl = derive2 { name="knitxl"; version="0.1.0"; sha256="1l0qq9mqfwkxkkms8xrmf7wzrgg27syrndng7vrrymda67pcxnl4"; depends=[commonmark glue knitr magrittr openxlsx purrr R6 readbitmap readr stringr xml2 yaml]; }; knn_covertree = derive2 { name="knn.covertree"; version="1.0"; sha256="0msfcmwydws7q7m5jdb0dxab0nkbl7mq5llg6v3r4qrnlvrdggvz"; depends=[Matrix Rcpp RcppEigen]; }; knnp = derive2 { name="knnp"; version="2.0.0"; sha256="0qgq8la3zndlb1wwqv9b2kw52y9ns36pi4ds68pkm81bhzq5nqis"; depends=[doParallel foreach forecast parallelDist plyr]; }; knnwtsim = derive2 { name="knnwtsim"; version="1.0.0"; sha256="1sxz1hzbx41z3w1qf2zf8fmf3pd64jrnc37ndxx28yc70vhwjd1n"; depends=[]; }; @@ -11699,6 +11865,7 @@ in with self; { kriging = derive2 { name="kriging"; version="1.2"; sha256="1s8cvc88g0wldr40hsv00145bym071bmp8klr0pbmvx0gfrqs8y8"; depends=[]; }; krippendorffsalpha = derive2 { name="krippendorffsalpha"; version="2.0"; sha256="0zzhpdmmaiaqrg1xi9jg6lzrhzpav8wyrc8z38rf8x6kxmr2bx3m"; depends=[]; }; krm = derive2 { name="krm"; version="2022.10-17"; sha256="142scj7cgg7sv0g17mivpgzk3h8jczf40h1padixfgx3204fj4xa"; depends=[kyotil]; }; + kronos = derive2 { name="kronos"; version="1.0.0"; sha256="0iyq3n0mnzjxgfn0g4l8d7jpnl7lvand4j602prc1jljsylyxlpj"; depends=[ggplot2]; }; ks = derive2 { name="ks"; version="1.14.0"; sha256="14a3pcxxcsfkqz5j6n2wlxkp0gsdp5mzdq7ipcjb65q2gdmwbf9d"; depends=[FNN kernlab KernSmooth Matrix mclust mgcv multicool mvtnorm plot3D pracma]; }; ksNN = derive2 { name="ksNN"; version="0.1.2"; sha256="06x471hck95xqy7rbh53ibhzh6kfjra7y9ipqdj2rqdkmfdj72q8"; depends=[Rcpp]; }; kselection = derive2 { name="kselection"; version="0.2.1"; sha256="03ax8b63fkq4sfsb9zvh2hk4g9nmd8wh5lla26wb7lan4s197dz6"; depends=[]; }; @@ -11725,20 +11892,20 @@ in with self; { l2boost = derive2 { name="l2boost"; version="1.0.3"; sha256="1ma11x5wb2iqh10wdlwbwdvgzm4qxp94c5pxgvnmwqzmjgngirdh"; depends=[MASS]; }; laGP = derive2 { name="laGP"; version="1.5-9"; sha256="1wwmy662mpifphf3bbaqamg9mnvb3rbxhpf1p00r6xqg2xfzgx1b"; depends=[tgp]; }; labNorm = derive2 { name="labNorm"; version="1.0.1"; sha256="0sd77b4g9r3y1kch9zxxa2p7hnsjh72fspi3f2hkb8rk3g28npxx"; depends=[cli dplyr forcats ggplot2 glue purrr rappdirs scales tibble withr yesno]; }; - labdsv = derive2 { name="labdsv"; version="2.0-1"; sha256="099rzl9hy70rmb5fg0vx26mlhr4ra2s0hl3jgv22s8hqpvlmakas"; depends=[cluster MASS mgcv Rtsne]; }; + labdsv = derive2 { name="labdsv"; version="2.1-0"; sha256="1lawc8fm766p7z6kk0c3lda71i8lywg30znzyfkrx94sbr8r5nlr"; depends=[cluster MASS mgcv Rtsne]; }; label_switching = derive2 { name="label.switching"; version="1.8"; sha256="0xwwhn249aibip12yxjwlrpyqj6zvc95zc7n9jf2vjjpashyc3yk"; depends=[combinat lpSolve]; }; labelVector = derive2 { name="labelVector"; version="0.1.2"; sha256="06pqkgn852min2mqhjkia6qqdwkp8cz32lbxzp3a2b8bcggbijn4"; depends=[]; }; labeling = derive2 { name="labeling"; version="0.4.2"; sha256="0rfikd9gy70b8qz87q9axcwv8nmn9mbxfdwypxi0sghpfs9df8p0"; depends=[]; }; - labelled = derive2 { name="labelled"; version="2.10.0"; sha256="02n4r4bizsysnlmxpw86w7zkiqi6aill9dq2nmrn43xzrffy54sy"; depends=[dplyr haven lifecycle rlang stringr tidyr vctrs]; }; + labelled = derive2 { name="labelled"; version="2.11.0"; sha256="1pg5l2c3ai8gkrqryq5xzsal85pljmdzc2ln8k1ak3j4racm5p7d"; depends=[dplyr haven lifecycle rlang stringr tidyr vctrs]; }; labelmachine = derive2 { name="labelmachine"; version="1.0.0"; sha256="18l7argmf7d60cv34w7acjg4bk08nhi2cc5p61sx2zmq28v8nndr"; depends=[yaml]; }; - lablaster = derive2 { name="lablaster"; version="0.0.1"; sha256="02rv3svx5203hrv7cplqh3r7h8706r0nwbiyjijjrmb87774370l"; depends=[ggplot2 magrittr rlang scales smooth]; }; + lablaster = derive2 { name="lablaster"; version="1.0.1"; sha256="082gyfqaakl08d016p7sk1qapdkpry82sbxcsj46z50ls7sza3ab"; depends=[ggplot2 magrittr rlang scales smooth]; }; labourR = derive2 { name="labourR"; version="1.0.0"; sha256="0skr8qr1m849l3gpcsn5bjxyjczlzzmsm2j6xcmxv33lf95qg6gi"; depends=[cld2 data_table magrittr stopwords stringdist]; }; labsimplex = derive2 { name="labsimplex"; version="0.1.2"; sha256="07is5vi1y7qw9fjhhjf65z6fm77v26qgy908zhhp2581qqyn0b5s"; depends=[ggplot2 scatterplot3d]; }; labstatR = derive2 { name="labstatR"; version="1.0.13"; sha256="0da891v97imx3x4d1lq5rbyxrwvsqdgfmgnxwqqlimls66zalh7k"; depends=[]; }; labstats = derive2 { name="labstats"; version="1.0.1"; sha256="1780slp9l1rqwr5ika6hv606jzbaa3g1ywzkjkd3ff2gb0cby3ni"; depends=[]; }; lacm = derive2 { name="lacm"; version="0.1.1"; sha256="01zd4zsas60kzxx4wsnxs6qqc72i4djwj8m7ryjyx5nrxgpjaixc"; depends=[numDeriv statmod]; }; lacrmr = derive2 { name="lacrmr"; version="1.0.5"; sha256="1lkn9hynqviz50h9k69wir4ajpymkdm1cfyg7hankjwnkypjp8rv"; depends=[dplyr httr janitor jsonlite magrittr sjmisc stringr]; }; - lactater = derive2 { name="lactater"; version="0.1.2"; sha256="0y90hzixdqims8dk9a7qkwh6waxgvcmnpnalkfda4iqdvhymlxc6"; depends=[broom dplyr forcats ggplot2 ggtext lubridate magrittr minpack_lm patchwork pracma rlang segmented stringr tidyr]; }; + lactater = derive2 { name="lactater"; version="0.1.4"; sha256="1siyf2hqrxhri1gadvkg9dji7pg28l11h109frksc0lwgy6z7rhk"; depends=[broom dplyr forcats ggplot2 ggtext lubridate magrittr minpack_lm patchwork pracma rlang segmented stringr tidyr]; }; lactcurves = derive2 { name="lactcurves"; version="1.1.0"; sha256="1ksllpgz519gzrs8gwfgg7743vj3j7ikmbwgisdjs77sdxxl7xyz"; depends=[orthopolynom polynom]; }; lacunaritycovariance = derive2 { name="lacunaritycovariance"; version="1.1-5"; sha256="15jyn0ambpknzzh2lblsf20va5rw8vxa29gimjql069qlvaavq00"; depends=[RcppRoll spatstat spatstat_explore spatstat_geom spatstat_random]; }; laeken = derive2 { name="laeken"; version="0.5.2"; sha256="1p3ccbaydlr52p8qmgmm2l6kryvq6jjjx7mqn2vv0gpjaxqhyy92"; depends=[boot MASS]; }; @@ -11767,7 +11934,7 @@ in with self; { languageserversetup = derive2 { name="languageserversetup"; version="0.1.2"; sha256="05i8kcp1zpbkrqpq5vxxvxk9p7phyngxl0q6v76va0i7qnmy1v7a"; depends=[]; }; lans2r = derive2 { name="lans2r"; version="1.2.0"; sha256="0hk7rklkic4frp5w6k9kn5xi8hf3s87bgbjm58ca79sh3iyl0cnv"; depends=[dplyr ggplot2 R_matlab reshape2 rlang tidyr]; }; lar = derive2 { name="lar"; version="0.1-2"; sha256="0qda0y4ag10kg83wxs3z754kc8c1dg2rwciy64klk7an4ln43i5b"; depends=[data_table treemap xlsx]; }; - lares = derive2 { name="lares"; version="5.2.1"; sha256="17dsvjsqzp2v2j1b07vln1xbccbfvn1zr7b2rq4039hx0zmr3wd6"; depends=[dplyr ggplot2 h2o httr jsonlite lubridate openxlsx patchwork pROC rlang rpart rpart_plot rvest stringr tidyr yaml]; }; + lares = derive2 { name="lares"; version="5.2.2"; sha256="0fcdwx8hgrlh7ghgvnp9i4hqr9n79sr1s9r4h7yssf1cyajc6x39"; depends=[dplyr ggplot2 h2o httr jsonlite lubridate openxlsx patchwork pROC rlang rpart rpart_plot rvest stringr tidyr yaml]; }; largeList = derive2 { name="largeList"; version="0.3.1"; sha256="0csijzlxajj0rh24w5n7fs6ss301zr6zfv5khyq4a9g437bwhc2i"; depends=[]; }; lars = derive2 { name="lars"; version="1.3"; sha256="17al1g0pvfz9frs2kxicqr8dyp7ciz3x87yx2l4lqd53ls6nm7n6"; depends=[]; }; lassopv = derive2 { name="lassopv"; version="0.2.0"; sha256="0yawnjw063jypk3riy9xab9cmliv6c9dnabi18670khd3gzb2r9z"; depends=[lars]; }; @@ -11777,7 +11944,7 @@ in with self; { latentcor = derive2 { name="latentcor"; version="2.0.1"; sha256="0c8ygjdqxb9zs6b42ncqh5va80vxamdphja18x8dazygynmcgjr0"; depends=[doFuture doRNG fMultivar foreach future geometry ggplot2 heatmaply MASS Matrix microbenchmark mnormt pcaPP plotly]; }; latentgraph = derive2 { name="latentgraph"; version="1.1"; sha256="11h7nrd81licvdikiwwfkz4x9i7drz09w5ns672b7fw0pj4qqgsr"; depends=[glmnet MASS pracma Rcpp RcppArmadillo]; }; latentnet = derive2 { name="latentnet"; version="2.10.6"; sha256="0zkh75cvsiprxfbrzyqi72wvsljxzsifcd71kyrr2m761v3sqm16"; depends=[abind coda ergm MASS mvtnorm network sna statnet_common]; }; - later = derive2 { name="later"; version="1.3.0"; sha256="0acqg29hcm2iq1418b54np7zb5pnr3xzrwc3ijv2pz9wra10ix88"; depends=[Rcpp rlang]; }; + later = derive2 { name="later"; version="1.3.1"; sha256="1b342khxyvm3qnag36p6yr5nlrqbxqabm9f6qfxwxsmry20xdvi3"; depends=[Rcpp rlang]; }; latex2exp = derive2 { name="latex2exp"; version="0.9.6"; sha256="1jp0l0hi5kv4yh28qg2yj2z5fj33gnfvdz2g2v4ibn516fj2d636"; depends=[magrittr stringr]; }; latexdiffr = derive2 { name="latexdiffr"; version="0.1.0"; sha256="021lhswy8nik2h1951h1affg8x5lchsa2amyx7fwrajp4bgq72yk"; depends=[fs rprojroot]; }; latexpdf = derive2 { name="latexpdf"; version="0.1.7"; sha256="0n0hzr9jkg13kn56jcghcg4a6y8x0c3jffcvxv621azd9ldljgfl"; depends=[]; }; @@ -11787,11 +11954,11 @@ in with self; { latticeDensity = derive2 { name="latticeDensity"; version="1.2.6"; sha256="0l9ypdpy09nnmanj2gvaxzj79s8d9iqwy6rv0rig5fwbqv1y6135"; depends=[sf sp spam spatialreg spatstat spatstat_geom spdep splancs]; }; latticeExtra = derive2 { name="latticeExtra"; version="0.6-30"; sha256="1vcy4xr6c53nbvnxikjnlf5kd3n5hf4d8dzj5d41hj322dlsfl65"; depends=[interp jpeg lattice MASS png RColorBrewer]; }; lava = derive2 { name="lava"; version="1.7.2.1"; sha256="0bpg75w0ri1mkf7cw9gbw1fjpy4mh9h48k019y772xjfgrf1yayl"; depends=[future_apply numDeriv progressr SQUAREM survival]; }; - lavaSearch2 = derive2 { name="lavaSearch2"; version="1.5.6"; sha256="0m5dwfmpcmicrpasx2raac2zylss416bxxgb3mg3abpll89iw9fx"; depends=[doParallel ggplot2 lava MASS Matrix multcomp mvtnorm nlme Rcpp RcppArmadillo reshape2 sandwich]; }; + lavaSearch2 = derive2 { name="lavaSearch2"; version="2.0.1"; sha256="04rd1r4qy1jiqmmda3h1gbihsyva88djq1apfil89v4lqr0za0b8"; depends=[abind doParallel ggplot2 lava MASS Matrix multcomp mvtnorm nlme Rcpp RcppArmadillo reshape2 sandwich]; }; lavaan = derive2 { name="lavaan"; version="0.6-15"; sha256="16zd50wzzlhxfmbxcwd850fp1mh15s81b9j6ihx01czrk7lz6hws"; depends=[MASS mnormt numDeriv pbivnorm quadprog]; }; lavaan_shiny = derive2 { name="lavaan.shiny"; version="1.2"; sha256="0qgswdpxb5af0l3v70sg0jrgsdwr88gz6zzwbk3pw5x6qnvnwb6r"; depends=[lavaan psych semPlot shiny shinyAce]; }; lavaan_survey = derive2 { name="lavaan.survey"; version="1.1.3.1"; sha256="133hpy8s00y6jzwwzl9brdh70w26jycdm3n1c6bcryghwh3ai4xr"; depends=[lavaan MASS survey]; }; - lavaanExtra = derive2 { name="lavaanExtra"; version="0.1.4"; sha256="1lk2bgj1gfp9cfj5wpbgif84imnwpdc55cyh9ajq1g2hr5kzb8xf"; depends=[lavaan]; }; + lavaanExtra = derive2 { name="lavaanExtra"; version="0.1.6"; sha256="0i0cglbj2yyagxmd1wif7ayi6yq2cirhisdyahif2bsfwwjhmlzd"; depends=[insight lavaan]; }; lavaanPlot = derive2 { name="lavaanPlot"; version="0.6.2"; sha256="03icyydr6sv4jkdfdjchsdrscr9lz9q74x5q17cx2iw3383j6lz5"; depends=[DiagrammeR lavaan magrittr stringr]; }; lavacreg = derive2 { name="lavacreg"; version="0.1-2"; sha256="15108y1bxlimcc57c4655wgll23s9dk8zj3j2sqg7rnn3i9kbjc6"; depends=[fastGHQuad pracma Rcpp SparseGrid]; }; lawstat = derive2 { name="lawstat"; version="3.6"; sha256="1bmv3aw4z07ypsb1z65kwdybg6c268vdy46q9nri8xsmrby3fw8b"; depends=[Kendall mvtnorm Rdpack]; }; @@ -11818,7 +11985,7 @@ in with self; { lchemix = derive2 { name="lchemix"; version="0.1.0"; sha256="1g2w57fi6kvsyir14hnxh0v6xwjdnbisafvjxvn1g6a4h55dg9i0"; depends=[MCMCpack mvtnorm]; }; lcmm = derive2 { name="lcmm"; version="2.0.2"; sha256="0jyg8i3df6nj9nkim3va8marg4224zjx55lj3iw7ypbs4hgp8v09"; depends=[marqLevAlg mvtnorm nlme randtoolbox survival]; }; lconnect = derive2 { name="lconnect"; version="0.1.1"; sha256="1lx0z72aiy2hbh0wxn3ni3dyr3s2v8xirkvszlxvgfzkfmjx05j5"; depends=[igraph sf]; }; - lcopula = derive2 { name="lcopula"; version="1.0.5"; sha256="1q45l5k2892ivzwp3h30z02j6w7nf4k4k7xfh22vy8q2zrv718jp"; depends=[copula Rcpp]; }; + lcopula = derive2 { name="lcopula"; version="1.0.6"; sha256="03qf9skls0h2z88ykm863m0w394n24rkxgg0qdjzxyizhv2arf3l"; depends=[copula Rcpp]; }; lcpm = derive2 { name="lcpm"; version="0.1.1"; sha256="0pqmizli5rhyaxvxrjycf8d5kqrm23i3vdz00r8zmijjpiz2p9s2"; depends=[Matrix numDeriv plyr]; }; lcra = derive2 { name="lcra"; version="1.1.2"; sha256="1kyjzb5ss64pg1sdnc8h7npcf4hsfgf4hhqh2yxl50d2zf4a4iyl"; depends=[coda rjags rlang]; }; lcsm = derive2 { name="lcsm"; version="0.3.2"; sha256="13iy0d37rqlw7k6xgb2rsd2pz1rrjbc5c14gqaxgwmz9pk93dlxp"; depends=[broom cli dplyr ggplot2 lavaan magrittr purrr rlang semPlot stringr tibble tidyr]; }; @@ -11843,11 +12010,11 @@ in with self; { leafdown = derive2 { name="leafdown"; version="1.2.0"; sha256="0gpb37yjsjirglndld84bky83yyhy16qfk1wawkfpjv8j9pdfnqf"; depends=[checkmate leaflet magrittr R6 shiny shinyjs]; }; leafem = derive2 { name="leafem"; version="0.2.0"; sha256="13dsgnq90n80y3fz5xgy8sm3jbgzv3zkxxy4y902j0gnxarpiswp"; depends=[base64enc geojsonsf htmltools htmlwidgets leaflet png raster sf]; }; leafgl = derive2 { name="leafgl"; version="0.1.1"; sha256="042jps6zh4xr0xj19a7fbgrcb6q6gsw2q5f191lyskr8iajdrz1h"; depends=[geojsonsf htmltools jsonify leaflet sf]; }; - leaflegend = derive2 { name="leaflegend"; version="1.0.0"; sha256="1f86gcz3dyc1n7d7ja1xb0jgag59x5zqxykfif8viajwl3rbgdfc"; depends=[base64enc htmltools htmlwidgets leaflet]; }; + leaflegend = derive2 { name="leaflegend"; version="1.1.0"; sha256="0jiv3cdkcil1krfzmyp0xa8j4c8vnwrd7vnrzsaqg9mkhcijvll7"; depends=[base64enc htmltools htmlwidgets leaflet]; }; leaflet = derive2 { name="leaflet"; version="2.1.2"; sha256="0fa0f9fcrxbqhmcm45l0byws56d8gg0bi3vx4m65mn4rihg6gn16"; depends=[base64enc crosstalk htmltools htmlwidgets leaflet_providers magrittr markdown png raster RColorBrewer scales sp viridis]; }; leaflet_esri = derive2 { name="leaflet.esri"; version="1.0.0"; sha256="01bwzxh2rdhpvvazaxsji8axl765q1ix1fdxla6i61nvqkpw3dz1"; depends=[htmltools leaflet leaflet_extras]; }; leaflet_extras = derive2 { name="leaflet.extras"; version="1.0.0"; sha256="0li7651cwlz7sg04xdrmvhkrf0n6amaydck7gqz0wkb6wq8hcyzw"; depends=[htmltools htmlwidgets leaflet magrittr stringr]; }; - leaflet_extras2 = derive2 { name="leaflet.extras2"; version="1.2.0"; sha256="0l8bfia5cb3420icvij7yljdg04b9x783x2gnvy5360gmd0c9sqf"; depends=[htmltools leaflet magrittr]; }; + leaflet_extras2 = derive2 { name="leaflet.extras2"; version="1.2.1"; sha256="1jh2vpygx4fnj7s0p5hn1wgpddwffvrsfhv7l5lg4cvaf8xzwvn3"; depends=[htmltools leaflet magrittr]; }; leaflet_minicharts = derive2 { name="leaflet.minicharts"; version="0.6.2"; sha256="0pmgr9c3z5zdm13kb17ldjdl3i792mv20gbxzn1asfyf7csp7jxi"; depends=[htmltools leaflet]; }; leaflet_multiopacity = derive2 { name="leaflet.multiopacity"; version="0.1.1"; sha256="0ynbqjs4gdnjsygzwlczrirhazpq2gl9grzyxvnyl4jcpb3yg7y2"; depends=[htmltools htmlwidgets]; }; leaflet_opacity = derive2 { name="leaflet.opacity"; version="0.1.0"; sha256="19dkl105sf7c9wrpl8kzwsjwwc7r9qb4c1g85w2lavpj0pbyazxw"; depends=[htmltools htmlwidgets]; }; @@ -11864,22 +12031,22 @@ in with self; { learnPopGen = derive2 { name="learnPopGen"; version="1.0.4"; sha256="04wxina3n2bspxdp3d4bgqrwyxqxx46pfp8zgzr3rsj89ml8if9l"; depends=[gtools phytools]; }; learningr = derive2 { name="learningr"; version="0.29.1"; sha256="0z3rs7y9yd81f14sbk3dwq1ifr4vca2s3kl1gnkqlns3dycgyp08"; depends=[plyr]; }; learningtower = derive2 { name="learningtower"; version="1.0.1"; sha256="041hx9a1jq5aw6gbgb1xj8pl9dhc3kb85cx670nkc3ngaj4j2g17"; depends=[dplyr tibble]; }; - learnr = derive2 { name="learnr"; version="0.11.3"; sha256="1bsyhp7fj1plyff4gyfhv29garzysh04krbnj4vvh46f5smvhkah"; depends=[checkmate curl digest ellipsis evaluate htmltools htmlwidgets jsonlite knitr lifecycle markdown promises rappdirs renv rlang rmarkdown rprojroot shiny withr]; }; + learnr = derive2 { name="learnr"; version="0.11.4"; sha256="1m2m2sm8yx2b64y7xqlzx7v1bf8x8sci0miaka6frpd6rn4bsr7f"; depends=[checkmate digest ellipsis evaluate htmltools htmlwidgets jsonlite knitr lifecycle markdown promises rappdirs renv rlang rmarkdown rprojroot shiny withr]; }; learnrbook = derive2 { name="learnrbook"; version="1.0.2-1"; sha256="1m642zwbn10p355s8rhdrh61q9n85mh8xj4jhvramii2f09bzyhn"; depends=[]; }; leastcostpath = derive2 { name="leastcostpath"; version="1.8.7"; sha256="0ivj15g3npwm0wpz6xaa8dj1am9diyvhyhnki8a3qfwsa7qv2n53"; depends=[gdistance gstat Matrix pbapply raster rgdal rgeos sp]; }; ledger = derive2 { name="ledger"; version="2.0.9"; sha256="0ynr1g7vfkabl78zjnshyxixk45g28bi9h1p4zjfl83009yhqjwx"; depends=[dplyr rlang stringr tibble tidyr tidyselect]; }; leem = derive2 { name="leem"; version="0.1.0"; sha256="1sm9v3m95fbg3apvv3jjf47qxn8v6ipdsm1103dqk4zngmsz4xia"; depends=[tkrplot]; }; leerSIECyL = derive2 { name="leerSIECyL"; version="1.0.2"; sha256="1zx28gpnys9mmhq7wwljfnq92wj1h1vxgqiirnfmn36z942nvmxl"; depends=[RCurl]; }; - lefko3 = derive2 { name="lefko3"; version="6.0.0"; sha256="0iqbdlcm57bdyrmhgy9ysmn2wyc9f86zwdj8159l18zv3ls7x51h"; depends=[BH glmmTMB lme4 MASS Matrix MuMIn pscl Rcpp RcppArmadillo VGAM]; }; + lefko3 = derive2 { name="lefko3"; version="6.0.5"; sha256="1gpmz6c26qzsgbp07y53ljbw795zaq17miqbba7cdqdspq6ir6kv"; depends=[BH glmmTMB lme4 MASS Matrix MuMIn pscl Rcpp RcppArmadillo VGAM]; }; legion = derive2 { name="legion"; version="0.1.2"; sha256="0463a743n6k21v6nyacmp2li9dngaaww9lh83150621s7pdycw3s"; depends=[generics greybox nloptr Rcpp RcppArmadillo smooth zoo]; }; legislatoR = derive2 { name="legislatoR"; version="1.1.0"; sha256="12ij2xqasc4j7gx79wzbdg3wvg8dn9azj0qj61s4c6ficyr0x0bv"; depends=[curl dplyr]; }; legocolors = derive2 { name="legocolors"; version="0.3.1"; sha256="0ds9c2x0x590yk7mrjm4hh7k72p51slssg7jlprd71mw6hry91ma"; depends=[]; }; - lehdr = derive2 { name="lehdr"; version="1.0.1"; sha256="0hg5a4w37wi6bqks2298ajsj8q6y3lvbx80wwg5364vnv7na3308"; depends=[dplyr glue httr rappdirs readr rlang stringr]; }; + lehdr = derive2 { name="lehdr"; version="1.1.1"; sha256="0sal2qh2rcl4mkdh9a9zy6ixxb99gax04ldawrp091kzwscng9yz"; depends=[dplyr glue httr rappdirs readr rlang stringr]; }; leiden = derive2 { name="leiden"; version="0.4.3"; sha256="0f09k3mhb0di2cz1q95y6qd3rqh7xdybn0dpnd4ifqhfhr5lnika"; depends=[igraph Matrix reticulate]; }; leidenAlg = derive2 { name="leidenAlg"; version="1.0.5"; sha256="1z96zrsms93gspylmficaggb0xj94kq9rg3p2svdbb451jbga9an"; depends=[igraph Matrix Rcpp RcppArmadillo RcppEigen sccore]; }; - leidenbase = derive2 { name="leidenbase"; version="0.1.14"; sha256="0z90fxlcpzxia97im6wgpcs2zliy9329q0vmsxl3lbsgh302zpvq"; depends=[igraph]; }; + leidenbase = derive2 { name="leidenbase"; version="0.1.18"; sha256="1zfvs0vsalcqh8dc0kmd38fjrcah3l212qc9hvl9hz79phishvxm"; depends=[igraph]; }; leiv = derive2 { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; }; - lemna = derive2 { name="lemna"; version="1.0.0"; sha256="1dm6kcbjkh12c7aa0kmygwj5vv61gmpmh06j0jsg0h7ys8hrdhjq"; depends=[deSolve ggplot2 gridExtra]; }; + lemna = derive2 { name="lemna"; version="1.0.1"; sha256="13ldgkzd1ggmqzipic9lw14zxq57zdzh1s83ih2mfib1n8f0pwg2"; depends=[deSolve ggplot2 gridExtra]; }; lemon = derive2 { name="lemon"; version="0.4.6"; sha256="0v1kbyk64yzsk92h6yq03kp9alc9632qprznsws61r8firiskim5"; depends=[ggplot2 gridExtra gtable knitr lattice plyr scales]; }; lenght = derive2 { name="lenght"; version="0.1.0"; sha256="0w7r5rizif2g6dg5ldcdnd0lj1s6v2z46w9j9g0zdlidx83a8vdn"; depends=[]; }; lenses = derive2 { name="lenses"; version="0.0.3"; sha256="08akwzlc5gk2rxbh9xp67n5ahdcld60932ascczjv0accrkxizhk"; depends=[magrittr rlang tidyselect]; }; @@ -11888,7 +12055,8 @@ in with self; { leri = derive2 { name="leri"; version="0.0.1"; sha256="1309v58xdw3p6y2wpnl64vgsds5kvfiary2a3fa041kz23jzbp3c"; depends=[ncdf4 raster]; }; lero_lero = derive2 { name="lero.lero"; version="0.2"; sha256="03ll7jzcay0swwpmxyf0y9k2h8mxx4p5v3ggm9dgdz4j99934l70"; depends=[]; }; less = derive2 { name="less"; version="0.1.0"; sha256="1pgixa04rjngfg0yhxyg4qhd6g0pj8zyb3q8mfa3fjxzpywdy70a"; depends=[caret e1071 FNN MLmetrics pracma R6 randomForest RANN rpart wordspace]; }; - lessR = derive2 { name="lessR"; version="4.2.8"; sha256="0vh7qqzk8fzf1hhc4kcx76iybppwqw1icim3c5gagbwzkdk4r61y"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny]; }; + lessR = derive2 { name="lessR"; version="4.2.9"; sha256="0xl26bbp4ksqqp769vgc591rvw9h9ivvm94cwk0nq06vy8v4fgxp"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny]; }; + lessSEM = derive2 { name="lessSEM"; version="1.4.16"; sha256="1zv438w3mbp6yxqcy2xcs5sfm64ilnqsk0vvslda54an95lj96kj"; depends=[ggplot2 lavaan numDeriv Rcpp RcppArmadillo RcppParallel rlang stringr tidyr]; }; lest = derive2 { name="lest"; version="1.1.0"; sha256="1d69kvdl31crv4ik8bwylq3s3f4skzrjc4x49c79w443g64n2jp9"; depends=[]; }; lestat = derive2 { name="lestat"; version="1.9"; sha256="1skxymdf3ncmdbskh7711xxgwsmwxfxnl52gcgw06jscx6s6wrsd"; depends=[MASS]; }; letsR = derive2 { name="letsR"; version="4.0"; sha256="07l1wgwnkqnvh47ssg62vj88vgml52n0934w00pjxdk90kk3c5zs"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; @@ -11897,7 +12065,7 @@ in with self; { lexicon = derive2 { name="lexicon"; version="1.2.1"; sha256="0x7rscsh6par2lj11sby7bmz41cxn63iiw51lgh29z09cg8j606c"; depends=[data_table syuzhet]; }; lexiconPT = derive2 { name="lexiconPT"; version="0.1.0"; sha256="0w53gnr29nzc1ib54rnxdycs0c5f7vpv586qmvxxzy4ar16kisaq"; depends=[]; }; lfactors = derive2 { name="lfactors"; version="1.0.4"; sha256="1r8qlwj3zsm233jfx9ag0q5g1knvjmbwl3785pwcd12zi6f68dcc"; depends=[]; }; - lfc = derive2 { name="lfc"; version="0.2.2"; sha256="01qf9jizfrr5nvn1b1arhmmbkrvba7krm0r04b7vrqc30m79iikx"; depends=[]; }; + lfc = derive2 { name="lfc"; version="0.2.3"; sha256="1fh3i5mhzgz8k6y32m2y7lilxvm10kjkp5b70zm06iygazsk8bvz"; depends=[]; }; lfda = derive2 { name="lfda"; version="1.1.3"; sha256="0sk409jx4chs2wzhpfw7rlg9pwpdqg32ncfl3w243ypq73jq0qv3"; depends=[plyr rARPACK]; }; lfe = derive2 { name="lfe"; version="2.9-0"; sha256="0g12097a6vyv5vx51vfp04nkfzlx80j6ksvpfjv6b36r9bbrr6kw"; depends=[Formula Matrix sandwich xtable]; }; lfl = derive2 { name="lfl"; version="2.2.0"; sha256="02kd7fz12v6xl1f3lv7kkxccln4fm8dmvbn7m9prbiawrbmy16dx"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; }; @@ -11907,14 +12075,13 @@ in with self; { lgarch = derive2 { name="lgarch"; version="0.6-2"; sha256="05xksc4d6dbf5ls4lf2gpk9xyi99fikr7dva88b84rfgads1yhrh"; depends=[zoo]; }; lgcp = derive2 { name="lgcp"; version="1.8-2"; sha256="0q7w95gpvdzlli60dgpixl0rn05f4707xwyw215dsrc1z8znyk73"; depends=[fields iterators maptools Matrix ncdf4 raster rgeos rpanel sp spatstat_explore spatstat_geom spatstat_utils]; }; lglasso = derive2 { name="lglasso"; version="0.1.0"; sha256="0qkmlr7gfbw9m403676p4ip4hn2v2ll1jcwj5vhshcyb5whsr866"; depends=[glasso]; }; - lgpr = derive2 { name="lgpr"; version="1.1.5"; sha256="03wf6n3agls48r1a82aw6sywj3hzs0pza29l3p68nlqlkf9amnnw"; depends=[bayesplot BH ggplot2 gridExtra MASS Rcpp RcppEigen RcppParallel RCurl rstan rstantools StanHeaders]; }; + lgpr = derive2 { name="lgpr"; version="1.2.3"; sha256="1wzjkc4k3ly6j9jfsr71qm2j0frf0n67ndlaibf3f6yfwv535qmq"; depends=[bayesplot BH ggplot2 gridExtra MASS Rcpp RcppEigen RcppParallel RCurl rstan rstantools StanHeaders]; }; lgr = derive2 { name="lgr"; version="0.4.4"; sha256="09x1vw6cnc1c0p0ylcz1q1vcxyaf1kljhh7ni3gl5jm19zii2h4c"; depends=[R6]; }; lgrExtra = derive2 { name="lgrExtra"; version="0.0.8"; sha256="19qg67mjq0n5zbrcfhjhxfwl1jlq11iblhczl3m22n2nplpi70q8"; depends=[data_table lgr R6]; }; lgrdata = derive2 { name="lgrdata"; version="0.1.1"; sha256="0h1crdhqfp6hzx30lp0w015scf2566hhrl2i7mkxy868rkl3aig9"; depends=[]; }; lgtdl = derive2 { name="lgtdl"; version="1.1.5"; sha256="1sixq56d2px36q0xq3kl0zwj2yzm3q8fhgqjvmajcdd5jl8l7130"; depends=[]; }; lhmixr = derive2 { name="lhmixr"; version="0.1.0"; sha256="1c4ydgq1z2y0xk8xqdsim6xvgxdbl3gglfk5kcr9k4m01arvv0rf"; depends=[]; }; lhs = derive2 { name="lhs"; version="1.1.6"; sha256="0gyjdic714pqvq2jv1v0vh7hl9s83sg2zxx2gdkp38z6xx2cwzz3"; depends=[Rcpp]; }; - liGP = derive2 { name="liGP"; version="1.0.1"; sha256="01yhrzx67gz7j201mkv1aracrvjh4hxkrc7jn48cfwz0dp1lznws"; depends=[doParallel foreach hetGP laGP]; }; liayson = derive2 { name="liayson"; version="1.0.5"; sha256="1h3xyy40zvmllqlskgnmm755m0xds66hgpgk48zc9i2i3qj6165j"; depends=[ape arules biomaRt distances e1071 gplots matlab phangorn plyr proxy RColorBrewer]; }; libbib = derive2 { name="libbib"; version="1.6.4"; sha256="1jcdsvg5xgc7yzdc00k2brsiviyzflsdgiyk77icw08bwlbxh9mk"; depends=[curl data_table pbapply stringr xml2]; }; libcoin = derive2 { name="libcoin"; version="1.0-9"; sha256="1syrcdj5qg5m3zd3dlxgpfklswbalfg42w058dr09hnzqsvx0z9d"; depends=[mvtnorm]; }; @@ -11924,9 +12091,9 @@ in with self; { librarysnapshot = derive2 { name="librarysnapshot"; version="0.1.2"; sha256="0v4x564zpm58kxs5n84bi6mcjhbzjg6a2lc30vsc8kbm3qy0nq38"; depends=[]; }; libstableR = derive2 { name="libstableR"; version="1.0.2"; sha256="1gkcgbc8a7ks9x8mqmlz98hk55q3qy62izam7csz1s0r5dzsyqcr"; depends=[Rcpp RcppGSL]; }; lidR = derive2 { name="lidR"; version="4.0.3"; sha256="13b7bf4dnhmq9p2ba6c5wfz27ac37sa4nzzmqc30v8z95a1kwfvr"; depends=[BH classInt data_table glue lazyeval raster Rcpp RcppArmadillo rgl rlas sf sp stars terra]; }; - lidaRtRee = derive2 { name="lidaRtRee"; version="4.0.3"; sha256="076gf94kf1m7nxmwacd3fqqq09qn6lrpzm0535mmx0cb0cwy8vga"; depends=[car gvlma imager leaps lidR reldist sf terra]; }; + lidaRtRee = derive2 { name="lidaRtRee"; version="4.0.5"; sha256="1a3c0lmmg3my5rwaq30gcg3jhrd1dndlsa49dgav3gv9l214ri3w"; depends=[car gvlma imager leaps lidR reldist sf terra]; }; lifeR = derive2 { name="lifeR"; version="0.9.6"; sha256="1f52qg4h2vh2q52g1fwi49qq3rkd788xz0z4q47jzkjhswj39asr"; depends=[curl dplyr ggmap ggplot2 jsonlite knitr readr rmarkdown stringr]; }; - lifecontingencies = derive2 { name="lifecontingencies"; version="1.3.9"; sha256="192frkdk7y2v4611ln8b9jb2aaxpaklar4yi63yd60p69dc7s7nx"; depends=[markovchain Rcpp]; }; + lifecontingencies = derive2 { name="lifecontingencies"; version="1.3.10"; sha256="1nkkb3qq2mqc25x8lg9r0xmkdnfr9j8q6rx3cgy6kx94qwqp8yma"; depends=[markovchain Rcpp]; }; lifecourse = derive2 { name="lifecourse"; version="2.0"; sha256="1m8ihqvzhzpq2m2pdvh37bpq9pdbj23r3y0jkl3q8farh3qj473d"; depends=[TraMineR]; }; lifecycle = derive2 { name="lifecycle"; version="1.0.3"; sha256="1hk9mblhap429fk77qpgc4hv0j91q5wpahi0y76w118m471zsnb4"; depends=[cli glue rlang]; }; lifelogr = derive2 { name="lifelogr"; version="0.1.0"; sha256="1wygvw61ygpww0kahxhmjdncwg4zc2cshs0brzw18nfqaj8vpfav"; depends=[dplyr fitbitScraper ggplot2 lazyeval lubridate modelr plyr R6 shiny stringr tibble tidyr]; }; @@ -11941,7 +12108,7 @@ in with self; { likelihood = derive2 { name="likelihood"; version="1.9"; sha256="0w9p2vzrcln6a35b8pmlli01vq67vdbp4cnc9hb256syldsj7pp4"; depends=[nlme]; }; likelihoodAsy = derive2 { name="likelihoodAsy"; version="0.51"; sha256="0qxwdf6npyj926zd2pbfscgz1z01hwgm6099h882d2l1sim2j9g7"; depends=[alabama cond digest nleqslv pracma Rsolnp]; }; likelihoodExplore = derive2 { name="likelihoodExplore"; version="0.1.0"; sha256="13cnql7pbx8qq1j3cfb3lkzzf2k55shpfa0jd00z30ys6imxzcfn"; depends=[lazyeval plyr]; }; - likelihoodR = derive2 { name="likelihoodR"; version="1.1.0"; sha256="1mbadd9lg7h4g39vg0g86qjd5nx5j87jgkzdflcvnja0f3dxph5b"; depends=[]; }; + likelihoodR = derive2 { name="likelihoodR"; version="1.1.1"; sha256="0m85jks9ymaly79nk453fc2bs85c6ihn9bbwkmi0q6k9s9p6j4kh"; depends=[lme4]; }; likert = derive2 { name="likert"; version="1.3.5"; sha256="0c4irxs7pp1z8nj4s8cq23daw4h94n3h7x4f6q1d85614qcl9l3p"; depends=[ggplot2 gridExtra plyr psych reshape2 xtable]; }; lilikoi = derive2 { name="lilikoi"; version="2.1.1"; sha256="14bz7a1wcgr5fsf6mpsibxa7ks302a1lwnjdjzwh72z490fz8gaw"; depends=[car caret dplyr gbm ggplot2 glmnet h2o impute infotheo limma M3C Metrics MLmetrics pathview plyr preprocessCore princurve pROC RCy3 reshape reticulate RWeka scales stringr survival survminer]; }; lillies = derive2 { name="lillies"; version="0.2.10"; sha256="0czcgmx0v5ryw6xd2a3nkxb4qgpza35v9laqv491dxhjh7i8di2k"; depends=[ddpcr dplyr knitr pracma progress rlang survival tidyr]; }; @@ -11954,11 +12121,11 @@ in with self; { lin_eval = derive2 { name="lin.eval"; version="0.1.2"; sha256="05saxzzwh3gs6a4ii63n5kjm06p399xkyrjnqvn9f164322p7pwb"; depends=[broom]; }; linERR = derive2 { name="linERR"; version="1.0"; sha256="1mhiyqfpwagg161ncp5ndd22hlh12qzr360nms13rgyd8a077cq7"; depends=[survival]; }; linbin = derive2 { name="linbin"; version="0.1.3"; sha256="04x97ah45qljpa4kg1iqz85w0q7936n4sq7vbzk2mx5m87p83czh"; depends=[]; }; + lincom = derive2 { name="lincom"; version="1.0"; sha256="1jq2rpbp9bih4brqyx7fhqr42l9icwg3y8dzd64a2vj973pxabb2"; depends=[Matrix Rmosek SparseM]; }; linconGaussR = derive2 { name="linconGaussR"; version="0.1"; sha256="10l7qajqa8f8yq3zbjmjxf0va2krq1rab42ihfhz2jyv3mn24xsi"; depends=[MASS Rcpp RcppArmadillo]; }; lindia = derive2 { name="lindia"; version="0.9"; sha256="1qma8wr0fkwx03x971crkh8cfc8z4374py1r1wvszj9wzi4vfp5r"; depends=[ggplot2 gridExtra MASS]; }; linea = derive2 { name="linea"; version="0.1.1"; sha256="1p3wd3m239x37hd4g4gp4nbgf4jlwk9lx0a00781jx7h2gcg32s7"; depends=[car dplyr ggplot2 gtrendsR lubridate magrittr openxlsx plotly purrr RColorBrewer readr readxl reshape2 sjmisc stringr tibble tidyr tidyverse tis zoo]; }; linearModel = derive2 { name="linearModel"; version="1.0.2"; sha256="032liplyjw7n0ylvpqv038pf8sbfbcz58zka5rr76cvh2xzf87vg"; depends=[]; }; - linearQ = derive2 { name="linearQ"; version="2.0"; sha256="0sx7bx0x1k193day5w1dbmc09kn5741pcilxijjn2y5aijhd5wk9"; depends=[Rcpp stepR]; }; lineartestr = derive2 { name="lineartestr"; version="1.0.0"; sha256="0bzsywk97j2mmsi7pj9267za1q2601crynh9kszwj6xjbg08nvsm"; depends=[dplyr forecast ggplot2 Matrix readr sandwich tidyr viridis]; }; linelist = derive2 { name="linelist"; version="0.0.1"; sha256="182dsc5sm4ac0wpbcs29sfdvjqz0mpfk34j2qapbi5cn194x7rj9"; depends=[checkmate]; }; linemap = derive2 { name="linemap"; version="0.2.0"; sha256="04nb0hmmikksp7ak4vdam9r2dpv7w3r5wkxxbjr7yk9pfq5gjncp"; depends=[sf]; }; @@ -11967,7 +12134,7 @@ in with self; { lineupjs = derive2 { name="lineupjs"; version="4.6.0"; sha256="198a87hhn1f77ix3mrv8mi04qxlv392aw1cg852h8s6sr2ayxqgl"; depends=[htmlwidgets]; }; lingglosses = derive2 { name="lingglosses"; version="0.0.6"; sha256="1sgf0rag150cc1qsvinbjags9pxj8pxxvq1qfhxm3wb93bqc86l3"; depends=[htmltools kableExtra knitr rmarkdown]; }; lingmatch = derive2 { name="lingmatch"; version="1.0.5"; sha256="1jcbqlla0qdlx2gv1cc2ma8lg7rl30djyqp6mfmd93dfhqr9mr0g"; depends=[Matrix Rcpp RcppParallel]; }; - lingtypology = derive2 { name="lingtypology"; version="1.1.12"; sha256="0as9v3iwnmmdv9gjykkmxs0i2d4n13blf3lwx5kgmbbm272sikqs"; depends=[jsonlite leaflet leaflet_minicharts stringdist]; }; + lingtypology = derive2 { name="lingtypology"; version="1.1.14"; sha256="0vkl5mi7vmc44njbvlzv53b13x4lyf2y1xv4xy211q8l6c215i6a"; depends=[jsonlite leaflet leaflet_minicharts stringdist]; }; linguisticsdown = derive2 { name="linguisticsdown"; version="1.2.0"; sha256="1y2g8h0p4q4mjrawzyprsdw8ynqcbpnjypyhdaf03pcwqglcirkl"; depends=[DT knitr magrittr miniUI rstudioapi shiny stringr]; }; link2GI = derive2 { name="link2GI"; version="0.5-2"; sha256="0a05ahkrg7587l9kpfky7hjvwry1xiiw9dmzqmhg31bc6js6hg61"; depends=[devtools R_utils roxygen2 sf stringr terra xml2]; }; linkcomm = derive2 { name="linkcomm"; version="1.0-14"; sha256="15xm4c7sqpid1vjra250dnvdx98qgzbzmvaycf3zqqnqcmy5bw9n"; depends=[dynamicTreeCut igraph RColorBrewer]; }; @@ -12005,14 +12172,14 @@ in with self; { liureg = derive2 { name="liureg"; version="1.1.2"; sha256="1zhc5fs47whjvvwwiivykxfchzbjbldyvdmqh9rp7ccwba2q3956"; depends=[]; }; live = derive2 { name="live"; version="1.5.13"; sha256="1s6yrbwlc4wqszl2yvy1x6d93my18ba8sm8pwfy547cd1x055vig"; depends=[breakDown data_table dplyr e1071 forestmodel ggplot2 gower MASS mlr shiny]; }; livechatR = derive2 { name="livechatR"; version="0.1.0"; sha256="1k0z6q3s9iw962m1lwlx45p95flzl5jg1xh6ng426v9jh1yyrbb2"; depends=[data_table dplyr jsonlite magrittr purrr]; }; - liver = derive2 { name="liver"; version="1.13"; sha256="18hwbsgjm0fb98m9gmdq92v83gjj7nl3qlv6zcrwjncsf689pxyk"; depends=[class ggplot2]; }; + liver = derive2 { name="liver"; version="1.14"; sha256="1rbj8cjd1ir7qzs4981g3z648a9kaaq8bz0wggrmd38gpbvc2f8p"; depends=[class ggplot2]; }; ljr = derive2 { name="ljr"; version="1.4-0"; sha256="0jby94ml8w6pwnxbmv6qfjww2myvvnn9vrmlqpdh71dhgp3z35py"; depends=[]; }; llama = derive2 { name="llama"; version="0.10.1"; sha256="1rw4lbz172hwb24r424qq86bw7m3xxl66k474wx1scpcrsix2nzw"; depends=[BBmisc checkmate data_table ggplot2 mlr parallelMap plyr rJava]; }; llbayesireg = derive2 { name="llbayesireg"; version="1.0.0"; sha256="0jhkmrjkqfm1flwsbpv6060j6g7cj4ngm0drvrlvsiqpni0k96mh"; depends=[coda ggplot2 llogistic MASS MCMCpack Rcpp rstan StanHeaders]; }; llogistic = derive2 { name="llogistic"; version="1.0.3"; sha256="0wfszgcdi0i3lsm7gsih6a411v353c2gpbg3f06n6c2n35939lsl"; depends=[]; }; lm_beta = derive2 { name="lm.beta"; version="1.7-2"; sha256="0r3j0y1fg6sffkab4r6pxjs6r7bysqddmk2mqbh5ym36f1g4q54i"; depends=[xtable]; }; lm_br = derive2 { name="lm.br"; version="2.9.6"; sha256="1gy6j7fk8maa98c0srx03jsjrhj8gcxq32gszxh95zl268hnyspy"; depends=[Rcpp]; }; - lmDiallel = derive2 { name="lmDiallel"; version="0.9.5"; sha256="1hgd4j5f23b4am8d8ljnvks9jzcy0z592np0j2kfjpiwca1zl31w"; depends=[multcomp plyr sommer]; }; + lmDiallel = derive2 { name="lmDiallel"; version="1.0.1"; sha256="01z4lx9i7mz8wy6znwiqyygngqcf0ymbcpsshxykh1hcy4hsh4r6"; depends=[multcomp plyr sommer tidyr]; }; lmForc = derive2 { name="lmForc"; version="0.1.0"; sha256="0v1r7yv0i3sc6cii78d9f9d3a6rvpvwrs6k3byi825r497xjgw3j"; depends=[]; }; lmPerm = derive2 { name="lmPerm"; version="2.1.0"; sha256="1ss2hcfxqvfq4n6hypv7jp0n0apby9payxzaswaysr5368lkidn3"; depends=[]; }; lmQCM = derive2 { name="lmQCM"; version="0.2.4"; sha256="1qblf2j51zr0ajf0zp0b0xhj9jclnhj4r6nsz3b5fqwj6h2cqkxv"; depends=[Biobase genefilter progress]; }; @@ -12020,9 +12187,10 @@ in with self; { lmap = derive2 { name="lmap"; version="0.1.1"; sha256="0d9blb8hgq2b3klczml74sgpkzbg8v4kn5mzvmip50s1bkk0brfz"; depends=[dplyr ggforce ggplot2 ggrepel nnet tidyverse]; }; lmboot = derive2 { name="lmboot"; version="0.0.1"; sha256="1v7a3vlv0187mpg3y3pj7f3pbk1v5n6amw732chy10vdw5nmfkwd"; depends=[evd]; }; lmds = derive2 { name="lmds"; version="0.1.0"; sha256="130azb0nc2wwxv0qi8v5s4rd02p9lc92zwn634pv7b8awbw81i65"; depends=[assertthat dynutils irlba Matrix]; }; - lme4 = derive2 { name="lme4"; version="1.1-32"; sha256="0j03qn6l8zxlwnrkr1vyrgfcczf1wkrmczyvf3ncd5ad72jcnijy"; depends=[boot lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; - lmeInfo = derive2 { name="lmeInfo"; version="0.3.1"; sha256="0hb6isz91v4jck0aaikzs8fiisy6fg98mrnhhdy8f9m2g3vcp54x"; depends=[nlme]; }; + lme4 = derive2 { name="lme4"; version="1.1-33"; sha256="0409nhvdkkh571gdi9w21z6szkgnmj4sssw3988idh5wgknsamnr"; depends=[boot lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; + lmeInfo = derive2 { name="lmeInfo"; version="0.3.2"; sha256="11sqfb9bj7npngli4h0mzjd2pqjjkza2zmq4b9g2fhmm9r2b0zvd"; depends=[nlme]; }; lmeSplines = derive2 { name="lmeSplines"; version="1.1-12"; sha256="140l95c6yys2rdpyh7clqx4x4qfd4w36hpz6jkb2ygbh90ikzi2r"; depends=[nlme]; }; + lmerPerm = derive2 { name="lmerPerm"; version="0.1.9"; sha256="1z69qr8nz89f4qbkyjs4n171yz9g6znxkgykrn0k3qbd3d7r9jds"; depends=[lmerTest]; }; lmerTest = derive2 { name="lmerTest"; version="3.1-3"; sha256="1zd8gqjkazhxgpnnr484xwsq30p62fq8592nzyc171zjyplpbaim"; depends=[ggplot2 lme4 MASS numDeriv]; }; lmeresampler = derive2 { name="lmeresampler"; version="0.2.4"; sha256="0y9bawakxyqxdmx74jsyrg3mgiwb22h8pskp4wzv99fl2dp3bfhs"; depends=[dplyr forcats ggdist ggplot2 HLMdiag magrittr Matrix nlmeU purrr statmod tibble tidyr]; }; lmf = derive2 { name="lmf"; version="1.2.1"; sha256="1vrwshzaxq1vxin5f2hsp1vngn891y5nvvmhag26xbczc526gmac"; depends=[]; }; @@ -12035,10 +12203,11 @@ in with self; { lmom = derive2 { name="lmom"; version="2.9"; sha256="145va4dhl767mywk36xcmqilm21sfkqhcqi0s07qgq3k39sn4gin"; depends=[]; }; lmomPi = derive2 { name="lmomPi"; version="0.6.2"; sha256="0k1clrl3pbbnjaz1yp5syzdvy64zz1q1nd3xsbacwrl0q865xs3n"; depends=[lmom stringr]; }; lmomRFA = derive2 { name="lmomRFA"; version="3.5"; sha256="1cgwal38r139h18sqrrmvylvasn4v8q82fgp7kg8vk6m1dp5q0vf"; depends=[lmom]; }; - lmomco = derive2 { name="lmomco"; version="2.4.7"; sha256="1hn74zj7c165qsq1icgx9qvdmgxxh4hhn062k7xnvm5yh94g4nvz"; depends=[goftest Lmoments MASS]; }; + lmomco = derive2 { name="lmomco"; version="2.4.9"; sha256="0y14zwwg5nnskjpjm9b1d12694c33x6micmshxwwdyl3d1pysqvh"; depends=[goftest Lmoments MASS]; }; lmreg = derive2 { name="lmreg"; version="1.2"; sha256="02a4nqqcfkjlq21mpk8abd4lj4ib2nps3ndf7zgmzygkd1z0df18"; depends=[MASS]; }; lmridge = derive2 { name="lmridge"; version="1.2.2"; sha256="1lngzhxgjdg4j2bxi680zdsj0ambrpn23v2ib0mbilscbv3p8701"; depends=[]; }; lmtest = derive2 { name="lmtest"; version="0.9-40"; sha256="15yr2kx08wy085bnziqmj1p6hf9mg3qp2a8465jk2df6di6hsh34"; depends=[zoo]; }; + lmtestrob = derive2 { name="lmtestrob"; version="0.1"; sha256="1637x7wp2kb97xbllyd0kwxszcjlajfr0c9qa956cn6fdk9yi61d"; depends=[MASS]; }; lmtp = derive2 { name="lmtp"; version="1.3.1"; sha256="1j5a9hnplvbnw1y4v9hp3ghb3wyyjkbdhym7ram63iz70fczflsl"; depends=[checkmate cli data_table future generics nnls origami progressr R6 SuperLearner]; }; lmviz = derive2 { name="lmviz"; version="0.2.0"; sha256="0sl2k02m5bxkb4jg8y666ln0xxhr4dhsfz9hlp55p9smlhycl5s2"; depends=[car lmtest MASS mgcv rgl scatterplot3d shiny shinyjs]; }; lmw = derive2 { name="lmw"; version="0.0.1"; sha256="0v5p7886q6gy0m3cqq01r3cwbjpwypg3m0hqxjbrpsbfgzvi7phv"; depends=[backports sandwich]; }; @@ -12046,7 +12215,6 @@ in with self; { lnmCluster = derive2 { name="lnmCluster"; version="0.3.1"; sha256="1y5zf2m4kgysm15xnbd1zc21svif2mxpm1zla4nhg68hljl41j8s"; depends=[foreach gtools MASS mclust pgmm Rcpp stringr]; }; loa = derive2 { name="loa"; version="0.2.48.1"; sha256="0685xhswhmn05jxn5q11g1h767vv7l0f9wmlqqrk6wvnagf3nbdn"; depends=[lattice MASS mgcv OpenStreetMap plyr png RColorBrewer rgdal RgoogleMaps sp]; }; loadeR = derive2 { name="loadeR"; version="1.1.6"; sha256="0zkwq704q8n8rrrgf961axgv1jjnwl34aiz7axw0rdm98c9hrpvh"; depends=[caret colourpicker config data_table DT echarts4r golem htmltools htmlwidgets readxl rlang shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs writexl]; }; - loadflux = derive2 { name="loadflux"; version="0.0.2"; sha256="08lbpd0nwwck36bkklmqx62lyj9p1ywwk80v1qx7f6zhgfjx8pj4"; depends=[dplyr dygraphs ggplot2 lubridate rlang tidyr tsibble xts zoo]; }; loadings = derive2 { name="loadings"; version="0.3.1"; sha256="1b6i7dvzwpkqw1ak5slbgb6n27algl4x66y6ifr611bid090vd91"; depends=[geigen]; }; loadr = derive2 { name="loadr"; version="0.1.3"; sha256="01nsjsv7c8grsizfisczqwjrz5saff0pgn7716ig4i8nzargvz7a"; depends=[]; }; loadshaper = derive2 { name="loadshaper"; version="1.1.1"; sha256="10fypkybqi6kpvxcrwsvzczqc11mihyj5f1d3jhd22s8llm8k0gc"; depends=[]; }; @@ -12090,13 +12258,13 @@ in with self; { logib = derive2 { name="logib"; version="0.1.2"; sha256="09c528wrgyk0cg1flx2fsl53q4v9442rr44g9kh5jznqs788608b"; depends=[lubridate readxl]; }; logicDT = derive2 { name="logicDT"; version="1.0.3"; sha256="0bgbllrvjlrhr2cb65z741m07vpk02y7vwmxi2whivwfdnxqw0dc"; depends=[glmnet]; }; logihist = derive2 { name="logihist"; version="1.0"; sha256="1q3322rh3g31c5i80aw54pln0m1jgxmbx30cn31nlh3ijkvnpq9a"; depends=[ggplot2]; }; - logistf = derive2 { name="logistf"; version="1.24.1"; sha256="0qd64sz8cj7s200fq00phjw6bfy8y7ys1bv3lcdj5wzp9h2xkq77"; depends=[formula_tools mgcv mice]; }; + logistf = derive2 { name="logistf"; version="1.25.0"; sha256="0w78jsynw5jh3l9r3ssjs8rza6givgrxzwnb5jwazcm8637d6gix"; depends=[formula_tools Matrix mgcv mice]; }; logistic4p = derive2 { name="logistic4p"; version="1.5"; sha256="0h0dxyklqc95ykyril1a3d2bdnszj5l9dqbxzh2wbfmk06prvh8b"; depends=[MASS]; }; logisticPCA = derive2 { name="logisticPCA"; version="0.2"; sha256="07ikyn127ld0fjdw7x911wrswqwqpw4lbcz0iffvh6jfjkgyk341"; depends=[ggplot2]; }; logisticRR = derive2 { name="logisticRR"; version="0.3.0"; sha256="0i9x7rynxcybdnjqbjsny8jsl96mivzdazdgmcg72qrv8qfwpszl"; depends=[nnet]; }; logitFD = derive2 { name="logitFD"; version="1.0"; sha256="0jl9x7ssh0lbb7r68l7nkyvbmmrsxfvpfjg9q6wa225xvz1i6yzh"; depends=[expm fda fda_usc pROC]; }; logitnorm = derive2 { name="logitnorm"; version="0.8.38"; sha256="01svs20dr0f1h66j5vn3ychjlgwzak96f8p9lmzd29anjlkm9x9q"; depends=[]; }; - logitr = derive2 { name="logitr"; version="1.0.1"; sha256="0brb0h39mwjmi249vqngggwlgr0fkz9zy6m68v97fvy2vxiwv5x7"; depends=[generics MASS nloptr randtoolbox tibble]; }; + logitr = derive2 { name="logitr"; version="1.1.0"; sha256="0sk93j5mbpmll2vgl7s86siy1960wp9dj945dgc90ndbwmq2gj62"; depends=[generics MASS nloptr randtoolbox tibble]; }; loglognorm = derive2 { name="loglognorm"; version="1.0.2"; sha256="0ha1b7hl86486v38ap9rm71wwvg95szqx5rb5q097vm6dl091qcr"; depends=[]; }; logmult = derive2 { name="logmult"; version="0.7.4"; sha256="1k9izgna3bfi8gvnpks85gj3zv3lp35991ml58q7pcqqr78giii2"; depends=[gnm qvcalc]; }; lognorm = derive2 { name="lognorm"; version="0.1.10"; sha256="021g3g7hyxcrj2lzqfjxj2ypcn8c6qminr0l6sdydynvjdjjv0pc"; depends=[Matrix]; }; @@ -12115,6 +12283,7 @@ in with self; { longit = derive2 { name="longit"; version="0.1.0"; sha256="08d7pfwd2anx6cdgpyzrn5na3s75z6plbxb11774zcxyzg81rz69"; depends=[AICcmodavg missForest R2jags rjags]; }; longitudinal = derive2 { name="longitudinal"; version="1.1.13"; sha256="046w3xbr535c5jyd68adv42a7limxp1mv57b5w6w673w707lmw2p"; depends=[corpcor]; }; longitudinalData = derive2 { name="longitudinalData"; version="2.4.5"; sha256="16jfmzdi6zw2s17iiw7yw3y9h9xz3kz4z9v2qfj0drs57m9dxgp4"; depends=[class clv misc3d rgl]; }; + longitudinalcascade = derive2 { name="longitudinalcascade"; version="0.3.2.6"; sha256="0ifslwmn71v6725xw3fa44qb01391dq8nsa95281x0crb5zrki8d"; depends=[dplyr ggplot2 lubridate rlang scales survival tidyr zoo]; }; longmemo = derive2 { name="longmemo"; version="1.1-2"; sha256="01rj5x9cgscsrakbx9155mbvs35fd3j484cfz5cds9vl521fjr3r"; depends=[]; }; longmixr = derive2 { name="longmixr"; version="1.0.0"; sha256="03hh1zrpxqnal4j7rmlllzdhhmrvbdnvdr7rd955hlnkr9946p6c"; depends=[checkmate ConsensusClusterPlus flexmix StatMatch]; }; longpower = derive2 { name="longpower"; version="1.0.24"; sha256="121nzgn5y7zmnc58xz0fxs168bxy6ywjgm2xcf42zlfc8dkh8rvp"; depends=[lme4 nlme]; }; @@ -12140,6 +12309,7 @@ in with self; { lowpassFilter = derive2 { name="lowpassFilter"; version="1.0-2"; sha256="1ic4xissqm7cq951yw7cf74a520mnm34yr6mlw1byhn5w4nzbk2x"; depends=[Rcpp]; }; lpSolve = derive2 { name="lpSolve"; version="5.6.18"; sha256="04p71mcpksighyvl74ffvgxzc7iiv7nafphddhmqa6yqzhk1j7km"; depends=[]; }; lpSolveAPI = derive2 { name="lpSolveAPI"; version="5.5.2.0-17.9"; sha256="04bqa719za6hbbip695190zcq6nkwqmm0qjfw8gpfkqpy7ryqlkv"; depends=[]; }; + lpacf = derive2 { name="lpacf"; version="1.0.1"; sha256="0lg1r7pjg9f5msvjqaq93v43mssvq7jqgv2canhp3wybnmcw0p8v"; depends=[locits wavethresh]; }; lpc = derive2 { name="lpc"; version="1.0.2.1"; sha256="1g1dzm7pcrbrdk1dmhbdhj58j69dzar41al3i8q4gysf3adqzsvv"; depends=[]; }; lpcde = derive2 { name="lpcde"; version="0.1.0"; sha256="0lr7g01ld9cq6xr5w1svlrrylba0kas0b2rzdmdnwf6jsf8296cz"; depends=[combinat ggplot2 MASS Matrix mvtnorm purrr Rcpp RcppArmadillo]; }; lpda = derive2 { name="lpda"; version="1.0.1"; sha256="0q54jid3vj5js0bhf4v4w5v3pmh4rr8dv0igcb2525fl731jsqfk"; depends=[Rglpk]; }; @@ -12147,7 +12317,6 @@ in with self; { lphom = derive2 { name="lphom"; version="0.3.1-1"; sha256="18scyg2rd30haawmnlxrkxvg6d8w9qqs7vj9cxvkg9flalsd8isg"; depends=[lpSolve]; }; lpint = derive2 { name="lpint"; version="2.1"; sha256="0xakxmzgxlg3pmc978sgfnk0wgpbzmm5lbn1wqkz792j0g97jr31"; depends=[]; }; lpirfs = derive2 { name="lpirfs"; version="0.2.2"; sha256="01cvdznz1pyvxj0vixwq9av4vys23mrzzbjd8vnngsm6rmrwci2z"; depends=[doParallel dplyr foreach ggplot2 gridExtra lmtest plm Rcpp RcppArmadillo sandwich]; }; - lpjmlkit = derive2 { name="lpjmlkit"; version="1.0.11"; sha256="0znkzpa4ydakn3sxs6pvg6kx6fsvpa2g0prbklk9w26c9m3kaac7"; depends=[abind doParallel dplyr foreach jsonlite magrittr processx rlang tibble withr]; }; lpl = derive2 { name="lpl"; version="0.11"; sha256="11w2cr5n72p4wds5dm039rdinhvxjfqvrmisksfpf47jddjxhm42"; depends=[MASS survival]; }; lpme = derive2 { name="lpme"; version="1.1.3"; sha256="1ch11cwjci98m7952p9wdsh9fj5y1mjya6ayq0q4wmbm824qfpzb"; depends=[decon flexmix locpol Rcpp RcppArmadillo]; }; lpridge = derive2 { name="lpridge"; version="1.0-8"; sha256="0jk4l95z9rcdqkc8lpp4sf1mg2dqj67rhqw1iafrxy5lx4jfaqqx"; depends=[]; }; @@ -12158,7 +12327,7 @@ in with self; { lrequire = derive2 { name="lrequire"; version="0.1.3"; sha256="03c8h9v2xhlv7bj5jv117a27gaqaly2kdxs9zyihsm9yh9rg3d79"; depends=[]; }; lrgs = derive2 { name="lrgs"; version="0.5.4"; sha256="0mf6wqlv21z68w81hvpmhgngvdsklf3x2678d9c9lxfmqmpv4a7y"; depends=[mvtnorm]; }; lrmest = derive2 { name="lrmest"; version="3.0"; sha256="1yddkgza672z9y0ipgl92pg9prhmr387zsqf0qbi9k2yzfz2vvs6"; depends=[MASS psych]; }; - lrstat = derive2 { name="lrstat"; version="0.1.11"; sha256="0bgxlyfwdyckv9pc3ajcabrxavfmhn4kmpij2xb276hvfrbprac3"; depends=[Rcpp]; }; + lrstat = derive2 { name="lrstat"; version="0.1.13"; sha256="0vrc9hjw0qqi7xh8xga4fxs4jpm1w04fc7fmzhskkf588xd1rhcg"; depends=[Rcpp]; }; lsa = derive2 { name="lsa"; version="0.73.3"; sha256="16k1g0kh3yaw7azg76aqf3hn3b6jgqg92xx0syai8l0my9ci2zzh"; depends=[SnowballC]; }; lsasim = derive2 { name="lsasim"; version="2.1.3"; sha256="1iphx4p38z3kfmmm8slqdzi85sy0lhx4p6sp5y1446f8hpcsbxcz"; depends=[cli mvtnorm polycor]; }; lsbclust = derive2 { name="lsbclust"; version="1.1"; sha256="1pbai58pfvhfcrd0nj13d54vrn9wrx2xapqhgqa1pkrjwbk5amj7"; depends=[clue doParallel foreach ggplot2 gridExtra mvtnorm plyr Rcpp reshape2]; }; @@ -12170,6 +12339,7 @@ in with self; { lslx = derive2 { name="lslx"; version="0.6.11"; sha256="1mjkz3zgcajrrkq1igqq0a1rpxwvv41ankr5mj6mcjqpg4ggng1p"; depends=[ggplot2 R6 Rcpp RcppEigen]; }; lsm = derive2 { name="lsm"; version="0.2.1.2"; sha256="1sp6c3r3g0q9lynzpcjvfwrp7xml11q66cqcisjvidm79vxjgi5v"; depends=[dplyr ggplot2]; }; lsmeans = derive2 { name="lsmeans"; version="2.30-0"; sha256="1z35dzfgib0fk201gzjhgmnryhl3mkz50gz8g6nfv4mj9kzc5x5f"; depends=[emmeans]; }; + lsnstat = derive2 { name="lsnstat"; version="1.0.0"; sha256="1ydda46j5yv51yq1pgf4nihsg5ihayk603vn3yxzhnnb1r3azh4w"; depends=[dplyr httr jsonlite]; }; lspartition = derive2 { name="lspartition"; version="0.4"; sha256="1n0pag5l4kx211dl5z9xbqijp7l04jcm0i6jgvkk2b0x9v32q4r5"; depends=[combinat dplyr ggplot2 MASS matrixStats mgcv pracma]; }; lspline = derive2 { name="lspline"; version="1.0-0"; sha256="0bc1nfpp1r5fi8rrg295k4r8pm03baqplrzwmk3sn4kdbp0apvgk"; depends=[]; }; lspls = derive2 { name="lspls"; version="0.2-2"; sha256="1cmffkyc881659l9m1miwhr3jfpwb0xb9n5chg317vcm8l9r4wcn"; depends=[pls]; }; @@ -12180,6 +12350,7 @@ in with self; { lterpalettefinder = derive2 { name="lterpalettefinder"; version="1.1.0"; sha256="0wpqh5im43753mcb792gfvs48rm1sd1qb342kig2svbp0xaa1cnv"; depends=[dplyr ggplot2 jpeg magick magrittr png tidyr tiff]; }; ltm = derive2 { name="ltm"; version="1.2-0"; sha256="0vhgbk6j0z3limsrbjkjkpfn2whiaij5j4jf1gg66mjs9dlylap1"; depends=[MASS msm polycor]; }; ltmix = derive2 { name="ltmix"; version="0.2.1"; sha256="03i0gr79xiqnny57g0y9w5dfpw51gqhrkff2rh8rggsni20pzm1h"; depends=[gtools pracma]; }; + ltmle = derive2 { name="ltmle"; version="1.3-0"; sha256="1bcahkykwwn67zvi5b0aw5awd48yq8ab8y9j3yw8f5mqdbfx0cgv"; depends=[Matrix matrixStats]; }; ltsa = derive2 { name="ltsa"; version="1.4.6"; sha256="10wmw9r00400ng2zlysd8jqgypjclshxj83x32002j2a9cz4f186"; depends=[]; }; ltsk = derive2 { name="ltsk"; version="1.0.9"; sha256="1zrcfhsm4599dj8dywzgpqabcc4sbfm7d99lxxmhqagqiqwamqyc"; depends=[]; }; ltsspca = derive2 { name="ltsspca"; version="0.1.0"; sha256="0hgl2zd8y01z8mhnqg1hlv1l7klpwhwk7q8b99pw9vgnh1f2gnfs"; depends=[pracma Rcpp RcppArmadillo]; }; @@ -12194,7 +12365,7 @@ in with self; { lumberjack = derive2 { name="lumberjack"; version="1.3.1"; sha256="15yp64vrl4wzxb3zmakiaqnz1mp0xqjfj7wbn56rm33slxwqrrkw"; depends=[R6]; }; lunar = derive2 { name="lunar"; version="0.2-1"; sha256="0mmy68wawrh7rxk0mqq6f3vhmcwbx27xsp7g63v1djz7rx2w69yv"; depends=[]; }; lutz = derive2 { name="lutz"; version="0.3.1"; sha256="15b8gzwykxyqycjba319jpsbny07j8ny9y4lnrg8mcf488ycz57y"; depends=[lubridate Rcpp]; }; - luz = derive2 { name="luz"; version="0.3.1"; sha256="1wm8w7x9232ns6b7jvzw3isqrwbq0d6w9an21nna05s39nzyvniq"; depends=[cli coro ellipsis fs generics glue magrittr prettyunits progress purrr R6 rlang torch zeallot]; }; + luz = derive2 { name="luz"; version="0.4.0"; sha256="02p1h6rhjvdkw10az1zzz0fd4l8nhn04bwkr71l73a94fbwm6dpz"; depends=[cli coro ellipsis fs generics glue magrittr prettyunits progress purrr R6 rlang torch zeallot]; }; luzlogr = derive2 { name="luzlogr"; version="0.2.0"; sha256="0n0cm94aianwcypa0gwdjvyy3dwbkfv6zi1gq2jn57b41fg20lq5"; depends=[assertthat]; }; lvec = derive2 { name="lvec"; version="0.2.5"; sha256="12q486xvnfyga15yx8av56sflahcni2wm09rx8abj8yzkjgfdiva"; depends=[BH Rcpp]; }; lvm4net = derive2 { name="lvm4net"; version="0.3"; sha256="1iq93mrdhymdixnk7y7rkibm3cqljl4y9qkjq4mzkcwcp4960y5q"; depends=[corpcor ellipse ergm glmmML igraph MASS mvtnorm network]; }; @@ -12202,7 +12373,7 @@ in with self; { lvmisc = derive2 { name="lvmisc"; version="0.1.1"; sha256="06ry1azfpqdh1hblhnc47n9265dkzhm96rajl8y7xnvqmv6ad8jj"; depends=[cowplot dplyr ggplot2 glue purrr rlang rsample tibble tidyselect vctrs]; }; lvnet = derive2 { name="lvnet"; version="0.3.5"; sha256="1wqqxavs2s0hmlifyaa1jrlc8hj4z72fkgjckkmh9m2r4jp9zy0g"; depends=[corpcor dplyr glasso lavaan Matrix mvtnorm OpenMx psych qgraph semPlot]; }; lvplot = derive2 { name="lvplot"; version="0.2.1"; sha256="0zby40866kvqxdz4hk6r0f4rfh7rzmy0n899cjjg5rqzcap7s5di"; depends=[ggplot2 RColorBrewer tibble]; }; - lwgeom = derive2 { name="lwgeom"; version="0.2-11"; sha256="069lsr050qgr1vkg9smb6h3cg82yazb3xxkbjinmdyc1i7skrmvz"; depends=[Rcpp sf units]; }; + lwgeom = derive2 { name="lwgeom"; version="0.2-13"; sha256="0rqw2nhac832b9v2hdz6wwc51iykh86x5qrq0azlibr9q242i0ph"; depends=[Rcpp sf units]; }; lwqs = derive2 { name="lwqs"; version="0.5.0"; sha256="11hkz3b3sgm6v30gwaq463klljjf6c4qx26a5ccc1wl6r439gxqp"; depends=[data_table gamm4 ggplot2 gridExtra gWQS plyr]; }; m2b = derive2 { name="m2b"; version="1.0"; sha256="0agzw67mmwrw1f61yn24z5w1pgjssdapg3li0a53i3ylnij45mzr"; depends=[caret caTools e1071 geosphere ggplot2 randomForest]; }; m2r = derive2 { name="m2r"; version="1.0.2"; sha256="0vwvpalap4z5x2004c92n0ka7i4l64ry5n8pmxs4vjpd8fyx91gc"; depends=[gmp memoise mpoly Rcpp stringr usethis]; }; @@ -12212,7 +12383,7 @@ in with self; { mBvs = derive2 { name="mBvs"; version="1.6"; sha256="14ds64mm0nrrpfr01kmx5fsvl0kqzhiq8qgmzgmyzs7c4hcs3050"; depends=[]; }; mDAG = derive2 { name="mDAG"; version="1.2.2"; sha256="0k85sl0jmpcpiz92cz6x3kd8jc6yyfv9z4wm1kyaikcf5q4qlad4"; depends=[bnlearn logistf mgm nnet pcalg Rcpp RcppArmadillo]; }; mExplorer = derive2 { name="mExplorer"; version="1.0.0"; sha256="1563d9r7f25vw5vsph21z3dwz9n40dpaiyx28ay1bbp5i1x2l3rb"; depends=[nnet qusage]; }; - mFD = derive2 { name="mFD"; version="1.0.3"; sha256="1kxiyvq7cs2hjprnj7snrdm5i2cnd00l1k59v18612d3z78b0nih"; depends=[ade4 ape betapart cluster dendextend FactoMineR gawdis geometry ggplot2 ggrepel Hmisc patchwork reshape2 rstatix vegan]; }; + mFD = derive2 { name="mFD"; version="1.0.4"; sha256="04rx17wxygfg333vxrrhqi6zwr2v5b3mgwz5wvgyikliahj9cj9g"; depends=[ade4 ape betapart cluster dendextend FactoMineR gawdis geometry ggplot2 ggrepel Hmisc patchwork reshape2 rstatix vegan]; }; mFDP = derive2 { name="mFDP"; version="0.1.0"; sha256="0mvqg3qpv1zcj5lsk36dw4qs75i66cmv4qazpmsilhfh0v46p2dx"; depends=[]; }; mFLICA = derive2 { name="mFLICA"; version="0.1.5"; sha256="0znjp95ifwqpqwrnlcb77r1cdwpvbpql6ggnck018xddc8x40hzv"; depends=[dtw ggplot2]; }; mFilter = derive2 { name="mFilter"; version="0.1-5"; sha256="0anc93mciq8j64knd0i38sfgv10w1gd375wnfzn1fq8sj3lby7kb"; depends=[]; }; @@ -12220,7 +12391,7 @@ in with self; { mHMMbayes = derive2 { name="mHMMbayes"; version="0.2.0"; sha256="1yn7xxah1pwvfdvn49kkk0jyl3iph8fis87b9g6by5kavnylrwvy"; depends=[MCMCpack mvtnorm Rcpp Rdpack]; }; mMARCH_AC = derive2 { name="mMARCH.AC"; version="2.4.0.1"; sha256="124wh0vd9jh84l4pn6snv595sxqi9acrndpnhkgxabw5p11jk6gr"; depends=[abind accelerometry ActCR ActFrag cosinor cosinor2 denseFLMM dplyr GGIR ineq kableExtra minpack_lm refund survival tidyr xlsx zoo]; }; mMPA = derive2 { name="mMPA"; version="1.2.0"; sha256="0g4zjknz52fpk7f436j95aw93aa8q2jwcrb1pqkm294kr276nnd9"; depends=[]; }; - mRMRe = derive2 { name="mRMRe"; version="2.1.2"; sha256="183wfy1sjbbinrfg8wjvwb18pnypkx3ws0k7xvcm37x8rjrkr6m5"; depends=[igraph survival]; }; + mRMRe = derive2 { name="mRMRe"; version="2.1.2.1"; sha256="1nbz2rq6fzzy01vhizpszw47c8yha1rvks6hf5dh0dx4h8p3jg6m"; depends=[igraph survival]; }; mRpostman = derive2 { name="mRpostman"; version="1.1.0"; sha256="18q75hymx13q0vkvfanrqz88j1w482j343sncvhqfljhlyff0m0b"; depends=[assertthat base64enc curl magrittr R6 rvest stringi stringr xml2]; }; mSTEM = derive2 { name="mSTEM"; version="1.0-1"; sha256="0mh09mqqpq9k8jrxs9d39009idld3b4y98ik75czdy580jmdg7mm"; depends=[doParallel foreach latex2exp]; }; mSigTools = derive2 { name="mSigTools"; version="1.0.7"; sha256="11xjrfgifh491bzrzh1vw7sawdrlj1yb1yfvj09gjggszn9wn40r"; depends=[clue philentropy quadprog sets]; }; @@ -12233,7 +12404,7 @@ in with self; { macc = derive2 { name="macc"; version="1.0.1"; sha256="1qj4mlikbqrxa6m46527xmxdbk7b3l95z6jdgpmi0ifywjiv52a4"; depends=[car lme4 MASS nlme optimx]; }; macleish = derive2 { name="macleish"; version="0.3.9"; sha256="06r97fsasjj7qdm4p8yhvi2hfs1qy35xs0ay9i3bv5k09z5zfia7"; depends=[dplyr etl lubridate phenocamr readr rvest sf stringr xml2]; }; maclogp = derive2 { name="maclogp"; version="0.1.1"; sha256="1fbwv4j4mb7zkyc5vspq7k17pwr49dbvqkssda54ggcf1nbqykmb"; depends=[BMA plot_matrix rlist]; }; - macroBiome = derive2 { name="macroBiome"; version="0.2.0"; sha256="0mxz60q201irs7nfv5k7hiyk535ijhc6a372xb0aqxnml06cw7d7"; depends=[palinsol raster rworldmap rworldxtra sp strex]; }; + macroBiome = derive2 { name="macroBiome"; version="0.3.0"; sha256="0a4g3pp3g3iai8q8c1w230wldr0g788qcmfzc1qbmc5cnaxgs56r"; depends=[palinsol raster rworldxtra sp strex]; }; macrocol = derive2 { name="macrocol"; version="0.1.0"; sha256="1qz5hsxg4ga4blbrakn4bia2l4lh6h5kh4ix7vnm7rl2f7yk4r5a"; depends=[httr lubridate openxlsx R_utils readxl]; }; macrosyntR = derive2 { name="macrosyntR"; version="0.2.19"; sha256="1lydhr7rnh8kyj0pz9bfpjczsnxpy0z8gzphi7qc0s639nw1z8ay"; depends=[dplyr ggplot2 ggthemes igraph reshape2 stringr tidyr]; }; mactivate = derive2 { name="mactivate"; version="0.6.6"; sha256="0qqhniq0wdhazhfiiw7g2b0v8jkc8jl2m117k1c6gnajg8gs1ymn"; depends=[]; }; @@ -12244,11 +12415,11 @@ in with self; { maditr = derive2 { name="maditr"; version="0.8.3"; sha256="108y240b92z5nrjp9rq5baaxncfv1g114garfv87vnwnz7bsd8c7"; depends=[data_table magrittr]; }; madness = derive2 { name="madness"; version="0.2.7"; sha256="0vcpydqnpmg9rvvzyjyqvd3qgs42n8cr9cafai51989v2w2bcf85"; depends=[expm Matrix matrixcalc]; }; madr = derive2 { name="madr"; version="1.0.0"; sha256="0lzg75kphz4a0w6n0jbsq87g72jvrbkyas4j813mryq2nv4lmsl4"; depends=[]; }; - madrat = derive2 { name="madrat"; version="2.3.2"; sha256="06gd77r8h7c3sqcq2iapqvsjj41x7qj1gqv2rp0y50g00cg2625d"; depends=[digest igraph magclass Matrix stringi withr yaml]; }; + madrat = derive2 { name="madrat"; version="3.3.0"; sha256="12da7810yd9malnfgd5fc5ys72m8hmap7hqncaq7ajpv5xpv2sqz"; depends=[callr digest igraph magclass Matrix pkgload renv stringi withr yaml]; }; mads = derive2 { name="mads"; version="0.1.6"; sha256="0nz1fg3gyj72k6dpkjnwqjvps0inv1qgk5vlc8ycj3k720qcsd81"; depends=[mrds]; }; madsim = derive2 { name="madsim"; version="1.2.1"; sha256="11gfyimbz363p5xy1x6rsz5fcgzcr55myc5aaz5lazjkcnfn17aq"; depends=[]; }; magclass = derive2 { name="magclass"; version="6.8.3"; sha256="1qss53gzhhgs4a076x7pk20n83yahjagpnvyidjvhgnwdp4nam6b"; depends=[abind data_table]; }; - magi = derive2 { name="magi"; version="1.2.1"; sha256="15v8hmq3vlwwn2b1jnbgiinjjxycdccnd8y0x6yis20zkghjq56n"; depends=[BH deSolve gridBase gridExtra Rcpp RcppArmadillo roptim]; }; + magi = derive2 { name="magi"; version="1.2.2"; sha256="0pj45j5qy3gqcl1v95cv2bmxsiimyz87wprf6g1v5sgb90fg2yjp"; depends=[BH deSolve gridBase gridExtra Rcpp RcppArmadillo roptim]; }; magic = derive2 { name="magic"; version="1.6-1"; sha256="0xkrrg5qk62pfqx0avijdjaljzslpwd0hv2m52qnqwrbx5xfqyfa"; depends=[abind]; }; magicLamp = derive2 { name="magicLamp"; version="0.1.0"; sha256="1nfcnbqd6vawz8l3vgkbhmm462xdvaa4pn6axzmz8hl05xv2k3cv"; depends=[httr tibble]; }; magicaxis = derive2 { name="magicaxis"; version="2.2.14"; sha256="1gqnivn6qjmf7axdi0pff6a40clklbipcr6qvm6ivzqbqhpbcb7v"; depends=[celestial mapproj MASS plotrix RANN sm]; }; @@ -12308,7 +12479,7 @@ in with self; { mapedit = derive2 { name="mapedit"; version="0.6.0"; sha256="1ix0sjsqb6646xyi73am9ic97plw9y9p4pl8mrkpzvqzm0pxdhxx"; depends=[dplyr htmltools htmlwidgets jsonlite leafem leaflet leaflet_extras leafpm mapview miniUI raster scales sf shiny sp]; }; mapfit = derive2 { name="mapfit"; version="1.0.0"; sha256="0xdkc325y75mcx082b6ncp1n2mfq0yq67j2mkfdcpavnz6s8jdqg"; depends=[deformula Matrix R6 Rcpp]; }; mapi = derive2 { name="mapi"; version="1.0.5"; sha256="1yljvapzkb43i2sbqsmn5aqp95hm8gjkz8m41x1chwyfddrzjsbw"; depends=[data_table pbapply Rcpp sf]; }; - mapiso = derive2 { name="mapiso"; version="0.2.0"; sha256="1vdy5chs45zhrvm4zcqmpsz3sqgzwp8z6ssghkslc3kp2ka8f4px"; depends=[isoband sf]; }; + mapiso = derive2 { name="mapiso"; version="0.3.0"; sha256="11mrvk45znna6irsd8mmkk8h63dm6wjlpsy0h8p3bldvk5mc8fi9"; depends=[isoband sf]; }; mapme_biodiversity = derive2 { name="mapme.biodiversity"; version="0.3.0"; sha256="18psh68lapkh1wq0p5hv85cqixffd8yvzhgzyyv7wxxgqbxkdd59"; depends=[curl dplyr httr magrittr pbapply purrr rvest sf stringr terra tibble tidyr tidyselect]; }; mapmisc = derive2 { name="mapmisc"; version="1.8.0"; sha256="0xp2ns6j8craz74jw4gjjhzkfbbihcy8d9dg1i08hiws743kzd8s"; depends=[raster sp]; }; mapping = derive2 { name="mapping"; version="1.3"; sha256="1in4fjdiass73fdh3y937c600bdbv8gwjzxb5wj07wkc76jxb5ba"; depends=[cartography curl dplyr geojsonio ggplot2 htmltools httr jsonlite leaflet leafpop leafsync mapview rgdal s2 sf stringi stringr tmap tmaptools viridisLite]; }; @@ -12318,30 +12489,31 @@ in with self; { mappp = derive2 { name="mappp"; version="1.0.0"; sha256="19c8575w9r1w32hqwdmmggh21lqahy73vw8g5qbxxna6r77zg5c7"; depends=[memoise parallelly pbmcapply progress purrr rlang]; }; mapproj = derive2 { name="mapproj"; version="1.2.11"; sha256="0z9lhv006pw4mwqlghvgvv66ga958bs6n1k6fmqjdpirr4f20bfv"; depends=[maps]; }; maps = derive2 { name="maps"; version="3.4.1"; sha256="0034114pdakxcx480b45qy9j4vq1v5ss961ssy92w4nqiqhsb4z6"; depends=[]; }; - mapsFinland = derive2 { name="mapsFinland"; version="0.2.1"; sha256="0s52hv36dib2833sxb8i1fvwb7l6hyx8n7y4qr3maia1g01xbj34"; depends=[]; }; + mapsFinland = derive2 { name="mapsFinland"; version="0.2.2"; sha256="13kq22z0dpsq9dk6ni2rkgbkcxccr6dby3mnc3m5sj58am48zyky"; depends=[]; }; mapsPERU = derive2 { name="mapsPERU"; version="1.0.2"; sha256="0ld6dyqrppmc1pna2h8szvr61d3bhljx9pv616wsp5j74na3ynbg"; depends=[tibble]; }; - mapsRinteractive = derive2 { name="mapsRinteractive"; version="1.0.1"; sha256="03x5mza9y5kdqshma0k7bynmd3fffayy1j243m5bhw7ln85ws73x"; depends=[gstat raster rgdal rgeos sp]; }; + mapsRinteractive = derive2 { name="mapsRinteractive"; version="2.0.1"; sha256="0v2ijx54nyfgnxh77d47lsflvqfcbdzza3finfx3z1dwl6sdd056"; depends=[gstat terra]; }; mapsapi = derive2 { name="mapsapi"; version="0.5.3"; sha256="15k7wgbfkcjnsg9qazch949pqha2iv4mg9qzzb7lnb2597il78j7"; depends=[bitops httr RgoogleMaps sf stars xml2]; }; mapscanner = derive2 { name="mapscanner"; version="0.0.6"; sha256="017m33v2523rjmspfbzq1xnb3clzmbn4p1qqzp480j71wy5c1dry"; depends=[cli curl fs glue magick magrittr memoise pdftools png purrr raster Rcpp reproj RNiftyReg sf slippymath tibble]; }; mapsf = derive2 { name="mapsf"; version="0.6.1"; sha256="0gzqz94d5skrvl41qh1iyjc1r1dd6ag1d5s00l9dlhaawhhz2wfz"; depends=[classInt Rcpp sf]; }; maptiles = derive2 { name="maptiles"; version="0.5.0"; sha256="14kscdgj6yvajqq52axq465d844azg9w5xplfr51b00jbfxmwn23"; depends=[curl png sf slippymath terra]; }; - maptools = derive2 { name="maptools"; version="1.1-6"; sha256="024kyq81gwpl7shil63nng1z6pgqcwy6j6wj44gj7ch3vd9dz9fn"; depends=[foreign lattice sp]; }; + maptools = derive2 { name="maptools"; version="1.1-7"; sha256="0m576fzaaqbz1pqjv585841k93xnmx844kpsjzivmpfyvhbmw81v"; depends=[foreign lattice sp]; }; maptpx = derive2 { name="maptpx"; version="1.9-7"; sha256="0f85i3vwr5rvz261z6j7x15gsahxrq4qqddfb0qyhypgihvwh857"; depends=[slam]; }; maptree = derive2 { name="maptree"; version="1.4-8"; sha256="1x35nk4fi2b62krcvcv187n5sbqrgvw4pbm7r19ps3jlanpi5ksm"; depends=[cluster rpart]; }; mapview = derive2 { name="mapview"; version="2.11.0"; sha256="02nkyh3m2l3jblii25c7p2yjjx7lka5l6hx7h882060959bczy47"; depends=[base64enc htmltools htmlwidgets lattice leafem leaflet leafpop png raster satellite scales servr sf sp webshot]; }; mar1s = derive2 { name="mar1s"; version="2.1.1"; sha256="1ljkvgxrramfx1rnp2rg6516mjxaa6s96amrnmqymnyjz7wlf37l"; depends=[cmrutils fda zoo]; }; - maraca = derive2 { name="maraca"; version="0.4.0"; sha256="00qnknqzpw4y99v50r4pvyyn09183z4rc3c9v5z2h712cgnsp1ai"; depends=[checkmate dplyr ggfortify ggplot2 gridExtra hce survival tidyr]; }; + maraca = derive2 { name="maraca"; version="0.5.0"; sha256="09fvzyvi0szyw4xlkc8pslw0zznprvpvn5zjnw9yv9c899y9gj90"; depends=[checkmate dplyr ggplot2 hce tidyr]; }; + marble = derive2 { name="marble"; version="0.0.2"; sha256="15m65ikk52khjrwgy2xl8pj671rf3yfqjghx2zdcs43afsyfisa0"; depends=[Rcpp RcppArmadillo]; }; march = derive2 { name="march"; version="3.3.2"; sha256="1qdjajb5mkq2r7p224kbxhf01s75hry5c5hx1cnsb48dfzd2s5xg"; depends=[]; }; marcher = derive2 { name="marcher"; version="0.0-2"; sha256="0hcxbfrwniih4kvx5sxhlffz1pc87kf52v8hvaf193rhhdykis5q"; depends=[magrittr Matrix minpack_lm mvtnorm numDeriv plyr RColorBrewer scales zoo]; }; marelac = derive2 { name="marelac"; version="2.1.10"; sha256="08phsghzvi0z78pkb5lkamni83fsw0bqfri99j6bjf6y14aygif9"; depends=[seacarb shape]; }; marg = derive2 { name="marg"; version="1.2-2.1"; sha256="1r6rl7dhvm8dghm7pm4hfw3924qja65hczl6d47v9ixnv4rxyzr9"; depends=[statmod survival]; }; margaret = derive2 { name="margaret"; version="0.1.4"; sha256="1hyflwfw9pphcbxnx9wf0alqi17s5k3j7wvh95ka2h9fvyrpj11r"; depends=[devtools dplyr httr igraph lubridate purrr readr rlang rvest scholar stringi stringr tibble tidyr tidytext tidyverse treemapify usethis widyr writexl]; }; - marginaleffects = derive2 { name="marginaleffects"; version="0.11.1"; sha256="0ccy435r10ad5pd07n7fwf9xvr3ifspaih03fvwbibi0896723fa"; depends=[checkmate data_table generics insight Rcpp RcppEigen]; }; + marginaleffects = derive2 { name="marginaleffects"; version="0.12.0"; sha256="1nscx2ycjznc1678qiddyc2h7i5ibmv61p0b5s5xgkrq3dns2z8h"; depends=[checkmate data_table generics insight Rcpp RcppEigen]; }; marginalizedRisk = derive2 { name="marginalizedRisk"; version="2021.2-4"; sha256="0kagl9xghq9nsh9qvx165j1a5plh08zxhb6nm8j402mnl8pq7a4z"; depends=[]; }; margins = derive2 { name="margins"; version="0.3.26"; sha256="0sx5xjbzz1rjz8bklfna3171s53xsh123x4bh0kmwp006v8rv309"; depends=[data_table MASS prediction]; }; marima = derive2 { name="marima"; version="2.2"; sha256="03nvh93r4052li84yjqzc106gwh1542q9s192s980gs6sgy8scm6"; depends=[]; }; - mark = derive2 { name="mark"; version="0.5.3"; sha256="01j6zji4mghihmywpdl33wj1pr8bf9vwkqgq50hagl09143d9zpr"; depends=[magrittr]; }; - markdown = derive2 { name="markdown"; version="1.5"; sha256="05lq5r698bk4qs2qklvri3rlbdss9w58n5y91yf3k6x5bzwh6580"; depends=[commonmark xfun]; }; + mark = derive2 { name="mark"; version="0.6.0"; sha256="05hh5jzf8yr2x4kjd26n1g2bq9faypn08bqxc3p4s9awy6lac6h2"; depends=[fuj magrittr]; }; + markdown = derive2 { name="markdown"; version="1.7"; sha256="1cfgrlmbn54nsn0k568xdcg08dxb8flhsysmnfrhci0pa93rlayb"; depends=[commonmark xfun]; }; markdownInput = derive2 { name="markdownInput"; version="0.1.2"; sha256="1qxil2liikbbn6w8niyc03fwqvwvdv6wiy98ip8j77729i7g2hln"; depends=[markdown shiny shinyAce]; }; marked = derive2 { name="marked"; version="1.2.6"; sha256="0k367sjyac1w894rndz5m0drmbd56nzyx5mr7mvhsqzq3gnv4dw5"; depends=[bookdown coda data_table expm kableExtra knitr lme4 Matrix numDeriv optimx R2admb Rcpp TMB truncnorm]; }; markerpen = derive2 { name="markerpen"; version="0.1.1"; sha256="0i9md9vbqkxibjkn37givxzq8mq0232cvv2fyz6g8cj6flxm6vzr"; depends=[Rcpp RcppEigen RSpectra]; }; @@ -12350,7 +12522,8 @@ in with self; { markmyassignment = derive2 { name="markmyassignment"; version="0.8.6"; sha256="1w96jmb6iiw4ghmc73l721fdrq5k197fv21fz7spiapaa5xzbkrb"; depends=[checkmate codetools httr rlang testthat yaml]; }; markophylo = derive2 { name="markophylo"; version="1.0.8"; sha256="05hfykjzx4wf2p1d6dvyx5lizfxmq3zprvnfg74r7l1izp7wpl38"; depends=[ape numDeriv phangorn Rcpp RcppArmadillo]; }; markovMSM = derive2 { name="markovMSM"; version="0.1.3"; sha256="1ip96xl8xzh2mhrmd1kmjih7rm2lxf9k4ndf6wcq86r3jzqp4zf0"; depends=[mstate survival]; }; - markovchain = derive2 { name="markovchain"; version="0.9.1"; sha256="1kb5dvanrwy6rqyz15wqw2rxi2bk5rnbfdhfvwk6fsn0vm4rax5w"; depends=[expm igraph Matrix Rcpp RcppArmadillo RcppParallel]; }; + markovchain = derive2 { name="markovchain"; version="0.9.3"; sha256="1p8vjz8yfrbn0i4qz249lsrjvgayzcj97n51xwmi7bp7zvk2lx0r"; depends=[expm igraph Matrix Rcpp RcppArmadillo RcppParallel]; }; + markovmix = derive2 { name="markovmix"; version="0.1.2"; sha256="1paqdghzpaxvqashr4lcrgnp7k1821cmwbwszyml8h78bf9ldj9z"; depends=[dplyr forcats pillar purrr Rcpp rlang tibble tidyr]; }; marmap = derive2 { name="marmap"; version="1.0.10"; sha256="0zmik6hpc44syknn7k9pbmy01jpnlp4sc9n3rhslrpnks39l0hvq"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; marp = derive2 { name="marp"; version="0.1.0"; sha256="0vywqsvmhghldrpnh2dpkgz41r7q463whfhgrn38pg8jnyhliiwi"; depends=[gtools statmod VGAM]; }; marqLevAlg = derive2 { name="marqLevAlg"; version="2.0.8"; sha256="172zr3jg48wr631l61811vd04llm3chirdhbp2mc8zryn3bbcd6n"; depends=[doParallel foreach]; }; @@ -12365,16 +12538,16 @@ in with self; { matahari = derive2 { name="matahari"; version="0.1.3"; sha256="03mhn4qh1vcz2hr0mxp6gijwgrzvbpfb8dq7lqhchbk5gq5g3fnh"; depends=[clipr jsonlite purrr readr rlang rstudioapi tibble]; }; match2C = derive2 { name="match2C"; version="1.2.4"; sha256="05g0g471dfxrfxq9a5l5zgj16m4kh39wfihjj8fdd9b7qxji7ps8"; depends=[ggplot2 mvnfast rcbalance Rcpp]; }; matchFeat = derive2 { name="matchFeat"; version="1.0"; sha256="0jh484rr71b7887igfslbg7xbr661l9c34d650xd7ajx4gfpn540"; depends=[clue foreach]; }; - matchMulti = derive2 { name="matchMulti"; version="1.1.11"; sha256="070cp69snxg1z6b059h4ii9r3nh6b1j4l31j4ixfg1c9hzpb8s15"; depends=[coin dplyr magrittr MASS mvtnorm plyr rcbsubset rlang sandwich weights]; }; + matchMulti = derive2 { name="matchMulti"; version="1.1.12"; sha256="1mkp4pkqhfrv3a0js8yc25gd2ifk8wwyrsskwggyxpqv6pnmpapw"; depends=[coin dplyr magrittr MASS mvtnorm plyr rcbsubset rlang sandwich weights]; }; matchbook = derive2 { name="matchbook"; version="1.0.7"; sha256="0xfqg8z2zkn215kqmjjkqdwrgsk7cn4jdpxfgd6razhcbvflg48j"; depends=[]; }; matchingR = derive2 { name="matchingR"; version="1.3.3"; sha256="1wr1faaixn5scx2c8g2jfvfm489k0ah9isza67gz0db8knja9nig"; depends=[Rcpp RcppArmadillo]; }; matchmaker = derive2 { name="matchmaker"; version="0.1.1"; sha256="1sa2cah8gjvg0159rv1sfw9p0aljg66xmij31mz2vfk5683r4b00"; depends=[cli forcats rlang]; }; matchr = derive2 { name="matchr"; version="0.1.0"; sha256="01nvas5ngkhzhr98n1786zsih2n2lbxx3ajwaqfd96ai0yqw2jnh"; depends=[rlang]; }; matconv = derive2 { name="matconv"; version="0.4.2"; sha256="1iyy344p3fsfx3gw9kzr0x9zhsplba22fpzl1mhk10wvf99xiwb3"; depends=[]; }; mateable = derive2 { name="mateable"; version="0.3.2"; sha256="0w5l4dkrz2bgk0pdiqpbbgkf4hyd6gdldrby8bivz03g93rnpq9g"; depends=[FNN Rcpp sn]; }; - materialmodifier = derive2 { name="materialmodifier"; version="1.1.0"; sha256="116d8pppibi4kfd4jx4pc80n036lj86fprjnakkv4m890nkbznjr"; depends=[downloader imager jpeg magrittr moments png readbitmap stringr]; }; + materialmodifier = derive2 { name="materialmodifier"; version="1.2.0"; sha256="0vawqviwh7acbi1f6jlfnwsh6axzwp1hvr697j5ws5g2hz16ib5r"; depends=[downloader imager jpeg magrittr moments png readbitmap stringr]; }; mathjaxr = derive2 { name="mathjaxr"; version="1.6-0"; sha256="0yf1sfkb2kjsplipl2v4k2gp20li9xzsynclg228sy0v243pdi7c"; depends=[]; }; - mathml = derive2 { name="mathml"; version="0.5"; sha256="0mh59m15qrksi8v4ls9sbj0sm483clma5vzklbk3xvy3f084zz3p"; depends=[rolog]; }; + mathml = derive2 { name="mathml"; version="0.8"; sha256="0pwslnl49vq0ds9a02s4srfjpdsqh845jzccxqr30rrc3ar9fnnm"; depends=[rolog]; }; mathpix = derive2 { name="mathpix"; version="0.5.0"; sha256="0imd2rxzh3zndl3laa1fx3m90zr97l02y42s7dhi6b0g2m2lirz4"; depends=[base64enc httr magick purrr rstudioapi texPreview]; }; matlab = derive2 { name="matlab"; version="1.0.4"; sha256="1shnq9z7n8yp3l457swrhm3p3nm0j2q4xb9bbxblli030wia520r"; depends=[]; }; matlab2r = derive2 { name="matlab2r"; version="1.5.0"; sha256="0fzp9l34mc0bfl3a9phq4rh9idbb22a2d4j00rvxb4b7yzj2p553"; depends=[styler]; }; @@ -12384,19 +12557,21 @@ in with self; { matpow = derive2 { name="matpow"; version="0.1.2"; sha256="1gjrq9bs94xqyms6sfyxp00f0x2gv4dfqcsz29ficzgl4iapns95"; depends=[]; }; matric = derive2 { name="matric"; version="0.2.0"; sha256="16mwn81g6s10fjyc0f2npsck3aggh643xmcwqy49kyf5jvs188c5"; depends=[arrow dplyr foreach furrr future ggplot2 glue jsonlite logger magrittr purrr readr rlang stringr tibble tidyr yardstick]; }; matricks = derive2 { name="matricks"; version="0.8.2"; sha256="0ik61jxd4hpw149dbbmis3wsfsim60mw9d0qjwh047qfg6sm1vsc"; depends=[ggplot2 Rcpp reshape2 rlang]; }; + matrisk = derive2 { name="matrisk"; version="0.1.0"; sha256="1qfhpbxza1iz0075hq3ghs6djgr6l942yx1q7pjng35rs4xj2d48"; depends=[dfoptim plot3D quantreg sn]; }; matrixLaplacian = derive2 { name="matrixLaplacian"; version="1.0"; sha256="1ixqdv3sz3sc79wn3vqhlq79j7x7cvl878m5hgvbcg6klfvlmmci"; depends=[scatterplot3d]; }; matrixNormal = derive2 { name="matrixNormal"; version="0.1.1"; sha256="0l89s33sjxjb7dyzfny6v7cjw8qmlps4z1bjmlzvcka4qbn6kc2z"; depends=[mvtnorm]; }; matrixProfile = derive2 { name="matrixProfile"; version="0.5.0"; sha256="0nd54k878xf7hzwxawh03c3na4jfvb68afarkwrmmffjlp3i8a9g"; depends=[fftw signal TTR zoo]; }; matrixStats = derive2 { name="matrixStats"; version="0.63.0"; sha256="0pqz6mn5l7inh464yj45i6rf8ycab0zdvvjczwsv0bkl442bc060"; depends=[]; }; matrixStrucTest = derive2 { name="matrixStrucTest"; version="1.0.0"; sha256="06la9xmpi1viyjml4m1akbna3lwkz5lnq95v1nnf73i9zpfwz03k"; depends=[]; }; - matrixTests = derive2 { name="matrixTests"; version="0.1.9.1"; sha256="1fixzjbrwm0shyvkishff6l5yanqnvhcgbidkw8fsalf3jwwc0ix"; depends=[matrixStats]; }; + matrixTests = derive2 { name="matrixTests"; version="0.2.2"; sha256="0xgmgcs1awzh1h3j8sfb44gazgfrh9m2ngz3ziq43m84lv7vxn5r"; depends=[matrixStats]; }; matrixcalc = derive2 { name="matrixcalc"; version="1.0-6"; sha256="09pk0ym6qzribxc6v18cpb6478i4r4kzxpkljjbb3n323zqx5iqb"; depends=[]; }; matrixcut = derive2 { name="matrixcut"; version="0.0.1"; sha256="1q1m6yd42cwxdnysjgcnp7mg8f9cryphd59k0wzsrirqnj8c1jz4"; depends=[igraph inflection]; }; - matrixdist = derive2 { name="matrixdist"; version="1.1.7"; sha256="1vz8mq86yycgw9fghhq2p3q6p5r9sa7hqm6bf1zdqqg32cd50kip"; depends=[nnet Rcpp RcppArmadillo reshape2]; }; + matrixdist = derive2 { name="matrixdist"; version="1.1.8"; sha256="1apyzjikf8xz9lrink3ikvi11bvvgzdbvj26c482qikhnqvvqvpq"; depends=[nnet Rcpp RcppArmadillo reshape2]; }; matrixprofiler = derive2 { name="matrixprofiler"; version="0.1.9"; sha256="1kqpxg0mvyc494nr2whrcwjaa51jm5n2mxjwhdcr87jqp5y3hma6"; depends=[checkmate Rcpp RcppParallel RcppProgress RcppThread]; }; matrixsampling = derive2 { name="matrixsampling"; version="2.0.0"; sha256="05dbn7rj07jx1hj7i6k3akf11hysxg6v32kav9fvsqmiy2zkippa"; depends=[keep]; }; - matsbyname = derive2 { name="matsbyname"; version="0.6.0"; sha256="0msynlf2gwlzwyifqlcgaraw8hccjb7vx2gfq546y2qk3jzy8bci"; depends=[assertthat dplyr lifecycle magrittr Matrix matrixcalc purrr RCLabels rlang tibble]; }; - matsindf = derive2 { name="matsindf"; version="0.4.0"; sha256="1mhjsyg6jjl1021rckksfb0jip44hciarfafsbl4qjwf7pih0gwk"; depends=[dplyr magrittr matsbyname purrr rlang tibble tidyr]; }; + matrixset = derive2 { name="matrixset"; version="0.1.1"; sha256="1xbp5g23x0b263nzw7nzpb3ybl17b1r60lbbv39ccsnfawd5fw89"; depends=[cli crayon dplyr pillar purrr R6 Rcpp rlang stringr tibble tidyr tidyselect vctrs]; }; + matsbyname = derive2 { name="matsbyname"; version="0.6.3"; sha256="1ncqjmcfbypysqqkrprb4xwqvzkrajbd7sp189ji8a9s982sv284"; depends=[assertthat dplyr lifecycle magrittr Matrix matrixcalc purrr RCLabels rlang tibble]; }; + matsindf = derive2 { name="matsindf"; version="0.4.3"; sha256="0zcfsvry7nna95lgyim8lb6yh0ikkn3plar04inwp8nfwlyanflx"; depends=[assertthat dplyr lifecycle magrittr matsbyname purrr rlang tibble tidyr]; }; matuR = derive2 { name="matuR"; version="0.0.1.0"; sha256="01nxs4czzs1kcxk63nwr2gnvffmlnx3yfllrhi8khdkj498s6sx1"; depends=[dplyr ggplot2 ggrepel lubridate magrittr tidyr]; }; mau = derive2 { name="mau"; version="0.1.2"; sha256="1wgiai8f1kbjh9hfwv4m0kavd44ib5xb33p8m16zpawnw14m7sj5"; depends=[data_table ggplot2 gtools igraph RColorBrewer Rdpack stringr]; }; mauricer = derive2 { name="mauricer"; version="2.5.2"; sha256="1zd68dzbbcck0y7bk6dw3yp6v9rh824cp3f0vza6y7lav40q1p2v"; depends=[beastier stringr]; }; @@ -12420,7 +12595,7 @@ in with self; { mbest = derive2 { name="mbest"; version="0.6"; sha256="1x0f7y5hj6a35wq1xn6g7jyjn9c4zryahwlf07qrypgrcnj2m8vx"; depends=[abind bigmemory foreach lme4 logging nlme]; }; mbir = derive2 { name="mbir"; version="1.3.5"; sha256="10sd5gk2k94cmi49nbpywqvh9bxj9q3psa3d00zmw1a7d6c0jjpd"; depends=[effsize psych]; }; mblm = derive2 { name="mblm"; version="0.12.1"; sha256="1fipb3bryaimr30lcxsxrn0ymv24z39swca7s4z7p9xcfg3ban1b"; depends=[]; }; - mbmixture = derive2 { name="mbmixture"; version="0.2-5"; sha256="0w6a77lavdsrg9sf6jmi3xyxgx4d0v2nf85fh9bnrjdp51g6d0zi"; depends=[numDeriv]; }; + mbmixture = derive2 { name="mbmixture"; version="0.4"; sha256="0g74jzhdf8grrp7pipj1m6hvyv4akycabm0ingy505a5a546ddzg"; depends=[numDeriv]; }; mboost = derive2 { name="mboost"; version="2.9-7"; sha256="01ln0vxbbx1fq77q17sx61si82lhfibbchsnf2yw9032cn8wnhh2"; depends=[lattice Matrix nnls partykit quadprog stabs survival]; }; mbr = derive2 { name="mbr"; version="0.0.1"; sha256="08534d0ssj5zli7880a2wzl46ydf87gn5xlv6xp0iph71wlpc52y"; depends=[data_table dplR MASS Matrix Rfast]; }; mbrdr = derive2 { name="mbrdr"; version="1.1.1"; sha256="1ck0l2zp10xlg2d99glb76fxhc1r21aknk8x8452v25gpaqvir4c"; depends=[]; }; @@ -12463,7 +12638,7 @@ in with self; { mcmcsae = derive2 { name="mcmcsae"; version="0.7.2"; sha256="0vmvj2igjzngg6jxii46hfbkp4mvgrnz38cj13354i6jvp8yybww"; depends=[GIGrvg loo Matrix matrixStats Rcpp RcppEigen]; }; mcmcse = derive2 { name="mcmcse"; version="1.5-0"; sha256="0qvlkv7j35h2lxdzhbsbsrf1cgsbgf4in7lxgwmx7vs85k10v0ja"; depends=[ellipse fftwtools Rcpp RcppArmadillo testthat]; }; mco = derive2 { name="mco"; version="1.15.6"; sha256="10h5d2lw6ybyva44nn5wml6v3ljpnv9m1b2lh36vg2cwrdwy5sqp"; depends=[]; }; - mcompanion = derive2 { name="mcompanion"; version="0.5.5"; sha256="13qqbvz0zq2pbf7r5civ01aqvwv5h7cbm7l72qbqnldr5rpn6ra7"; depends=[gbutils MASS Matrix Rdpack]; }; + mcompanion = derive2 { name="mcompanion"; version="0.5.6"; sha256="1a0fbliszmsvjvfjsmgllira3fid05qj794kg7hmzdp949gn88m2"; depends=[gbutils MASS Matrix Rdpack]; }; mcount = derive2 { name="mcount"; version="1.0.0"; sha256="1l42d4xd2xyvgzvc8sj59qsnpfn2k8x57dqv4bx9yschm25hspdd"; depends=[bbmle]; }; mcp = derive2 { name="mcp"; version="0.3.3"; sha256="1c19y2611crvxcpz1wl2l5lf7ln9dkc56d14ri30hj44wz2liwdf"; depends=[bayesplot coda dplyr future future_apply ggplot2 loo magrittr patchwork rjags rlang stringr tibble tidybayes tidyr tidyselect]; }; mcparallelDo = derive2 { name="mcparallelDo"; version="1.1.0"; sha256="1ivh0d4f7ks6xwcjywk62h1zhr7h5bbhzpisky7973wi4g8vipbn"; depends=[checkmate R_utils R6]; }; @@ -12485,8 +12660,9 @@ in with self; { mded = derive2 { name="mded"; version="0.1-2"; sha256="1j8fcz5yc70p9qd9l010xj1b625scdps8z1pqh75b45p2hiqbhlc"; depends=[]; }; mdendro = derive2 { name="mdendro"; version="2.1.0"; sha256="1hpm7aqfg340nrrn8m962kwaw67myvcrkv9yihdrxh5gmcjdbhxf"; depends=[Rcpp]; }; mdftracks = derive2 { name="mdftracks"; version="0.2.1"; sha256="0j1j3dbl5g8zv59ppyvnxp39vpd24ygxbdhnavjwnw1v1fpippbf"; depends=[]; }; - mdgc = derive2 { name="mdgc"; version="0.1.6"; sha256="14arfmkr1gd3cg7f9ynav3p47ms93x7v7qkpksqc1nmf7b9wbw39"; depends=[BH psqn Rcpp RcppArmadillo testthat]; }; + mdgc = derive2 { name="mdgc"; version="0.1.7"; sha256="0p2dfvngyv9rwbcjfw7s3diim9k2gbjn7qsmh7ybxhd529y4w0yl"; depends=[BH psqn Rcpp RcppArmadillo testthat]; }; mdhglm = derive2 { name="mdhglm"; version="1.8"; sha256="1myky8d2ilwdliqrzd2i5qvja82iz7w6qbigl7h4znpk8pdgrjb3"; depends=[boot Matrix mvtnorm]; }; + mdir = derive2 { name="mdir"; version="0.9.0"; sha256="0zc5dacyfv1vfr86cyhjrwcmd6pws6sm7pqsw00nlp7b77l1qms5"; depends=[ggplot2 Rcpp RcppArmadillo RcppParallel salso stringr testthat tidyr]; }; mdir_logrank = derive2 { name="mdir.logrank"; version="0.0.4"; sha256="0bhsr005dq9v85sjm2g9xlpksxwzsmsk14g0q5v3hkjvm5wk6xmv"; depends=[MASS]; }; mdmb = derive2 { name="mdmb"; version="1.8-7"; sha256="0qx1ipq8ra2c3f4hnnlj0h1viky5ld694ga6rkp53196s2yn0vhy"; depends=[CDM coda miceadds Rcpp RcppArmadillo sirt]; }; mdpeer = derive2 { name="mdpeer"; version="1.0.1"; sha256="1vsqhah8h47s8k687fwa352549mdz16mwk1g7rcmhx75c2k85w2q"; depends=[boot ggplot2 glmnet magic nlme nloptr psych reshape2 rootSolve]; }; @@ -12500,10 +12676,10 @@ in with self; { meanShiftR = derive2 { name="meanShiftR"; version="0.56"; sha256="1bn75r5mf3pr1mr8384w175yabw75cynxlz2xh1gl2nar86k4m0x"; depends=[]; }; meanr = derive2 { name="meanr"; version="0.1-5"; sha256="0db3kjd134f2wbza7py4hpxbbwrbln8dx6rw244my6pi3jifvm5h"; depends=[]; }; meantables = derive2 { name="meantables"; version="0.1.2"; sha256="1lg1a9dccb5xhbnmmgwkncj9w3g1zndh0ddjmascxhvzp9ckdvhg"; depends=[dplyr rlang stringr tibble]; }; - measr = derive2 { name="measr"; version="0.2.1"; sha256="036ddxfy6f8id2naq5bpi2qmxm0afjykjagywfpiv7rgh8qhxwga"; depends=[BH dcm2 dplyr fs glue loo magrittr posterior psych Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr]; }; + measr = derive2 { name="measr"; version="0.3.1"; sha256="002x784ganw4gny134ijpmssl1iq5yxfwral8q319395r6x2c90l"; depends=[BH dcm2 dplyr fs glue loo magrittr posterior psych Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr]; }; measuRing = derive2 { name="measuRing"; version="0.5"; sha256="0yblqkv5444y75jkb6d0zs728i6vybm294h7b5622pwfjqlfhnh2"; depends=[dplR pastecs png tiff]; }; measurementProtocol = derive2 { name="measurementProtocol"; version="0.1.1"; sha256="02k60psb6299p82bk7yv7isy41jq26yk4r8kmsjpfnx9dwm1kgk8"; depends=[assertthat cli httr jsonlite rappdirs]; }; - measurements = derive2 { name="measurements"; version="1.5.0"; sha256="1hwrc3qb12zbk0kjhfq6nnmz0ba0hcfz4vjj7f5w3wwi3d33xqnl"; depends=[]; }; + measurements = derive2 { name="measurements"; version="1.5.1"; sha256="061xjwsacsk8vblva4s09xdrvd7kfgxydnpgr7imigyny01c5bh9"; depends=[]; }; measures = derive2 { name="measures"; version="0.3"; sha256="0325hhncg9fhq28cfl1hk6rhcmzzcngsmnkmbn9ri3b4hwqlafal"; depends=[]; }; meboot = derive2 { name="meboot"; version="1.4-9.3"; sha256="1d8h1l9kpmsndgpmwkxpn05bx22m51lkb2w40p03lwajc9847j3d"; depends=[dynlm hdrcde nlme tdigest]; }; meconetcomp = derive2 { name="meconetcomp"; version="0.2.0"; sha256="0q38l7zwpwi5pfgnazn9xnhrac6sqyn8m8dl8462dq1smlyl6y2x"; depends=[dplyr ggpubr igraph magrittr microeco R6 reshape2]; }; @@ -12513,7 +12689,6 @@ in with self; { medScan = derive2 { name="medScan"; version="1.0.1"; sha256="19zvl50xbnf76d0ck30zrfd8cv6j250jl9y00vj1cbl6sspwz6ss"; depends=[fdrtool HDMT locfdr qqman qvalue]; }; mederrRank = derive2 { name="mederrRank"; version="0.0.8"; sha256="1fvvik3bhjm6c0mhi2ma915986k2nj3lr2839k5hfrr7dg3lw3f4"; depends=[BB numDeriv]; }; medfate = derive2 { name="medfate"; version="2.9.3"; sha256="0vsklvj6m0c2yyx29dsfwc22i9vnrgr34gifmd5c7sjddrpzagdq"; depends=[ggplot2 meteoland Rcpp shiny]; }; - medflex = derive2 { name="medflex"; version="0.6-7"; sha256="171vp0wmmmbz42xcwjy065vhvig49s4ac2hzawfww2mvpfj0g0fj"; depends=[boot car Matrix multcomp sandwich]; }; mediacloudr = derive2 { name="mediacloudr"; version="0.1.0"; sha256="1r11mpz44msla71lqw45r9s8z7rwvbnqi026l0ljx6crby183h0w"; depends=[httr jsonlite rvest xml2]; }; mediateP = derive2 { name="mediateP"; version="0.2.0"; sha256="0qmams2hdvhq7abfidblgdz44nh5ja3byn233q3k61hvz7asxmc7"; depends=[boot]; }; mediation = derive2 { name="mediation"; version="4.5.0"; sha256="0i88wvqqw8cmxmh9i78rqzp4s16zhf12dgl9fsk9bhw7hxhhc0i1"; depends=[boot Hmisc lme4 lpSolve MASS Matrix mvtnorm sandwich]; }; @@ -12529,7 +12704,7 @@ in with self; { mefa4 = derive2 { name="mefa4"; version="0.3-9"; sha256="0g46z14r7d8wkyxsp58i6007r9jljf269snrbachamy2wlmpc1g1"; depends=[Matrix]; }; meifly = derive2 { name="meifly"; version="0.3.1"; sha256="0pgmxa4g16zhx3jx5g56h2s1f4cr4bkz3bp7404dm2729083rvjx"; depends=[leaps MASS plyr]; }; mekko = derive2 { name="mekko"; version="0.1.0"; sha256="09y50k4r4mnx351a5zhkqg9s2xyl3d149dhmfy2z6hzm5yg2ajyi"; depends=[ggplot2]; }; - melt = derive2 { name="melt"; version="1.9.0"; sha256="04k8w06siskwn8g2x9p6p8gxl4l9mjmrk759czglpfb1h6lb953z"; depends=[BH dqrng Rcpp RcppEigen]; }; + melt = derive2 { name="melt"; version="1.10.0"; sha256="0rg2vm9gp65h4hgwhyrfhyh5h08dpffxhxg4hhzslai4f5yv7385"; depends=[BH dqrng Rcpp RcppEigen]; }; meltr = derive2 { name="meltr"; version="1.0.1"; sha256="0rg6frch51ydigsas6ycfhkgd0jldi95paq6gmja6rcq6vlwnhgj"; depends=[cli cpp11 R6 rlang tibble]; }; meltt = derive2 { name="meltt"; version="0.4.3"; sha256="1j2iz05xr9ddj9pk2yw7j7kjfr9rxmxkk123c6336fqdm14wvd21"; depends=[dplyr ggplot2 leaflet plyr Rcpp RcppArmadillo reticulate shiny shinyjs tibble tidyr]; }; mem = derive2 { name="mem"; version="2.17"; sha256="0nlw0mf5dhp9x5ymc33a600i199c5g3qi80g5jqacp0m0q6s2b8n"; depends=[boot dplyr EnvStats ggplot2 mclust purrr RColorBrewer RcppRoll sm tidyr]; }; @@ -12589,15 +12764,15 @@ in with self; { metadynminer = derive2 { name="metadynminer"; version="0.1.7"; sha256="0ch86qqs3872d28c8wrs24ryg2xahqsmndmzjc3z6qznkrq1adzh"; depends=[Rcpp]; }; metadynminer3d = derive2 { name="metadynminer3d"; version="0.0.2"; sha256="1y1csfp57qrv394hj96yr5v3brxw7v0a07k2pg7ypw08gshvgqjm"; depends=[metadynminer misc3d Rcpp rgl]; }; metafolio = derive2 { name="metafolio"; version="0.1.1"; sha256="1bnlmh1pwwg5hjmsqnswn4d4phjdpsiyg7pwl8nbxyx0g2hw3p5v"; depends=[colorspace MASS plyr Rcpp RcppArmadillo]; }; - metafor = derive2 { name="metafor"; version="4.0-0"; sha256="0fy2ildv2g3gckxh5jd4y7b1mpc616l4r52d5rf78nr2mzmm5maw"; depends=[mathjaxr Matrix metadat nlme numDeriv pbapply]; }; + metafor = derive2 { name="metafor"; version="4.2-0"; sha256="0rm7w1mmjhry4xkrv6nkhg5ln1cb61lg66y2nbwim32n9wxl5fzi"; depends=[mathjaxr Matrix metadat nlme numDeriv pbapply]; }; metaforest = derive2 { name="metaforest"; version="0.1.3"; sha256="1q6m60cd7gl7y0gdjd10ky25hwv5jc4x5g5sr5w61xc3j2hnw8in"; depends=[data_table ggplot2 gtable metafor ranger]; }; metafuse = derive2 { name="metafuse"; version="2.0-1"; sha256="1zdw22f5kzvy2xr3c2csy873hcags60as567brc2sw17d0apfy8j"; depends=[evd glmnet MASS Matrix]; }; - metagam = derive2 { name="metagam"; version="0.3.1"; sha256="05rijhhqwlfd563fx4r4kbqnr9hgbxn1qh05h9ljny0js15q06b9"; depends=[ggplot2 metafor mgcv rlang]; }; + metagam = derive2 { name="metagam"; version="0.4.0"; sha256="1kpxf2jxbx13if3ir9iqsqbdg6gg0l9pa3qnxmff4w5dd59by5kd"; depends=[ggplot2 metafor mgcv rlang]; }; metagear = derive2 { name="metagear"; version="0.7"; sha256="1gwfk6v591xxsccbi287b90vnf5c1jfz72jxcxy9iswp0jpjflaq"; depends=[MASS Matrix metafor stringr]; }; metaggR = derive2 { name="metaggR"; version="0.3.0"; sha256="11kqic87xrm9d046kgc0l0wfip2gimnvsbm559dbyjbrv2f27bpb"; depends=[MASS]; }; metaheuristicOpt = derive2 { name="metaheuristicOpt"; version="2.0.0"; sha256="0ra4hl9l1jlzymj218m2i6xrxfacyx4aaln5pk7q4di2ks0nq11m"; depends=[]; }; metajam = derive2 { name="metajam"; version="0.2.3"; sha256="0ryzsnwfhapsyz40ckjj6gn2chf37m62z3l7xv703878bghpdqwc"; depends=[dataone dplyr EML emld lubridate purrr readr rlang stringr tibble tidyr]; }; - metalite = derive2 { name="metalite"; version="0.1.1"; sha256="1q4yjfxfc9gmdqqrz43hjvvdszkq3515ajgjmy749xxg58llav2a"; depends=[glue rlang]; }; + metalite = derive2 { name="metalite"; version="0.1.2"; sha256="10rgk6qp6mpa7ag3w62n3kkz8yxf5h7k7bcj2xsi4cdqfc3xp357"; depends=[glue rlang]; }; metalite_ae = derive2 { name="metalite.ae"; version="0.1.1"; sha256="0z33yj8v67mkjg47zd627mnp0p1b2gnlvj7gf0d7np1j38572j1s"; depends=[dplyr glue metalite r2rtf tidyr]; }; metamedian = derive2 { name="metamedian"; version="1.0.0"; sha256="15qq3yig2j3nh06jz75fdfn5akq038wdhrkkczl06x16qlp37wfb"; depends=[estmeansd Hmisc metaBLUE metafor]; }; metamer = derive2 { name="metamer"; version="0.3.0"; sha256="0b427cbasy1irks9jy5kjg3ay5xa01dcalhl8g14smhkdv5054wz"; depends=[FNN progress]; }; @@ -12627,21 +12802,21 @@ in with self; { meteo = derive2 { name="meteo"; version="0.1-5"; sha256="0n37plka9vsxwd03lca3h6m8dcz3f1bi46jn3bz7vyilnkq9hcdk"; depends=[gstat plyr raster rgdal snowfall sp spacetime]; }; meteoEVT = derive2 { name="meteoEVT"; version="0.1.0"; sha256="1i3zi1cgzv6lymmd7m92rmhmnxmdvi5nl367hnfbgxzy44van8l8"; depends=[ncdf4 purrr]; }; meteoForecast = derive2 { name="meteoForecast"; version="0.56"; sha256="0nbjl4x06ni6jk8ji6n3cgd07iszw87lwg52rp8avvsz3kh19p5c"; depends=[ncdf4 raster sp XML zoo]; }; - meteoland = derive2 { name="meteoland"; version="2.0.0"; sha256="1q7w5b0mafavjmpc5d96w0p6dqcrfn5m7x0kskss2240pbk3hlsp"; depends=[assertthat cli cubelyr dplyr lifecycle lubridate meteospain ncdf4 ncdfgeom ncmeta purrr Rcpp rlang sf sp stars tidyr units]; }; + meteoland = derive2 { name="meteoland"; version="2.0.1"; sha256="1kms1932nk1a10sm6lgl898h9f72mhypi86s2bd8qi1w1lnr04df"; depends=[assertthat cli cubelyr dplyr lifecycle lubridate ncdfgeom ncmeta purrr Rcpp rlang sf stars tidyr units]; }; meteor = derive2 { name="meteor"; version="0.3-4"; sha256="01009d9wpxybig4n82m48hqqg1k4x4shcjxfy8y0kk7cgfdb4naw"; depends=[Rcpp]; }; meteorits = derive2 { name="meteorits"; version="0.1.1"; sha256="1vk8pbhfc5mbkbpw7ml81gx9i8187xp3vx36pbyyhjbrpy6gqabx"; depends=[MASS pracma Rcpp RcppArmadillo]; }; meteospain = derive2 { name="meteospain"; version="0.1.2"; sha256="1yz5v6zrkz09ia0cwq23fshhxl5j1fmn63cj8m8n5ishb2pcg23l"; depends=[assertthat cachem cli curl dplyr glue httr jsonlite lubridate memoise purrr rlang sf stringr tidyr units vctrs xml2]; }; - metevalue = derive2 { name="metevalue"; version="0.1.14"; sha256="1wfydiam9wcf5ilr8wpji1by5r9bs5vlhcv0vpjlavzfdjynim49"; depends=[dplyr psych sqldf]; }; + metevalue = derive2 { name="metevalue"; version="0.2.4"; sha256="1iazpldafzq1rzg1hbp9yyqwngq00mbxmfahidlj3ybl1y459lah"; depends=[dplyr psych sqldf]; }; methcon5 = derive2 { name="methcon5"; version="0.1.0"; sha256="08xsi6j65izxqcrlh37f2d7m3pwna1v6zvdv96mqylsjqgqmbk5x"; depends=[dplyr magrittr purrr rlang]; }; metools = derive2 { name="metools"; version="1.0.0"; sha256="05l49ifx2nnlbdxh2qhdb0islf95fc67720rm5in7mrlida4khnq"; depends=[ggplot2 lubridate scales stringr tibble tidyr]; }; - metrica = derive2 { name="metrica"; version="2.0.2"; sha256="09l0i4v7v619pjpv8gmn2h7x3rsa36viks4rsgkw5rlwm5899mcd"; depends=[DBI dplyr energy ggplot2 ggpp minerva rlang RSQLite tidyr]; }; + metrica = derive2 { name="metrica"; version="2.0.3"; sha256="10pkd29vcrm74fxf4i5bmkrj6528vfzipf53nfdpic9bavk2s2i7"; depends=[DBI dplyr energy ggplot2 ggpp minerva rlang RSQLite tidyr]; }; metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; }; metrix = derive2 { name="metrix"; version="1.1.0"; sha256="0ixp868pag05a6h4l8q4x55w0dg4xki4q6klfi9dzx82knzb7s9l"; depends=[Matrix stringr vegan]; }; metro = derive2 { name="metro"; version="0.9.1"; sha256="0agmwvbwhpn5nzzkyz20pspbv6i80i636fhf9sqydgl1fskknrf2"; depends=[geodist hms httr jsonlite tibble]; }; metropolis = derive2 { name="metropolis"; version="0.1.8"; sha256="031fcy0v13bvy7gg26988fvpqdsfndx2rynkhb1jvirnrf0fngy4"; depends=[coda]; }; mets = derive2 { name="mets"; version="1.3.2"; sha256="1n117qpwfrq9cmnda635h0845ps3zdxq16xn6w30qrcjiikx32qs"; depends=[lava mvtnorm numDeriv Rcpp RcppArmadillo survival timereg]; }; metsyn = derive2 { name="metsyn"; version="0.1.2"; sha256="0iwp0nz07yd33qd93fjblmvik1l1xkv6rkccn3054zs2bkrzjq4f"; depends=[foreach readr stringr tibble]; }; - mev = derive2 { name="mev"; version="1.14"; sha256="0pxjvvmrhjrdcznknncyhjghscajkw0q0y4r3ai22nkx70gln6bv"; depends=[alabama evd nleqslv nloptr Rcpp RcppArmadillo]; }; + mev = derive2 { name="mev"; version="1.15"; sha256="0ipb61gqwivcqzqsv2p3i96bhwv7wadh50rb8cd1j0pqb5q3s76k"; depends=[alabama nleqslv Rcpp RcppArmadillo Rsolnp]; }; mewAvg = derive2 { name="mewAvg"; version="0.3.1"; sha256="1pnjzfq4rdjjlqp1mxxlpkhkfgq1nym8pgaqrvpm76zw4xnx7p7m"; depends=[]; }; mexhaz = derive2 { name="mexhaz"; version="2.4"; sha256="1dh92gawq6hdq0594m5ayzrafxi2mz3362dx3dgvdmznwcyqvsbz"; depends=[lamW MASS numDeriv statmod survival]; }; mexicolors = derive2 { name="mexicolors"; version="0.2.0"; sha256="0vbhwaq19hqd63qjybssgqxkawjr6vnar6k0nrb583hh1q9hjyg2"; depends=[]; }; @@ -12655,13 +12830,14 @@ in with self; { mgc = derive2 { name="mgc"; version="2.0.2"; sha256="1l9qs4nz1rn56qp569nh26yz3c7i4zh3r43c209zh7kvizpagx0i"; depends=[abind boot energy MASS raster]; }; mgcViz = derive2 { name="mgcViz"; version="0.1.9"; sha256="09n18ypjdwcca38i2v636ijgnzwalv7wh55z82a0pfrbzabiynn1"; depends=[gamm4 GGally ggplot2 gridExtra KernSmooth matrixStats mgcv miniUI plyr qgam shiny viridis]; }; mgcv = derive2 { name="mgcv"; version="1.8-42"; sha256="1ixn5pgc3qriy5nfd264dz7l126xg4k4zidgkqag41mdcj5w6zq8"; depends=[Matrix nlme]; }; + mgee2 = derive2 { name="mgee2"; version="0.4"; sha256="03id3g6zbw06xracwjkwfcll62nx7psppjsd3gj05hzjvalqgwks"; depends=[ggplot2 MASS]; }; mggd = derive2 { name="mggd"; version="1.1.0"; sha256="1pr53bnijs5f8d8nj3lvr271qcp1cnw2q9682m3xr5sm0j5g3nlq"; depends=[lifecycle MASS rgl]; }; mglasso = derive2 { name="mglasso"; version="0.1.2"; sha256="1896fg1gdgah8vmikz2br6v0rslhhh2frffkjiy6fnw4qxa5zsv9"; depends=[corpcor ggplot2 ggrepel gridExtra Matrix R_utils reticulate rstudioapi]; }; mglmn = derive2 { name="mglmn"; version="0.1.0"; sha256="1g642hhs28q6x34xgrfrmmsb2jsn9zy4jxad0x5ai3px48zzdb4r"; depends=[mvabund snowfall]; }; mgm = derive2 { name="mgm"; version="1.2-13"; sha256="0lbryfibcph7sryx1wb9p08k90g3a63cf0aarr2m9fr9cw8q2mbc"; depends=[glmnet gtools Hmisc qgraph stringr]; }; mgss = derive2 { name="mgss"; version="1.2"; sha256="0czzr5hc9sr8yc362q9xag3vphwk1gfahczpya2mh1l6fsa74fbn"; depends=[combinat Matrix Rcpp statmod]; }; mgsub = derive2 { name="mgsub"; version="1.7.3"; sha256="1mci6x65h94qiz9cwikx2inbrwkykv43zbs8abfbx416zrh2bbn9"; depends=[]; }; - mgwrsar = derive2 { name="mgwrsar"; version="1.0"; sha256="1bmwp5fp5gcgalyyh0cjv4gvngl2lsv38vniicgqgw78gqi1xlhv"; depends=[doParallel foreach ggplot2 htmltools knitr leaflet mapview Matrix microbenchmark nabor qlcMatrix Rcpp RcppEigen rlang sf sp spgwr]; }; + mgwrsar = derive2 { name="mgwrsar"; version="1.0.4"; sha256="19rsw5qjcq3bjqajz83dbkjdgh1dazpw7wvkbn4gdcksgmaxm5l2"; depends=[caret doParallel dplyr foreach ggplot2 gridExtra htmltools knitr leaflet mapview Matrix mboost mgcv microbenchmark nabor qlcMatrix Rcpp RcppEigen rlang sf sp spgwr]; }; mhazard = derive2 { name="mhazard"; version="0.2.1"; sha256="1jvhjrpvl0vn9dzmi4fylnbdgn4fz0dq55qrc9s8mlk6qgy8x6q5"; depends=[boot plot3D Rcpp RcppArmadillo rootSolve survival]; }; mhcnuggetsr = derive2 { name="mhcnuggetsr"; version="1.1"; sha256="0fq0niigf4lb6jqcy0w4mkfy65pxrw4brf3pg2nvmgnv3c91lgsb"; depends=[rappdirs reticulate stringr tibble]; }; mhsmm = derive2 { name="mhsmm"; version="0.4.16"; sha256="009dj0zkj1zry7jr9hf4cknb686z50a2l967if64xm0dvjmp7dgs"; depends=[mvtnorm]; }; @@ -12679,6 +12855,7 @@ in with self; { micEcon = derive2 { name="micEcon"; version="0.6-18"; sha256="1vdxl93d6fpfp6xfzrypnkwfry9ajfpivarj4glnx3w2sydmi7ql"; depends=[miscTools plm]; }; micEconAids = derive2 { name="micEconAids"; version="0.6-20"; sha256="0myy9ny2v90g9lgg8mi7ylfz6iyz7jqbs1xskhj9hqdps90rm0k1"; depends=[lmtest micEcon miscTools systemfit]; }; micEconCES = derive2 { name="micEconCES"; version="1.0-2"; sha256="039hv274xbs3syw0nxgkvxgfyn594fpcrlgmfwd2mfv6y78hc796"; depends=[car DEoptim micEcon minpack_lm miscTools systemfit]; }; + micEconDistRay = derive2 { name="micEconDistRay"; version="0.1-2"; sha256="1q15a2sfxk9kdmx27j98q7is1nczxl7s464bzk445a5v8s0dnvs3"; depends=[sfaR]; }; micEconIndex = derive2 { name="micEconIndex"; version="0.1-8"; sha256="1gwvg0anhigd7q1x0p51qddnr678vc79mi1c3q3j5gpby0fgn3ig"; depends=[miscTools]; }; micEconSNQP = derive2 { name="micEconSNQP"; version="0.6-10"; sha256="0lrwa0h7xc8scb7rh1wq71srzbhnk174k2qk1jd4adqqr308bgzp"; depends=[MASS miscTools systemfit]; }; micar = derive2 { name="micar"; version="1.1.2"; sha256="1zx2x6r4m0ihwhjd2n4rmk9da7p9bpadk65h7mbb0rgvwrspkzf8"; depends=[httr jsonlite]; }; @@ -12693,15 +12870,14 @@ in with self; { miclust = derive2 { name="miclust"; version="1.2.8"; sha256="0qxbbybak0illkn99bsmmqlh923g0gw6znjh05wdmgqdsjh3fx1v"; depends=[combinat doBy flexclust irr matrixStats]; }; micompr = derive2 { name="micompr"; version="1.1.3"; sha256="0k9yngi75p0pcszlg8vmzxrsppm53z2z1c6rzk15gpl53f6cq88p"; depends=[]; }; microPop = derive2 { name="microPop"; version="1.6"; sha256="0if218csmnp5vcbcgr9zjk8d7y17al04rpfhjvp76v03xvwjizp5"; depends=[deSolve testthat visNetwork]; }; - microSTASIS = derive2 { name="microSTASIS"; version="0.1.0"; sha256="09zyf80l964lfil56vln70i0r2d8ry2ffx4zz3f3xcka22m94r78"; depends=[crayon fmsb future future_apply ggplot2 ggside progressr reshape2 stringr]; }; microbats = derive2 { name="microbats"; version="0.1-1"; sha256="1mahvblaiwg1xk2s34wd1ic8ddc9lh6g0azik2pd97bsf0krkyw8"; depends=[]; }; - microbenchmark = derive2 { name="microbenchmark"; version="1.4.9"; sha256="1lpzpffnjiwnxxl0jhrvyj88fvxqksnpccbpq953xwqf6ypjqga4"; depends=[]; }; + microbenchmark = derive2 { name="microbenchmark"; version="1.4.10"; sha256="10dlp4295jb5l7lhz80f4mkz3jccv02v277z666wx3bhfaz43k04"; depends=[]; }; microbial = derive2 { name="microbial"; version="0.0.20"; sha256="1y5vhh4sq22c4wxb3c9rzj53niacn97vfg0484d9wkcjb179lc79"; depends=[broom DESeq2 dplyr edgeR ggplot2 ggpubr magrittr phangorn phyloseq plyr randomForest rlang rstatix S4Vectors SummarizedExperiment testthat tidyr vegan]; }; microclass = derive2 { name="microclass"; version="1.2"; sha256="0q6mn1hbi6nk29x2x5a1wcdqp06mjggbrpglk5i8pp4gkqlzhl8q"; depends=[dplyr microcontax microseq Rcpp RcppEigen RcppParallel rlang stringr tibble]; }; microcontax = derive2 { name="microcontax"; version="1.2"; sha256="004g979hyg0asbah7hxr445fidil4ibw1b8pqpjdbgmpm1qgvw7y"; depends=[microseq]; }; - microeco = derive2 { name="microeco"; version="0.15.0"; sha256="1jcknppkwbjdpc1427y0g7zvpna386x3zqsi3aiky1bpv3cfn027"; depends=[ape data_table dplyr ggplot2 magrittr R6 RColorBrewer reshape2 rlang scales tibble vegan]; }; + microeco = derive2 { name="microeco"; version="0.19.0"; sha256="1cfb9lrb527qpk29cgb20lkmdld2khpi98qr3260qz3dkqxkgnlc"; depends=[ape data_table dplyr ggplot2 igraph magrittr R6 RColorBrewer reshape2 rlang scales tibble vegan]; }; microhaplot = derive2 { name="microhaplot"; version="1.0.1"; sha256="0g15g7d19yz11nn2g0h8h2m8k1cvmpryz72pnalgv5yi58md5l5i"; depends=[dplyr DT ggiraph ggplot2 gtools magrittr scales shiny shinyBS shinyWidgets tidyr]; }; - micromap = derive2 { name="micromap"; version="1.9.5"; sha256="18y8m63k9l4dir8w1qbbi1g86506yajvi6qs0j1588575lak1l62"; depends=[ggplot2 maptools RColorBrewer rgdal sf sp]; }; + micromap = derive2 { name="micromap"; version="1.9.7"; sha256="1lkzh7bwmvabvn2qavxmfd2lcn1xv85vq0g6qpbfls4jfy9qxd7g"; depends=[ggplot2 RColorBrewer sf sp]; }; micromapST = derive2 { name="micromapST"; version="2.0.1"; sha256="1pshb5w8v1j1ayff2b95fjcqj0ias5z2znhm6s9x1p38808l9rrk"; depends=[cleangeo labeling maptools pbapply RColorBrewer readxl rgdal rgeos rmapshaper sf sp spdep stringr writexl]; }; micropan = derive2 { name="micropan"; version="2.1"; sha256="16zs6sqi2c5lwzhd5gbyddp8q4gx5r5sg0pbpk7924i8x4hh081h"; depends=[dplyr igraph microseq rlang stringr tibble]; }; microplot = derive2 { name="microplot"; version="1.0-45"; sha256="0qprvn5zv9ai30lhd8qykffc5f8va886kc5qka34940lin63v389"; depends=[cowplot flextable ggplot2 HH Hmisc htmltools lattice officer]; }; @@ -12709,7 +12885,6 @@ in with self; { microseq = derive2 { name="microseq"; version="2.1.5"; sha256="1asdy0njy5xcykd88jxa8s5hkrh6kab566h3nf9i93yw1i6kmwip"; depends=[data_table dplyr Rcpp rlang stringr tibble]; }; microservices = derive2 { name="microservices"; version="0.2.0"; sha256="1yrjjlqmmbbwjd34pm06d6v88b63m2mx37flaw4zpkqni6rsvmwq"; depends=[config desc dplyr fs glue purrr withr]; }; microsimulation = derive2 { name="microsimulation"; version="1.4.2"; sha256="0hcn9zhi8nw7j0llcywp500gs2pb343gbi91z6l9397d63ckqsn3"; depends=[ascii Rcpp RcppArmadillo survival]; }; - microsynth = derive2 { name="microsynth"; version="2.0.31"; sha256="0wmrp9igylzp4qbvdr13r2rxfkcq9xwg8gw29j1g6kcqyq4aflds"; depends=[boot kernlab LowRankQP nleqslv pracma survey]; }; midas = derive2 { name="midas"; version="1.0.1"; sha256="1alqxk23651jnkg0xn4rpvk71z5rhvx3y0wjrgkw2qw95s7jjn72"; depends=[shiny xml2]; }; midas2 = derive2 { name="midas2"; version="0.1.0"; sha256="0k670ppbw12s4wgliiqgc5fr0sajr5axlkwa5i54hrappkh1vlb4"; depends=[coda MCMCpack R2jags]; }; midasml = derive2 { name="midasml"; version="0.1.10"; sha256="0jhrifvqcis2lj59vybgkzgmdmxwfqmsbxijwcz8hsprshr69xl9"; depends=[doParallel doRNG foreach lubridate Matrix randtoolbox snow]; }; @@ -12724,7 +12899,7 @@ in with self; { migration_indices = derive2 { name="migration.indices"; version="0.3.1"; sha256="198lxv6s1wc6j10ygbc4l2irmmv5448f9av9zsybnpijballx349"; depends=[calibrate]; }; migui = derive2 { name="migui"; version="1.3"; sha256="1y012la9vmchnlcigcciq878w9hlw8zgzp76b3h9b6fwhaa872pm"; depends=[arm gWidgets2 mi]; }; miic = derive2 { name="miic"; version="1.5.3"; sha256="1wrvgzi91jirn5n5fvvbhhpcga7l75h149sz1g1r1wbci181l3bg"; depends=[ppcor Rcpp scales]; }; - mikropml = derive2 { name="mikropml"; version="1.5.0"; sha256="0ic8in0zyqg76vcwrv4lqlkh1yrnfi095dpczw9i4xg1jr41a3rw"; depends=[caret dplyr e1071 glmnet kernlab MLmetrics randomForest rlang rpart xgboost]; }; + mikropml = derive2 { name="mikropml"; version="1.6.0"; sha256="1m91blwkkcgby2pgpn5w1sbgk4vwxvhhbpsjrkcwpcifkkgys17n"; depends=[caret dplyr e1071 glmnet kernlab MLmetrics randomForest rlang rpart xgboost]; }; mildsvm = derive2 { name="mildsvm"; version="0.4.0"; sha256="02n93ck8458xliqwp226v5b7691a9jx5i7b1q9n0nqc74xkm8h1i"; depends=[dplyr e1071 kernlab magrittr mvtnorm pillar pROC purrr rlang tibble tidyr]; }; milorGWAS = derive2 { name="milorGWAS"; version="0.3"; sha256="1z44sbs3lmrx32wagk5rr3rc2k8iqq860fz0bi983llmgmhaqdxn"; depends=[gaston Rcpp RcppEigen]; }; milr = derive2 { name="milr"; version="0.3.1"; sha256="03hihr1w5j0mlvi5vm9m5vb9i6nyb6lsji3xmv0chpczabd85mzy"; depends=[glmnet numDeriv pipeR Rcpp RcppArmadillo RcppParallel]; }; @@ -12732,7 +12907,7 @@ in with self; { mimi = derive2 { name="mimi"; version="0.2.0"; sha256="1ig34qd37my74nmlv3jcfrj7cnd55alxpf2flf2sssk2ws1y56xh"; depends=[data_table doParallel FactoMineR foreach glmnet rARPACK softImpute]; }; mimsy = derive2 { name="mimsy"; version="0.6.2"; sha256="01dy1fryrgq07jdfnxcnks97h0gq632dvqk7hnfs0f5fnx0k0vvf"; depends=[dplyr lubridate magrittr openxlsx]; }; minMSE = derive2 { name="minMSE"; version="0.5.1"; sha256="1fj6njqdc6zn73n2q60x01znwn6xlprjldwy5c13d8rd1n5shccm"; depends=[MASS Rcpp]; }; - minSNPs = derive2 { name="minSNPs"; version="0.0.3"; sha256="1y1aawi4cfvbvb3zrmjvccgd8gdpfaag6lqkh9h05p4x72hd3j49"; depends=[BiocParallel]; }; + minSNPs = derive2 { name="minSNPs"; version="0.0.4"; sha256="1l071mf940pjdzzb1shwkaljrjcxdpsgxn49x7ia446gpw8qrgpg"; depends=[BiocParallel data_table]; }; mind = derive2 { name="mind"; version="1.1.0"; sha256="01ncwc1kkfa0gfmrnvl93lvzlcjl6r30a3fs65lq15b132rncgwq"; depends=[data_table dplyr JWileymisc MASS Matrix tm]; }; mindr = derive2 { name="mindr"; version="1.3.2"; sha256="0nv3wripimpbi8zf1h8fkj80ibrzava36kcai9f1gl8frincafr9"; depends=[htmlwidgets knitr]; }; mineCitrus = derive2 { name="mineCitrus"; version="1.0.0"; sha256="031nfhrsc5rlqls3vyrk18lx0pd4ssdk96cmfr4ifaciz0rgv8h2"; depends=[ggplot2]; }; @@ -12754,8 +12929,8 @@ in with self; { minsample2 = derive2 { name="minsample2"; version="0.1.0"; sha256="0q1rp6mdyhcp806a0m0sr4ldm5rj78wk2fljzylxfjs4c734lpbk"; depends=[]; }; mipfp = derive2 { name="mipfp"; version="3.2.1"; sha256="1gxazpg81vj5dywpb6jb29188jw28qil6pfygawa7znnjn3k5ca6"; depends=[cmm numDeriv Rsolnp]; }; mipplot = derive2 { name="mipplot"; version="0.3.1"; sha256="126arvxq6gmaiwk3n3p0slnb1mhs3qf993m4lx95nlmnv612ag66"; depends=[data_table dplyr ggplot2 readr readxl reshape reshape2 rlang shiny shiny_i18n shinyalert shinyWidgets showtext showtextdb stringr tidyr]; }; - mirai = derive2 { name="mirai"; version="0.8.2"; sha256="01dnf4a1a9g38cnlk628bp628wlfwa56nwd6zv8p2rya0bri95n4"; depends=[nanonext]; }; - mirt = derive2 { name="mirt"; version="1.38.1"; sha256="124gnfkj1c901slq1fr5a59yzg2gq0wxgg4vnwxpdr62rcry6mmj"; depends=[dcurver Deriv GPArotation gridExtra lattice Matrix mgcv pbapply Rcpp RcppArmadillo vegan]; }; + mirai = derive2 { name="mirai"; version="0.8.7"; sha256="0bg37g1isjaqcd3j57bsdsnrn4zl7zqc6l5w2yv9j79z1qsk3lcq"; depends=[nanonext]; }; + mirt = derive2 { name="mirt"; version="1.39"; sha256="0ww16acxwa2qyg69n1ilh25bg871azbhck6m6ga9bhm82ydf5lkr"; depends=[dcurver Deriv GPArotation gridExtra lattice Matrix mgcv pbapply Rcpp RcppArmadillo vegan]; }; mirtCAT = derive2 { name="mirtCAT"; version="1.12.2"; sha256="0xxbja9d1n9r633isa7jzz1b46ins97q18hvlq2p1dal1hzxxh16"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; }; mirtjml = derive2 { name="mirtjml"; version="1.4.0"; sha256="1zvm8acywpzi87lz0hpxmr8c9kyqkbx0490q3vlwxd90ffcdp9ml"; depends=[GPArotation Rcpp RcppArmadillo]; }; mirtsvd = derive2 { name="mirtsvd"; version="1.0"; sha256="0c06dpg0jr15hmk03s96fyp2rb6z4svihjzfs316nkl3dd03ami1"; depends=[GPArotation mirtjml]; }; @@ -12765,12 +12940,12 @@ in with self; { miscF = derive2 { name="miscF"; version="0.1-5"; sha256="0g6wk2zxqq6j949hnbvwmfd72y25zjfbrfrfxsj21q84w41fgjkb"; depends=[MASS MCMCpack mvtnorm R2jags]; }; miscFuncs = derive2 { name="miscFuncs"; version="1.5-3"; sha256="09pprwqbwz8iiggjqvnv3m2mkiy26zncvs9rn0mba2wk0yfzq4py"; depends=[mvtnorm roxygen2]; }; miscIC = derive2 { name="miscIC"; version="0.1.0"; sha256="0pnwc3b318xxnmb7scrj4qkqlvqfyczspdg496kl0ixsiaafr1ad"; depends=[nnls]; }; - miscTools = derive2 { name="miscTools"; version="0.6-26"; sha256="16pwfxpyl0zv3hjxx2kjchkg7p6kbj0s2rrpskj7rkhjr9imlg5y"; depends=[digest]; }; + miscTools = derive2 { name="miscTools"; version="0.6-28"; sha256="089vb57ynqzqa9ppalqfgn0n5wazfjng2kc7z4wgb2ll40hjyk5x"; depends=[digest]; }; misclassGLM = derive2 { name="misclassGLM"; version="0.3.2"; sha256="1b344dy5fm45jkjrqcx16905n9x0iwihr73mq2m0qfq7ay87nsrh"; depends=[bigmemory foreach MASS Matrix mlogit numDeriv ucminf]; }; miscset = derive2 { name="miscset"; version="1.1.0"; sha256="1gwi7jnqdf2fa8yk8gmcc7dcv72bbdl7yj3yccj3r5jjk41vdp91"; depends=[data_table devtools ggplot2 gridExtra Rcpp xtable]; }; mise = derive2 { name="mise"; version="0.1.0"; sha256="1ydbm76w3y0p5h82shxjblwlzbrmzwx0bgq9w2axjwz2nx8jfw0a"; depends=[]; }; miselect = derive2 { name="miselect"; version="0.9.0"; sha256="0dfqni7r5zwdvwmrmvqhycmxhazivz6vnz2ccjy0hyfad29g0v7s"; depends=[]; }; - mispitools = derive2 { name="mispitools"; version="0.3.0"; sha256="05wlhjgsn14yvqkzqj5a060j8vryz8wwhh0xcqnarf55nirv4a8a"; depends=[DirichletReg dplyr forrel highcharter pedtools plotly purrr tidyr tidyverse]; }; + mispitools = derive2 { name="mispitools"; version="0.4.0"; sha256="0kd6sj0qgi6gf9cykxh8myc09hm5zkzjys1nsdkbdm3ymgar5xy2"; depends=[DirichletReg dplyr forrel ggplot2 highcharter patchwork pedtools plotly purrr reshape2 shiny tidyr tidyverse]; }; mispr = derive2 { name="mispr"; version="1.0.0"; sha256="166piax3f7di8h0i07fbdx45lxz1p47j378v6yl6zdc3525adpjx"; depends=[e1071 MASS penalized]; }; misreport = derive2 { name="misreport"; version="0.1.1"; sha256="1f78zcw4cg51mjvflhwd64hip2gj8x9ng1mhh4w43yv3x8hmbd6h"; depends=[mvtnorm numDeriv VGAM]; }; missCforest = derive2 { name="missCforest"; version="0.0.8"; sha256="1xdff1iddvagsw5b27wl0hbv21baj8cnkg17imfg9fkh1fik2s00"; depends=[partykit]; }; @@ -12780,15 +12955,15 @@ in with self; { missForest = derive2 { name="missForest"; version="1.5"; sha256="13c38hpl60ca1kwyv61cxsla6ccmsj4qzp0vrxcq7b827fh5aw21"; depends=[doRNG foreach iterators itertools randomForest]; }; missMDA = derive2 { name="missMDA"; version="1.18"; sha256="1s7ph89y0mrksdi73nnjnxl2354401ny8ziijzf036rcsiyvl8m5"; depends=[doParallel FactoMineR foreach ggplot2 mice mvtnorm]; }; missMethods = derive2 { name="missMethods"; version="0.4.0"; sha256="1vsgc315px3x44rqlsj6r6lyh9flqjibgpvbx0crd8b644ab6qh2"; depends=[mvtnorm]; }; - missRanger = derive2 { name="missRanger"; version="2.2.0"; sha256="0s0zqfi2hhzxyrnfg83159g7q365glfnw7b81w2s51b10zjhxysh"; depends=[FNN ranger]; }; + missRanger = derive2 { name="missRanger"; version="2.2.1"; sha256="05k74gkllsaqvf9prixg5dsjfvjjz1m60ing8iaznnka1nx7qqrg"; depends=[FNN ranger]; }; missSBM = derive2 { name="missSBM"; version="1.0.3"; sha256="16krbmi085zxrwliwz9r6x5hmkaf9w9ds384y50dnapi91232diw"; depends=[future_apply ggplot2 igraph magrittr Matrix nloptr R6 Rcpp RcppArmadillo rlang RSpectra sbm]; }; missSOM = derive2 { name="missSOM"; version="1.0.1"; sha256="15cqqz6f2npsz78yhj3ialzmlx7a8jsf27gfmmj4h68r01czyhs1"; depends=[kpodclustr Rcpp]; }; missingHE = derive2 { name="missingHE"; version="1.5.0"; sha256="0my6a768w7lixh6cw453bl2nrb5aqdiri309p5kp4psp17pzllak"; depends=[bayesplot BCEA coda ggmcmc ggplot2 ggpubr ggthemes gridExtra loo mcmcplots mcmcr R2jags]; }; - missoNet = derive2 { name="missoNet"; version="1.0.0"; sha256="0b5ryqcm031g1ca6zfh95am1sj1qhh6c901sjyqr9d4ma367xdy4"; depends=[circlize ComplexHeatmap glasso glmnet mvtnorm pbapply Rcpp RcppArmadillo scatterplot3d]; }; + missoNet = derive2 { name="missoNet"; version="1.1.0"; sha256="0gmp1j62prakrl87zj5zhnsjkwv9hp56xpcnhgaz9jlwarnkl2z1"; depends=[circlize ComplexHeatmap glasso glmnet mvtnorm pbapply Rcpp RcppArmadillo scatterplot3d]; }; mistat = derive2 { name="mistat"; version="2.0.4"; sha256="1hr1gps0w3mfphnc221c6k7h7rwk1f7g6nxkxkb9g8sdacr7ijhh"; depends=[]; }; mistr = derive2 { name="mistr"; version="0.0.6"; sha256="103gvzcyrxscpsd8kv6zj8zx3r9mlbdjwd56msy0ngzcgrb4sb9d"; depends=[bbmle]; }; mistral = derive2 { name="mistral"; version="2.2.1"; sha256="19iq9a3k7xyxafvm73ib8mj1k7ys69aznplqhidl5z8vdl92dmb7"; depends=[DiceKriging doParallel e1071 emoa foreach ggplot2 iterators Matrix mvtnorm quadprog Rcpp]; }; - misty = derive2 { name="misty"; version="0.4.8"; sha256="0gzhl5kfbvq4ilyqmd6f996a0bvhx2f90sp02br0ya7dydyblfg5"; depends=[ggplot2 haven lavaan lme4 nlme norm r2mlm readxl rstudioapi writexl]; }; + misty = derive2 { name="misty"; version="0.4.10"; sha256="0vspbqyngw7p5a7jbcxf8259vcrj1hrxgfsqmycm2s0cvq3z954k"; depends=[ggplot2 haven lavaan lme4 nlme norm r2mlm readxl rstudioapi writexl]; }; mitml = derive2 { name="mitml"; version="0.4-5"; sha256="1szfw993ma4qn377bab08bkvm4s0sxs5x2hdcj9kgk47661fqsh5"; depends=[haven jomo pan]; }; mitools = derive2 { name="mitools"; version="2.4"; sha256="0c2x2n1p53lcw0vx4vmy5j7m2f95i7g2iwbryl89imr99rvz617j"; depends=[DBI]; }; mitre = derive2 { name="mitre"; version="1.0.0"; sha256="0r5phzxiibwwhx3qh623grfy070c3vzm4q07rzhsp5q5ycb5jhn5"; depends=[dplyr igraph jsonlite plyr RJSONIO rlang stringr tidyr]; }; @@ -12808,6 +12983,7 @@ in with self; { mixcure = derive2 { name="mixcure"; version="2.0"; sha256="0jjbamn53iqrrx658wk3cz43grsbn1275p81256h4lia35s7cww3"; depends=[boot flexsurv gam survey survival timereg]; }; mixdir = derive2 { name="mixdir"; version="0.3.0"; sha256="1vgxxzsrl660agk4cjw4q4gx28fv5mkzpjy4qanq5c9mqpcxbxkc"; depends=[extraDistr Rcpp]; }; mixdist = derive2 { name="mixdist"; version="0.5-5"; sha256="1wchhysd33xz395hq4wgd3zv1qc92pbiqxqd7g2v6m1pb0j8ma9g"; depends=[]; }; + mixedBayes = derive2 { name="mixedBayes"; version="0.1.0"; sha256="1ialhbsxfzr8nf97zlbqi2nry028ykih6naf7ahzjm6n32c2vxdy"; depends=[Rcpp RcppArmadillo]; }; mixedCCA = derive2 { name="mixedCCA"; version="1.6.2"; sha256="07apl37kwj47w14jxsvwdiacnwd517zs3ff2c70fhb6ncbgp8adv"; depends=[fMultivar irlba latentcor MASS Matrix mnormt pcaPP Rcpp RcppArmadillo]; }; mixedClust = derive2 { name="mixedClust"; version="1.0.2"; sha256="10hysjsld58cv0xif01xw08r0alr8xsnbp931x59lb36yi9g6f0m"; depends=[fda Rcpp RcppArmadillo RcppProgress]; }; mixedLSR = derive2 { name="mixedLSR"; version="0.1.0"; sha256="0a514w88k1lwcdmq7ginn4qmf0mdj747lhgxzx15nh0hp0xq26lc"; depends=[ggplot2 grpreg MASS purrr]; }; @@ -12815,7 +12991,7 @@ in with self; { mixedsde = derive2 { name="mixedsde"; version="5.0"; sha256="0ss1ng4nx91gxj85wxxfyh9ljxsj3ag6lsj1a5d2815p9jzl7dsv"; depends=[MASS moments plot3D sde]; }; mixexp = derive2 { name="mixexp"; version="1.2.7"; sha256="06bp8w9r6fxhnp2ga3hig7fbl2nsvfvwxggbfd7nfc60c91p80mq"; depends=[daewr lattice]; }; mixgb = derive2 { name="mixgb"; version="1.0.2"; sha256="1i6sckdbgckp84wvmsbay20vfqqzzphif2r7v3fc158gfw1vvkr4"; depends=[data_table ggplot2 Matrix mice Rfast rlang scales tidyr xgboost]; }; - mixhvg = derive2 { name="mixhvg"; version="0.1.0"; sha256="0zz2pwa7642kwg5bz3p760zmpvdfyndiy9d4hcqw6xzklzwg7k24"; depends=[Matrix scran scuttle Seurat SingleCellExperiment]; }; + mixhvg = derive2 { name="mixhvg"; version="0.1.1"; sha256="1vwn4wdxs81r08x4f8zlpdqr1hvf6dk59qqrbxyj9xdk35hw9il4"; depends=[Matrix scran scuttle Seurat SingleCellExperiment]; }; mixl = derive2 { name="mixl"; version="1.3.3"; sha256="0vxvs6lvnkijhdy78lw19hp11ylf4afyg0v5xc5izbhwk3cp5nga"; depends=[maxLik numDeriv randtoolbox Rcpp readr sandwich stringr]; }; mixlm = derive2 { name="mixlm"; version="1.2.6"; sha256="1qccwiaqyvmpyklbbp6ay3xvln9wfizaxi6fjizzx2bjpng5043p"; depends=[car leaps multcomp pls pracma]; }; mixmeta = derive2 { name="mixmeta"; version="1.2.0"; sha256="093f6jjq0hc49k5kmjp17s2lv3swpssfxnra80bwv59ggav8w8d8"; depends=[]; }; @@ -12826,26 +13002,28 @@ in with self; { mixsqp = derive2 { name="mixsqp"; version="0.3-48"; sha256="02cjg33m5iqziyy0xi11wvbm5qnlgfy51r1dbpjzyhqsrv1dfx48"; depends=[irlba Rcpp RcppArmadillo]; }; mixtools = derive2 { name="mixtools"; version="2.0.0"; sha256="03by64xi7yka0hzc1qyz1jdqzah6isvr3cdsc7g5v6hb4f178kl5"; depends=[kernlab MASS plotly scales segmented survival]; }; mixtox = derive2 { name="mixtox"; version="1.4.0"; sha256="1lca26s80f92c18wkpp5gs2ifylnyqyg933w7r5ir3xvsfbk0lfh"; depends=[minpack_lm]; }; + mixtur = derive2 { name="mixtur"; version="1.2.1"; sha256="02hybyc647jhl3jcyv26kcg1ijq4qlami18m6xyckygw8m2fb85l"; depends=[dplyr ggplot2 rlang tidyr]; }; mixture = derive2 { name="mixture"; version="2.0.5"; sha256="16ydhsgssd5jbhf03llxy2gjhv3h3bqi01s45jcb9dwc3mbd306b"; depends=[BH lattice Rcpp RcppArmadillo RcppGSL]; }; mize = derive2 { name="mize"; version="0.2.4"; sha256="1dfhldxsm1il9avfxvaiir9r878dp7swyc9c8ilm6llx208sd5d5"; depends=[]; }; - mizer = derive2 { name="mizer"; version="2.4.0"; sha256="0y8lvrvk6pb28zr5cxnjw5pm2bgn59j6skcchsvdhnpmhbw32k71"; depends=[assertthat deSolve dplyr ggplot2 ggrepel lifecycle lubridate plotly plyr progress Rcpp reshape2 rlang]; }; - mkin = derive2 { name="mkin"; version="1.2.1"; sha256="0k1c7rr8y12glg6n2lvhka2h7dipxjm3sjrav941l4lahpc60848"; depends=[deSolve inline lmtest nlme numDeriv pkgbuild R6 rlang saemix vctrs]; }; + mizer = derive2 { name="mizer"; version="2.4.1"; sha256="1y708615jp8cm48yg6rbqjr58kppca09h2pyzqpd6j3hlz8fm9nj"; depends=[assertthat deSolve dplyr ggplot2 ggrepel lifecycle lubridate plotly plyr progress Rcpp reshape2 rlang]; }; + mkin = derive2 { name="mkin"; version="1.2.4"; sha256="0gq5fij7ksc60ys91sbrd1d46w9nv4y5cqcknwc31xwhwi35q2vm"; depends=[deSolve inline lmtest nlme numDeriv pkgbuild R6 rlang saemix vctrs]; }; mknapsack = derive2 { name="mknapsack"; version="0.1.0"; sha256="1kzmx7d512681a4hjirfgcd7a8rvndb4da66p16gms5nnxzsby9c"; depends=[assertthat data_table lpSolve]; }; mkssd = derive2 { name="mkssd"; version="1.2"; sha256="1vgg5azr4qydqb6xbdbff9256bwz7gl3k3hpn7998rm9jhdmynnd"; depends=[]; }; - mlVAR = derive2 { name="mlVAR"; version="0.5"; sha256="11mn7gaqlmw01gvg7psqkkr5bgv4iclv0590av4xzbvq8496f5g2"; depends=[abind arm clusterGeneration corpcor dplyr graphicalVAR lme4 MplusAutomation mvtnorm plyr qgraph rlang]; }; + mlVAR = derive2 { name="mlVAR"; version="0.5.1"; sha256="0q902qcynkbwg9bnv0w24vzyqwky0skqck728id943lrvqi92667"; depends=[abind arm clusterGeneration corpcor dplyr graphicalVAR lme4 MplusAutomation mvtnorm plyr qgraph rlang]; }; mlapi = derive2 { name="mlapi"; version="0.1.1"; sha256="1qyiii6x9b89i4pd4yi2zd23aabpmnpj18gqi5va0zy0l8r7kknr"; depends=[Matrix R6]; }; - mlbench = derive2 { name="mlbench"; version="2.1-3"; sha256="157iqsld0wj8g8cbs7nh6p2x6kasmkhs3078hsmqac946gk2pydi"; depends=[]; }; + mlbench = derive2 { name="mlbench"; version="2.1-3.1"; sha256="1w2w7nkrp69c0di0lss82jf4fbxdpqwxzqa2lrp55av8i7awdzks"; depends=[]; }; mlbplotR = derive2 { name="mlbplotR"; version="1.0.1"; sha256="12dal7fw3a7vshyq0m03ncc4k0b4ksz1nq539pisxrq1cn85k31c"; depends=[cli data_table ggplot2 gt lifecycle magick magrittr rlang scales]; }; mlbstats = derive2 { name="mlbstats"; version="0.1.0"; sha256="1pfsc1pc5986gykx8l6afahszhaj4940l8g33fdxyy7194kbcz70"; depends=[]; }; mldr = derive2 { name="mldr"; version="0.4.3"; sha256="07lbxpydz78fya11bl3l1ckhbps3nx43ddh3z09ygg70jjbdhxwq"; depends=[circlize shiny XML]; }; mldr_datasets = derive2 { name="mldr.datasets"; version="0.4.2"; sha256="0zyfv8xy5yik0k3j0kf9r43xrvj528qzdb1v74sfi24vim6k6503"; depends=[]; }; + mldr_resampling = derive2 { name="mldr.resampling"; version="0.2.1"; sha256="14g4a6c5p2xky79qi4cm969wa77vdb9zgfi712xacarfpicj9ypv"; depends=[data_table e1071 mldr pbapply vecsets]; }; mle_tools = derive2 { name="mle.tools"; version="1.0.0"; sha256="02yndj1if31zr9y805mq5km5n8jz4w9jz1bmaz9nnqsqimrnigrb"; depends=[]; }; mlearning = derive2 { name="mlearning"; version="1.1.1"; sha256="1zjnh4gcw068li1bks60gazn3205xhmqz67hbkb1san33lmlxya3"; depends=[class e1071 ipred MASS nnet randomForest]; }; mlegp = derive2 { name="mlegp"; version="3.1.9"; sha256="1cs0l04axp6f6f6m4h4kw8z4pasxgp5la3xib04wxzb2l4bnsab3"; depends=[]; }; mlergm = derive2 { name="mlergm"; version="0.8"; sha256="0bpdljmbn4lfm263jcsp0hrknixn49m7hqsx0jjk3pfwhgjlajh8"; depends=[cowplot ergm GGally ggplot2 lpSolve Matrix network plyr reshape2 sna stringr]; }; mlf = derive2 { name="mlf"; version="1.2.1"; sha256="09ihnibpknpp26hdlbxyr99yz7z0n8qpsjs5aq3zngng0yh3wdn9"; depends=[]; }; mlfit = derive2 { name="mlfit"; version="0.5.3"; sha256="0nyk5vmy2gkpz022djacy80gibskv96z0rsmjz2rw14zhc5kizsh"; depends=[BB dplyr forcats hms kimisc lifecycle Matrix plyr rlang tibble wrswoR]; }; - mlflow = derive2 { name="mlflow"; version="2.2.2"; sha256="1f11pc80zdj42l0cxkrf3yl52bww2kdhh3yq67n9qimqkxycw98r"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr rlang swagger tibble withr yaml zeallot]; }; + mlflow = derive2 { name="mlflow"; version="2.3.2"; sha256="0m4mszyh6rynk1j8pp405ls22sf0mq1bk11497gfvhlnwzxyizcd"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr rlang swagger tibble withr yaml zeallot]; }; mlim = derive2 { name="mlim"; version="0.3.0"; sha256="16p3nprnxc0cghfbwcs3hf57aasqpvd4qv3wajhzrajqhmclzn0q"; depends=[curl h2o md_log memuse mice missRanger]; }; mlmRev = derive2 { name="mlmRev"; version="1.0-8"; sha256="0ln4nazhc1prnlmvhfzhx268vx3klb0xnz1nsiwh0pwyskskyzym"; depends=[lme4]; }; mlma = derive2 { name="mlma"; version="6.2-1"; sha256="1jvra77xhf0a6qb2kb953inpg2lzv0y88kb6zzcw35bb8gipzm78"; depends=[abind car coxme gplots lme4 survival]; }; @@ -12854,35 +13032,37 @@ in with self; { mlmi = derive2 { name="mlmi"; version="1.1.1"; sha256="0ksx5qih54ww983ycs08hhr50ms2c2k6pk07mrcwdgli7irzc2cc"; depends=[cat gsl MASS Matrix mix nlme norm]; }; mlmm_gwas = derive2 { name="mlmm.gwas"; version="1.0.6"; sha256="14xp8k7sww1skyw5l2006gpaw2c6yrri5nmfx4yav4vqdlhcj2k1"; depends=[coxme Matrix multcomp multcompView sommer]; }; mlmmm = derive2 { name="mlmmm"; version="0.3-1.2"; sha256="1m5ziiqs3ll1xjm1yf7x4sdc910jypn3kjnbadf95xxkvqmfrsqq"; depends=[]; }; + mlmpower = derive2 { name="mlmpower"; version="1.0.1"; sha256="0an6qdalxprxgjvwj0d0m4d4m6mmwqsi3syaq476gagf786w59pw"; depends=[cli lme4 lmerTest varTestnlme]; }; mlmtools = derive2 { name="mlmtools"; version="1.0.2"; sha256="1fwa0cwrrhzxr5zkvmf0q1w2wlrhj58lwmrvqxfn00v0v9d6bi0g"; depends=[ggplot2 lme4]; }; mlmts = derive2 { name="mlmts"; version="1.1.1"; sha256="10xy4qzdik1rjs11ql798ig7y5cm3hjc61n5dhxfzpi1w0wk3smi"; depends=[AID caret ClusterR complexplus DescTools dtw e1071 fda_usc forecast freqdom geigen ggplot2 igraph MASS Matrix MTS multiwave pracma pspline psych quantspec randomForest ranger Rdpack Rfast TSA TSclust TSdist tseries tseriesChaos tsfeatures waveslim]; }; mlogit = derive2 { name="mlogit"; version="1.1-1"; sha256="0hyi6gi03n895iydrfr1ba2ifbsd6lyjyhkq62d95ghhniysjgkg"; depends=[dfidx Formula lmtest MASS Rdpack statmod zoo]; }; mlogitBMA = derive2 { name="mlogitBMA"; version="0.1-7"; sha256="0q8c5897z8f519nf6p55ksc610a9dbpnah2rr4srij4gs9a4clx1"; depends=[abind BMA maxLik]; }; - mlpack = derive2 { name="mlpack"; version="4.0.1"; sha256="1vim94lib1w6f3m5j6pv9s53zwl935bxq5p5ma6ag0nsdzskr29r"; depends=[Rcpp RcppArmadillo RcppEnsmallen]; }; + mlpack = derive2 { name="mlpack"; version="4.1.0"; sha256="0cx96ak6rrvac1wsakkl9zm7y1kqyg1npk86yn6af2z4zln8nqi2"; depends=[Rcpp RcppArmadillo RcppEnsmallen]; }; mlpwr = derive2 { name="mlpwr"; version="1.0.0"; sha256="01kyyy3q7qd7wpccl1ibiq7fkbh552c6l4yflxvdy1j2fm8w5gic"; depends=[DiceKriging digest ggplot2 randtoolbox rgenoud rlist WeightSVM]; }; mlquantify = derive2 { name="mlquantify"; version="0.2.0"; sha256="1fpwvix0f4bmqb1y1b6wryndqp6j24dwsspbfx1zrnhzwj1v4i9i"; depends=[caret FNN randomForest]; }; mlr = derive2 { name="mlr"; version="2.19.1"; sha256="00jjhvaqifj6glqsyzixlp56bvlch5smck8kk3klcmwx9pasyllx"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival XML]; }; - mlr3 = derive2 { name="mlr3"; version="0.15.0"; sha256="1g01sgq8ddf5k2vjkqchhbzw55shhpq355s5dh988vj5ac2ikqy0"; depends=[backports checkmate data_table evaluate future future_apply lgr mlbench mlr3measures mlr3misc palmerpenguins paradox parallelly R6 uuid]; }; + mlr3 = derive2 { name="mlr3"; version="0.16.0"; sha256="1nzj73qsbb02fcim9826zkxzzpar32pq2r0yfkis1nxaxky4cclr"; depends=[backports checkmate data_table evaluate future future_apply lgr mlbench mlr3measures mlr3misc palmerpenguins paradox parallelly R6 uuid]; }; + mlr3batchmark = derive2 { name="mlr3batchmark"; version="0.1.0"; sha256="16r8j5hzx975acs5b91wj2pk9w3hwh070cqv4swlmrj05nbid975"; depends=[batchtools checkmate data_table lgr mlr3 mlr3misc uuid]; }; mlr3benchmark = derive2 { name="mlr3benchmark"; version="0.1.5"; sha256="052siwkg1cd38bxvhhfh5bzl10z2mxyrga4kzk7sj2giivcai8g0"; depends=[checkmate data_table ggplot2 mlr3misc R6]; }; mlr3cluster = derive2 { name="mlr3cluster"; version="0.1.8"; sha256="0qxh80qfb06wdivja6cy9qwpma27ic66xis0iz7lfd09dvfmrb8w"; depends=[backports checkmate clue cluster data_table fpc mlr3 mlr3misc paradox R6]; }; mlr3data = derive2 { name="mlr3data"; version="0.6.1"; sha256="1nbasjmn2lkrn00qw2dv9qc3d21fdc6nrrr8qagd5v5z2afy08zc"; depends=[]; }; mlr3db = derive2 { name="mlr3db"; version="0.5.0"; sha256="0gvmn85sqn3klziy8nd726nim28cvfgdaddp4ilbq3v0jr745giz"; depends=[backports checkmate data_table mlr3 mlr3misc R6]; }; - mlr3fairness = derive2 { name="mlr3fairness"; version="0.3.1"; sha256="09ybdgp659fnv20cm427kd5pirhw28q3q5zxgy5k699frzwm5fgq"; depends=[checkmate data_table ggplot2 mlr3 mlr3measures mlr3misc mlr3pipelines paradox R6]; }; + mlr3fairness = derive2 { name="mlr3fairness"; version="0.3.2"; sha256="0rm6l50prwjjy55p14zs9mkdrczbyl7f63fqsmh7r5xjahcsnfi7"; depends=[checkmate data_table ggplot2 mlr3 mlr3learners mlr3measures mlr3misc mlr3pipelines paradox R6 rlang]; }; mlr3filters = derive2 { name="mlr3filters"; version="0.7.1"; sha256="07qgk26ls8wgf9k82xlnsjwi7mpnpgi7i2yplfb5hsqn8nfj6hcc"; depends=[backports checkmate data_table mlr3 mlr3misc paradox R6]; }; mlr3fselect = derive2 { name="mlr3fselect"; version="0.11.0"; sha256="0z47gygf1s4967gj9n5dsjymy9bcr7j8c7s3z7k4qmbnh71nn9w6"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; mlr3hyperband = derive2 { name="mlr3hyperband"; version="0.4.5"; sha256="0ynfzb7y0vmrx7pr6681112nhzdfvdj5flpr6jab2ancgkg22syl"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3tuning paradox R6]; }; mlr3learners = derive2 { name="mlr3learners"; version="0.5.6"; sha256="1m0psjqcl2pfy73wmc29vyz122v0kqmws6d0dgl7wsy1csfjsjm2"; depends=[checkmate data_table mlr3 mlr3misc paradox R6]; }; mlr3mbo = derive2 { name="mlr3mbo"; version="0.1.2"; sha256="1hnmlaymsnpk4bxlyg3za64svhscns0zpgvb4l2adl4x4ifipxnw"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3tuning paradox R6]; }; mlr3measures = derive2 { name="mlr3measures"; version="0.5.0"; sha256="0k0i1xx63lds1870p2ljy1dlp2i376gdd0sq9s4xiqljqjb8va57"; depends=[checkmate PRROC]; }; - mlr3misc = derive2 { name="mlr3misc"; version="0.11.0"; sha256="0haxj0zlflalw10nhdwmk45qsl164bgyjgnm101l2wybw795ixfi"; depends=[backports checkmate data_table digest R6]; }; + mlr3misc = derive2 { name="mlr3misc"; version="0.12.0"; sha256="028cqh7fvy1s16qr46znk3ijmsl7ifsxbrkbrz37w2mri0mxv3jw"; depends=[backports checkmate data_table digest R6]; }; mlr3oml = derive2 { name="mlr3oml"; version="0.7.1"; sha256="164h0br2s13cww3hr0xa4ardr62a7kk4j39s1byswmsnwkbsqbxg"; depends=[backports bit64 checkmate curl data_table jsonlite lgr mlr3 mlr3misc paradox R6 stringi uuid withr]; }; - mlr3pipelines = derive2 { name="mlr3pipelines"; version="0.4.3"; sha256="1ycrm4i0k38mkw1r1a5sxp761wdz3p0q72xz6qqg3qsyva4ba0wz"; depends=[backports checkmate data_table digest lgr mlr3 mlr3misc paradox R6 withr]; }; + mlr3pipelines = derive2 { name="mlr3pipelines"; version="0.5.0-1"; sha256="1pn6zi1qy4ql7zkkzmx52b5l9agppr1rlv3pdnm1dy8y0yc7imhd"; depends=[backports checkmate data_table digest lgr mlr3 mlr3misc paradox R6 withr]; }; mlr3shiny = derive2 { name="mlr3shiny"; version="0.2.0"; sha256="0s581aqi3a3kg35db0gnsmmg62zwl5bij4vbszjhc63i3xg0ayiz"; depends=[data_table DT e1071 mlr3 mlr3learners mlr3measures plyr purrr ranger readxl shiny shinyalert shinydashboard shinyjs shinythemes shinyWidgets stringr]; }; - mlr3spatial = derive2 { name="mlr3spatial"; version="0.4.0"; sha256="0fvfrnj6indmhbhs5z125kgiach56f1lr9hwzk5hhwj8d49mj4fl"; depends=[checkmate data_table lgr mlr3 mlr3misc R6 sf terra]; }; - mlr3spatiotempcv = derive2 { name="mlr3spatiotempcv"; version="2.0.3"; sha256="0lxdg82fcgfb57f9n2rwriw43cx10103ymjmz8y6dpx5n006m3d8"; depends=[checkmate data_table ggplot2 mlr3 mlr3misc paradox R6]; }; + mlr3spatial = derive2 { name="mlr3spatial"; version="0.4.1"; sha256="0nwl97zirdnmhd322wxnwrscwwv5vym6nagmhj5wr80d4jwdmy45"; depends=[checkmate data_table lgr mlr3 mlr3misc R6 sf terra]; }; + mlr3spatiotempcv = derive2 { name="mlr3spatiotempcv"; version="2.1.0"; sha256="1dk8n0jw5461ngnv3iazm3dhnlsj53ymn19lnh346mwyk7g5vr06"; depends=[checkmate data_table ggplot2 mlr3 mlr3misc paradox R6]; }; mlr3tuning = derive2 { name="mlr3tuning"; version="0.18.0"; sha256="1wvrdg977a2nibgyvccz2mw8043nsvm716mmwkspx4sgacf0sgx7"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; - mlr3tuningspaces = derive2 { name="mlr3tuningspaces"; version="0.3.5"; sha256="0a9lylpff7wj7b5c1xqdlazjvalyi7k94whsrzam6ggfmcd85w2b"; depends=[checkmate data_table mlr3 mlr3misc mlr3tuning paradox R6]; }; - mlr3verse = derive2 { name="mlr3verse"; version="0.2.7"; sha256="0d8k5p3brhb1qxh6wwsqy6mfnlw2hipwqbqwpb0adwkqiwbnx520"; depends=[bbotk data_table mlr3 mlr3cluster mlr3data mlr3filters mlr3fselect mlr3hyperband mlr3learners mlr3misc mlr3pipelines mlr3tuning mlr3tuningspaces mlr3viz paradox]; }; + mlr3tuningspaces = derive2 { name="mlr3tuningspaces"; version="0.4.0"; sha256="1h5nz992i4bkgfg0gjnyfkiqfg09d15d6h4r6gnd7rbim73807xp"; depends=[checkmate data_table mlr3 mlr3misc mlr3tuning paradox R6]; }; + mlr3verse = derive2 { name="mlr3verse"; version="0.2.8"; sha256="0ld4vch1qdq3gh8vhj38s2wz7acn5z7f8hxmnwnrq22g44gckd8s"; depends=[bbotk data_table mlr3 mlr3cluster mlr3data mlr3filters mlr3fselect mlr3hyperband mlr3learners mlr3mbo mlr3misc mlr3pipelines mlr3tuning mlr3tuningspaces mlr3viz paradox]; }; mlr3viz = derive2 { name="mlr3viz"; version="0.6.1"; sha256="0vw220kl330ib989hhaqhdyrba90bxc2g2cgnyjhid1flk3wqw73"; depends=[checkmate data_table ggplot2 mlr3misc scales viridis]; }; mlrCPO = derive2 { name="mlrCPO"; version="0.3.7-6"; sha256="1xvfh5b1806ycdh8brnl63cd3fzr919sdi82acq5n59pz39fz4cc"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; mlrMBO = derive2 { name="mlrMBO"; version="1.1.5.1"; sha256="16fwj7m28g4km7yalqppxmh3lw2jln0z072l6awia38qkdg6xwhc"; depends=[backports BBmisc checkmate data_table lhs mlr parallelMap ParamHelpers smoof]; }; @@ -12890,7 +13070,7 @@ in with self; { mlrpro = derive2 { name="mlrpro"; version="0.1.2"; sha256="1j8w8ji1n6cahcbyi1q4zq8gmhpcl15pb97f7bl1km29f4x4f272"; depends=[car dplyr MASS]; }; mlsbm = derive2 { name="mlsbm"; version="0.99.2"; sha256="1p6fflhjbbyzx51hb77aak1kdabjrmzd7b47vdcanhb0vd263aby"; depends=[Rcpp RcppArmadillo]; }; mlsjunkgen = derive2 { name="mlsjunkgen"; version="0.1.2"; sha256="1icsssgi5xf420ajagr9nw0wgbxpfm7dsd5b7s77vyh5hsfzm1z3"; depends=[]; }; - mlt = derive2 { name="mlt"; version="1.4-5"; sha256="1m0r6qzkh9pcracs7bdia6p3iqwkdq4azdyz3hfhdsyqjri6i9jz"; depends=[alabama basefun BB coneproj Matrix numDeriv sandwich survival variables]; }; + mlt = derive2 { name="mlt"; version="1.4-7"; sha256="0q7icsyqp3jxvk6ll8ai115qqg1ch7rndvbbxx3nd175h8cng4rb"; depends=[alabama basefun BB coneproj Matrix numDeriv sandwich survival variables]; }; mlt_docreg = derive2 { name="mlt.docreg"; version="1.1-6"; sha256="1ijfv3lwizk540g546pyi5i4sxcxwa3b2ylk0gsk68q5w704xpk6"; depends=[eha flexsurv lattice mlt multcomp numDeriv survival truncreg]; }; mltest = derive2 { name="mltest"; version="1.0.1"; sha256="14gyssfph088v936mpywmd4y8z9vdv0zk8638vlg23j8cf5j4al2"; depends=[]; }; mltools = derive2 { name="mltools"; version="0.3.5"; sha256="045v28w7vz1zjxim8vfc6ncvg2mavr1q332x0hzlqpfzrk7gz4vh"; depends=[data_table Matrix]; }; @@ -12905,28 +13085,30 @@ in with self; { mmc = derive2 { name="mmc"; version="0.0.3"; sha256="03nhfhiiadga8mcp33kj20g33v9n5i62fdqgi20h5p80g849k719"; depends=[MASS survival]; }; mmcif = derive2 { name="mmcif"; version="0.1.1"; sha256="14kp0n24nxcfnfq8drxfhsvd4apg4f7iwdamzw005rlhi5srmw3r"; depends=[alabama psqn Rcpp RcppArmadillo testthat]; }; mmcm = derive2 { name="mmcm"; version="1.2-8"; sha256="09xcvgzgg5x890jibmmbcd3rr8q8vmwxwk6s8zgn9a8hfdwqny9a"; depends=[mvtnorm]; }; - mmconvert = derive2 { name="mmconvert"; version="0.8"; sha256="0la84a09yhyz0adljnrlhzqipmn6c68lnglfj6prz26n43r0jmq0"; depends=[Rcpp]; }; + mmconvert = derive2 { name="mmconvert"; version="0.10"; sha256="1bmvcvkisqmfnpwwwb8fvnqq5fbdd6ppsi6iw9parbmzrnir8zmj"; depends=[Rcpp]; }; mme = derive2 { name="mme"; version="0.1-6"; sha256="1k60y1yrf7fv939v32kf3il7r3cws0kih4bpm0ap28fvbx3vr3yb"; depends=[MASS Matrix]; }; mmeln = derive2 { name="mmeln"; version="1.4"; sha256="0q5w3ajc1v798dyvryny2a0c52hzhxrjm4md08mqvww65pdzhqc4"; depends=[]; }; mmeta = derive2 { name="mmeta"; version="3.0.0"; sha256="088mynadrcwrw7g31f6p0g3ykq2q44mwsbpp056v8s19hq5pxjn1"; depends=[aod ggplot2]; }; mmmgee = derive2 { name="mmmgee"; version="1.20"; sha256="0y3pwnc9h7y2l9cvgfl62nl1vnnkla2y8082jhdvxsb3mk88rgad"; depends=[Matrix mvtnorm]; }; mmod = derive2 { name="mmod"; version="1.3.3"; sha256="1dz6887mlqbagjj98wcabmxj9hvsz8pgsizy1fqkwjhhs44c62y4"; depends=[adegenet pegas]; }; - mmodely = derive2 { name="mmodely"; version="0.2.2"; sha256="1xbnivb5xvivz8by5hrr3g8g5w7yyw5n65jl1qhxf2lzvdr3prcw"; depends=[ape caper caroline]; }; + mmodely = derive2 { name="mmodely"; version="0.2.5"; sha256="0fw2ncva8y5jxybi51bbqygkag5zaswni8bfg4gf78yjvjw3iyj5"; depends=[ape caper caroline]; }; mmpca = derive2 { name="mmpca"; version="2.0.3"; sha256="1kzjwl0sn8cdgw3jw95lg90vgh47iw293ffn7c0fb9kgxisd6dma"; depends=[digest Rcpp RcppEigen RcppGSL]; }; mmpf = derive2 { name="mmpf"; version="0.0.5"; sha256="1w1ll1l7yzwb1wmlrcfpgqyzni7yb20kxy422y867hx2ndxlfwpz"; depends=[checkmate data_table]; }; mmpp = derive2 { name="mmpp"; version="0.6"; sha256="16aypjf4i0ya3qgxqrrg8y0xbnq1pnqky1dpkgln5q494hphyg91"; depends=[]; }; mmr = derive2 { name="mmr"; version="0.1.0"; sha256="0by2v47b4kpjhfxzzl6kc1shw7g46nwnww4rq333r2cywvrbkk4w"; depends=[]; }; mmrm = derive2 { name="mmrm"; version="0.2.2"; sha256="1kfrzgl942fcfc0yhjjca2pqc28w37fy1313brfwcg1b9qi60grl"; depends=[checkmate lifecycle nlme numDeriv Rcpp RcppEigen Rdpack stringr testthat TMB]; }; mmsample = derive2 { name="mmsample"; version="0.1"; sha256="0mdd2zryadd31a5pls5fvlxx52mr54jsi1i6mwrs4y7rl3i9v95z"; depends=[MASS Rcpp RcppArmadillo]; }; - mmstat4 = derive2 { name="mmstat4"; version="0.1.3"; sha256="00d52l2r6waij7km4pfhv1k68xysyxxrgb7sarqixkvz24d5rcgj"; depends=[digest rappdirs rio rstudioapi shiny]; }; + mmstat4 = derive2 { name="mmstat4"; version="0.1.5"; sha256="0frs18r0ycp8z1cszpim9bvbmz0gsgjw8ypfbbfcx0j3w8hp9rcg"; depends=[digest rappdirs rio rstudioapi shiny]; }; mmtsne = derive2 { name="mmtsne"; version="0.1.0"; sha256="1by0hrggla6idc1isnq072i1wfpw4x7id3hkg8l65gy8iycccd12"; depends=[]; }; mnda = derive2 { name="mnda"; version="1.0.9"; sha256="1lmkxdfym1jfq05vpjky1b6nz1xwzsdh9mz3017v23qyg7dmbzyi"; depends=[aggregation assertthat ggplot2 ggraph igraph keras magrittr MASS Matrix reticulate tensorflow usethis]; }; + mnet = derive2 { name="mnet"; version="0.1.1"; sha256="0k42gya9hklpwh5h269ib6d6kw76jx65bckbm4j55l22m2i0giyz"; depends=[doParallel foreach mlVAR]; }; mnis = derive2 { name="mnis"; version="0.3.1"; sha256="03ss2sp4gjjxlfip95p2vcc0nz8q7khm3iiyh1362n2xb6yp78k0"; depends=[dplyr httr janitor jsonlite purrr Rcpp stringi tibble]; }; mniw = derive2 { name="mniw"; version="1.0.1"; sha256="0cb2jr0kq82pw0ai74w9a3lfhiqx4snwha5ygmc6z664i9q2wr1w"; depends=[Rcpp RcppEigen]; }; mnj = derive2 { name="mnj"; version="1.0"; sha256="05rz6krcq56zqvvaz3myf1aki2z635g2zrqyl25n2da1cvyjwdzq"; depends=[rpart]; }; mnlfa = derive2 { name="mnlfa"; version="0.2-4"; sha256="0m3phcskg8pwxg1p8ph2g43rbd6p3v8rysys60q5kv4457hgwqpx"; depends=[CDM Rcpp RcppArmadillo]; }; + mnmer = derive2 { name="mnmer"; version="0.99.1"; sha256="0smy7n016nax4wng8pikmgwmbkrhykc2hzvh60hwfbqlbfda66yj"; depends=[Biostrings cpp11]; }; mnonr = derive2 { name="mnonr"; version="1.0.0"; sha256="143qkn3bx37a6r7kgmspqh55l2r8k9f93jgxr6qpg51w411k5ilb"; depends=[]; }; - mnorm = derive2 { name="mnorm"; version="1.1.0"; sha256="0pw9hkqmblwvkhkkkzyzd8filr9dzrsl378c2zdvsdllawwnrx3s"; depends=[hpa Rcpp RcppArmadillo]; }; + mnorm = derive2 { name="mnorm"; version="1.1.1"; sha256="02ldzbcgxrv9q3fa3z49fx79wna84h66s4na22z3cv81ml1z4pvh"; depends=[hpa Rcpp RcppArmadillo]; }; mnormt = derive2 { name="mnormt"; version="2.1.1"; sha256="020ka48jsxm9l109ksvy2l17xcpm51avm0l971dgs2mgg01sgz4m"; depends=[]; }; mnreadR = derive2 { name="mnreadR"; version="2.1.6"; sha256="0h0l05l8cgrdrk8sk60p2284kp2xz35cygzyhlk0h2x29zhw7bb7"; depends=[dplyr ggplot2 nlme tibble tidyr]; }; mnt = derive2 { name="mnt"; version="1.3"; sha256="1wf2mq4zdhznv589j7snw0gpnfrlvq6lhfihi2n20qlwm3lb9naa"; depends=[MASS pracma]; }; @@ -12940,7 +13122,8 @@ in with self; { mod = derive2 { name="mod"; version="0.1.3"; sha256="0z5a6ps2m0cbw0n9kn44767m5jnbf1dl077i2p40fipv8xali9fb"; depends=[]; }; mod09nrt = derive2 { name="mod09nrt"; version="0.14"; sha256="1wn1y33bj9r712l0f063j5gcl423anjzmvgfy0ddihcrbpz4l7a0"; depends=[]; }; mod2rm = derive2 { name="mod2rm"; version="0.2.1"; sha256="1adx8ndz299hzlljahvbv1px60dfchwh2ic6njr12k3zcm52rsby"; depends=[ggplot2 scales]; }; - modEvA = derive2 { name="modEvA"; version="3.9"; sha256="14f58h9zkj211i9kfdgp5zr8g6bflc3d138chyab2n8v2z4wal00"; depends=[terra]; }; + modACDC = derive2 { name="modACDC"; version="1.0.0"; sha256="0l7gs96wkm09yflqnzas2axdc7ca29x6g7azxsaxfi3max2ns797"; depends=[CCA CCP data_table doParallel foreach ggplot2 partition tidyr]; }; + modEvA = derive2 { name="modEvA"; version="3.9.3"; sha256="0ycq9gqj9v6j4v1b0ivhdmzpkyhjxy2bszdgk2ad9rp2030m5rnd"; depends=[terra]; }; modMax = derive2 { name="modMax"; version="1.1"; sha256="1mx4623az7vzaqf530pklx7j92qwwq93pa2416lnr24jjcxgva2h"; depends=[gtools igraph]; }; modQR = derive2 { name="modQR"; version="0.1.3"; sha256="15ks5i7s19r4s9faxn36qlcf4y150b6xji970kxgilcgxvfqkgd8"; depends=[geometry lpSolve]; }; modTurPoint = derive2 { name="modTurPoint"; version="0.1.0"; sha256="1m24vsi80ln1r7sr40pipaaanyc60yfxmjzf8l7nfy3yvyr8zqpn"; depends=[]; }; @@ -12957,16 +13140,18 @@ in with self; { modeldata = derive2 { name="modeldata"; version="1.1.0"; sha256="0wsqn8vchvanfbfh1l1q54wzgnqx703r32a7xm4zqvq2jixc2nww"; depends=[dplyr MASS purrr rlang tibble]; }; modeldb = derive2 { name="modeldb"; version="0.2.3"; sha256="1drmcs46l77ihi4j4qr7j09bnf9n1488zy5954gqahq7ab80ag3g"; depends=[dplyr ggplot2 progress purrr rlang tibble tidypredict]; }; modelenv = derive2 { name="modelenv"; version="0.1.1"; sha256="1pnc3bs2fzanqzjv2y8a7yy6s8hmwwsccjc8pvifff5kp557a6di"; depends=[glue rlang tibble vctrs]; }; - modelgrid = derive2 { name="modelgrid"; version="1.1.1.0"; sha256="1z6g0akczry7vldkk6anfq572zbsfzbd6qnyllgjpbxhy3rrrq0r"; depends=[caret dplyr ggplot2 lattice magrittr purrr]; }; + modelfree = derive2 { name="modelfree"; version="1.2"; sha256="08kqc5a5ray0wgnd8c6d1frqzg9q990j1p78j7j7c5xll402c8ns"; depends=[PolynomF SparseM]; }; modelimpact = derive2 { name="modelimpact"; version="1.0.0"; sha256="16sy7r6bw5nzx77rd27ihgvp7bs39xchgid94ssklj6syc3kn2vq"; depends=[dplyr magrittr]; }; modelplotr = derive2 { name="modelplotr"; version="1.1.0"; sha256="0i1ssfcyl97zaxc9khdngrmsq9ydrmgv2nd7c6kc6i9z93jbkk4k"; depends=[dplyr ggfittext ggplot2 gridExtra magrittr RColorBrewer rlang scales]; }; modelr = derive2 { name="modelr"; version="0.1.11"; sha256="1lvv6gac3g4x1d58chbvlxlkd77qz21a3rlb64jvzwycx43dbswl"; depends=[broom magrittr purrr rlang tibble tidyr tidyselect vctrs]; }; - modelsummary = derive2 { name="modelsummary"; version="1.3.0"; sha256="1fgb2swyxnxx9g1p6c01krdsj8qcamcsg34rmrrcqn4544lrhq92"; depends=[broom checkmate data_table generics glue insight kableExtra parameters performance tables]; }; + modelsummary = derive2 { name="modelsummary"; version="1.4.1"; sha256="0iaamyl5gvw4dp5by1jg59xnm5mpyx5dql2ik0bwybsj1d2bf7bc"; depends=[checkmate data_table generics glue insight parameters performance tables]; }; modeltests = derive2 { name="modeltests"; version="0.1.4"; sha256="0ii5sh8yz5yvf0gq41ia55dvbg8x9042x82j52ck6haxa0w8zpfy"; depends=[dplyr generics purrr testthat tibble]; }; modeltime = derive2 { name="modeltime"; version="1.2.6"; sha256="0y7xwscqg5820g4gr09603ng4125mgk70giqs7nzi6fj99d7srb7"; depends=[cli dials doParallel dplyr forcats foreach forecast ggplot2 glue gt hardhat janitor magrittr parallelly parsnip plotly prophet purrr reactable rlang scales StanHeaders stringr tibble tidymodels tidyr tidyverse timetk workflows xgboost yardstick]; }; + modeltime_ensemble = derive2 { name="modeltime.ensemble"; version="1.0.3"; sha256="17mnz2x7i540gzwpqca106saafvsns9ar1q09pnnzkx2m4xv322i"; depends=[cli doParallel dplyr foreach generics glue magrittr modeltime modeltime_resample parsnip purrr recipes rlang rsample stringr tibble tictoc tidyr timetk tune workflows yardstick]; }; + modeltime_resample = derive2 { name="modeltime.resample"; version="0.2.3"; sha256="0prc4q5s6iwhknxlbaq43cyhmzwnmi52akpaf1zizw4c6flgny3v"; depends=[cli crayon dials dplyr forcats ggplot2 glue hardhat magrittr modeltime parsnip plotly progressr purrr recipes rlang rsample stringr tibble tictoc tidyr timetk tune workflows yardstick]; }; modeltools = derive2 { name="modeltools"; version="0.2-23"; sha256="1vqh69256h344sbj5affm0kmc77dakrxp6442xfdnfd0y5d8sgkb"; depends=[]; }; modelwordcloud = derive2 { name="modelwordcloud"; version="0.1"; sha256="0ardib0h923i7jk8bgcq6pn2zazx9acf9sdggifsk46hdz8hvqnm"; depends=[]; }; - moderate_mediation = derive2 { name="moderate.mediation"; version="0.0.2"; sha256="178xkw125qjvzp5zb37hd75js4spf129jfms6cdqcm7r25p77zdy"; depends=[cowplot distr doSNOW foreach ggplot2 mvtnorm reshape2 scales]; }; + moder = derive2 { name="moder"; version="0.2.1"; sha256="19lz6jl9lhzwafmxx8yp7sx5lkz2xixk2yl5ys5l82am402d1wwb"; depends=[]; }; modernVA = derive2 { name="modernVA"; version="0.1.2"; sha256="0kbk1jm39s6q2dyk5s3kn9mcjssqpkm5czr7vc2va92sg19174r9"; depends=[]; }; moderndive = derive2 { name="moderndive"; version="0.5.5"; sha256="0bgq6wsyyi6nsxqqh2k3zsmk64pfvb57z8pzk8ych3xih491hzlm"; depends=[broom dplyr formula_tools ggplot2 glue infer janitor knitr magrittr rlang stringr tibble]; }; modest = derive2 { name="modest"; version="0.3-1"; sha256="07rs014hdcabp2n0gg14pz2gmqgbw38vjv7a80vkzzh3601hxqws"; depends=[knitr rhandsontable shiny shinyBS]; }; @@ -12986,7 +13171,6 @@ in with self; { mokken = derive2 { name="mokken"; version="3.0.6"; sha256="127wjfvwc1dbb4bpaxa3arqsc87nrhzwsr0ldrc57s4hf3ibmcbg"; depends=[poLCA Rcpp]; }; moko = derive2 { name="moko"; version="1.0.3"; sha256="1igrz0k9gfs4lmwh20bvmx8176d22g8gha7iv36mrpqgcynfdzh0"; depends=[DiceKriging emoa GenSA GPareto mco]; }; molaR = derive2 { name="molaR"; version="5.3"; sha256="01l68a4jsp0dlylnp9ij1db0q4510l38jlql787bi6ah07xwf8zq"; depends=[alphahull pracma rgl Rvcg]; }; - molic = derive2 { name="molic"; version="2.0.3"; sha256="1qgb63wl5726mypv0f07wcf3aznl93vh045ghx66hiqj3kzfir2b"; depends=[doParallel ess foreach ggplot2 ggridges Rcpp]; }; molnet = derive2 { name="molnet"; version="0.1.0"; sha256="1ha1jyh3mmbv2zgr2zrrjmslwd1gyy04hvqjk4d3ap2kna35wlgk"; depends=[dplyr igraph magrittr readr Rfast rlang stringr tibble tidyr WGCNA]; }; mombf = derive2 { name="mombf"; version="3.3.1"; sha256="0ix1j8zj1qs3w77nfxrr9ch7a1glygb0wfj6wwchj7ba9psp31l2"; depends=[dplyr glmnet mclust mgcv mvtnorm ncvreg pracma Rcpp RcppArmadillo sgd survival]; }; momentchi2 = derive2 { name="momentchi2"; version="0.1.5"; sha256="1fv0jmwws4mkl9dsaybfpj29ncvqx2idsijgwz2qjblcg309a6k9"; depends=[]; }; @@ -13007,7 +13191,7 @@ in with self; { monochromeR = derive2 { name="monochromeR"; version="0.1.4"; sha256="02szpvr828d338h437siqyl9p1ncp9x3xahskrqpvibn0rwd90av"; depends=[ggplot2 magrittr]; }; monographaR = derive2 { name="monographaR"; version="1.2.1"; sha256="09fkcw13h7dx7j5vyp48fk6yzv9n64568zf2zvmm2c008jw3gkbm"; depends=[circular maptools png raster rmarkdown sp]; }; monomvn = derive2 { name="monomvn"; version="1.9-17"; sha256="0hzwcmdg0j2jrp5a19mixih4ng4xa8p315g77adardp6k6z2wcjk"; depends=[lars MASS mvtnorm pls quadprog]; }; - monoreg = derive2 { name="monoreg"; version="2.0"; sha256="059y5rj74b2rgkqmqqa4v74ih6knydj3kb2hr7hz4xj36cg01x54"; depends=[]; }; + monoreg = derive2 { name="monoreg"; version="2.1"; sha256="1ra6mnn9m3989h6pcrpfhv5bl4q5i6856w4wp6lmaxipr6swlnk2"; depends=[]; }; monotone = derive2 { name="monotone"; version="0.1.2"; sha256="0izj9p51f5g291n7zvgh9ncjjm88aacz6imy08kpwb0d9bgxl1mf"; depends=[]; }; monotonicity = derive2 { name="monotonicity"; version="1.3.1"; sha256="0bb6sl8yykry25a86qfggi36ggr1xrxcqsnzp6rb6na228hbwa2z"; depends=[lmtest MASS sandwich]; }; monreg = derive2 { name="monreg"; version="0.1.4"; sha256="15qgfhbd8ny05rjd1nn33ynh4i7m7wcy8az53jraghlk760bymwg"; depends=[]; }; @@ -13042,10 +13226,10 @@ in with self; { mousetrap = derive2 { name="mousetrap"; version="3.2.1"; sha256="12vlb5fhq9m2f3c073xzdqk98gdq7jk2rwj6kcckxx6x7wg20fyd"; depends=[cstab diptest dplyr fastcluster fields ggplot2 lifecycle magrittr pracma psych RColorBrewer Rcpp rlang scales tidyr]; }; movMF = derive2 { name="movMF"; version="0.2-7"; sha256="1n2s03h9ksn0sv7k8w93ddy5q1m35nw4jywa98yk0yiq3s4dvsnx"; depends=[clue skmeans slam]; }; move = derive2 { name="move"; version="4.1.12"; sha256="145rlzgqhipxlphq07pa99igzlbpxf9r2f2yhc64p3gw17shv6ky"; depends=[geosphere httr memoise raster Rcpp rgdal sp xml2]; }; - moveHMM = derive2 { name="moveHMM"; version="1.8"; sha256="1rd7ajpysly8drddb02hi3ss2qd9sy90hrlppc0l5bwz2lvncf3c"; depends=[boot CircStats geosphere ggmap ggplot2 MASS numDeriv Rcpp RcppArmadillo sp]; }; + moveHMM = derive2 { name="moveHMM"; version="1.9"; sha256="0dq6p13rfv0dryl323zqc0ix12vzn0qaykb9qnxiipwvj0j3qmz2"; depends=[boot CircStats geosphere ggmap ggplot2 MASS numDeriv Rcpp RcppArmadillo sp]; }; moveVis = derive2 { name="moveVis"; version="0.10.5"; sha256="1lj22yr6v3vg795r72gkbhyabycppxbjsaldqiqgckhkdfh3lziw"; depends=[av cowplot curl ggplot2 gifski lubridate lwgeom magick magrittr move pbapply raster sf slippymath]; }; moveWindSpeed = derive2 { name="moveWindSpeed"; version="0.2.3"; sha256="14a2iymn4j831xlh42z5qxmhnh7xpp5bxasgpkhnb3v0b5ldyilh"; depends=[move Rcpp]; }; - movecost = derive2 { name="movecost"; version="1.9"; sha256="0pg92jczsqjbw8w9rlg19lffbvwl2yfpqp52srjgpcsjwbcva6lw"; depends=[chron elevatr gdistance leastcostpath raster sf sp terra]; }; + movecost = derive2 { name="movecost"; version="2.0"; sha256="0ii2n6xy646h45wf8cv83qbryjipz4mx2gkx57zx8b944as9hkd8"; depends=[chron elevatr gdistance Matrix raster sf sp terra]; }; mp = derive2 { name="mp"; version="0.4.1"; sha256="0awvwqwb25q47j14b450k1k5mh2yzwhn7gizjv5j7lyiamk30iwq"; depends=[Rcpp RcppArmadillo]; }; mpath = derive2 { name="mpath"; version="0.4-2.23"; sha256="16gd2z40551cn4fg0ljd09q64a4darsh72f8nw6dwvc2sxfj220n"; depends=[bst doParallel foreach glmnet MASS numDeriv pamr pscl WeightSVM]; }; mpathsenser = derive2 { name="mpathsenser"; version="1.1.3"; sha256="0hjq8ka85yxlzjlln7ravwcrrw85gw0a671v3rjzww9nx1h5gp8h"; depends=[DBI dbplyr dplyr furrr jsonlite lifecycle lubridate magrittr purrr rlang RSQLite tibble tidyr]; }; @@ -13053,13 +13237,14 @@ in with self; { mpm = derive2 { name="mpm"; version="1.0-23"; sha256="1jpv2ddmw7aarqbbyfys1yb840arw33319wnny3v2hk84hldmayj"; depends=[KernSmooth MASS]; }; mpmcorrelogram = derive2 { name="mpmcorrelogram"; version="0.1-4"; sha256="0gv9xswrfvndcjal0csab1w2cnl4rg8pznyxbz84b0qr95jg81ag"; depends=[vegan]; }; mpmi = derive2 { name="mpmi"; version="0.43.2"; sha256="1adfsrnigd46k7xm2brhq7afrh1x1i7s4mzn8iq2dnqikb8pl7pl"; depends=[KernSmooth]; }; + mpmsim = derive2 { name="mpmsim"; version="1.0.0"; sha256="0mwrq794qcsrm0r2p8c2vahm1jlh9q35jjzf7r963xrd70kplmvp"; depends=[dplyr ggplot2 MCMCpack popbio popdemo reshape]; }; mpoly = derive2 { name="mpoly"; version="1.1.1"; sha256="10is69ks22ka1cqw3xk0fvy4z3b2drm8lanqwj178qrzj7ipf7i0"; depends=[ggplot2 orthopolynom partitions plyr polynom stringi stringr tidyr]; }; mpower = derive2 { name="mpower"; version="0.1.0"; sha256="0bg2q6dgnh17v5rwa50qj6yivn902p34nmpkbvqhn7qsf45vadmf"; depends=[abind boot doSNOW dplyr foreach ggplot2 magrittr MASS purrr reshape2 rlang sbgcop snow tibble tidyr tidyselect]; }; mppR = derive2 { name="mppR"; version="1.4.0"; sha256="1w2jldamfb2vl0v2f5wz7gj1zgr3a0cxrmj27x9rkhpqjfrik4ly"; depends=[dplyr ggplot2 igraph Matrix nlme qtl]; }; mpr = derive2 { name="mpr"; version="1.0.6"; sha256="155cjdcyvxnmqxx3zg2dvzk7av2jcn67lj2vdpd2ahbznax76ghk"; depends=[survival]; }; mpspline2 = derive2 { name="mpspline2"; version="0.1.6"; sha256="1zh53lxsy895lljxlyhas5xb9ln5q772h26yil7ydq6zlh4w8vr0"; depends=[]; }; mpt = derive2 { name="mpt"; version="0.8-0"; sha256="02m92dn9y5q4ql7ydn01nn5irm82kknd2dqc0bcnxsn7kdbglnid"; depends=[]; }; - mpwR = derive2 { name="mpwR"; version="0.1.3"; sha256="0wfqs74ih5v31biclnxsifk8pyxsa9q9ysca45ch4rzxmc2ry9m3"; depends=[comprehenr data_table dplyr flowTraceR forcats ggplot2 magrittr plotly purrr stringr tibble tidyr UpSetR]; }; + mpwR = derive2 { name="mpwR"; version="0.1.4"; sha256="0s18dg39ff4llppjkriyz23xni22p59v7lfxpq917zsijghk4iad"; depends=[comprehenr data_table dplyr flowTraceR forcats ggplot2 magrittr plotly purrr stringr tibble tidyr UpSetR]; }; mr_pivw = derive2 { name="mr.pivw"; version="0.1.1"; sha256="1y3kfbwvy5a01527d18ca4p10nm8x4rm8zgr7h71irbjl3jlj70v"; depends=[]; }; mr_raps = derive2 { name="mr.raps"; version="0.2"; sha256="069vyvsdgc5m7n2fd0h7jrllz789zvsxka7h5wiy36dc7lagd6f8"; depends=[nortest]; }; mrMLM = derive2 { name="mrMLM"; version="5.0.1"; sha256="0z2vwvpc7yrxza3jy3x3mj7d3n10bfbq72rcsnrjrz2jkcbkwb8g"; depends=[BEDMatrix coin data_table doParallel foreach lars ncvreg Rcpp RcppEigen sampling sbl]; }; @@ -13067,7 +13252,7 @@ in with self; { mra = derive2 { name="mra"; version="2.16.11"; sha256="0268msdy4cs2ifpagmwiabi6aav54ckn214ai18aqv2h97hmixw0"; depends=[]; }; mratios = derive2 { name="mratios"; version="1.4.2"; sha256="18pi0dks0qmw0gv76yqm4gvxdqrcvr25j1vb8k4mkp5p35kzkzff"; depends=[multcomp mvtnorm survival survPresmooth]; }; mrbayes = derive2 { name="mrbayes"; version="0.5.1"; sha256="11n3d18di01vmwqs5a0i1h8839aammzbcavi1jk58bmrwb3l771j"; depends=[BH plyr Rcpp RcppEigen rstan rstantools StanHeaders]; }; - mrbin = derive2 { name="mrbin"; version="1.7.3"; sha256="0ic60sg2kngnm1k5nfcdaf89ki68xbiggp6n8pas3gx8057wbzhl"; depends=[]; }; + mrbin = derive2 { name="mrbin"; version="1.7.4"; sha256="11k7k88ax9jpad32nbv52hkdrsh1px1aid3j54gbmvhf3kbqasmd"; depends=[]; }; mrbsizeR = derive2 { name="mrbsizeR"; version="1.2.1.1"; sha256="0v06sd5sh7ghlr8lgrv6l4glmv7chj3951pw4ssxrly4hz2rh6i0"; depends=[fields maps Rcpp]; }; mrds = derive2 { name="mrds"; version="2.2.8"; sha256="0pm3vn0cixkdafa789sfscf2zl3kxn192jp4h792n47k0w1add6x"; depends=[mgcv numDeriv optimx Rsolnp]; }; mreg = derive2 { name="mreg"; version="1.2.0"; sha256="1gz19d4l0q3xd1w72ip6mhv20w8fgaaczkkdv40bflwabpxdy420"; depends=[]; }; @@ -13144,10 +13329,10 @@ in with self; { mully = derive2 { name="mully"; version="2.1.38"; sha256="1lvyj1kyi9ad2byhc1amrjasc2brv7g4d2i08rf7149vp35cwrsg"; depends=[igraph randomcoloR rgl]; }; mulset = derive2 { name="mulset"; version="1.0.0"; sha256="0pigiy6hfiqh6x4zx6zqn3ykk36s3abzzyb67jdlf4jzc5zhrl9g"; depends=[digest gtools]; }; multDM = derive2 { name="multDM"; version="1.1.4"; sha256="132kqbrg1ism2byhal50j0hr0qqlnd30db9z6vvjc977d03hf41l"; depends=[MTS]; }; - multIntTestFunc = derive2 { name="multIntTestFunc"; version="0.1.1"; sha256="1psbjgg0dqd4nbmyja1mx4v1w0jqqhc67p7wqf1ipm93llv8sv6f"; depends=[gsl pracma]; }; + multIntTestFunc = derive2 { name="multIntTestFunc"; version="0.2.0"; sha256="0z2wsbhb8lbmb5favqaang3rq4fk6ln9d5spssinzlbpqb04y6nk"; depends=[mvtnorm pracma]; }; multbxxc = derive2 { name="multbxxc"; version="1.0.1"; sha256="1ip5awjc2ljpy6nsr4y42x0yg4n7lyaxp9kzfjvwp41k9lriz4gm"; depends=[Rcpp RcppArmadillo rmumps]; }; multcomp = derive2 { name="multcomp"; version="1.4-23"; sha256="1qfdm0h6sg51cvfy9hmif7aw1jvk6jq9fvniynpxpwnqifjm8la2"; depends=[codetools mvtnorm sandwich survival TH_data]; }; - multcompView = derive2 { name="multcompView"; version="0.1-8"; sha256="1rfq9wvvrghq0542ff40wy8vdmsyd8spzz6ihcywcvxdfa8m6g8j"; depends=[]; }; + multcompView = derive2 { name="multcompView"; version="0.1-9"; sha256="15vki166n2k4ng72hy62c2mzz18s10h6l6w839qplg0zsplr6f8z"; depends=[]; }; multfisher = derive2 { name="multfisher"; version="1.1"; sha256="0vzvq7v2xz35fx8pg25c9xqkic09k6fcg9zh81j7pgqmzi2wwrp8"; depends=[]; }; multgee = derive2 { name="multgee"; version="1.8.0"; sha256="1cp3762901af93m0i3m61ngnxbwjirjg46mkdcj0ycmk7phh7bcc"; depends=[gnm Rcpp RcppArmadillo VGAM]; }; multiActionButton = derive2 { name="multiActionButton"; version="1.0.0"; sha256="1yc111l0ah6ldh5fh1nd3fy9qxyzzszj02w26nqm49c3q0058f15"; depends=[htmltools shiny]; }; @@ -13163,24 +13348,25 @@ in with self; { multibiasmeta = derive2 { name="multibiasmeta"; version="0.1.0"; sha256="1f17qdfqq0l2rivd48hs9gsgca8swvza8q9m1hwxcmpswa4spjy5"; depends=[dplyr EValue metabias metafor purrr Rdpack rlang robumeta]; }; multibiplotGUI = derive2 { name="multibiplotGUI"; version="1.1"; sha256="08vmdhrn6qqq57q818cqnmsw7qaa4gnw3m5myzp4dc85njgzzi02"; depends=[cluster dendroextras MASS Matrix plotrix rgl shapes tcltk2 tkrplot]; }; multiblock = derive2 { name="multiblock"; version="0.8.5"; sha256="0kzcya3iqjp55rcml1iipsrb5pf11m3xv3zwx6rlvlq2vpv6f8q7"; depends=[ade4 car FactoMineR geigen lme4 MASS mixlm plotrix pls plsVarSel pracma progress r_jive Rcpp RcppEigen RegularizedSCA RGCCA RSpectra SSBtools]; }; + multibreakeR = derive2 { name="multibreakeR"; version="0.1.0"; sha256="1rg5k2ldaf5ygnrjpfk28gqqs7d8cfjq9cm5zli47yavqm43mq78"; depends=[dplyr ggplot2 reshape2 rlang scales]; }; multibridge = derive2 { name="multibridge"; version="1.2.0"; sha256="0akl9i3fhgd0pqsvgp7cv2l2l84cqc3cc4lambnjmwdyh7x4qcvd"; depends=[Brobdingnag coda magrittr mvtnorm progress purrr Rcpp Rdpack stringr]; }; multicastR = derive2 { name="multicastR"; version="2.0.0"; sha256="0zxv3kxk8gh2fgllzzg7k625n3p4q5pr465ja0mhvs48m4n262l9"; depends=[]; }; multichull = derive2 { name="multichull"; version="1.0.0"; sha256="1gc7kxxlbanc6rmmbf6h85jf7kj0a78h23m5vwwqqliv018qsv2n"; depends=[igraph plotly shiny shinythemes]; }; multiclassPairs = derive2 { name="multiclassPairs"; version="0.4.3"; sha256="0mz15dl3fiznbnfjjmnhr9z6qh43mwafnkisd7svc3cb0lrbbjci"; depends=[Boruta caret dunn_test e1071 ranger rdist]; }; multicmp = derive2 { name="multicmp"; version="1.1"; sha256="0mz7ksc5h6dy95l3kbsamm191372blhlrj573krc57bj93lmp1a5"; depends=[numDeriv]; }; multicool = derive2 { name="multicool"; version="0.1-12"; sha256="0djacq0irfqz4nlnx238kja73yvr1n5qybbfyl6bw1n6qgcjhza8"; depends=[Rcpp]; }; - multid = derive2 { name="multid"; version="0.7.1"; sha256="0gvh7lfz47zy050wfjxdvy3s2q4gcvmbp5vb13xxgz0xl7iq8qlf"; depends=[dplyr emmeans glmnet lavaan lme4 pROC quantreg]; }; + multid = derive2 { name="multid"; version="0.8.0"; sha256="0kwbgnazg89542rjf764mn2bc50fnvcsx00pvighmdsanq5r4w5i"; depends=[dplyr emmeans glmnet lavaan lme4 pROC quantreg]; }; multidplyr = derive2 { name="multidplyr"; version="0.1.3"; sha256="18yl24s1g8wf3xi6f0k7jhs99ka4dslxf5p9ax9m5l1rbva5xdwj"; depends=[callr cli crayon dplyr magrittr qs R6 rlang tibble tidyselect vctrs]; }; multifamm = derive2 { name="multifamm"; version="0.1.1"; sha256="09s6hnyi5x48yp97499zai7b959ylkk17zbbc6d8a71ynvfas8ir"; depends=[data_table funData MFPCA mgcv sparseFLMM zoo]; }; multifear = derive2 { name="multifear"; version="0.1.2"; sha256="15nxyb17qzwld3ngw5k60nsr5nnam09jc1ky87rvsvslj6f3v696"; depends=[BayesFactor bayestestR bootstrap broom dplyr effectsize effsize esc ez forestplot ggplot2 nlme purrr reshape2 stringr tibble]; }; multifunc = derive2 { name="multifunc"; version="0.9.4"; sha256="0gxgxfh8vmczc7dc4awfmmmwds98kk9d5c9rk1lz1himp19mqsj4"; depends=[broom dplyr magrittr MASS purrr]; }; multifwf = derive2 { name="multifwf"; version="0.2.2"; sha256="1l6z3pzz6g6w1spp1f918jh6w0jm93qyc882rj8jhn1198d2s8nd"; depends=[]; }; - multigraph = derive2 { name="multigraph"; version="0.97-2"; sha256="0rc2imyarb9k3cxpf27gsmhpn9v3cxn35f5vlpa77irhryyzxy1s"; depends=[multiplex]; }; + multigraph = derive2 { name="multigraph"; version="0.98"; sha256="07mzgbpbskrqdp1shsxgsdki2r6gy08723c3qwdcc8z6r5ffd2r8"; depends=[multiplex]; }; multigraphr = derive2 { name="multigraphr"; version="0.1.0"; sha256="018kwpphwkpm07by7pvrwp5wvrasnpaxbs67pdrbfxzc139d15q9"; depends=[]; }; multigroup = derive2 { name="multigroup"; version="0.4.5"; sha256="1d3m2c3md9iiv1gfqfyik1xj3fsas85bmf2vbkaks8ljxa42f55k"; depends=[MASS]; }; multilateral = derive2 { name="multilateral"; version="1.0.0"; sha256="13zp2357vqaj09m6af8gzjgf74983icikbnn11z18r8c3wb5kngy"; depends=[assertive data_table fastmatch MatrixModels yaml]; }; multilaterals = derive2 { name="multilaterals"; version="1.0"; sha256="11zfdhn6qzqz0n31g23bn40wnfzkjndb753iiqvihirphzb74v5v"; depends=[ape igraph]; }; - multilevLCA = derive2 { name="multilevLCA"; version="1.1"; sha256="08yfiq0pg4a8fcrv5xravsv5nf4m7lr7iq2nk1w2wrnzijdavwgv"; depends=[dplyr foreach klaR magrittr MASS Rcpp RcppArmadillo tidyr]; }; + multilevLCA = derive2 { name="multilevLCA"; version="1.2"; sha256="1rb2prdgxyh4zxxffpgl96n508425r74hjl603pzqigwdyk2i40m"; depends=[dplyr foreach klaR magrittr MASS Rcpp RcppArmadillo tidyr]; }; multilevel = derive2 { name="multilevel"; version="2.7"; sha256="0ds7q3q2ncldb4iik24xisyxyyv1yv8l1yz7zd7cy036bna1yp5i"; depends=[MASS nlme]; }; multilevelPSA = derive2 { name="multilevelPSA"; version="1.2.5"; sha256="0926jaicdxk846vyfphb2hyg3zan3wal44x1bwamws0zf4flc4hj"; depends=[ggplot2 MASS party plyr PSAgraphics psych reshape xtable]; }; multilevelTools = derive2 { name="multilevelTools"; version="0.1.1"; sha256="01fzx7j0mkb4fr7axv34184w6w5nfsdcr51nscci1mi5b2805x1s"; depends=[cowplot data_table extraoperators ggplot2 JWileymisc lavaan lme4 lmerTest nlme zoo]; }; @@ -13194,10 +13380,10 @@ in with self; { multiness = derive2 { name="multiness"; version="1.0.2"; sha256="08bgjs2mrmsdvha10dr74262yk5ghyflvs8pqbl7bc8aws7lv8f5"; depends=[glmnet Matrix RSpectra]; }; multinet = derive2 { name="multinet"; version="4.1.2"; sha256="0i87r6k6pzr7gbspcq9d101gwnnlwqpr0y4s1dgqsa2abivk0p55"; depends=[igraph RColorBrewer Rcpp]; }; multinets = derive2 { name="multinets"; version="0.2.2"; sha256="1i5jsq1xy0g0l5d1z3hz4gj6inj4rhd6lf2s5xzd5k8ccp5aba8c"; depends=[igraph Rcpp]; }; - multinma = derive2 { name="multinma"; version="0.5.0"; sha256="0s7wybp56f102khxjvlmd55rm1yc728cgp948376vkj0lz4hnsvr"; depends=[bayesplot BH copula dplyr forcats ggdist ggplot2 ggraph glue igraph Matrix purrr randtoolbox Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools StanHeaders stringr tibble tidyr truncdist]; }; + multinma = derive2 { name="multinma"; version="0.5.1"; sha256="083xwcvciap9la97zk9af2phsvakmh4lamn43a9dsvj93w2sv2rv"; depends=[bayesplot BH copula dplyr forcats ggdist ggplot2 ggraph glue igraph Matrix purrr randtoolbox Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools StanHeaders stringr tibble tidyr truncdist]; }; multinomialLogitMix = derive2 { name="multinomialLogitMix"; version="1.0"; sha256="0ckw4gn428awka282cx8ddk9p62yp5za0d8hj1qjnkkdphaqzfil"; depends=[coda doParallel foreach ggplot2 label_switching MASS matrixStats mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; multinomineq = derive2 { name="multinomineq"; version="0.2.5"; sha256="1lm5b3c8z6dqyipr9rwqsh0far4a9v9dfxdvrjlg0iyf723rr39k"; depends=[coda quadprog Rcpp RcppArmadillo RcppProgress RcppXPtrUtils Rglpk]; }; - multiocc = derive2 { name="multiocc"; version="0.1.0"; sha256="1043cckddrr1sgnxd3fmj9kcgglmgw52lckxbzc91g6s7p9h7wgx"; depends=[fields interp MASS MCMCpack tmvtnorm truncnorm]; }; + multiocc = derive2 { name="multiocc"; version="0.2.0"; sha256="1a3k5mqhx4d9p8cs76cngjmqilgh5jdmdf4k5hjx11pbrf6gknkl"; depends=[coda interp MASS tmvtnorm truncnorm]; }; multipanelfigure = derive2 { name="multipanelfigure"; version="2.1.2"; sha256="0cm5bd7k0fx6d3gybcll6vvh14byanyk6dj4civqij7psa48iagc"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types ggplot2 gridGraphics gtable magick magrittr stringi]; }; multipleNCC = derive2 { name="multipleNCC"; version="1.2-2"; sha256="0bnc14l5b3x68qnwf3ma8wrclmp6n7fxsc0sbd7cfaayhp8dzcb1"; depends=[mgcv survival]; }; multiplestressR = derive2 { name="multiplestressR"; version="0.1.1"; sha256="167ch16bdlk4syjbgn1149q1np90w6299ph35p9npdh1zcynm95f"; depends=[ggplot2 patchwork viridis]; }; @@ -13207,7 +13393,7 @@ in with self; { multiridge = derive2 { name="multiridge"; version="1.11"; sha256="0nxs00bglkr234nxsxn0djvi8cxavzc2nl2nl3zmnqa9aw2aikza"; depends=[mgcv pROC snowfall survival]; }; multiselect = derive2 { name="multiselect"; version="0.1.0"; sha256="1cda38zq7c1r56wdfpr5dg0jfw4kzi9p7jq59qm04j461j9ag3q6"; depends=[Hmisc]; }; multisensi = derive2 { name="multisensi"; version="2.1-1"; sha256="0f8i1jvrnmdsws5w7fz9k5pb5yfl5b9hnfd8aq4zj1r6m90kb6sz"; depends=[knitr sensitivity]; }; - multisite_accuracy = derive2 { name="multisite.accuracy"; version="1.1"; sha256="0fx28nhmbs7nna328sf3l4sx6nrv243b60sr406ga0137c9d5nag"; depends=[AROC coxme lme4 lmerTest logistf metafor pROC survival]; }; + multisite_accuracy = derive2 { name="multisite.accuracy"; version="1.2"; sha256="1hj1gjc8833np9cahpw1f1p2yg95xx32rbzj6l9sc65dv5ncq5jf"; depends=[AROC coxme lme4 lmerTest logistf metafor pROC survival]; }; multisom = derive2 { name="multisom"; version="1.3"; sha256="0msxmrj4iawxg4vf4r7kj26zalxz4di2w4nxgxiakiig4g4ggy9z"; depends=[class kohonen]; }; multispatialCCM = derive2 { name="multispatialCCM"; version="1.2"; sha256="168shygdy2x7ww365hdb0f5pkq0b5w3gwcwpgnlzncj4jxd6pf4c"; depends=[]; }; multitaper = derive2 { name="multitaper"; version="1.0-15"; sha256="1gm3wr8xqpqiby7q1dr3zxim77v0bvvrqi0hlazf5g3gnkrp2zc3"; depends=[]; }; @@ -13220,7 +13406,6 @@ in with self; { multiway = derive2 { name="multiway"; version="1.0-6"; sha256="1y9cykarr2aysdrnyab5aklsrc5id5b58881q03lcb5kc385v3gv"; depends=[CMLS]; }; multiwayvcov = derive2 { name="multiwayvcov"; version="1.2.3"; sha256="1znsmca16jac8s5z0j64cck27pvf88anm1mfblabqchqqcz1ykfc"; depends=[boot sandwich]; }; multxpert = derive2 { name="multxpert"; version="0.1.1"; sha256="1lq5lgdjaaacipkjqxz6jxsm6b8zfbjsf7rs135a7n6w7qh35pvw"; depends=[mvtnorm]; }; - mumm = derive2 { name="mumm"; version="0.2.1"; sha256="1wjg2pqn2wb9hk9mqgpi3k26qwjnkmp4apx09lxcwrz35bbwhfzv"; depends=[lme4 Matrix Rcpp RcppEigen stringr TMB]; }; munfold = derive2 { name="munfold"; version="0.3.5"; sha256="17zizx9r0f8dxb7dkgn1nn0fp7ydy6r155p1zfz0v93jc26lc1hb"; depends=[MASS memisc]; }; munsell = derive2 { name="munsell"; version="0.5.0"; sha256="16g1fzisbpqb15yh3pqf3iia4csppva5dnv1z88x9dg263xskwyh"; depends=[colorspace]; }; munsellinterpol = derive2 { name="munsellinterpol"; version="3.0-0"; sha256="15314dr42sikw8i1qdi5rw8r52whgxsda6m2jbldxdc67vlwmcwd"; depends=[rootSolve spacesRGB spacesXYZ]; }; @@ -13239,7 +13424,6 @@ in with self; { mvMAPIT = derive2 { name="mvMAPIT"; version="2.0.1"; sha256="0whjgyf8asvbbd0ic0x4yqisasmxywl91klxpnbg3kd5i8p831rw"; depends=[checkmate CompQuadForm dplyr foreach harmonicmeanp logging mvtnorm Rcpp RcppArmadillo RcppParallel RcppSpdlog testthat tidyr]; }; mvMISE = derive2 { name="mvMISE"; version="1.0"; sha256="0lnc5g3ksl5cvwylh8p8baxyvq3z32a2i337q7lhg00j031ccy5c"; depends=[lme4 MASS]; }; mvMORPH = derive2 { name="mvMORPH"; version="1.1.7"; sha256="0bjy8pyy47lqbixjs4qrk4mgvznnviahlkmyf3k07x381z6bl8qx"; depends=[ape corpcor glassoFast pbmcapply phytools spam subplex]; }; - mvMonitoring = derive2 { name="mvMonitoring"; version="0.2.0"; sha256="0nfkcbi29fprz3mb7rrnn2rvixi4wmfmdsfsw219hj21vafk1bqz"; depends=[dplyr lazyeval plyr rlang robustbase xts zoo]; }; mvPot = derive2 { name="mvPot"; version="0.1.5"; sha256="18kzlz42ridmwjrai6f598vvhmvk7gwyp869qjqclbf9jpc1xlcx"; depends=[evd gmp MASS numbers]; }; mvProbit = derive2 { name="mvProbit"; version="0.1-10"; sha256="1iy249mc5fi72l0lcvjrn40fn6q1m8hj8njcl0li2z6lzydifkd4"; depends=[abind bayesm maxLik miscTools mvtnorm]; }; mvQuad = derive2 { name="mvQuad"; version="1.0-6"; sha256="016477dhjdkqiadc631vzpbp967mn4yli6by3s1k348mlfirwsi3"; depends=[data_table statmod]; }; @@ -13274,19 +13458,20 @@ in with self; { mvtsplot = derive2 { name="mvtsplot"; version="1.0-4"; sha256="1391m4r58hbaqbq46isi15jx6vhx7frdspbs1ippbpw7rsanch9w"; depends=[RColorBrewer]; }; mwTensor = derive2 { name="mwTensor"; version="1.0.1"; sha256="1706lia8vhj470hsvncvzw97228g2971rrm3w59qihxbajfqb52v"; depends=[ccTensor igraph iTensor MASS nnTensor rTensor]; }; mwa = derive2 { name="mwa"; version="0.4.4"; sha256="0f994xpylqhhwwr3rv0y5y68989ssy7q4pb3hawq0ww0l3wj9lmd"; depends=[cem MASS rJava]; }; - mwcsr = derive2 { name="mwcsr"; version="0.1.6"; sha256="0wrgmm1candyws9qcf6jqbqp1n0x5wzgi9i4gw8j7kh1apilqmmv"; depends=[igraph Rcpp]; }; + mwcsr = derive2 { name="mwcsr"; version="0.1.7"; sha256="18idrn160m4yf24cbdgvjjawcw1hjxnsnc04jqqp7phlbfzcwi13"; depends=[igraph Rcpp]; }; mwshiny = derive2 { name="mwshiny"; version="2.1.0"; sha256="0c1a0d9qnaszffhzanmk31mdxqi7j3rn6bk7a3dwg4bq1da3rlgl"; depends=[htmltools shiny]; }; mxkssd = derive2 { name="mxkssd"; version="1.2"; sha256="19zz5y5gz84a7qicaj3v2j6l558vr6w8lcy67b3kmkq64mnnirda"; depends=[]; }; mxmmod = derive2 { name="mxmmod"; version="1.1.0"; sha256="0x4m6y4ngb3vm9xpvwvn1zcbch2fhz8pb267hg2sb3kk5m504xxq"; depends=[OpenMx]; }; - mxnorm = derive2 { name="mxnorm"; version="1.0.2"; sha256="1bzip0rcw0vsz151ql8pcc59v100797ps6m60qiz95aldwcdmdrj"; depends=[caret data_table dplyr e1071 fda fossil ggplot2 glue KernSmooth kSamples lme4 magrittr psych reticulate rlang stringr tidyr uwot]; }; + mxnorm = derive2 { name="mxnorm"; version="1.0.3"; sha256="01845m5h4rd38n0fll2k2d9hw6j9dbjgs7kmwy30g9lkffvv73s8"; depends=[caret data_table dplyr e1071 fda fossil ggplot2 glue KernSmooth kSamples lme4 magrittr psych reticulate rlang stringr tidyr uwot]; }; + myCRAN = derive2 { name="myCRAN"; version="1.0"; sha256="0lx0l5z3z20xfil6f3c94by334girhca7ixyix88k5jn46a2s373"; depends=[cranlogs]; }; + myClim = derive2 { name="myClim"; version="1.0.1"; sha256="0qr312ixvhp7bspwh3i9sqabcdsgjqajr07r66bpq02xs9qpv1lc"; depends=[dplyr ggforce ggplot2 lubridate plotly purrr runner stringr tibble tidyr viridis zoo]; }; myTAI = derive2 { name="myTAI"; version="0.9.3"; sha256="0fd6srvwzqir8zif56cnyi02c952fgc67xzc17wn7xvmvljfvh4x"; depends=[cpp11 doParallel dplyr edgeR fitdistrplus foreach ggplot2 gridExtra nortest RColorBrewer Rcpp RcppArmadillo readr reshape2 scales taxize tibble]; }; mycobacrvR = derive2 { name="mycobacrvR"; version="1.1"; sha256="1hrn2v6wvw8xllqd1bhxb50hj9icinfrar6k9jgl0wjcsn024fc1"; depends=[]; }; mycor = derive2 { name="mycor"; version="0.1.1"; sha256="00hqmvga22bv43833s974s7ky7lbry3r2bb5kza7kvkn1p6773rg"; depends=[lattice]; }; - mzipmed = derive2 { name="mzipmed"; version="1.2.5"; sha256="1mwnkwpn8awwnjm6yyad7xasc0va7hc6ya37hzyx91j8802gqhvk"; depends=[MASS matrixStats robust]; }; + mzipmed = derive2 { name="mzipmed"; version="1.3.5"; sha256="1yqj94v12xqnycqiqxb3b6kpqrzx7jyiq30rnw3fw0ny4v8npb24"; depends=[MASS matrixStats robust]; }; n1qn1 = derive2 { name="n1qn1"; version="6.0.1-11"; sha256="17p48wm0wcw46lk9382yd9xpzx4rygdjyrbfdi6xnph1k5phjxpj"; depends=[Rcpp RcppArmadillo]; }; nCDunnett = derive2 { name="nCDunnett"; version="1.1.0"; sha256="0q2db1pixqr0wbx4bd05c98i1p0vgaqsfa1iwjxr08c62a5xhkks"; depends=[]; }; nCopula = derive2 { name="nCopula"; version="0.1.1"; sha256="03qbfvx0lg9prg52fk1jxar2bng2x6scac4g2c64kvp6vmf6x4mv"; depends=[copula Deriv stringi stringr]; }; - nCov2019 = derive2 { name="nCov2019"; version="0.4.6"; sha256="00jwywvb4prypn7cvwd1fb29jffvzdmg18axnl9ncncr0xjmvgx3"; depends=[downloader ggplot2 jsonlite RColorBrewer]; }; nFactors = derive2 { name="nFactors"; version="2.4.1.1"; sha256="08gydk231zijw3inp6d3hnc5mz0zywi4vzlvqb4jmibhv0hncdxv"; depends=[lattice MASS psych]; }; nJira = derive2 { name="nJira"; version="0.1.1"; sha256="0vh167kxljp68f0dx307wl6fp8nlp34vgrkr815z30mhx03p8j9r"; depends=[httr plyr rjson]; }; nLTT = derive2 { name="nLTT"; version="1.4.8"; sha256="10njdpz0dl3ckj4ph6hl4ppj1dyj8chrlmq6cl286ayqqqzj8qap"; depends=[ape coda testit]; }; @@ -13309,7 +13494,7 @@ in with self; { nandb = derive2 { name="nandb"; version="2.1.0"; sha256="1rbn4nibjzvwpccpmqn84w9a167f1avyl18kjlapy5dhafvixgbz"; depends=[assertthat autothresholdr BBmisc checkmate detrendr dplyr filesstrings ggplot2 glue ijtiff magrittr purrr Rcpp reshape2 rlang stringr viridis withr]; }; naniar = derive2 { name="naniar"; version="1.0.0"; sha256="1x4ljc6yji7312g6cg1shc85jqv5kaf2zlf5q7sdmqh3wryskvf2"; depends=[cli dplyr forcats ggplot2 glue magrittr norm purrr rlang tibble tidyr UpSetR vctrs viridis visdat]; }; nanoarrow = derive2 { name="nanoarrow"; version="0.1.0.2"; sha256="11cpgim2kpdai31byz9q5acai7y4x56fg62jbych3bvxlx1rwbcg"; depends=[]; }; - nanonext = derive2 { name="nanonext"; version="0.8.1"; sha256="050ql48h7p9s38grb76124ps0pzm5zg5pzq0aww4ijzyjy6q091x"; depends=[]; }; + nanonext = derive2 { name="nanonext"; version="0.9.0"; sha256="1vln046cmbsxqpw5p4fnd019yl42y592f5xv40qlg9fl0hf2d8rf"; depends=[]; }; nanostringr = derive2 { name="nanostringr"; version="0.4.0"; sha256="0df46pq93696xgdjky5qf5lk8caz48mb3a3fbrlda8z1rpv2i8bb"; depends=[assertthat ccaPP dplyr epiR forcats magrittr purrr rlang tibble tidyr]; }; nanotime = derive2 { name="nanotime"; version="0.3.7"; sha256="05fbdhbax6k1glidmgl0zjc7y7v1ppbpz4422q3jmxmfack7hwd7"; depends=[bit64 Rcpp RcppCCTZ RcppDate zoo]; }; naptanr = derive2 { name="naptanr"; version="1.0.1"; sha256="074pxm1c8k24b3gbn3ibbwpsixbmjq3wx9agxg3ljflny2s6hhqp"; depends=[data_table httr]; }; @@ -13329,21 +13514,23 @@ in with self; { natmanager = derive2 { name="natmanager"; version="0.4.9"; sha256="193rgf2m6pxcxhawgw0xcfc9jqqf3l11zrhjy35fmxansqxmw4im"; depends=[curl gh remotes usethis withr]; }; natserv = derive2 { name="natserv"; version="1.0.0"; sha256="1j6m0fddrhq36qfjmj99zs77vxk5waqkshxi37pr2ccnis9hzy9h"; depends=[crul jsonlite tibble]; }; natstrat = derive2 { name="natstrat"; version="2.0.0"; sha256="1i3qjd787clbafpkjd0mkp6i540061q9xl9kxlgh9f517ksg8zpz"; depends=[caret ggplot2 plyr pps ramify Rglpk rlang sampling slam]; }; - naturaList = derive2 { name="naturaList"; version="0.5.0"; sha256="15kpv73a5bcjhnqp2q6fbw3wdwr3f1zijvaj60hybxv652p8b71f"; depends=[dplyr fasterize htmltools leaflet leaflet_extras magrittr raster rlang sf shiny shinydashboard shinyWidgets sp stringr tidytext vegan]; }; + naturaList = derive2 { name="naturaList"; version="0.5.1"; sha256="0692bd7sdf3rlcp7sgjkvm7w5gyd3qv4390f7bz286krimsxaqzq"; depends=[dplyr fasterize htmltools leaflet leaflet_extras magrittr raster rlang sf shiny shinydashboard shinyWidgets sp stringi stringr tidytext tm vegan]; }; natural = derive2 { name="natural"; version="0.9.0"; sha256="0zxwbf3gg2h0bhl2w0md3rd162vlsgg0dv3187hc0ax7333cc4cx"; depends=[glmnet Matrix]; }; naturalsort = derive2 { name="naturalsort"; version="0.1.3"; sha256="0mz801y9mzld9ypp3xmsjw2d8l9q97sdnv09wrci9xi3yg2sjf6d"; depends=[]; }; + navigation = derive2 { name="navigation"; version="0.0.1"; sha256="129f2snh2mjp9mcifcxzh37zjhny8wlqhq00225pakl79kfzyyim"; depends=[expm leaflet magrittr MASS pbmcapply plotly rbenchmark Rcpp RcppArmadillo simts]; }; navigatr = derive2 { name="navigatr"; version="0.2.1"; sha256="0qlrzv17nlichfncynl710bs9yjqbx860dgqc4lnsh9l3mv5qjjl"; depends=[cli lifecycle pillar purrr rlang stickyr tidyselect vctrs]; }; nawtilus = derive2 { name="nawtilus"; version="0.1.4"; sha256="1agqx9wiiypkpjrwahwlw5qkvqgkh01swyzc75csf9698x0779pm"; depends=[MASS]; }; nbTransmission = derive2 { name="nbTransmission"; version="1.1.2"; sha256="0vaj2zfyvm2vm1ly1419ysxxrqkv73802n96ifajknh1pair31zk"; depends=[caret dplyr lubridate poisbinom rlang tidyr]; }; nbapalettes = derive2 { name="nbapalettes"; version="0.1.0"; sha256="1wrh2qcm90fcybhcc8wvs2s4a4z8y3mrhc28dvrkwynqwzsbalzs"; depends=[dplyr]; }; nbc4va = derive2 { name="nbc4va"; version="1.2"; sha256="1xf9nmaycxs1d8xz30lciflhqjfyyx72gaa05kssqnlv90f5cy08"; depends=[shiny]; }; + nbconv = derive2 { name="nbconv"; version="1.0.0"; sha256="09clb9368v27fwgp9b2j2q9d4jg8rcr6qhwwzk5izvh0airc9k5w"; depends=[matrixStats]; }; nbconvertR = derive2 { name="nbconvertR"; version="1.3.2"; sha256="0yhmz177r1miain65vspclahhz8cg7638ldbpsw8ylgf7a60l0sg"; depends=[]; }; nberwp = derive2 { name="nberwp"; version="1.2.0"; sha256="0v1y51rmm0h3w0v5y97wprhdhyc14r4iprdpkmdh8q9ajj1ds1c0"; depends=[]; }; nbfar = derive2 { name="nbfar"; version="0.1"; sha256="1gr9q83ff950x2lcyv9apsnjah4kpi8805mci9m0s3gvr7llpjq4"; depends=[glmnet magrittr MASS mpath Rcpp RcppArmadillo RcppParallel rrpack]; }; nblR = derive2 { name="nblR"; version="0.0.4"; sha256="1p1m1jml7grpjfp5qibffm3dx8zz37h216bpcwybm293naprmbfr"; depends=[cli magrittr]; }; nbody = derive2 { name="nbody"; version="1.33"; sha256="1ky07bi830z3c2fvxq0fmicsllm736b510q4zphff4rwljx1awf2"; depends=[magicaxis Rcpp]; }; nbpMatching = derive2 { name="nbpMatching"; version="1.5.1"; sha256="0f90k9vq05gkc0sgywb98frig63df0ih4z41dq7m2inx1zk5rqns"; depends=[Hmisc MASS]; }; - nc = derive2 { name="nc"; version="2020.8.6"; sha256="19qsa5k38ajsbigccpch05m156n5wnd7c54j09fanjrpzy2048w2"; depends=[data_table]; }; + nc = derive2 { name="nc"; version="2023.5.1"; sha256="1qkdm0yblvzlal24vcgwz2cl85m9fsbf3q12kj32zhyq8698h59q"; depends=[data_table]; }; ncappc = derive2 { name="ncappc"; version="0.3.0"; sha256="0bf00iskrd3x43839bwn957mi3qvm2dhcmqa7hl1ib0gp2r1cnzx"; depends=[bookdown Cairo dplyr ggplot2 gridExtra gtable knitr lazyeval magrittr PopED purrr readr reshape2 rlang rmarkdown scales tibble tidyr xtable]; }; ncar = derive2 { name="ncar"; version="0.4.5"; sha256="1ymxb3av7vd7vljr8h3ga6v01z6nf5j9mc095z0hi31d1khwrd02"; depends=[NonCompart rtf]; }; ncbit = derive2 { name="ncbit"; version="2013.03.29.1"; sha256="01352byijhwhcb7jji7bf5cm6v2yfz925f8wbivrx12x0c65fzw4"; depends=[]; }; @@ -13355,7 +13542,7 @@ in with self; { ncmeta = derive2 { name="ncmeta"; version="0.3.5"; sha256="1w47dn04brqac98k5s8a88nh6d6qnkcilq3w4pfczbdff1rv2xlk"; depends=[dplyr rlang RNetCDF tibble tidyr]; }; ncodeR = derive2 { name="ncodeR"; version="0.2.0.1"; sha256="1pxiqxhq2rxs8rxxhw1hbds7z2qkf7ws26a8wsbw815yn6jm10n8"; depends=[cli R6 rhoR]; }; ncpen = derive2 { name="ncpen"; version="1.0.0"; sha256="0vl4cbrsifr5s1691gacmp0lk3aqyq0yfafafzv6g3zygi4igrsa"; depends=[Rcpp RcppArmadillo]; }; - ncvreg = derive2 { name="ncvreg"; version="3.13.0"; sha256="04r7nf6516wi0bfxgk5rgbkw6qqa8aprsjivvgym19z9i6qaxanm"; depends=[]; }; + ncvreg = derive2 { name="ncvreg"; version="3.14.1"; sha256="1q6klmyf7gbzkinjhv83k8gn95jgn3vkc927wsmffqjqc3d71rd7"; depends=[]; }; nda = derive2 { name="nda"; version="0.1.6"; sha256="0pc0aiyx0lyyirgpd5g5syrnpm8pihsq0x1k0d7s05ibw5k9hq1g"; depends=[energy igraph leidenAlg Matrix psych visNetwork]; }; ndi = derive2 { name="ndi"; version="0.1.4"; sha256="1ydj6lvycm6awvrddmq9a9s24rd4xw86mzk8hfhrqx8plz8pj4k4"; depends=[car dplyr MASS Matrix psych sf stringr tidycensus tidyr]; }; ndjson = derive2 { name="ndjson"; version="0.9.0"; sha256="18j5bibranvbv84hvbsg6glmvhfancdsf2w6j99n3nw53bcgb12d"; depends=[data_table Rcpp tibble]; }; @@ -13383,10 +13570,12 @@ in with self; { neonOS = derive2 { name="neonOS"; version="1.0.0"; sha256="11jgsf8c7rjfdbn9qljirzwvpnn4wckid4p4syx6py3dqjb4r19f"; depends=[curl data_table httr jsonlite]; }; neonUtilities = derive2 { name="neonUtilities"; version="2.2.1"; sha256="0ry7cnzgah2848bzgdp72b169sxmk2jbvhrygmnknkfy8agfspqv"; depends=[curl data_table downloader httr jsonlite pbapply R_utils stringr tidyr]; }; neonstore = derive2 { name="neonstore"; version="0.4.4"; sha256="0fhjm6513kd4y3lry8dwcwk13ns92yk5h3san7ww2ahhdhy4hx9c"; depends=[DBI duckdb httr progress R_utils thor vroom zip]; }; + neotoma2 = derive2 { name="neotoma2"; version="1.0.1"; sha256="1wrml1yx3fi9ik84f19m6g28wxw2fn06i49f8yl41fmkqql31aa2"; depends=[assertthat dplyr geojsonsf gtools httr jsonlite leaflet lubridate magrittr mapview progress purrr rlang sf stringr tidyr uuid wk]; }; nephro = derive2 { name="nephro"; version="1.3"; sha256="08gryzr53cd5gc8ks7v9jicgk4lxcwcr7zd8vzsqvy04sh3scw9i"; depends=[]; }; neptune = derive2 { name="neptune"; version="0.2.3"; sha256="04d5rdcvnik9rj58npvs5z1r6ngs9hzc24wzix64czcynkkvkad0"; depends=[ggplot2 htmlwidgets plotly reticulate rstudioapi this_path]; }; nesRdata = derive2 { name="nesRdata"; version="0.3.1"; sha256="1lxvg11g8nizfn8sghirq2749fs9i4w1wiaz3v1djqbkzqcqfrcj"; depends=[dataone dplyr purrr rappdirs readr]; }; - nestedcv = derive2 { name="nestedcv"; version="0.4.4"; sha256="1zfdr42idrr7v76mkpvv58di8rqlw79c2k2pynfyaqxj3ac53dq0"; depends=[Boruta caret CORElearn data_table doParallel foreach ggplot2 glmnet hsstan matrixStats matrixTests pROC randomForest RcppEigen Rfast rlang SuperLearner]; }; + nestedLogit = derive2 { name="nestedLogit"; version="0.2.1"; sha256="1ac8rlli6pwc9mhngglvw2xif7x3vqfl90kxbgjsaa148ywfa27f"; depends=[broom car dplyr]; }; + nestedcv = derive2 { name="nestedcv"; version="0.6.2"; sha256="0v8x9cxlryjdxy1zxcrcs1iw6dv9asb3iy390wll2gg98rrd0ll8"; depends=[caret data_table doParallel foreach ggplot2 glmnet matrixStats matrixTests pROC reshape2 Rfast rlang]; }; nestedmodels = derive2 { name="nestedmodels"; version="1.0.4"; sha256="02181m0q9z5xqcinmi1vzids1mm6g0zc58vv2ngz09f3md62im3l"; depends=[cli dplyr generics glue lifecycle magrittr parsnip purrr recipes rlang rsample stringr tibble tidyr vctrs]; }; nestedpp = derive2 { name="nestedpp"; version="0.2.0"; sha256="0maw7ik209vdmm1fdnbi7chqy8wb1j1ql8jnry1y3af1g80lpa78"; depends=[ggplot2 reshape2 xtable]; }; nestfs = derive2 { name="nestfs"; version="1.0.3"; sha256="0qaxkg8m64admpw3zpwrd6z5lxdn0i5kl7dlixrp5r7c1j40aw3l"; depends=[dgof pROC]; }; @@ -13410,7 +13599,7 @@ in with self; { netie = derive2 { name="netie"; version="1.0"; sha256="0ja59rfg576z8rbv073aaab32qazlrqhvyvxpssibwsvbfcrhklm"; depends=[]; }; netjack = derive2 { name="netjack"; version="1.2.0"; sha256="060ygb0kxi0gx1ya38cmf5hhyy6jkwq5519azdqhq5i324cwzzm7"; depends=[brainGraph ggplot2 igraph Rdpack]; }; netmap = derive2 { name="netmap"; version="0.1.2"; sha256="02b3qb0yk6hawd23x44p5d14dvxryf0c7ydlj6d75dgpsddnfj1n"; depends=[ggnetwork igraph network rlang sf sna]; }; - netmeta = derive2 { name="netmeta"; version="2.8-1"; sha256="0xxray1ljf8smvipbcb04v5xpd2s8dsgwxqcj2ih5dsyrfj1cwgn"; depends=[ggplot2 magic MASS meta metafor]; }; + netmeta = derive2 { name="netmeta"; version="2.8-2"; sha256="132qkvpkami568w276qc269844z0d1l3yjbj71if4r2w8ra3p5wy"; depends=[ggplot2 magic MASS meta metafor]; }; netmhc2pan = derive2 { name="netmhc2pan"; version="1.3.1"; sha256="0q98rar7iglwxmf1274wrjcr7kp544ayrjhd286x68jmf51cqyrg"; depends=[assertive devtools dplyr rappdirs readr seqinr stringr testit tibble]; }; netplot = derive2 { name="netplot"; version="0.1-1"; sha256="11s6gcxcwbnd5x3sb4ryi4ks1bsbf7ylgc0yrygv58ipisxb2780"; depends=[igraph network sna]; }; netrankr = derive2 { name="netrankr"; version="1.2.0"; sha256="1b6wcvwqyqjfi1v8k8bf0ydsiyizpcgy47jf4z6v50sj22lwvxpn"; depends=[igraph Matrix Rcpp RcppArmadillo]; }; @@ -13448,30 +13637,30 @@ in with self; { newsanchor = derive2 { name="newsanchor"; version="0.1.1"; sha256="1s8qhq9jk5gnsimnvy7kdayya0ks0ly309l7zxm5rafj5x7k5vwn"; depends=[askpass devtools httr jsonlite lubridate tidyr xml2]; }; newscatcheR = derive2 { name="newscatcheR"; version="0.1.1"; sha256="026ggv81a7g426ir4p4yzzwlp8d5szhw0xsdbnmiqzyfvs2js0d0"; depends=[tidyRSS]; }; newsmap = derive2 { name="newsmap"; version="0.8.2"; sha256="1kvf2q0wdn5ilw10cyd9pbigh26fm9qr4sghbaln28x5f96f1fva"; depends=[Matrix quanteda quanteda_textstats stringi]; }; - newsmd = derive2 { name="newsmd"; version="0.4.0"; sha256="1pzsblkvs374nc6795llm9lbqj5z410g1mgr3q4fgpm0398zmsrv"; depends=[R6]; }; + newsmd = derive2 { name="newsmd"; version="0.5.1"; sha256="06iq628ysfbaawhx5yxkxh8a9d3nmzq87n80l88kj84k1lg1s5ph"; depends=[R6]; }; nextGenShinyApps = derive2 { name="nextGenShinyApps"; version="1.6"; sha256="0yvjchdxd8zxilq05x5ihjh10wzn9cz8cp6sr6jrnxgkiyrgh46q"; depends=[htmltools shiny]; }; - nfer = derive2 { name="nfer"; version="1.1.2"; sha256="0pawx7fqkx8p04l44id69gn6krh1hjdq4pwcbic84h4n4c0srdz3"; depends=[]; }; + nfer = derive2 { name="nfer"; version="1.1.3"; sha256="0s19ks4ildxqdbm4nv40f6c0rs1a6h9vx46654k8n0q18bgia448"; depends=[]; }; nfl4th = derive2 { name="nfl4th"; version="1.0.2"; sha256="0dx5ipnfnsii0imnxsi3vyfvihfdg0sim5vhpchi0ggcnjpqm3k4"; depends=[dplyr glue httr janitor jsonlite magrittr mgcv nflfastR nflreadr purrr stringr tibble tidyr tidyselect xgboost]; }; nflfastR = derive2 { name="nflfastR"; version="4.5.1"; sha256="0416bc4b40ydc842yg3y9safbrwgqlc431qxdzrh8zp4vcmg3lac"; depends=[cli curl data_table dplyr fastrmodels furrr future glue janitor mgcv nflreadr progressr rlang stringr tibble tidyr tidyselect xgboost]; }; nflplotR = derive2 { name="nflplotR"; version="1.1.0"; sha256="13ibhri9x5k4waay230s2xhc9i8qm51glq0bgdc1ily8grgrxhgs"; depends=[cachem cli data_table ggplot2 magick magrittr memoise nflreadr rappdirs rlang scales]; }; nflreadr = derive2 { name="nflreadr"; version="1.3.2"; sha256="063cdp5x5f0jx5x0ydb9cbg3x6zlbk3rxsjmpshlwx89szslszjd"; depends=[cachem cli curl data_table glue memoise rappdirs rlang]; }; nflseedR = derive2 { name="nflseedR"; version="1.2.0"; sha256="0nk6264alv0d8d1wj7xqk4m57rl1w185jj5qj58d9hwiy2wmzvqz"; depends=[cli data_table dplyr furrr future gsubfn magrittr nflreadr progressr purrr rlang tibble tidyr]; }; nflverse = derive2 { name="nflverse"; version="1.0.2"; sha256="00mjclyf0ph2wi3jbbxyhgckj9kppm8xhy10z5n6kskyw4wnvab0"; depends=[cli crayon magrittr nfl4th nflfastR nflplotR nflreadr nflseedR rlang rstudioapi]; }; - nftbart = derive2 { name="nftbart"; version="1.5"; sha256="1cdvfjr60nxjy79f41vm9p3dc9mn813w2py9pl4wzgdlq7wilm0b"; depends=[nnet Rcpp survival]; }; + nftbart = derive2 { name="nftbart"; version="1.6"; sha256="193507ii4f78g81937dixk7mja23sdicb0fvi0g3ryi0xjh913q0"; depends=[nnet Rcpp survival]; }; ngboostForecast = derive2 { name="ngboostForecast"; version="0.1.1"; sha256="019l9w7m6lkbf0m9mlsd24agjasbzi7dmy72faq1s4xg49a5xa9a"; depends=[dplyr forecast magrittr R6 reticulate]; }; ngram = derive2 { name="ngram"; version="3.2.2"; sha256="04cafc0i3605vlxmiwfyf91572ppg3wmm0hi50y9x7ai12bznchc"; depends=[]; }; ngramr = derive2 { name="ngramr"; version="1.9.3"; sha256="0iiaw8w3z8r45i129r78jwj4yicrp3lfzp7im6qmfn9k6v2bpsfv"; depends=[cli curl dplyr ggplot2 httr rjson rlang scales stringr textutils tibble tidyr xml2]; }; ngramrr = derive2 { name="ngramrr"; version="0.2.0"; sha256="1p8s4p3h27g647rxx9qjfad5dzbngjbmvhw4gz0jbsmfqrsf72by"; depends=[tau tm]; }; ngspatial = derive2 { name="ngspatial"; version="1.2-2"; sha256="09hdvmbna4m62zv18k5kj9718wzw7p43wnal2j6aa0m5sd2rx9rz"; depends=[batchmeans Rcpp RcppArmadillo]; }; - nhanesA = derive2 { name="nhanesA"; version="0.7.2"; sha256="1bnm9wwbiy92m3acsibwr79yx1d7qzvrvc0mqkkkv8nvxlnhxwpm"; depends=[foreign magrittr plyr rvest stringr xml2]; }; - nhdR = derive2 { name="nhdR"; version="0.5.9"; sha256="0zgcsj7469dpmfda62322yxamq9lahl3d9nxizdp48kh0xrmx8pl"; depends=[curl digest dplyr foreign ggplot2 httr maps memoise purrr rappdirs rgdal rlang rvest sf stringr units xml2]; }; + nhanesA = derive2 { name="nhanesA"; version="0.7.3"; sha256="190zc2q0grc94rjlzs41rbzx4yyalrq8vnkw9vy1f15jps0jnwpp"; depends=[foreign magrittr plyr rvest stringr xml2]; }; + nhdR = derive2 { name="nhdR"; version="0.6.0"; sha256="1rfvmla727l0x4vjqp2sjnbx9wy3996n6x7z8lrcz82lcq9hdbzl"; depends=[curl digest dplyr foreign ggplot2 httr maps memoise purrr rappdirs rlang rvest sf stringr units xml2]; }; nhdplusTools = derive2 { name="nhdplusTools"; version="0.6.2"; sha256="0w41jbh9g1178mnjnyiwxafm6z5ssnadh23ap6lsldysma633nwc"; depends=[dataRetrieval dplyr fst httr jsonlite magrittr pbapply prettymapr R_utils RANN rlang rosm sf tidyr units xml2 zip]; }; nhlapi = derive2 { name="nhlapi"; version="0.1.4"; sha256="1c5s7fd9agzk20xi8v38dk8ih6lmn8c90mxncyr996bhipgr7vl3"; depends=[jsonlite]; }; nhlscrape = derive2 { name="nhlscrape"; version="0.1.3"; sha256="0x6y747j6lha3jw4v2wavgd12xw5nx4m8biv9rmq9z0qy53vncjc"; depends=[DBI httr jsonlite RSQLite rvest xml2]; }; nhm = derive2 { name="nhm"; version="0.1.0"; sha256="1yf9hnbmfb7xj8mbhnq40wvd0pd88x9qspy1jr3x0n8nb75i3jlp"; depends=[deSolve maxLik mvtnorm]; }; nhs_predict = derive2 { name="nhs.predict"; version="1.4.0"; sha256="0lgyi1v940pjqfpwligw5ml6vagiz8wwsxbr9kfd1j70b5i0kjwd"; depends=[]; }; nhsnumber = derive2 { name="nhsnumber"; version="0.1.2"; sha256="10vm3591gjr13ggnagjkh0v2915yl05mwyphpckimmrrbc3zsdip"; depends=[]; }; - nhstplot = derive2 { name="nhstplot"; version="1.1.0"; sha256="1yk7q731a4y9mhngdsb8xdw2id6m1q78329ja19hdpi6nnd7nhgn"; depends=[ggplot2]; }; + nhstplot = derive2 { name="nhstplot"; version="1.2.0"; sha256="1m06w5mys5qwhah7hg3fwrzlbpckgvhn17jqzg36cyprpd02zx52"; depends=[ggplot2]; }; niaidMI = derive2 { name="niaidMI"; version="1.1.0"; sha256="0cg349qdlbixdyfzs5ahaf218a8gcpb2rvm0xaabsq9ray9gmq1a"; depends=[Rcpp]; }; nic = derive2 { name="nic"; version="0.0.2"; sha256="1bsmwdnkxmpp1wr7w4qmpm1x8vgllif0yqbn4n0k477bzlm9p7m4"; depends=[]; }; nice = derive2 { name="nice"; version="0.4-1"; sha256="1p8vmimiq9sbjvbx6c2wqwwkpnzw4kkdvjry6qyadmm3frwhj5qb"; depends=[]; }; @@ -13482,7 +13671,7 @@ in with self; { nightmares = derive2 { name="nightmares"; version="0.0.2"; sha256="1dmqrb17ncwazy1nb0zzfy7fq51ah7rz0xmhmmx6d30paaix2vc7"; depends=[raster rgdal sp]; }; nilde = derive2 { name="nilde"; version="1.1-7"; sha256="014scmwhq9i66i2mhvrb71y6ccv0xzjqfgm2sqff9lzjv9smy2im"; depends=[]; }; nima = derive2 { name="nima"; version="0.6.2"; sha256="0n8r8h1m0v0ssbpv6p32jby49f45qbicwr0awm7x054p48qk49cy"; depends=[assertthat dplyr ggplot2 ggthemes gridExtra gtools scales]; }; - nimble = derive2 { name="nimble"; version="0.13.1"; sha256="0c45rylb52vm313y4sa6d3x5611adxzxd9izn57y9958cjmwlw6w"; depends=[coda igraph R6]; }; + nimble = derive2 { name="nimble"; version="1.0.0"; sha256="0440wjij6h30p485bjix9w85gxxcm80cdk08lyga1lsvhbhwkkns"; depends=[coda igraph numDeriv pracma R6]; }; nimbleAPT = derive2 { name="nimbleAPT"; version="1.0.4"; sha256="0615fm6sa6nf607ay98r81m0pp8yvydpwzn3972imf87irps2k3l"; depends=[nimble]; }; nimbleCarbon = derive2 { name="nimbleCarbon"; version="0.2.1"; sha256="1dzkc0ay617a1l6m919sqxfcnx0z9kwfykn11f9hz6ddf4wgkysm"; depends=[coda doSNOW foreach nimble rcarbon snow]; }; nimbleEcology = derive2 { name="nimbleEcology"; version="0.4.1"; sha256="1z4byxsana1fa2y7qhmiqbb8ana6zbas0cmbgcc703mqh1642jb2"; depends=[nimble]; }; @@ -13508,7 +13697,7 @@ in with self; { nlmeVPC = derive2 { name="nlmeVPC"; version="2.6"; sha256="0ymiif377c6rjplzvs3s4bgc62ymw2l3cigx8rh779blb0w90qf8"; depends=[ggplot2 Hmisc optimx quantreg Rcpp RcppArmadillo timeDate]; }; nlmixr2 = derive2 { name="nlmixr2"; version="2.0.9"; sha256="1mfbm053jkmqkg7hdvzczpfx35r9xc6113vxl20561pk2zxh9fq7"; depends=[cli crayon lotri magrittr nlmixr2data nlmixr2est nlmixr2extra nlmixr2plot rxode2]; }; nlmixr2data = derive2 { name="nlmixr2data"; version="2.0.7"; sha256="06wchhd5rg76vws8lvh5yf8cia7d09ds61h9zizqk7j9azkx004j"; depends=[]; }; - nlmixr2est = derive2 { name="nlmixr2est"; version="2.1.4"; sha256="070bmxzz1r5wl0p09sng5kdhkahs2m34r6a60i739w9nxxbn3mp1"; depends=[backports BH checkmate cli knitr lbfgsb3c lotri magrittr Matrix minqa n1qn1 nlme nlmixr2data Rcpp RcppArmadillo rex Rvmmin rxode2 rxode2parse rxode2random symengine ucminf]; }; + nlmixr2est = derive2 { name="nlmixr2est"; version="2.1.6"; sha256="0r6mhavj9hlsn7ig4an22j7w0yrhrcrjpcy9r64m21bga791xgnz"; depends=[backports BH checkmate cli knitr lbfgsb3c lotri magrittr Matrix minqa n1qn1 nlme nlmixr2data Rcpp RcppArmadillo rex Rvmmin rxode2 rxode2parse rxode2random symengine]; }; nlmixr2extra = derive2 { name="nlmixr2extra"; version="2.0.8"; sha256="1sxbkqwhj6lg49c3ah4kylvak1lgj2was6mqsh82klvp72fd61fd"; depends=[checkmate cli crayon data_table digest ggplot2 ggtext lotri nlme nlmixr2est Rcpp RcppArmadillo rxode2 symengine]; }; nlmixr2lib = derive2 { name="nlmixr2lib"; version="0.2.0"; sha256="1clar5nw77dc07q1l014ajc5avfdd2n82chdpbv1gcs2mfyrwr9r"; depends=[checkmate cli nlmixr2est rxode2]; }; nlmixr2plot = derive2 { name="nlmixr2plot"; version="2.0.7"; sha256="0bpb9pxdjpwg3kqldbmw8vlq2w843dgyv0q13265kbcpwqhqmnma"; depends=[ggplot2 nlmixr2est nlmixr2extra rxode2 vpc xgxr]; }; @@ -13518,10 +13707,11 @@ in with self; { nlnet = derive2 { name="nlnet"; version="1.4"; sha256="13lv4b6chsjrhimny3wc1y9ljgbxmm1byj4j04n4vj8icn87gyfd"; depends=[coin e1071 earth fdrtool igraph randomForest ROCR TSP]; }; nloptr = derive2 { name="nloptr"; version="2.0.3"; sha256="1mqnjswm0dl6vqc8b2s5k3n1mhanaha3l33vh68dh6zx8q9aq9kv"; depends=[testthat]; }; nlpred = derive2 { name="nlpred"; version="1.0.1"; sha256="05jna8hzd5v36a0dwag6zr8ms1pkryas3qarwb946bkxlslffp27"; depends=[assertthat bde cvAUC data_table np Rdpack ROCR SuperLearner]; }; + nlpsem = derive2 { name="nlpsem"; version="0.1.0"; sha256="1gcxf7xnmbv0w1yjrgyjjx5bd92nbfswypi9zk1wk92scinax173"; depends=[dplyr ggplot2 Matrix nnet OpenMx readr stringr tidyr]; }; nlraa = derive2 { name="nlraa"; version="1.5"; sha256="01kx476wwi1dyjzlrmflpksl5ps1l7kjz6fcxp0wkyl830rvcnbv"; depends=[boot knitr MASS Matrix mgcv nlme]; }; nlreg = derive2 { name="nlreg"; version="1.2-2.2"; sha256="0gkcxg5m287axhvkl00xy26vidawhhb1ii1s13rh49v0yccwvvqh"; depends=[statmod survival]; }; nlrr = derive2 { name="nlrr"; version="0.1"; sha256="09wm8s5sadkhkq9pb3fjk66cb2xn8py46w1d7yp7fjhczh31bjsq"; depends=[Hmisc rms]; }; - nlrx = derive2 { name="nlrx"; version="0.4.3"; sha256="1w788fs9zkcbg99csiynd6cw9p8na2g5sg85065d17l6wxmxk7va"; depends=[crayon dplyr EasyABC furrr genalg GenSA igraph lhs magrittr progressr purrr raster readr rstudioapi sensitivity sf stringr tibble tidyr XML]; }; + nlrx = derive2 { name="nlrx"; version="0.4.4"; sha256="1ki8jhaa6ngqk046p61ssi0q9bskvc7vlz9j3d5ax0n118j5gx2q"; depends=[crayon dplyr EasyABC furrr genalg GenSA igraph lhs magrittr progressr purrr raster readr rstudioapi sensitivity sf stringr tibble tidyr XML]; }; nls_multstart = derive2 { name="nls.multstart"; version="1.2.0"; sha256="1aichzwg54jhw1y3csv2bx40cszbgzfa60hr17jb5133nxb99gwh"; depends=[dplyr minpack_lm purrr tibble tidyr]; }; nls2 = derive2 { name="nls2"; version="0.3-3"; sha256="05miqxfpg29jpf1p3bi347w5565bd3cih8dpvnc3p0i0hcbzmlkl"; depends=[proto]; }; nlsMicrobio = derive2 { name="nlsMicrobio"; version="0.0-3"; sha256="0vn0yv1h8idv91g7qhx8qfyvsvw4rbx7i8r8kfv13d40j1w4cfab"; depends=[nlstools]; }; @@ -13530,8 +13720,8 @@ in with self; { nlshrink = derive2 { name="nlshrink"; version="1.0.1"; sha256="0adnr7g3n3brwlvyix8wa7h59gj036l5anv8abqy80ysmfcmsp0y"; depends=[MASS nloptr]; }; nlsic = derive2 { name="nlsic"; version="1.0.2"; sha256="1dsnc5348l9vcxh9byglayadvpsmmzlpsgllny830s9fq1c1wzh3"; depends=[nnls]; }; nlsmsn = derive2 { name="nlsmsn"; version="0.0-6"; sha256="1wrqfmsb3l4bsdncyjl7hh3vwj9s6l43p7klww6f4k21asvh4p5s"; depends=[]; }; - nlsr = derive2 { name="nlsr"; version="2023.2.12"; sha256="1a2ijg79w6j8sa2cz5dnrmgbx3l8hnmns47g08p23nh05r1pdrlg"; depends=[digest]; }; - nlstac = derive2 { name="nlstac"; version="0.1.0"; sha256="0ag9zzzcadgwa43j16ff30r7g8jfihkwi76shv43igp52a11jr72"; depends=[Deriv doParallel foreach stringr]; }; + nlsr = derive2 { name="nlsr"; version="2023.5.8"; sha256="1ya38hk1xwvxnlymlx86imq6ww98y2mswf5fdm4s8r2qs3hy4bf4"; depends=[digest]; }; + nlstac = derive2 { name="nlstac"; version="0.2.0"; sha256="0q62bnwdnw4jjzj1gk74il4k5bc2lvaixckaqdqk9q4rkyx6p0z5"; depends=[Deriv foreach stringr]; }; nlstools = derive2 { name="nlstools"; version="2.0-0"; sha256="07givljg4ynp56613bnyh5a6cf41h6ihsrwp073zwnxr0l9c5gqf"; depends=[]; }; nlt = derive2 { name="nlt"; version="2.2-1"; sha256="10wf00qzf28dxjfvv12wsqxlfn6xz15wk8njrzgsgm9px1g6s21f"; depends=[adlift EbayesThresh]; }; nltm = derive2 { name="nltm"; version="1.4.4"; sha256="0ps6rl0yafg8ajwfk3iqbgjngq354bfbys619p5c94i498bigwcf"; depends=[survival]; }; @@ -13542,17 +13732,19 @@ in with self; { nmarank = derive2 { name="nmarank"; version="0.3-0"; sha256="1i2vagjq96q2vhr2lxbm3hqspddfq9qkqjcr8smni6ikmw32akil"; depends=[data_tree dplyr MASS meta mvtnorm netmeta rlang tibble tidyr]; }; nmathresh = derive2 { name="nmathresh"; version="0.1.6"; sha256="1jrf7k7an5y867k40aj28ib7vrjyqky2cslwzmfx28snp8ns1vd3"; depends=[ggplot2 gridExtra gtable Matrix nnls]; }; nmixgof = derive2 { name="nmixgof"; version="0.1.0"; sha256="0cbwrsxrcf8pn4ycn6r0z8jdidw5l6kdvwyrks69fq4pjzx988d6"; depends=[Rcpp unmarked]; }; + nmrrr = derive2 { name="nmrrr"; version="1.0.0"; sha256="031rh5m52gznl65r7cxh0p6l7qdaygbda7kcx352958dycmnxfs1"; depends=[DescTools ggplot2 tidyr]; }; nmslibR = derive2 { name="nmslibR"; version="1.0.7"; sha256="0658j1rir16s84aw7xw698pr8j2xp7j70rd306w04f3dxynsrrqm"; depends=[KernelKnn lifecycle Matrix R6 Rcpp RcppArmadillo reticulate]; }; - nmw = derive2 { name="nmw"; version="0.1.4"; sha256="1vj7b2p40x0h3xp45qzar86i9439mj8y3r5hnlbwa025jqdf2g0q"; depends=[numDeriv]; }; + nmw = derive2 { name="nmw"; version="0.1.5"; sha256="1wzqdg7cc5q9yw2axvzzlh60az1x6f7ycaqwadns1xr416x0kwfw"; depends=[numDeriv]; }; nnGarrote = derive2 { name="nnGarrote"; version="1.0.4"; sha256="0km7vx9qkfijj2af5ma4q88mhgkrw361hpv3n8dyzpr8654hrw4v"; depends=[glmnet]; }; nnTensor = derive2 { name="nnTensor"; version="1.1.13"; sha256="1xx2a61s0pzc54rwfgbh8jwnmh39kc95mviqqnircxlxdlc8z75n"; depends=[fields ggplot2 MASS plot3D rTensor tagcloud]; }; nna = derive2 { name="nna"; version="0.0.2.1"; sha256="17cz1jf7iv61wspqldfdwbdjhlr0wq09idkzlivfb8aik5w9f0z5"; depends=[]; }; - nncc = derive2 { name="nncc"; version="1.0.0"; sha256="1kgsz28j4ra0x3i8454fjmil7g62r2mjvnbljcp008q4slnp47sv"; depends=[cluster dplyr formula_tools furrr ggplot2 igraph mgcv mice rlang tidyr]; }; - nnet = derive2 { name="nnet"; version="7.3-18"; sha256="1l73v6l9ma0vsg4za3c6i3d6yjj7bpdmakbmrzp7205hbkxyp6nj"; depends=[]; }; + nncc = derive2 { name="nncc"; version="1.0.1"; sha256="131mka187q7367ba0ac0ad45hfwnbfmdlxikjdqkbi7ci234yj8l"; depends=[cluster dplyr formula_tools furrr ggplot2 igraph mgcv mice rlang tidyr]; }; + nndiagram = derive2 { name="nndiagram"; version="1.0.0"; sha256="0x6gv8rmvnqvvwxgqmkybmvmf4g94im0lardkmb5a043krvgh3i4"; depends=[dplyr]; }; + nnet = derive2 { name="nnet"; version="7.3-19"; sha256="1rrc70shnrnn7gyq5fhnmw841a06d8y0vp5pp8xv1lvhj931y959"; depends=[]; }; nnfor = derive2 { name="nnfor"; version="0.9.8"; sha256="0333c7h8lx1r9brw4dabyd28hyqvsr14hpsykbgx646k0xfkhrkr"; depends=[forecast generics glmnet MASS neuralnet plotrix tsutils uroot]; }; - nngeo = derive2 { name="nngeo"; version="0.4.6"; sha256="08k9qbz5afsvc1jgfqcp204k07ypy6ssc94dz0msb4mp2iawkmhn"; depends=[data_table nabor sf units]; }; + nngeo = derive2 { name="nngeo"; version="0.4.7"; sha256="0scfclw2prjfgm1liwbbys9ds00pyb0fk8q0mw6d6nqnbrw9kfnd"; depends=[data_table nabor sf units]; }; nnlasso = derive2 { name="nnlasso"; version="0.3"; sha256="1n7karlmgq61z9ywfx9xb5wvmxx40ydpnzzazj1xr70qlv5m0qk4"; depends=[]; }; - nnlib2Rcpp = derive2 { name="nnlib2Rcpp"; version="0.2.1"; sha256="0qydbbq7p9y2n91v2lfjxdm1fhpjvh7c3v2w912mk0c1bnzrhr8x"; depends=[Rcpp]; }; + nnlib2Rcpp = derive2 { name="nnlib2Rcpp"; version="0.2.2"; sha256="0a9mzj041zzjzzwwxcvz4vrbd8xl6hrv8m22a779fv2dyk8jnq5g"; depends=[Rcpp]; }; nnls = derive2 { name="nnls"; version="1.4"; sha256="07vcrrxvswrvfiha6f3ikn640yg0m2b4yd9lkmim1g0jmsmpfp8f"; depends=[]; }; nnspat = derive2 { name="nnspat"; version="0.1.1"; sha256="0h17p87fzsqizldgxvmis4s8wyyhc0f95amdl8j7fw2kcmrivnay"; depends=[MASS pcds Rdpack]; }; nnt = derive2 { name="nnt"; version="0.1.4"; sha256="1rrqq8m3plsq13hsh53h948wbx37gl87hplj4ms2pxxf1zwqsmnj"; depends=[survival survRM2]; }; @@ -13560,10 +13752,10 @@ in with self; { noaastormevents = derive2 { name="noaastormevents"; version="0.2.0"; sha256="1d93h8av0bbv7a56g6m000qpsnzqpfdla0fmcj5y8fbbqkipxnfr"; depends=[choroplethr choroplethrMaps data_table dplyr forcats ggplot2 hurricaneexposure lubridate magrittr maps plyr RColorBrewer RCurl rlang stringr tibble tidyr viridis XML]; }; noah = derive2 { name="noah"; version="0.1.0"; sha256="1ln23lp4c70fin9sjjhm4ngy47f8sk2mcljp5q449b7hq8gqi12c"; depends=[assertthat crayon digest dplyr hash magrittr purrr R6 rlang stringr]; }; noctua = derive2 { name="noctua"; version="2.6.1"; sha256="18wyf69f2j78sarjmzmsdwjfbm79r44s2lf0cslbr8gprnwc6kq8"; depends=[data_table DBI paws uuid]; }; - nodbi = derive2 { name="nodbi"; version="0.9.2"; sha256="167zhlyl0crn24zyw9rz9spa5xh8nxpzl94vqsk02r849n4qvzx9"; depends=[DBI jqr jsonify jsonlite stringi uuid]; }; + nodbi = derive2 { name="nodbi"; version="0.9.5"; sha256="166hz1jf6vly66afdmrgyqvb8bh6yhvllq6s20zs2w2l4ypddnq7"; depends=[DBI jqr jsonlite stringi uuid]; }; node2vec = derive2 { name="node2vec"; version="0.1.0"; sha256="03gfpn4xgmdwlrpwi9pdpnh6k75mwp85j6vywkj0jsxhz3rbg95g"; depends=[data_table dplyr igraph rlist vctrs vegan word2vec]; }; nodeSub = derive2 { name="nodeSub"; version="1.2.5"; sha256="11a744gdfb2lwya01g1gg4165f692hjwym40r0rdi1y4l0jk8l8h"; depends=[ape apTreeshape assertthat babette beastier beautier DDD geiger mauricer pbapply phangorn phylobase rappdirs Rcpp Rmpfr stringr testit tibble tracerer]; }; - nodiv = derive2 { name="nodiv"; version="1.4.0"; sha256="1k7pr9d1mgxw3szxcmnkkz498x7629wf2z65qlclywka3xgzpkxc"; depends=[ape picante raster sp vegan]; }; + nodiv = derive2 { name="nodiv"; version="1.4.1"; sha256="05ryspls03nwap54501mcxnhgvqpnf08c6iad6xcq056qi5glxp2"; depends=[ape picante raster sp vegan]; }; nofrills = derive2 { name="nofrills"; version="0.3.2"; sha256="1sclrzn7m0r4pxmv9vs0ay0l892p6kdz3yzdqwfkzzp8z45n6yzk"; depends=[rlang]; }; noia = derive2 { name="noia"; version="0.97.3"; sha256="18n2pmjmx1xqmshfvan1s7hlaciz05xhplg8zphcjhm2hfq7svv2"; depends=[]; }; noise = derive2 { name="noise"; version="1.0.1"; sha256="0xqcg79v03d5x783pby6gqxrhylm67xk4ic9ib4jmjyrrbqklad1"; depends=[preprocessCore]; }; @@ -13573,19 +13765,21 @@ in with self; { noisyr = derive2 { name="noisyr"; version="1.0.0"; sha256="05nvxz5qa4lsi62va74yq4m68nlacjkl8xj5nsq7dik3357y53dr"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 IRanges magrittr philentropy preprocessCore Rsamtools tibble]; }; nombre = derive2 { name="nombre"; version="0.4.1"; sha256="16hpr628j8rzxg5k71qsgc9xhz1w4gpi3fry5vp1mbwvalmlish2"; depends=[fracture]; }; nomclust = derive2 { name="nomclust"; version="2.6.2"; sha256="16pxv2vqikias18835crjfx5yignckvrw4imwqi18463mg6y7v9b"; depends=[cluster Rcpp]; }; - nominatimlite = derive2 { name="nominatimlite"; version="0.1.6"; sha256="1zzlqhn26bgag2sjq57crldyw0q0cs56l6c69xqp15w88022d32q"; depends=[dplyr jsonlite rlang sf tibble]; }; + nominatimlite = derive2 { name="nominatimlite"; version="0.2.0"; sha256="1p5pl3jgshyhvx5cxi9rf2qr8kd2l9ll7gxfhbj6vxbs9hh1mrcw"; depends=[dplyr jsonlite sf]; }; nomisr = derive2 { name="nomisr"; version="0.4.7"; sha256="0mf301nhsl71h79jxfkwa27j5nifsxp7y6vxbnx87rybr80b3hg1"; depends=[dplyr httr jsonlite rlang rsdmx snakecase tibble]; }; nomnoml = derive2 { name="nomnoml"; version="0.2.6"; sha256="07zh4csw41pkngjqgqwwh40k6ink0fsw758iknrk54dxfv59x6ba"; depends=[htmlwidgets lifecycle png rlang webshot]; }; nomogramEx = derive2 { name="nomogramEx"; version="3.0"; sha256="16235rwblnzn8k53817llwy2pzhnpifh6ij159nxymjm8ar9qpbp"; depends=[pracma rms]; }; nomogramFormula = derive2 { name="nomogramFormula"; version="1.2.0.0"; sha256="1j6g5kndl0n2g8acwq8pn09sk0bjcsphbcd77ha1j5dnwdmy73c0"; depends=[do Hmisc rms]; }; nomordR = derive2 { name="nomordR"; version="0.1"; sha256="02d5gk5pd4vpd61ys9x81maxjrmbshx1wdv6xxsvafrnz7a7pmks"; depends=[]; }; + nonLinearDotPlot = derive2 { name="nonLinearDotPlot"; version="0.5.0"; sha256="073qgada7bqz8jnpac4f3qb9iwsaiyb5m5y0fjgvyrjnjij29zxk"; depends=[]; }; noncompliance = derive2 { name="noncompliance"; version="0.2.2"; sha256="1lcybgj95z7lz7p26xbsdiv0vvms4ab4f8kad0pclacf1l43v0j6"; depends=[data_table Rcpp]; }; noncomplyR = derive2 { name="noncomplyR"; version="1.0"; sha256="1a9m6r9cizw42nmy24jdsrsbllg5z84fs8b239axnh1fxzskg2qy"; depends=[MCMCpack]; }; nonet = derive2 { name="nonet"; version="0.4.0"; sha256="1043vplj8libbzll172h82dfwnz2lsdba5na2g9liryg8p08h4v8"; depends=[caret dplyr e1071 ggplot2 glmnet pROC purrr randomForest rlang rlist tidyverse]; }; nonlinearICP = derive2 { name="nonlinearICP"; version="0.1.2.1"; sha256="1m9a1f0yrbjl0nx2l7r76pyi78b2bxj8v4jx92yga91f975mw6np"; depends=[caTools CondIndTests data_tree randomForest]; }; nonlinearTseries = derive2 { name="nonlinearTseries"; version="0.2.12"; sha256="0fdyr7a5pac40wrrn6frj0q8pn03dic5a2rls3zr85yj48mimyfs"; depends=[lifecycle Matrix Rcpp RcppArmadillo tseries zoo]; }; nonmem2R = derive2 { name="nonmem2R"; version="0.2.4"; sha256="1lnm2mniccpsk30njmi0b18aizblg5wadm3k2kdviyxi8j2735rw"; depends=[ggplot2 gridExtra lattice latticeExtra MASS mvtnorm reshape2 splines2]; }; - nonmemica = derive2 { name="nonmemica"; version="1.0.0"; sha256="0ssinsbgbxnplfnpxr94m9rz9q503acf8ddg0ih0dcs75ypqj4fx"; depends=[csv dplyr encode lazyeval magrittr metaplot rlang spec tidyr xml2]; }; + nonmem2rx = derive2 { name="nonmem2rx"; version="0.1.0"; sha256="1fn5z1w1xjx5b6dfwgbkxqb6rn4251nbjy3dwc84if7pc71kb1nk"; depends=[checkmate cli crayon data_table digest dparser ggforce ggplot2 lotri magrittr qs Rcpp rxode2 rxode2parse xml2]; }; + nonmemica = derive2 { name="nonmemica"; version="1.0.1"; sha256="06fn7iwc30la2k6ib9zr7hvlygbh0267rnk1ybys4swq4jdmmigd"; depends=[csv dplyr encode lazyeval magrittr metaplot rlang spec tidyr xml2]; }; nonneg_cg = derive2 { name="nonneg.cg"; version="0.1.6-1"; sha256="1ppwv5yad8v7qhjr4z5p5vl51ry3sxqbmg0ynkx11j67byggn6xf"; depends=[Rcpp]; }; nonnest2 = derive2 { name="nonnest2"; version="0.5-5"; sha256="1ddaqwx8i3ygwvxf11mc8xhgk4nkvnail99nr5szq8i168752zq2"; depends=[CompQuadForm lavaan mvtnorm sandwich]; }; nonpar = derive2 { name="nonpar"; version="1.0.2"; sha256="0gflldd3kjbpdlvbwi073igj6shcqr9g5x6zcp5gfa12404qpflq"; depends=[]; }; @@ -13596,8 +13790,8 @@ in with self; { nor1mix = derive2 { name="nor1mix"; version="1.3-0"; sha256="1817wcvlmxs70vs4db0jkxd7i037744zz8ay3c2a9949z29fxr4w"; depends=[]; }; nord = derive2 { name="nord"; version="1.0.0"; sha256="1gisqca85vzbqq5hs5bgqjgrjyksxj176x97kv9vv6mwll8kijl9"; depends=[ggplot2]; }; nordklimdata1 = derive2 { name="nordklimdata1"; version="1.2"; sha256="0c2hbh3qy8nrs275lxpzfgqsfgwp81m4kv0layvnjj09fcybm54x"; depends=[]; }; - norgeo = derive2 { name="norgeo"; version="2.1.4"; sha256="1i9hxpcdg89wc2m86kf26gn49lvivjc389nkf6r748gpqyrwd64m"; depends=[data_table DBI httr jsonlite magrittr odbc RSQLite writexl]; }; - norm = derive2 { name="norm"; version="1.0-10.0"; sha256="1iqcsa7mj9ahnkbsri0cf2wlhh2bv86vwsh3iwihh42cywd7k123"; depends=[]; }; + norgeo = derive2 { name="norgeo"; version="2.1.6"; sha256="072mx0kmfn01gpdy48l7889i10kjr675bvwk3d87jldzls6y1pwb"; depends=[data_table DBI httr jsonlite magrittr odbc RSQLite writexl]; }; + norm = derive2 { name="norm"; version="1.0-11.0"; sha256="0bj0d518c5cld1h2ymm7sjhd6b3v2h3w8rcn9b5mki1fg20lx2nd"; depends=[]; }; norm2 = derive2 { name="norm2"; version="2.0.4"; sha256="0ahz6x59k00pqalzjc3ajiby1ysmarjssga9amwh9vd6vmzzyfb7"; depends=[]; }; normalizeH = derive2 { name="normalizeH"; version="1.0.0"; sha256="19lychfrv57yk245rzais4hx17csz1s6wm5vk6p7ypr6h9slf2cq"; depends=[]; }; normalp = derive2 { name="normalp"; version="0.7.2"; sha256="0fqpz6v9v3xjmyh7mh2yvkjdn3v4d0nk93x7s0gj28kazl7137kz"; depends=[]; }; @@ -13622,10 +13816,12 @@ in with self; { nparcomp = derive2 { name="nparcomp"; version="3.0"; sha256="1cs1idaylxdajb9vwpp6rkk56178i4c9nd0rxj8jbmdr56w4nrgq"; depends=[multcomp mvtnorm]; }; nparsurv = derive2 { name="nparsurv"; version="0.1.0"; sha256="1qy9qkkpqrk49vjxbyvl25i4kfk0py6v64izd8lmaw38dynybpy2"; depends=[survival TH_data]; }; npbr = derive2 { name="npbr"; version="1.8"; sha256="1mvl16z4s517a87ljl1ksr1ixrz3c6v22hv36s6x60f9rcs96jj8"; depends=[Benchmarking np quadprog Rglpk]; }; + npclust = derive2 { name="npclust"; version="0.1.0"; sha256="0a1las0vxm4mhwvds66lvq87kb140sjrnjq5sihbrrh7wpbq31zg"; depends=[ggplot2 MASS]; }; npcopTest = derive2 { name="npcopTest"; version="1.03"; sha256="1kpa3avi95aa93y038f4zqhhdp8vdscdk0c6397qmqjg34hf1dnr"; depends=[]; }; npcp = derive2 { name="npcp"; version="0.2-5"; sha256="0mh5z4flksj7v1klylwqn2dxn5sbvs16sdy46l7y7n93i4v3pqvi"; depends=[sandwich]; }; - npcs = derive2 { name="npcs"; version="0.1.0"; sha256="00gxi2yalp7pcykxmm1kafv3fpyqwc7xvmv10z6x3yngk62rj0r6"; depends=[caret dfoptim e1071 foreach formatR magrittr MASS naivebayes nnet randomForest rpart smotefamily]; }; + npcs = derive2 { name="npcs"; version="0.1.1"; sha256="0bd81fi1zg06s39msdrnhh0yv7y7zr2nn110w8fm9vdlcx100gam"; depends=[caret dfoptim dplyr forcats foreach formatR ggplot2 magrittr nnet smotefamily tidyr]; }; npcure = derive2 { name="npcure"; version="0.1-5"; sha256="0hf6w8w76qmjdsd6zgg85jj5ypmmg1a1ryzqwnxcypsdjxaq539z"; depends=[permute zoo]; }; + npcurePK = derive2 { name="npcurePK"; version="1.0-2"; sha256="1p1vl9w8z8xq6bfsn1kgq5cnzyf4aiax8iis0vb4xcxrb2wl0mav"; depends=[data_table DescTools doParallel foreach npcure]; }; npde = derive2 { name="npde"; version="3.3"; sha256="1my925wrl3izhidim49z787pc6fvh41kzgdqx24llgz8wsa9xb6q"; depends=[ggplot2 gridExtra mclust rlang scales]; }; nph = derive2 { name="nph"; version="2.1"; sha256="100x7ar498s18rs8m4bx0kf4h8vqk1clb4z4kdnlni16lrpc90hy"; depends=[ggplot2 muhaz multcomp mvtnorm survival]; }; nphPower = derive2 { name="nphPower"; version="1.0.0"; sha256="0jqrbjm56nmhrmhsidz0bzyifq6kpqch8r64j8vd98b7xgcb6w4h"; depends=[MASS mvtnorm survival zoo]; }; @@ -13648,10 +13844,11 @@ in with self; { nproc = derive2 { name="nproc"; version="2.1.5"; sha256="1p5wjz0rafg27fsl48l9pmki3px1k0pav3ignz4swik5i1nhnc8w"; depends=[ada e1071 glmnet MASS naivebayes randomForest ROCR tree]; }; nprotreg = derive2 { name="nprotreg"; version="1.1.0"; sha256="0krzfxy4nlzwd9dgfk9wds3h7yhdsfyh4mw28kvp39xsj7qrp186"; depends=[foreach]; }; npsf = derive2 { name="npsf"; version="0.8.0"; sha256="011y8k3sdhhgzf4yn0wdxx55yv4kdpgyhj0bbm6krjdpphnr9557"; depends=[Formula Rcpp]; }; + npsp = derive2 { name="npsp"; version="0.7-11"; sha256="17nadnxwp8jm68sqsa4yvhbllw0p8csicsipi7mdw9gfx0cc5dzx"; depends=[quadprog sp spam]; }; npsr = derive2 { name="npsr"; version="0.1.1"; sha256="1fzvilzjg9z05991sr1s1bdp17kfl6d1580qdllk8is9ac06np0v"; depends=[gmp infotheo MASS]; }; npsurv = derive2 { name="npsurv"; version="0.5-0"; sha256="1ihxhb42cga1hssj2jv4ah0f4hlwsky899ij5261fzh1wxvdp1xw"; depends=[lsei]; }; npsurvSS = derive2 { name="npsurvSS"; version="1.0.1"; sha256="0k9xvxii5527vynf7yy50j7z4jhxgk5ydhdcaaygm9ynx5yq14ip"; depends=[]; }; - nptest = derive2 { name="nptest"; version="1.0-3"; sha256="1s6j4hs3m5pyh5ajy85gcclgb3l3ily92r4ak7wl5mn6vsnn6rvc"; depends=[]; }; + nptest = derive2 { name="nptest"; version="1.1"; sha256="1yfxpw3xlscv0maqgvadxj93qgs25w027lk2br1zlckll8dvdakz"; depends=[]; }; npwbs = derive2 { name="npwbs"; version="0.2.0"; sha256="029vxc6iy1p6nv0vw6097rvpkwlf0a24643gr6dbycpbail9qlqg"; depends=[]; }; nrba = derive2 { name="nrba"; version="0.1.0"; sha256="04vjviwk4f4k7yw7njyvbaj0gb0fpwrlwr00af4jb241jgdhr7qf"; depends=[broom dplyr magrittr survey svrep]; }; nricens = derive2 { name="nricens"; version="1.6"; sha256="0fpgp6k3mhb0qxbx6248k9bscnmlzwj70mqh631a1nc4cpdjvw3q"; depends=[survival]; }; @@ -13668,6 +13865,7 @@ in with self; { nsp = derive2 { name="nsp"; version="1.0.0"; sha256="1dbq6i79r3rlf69scgczv0p940mcza1l90l42af7xdhan0gh6z99"; depends=[lpSolve]; }; nspmix = derive2 { name="nspmix"; version="1.5-0"; sha256="1jaaw5ibn614yhlid0csnzj31npdx5zivm2nhnvyghzcmvyxavr8"; depends=[lsei]; }; nsprcomp = derive2 { name="nsprcomp"; version="0.5.1-2"; sha256="1zlc1ximx96f235c0l8qfs6vbp1kpnbf943wxsfahnnlnxvwi59f"; depends=[]; }; + nswgeo = derive2 { name="nswgeo"; version="0.3.3"; sha256="0nny1dh0c3nkwglqi6rgwgri8hx1h66bzfpy388bjcyc31nkmihr"; depends=[cartographer sf]; }; nsyllable = derive2 { name="nsyllable"; version="1.0.1"; sha256="1rxzfivg5pkx8485l4bxxrdnvik31g5jps5l386x0w7mfs6498jg"; depends=[]; }; nucim = derive2 { name="nucim"; version="1.0.11"; sha256="12qfs4xd8lnkjhb0gkvxym07rndrwh5idvppj16v78amrk96rj5z"; depends=[bioimagetools EBImage fields stringr]; }; nullabor = derive2 { name="nullabor"; version="0.3.9"; sha256="19nfmsnzndg9pdjg7m9w4vm4c3209ny52cpjdhmmhggvf7dxaiyg"; depends=[dplyr forecast fpc ggplot2 magrittr MASS moments purrr rlang tibble tidyr tsibble viridis]; }; @@ -13714,10 +13912,10 @@ in with self; { occupancy = derive2 { name="occupancy"; version="1.2"; sha256="0j50vg1405n1hp72xqsq1hp3gdbfx5yq9w1zdv6dzjc6vjhbx00d"; depends=[matrixStats]; }; occupationMeasurement = derive2 { name="occupationMeasurement"; version="0.2.0"; sha256="0igqh8gwpdmrb47k6s7bhyjjjs3qy1g1nx27i6rsbyw52n97sdvm"; depends=[data_table digest shiny stringdist stringr text2vec tm]; }; ocd = derive2 { name="ocd"; version="1.1"; sha256="06pyc352pvn85k76z9797gwk0ksbb3snvh6krysp68k3lcygq872"; depends=[]; }; - oce = derive2 { name="oce"; version="1.7-10"; sha256="1zv8jpnmfwq59plsqzjjj0hi0bbg5zfm5w7hcl7m5xkkmsvyx6dq"; depends=[gsw Rcpp]; }; + oce = derive2 { name="oce"; version="1.8-0"; sha256="1b9fp9mlbpw39v0rcwjbkrdl14n34f820lignz9h8hpwm6gsjrb3"; depends=[gsw Rcpp]; }; oceCens = derive2 { name="oceCens"; version="0.1.1"; sha256="03rk7lw8bkd0z0hiwvh5akbvw54bjay84989rznkgcmiljxbxpr4"; depends=[survival]; }; oceanexplorer = derive2 { name="oceanexplorer"; version="0.0.2"; sha256="1n8lxhnq7asfjlpgjs3xwngnc9dyk4q5yb2jn0kpb87i214z68hs"; depends=[bslib dplyr DT fs ggplot2 glue maps miniUI ncmeta purrr rlang RNetCDF rstudioapi sf shiny shinyFeedback shinyjs stars thematic waiter]; }; - oceanic = derive2 { name="oceanic"; version="0.1.5"; sha256="0mpvp19nmwk1wqiy4k938504ykrsklc37bkgv6r69kdx48i7pi14"; depends=[broom ggplot2 maps rgdal rgeos sf sp spData]; }; + oceanic = derive2 { name="oceanic"; version="0.1.6"; sha256="12lrn13xfrxny8nqhjh5qg61bx1y8akyqxf7slbpg9npbwp04f1n"; depends=[broom ggplot2 maps sf sp spData]; }; oceanis = derive2 { name="oceanis"; version="1.8.5"; sha256="13zdzqjlf5pihji6np9a3m2j5ycy4jvfl75knzry2ir78zr9ngj7"; depends=[classInt dplyr DT ggplot2 htmlwidgets leaflet leaflet_extras lwgeom sf shiny shinyBS shinyjs shinythemes stringr webshot zip]; }; oceanmap = derive2 { name="oceanmap"; version="0.1.1"; sha256="06h4yxqcn3rjr3m2n82w128z110a4k5rg6msrbd0gcqksxc4vd2v"; depends=[abind extrafont fields lubridate mapdata maps maptools ncdf4 plotrix raster sp]; }; oceanwaves = derive2 { name="oceanwaves"; version="0.2.0"; sha256="1v4gj4ippv1l3r77z2ic19x5zi5lpsh5wihaqay3264zhpb3kv9a"; depends=[bspec ggplot2 signal]; }; @@ -13727,7 +13925,7 @@ in with self; { ocomposition = derive2 { name="ocomposition"; version="1.1"; sha256="0fk8ia95yjlvyvmjw7qg72piqa40kcqq9wlb3flc6a81pys1ycb5"; depends=[bayesm coda]; }; ocp = derive2 { name="ocp"; version="0.1.1"; sha256="0q52s8j3z3xwnma3sxx6019qxid66bf0a43w4g8xjagplwps57dx"; depends=[]; }; ocs4R = derive2 { name="ocs4R"; version="0.2-3"; sha256="09zl9jl1kzvyq0wccp41j32pr3as93qh250iaawhwkpcswjpyl89"; depends=[curl httr jsonlite keyring openssl R6 XML]; }; - octopus = derive2 { name="octopus"; version="0.1.2"; sha256="1zlhczp09yxk7kzn728zz82j105qb5krp33mz73v4h3avlskgq5y"; depends=[bslib DBI dplyr DT glue httr janitor rio shiny shinyAce shinyjs]; }; + octopus = derive2 { name="octopus"; version="0.2.0"; sha256="186nld708ksgv9if2wbj9xmc5z3g68nsjlyfy3mvg3wgbfhnj03a"; depends=[bslib DBI dplyr DT glue httr janitor rio shiny shinyAce shinyjs]; }; octopusR = derive2 { name="octopusR"; version="1.0.0"; sha256="1zkb52ihl8c4kyljfmj36zavjpns4mbfxbwkpvlqk96lm44wp70s"; depends=[askpass cli glue httr2 rlang tibble]; }; od = derive2 { name="od"; version="0.4.0"; sha256="1mnf2dl3zj7zamibnv8ai0z2wbbwplzvjbzq3mswj6jc7386ja43"; depends=[sfheaders]; }; odbc = derive2 { name="odbc"; version="1.3.4"; sha256="0nmydcfk10f635fd2aawqnkqlwp3xv8zs74iqblsycxr37ni4xcs"; depends=[bit64 blob DBI hms Rcpp rlang]; }; @@ -13737,14 +13935,14 @@ in with self; { oddsapiR = derive2 { name="oddsapiR"; version="0.0.3"; sha256="0vjmmbyxsnc40sv053s3jgwssxnn897kf5hkx1vbxrym7zx775k9"; depends=[cli data_table dplyr glue httr janitor jsonlite magrittr rlang rvest tidyr]; }; oddsratio = derive2 { name="oddsratio"; version="2.0.1"; sha256="1db0pxi5j18rvi8dyc2xx1im3l269775vpjjavapjcv2pylfg5r0"; depends=[ggplot2 mgcv]; }; oddstream = derive2 { name="oddstream"; version="0.5.0"; sha256="1nwjw7fq6b4jdq4m2w0a7xgmzjg5a6pbma1d3r9msiz8rnhb0c54"; depends=[dplyr ggplot2 kernlab ks magrittr MASS mgcv moments mvtsplot pcaPP RColorBrewer RcppRoll reshape tibble tidyr]; }; - odeGUTS = derive2 { name="odeGUTS"; version="1.0.1"; sha256="1c3w934dwh5jsh5z169isv9kqh8xbfgp4rk7k1sp8mj0kvy8nqc4"; depends=[deSolve dplyr magrittr tidyr zoo]; }; + odeGUTS = derive2 { name="odeGUTS"; version="1.0.2"; sha256="0ra9svfwdvsil5hqbmyxhnz80zm905v1m2lm8s5cbkjkfs5fsnls"; depends=[deSolve dplyr magrittr tidyr zoo]; }; odeintr = derive2 { name="odeintr"; version="1.7.1"; sha256="0wfb5lgv10p0qyfbn9hdg14bda37v43lpgbwv6nbw63zzbsbazqi"; depends=[BH Rcpp]; }; odetector = derive2 { name="odetector"; version="1.0.1"; sha256="094i6ykv3s0c5yhdnlgpkz1wb6pr9k6r3vsh7zgkxyy5iayi6dlv"; depends=[ppclust]; }; odin = derive2 { name="odin"; version="1.2.4"; sha256="0m8afhbpjdcdscgw7ngsdr7n8qpxicn3pqjrsjbwi4hrk5aii7ry"; depends=[cinterpolate deSolve digest glue jsonlite R6 ring withr]; }; odk = derive2 { name="odk"; version="1.5"; sha256="0fcnr4c1clwx1sk6fgg4cx506gdi90n2h05g0i47p4s5bra0qwwl"; depends=[gsheet openxlsx]; }; odns = derive2 { name="odns"; version="1.0.2"; sha256="0a2ifmyrsfih5a7jwc0b6l9wl7c1s5x08fq5bfm27xm9jnb8fwsn"; depends=[data_table glue httr jsonlite]; }; odpc = derive2 { name="odpc"; version="2.0.5"; sha256="0cbkq8parb8br1j386xk5mgwz8gkmwvp79f9sjvzhs7z6wlbp0pv"; depends=[doParallel foreach forecast MASS Rcpp RcppArmadillo]; }; - odr = derive2 { name="odr"; version="1.4.1"; sha256="0ivfaksghapjc4ygq2va1qll9dcdhc5xmjbsyipa4smc7jlh7fpw"; depends=[]; }; + odr = derive2 { name="odr"; version="1.4.2"; sha256="1kv4258galnl5za6pywdgbcbjcm1qmqhvhjz1dvz1p5s1lnwv28h"; depends=[]; }; oem = derive2 { name="oem"; version="2.0.11"; sha256="0p9s68zgma9mcjnz0xg6h07yp38rqj209asg18hji8528iazbv8g"; depends=[BH bigmemory foreach Matrix Rcpp RcppArmadillo RcppEigen]; }; oenb = derive2 { name="oenb"; version="0.0.2"; sha256="1jgxw7ycx2lcdzglg9nix8k08fs4r6i5jdsjzrd6w1dg6smsinl5"; depends=[dplyr XML]; }; oesr = derive2 { name="oesr"; version="0.1.0"; sha256="078jjvm9d0g8jaab0x2z4h7h8m2pznamiglhkwv07xc65cskjmpb"; depends=[broom dplyr estimatr extrafont ggplot2 rlang sandwich tibble]; }; @@ -13763,8 +13961,9 @@ in with self; { ohun = derive2 { name="ohun"; version="0.1.0"; sha256="1i8ri0fsy15m23j0h3g58i1qm0icz7k5f03k5lrg3c7jz9a8l7jn"; depends=[crayon fftw igraph knitr pbapply RCurl rjson rlang seewave Sim_DiffProc sp tuneR viridis warbleR]; }; oii = derive2 { name="oii"; version="1.0.2.1"; sha256="1n41hikn53ikyynsravg127cw5csa8s0s1l63w5hym7c6j625ya5"; depends=[Deducer gmodels rapportools]; }; ojsr = derive2 { name="ojsr"; version="0.1.2"; sha256="0nwdws9kqnya9qjc939b7ksrf7ri6d25zzcdxhyhabirhnrqdg7m"; depends=[dplyr magrittr purrr rlang rvest tidyr urltools xml2]; }; + okxAPI = derive2 { name="okxAPI"; version="0.1.1"; sha256="0wysfpkij9l265clw6qi4zpr1c860idxfp82xz2nmy1l5b2n8ri0"; depends=[base64enc data_table digest httr jsonlite R6 websocket]; }; olctools = derive2 { name="olctools"; version="0.3.0"; sha256="1gbchwynvmryarz32f24v56kj57h7x6nrrm878fkjkpq140cqwzz"; depends=[Rcpp]; }; - oldbailey = derive2 { name="oldbailey"; version="1.0.0"; sha256="0w58q38rfb1siadib6hbsya82f9zpjvmvx46ys37fw59p1glilqw"; depends=[dplyr httr jsonlite rvest stringr tidyr]; }; + oldbailey = derive2 { name="oldbailey"; version="1.1.0"; sha256="17wvnz23rhl0n50mq2b93523kxdvc3imvfii9b33viwcm4cq6zkn"; depends=[dplyr httr jsonlite rvest stringr tidyr]; }; ollg = derive2 { name="ollg"; version="1.0.0"; sha256="1xjfn3hlmmx65kphchhxqa9fx6qmkiyx24lp19si1y3v92wdv2i9"; depends=[]; }; ollggamma = derive2 { name="ollggamma"; version="1.0.2"; sha256="1990hr9gww636xr4gkvc816hd0pc78nw3ypbzflkh5g3pmsn7bc2"; depends=[]; }; olr = derive2 { name="olr"; version="1.1"; sha256="1l6m2gbglh8idy4k2q23qgfb7in1a6pnwiji1gbygfan6paw4xza"; depends=[plyr]; }; @@ -13776,14 +13975,14 @@ in with self; { ompr = derive2 { name="ompr"; version="1.0.3"; sha256="01ph26d4lxvmzmb9lhc8rn235crpcc4xcag8wfrsxcv7r0jz6wka"; depends=[data_table fastmap lazyeval listcomp Matrix rlang]; }; ompr_roi = derive2 { name="ompr.roi"; version="1.0.1"; sha256="0hgqanpijc31vlj3cnwx2fkr6i5y5wrl0ib7nxcz2pz1yb3gxwbg"; depends=[Matrix ompr ROI slam]; }; omsvg = derive2 { name="omsvg"; version="0.1.0"; sha256="018sphpmmgpq5alag0il83q51f3r3jx3pnnzjrvg4gn6691nkwvz"; depends=[dplyr gt htmltools magrittr rlang sass xml2]; }; - omu = derive2 { name="omu"; version="1.0.9"; sha256="0pi7xdjlw4p426x400xwq1xrjcd0y42cmn832598vzjs5v71fv4y"; depends=[broom caret dplyr FSA ggfortify ggplot2 httr magrittr plyr randomForest rstatix stringr tidyr]; }; + omu = derive2 { name="omu"; version="1.1.0"; sha256="1ha1x0df5wb4lajid3w6ab52w1jhhflfp1kp88gjhg9h2kch7prl"; depends=[broom caret dplyr FSA ggfortify ggplot2 httr magrittr plyr randomForest rstatix stringr tidyr]; }; onadata = derive2 { name="onadata"; version="0.1"; sha256="0l7fqskgqm421mcijmbbb1xgi99y1j673qil5r9whwfdxk78xgqc"; depends=[]; }; onbabynames = derive2 { name="onbabynames"; version="0.0.1"; sha256="13sp9gnqnsx2b8dq13qnkin813clnanh6hzv3vi7bxy514pvmisj"; depends=[tibble]; }; onbrand = derive2 { name="onbrand"; version="1.0.2"; sha256="1dxwxf0jy0cvizwdk0429x4bgzrk99mr1frfrf8hdw18ysjqwcfz"; depends=[dplyr flextable ggplot2 magrittr officer rlang stringr yaml]; }; onc_api = derive2 { name="onc.api"; version="2.0.1.0"; sha256="10scbhg6aniqzrbkblhfhz9ni710xzppbzfrr4wrhsy1z5y2nfwc"; depends=[anytime crayon httr humanize lubridate stringi testthat tictoc]; }; once = derive2 { name="once"; version="0.4.1"; sha256="0yshpww3rq68m0qx7kid3zlcxi1nf81vmziclyvpg61aikj8fhx5"; depends=[magrittr]; }; oncoPredict = derive2 { name="oncoPredict"; version="0.2"; sha256="1slq5vp78n5hcq24vlg35r6xansdgriyjw8y9iyb0lj3cdaq38c3"; depends=[BiocGenerics car gdata genefilter GenomicFeatures GenomicRanges glmnet IRanges maftools org_Hs_eg_db pls preprocessCore readxl ridge S4Vectors sva tidyverse TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - oncomsm = derive2 { name="oncomsm"; version="0.1.3"; sha256="0p78sz9r9yl0kndf2p3z40zskam3pr8f22z45ph6dz7hpkh5k0nf"; depends=[BH checkmate dplyr furrr ggplot2 magrittr purrr Rcpp RcppEigen RcppNumerical RcppParallel rlang rstan rstantools StanHeaders stringr tibble tidyr]; }; + oncomsm = derive2 { name="oncomsm"; version="0.1.4"; sha256="1crjpfa7yxcafnhsxs2sbf153lsr9ffaqdxjxp0zkd7hiash0mfm"; depends=[BH checkmate dplyr furrr ggplot2 magrittr purrr Rcpp RcppEigen RcppNumerical RcppParallel rlang rstan rstantools StanHeaders stringr tibble tidyr]; }; oncrawlR = derive2 { name="oncrawlR"; version="0.2.0"; sha256="0cm26diaf3jlzfrpgh13q0hakakmj6vy41wk9z0w81az4jcg9sn9"; depends=[caret DALEX dplyr e1071 formattable fs ggplot2 htmltools jsonlite pdp pROC RCurl readr rjson rlang rlist scales sparkline tidyr webshot xgboost]; }; ondisc = derive2 { name="ondisc"; version="1.0.0"; sha256="071jrldclkaz5lfp3k5fh1ilpgvvcnakh2vvnr69n3pri9dl3fls"; depends=[crayon data_table dplyr magrittr Matrix Rcpp readr rhdf5 Rhdf5lib]; }; oneclust = derive2 { name="oneclust"; version="0.2.3"; sha256="033vpzccj5z56spn2mqpjq9f17vk6ib9y15p2hfqk8rwqkfbvcqs"; depends=[magrittr Rcpp]; }; @@ -13800,12 +13999,12 @@ in with self; { onlineforecast = derive2 { name="onlineforecast"; version="1.0.1"; sha256="0cpwb6bx1qcf05rbi5ycdpgmfb0c5lvhki1c77kzhds5bn3gw5k4"; depends=[digest pbs R6 Rcpp RcppArmadillo]; }; onlineretail = derive2 { name="onlineretail"; version="0.1.2"; sha256="0lid3g4v51c664304cxgjm209qxv88hqglv89frmj4afc0y6k7sc"; depends=[]; }; onls = derive2 { name="onls"; version="0.1-2"; sha256="19pgrhr7xzas4s592l4sgv1dfynf3s3d227zwcdv6z6wrxh40hyj"; depends=[minpack_lm]; }; - onmaRg = derive2 { name="onmaRg"; version="0.2.0"; sha256="0pdzbfkli44cm83q3zfgnd6n9inkgk50nr7jrlwg4zmi3r0f8pdj"; depends=[dplyr httr readxl sf stringr]; }; + onmaRg = derive2 { name="onmaRg"; version="0.2.1"; sha256="1vxmzszi2imwxr237xd67ykzh2r1y65ir9b0xq5hgdkqll2pva9h"; depends=[dplyr httr readxl sf stringr]; }; onnx = derive2 { name="onnx"; version="0.0.3"; sha256="1s0swrcff9v9ffbjkraahmb398gh2jrca2wf5k6gs8037frnl8wd"; depends=[reticulate]; }; onpoint = derive2 { name="onpoint"; version="1.0.4"; sha256="06zdgxcizw66l9ll8g1wsbrj0c4zl8zp2z7l2cn4sz45kr3qkvfg"; depends=[ggplot2 spatstat_explore spatstat_geom spatstat_random]; }; onsr = derive2 { name="onsr"; version="1.0.1"; sha256="0qazwqdbbinsrimn7rf7xcjz5l5zp372i5j54rp87xy098q7c0l3"; depends=[httr jsonlite readr tibble]; }; ontoFAST = derive2 { name="ontoFAST"; version="1.0.0"; sha256="0l3d8bp86849rp0qrs1dfv7bjmrfdqvahb1x656vk69fi20722ma"; depends=[dplyr ontologyIndex pbapply plyr shiny shinydashboard stringr sunburstR usethis visNetwork]; }; - ontologics = derive2 { name="ontologics"; version="0.6.5"; sha256="17nzh45m1mjn70qjcagxqcffg35ll5dh99nrsqn348awzrq5mvzf"; depends=[beepr checkmate dplyr fuzzyjoin httr magrittr purrr rdflib readr rlang stringr tibble tidyr tidyselect]; }; + ontologics = derive2 { name="ontologics"; version="0.7.0"; sha256="1ggdnydxl5xdh8vjjxna778d3c3wvw1rcvvjdcnrllms8i30cvga"; depends=[beepr checkmate dplyr fuzzyjoin httr magrittr purrr rdflib readr rlang stringr tibble tidyr tidyselect]; }; ontologyIndex = derive2 { name="ontologyIndex"; version="2.10"; sha256="0hisb9scxyyqkxhxhvgsgwix54pkq0zma3xq3ywczyazvzcxd5f9"; depends=[]; }; ontologyPlot = derive2 { name="ontologyPlot"; version="1.6"; sha256="0n51x2im134wq3a54wrv02j1pgkpm1qcgb9hd0y6fchz43i039j1"; depends=[ontologyIndex paintmap Rgraphviz]; }; ontologySimilarity = derive2 { name="ontologySimilarity"; version="2.5"; sha256="035z572lbsfcnr9c0hl8gir1kgk0dw8dxzr3v8dqd93k6jr6kaxb"; depends=[ontologyIndex Rcpp]; }; @@ -13813,10 +14012,10 @@ in with self; { oompaBase = derive2 { name="oompaBase"; version="3.2.9"; sha256="1cmw2s5dznmv675484jgvkzgvi6vhg0zbxsq6zhpqsisf672pjhl"; depends=[cluster]; }; oompaData = derive2 { name="oompaData"; version="3.1.3"; sha256="0gdp7bghgpz3q0h06w8r926x7wkpcvkpyf0v5qfi1qixbpvk5fdf"; depends=[]; }; ooplah = derive2 { name="ooplah"; version="0.2.0"; sha256="1p74jh9g62yicrw0lhpbn0diqi2myl24z28kpd2b3mglyffadr0b"; depends=[R6]; }; - oops = derive2 { name="oops"; version="0.2.0"; sha256="0xg69riqphvsqqa953v4mlcakvl0invf29678nrljibg31n4wak5"; depends=[]; }; + oosse = derive2 { name="oosse"; version="1.0.5"; sha256="0xa14c7wxkaj8qww3jsw26x3rwayqvpf7qcsw2xaz80j56ss4w9p"; depends=[BiocParallel Matrix Rdpack]; }; oottest = derive2 { name="oottest"; version="0.9.1"; sha256="1y0k0jcncjkcgfxybs2yyfcc7ywa49jnalrw8mn7m04h58gqg77x"; depends=[]; }; opGMMassessment = derive2 { name="opGMMassessment"; version="0.3.5"; sha256="09ii297524q2bgw2iqvd4s5bhnmm6gm5dh4lxskq1yxynfqdl77r"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; - opa = derive2 { name="opa"; version="0.7.4"; sha256="0jm4c3g0wv3vgq2cjv3s6n3l3a775ws6wc2ppjpr718lv88jw7vf"; depends=[Rcpp]; }; + opa = derive2 { name="opa"; version="0.8.1"; sha256="1dh7lzprcaz0j24npvmx7rr8yn8nlr5dp77zr4mmhwgv6912mv24"; depends=[Rcpp RcppArmadillo]; }; opalr = derive2 { name="opalr"; version="3.3.1"; sha256="194ljy4d7id7q5nif6llh34fxpx6s3x5i3m2grixy3i512apqsm0"; depends=[httr jsonlite labelled mime progress]; }; opdisDownsampling = derive2 { name="opdisDownsampling"; version="0.8.2"; sha256="0laf24x2h6xwhd5wwcwi1iqg5gni29bmlfr86yrvpdrdgr7f4cha"; depends=[benchmarkme caTools doParallel foreach memuse pracma twosamples]; }; openCR = derive2 { name="openCR"; version="2.2.5"; sha256="003xhwskxjh0m9mvp8sdkbjmcb0i0wya1s8d8frnzgsbim2ymi22"; depends=[abind BH MASS nlme plyr Rcpp RcppParallel secr stringr]; }; @@ -13827,11 +14026,10 @@ in with self; { openSTARS = derive2 { name="openSTARS"; version="1.2.3"; sha256="1xpba5bagq16n1k94izshdizqyx99mad1nx2w77ljznmx5qrpqa6"; depends=[data_table progress raster rgdal rgrass7 sp SSN]; }; openSkies = derive2 { name="openSkies"; version="1.1.6"; sha256="03nlbmxp36z82myrbamwl1zngsnfxfw80niisapv53n605p4lrg1"; depends=[cluster dbscan ggmap ggplot2 httr magick R6 ssh xml2]; }; openVA = derive2 { name="openVA"; version="1.1.1"; sha256="1qnp9p25xlphf4ns6p27l0ylk169zi831l5ww2pw4ilw1dvmhk21"; depends=[cli crayon ggplot2 InSilicoVA InterVA4 InterVA5 Tariff]; }; - openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; }; openai = derive2 { name="openai"; version="0.4.1"; sha256="1fi1nc9c7kfnig6b5ifpb1v9r3gxszk984rwyq7i1lb6s5jv0b9z"; depends=[assertthat glue httr jsonlite lifecycle magrittr]; }; - openair = derive2 { name="openair"; version="2.16-0"; sha256="0bb88wy3iln4dn5ybi70g8mdjwpbffwmm1xijr4sd5hamczj0mkk"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr rlang tibble tidyr]; }; + openair = derive2 { name="openair"; version="2.17-0"; sha256="1bvwi6avr25bxxdinh918jqjfvxja8njd069lcabk7fwfm0g675q"; depends=[cli cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr rlang tibble tidyr]; }; openairmaps = derive2 { name="openairmaps"; version="0.8.0"; sha256="18acrnb57cmq7z4sxnyjaa1nc8l52wa9fijgcb30garz8lhlldab"; depends=[cli dplyr forcats ggmap ggplot2 ggtext leaflet lifecycle lubridate magrittr mgcv openair purrr rlang sf stringr tibble tidyr tidyselect]; }; - openalexR = derive2 { name="openalexR"; version="1.0.2.9"; sha256="01a4by6nalzk14hjpqn9d3fa03xnpfpqg9qyda3ar55sbylczm60"; depends=[curl httr jsonlite progress tibble]; }; + openalexR = derive2 { name="openalexR"; version="1.1.0"; sha256="091q82vxp9yacc40ma7fjnraachgl7ricdc605ypiybg5aydd0s1"; depends=[httr jsonlite progress tibble]; }; openbankeR = derive2 { name="openbankeR"; version="0.1.1"; sha256="04jh3nnp53dzbk96dcz0xi67jqmp66mzbj81cy8mhhd2rl5ry9cj"; depends=[dplyr glue httpcode httr jsonlite magrittr tidyr]; }; openblender = derive2 { name="openblender"; version="0.5.81"; sha256="01akixxj04kgrxhv04icrivfpnipnpg9j62i3y19q3jkl9846lh1"; depends=[httr jsonlite]; }; opencage = derive2 { name="opencage"; version="0.2.2"; sha256="1sjkpp6cj6ivd68p6ql6vwgdvy0fwfkjv84wgwgb4i7f4mnxgnff"; depends=[crul dplyr jsonlite lifecycle memoise progress purrr ratelimitr rlang tibble tidyr withr]; }; @@ -13847,7 +14045,7 @@ in with self; { openssl = derive2 { name="openssl"; version="2.0.6"; sha256="1wxkq613054ic0w58a41fyr7bp7f939vhsgj6hbhs3r72qm07wvp"; depends=[askpass]; }; opentripplanner = derive2 { name="opentripplanner"; version="0.5.1"; sha256="04qf01jy675glwnxjf430z43c9hi5dxjv6g2h85ny778hzvhq087"; depends=[checkmate curl data_table geodist googlePolylines progressr purrr RcppSimdJson rjson sf sfheaders]; }; openxlsx = derive2 { name="openxlsx"; version="4.2.5.2"; sha256="0rwvzhk2brhbf1cdpg5jmwiwx5jhr9ybzvnhw0pg4bl3wpkqjw7f"; depends=[Rcpp stringi zip]; }; - openxlsx2 = derive2 { name="openxlsx2"; version="0.6"; sha256="1hr2vmaly7dcjb957mzsyggfn5p8g4d4pdryl8di2zgnnd552nqf"; depends=[magrittr R6 Rcpp stringi zip]; }; + openxlsx2 = derive2 { name="openxlsx2"; version="0.7"; sha256="1c2mmlpki68hpjmgnk941sw13vq99hk89hsx3q3nmqmg82ghbr7g"; depends=[magrittr R6 Rcpp stringi zip]; }; opera = derive2 { name="opera"; version="1.2.0"; sha256="09gh0c74y3n25f9p1rya8ybql5mfaqkcnr8i8wwwzfm67vqdfrnh"; depends=[alabama htmltools htmlwidgets pipeR rAmCharts Rcpp RcppEigen Rdpack]; }; operator_tools = derive2 { name="operator.tools"; version="1.6.3"; sha256="1v4dg7xhz24dnp0zxn815x1405ig64ibii6y40la1gvmzcc41dz5"; depends=[]; }; operators = derive2 { name="operators"; version="0.1-8"; sha256="0zgcv2q46qyqv4dhbd33s4044zjw38w8dqfpzs0c1lxjpkil3dnx"; depends=[]; }; @@ -13860,8 +14058,10 @@ in with self; { optbin = derive2 { name="optbin"; version="1.2"; sha256="08v8dn3jn75p1f04lc963gasyszjf57j7kajwpqv4w20lwjsw17w"; depends=[]; }; optedr = derive2 { name="optedr"; version="2.0.0"; sha256="17r0axfh7yjv5xj9060vi5vysnmi38pz5dsvm0fazfcpzzlxnld7"; depends=[cli crayon dplyr ggplot2 nleqslv purrr rlang shiny]; }; optextras = derive2 { name="optextras"; version="2019-12.4"; sha256="1sqkid6h13h8i8wzri26s828ycwlxlwpwxd85r8bw9h8hs1n602r"; depends=[numDeriv]; }; - optiSel = derive2 { name="optiSel"; version="2.0.6"; sha256="1qd8r0pa3rxrcs1jsj6wmif9nizgw7vg4sak8r5wfr167di8j4im"; depends=[data_table doParallel ECOSolveR foreach kinship2 magic MASS Matrix nadiv optiSolve pedigree plyr pspline purrr quadprog Rcpp RcppArmadillo reshape2 stringr]; }; + optiSel = derive2 { name="optiSel"; version="2.0.7"; sha256="0rqwwc33rb4bp8j3m0lqrv8l539h6bbfhlj4gwa07xsdpvkyq4b5"; depends=[data_table doParallel ECOSolveR foreach kinship2 magic MASS Matrix nadiv optiSolve pedigree plyr pspline purrr quadprog Rcpp RcppArmadillo reshape2 stringr]; }; optiSolve = derive2 { name="optiSolve"; version="1.0"; sha256="0mhl5gdz3y3cs3p6v7z4n50na3sqj0w739gixcf4qgb1ppx0h1xa"; depends=[alabama cccp MASS Matrix nloptr plyr Rcpp shapes stringr]; }; + optic = derive2 { name="optic"; version="1.0.0"; sha256="0qd3h8cf5nzzp066ik9mnls2k7jpfwcf236blz7i666wbj9cpibx"; depends=[did dplyr future_apply lmtest magrittr MASS purrr R6 rlang sandwich tidyr]; }; + optical = derive2 { name="optical"; version="1.7.1"; sha256="1g400s4xbf9c8ss02qhm6q31sv7mrki4a9x1fdjjsyrgmclv9q2s"; depends=[]; }; opticskxi = derive2 { name="opticskxi"; version="0.1"; sha256="1vdz5sgjgyh2nj034w87d2yxcbbg97f1b0vijlwzwjkrfz5knfhl"; depends=[ggplot2 magrittr]; }; opticut = derive2 { name="opticut"; version="0.1-2"; sha256="1j479wa7mlp62c2y7shha1w7ybhfy8wvjfaz27kmwd1f61ma1g0l"; depends=[betareg MASS mefa4 pbapply pscl ResourceSelection]; }; optifunset = derive2 { name="optifunset"; version="1.0"; sha256="18pvdl04ln1i0w30ljdb3k86j27zg2nvrn3ws54c1g6zg9haqhbg"; depends=[]; }; @@ -13892,7 +14092,7 @@ in with self; { optparse = derive2 { name="optparse"; version="1.7.3"; sha256="1v87db7fm494dwxvdsnl1m2kj84nplq7pkh0g41najhx0npy31v2"; depends=[getopt]; }; optpart = derive2 { name="optpart"; version="3.0-3"; sha256="18h659gbgzflq81lcchc058xjgljkmhpsjkh51ylygwrv1qjrz2i"; depends=[cluster labdsv MASS plotrix]; }; optrcdmaeAT = derive2 { name="optrcdmaeAT"; version="1.0.0"; sha256="16g4612mwyfsckn6l71fbrjnnjv4yvnac1cccbrn3k8jh07qgb1h"; depends=[igraph MASS Matrix]; }; - optrefine = derive2 { name="optrefine"; version="1.0.0"; sha256="0s5gwshphjwl02vw22h9dckqix7yw0zzyvasfy594c7d1qw46y4p"; depends=[ggplot2 MASS Rglpk sampling]; }; + optrefine = derive2 { name="optrefine"; version="1.1.0"; sha256="1ijahjraiaax0xyr1y4s3aq1b4xk8h7ablrvy2m2fr879q3xfi9i"; depends=[ggplot2 MASS Rglpk sampling]; }; optweight = derive2 { name="optweight"; version="0.2.5"; sha256="1mfk9sp47flqq7i762wip5191j8m0q9kbyxs4a7f0pd76qwf67q2"; depends=[ggplot2 Matrix osqp]; }; opusminer = derive2 { name="opusminer"; version="0.1-1"; sha256="1vw6pbk1iiaxmfws95wmwf56p3afk10s5c3x9f0lliamckpyzkck"; depends=[arules Matrix Rcpp]; }; ora = derive2 { name="ora"; version="2.0-1"; sha256="0albxqma220rnrpfdq3z9cawr83q1a0zzczbbcy4nijjm4mswphy"; depends=[DBI ROracle]; }; @@ -13916,6 +14116,7 @@ in with self; { ordinalNet = derive2 { name="ordinalNet"; version="2.12"; sha256="0ijgxp1lh4hbgks0p5041f5s6kpfrlm6f7hdz2nm3dn1rhq6bwvi"; depends=[]; }; ordinalRR = derive2 { name="ordinalRR"; version="1.1"; sha256="1sfkq8gryyls22208ympw5scgb4jkd27pyc1qklw4x7cz9wfnfbp"; depends=[rjags]; }; ordinalbayes = derive2 { name="ordinalbayes"; version="0.1.1"; sha256="13f9rv6gndjr18rfk60rmginzam1xjsssjn45l6hhl6y3gglsyzh"; depends=[coda dclone DESeq2 devtools runjags SummarizedExperiment]; }; + ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.8"; sha256="0c97c3zss34x9n8szr95z51qx8ix55mlrbqvg8dz128xpd3684rj"; depends=[survival]; }; ordr = derive2 { name="ordr"; version="0.1.1"; sha256="07nsl6mdm4dmyl8vsqzcpd2mihcxsm68gjx3v1dfqgjqmz477nvf"; depends=[dplyr generics ggplot2 ggrepel labeling magrittr purrr rlang scales stringr tibble tidyr tidyselect]; }; ore = derive2 { name="ore"; version="1.7.3.1"; sha256="0hlmr4p0ldizdv46myyhlki10qkjdgs44jxp9y61zqcdw360dz95"; depends=[]; }; oreo = derive2 { name="oreo"; version="1.0"; sha256="1qzv6fjana5fx45msqasqfniiancsch6j8r1llh1xyg2wjhqdj23"; depends=[fftwtools ggplot2 gridExtra openxlsx pracma scales spectral]; }; @@ -13928,16 +14129,16 @@ in with self; { orientlib = derive2 { name="orientlib"; version="0.10.5"; sha256="05xwx040l1ln06rkmsg8l4394b3inaf663mw4fng54wwacgv9jfj"; depends=[]; }; origami = derive2 { name="origami"; version="1.0.7"; sha256="0b66alm1mr6vsgj5cgliqxw8vpm1x504qs42crlf0n6339a38h5l"; depends=[abind assertthat data_table future future_apply listenv]; }; origin = derive2 { name="origin"; version="1.1.0"; sha256="132ccdh40rz2rxabqjfjrmhpjrm5b5hm9zfqm3qwssgligf30vg3"; depends=[cli rstudioapi]; }; - orloca = derive2 { name="orloca"; version="4.10"; sha256="113y76gyhslpfyq7n1nnbgnxhxgr213f28vnc3n3b9pghkkr0p4z"; depends=[knitr png rmarkdown ucminf]; }; + orloca = derive2 { name="orloca"; version="5.3"; sha256="09xsas6qpv00p63n17yd95p88v4rcwwmp187n3y3p0nx9q3y3vrf"; depends=[knitr png rmarkdown ucminf]; }; orloca_es = derive2 { name="orloca.es"; version="4.9"; sha256="00zb08dqcsh1ljl4f2djm1pwbrfbaddgapn3v8nascmwxlhb2hkw"; depends=[orloca]; }; ormBigData = derive2 { name="ormBigData"; version="0.0.1"; sha256="1rq202k4assmij21bjjk1ba7121p5p3rp21k548cc6lk81xj1rcc"; depends=[benchmarkme doParallel foreach Hmisc iterators rms SparseM]; }; - ormPlot = derive2 { name="ormPlot"; version="0.3.4"; sha256="1s38alb602javkizxp3gqkmsq6zvl983gv4bcgd8752fvvddbf4s"; depends=[ggplot2 gtable rms]; }; + ormPlot = derive2 { name="ormPlot"; version="0.3.5"; sha256="1q9jhg1r815llrz12gdxmdqb4x11kk3ph3pp41da72969hsiw73l"; depends=[ggplot2 gtable rms]; }; oro_dicom = derive2 { name="oro.dicom"; version="0.5.3"; sha256="1ar70xk2bqk7jgckfivgp4np3dxaynmgdg41n8x0sg9cpxl2lc38"; depends=[oro_nifti]; }; oro_nifti = derive2 { name="oro.nifti"; version="0.11.4"; sha256="01mn90qxb7i15zr83xrl2cn4akayfzpm83r5x71zczz3qb9gbr7g"; depends=[abind bitops RNifti]; }; oro_pet = derive2 { name="oro.pet"; version="0.2.7"; sha256="0drk4mlacg443y5qljyp5jrq3lcr08qmsxnr8mgp93cxrdlwvr1i"; depends=[minpack_lm msm oro_dicom oro_nifti]; }; orsifronts = derive2 { name="orsifronts"; version="0.2.0"; sha256="0nxhijiqhhrxwrm5fy619lsdqyji43xyfqg4309pfb7da4377i3q"; depends=[sp]; }; orsk = derive2 { name="orsk"; version="1.0-7"; sha256="0kdy8d9idnhhjhviriq22pyj543zrw83yc9qb1h190lspizdd2bs"; depends=[BB BHH2]; }; - orthoDr = derive2 { name="orthoDr"; version="0.6.5"; sha256="0pnxm65k8c6hggixbyip0hyxkk29sqbpy933ivkmksnwg3ckzr8k"; depends=[dr MASS plot3D pracma Rcpp RcppArmadillo rgl survival]; }; + orthoDr = derive2 { name="orthoDr"; version="0.6.7"; sha256="0nrrwqpjm5dp487kql0nv9gaarar3dw1fwwmjd1ib3ya9l7m77xq"; depends=[dr MASS plot3D pracma Rcpp RcppArmadillo rgl survival]; }; orthogonalsplinebasis = derive2 { name="orthogonalsplinebasis"; version="0.1.7"; sha256="0wdqyijvwf9fdg22s6ck22bjk3xc30snlx29sxvm15yiz3rj498v"; depends=[]; }; orthopolynom = derive2 { name="orthopolynom"; version="1.0-6.1"; sha256="1ig2pyyibbynwmhapbicij5g47acnz8npjm46xnjybskcv96wjpc"; depends=[polynom]; }; osDesign = derive2 { name="osDesign"; version="1.8"; sha256="0l5dq8rj4rg4v324610kj2j5nv7py6z1jcplhb6br1gvldj7ng1d"; depends=[]; }; @@ -13946,13 +14147,12 @@ in with self; { osd = derive2 { name="osd"; version="0.1"; sha256="1py9p15nrcydr8w9ilxkxabiz9zlqnls8xn9avjkxd8x6602jx6p"; depends=[JADE nnls]; }; osfr = derive2 { name="osfr"; version="0.2.9"; sha256="0gbkg6hlip2bkwifsgvnaimrmi1pamaxf8xv7g0yxw5wdf8zyy5c"; depends=[crul fs httr jsonlite memoise purrr rlang stringi tibble]; }; oshka = derive2 { name="oshka"; version="0.1.2"; sha256="02hglpq5lknq93zbcf219lhnhppzgygkhxqixb15f89rxf9fczgs"; depends=[]; }; - oskeyring = derive2 { name="oskeyring"; version="0.1.5"; sha256="10ajmkw8sfcafs77flg0050s8vf88lq56rv2dxk9gv4pkvg8z498"; depends=[]; }; - osmdata = derive2 { name="osmdata"; version="0.2.1"; sha256="1vi44cb05wl4wnbfwvr7wrj261211jk0pf6z9ila1s23ja8lkf0a"; depends=[curl httr2 lubridate magrittr Rcpp reproj rvest tibble xml2]; }; + oskeyring = derive2 { name="oskeyring"; version="0.1.6"; sha256="1fsgz4jln3nk53bxpmjpc7dcapc9j1wdqlrab169ymvrlzypgvqc"; depends=[]; }; + osmdata = derive2 { name="osmdata"; version="0.2.2"; sha256="14zszyaa1ny5q8kq96ayll94kals5gh7b8hv3fagx2cbxr5xsqih"; depends=[curl httr2 lubridate magrittr Rcpp reproj rvest tibble xml2]; }; osmextract = derive2 { name="osmextract"; version="0.4.1"; sha256="03bxdkykp081q3d9n14y0qp31vnllc4rzp2ldzs4s572xfcjd1hb"; depends=[httr jsonlite sf]; }; osqp = derive2 { name="osqp"; version="0.6.0.8"; sha256="15zd0byk8vy899hm7kd0hpx84hnr84ynai29mr7frraamr2l00ql"; depends=[Matrix R6 Rcpp]; }; osrm = derive2 { name="osrm"; version="4.1.1"; sha256="05zvsmgrfg8143cma3xr2c758a7lbabsb53sxzw5xkc7z19amfyb"; depends=[curl googlePolylines mapiso RcppSimdJson sf]; }; osrmr = derive2 { name="osrmr"; version="0.1.36"; sha256="1vnf6g1d9fjckz9ay910nb9gr1km2adwk3b0k460mxvpr36izkh7"; depends=[assertthat bitops R_utils rjson stringr]; }; - ot = derive2 { name="ot"; version="0.2.0"; sha256="0lym92hsxhfjdkh738rxlpkq084454055vgxm2b4wdhqw00jwf5y"; depends=[]; }; otinference = derive2 { name="otinference"; version="0.1.0"; sha256="1l75jjnkyk8yzaw9zyk45jq9ys304i6pzm2xd5apxrb1jk75a3li"; depends=[MASS Rglpk sm transport]; }; otp = derive2 { name="otp"; version="0.1.0"; sha256="0l0r56kn8jmjxhzz646fimi91blpgpynrrgfd03rh3dbifd5xhdz"; depends=[base64url openssl R6]; }; otpr = derive2 { name="otpr"; version="0.5.1"; sha256="1wh5rmwwwdf1wkb18ayx6zcnhwf80zziznk64jg1974g8crgdxsb"; depends=[checkmate dplyr geojsonsf httr janitor jsonlite rlang rrapply sf urltools]; }; @@ -13961,10 +14161,10 @@ in with self; { otsad = derive2 { name="otsad"; version="0.2.0"; sha256="1jb6raxm70aywbgs7bdyw8vccy1nj924f4hkpjrlgnvzmy0hyhvs"; depends=[ggplot2 plotly reticulate sigmoid]; }; otsfeatures = derive2 { name="otsfeatures"; version="1.0.0"; sha256="1akny7bdls9ddvkpm906ih9h7bc5sgnj03z7kkzbpy703d1y6krr"; depends=[astsa Bolstad2 ggplot2 latex2exp Rdpack]; }; ottr = derive2 { name="ottr"; version="1.3.1"; sha256="03iqvslgf2njyyvk1icqr1bn8xhc0fpx92gkc1g8gir2hja7qzps"; depends=[jsonlite R6 testthat zip]; }; - ottrpal = derive2 { name="ottrpal"; version="1.0.1"; sha256="02y917r48mqkga27f8019cdbx4mh45dr8l9s2ai1anxgvccnb4yi"; depends=[bookdown curl dplyr fs glue httr knitr magrittr purrr R_utils readr rmarkdown rprojroot rvest stringr xml2 yaml]; }; + ottrpal = derive2 { name="ottrpal"; version="1.1.1"; sha256="07nn49h8a7ag4kk7dibh3idhg5sf0xg3qxbczb8d9hvxssia6h8x"; depends=[bookdown curl dplyr fs glue httr knitr magrittr purrr R_utils readr rmarkdown rprojroot rvest stringr xml2 yaml]; }; otuSummary = derive2 { name="otuSummary"; version="0.1.1"; sha256="04l667qmp7wqkbdsk87j92gf89s13090kzs8cjlmxsp6i69r34z2"; depends=[reshape2 vegan]; }; - ouch = derive2 { name="ouch"; version="2.18"; sha256="119s9llpjy0b4q830xig2xr66fq6izp6mr2k4k79ggmf3gxww8as"; depends=[subplex]; }; - outForest = derive2 { name="outForest"; version="0.1.3"; sha256="08lr2bb55hafm14jwv4m90qc0mn3a2887whfzw955crixwp2as5k"; depends=[FNN missRanger ranger]; }; + ouch = derive2 { name="ouch"; version="2.19"; sha256="15ryd76max77zwjlbijj4v7h42mscr4zqg8b01cq3gsr51l8bwkf"; depends=[subplex]; }; + outForest = derive2 { name="outForest"; version="1.0.1"; sha256="03m3jfbydagv4skpijz1xjhsydfb0ci2n0qz4zigfys6hxhfzg36"; depends=[FNN missRanger ranger]; }; outbreaker2 = derive2 { name="outbreaker2"; version="1.1.3"; sha256="06wlmf51ciy7zy5nchfn2myvkwrvq44cnzzjl75vz32ixn8iy56v"; depends=[ape ggplot2 magrittr Rcpp visNetwork]; }; outbreaks = derive2 { name="outbreaks"; version="1.9.0"; sha256="0x6r4rzcvd1rp8j4brq9c0zl2xsl5jfi18dny20an7aqk310p11v"; depends=[]; }; outcomerate = derive2 { name="outcomerate"; version="1.0.1"; sha256="07mwml7r98qjgvrp938sqf7klyspz110583j0zwb72j69n4whmrj"; depends=[Rdpack]; }; @@ -13976,14 +14176,14 @@ in with self; { overdisp = derive2 { name="overdisp"; version="0.1.1"; sha256="0gncmirpiqyxsgpsdrv875i6a9bagpz76vcbqxsaql537m1fd99r"; depends=[]; }; overlap = derive2 { name="overlap"; version="0.3.4"; sha256="1arxprhz035ab78ks88n6scwnlwmnb97mlac5gsx90ipb6gkgcyk"; depends=[]; }; overlapping = derive2 { name="overlapping"; version="2.1"; sha256="1dq2xsinl5rh8sf2bayv6xs7x8i0d54c405p8l82ji3xrkz49clf"; depends=[ggplot2 testthat]; }; - overlapptest = derive2 { name="overlapptest"; version="1.2-4"; sha256="148vswcvy0anw6xrpfsskjn0i7jkn0jbfqlaf4bb13pkini2bahf"; depends=[spatstat_geom]; }; + overlapptest = derive2 { name="overlapptest"; version="1.3"; sha256="0qvsiwh76isiz3rcrizahp6p35lscrjijidnjwwwpmc0r9pm7xzd"; depends=[spatstat_geom]; }; overture = derive2 { name="overture"; version="0.4-0"; sha256="1s16x5kn0apb0w1f7hqzcsqvw3x621y5n6yr1qn7yb7431pdw3cz"; depends=[bigmemory]; }; overviewR = derive2 { name="overviewR"; version="0.0.13"; sha256="13g2qjd9421nfmabhs2xx8h393id9c9x1h547r953q7aabjmkr89"; depends=[data_table dplyr ggplot2 ggrepel ggvenn rlang tibble tidyr]; }; owd = derive2 { name="owd"; version="1.0.6"; sha256="08f1zzlnkfdzm5rlw14qm6yvn68j2yas21zjsy31pc59rh3lzkyh"; depends=[]; }; owdbr = derive2 { name="owdbr"; version="1.0.1.1"; sha256="0q4654zr5aw04sssy7127vafry72b7p3d8i44fqvqg3055awin0i"; depends=[data_table dplyr httr jsonlite magrittr tibble]; }; owidR = derive2 { name="owidR"; version="1.4.1"; sha256="0m0nzm3582p996hjs951vmssvhc35dwiw8520b61qs05bxfiiwkj"; depends=[curl dplyr forcats ggplot2 ggrepel htmltools httr jsonlite leaflet lifecycle magrittr purrr readr rlang rvest scales sf stringr xml2]; }; owmr = derive2 { name="owmr"; version="0.8.2"; sha256="0qlb5aw6n06yf8y2gd2fjp8kp3w0xgqh3fka7rxqndgvaqmin1a6"; depends=[httr jsonlite magrittr plyr tibble tidyr]; }; - ows4R = derive2 { name="ows4R"; version="0.3-4"; sha256="1mfs9ag47wyspwq5rl5mqx7ilrxglrsc26l7zz8xbb5bdl5dkd7c"; depends=[geometa httr keyring openssl R6 sf terra XML]; }; + ows4R = derive2 { name="ows4R"; version="0.3-5"; sha256="171amkkjjwf89n80dh2ixnvn0xxf1b64b7qhw1i4ch292jqnwmj0"; depends=[geometa httr keyring openssl R6 sf terra XML]; }; ox = derive2 { name="ox"; version="0.1.0"; sha256="0j0va301bmppvmk6paqaqqaw85h8yf92i3pz7i59f2j8q9im82rx"; depends=[]; }; oxcAAR = derive2 { name="oxcAAR"; version="1.1.1"; sha256="1szifw978qr7v8n178jhg4ap2jwvfnwjl2izbbiydwx8q1fyj2q4"; depends=[jsonlite stringi stringr]; }; oysteR = derive2 { name="oysteR"; version="0.1.1"; sha256="11zg959h9104hh8wid4003s8c4z9xhmicj39cc5vq1j8g1g7ilr7"; depends=[cli dplyr glue httr jsonlite purrr rjson rlang stringr tibble tidyr yaml]; }; @@ -13996,14 +14196,14 @@ in with self; { pCODE = derive2 { name="pCODE"; version="0.9.4"; sha256="17igf35324r0dkjff7m4v9zlhsbpw4k1idvgswq3mvv449jvybsa"; depends=[deSolve fda MASS pracma]; }; pCalibrate = derive2 { name="pCalibrate"; version="0.2-1"; sha256="0gi4hjnykn4gbj9krmw4z1qy4lbxkvacczkks3zkwalw9ylwkpxl"; depends=[exact2x2 MCMCpack]; }; pGMGM = derive2 { name="pGMGM"; version="1.0"; sha256="1hkczz38g8a8253jm8vhm8948fs91g6b2rfzkz47srkkby9ksa4x"; depends=[JGL MASS mvtnorm]; }; - pGPx = derive2 { name="pGPx"; version="0.1.2"; sha256="19hma2zm0gjwmam4r7zg1ayya6ab390idprpjhd3l0ld1y4zn606"; depends=[DiceKriging KrigInv pbivnorm pracma randtoolbox Rcpp RcppArmadillo rgenoud]; }; + pGPx = derive2 { name="pGPx"; version="0.1.3"; sha256="1bv8fxy2rhb36201h4r4wx8gd5dsjw597n666mnk51r64wfmj62x"; depends=[DiceKriging KrigInv pbivnorm pracma randtoolbox Rcpp RcppArmadillo rgenoud]; }; pGRN = derive2 { name="pGRN"; version="0.3.5"; sha256="1sy5nhwcn516q4pjlg96qqaqvs1ig7ixz4r54n9njkf5z92wnhfw"; depends=[bigmemory doParallel dtw foreach future ggplot2 ggraph igraph lmtest proxy tidygraph visNetwork]; }; pKSEA = derive2 { name="pKSEA"; version="0.0.1"; sha256="1k9javxbhx28hf5k3i66ggqwlws2w9qwp01g8f7jmyp92pxr3qqd"; depends=[]; }; pRF = derive2 { name="pRF"; version="1.2"; sha256="17srabk7mam16rdzc5g9ggdrhjjk8wibny40gxvgzkv7qgq7m80x"; depends=[dplyr ggplot2 multtest permute randomForest reshape2]; }; - pROC = derive2 { name="pROC"; version="1.18.0"; sha256="1abvbzdss12n64pp9vlgnn0q3abh0nj4n0a8cinwwvhphjrm9vym"; depends=[plyr Rcpp]; }; + pROC = derive2 { name="pROC"; version="1.18.2"; sha256="01q5qv2g2npfn7xyd62mhfvdb0647r3y1j4sm0fb7p9ncyifm0hz"; depends=[plyr Rcpp]; }; pRSR = derive2 { name="pRSR"; version="3.1.1"; sha256="1irx95b7cwvx3gpn9brjjn4k947m8frz542r18nilc9f1159mb3s"; depends=[]; }; - pRecipe = derive2 { name="pRecipe"; version="1.0.0"; sha256="0vwyb6mlb2qv1dqkmywl0r8zwckqxs2q6mdmk6kj5giwxysb1hbk"; depends=[data_table ggplot2 ggpubr ncdf4 openair R_utils raster scales sf]; }; - pRepDesigns = derive2 { name="pRepDesigns"; version="1.0.0"; sha256="189jmh78vcr174lf0s283pbhknr87h3bq02gvvpg5r2hv31gdgjl"; depends=[]; }; + pRecipe = derive2 { name="pRecipe"; version="2.4.0"; sha256="02dya9iica049sgwlb2hal4vgkch8y309v9kvgirk4j7aww5dslp"; depends=[data_table ggplot2 ggpubr ncdf4 openair R_utils raster scales sf]; }; + pRepDesigns = derive2 { name="pRepDesigns"; version="1.1.0"; sha256="1bsdgd6zaywr5bh96khjinp5qrv72ibv9y60v63rqzpkdixdzp5z"; depends=[]; }; pTITAN2 = derive2 { name="pTITAN2"; version="1.0.2"; sha256="1mwx7k8ql4l572xvwb5gns9n4kqk779wwm4sg7nbgzz8xvcdh665"; depends=[data_table]; }; pa = derive2 { name="pa"; version="1.2-2"; sha256="0w76m169qghm8r3z319jv901ri136c9maa5j0r9kbgpdnq25v53w"; depends=[ggplot2]; }; pack = derive2 { name="pack"; version="0.1-1"; sha256="0x4p8clwp49s2y67y7in530xwhjngnqwagf9xnyb1jp0z3myd3r7"; depends=[]; }; @@ -14036,11 +14236,11 @@ in with self; { paintingr = derive2 { name="paintingr"; version="0.1.0"; sha256="0km21rv6f137nngx4nzamplzgzhfgijlh1skfvvkp0cbjxv17cpi"; depends=[]; }; paintmap = derive2 { name="paintmap"; version="1.0"; sha256="1qw5725yjymxmfhffqjx4lbmzj437c7qwr8xrzmf52f0m28nl3vk"; depends=[]; }; pairsD3 = derive2 { name="pairsD3"; version="0.1.3"; sha256="1w1i9d5pls07zs95ikfzmdm3dr6yw3dy6k1rbkhfqb5g2y9g82zr"; depends=[htmlwidgets shiny]; }; - pairwise = derive2 { name="pairwise"; version="0.6.0-0"; sha256="0mcd5lm6yk1hd1r1ffs0l3gj85bamnjw77i6lh4973lggs0zxzdc"; depends=[]; }; + pairwise = derive2 { name="pairwise"; version="0.6.1-0"; sha256="03dvpyr0hdz5a4wdim791m69825q762pwahlv3vwlnqas7niw3mf"; depends=[]; }; pairwiseCI = derive2 { name="pairwiseCI"; version="0.1-27"; sha256="0yp9nibdrsddjqq6vdlfbpvmfgm209h99b6qqqd6wgfzng327822"; depends=[boot coin MASS MCPAN mcprofile]; }; - pak = derive2 { name="pak"; version="0.4.0"; sha256="1jlcfnx0gqvslc8idqh2p7z6h1r5vqz7vyzfpk4gl1rnlg26q894"; depends=[]; }; + pak = derive2 { name="pak"; version="0.5.1"; sha256="00kn409bgpjbv1dixbaq0m0bfqpdvbq18l3ccqa1wjxph4z88l1h"; depends=[]; }; palaeoSig = derive2 { name="palaeoSig"; version="2.1-3"; sha256="121akb42lqzp2vvfj6kjlaxsivxd71r7vnwyg6pcymkin94r8c3k"; depends=[assertr dplyr forcats ggplot2 ggrepel magrittr MASS mgcv purrr rioja rlang TeachingDemos tibble tidyr vegan]; }; - palaeoverse = derive2 { name="palaeoverse"; version="1.1.1"; sha256="010h6j6riq4hfzxj7jc54hkgj08mq316f2phq4pzpp7lq820mn9r"; depends=[ape curl deeptime geosphere h3jsr httr pbapply sf stringdist]; }; + palaeoverse = derive2 { name="palaeoverse"; version="1.2.0"; sha256="02cfj7v88gk984an23dh63apc2a57362fm7j1y8vvy87kjz58m15"; depends=[ape curl geosphere h3jsr httr pbapply sf stringdist]; }; palasso = derive2 { name="palasso"; version="0.0.8"; sha256="0cgxfzhp394c8xprc2k0qx9c274bbp0cpazk7xilfrgcgk08156i"; depends=[glmnet Matrix survival]; }; pald = derive2 { name="pald"; version="0.0.2"; sha256="0xix3sf6zqpl10asad7lhqp6yk9v8kz81pqmxbwb85in5lngz5nr"; depends=[glue igraph]; }; paleoTS = derive2 { name="paleoTS"; version="0.5.3"; sha256="1hpgyjnviw9gzy21rsa4vqkiyfpim5y70yrbjyq5z3ifanszggi5"; depends=[doParallel foreach mnormt]; }; @@ -14054,7 +14254,7 @@ in with self; { palettes = derive2 { name="palettes"; version="0.1.1"; sha256="1ahang7c5g4n7wyk6g8abhimzm95281wgyn8wgvs4vmy2was3zgh"; depends=[cli farver ggplot2 pillar prismatic purrr rlang scales tibble vctrs]; }; palettesForR = derive2 { name="palettesForR"; version="0.1.2"; sha256="0nkb0dszj3a9ba7w6kfyn8lxacqsjw60i87p3g2gyl098kjwv7qv"; depends=[]; }; palettetown = derive2 { name="palettetown"; version="0.1.1"; sha256="1kjj1sqib1ns7895plp8c7h317pxwbyxi2shjkcgadkcsv2yjsxn"; depends=[]; }; - palinsol = derive2 { name="palinsol"; version="0.93"; sha256="0k29sl2j7yf4yc0dhb047rxwg9np9l6pdwv6wyb4j80yc07vc9am"; depends=[gsl]; }; + palinsol = derive2 { name="palinsol"; version="1.0"; sha256="1xxpi81gf8wb2a3a42akvibrk8319h4x13k19zxjg02qyrq9gsfx"; depends=[]; }; palm = derive2 { name="palm"; version="1.1.4"; sha256="1h323py9dgdymih9j2wk4r1kib767z7z84h2c3albxxf9b2hvq4f"; depends=[gsl minqa mvtnorm R6 Rcpp]; }; palmerpenguins = derive2 { name="palmerpenguins"; version="0.1.1"; sha256="1d1h3bfx750is4qqj4w00rcigk9rrdy69bvd5bgqz5y7ls5x8h1a"; depends=[]; }; palmid = derive2 { name="palmid"; version="0.0.3"; sha256="0bh0p7alcbqkingxbg8gai7bch2cv8q90sfw92y7vj857nl09fh7"; depends=[DBI dbplyr downloadthis dplyr DT ggExtra ggplot2 ggplotify ggwordcloud gridExtra htmltools htmlwidgets leaflet plotly rmarkdown RPostgreSQL scales viridisLite]; }; @@ -14074,28 +14274,29 @@ in with self; { panelView = derive2 { name="panelView"; version="1.1.16"; sha256="07wmjh0ha7ry8nf5vas50kixljshg7c1wkr8nq992a56dz9l5igq"; depends=[dplyr ggplot2 gridExtra]; }; panelWranglR = derive2 { name="panelWranglR"; version="1.2.13"; sha256="0zj0m08518zi6xsa7qik61ys1qqa2lqiar4l7acclkw58w5zrmbc"; depends=[caret data_table Hmisc]; }; panelaggregation = derive2 { name="panelaggregation"; version="0.1.1"; sha256="0x8ldqb9216pclfvs4ymdpian43v2ydkyflpf0k6lcn35r04xfr6"; depends=[data_table]; }; + panelhetero = derive2 { name="panelhetero"; version="1.0.1"; sha256="12csjgcjxwl7fxlqib0vgywf32frd7jri3dj9lyq5fmz9riqkdix"; depends=[boot ggplot2 KernSmooth Rearrangement]; }; panelr = derive2 { name="panelr"; version="0.7.7"; sha256="0w3kzh2r6qshh1dmjafd5q92x26rc027mcm0vk570l4l39w05fpq"; depends=[crayon dplyr Formula ggplot2 jtools lme4 lmerTest magrittr purrr rlang stringr tibble tidyr]; }; panelsummary = derive2 { name="panelsummary"; version="0.1.1"; sha256="15hx8wa9vh4p3n2pwag424hz1pxqrhcl9zr7ppza4gblrg6vxvxv"; depends=[dplyr fixest kableExtra modelsummary rlang stringr tidyselect]; }; panelvar = derive2 { name="panelvar"; version="0.5.5"; sha256="15bks8aqy29rslgbjp4w8xw7w2mcpgcc77bya7a9jcs5715j9xdb"; depends=[ggplot2 knitr MASS Matrix matrixcalc progress reshape2 texreg]; }; pangaear = derive2 { name="pangaear"; version="1.1.0"; sha256="1x1dbf7jahzc5s4gs0hn6xpw35xxbgp61aym50k384pavsdm9xgw"; depends=[crul hoardr jsonlite oai png tibble xml2]; }; - panstarrs = derive2 { name="panstarrs"; version="0.1.0"; sha256="0a5b9mzqnvcf0xrd814gnf2nd8incclx214x1k0c3x2zpqbf9p02"; depends=[attempt dplyr glue httr jsonlite magrittr purrr RCurl readr rlang stringr]; }; + panstarrs = derive2 { name="panstarrs"; version="0.2.0"; sha256="0pnzbw1m1vgy40f7m2wbym9rgdvaa2i9fqkadfnpj4z428b50627"; depends=[bit64 checkmate curl data_table httr jsonlite]; }; papaja = derive2 { name="papaja"; version="0.1.1"; sha256="1pvknpvfns1r5bwadm58n4xjrlwgqfyhz9diy72zabbksxddqa26"; depends=[bookdown broom glue knitr rmarkdown rmdfiltr tinylabels yaml zip]; }; papci = derive2 { name="papci"; version="0.1.0"; sha256="0ma1pfwgmj6qcg23yzhbnqip4qnxhsmfnvrgrr3ln65q5plmvh58"; depends=[binom dplyr DT Hmisc PropCIs ratesci readxl shiny shinythemes tidyverse]; }; papeR = derive2 { name="papeR"; version="1.0-5"; sha256="095qfgv6h3sl5p69gm1v0qh9axap8gq2a9a3v95688fia2ppym4x"; depends=[car gmodels xtable]; }; paperplanes = derive2 { name="paperplanes"; version="0.0.1.9"; sha256="1d9grc95xqxn91lvk8v7w3z90bhl8savkhihwshyjp8ij2xpzfkl"; depends=[]; }; - parSim = derive2 { name="parSim"; version="0.1.4"; sha256="0iswcw52skx1hxb9bv9ihhwwyybprsk2615pmijsxp0bkzgsjc88"; depends=[dplyr pbapply snow]; }; - parabar = derive2 { name="parabar"; version="0.10.1"; sha256="0af0y21clvhx9lv121nncq3ckpvmfiamm3fy5k9h4dygpc0w9m29"; depends=[callr filelock progress R6]; }; + parSim = derive2 { name="parSim"; version="0.1.5"; sha256="0gcycp0gcgz2a1w7nzrlwq41wvyg36931c9q4zjyq876nd43ah12"; depends=[data_table dplyr pbapply snow]; }; + parabar = derive2 { name="parabar"; version="1.1.0"; sha256="19zzp6d86plyy7clwhq8yp40b38niy3bnk7da39xblp01wbc3sak"; depends=[callr filelock progress R6]; }; parade = derive2 { name="parade"; version="0.1"; sha256="07x02j9jlldz4p0cyhw292041l3pziv56bhbzp4f0qpxhcbn5zn4"; depends=[]; }; paradox = derive2 { name="paradox"; version="0.11.1"; sha256="0igza40ycirnf5chs7z2nnh0w6d48v4wv102zn2vnvh0kkvgv3hd"; depends=[backports checkmate data_table mlr3misc R6]; }; parallelDist = derive2 { name="parallelDist"; version="0.2.6"; sha256="01ly4hxwa64a0ya5gla8rvv72s9mcknsfznivjkh937pbjwb7iih"; depends=[Rcpp RcppArmadillo RcppParallel]; }; parallelMCMCcombine = derive2 { name="parallelMCMCcombine"; version="2.0"; sha256="18xw0s9lga2w981cx4daywp6b6gxvgl9mh68r13c5mmhis3b8v14"; depends=[mvtnorm]; }; parallelML = derive2 { name="parallelML"; version="1.2"; sha256="05j0rb81i8342m8drwgmgi1w30q96yf501d83cdq4zhjbchphbl1"; depends=[doParallel foreach]; }; parallelMap = derive2 { name="parallelMap"; version="1.5.1"; sha256="1qg7zpz5sd9jp8wzjqahkhipwj1jn192llwg06q4gv9mlcsac261"; depends=[BBmisc checkmate]; }; - parallelPlot = derive2 { name="parallelPlot"; version="0.2.0"; sha256="04yr9fbvf3w0pw899zvk9ljjhsz775aiyhspm0bvaqaxzv8fkgx3"; depends=[htmlwidgets]; }; - parallelly = derive2 { name="parallelly"; version="1.35.0"; sha256="1kaxmmkwjxnympxsyphwfdba6nmp4jszhrsy5h2snshr0xjrnpiz"; depends=[]; }; + parallelPlot = derive2 { name="parallelPlot"; version="0.3.1"; sha256="12rpzcz1nc8c9rnsdg7kx6gh98plhp2jv22h58gg5gyl0pcsh2hx"; depends=[htmlwidgets]; }; + parallelly = derive2 { name="parallelly"; version="1.36.0"; sha256="123w89hmd7fn7lmdsl044npidvf7472h1ascvf7swjllan8s5h5r"; depends=[]; }; parallelpam = derive2 { name="parallelpam"; version="1.0.1"; sha256="04r4ccgq99damfvh1arzn83ggl6m9xkkz4b0z3zdd8y3p6hvk3x2"; depends=[memuse Rcpp]; }; paramGUI = derive2 { name="paramGUI"; version="2.2.0"; sha256="16z7fbrykyfysiqfrj00ks567wwrz2mpcwx75crbg45spdw0dck6"; depends=[fields shiny shinydashboard TIMP]; }; - parameters = derive2 { name="parameters"; version="0.20.3"; sha256="1ciqcw5pqk01knznnsvj95gss5yx73vaqw9kinph8symvslcmpdk"; depends=[bayestestR datawizard insight]; }; + parameters = derive2 { name="parameters"; version="0.21.1"; sha256="1vdk80q76srk1qg74xyggkc54a4s9p90v1n94b04wzyxp7sdd9kh"; depends=[bayestestR datawizard insight]; }; paramhetero = derive2 { name="paramhetero"; version="1.0.0"; sha256="1zkwzmh3igkwfq87v3rmp3axfspl20qn4qmpyqql6ain564yyabw"; depends=[ggplot2 MASS]; }; paramlink = derive2 { name="paramlink"; version="1.1-5"; sha256="0a21cy8q3zv96zdq5q2hfkb2ga1fham00in7wfyyd9wpck9gp009"; depends=[assertthat kinship2 maxLik]; }; paramlink2 = derive2 { name="paramlink2"; version="1.0.4"; sha256="1dw6z49yd7g89hmnzpb5m0w8fz56iwwf7zr01kji0ss9p9vnr9pg"; depends=[pedprobr pedtools]; }; @@ -14110,15 +14311,14 @@ in with self; { parma = derive2 { name="parma"; version="1.7"; sha256="0rv53d3ailqh5a0qarpw9967ghnvslr2kcn02yn8xbkpcvnb7lfk"; depends=[corpcor nloptr quadprog Rglpk slam truncnorm]; }; parmigene = derive2 { name="parmigene"; version="1.1.0"; sha256="067rqxqyzy1fsjj0s1g7af4527whwdhzjzc5b8a8n7683na59ns4"; depends=[]; }; parmsurvfit = derive2 { name="parmsurvfit"; version="0.1.0"; sha256="0d3614q76dw3f7y9p8378hdny7bz5fymma5l0zpygr1cfnacdhh6"; depends=[fitdistrplus flexsurv ggplot2]; }; - paropt = derive2 { name="paropt"; version="0.2.1"; sha256="0a9xd340lqmj32vzwbnrxqa3cklprpikr8f8d8xfj8n1cyw39jwl"; depends=[Rcpp RcppArmadillo]; }; parqr = derive2 { name="parqr"; version="0.1.0"; sha256="11956dvv46sgpmbv429c24wxdhfqvc07jxc1i4yymyz1l8wgr3yb"; depends=[arrow magrittr purrr]; }; - parquetize = derive2 { name="parquetize"; version="0.5.5"; sha256="0rxd3hqwpisy0fxzd1v9n6v62a4akgz8pklhk8k8xq1jxwvdmy8n"; depends=[arrow cli curl DBI dplyr haven jsonlite lifecycle readr RSQLite tidyselect]; }; + parquetize = derive2 { name="parquetize"; version="0.5.6.1"; sha256="0wnq5naq50g159ii7s33v5yiaykmgcvbc6d6f8fgng4kbpkmc569"; depends=[arrow cli curl DBI dplyr fst glue haven jsonlite lifecycle readr RSQLite tidyselect]; }; parseRPDR = derive2 { name="parseRPDR"; version="1.0.1"; sha256="14h56y7x38ll63rq4x6grws5ddcbf3rgksfpv95dxgbh25bx5rqr"; depends=[data_table doParallel foreach readr stringr]; }; parsec = derive2 { name="parsec"; version="1.2.6"; sha256="04irxvzk47cy7bpbzz4a12b5m4ar6y4a060j8ydll4ckjia9nyj0"; depends=[igraph netrankr]; }; parsedate = derive2 { name="parsedate"; version="1.3.1"; sha256="1cfinqlbchmkhkgmdwiy3mnxb17lp02jfk2gpw56hq9vh6wimhqz"; depends=[]; }; parsel = derive2 { name="parsel"; version="0.3.0"; sha256="0d2sviaq94v5szd2qq1kdpirp3zyrx6r3kyins9xyfma9026770x"; depends=[lubridate purrr rlang RSelenium]; }; parsermd = derive2 { name="parsermd"; version="0.1.2"; sha256="15fy5vgzbrxq1yj4bgd0q1n5gjwvfh6s03ar5mj3hpp5mz6qmsdg"; depends=[BH checkmate cli dplyr lifecycle magrittr pillar purrr Rcpp readr rlang rmarkdown tibble tidyr tidyselect withr yaml]; }; - parsnip = derive2 { name="parsnip"; version="1.0.4"; sha256="1305z2pamxxaqy0qylb8vq6ixs934kfc9h2si2fdy7q5wjpdjnjh"; depends=[cli dplyr generics ggplot2 globals glue hardhat lifecycle magrittr pillar prettyunits purrr rlang tibble tidyr vctrs withr]; }; + parsnip = derive2 { name="parsnip"; version="1.1.0"; sha256="13bp44i8i99yiahdjikf0xidfgxd251nhbxsnsw0ax1lv24fpggc"; depends=[cli dplyr generics ggplot2 globals glue hardhat lifecycle magrittr pillar prettyunits purrr rlang tibble tidyr vctrs withr]; }; partDSA = derive2 { name="partDSA"; version="0.9.14"; sha256="1kp0cdsdjiay349jz22iqfzvspny8s343cfan8xahgf931k9h8p6"; depends=[survival]; }; partR2 = derive2 { name="partR2"; version="0.9.1"; sha256="06ky0hhrq0mcsn9rwrzvwn0rrjj0l8rxs0hqp10668gdq5hjk8bn"; depends=[dplyr ggplot2 lme4 magrittr pbapply purrr rlang tibble tidyr]; }; partialised = derive2 { name="partialised"; version="0.1.1"; sha256="0rb9d5p21f1y0c8arwh1lf516vw30qinf15rkrv49qw97dvvb9db"; depends=[pillar purrr rlang vctrs]; }; @@ -14133,14 +14333,14 @@ in with self; { partsm = derive2 { name="partsm"; version="1.1-3"; sha256="17md3j41knscllckiqnvkqvf2v0fgsig101vgg6z5ic1yzvzfxgs"; depends=[]; }; parttime = derive2 { name="parttime"; version="0.1.1"; sha256="0xmxbvar4xazhnzmq9fdpyczsywjjc9dif350h9y77ydrj5i5xcz"; depends=[crayon lubridate pillar vctrs]; }; party = derive2 { name="party"; version="1.3-13"; sha256="0yvyi4djhwa3mln2jlmg39lw5s2syz7jjfdby3nb3war1izmxw6y"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; - partykit = derive2 { name="partykit"; version="1.2-19"; sha256="0ma3haanf5pkj8r8q3bd0ig3zq9ppfjhhfkh6v50m82z6fprm3p4"; depends=[Formula inum libcoin mvtnorm rpart survival]; }; + partykit = derive2 { name="partykit"; version="1.2-20"; sha256="1np0sa7fx7wvwxbpk5lpgbdpz0xwcvppq0sc52nifx1dxnirll33"; depends=[Formula inum libcoin mvtnorm rpart survival]; }; parzer = derive2 { name="parzer"; version="0.4.1"; sha256="0v97cfjkggkdhv8gc0ffgbijgwxzpz7n44z7gsmkvggjj3wsxvpr"; depends=[Rcpp withr]; }; pasadr = derive2 { name="pasadr"; version="1.0"; sha256="0gc44jbqn96bn7f6xjmszz5lgsby24sxziixvhbkh5lgs4zap8i2"; depends=[pracma scales]; }; pass_lme = derive2 { name="pass.lme"; version="0.9.0"; sha256="1rxm509vnkdvdxii4jwniirdb2pv90rjkf6wjc9zrjh88jrl678k"; depends=[]; }; passport = derive2 { name="passport"; version="0.3.0"; sha256="176pkc7x76339bawdwywdcmiynzzlrwr91fgf5q0rq7asd9nc7d1"; depends=[]; }; passt = derive2 { name="passt"; version="0.1.3"; sha256="0yphnw38wwv303lkbfj2y3fwfjnd8l7gyi60c7xaj6qwy4y5ww8k"; depends=[dplyr magrittr rlang tidyr]; }; password = derive2 { name="password"; version="1.0-0"; sha256="1ijzqdw54l8wvpy6ys28njvhplzjxzzi5i9y41vjnrr88n13977v"; depends=[]; }; - pastclim = derive2 { name="pastclim"; version="1.2.3"; sha256="0an1x7zhhnj7w4dfj3zc57fx2sbwzwknp5s3v7bgdi0ydxpkxp62"; depends=[curl ncdf4 terra]; }; + pastclim = derive2 { name="pastclim"; version="1.2.4"; sha256="0izfnafqxn874xbb6phybb8l5hpcpzhnrhp0dvmmfqhmf68z5r7d"; depends=[curl ncdf4 terra]; }; pasteAsComment = derive2 { name="pasteAsComment"; version="0.2.0"; sha256="1837s2bfxpgjs15q1brr166iyar2xzvmdj0qxknb8hnqrmi207mf"; depends=[clipr rstudioapi]; }; pastecs = derive2 { name="pastecs"; version="1.3.21"; sha256="0z4dic94ar646w7zc2ggi5hgvf2qnznsani94c5pyql8zspz47lc"; depends=[boot]; }; patchDVI = derive2 { name="patchDVI"; version="1.11.0"; sha256="1cxgbrwb2qz39b9q1afz2i1pbnqyyi0hz8zc6j1i0llayyd6pgxk"; depends=[RmdConcord]; }; @@ -14150,8 +14350,8 @@ in with self; { patentsview = derive2 { name="patentsview"; version="0.3.0"; sha256="1ysqarmqqbw7zy1c3nfa08i6byima31pmcvv60qz9qjpyd2np0fn"; depends=[httr jsonlite]; }; path_chain = derive2 { name="path.chain"; version="0.2.0"; sha256="1p28mcar4krgvkgn02xrlwcpzchnppn2l2k2iwh511c3qrfpy653"; depends=[logger rlang stringi]; }; pathdiagram = derive2 { name="pathdiagram"; version="0.1.9.1"; sha256="018frv1n3x0bf1682jibnm5k2dlkg85xa9mps28l22a0z8bplbv5"; depends=[shape]; }; - pathfindR = derive2 { name="pathfindR"; version="1.6.4"; sha256="140m63cwwk3xrmgr8jrxa0nv0wjmkzqlrdbgq6g2g837khwfjj7y"; depends=[AnnotationDbi DBI doParallel foreach fpc ggplot2 ggraph ggupset igraph KEGGgraph KEGGREST knitr magick msigdbr org_Hs_eg_db pathfindR_data R_utils rmarkdown]; }; - pathfindR_data = derive2 { name="pathfindR.data"; version="1.1.3"; sha256="1gvlfkpk4fxh10vs792qdj5k3yvlc3dizh780c5a2xvdy1jj6gwm"; depends=[]; }; + pathfindR = derive2 { name="pathfindR"; version="2.1.0"; sha256="0ipg5kf3y03r39q9gkbx69hkj9r21w67xdb4c18lpg0ndsrmh3il"; depends=[AnnotationDbi DBI doParallel foreach fpc ggplot2 ggraph ggupset igraph KEGGgraph KEGGREST knitr magick msigdbr org_Hs_eg_db pathfindR_data R_utils rmarkdown]; }; + pathfindR_data = derive2 { name="pathfindR.data"; version="2.0.0"; sha256="17gq9na4d6ls0dkvy4v1gjg29v7jm7ms9k83c2p6q2q1273ahxpb"; depends=[]; }; pathlit = derive2 { name="pathlit"; version="0.1.0"; sha256="0harvldkhq2c1wb9i4n72w1s3frhjzyn4cjpwk1n350zg12kh9gz"; depends=[httr jsonlite testthat timeSeries usethis]; }; pathmapping = derive2 { name="pathmapping"; version="1.0.2"; sha256="0kx4wxf6lhi58sif8fzr5w4wa0i5253fq4v0ynp721fv1hkvmhvz"; depends=[]; }; pathmodelfit = derive2 { name="pathmodelfit"; version="1.0.5"; sha256="1nxcnmz9r99znqmwibvvix7h3acp22cs6wp1jmp21p862ncabll8"; depends=[lavaan]; }; @@ -14194,6 +14394,7 @@ in with self; { pbm = derive2 { name="pbm"; version="1.2.1"; sha256="0nkqhrvlzf2imkq5pbni3c1k4vc75y26rra3czbchs111v7jrcqv"; depends=[]; }; pbmcapply = derive2 { name="pbmcapply"; version="1.5.1"; sha256="1p8jf7c4k45482w72sr0jw4jkz787krrxai3sl6jz5l4lda2iz3z"; depends=[]; }; pbo = derive2 { name="pbo"; version="1.3.5"; sha256="0grj5h06kz8w2p7rzdibg95zpy30r056w14hmy7ij3bpi98sm79z"; depends=[foreach lattice latticeExtra]; }; + pbr = derive2 { name="pbr"; version="0.0.1"; sha256="0gzj4hhrqm7nbxndycqg135l42026xj7y4hpznyi7cib4gf8bqs4"; depends=[htmltools httr jsonlite leaflet]; }; pbs = derive2 { name="pbs"; version="1.1"; sha256="0cpgs6k5h8y2cia01zs1p4ri8r7ljg2z4x8xcbx73s680dvnxa2w"; depends=[]; }; pbv = derive2 { name="pbv"; version="0.4-22"; sha256="0658k8ql78y756l15wx0i6gpicgkbczwc6g7dg15i81xy1hg49qb"; depends=[Rcpp RcppArmadillo]; }; pcFactorStan = derive2 { name="pcFactorStan"; version="1.5.3"; sha256="0xyz0nmgyc1i46b37qs1ip25pv4932qn5fdisbdxmwig2sxvacd9"; depends=[BH igraph lifecycle loo mvtnorm Rcpp RcppEigen RcppParallel reshape2 rstan rstantools StanHeaders]; }; @@ -14210,7 +14411,7 @@ in with self; { pcatsAPIclientR = derive2 { name="pcatsAPIclientR"; version="1.0.0"; sha256="07klw04zq3q18d13grmgjl4fywby7bazxm28v25snrim33n2ybhp"; depends=[httr jsonlite testthat]; }; pccc = derive2 { name="pccc"; version="1.0.5"; sha256="0jh8yadks76ip9jmgvld9nycdm74f5gllkyhfmnrir8vi6xwvbad"; depends=[dplyr Rcpp]; }; pcdpca = derive2 { name="pcdpca"; version="0.4"; sha256="0ys4hrin0w3f87d1d986wvrfkfwapzj9hz7d7v92r60ns74g7r5m"; depends=[fda freqdom]; }; - pcds = derive2 { name="pcds"; version="0.1.5"; sha256="00gwcqa66vbwsxar4q18j30wfi0d5dxzljhyanacb64bgddqsshx"; depends=[combinat gMOIP interp plot3D plotrix Rdpack]; }; + pcds = derive2 { name="pcds"; version="0.1.6"; sha256="1kkr6pdyqgrr1p5h435rklbygvbnav1qzzlgrhqwkg89gp5p8ic4"; depends=[combinat gMOIP interp plot3D plotrix Rdpack]; }; pcensmix = derive2 { name="pcensmix"; version="1.2-1"; sha256="1yrz4hdj52in8z65qyl18kh7frv75rb8ss5ljv3vbm6yhxi32jnd"; depends=[]; }; pcev = derive2 { name="pcev"; version="2.2.2"; sha256="1l0afcdzkxzkhkc8ln2fzi50hc7nfq46lg6hhx6rrzkb41w82iqw"; depends=[corpcor RMTstat]; }; pcg = derive2 { name="pcg"; version="1.1"; sha256="194j72hcp7ywq1q3dd493pwkn1fmdg647gmhxcd1jm6xgijhvv87"; depends=[]; }; @@ -14224,7 +14425,7 @@ in with self; { pcr = derive2 { name="pcr"; version="1.2.2"; sha256="1lmgm8k3s7780ivrdj0zk1ninx7b5jffir6q5p2p47h62qqjmp5d"; depends=[ggplot2]; }; pcse = derive2 { name="pcse"; version="1.9.1.1"; sha256="1rb9146vjkf36vc5v3frykmsff7kp6qp1hhmj8pak583in4rz8f8"; depends=[]; }; pcsstools = derive2 { name="pcsstools"; version="0.1.1"; sha256="1vp4lflxzzgjfh1nkkfvnb74pjmbcdgrc1hlakjd8i5rw7swvr20"; depends=[gtools Rdpack]; }; - pct = derive2 { name="pct"; version="0.9.8"; sha256="0bnqkrlgr78bccvwwwcscy659ivrpgj8vb8bmh4416ni3hvsk2s9"; depends=[boot crul readr sf stplanr]; }; + pct = derive2 { name="pct"; version="0.9.9"; sha256="15rshwdrfkr0ahnywss0qqbcyfxakknv9ffvb58nzc960c97zmy8"; depends=[boot crul readr sf stplanr]; }; pcts = derive2 { name="pcts"; version="0.15.5"; sha256="03iammgirj3vnrwh0fxvy3r08z3da23jbjkb2fzpya1pxfb2rnjq"; depends=[BB gbutils lagged lubridate Matrix mcompanion PolynomF Rdpack sarima xts zoo]; }; pcv = derive2 { name="pcv"; version="1.0.1"; sha256="0rmb024d378fb13r7rll74p6kj7mkbr2ggic7k446aivccwzr7hr"; depends=[]; }; pdR = derive2 { name="pdR"; version="1.8"; sha256="1sjlcd8g564jrwmlhpjypgwqywz3ggq4lb6xwqzc1basbsx5zfrn"; depends=[boot car coefplot lmtest papeR plm sandwich]; }; @@ -14242,7 +14443,7 @@ in with self; { pdist = derive2 { name="pdist"; version="1.2.1"; sha256="0bvg8si81hs79v39d7svv4zbv2p0sk2r6m9vamibvkh9qvl4x406"; depends=[]; }; pdmod = derive2 { name="pdmod"; version="1.0.1"; sha256="04bk9gjg2c55hk6k1hy0m29927s8a5ig6mr4xb89npam68g0pcms"; depends=[mco]; }; pdp = derive2 { name="pdp"; version="0.8.1"; sha256="0v1pr8fvx1z11kci6rna5bd8bk280p6lqrpxr3akflspbmpbcgg2"; depends=[foreach ggplot2 lattice rlang]; }; - pdqr = derive2 { name="pdqr"; version="0.3.0"; sha256="0agkxl23h57smq292l5b0wdi2ixxg6l0fi74sans5hljmyg2zqns"; depends=[]; }; + pdqr = derive2 { name="pdqr"; version="0.3.1"; sha256="0yvdvibr5a8bbz6zyvfjv4lzl0fjg7kz8jh67pw4nc1zk1kd8imh"; depends=[]; }; pdt = derive2 { name="pdt"; version="0.0.2"; sha256="1a6h1877vpl0giwjkz7q7p1mzjp9ngkhijhn6l57a1q4sbl84way"; depends=[]; }; pdxTrees = derive2 { name="pdxTrees"; version="0.4.0"; sha256="0cw1zrkawc2wnbd2pif8732kl92qvklxvx6hnikx3siz22psvbl8"; depends=[dplyr magrittr rlang]; }; pdynmc = derive2 { name="pdynmc"; version="0.9.8"; sha256="0zhf46d6ppgp5w5a1c7l5dwpz74l1wri3b8yzk7mwr3wnv89p8py"; depends=[data_table MASS Matrix optimx qlcMatrix Rdpack]; }; @@ -14252,7 +14453,7 @@ in with self; { peacots = derive2 { name="peacots"; version="1.3"; sha256="128qpz06b0giz80lp9yq9l6pxcjglfr97yickg7z64vzzl2jilmq"; depends=[]; }; peakRAM = derive2 { name="peakRAM"; version="1.0.2"; sha256="0mj7f8jqkfky61xag2km0svbgvfmif3c1d8ccav6pv1963cg3cvv"; depends=[]; }; pearson7 = derive2 { name="pearson7"; version="1.0-3"; sha256="0vdhhds1lngaff7dkx4b1az3syqw8b22w2jskcrw0m49wp1dbbha"; depends=[]; }; - pec = derive2 { name="pec"; version="2022.05.04"; sha256="0s0lfr8747gfnn9hrwacbh160mn593p28qvima5dz9aabndhg8a7"; depends=[foreach lava prodlim riskRegression rms survival timereg]; }; + pec = derive2 { name="pec"; version="2023.04.12"; sha256="15ggf3fa1p5r0dl7k2j99cc920jvmk0p1ny0jzyrpddh8fcgwlk5"; depends=[foreach lava prodlim riskRegression rms survival timereg]; }; pecora = derive2 { name="pecora"; version="0.1.1"; sha256="0l66brd5d24hn279ck785jy4qnxiv9lc3d1czh4f3l25d0hj99xi"; depends=[matrixStats Rcpp RcppArmadillo]; }; pedSimulate = derive2 { name="pedSimulate"; version="1.4.0"; sha256="0x1djd9kjnbp8wrx2iy1hh3psf77lmhyipzdbyysd95ym6wkldvk"; depends=[]; }; pedalfast_data = derive2 { name="pedalfast.data"; version="1.0.0"; sha256="02s6igrybcfs8nyxr50iiwclhrwnq3x2x5w886imrlp2wbkf13m4"; depends=[]; }; @@ -14262,20 +14463,19 @@ in with self; { pedigree = derive2 { name="pedigree"; version="1.4.2"; sha256="1b3zhjn6sl1pnkfqim6xzk6qdak6acdpim585xhjl1rbc41540qx"; depends=[HaploSim Matrix reshape]; }; pedigreemm = derive2 { name="pedigreemm"; version="0.3-3"; sha256="1bpkba9nxbaxnivrjarf1p2p9dcz6smf9k2djawis1wq9dhylvsb"; depends=[lme4 Matrix]; }; pedmod = derive2 { name="pedmod"; version="0.2.4"; sha256="1xr98vp2s3s2cw4bjdw6156zas15jxvp9fbyz9rxd68i3zrblplx"; depends=[alabama BH psqn Rcpp RcppArmadillo testthat]; }; - pedmut = derive2 { name="pedmut"; version="0.5.0"; sha256="1kas20blvm3c1mqf25md4svdfqb68z7kr7zinbgmhmhmiigxiqgj"; depends=[]; }; + pedmut = derive2 { name="pedmut"; version="0.6.0"; sha256="0zgkgmzzw8kmiacvfjdfqc04gwiv04g5p71b4rkndgb8d68v0f6m"; depends=[]; }; pedometrics = derive2 { name="pedometrics"; version="0.12.1"; sha256="06s1iyv2nldqqkh1n3cgl3a7ribk17kyadgfx76lpgy016fi7vz5"; depends=[lattice latticeExtra Rcpp]; }; - pedprobr = derive2 { name="pedprobr"; version="0.7.1"; sha256="1pw4rv877k1can6k9x2gcvvc1irvajnpfjjjnjf6di29isqd45hc"; depends=[pedmut pedtools]; }; - pedquant = derive2 { name="pedquant"; version="0.2.1"; sha256="0kg29nsywrx8xczk6zw2xl83f5g0wxf6iwkhgawq1am3anr64ck6"; depends=[curl data_table echarts4r httr jsonlite lubridate PerformanceAnalytics readr readxl rvest stringi TTR xefun zoo]; }; + pedprobr = derive2 { name="pedprobr"; version="0.8.0"; sha256="0fkr1lsw1aj6010xnjkqd514gpkz88xjw52i6ic47f6pyl0m6irz"; depends=[pedmut pedtools]; }; + pedquant = derive2 { name="pedquant"; version="0.2.2.1"; sha256="1b7a9y7w3wa8v0wjg3n30ddf228fb17fgijcm680qqbh3sqrrl7k"; depends=[curl data_table echarts4r httr jsonlite lubridate PerformanceAnalytics readr readxl rvest stringi TTR xefun zoo]; }; pedsuite = derive2 { name="pedsuite"; version="1.1.0"; sha256="19vbfn8dy7a4hrrv8zsja721lchng55gvc26xlkzx5dl96d2xp9w"; depends=[dvir forrel ibdsim2 paramlink2 pedbuildr pedmut pedprobr pedtools ribd segregatr verbalisr]; }; - pedtools = derive2 { name="pedtools"; version="2.1.1"; sha256="1xj8bz63ylb14wdrplf4f1519gnnzlnpij0plvr07z611s6nf5yw"; depends=[kinship2]; }; + pedtools = derive2 { name="pedtools"; version="2.2.0"; sha256="1vzh88bxd3mcas8c41l30xsimp242xahrslyrll4r9f9vs959v01"; depends=[kinship2 pedmut]; }; peermodels = derive2 { name="peermodels"; version="0.10.3"; sha256="116xn5w7rwm9q0m7bj4z29l4hspj2nqdcxzir9dqpdqmf7z58v67"; depends=[curl httr httr2 jsonlite stringr]; }; pegas = derive2 { name="pegas"; version="1.2"; sha256="0mdd6wwbgln7272am9pk3p5garmkkf3j76lli4hnxsh9gj9z6fcx"; depends=[ape]; }; pell = derive2 { name="pell"; version="0.1.0"; sha256="1621lnv6sii072did3kj6wapgh9iiqajayvkrmz7q86bp89405sm"; depends=[]; }; pema = derive2 { name="pema"; version="0.1.3"; sha256="0ymzq5s86z97sac1gq8qdh37p2aa39j4pz1n29ga3l0kmv5cxjky"; depends=[BH ggplot2 Rcpp RcppEigen RcppParallel rstan rstantools shiny sn StanHeaders]; }; pems_utils = derive2 { name="pems.utils"; version="0.2.29.1"; sha256="0nmawl1l2wf77r02qpazqwm5708fk98k7l07wyybviwb1j3x1pqj"; depends=[baseline dplyr ggplot2 lattice latticeExtra loa RColorBrewer Rcpp rlang]; }; pemultinom = derive2 { name="pemultinom"; version="0.1.0"; sha256="0xxcar0vmp6cc58471n5lnp5z5avrn3cv60mjdc96ifms0ghi3vl"; depends=[doParallel foreach magrittr nnet Rcpp]; }; - penAFT = derive2 { name="penAFT"; version="0.2.0"; sha256="1sqxw3kny7ys9b0zldnfdblg50zccp6kscqy0sx0h7g577zdyk09"; depends=[ggplot2 irlba Matrix Rcpp RcppArmadillo]; }; - penDvine = derive2 { name="penDvine"; version="0.2.4"; sha256="0znpvsr7zy2wgy7znha1qiajcrz1z6mypi3f5hpims33z7npa7dl"; depends=[doParallel fda foreach lattice latticeExtra Matrix quadprog TSP]; }; + penAFT = derive2 { name="penAFT"; version="0.3.0"; sha256="1yhg9fr3fwpxxcp0ri4iqfwa9f2y134y5b13qfils4y15cp0rnzj"; depends=[ggplot2 irlba Matrix Rcpp RcppArmadillo]; }; penMSM = derive2 { name="penMSM"; version="0.99"; sha256="1xdcxnagvjdpgnfa5914gb41v5y4lsvh63lbz1d2l8bl9mpff3lm"; depends=[Rcpp]; }; penPHcure = derive2 { name="penPHcure"; version="1.0.2"; sha256="1c90d6f78npvzsvcy9vh8s6izfgbcxzly37lpwhqgdl5daww03l1"; depends=[MASS Rcpp RcppArmadillo Rdpack survival]; }; penalized = derive2 { name="penalized"; version="0.9-52"; sha256="08badmgygppbqzay20qijyww028yw6s8dyd8ijcp8g4r9rn8xqyq"; depends=[Rcpp RcppArmadillo survival]; }; @@ -14287,7 +14487,7 @@ in with self; { pencopulaCond = derive2 { name="pencopulaCond"; version="0.2"; sha256="18hjjxnd0l2ms20ddqkghfbd4as5kq2rgwqzpz4y38k6nw76x511"; depends=[doParallel fda foreach igraph lattice latticeExtra pacotest quadprog TSP]; }; pendensity = derive2 { name="pendensity"; version="0.2.13"; sha256="1wcsib7m2161nqqrmgdvrj7lr8zq6njc9xr935hwfh3qbbgkmfjb"; depends=[fda lattice]; }; penfa = derive2 { name="penfa"; version="0.1.1"; sha256="1r8lq4kvlwlk7q0mdzkrdm9sx7lqq4l27jfxa1zcfh50sk1qlam2"; depends=[GJRM MASS mgcv trust]; }; - penppml = derive2 { name="penppml"; version="0.2.1"; sha256="0zlxm379l9ik3152wmvqqin7wrnx9q8d89b4afdqssj24ab88jdl"; depends=[collapse devtools dplyr fixest glmnet magrittr matrixStats Rcpp RcppEigen rlang]; }; + penppml = derive2 { name="penppml"; version="0.2.2"; sha256="0lspspk5bbxycfkwmw9sbz84rbhjsxmnza3692lrnadyrpaw3s39"; depends=[collapse devtools dplyr fixest glmnet magrittr matrixStats Rcpp RcppEigen rlang]; }; pense = derive2 { name="pense"; version="2.2.0"; sha256="1v077lmi7hs793yqv9m4ir0hd8s671714nj2gf3ya48qjmbizyg0"; depends=[lifecycle Matrix Rcpp RcppArmadillo rlang]; }; pensim = derive2 { name="pensim"; version="1.3.6"; sha256="18z43p1iswmnvwaf3k5vhv6rzzmfn618har0a0bl9j5nfzx20rpx"; depends=[MASS penalized]; }; peopleanalytics = derive2 { name="peopleanalytics"; version="0.1.0"; sha256="0ay85yxx30p4i8icn8l8ppjddiwkbw1g6ymnmvw5gnd9hgmwbrx0"; depends=[]; }; @@ -14303,11 +14503,12 @@ in with self; { perccalc = derive2 { name="perccalc"; version="1.0.5"; sha256="14557k7khc3l5m0vlam0fvbsb6p78v9gfcnx5ksxcvrab28xj7p3"; depends=[multcomp tibble]; }; percentiles = derive2 { name="percentiles"; version="0.2.2"; sha256="08gzl2qq0856nj20bdxl3r0a7p5f4cjmvxkaqkjvq4n275ghvskq"; depends=[assertive_types assertthat dplyr R6]; }; perfectphyloR = derive2 { name="perfectphyloR"; version="0.2.1"; sha256="1i1h5k2aqaqygd8gzq2bmz266mjzdi2mfikkz6hzmhi2il8708w9"; depends=[ape phytools Rcpp RcppArmadillo]; }; - performance = derive2 { name="performance"; version="0.10.2"; sha256="0r9x5pqf1asf0sy0255jv0d4cki4xd5sfp5rl9mldclykpswf022"; depends=[bayestestR datawizard insight]; }; + performance = derive2 { name="performance"; version="0.10.3"; sha256="1l4sr6cgg8rkgs5w98a36n79b1lbg241p60grsnz12hskppa1a6q"; depends=[bayestestR datawizard insight]; }; performanceEstimation = derive2 { name="performanceEstimation"; version="1.1.0"; sha256="08jx2zl6xh0rp54xa70gb717wbfdzfrx9b47i3b3ly41qaf85vrc"; depends=[dplyr ggplot2 parallelMap tidyr]; }; pergola = derive2 { name="pergola"; version="1.0"; sha256="1650ipp2b455xdkznwm7bnxvimad7nbyr9i1lg2vdh64j1qfh7gl"; depends=[seriation]; }; periscope = derive2 { name="periscope"; version="1.0.1"; sha256="06rhi77a7561a0k99sn9h0pxfgar4s8iyg2mligyig2z8j66dcqb"; depends=[DT fresh ggplot2 lubridate shiny shinyBS shinydashboard writexl yaml]; }; perm = derive2 { name="perm"; version="1.0-0.2"; sha256="182ac1y91yzb34zwdcmx5fdfr5z0cha0gx2bgk36gwxhgfc994kj"; depends=[]; }; + permChacko = derive2 { name="permChacko"; version="0.1.0"; sha256="0in292c8yclmhbzkdcv4abqh1gh2xwjlbd7k54mqhjj1m51y1l6p"; depends=[]; }; permGS = derive2 { name="permGS"; version="0.2.5"; sha256="0d2kp3c1fmnjjmsvc2qwh6m66yqvy2vrrxgv1fj2i4clsbavfa0y"; depends=[coin survival]; }; permPATH = derive2 { name="permPATH"; version="1.2"; sha256="074knhcn88nzisfl20ais71micnnjqbm5lqp6jfkqj176r2af7cq"; depends=[R2HTML xtable]; }; permimp = derive2 { name="permimp"; version="1.0-2"; sha256="1zq513bkallkkqghjilvgc5iw0pcglrdyc0r2sns4ck07a3q378j"; depends=[ipred party randomForest survival]; }; @@ -14340,7 +14541,7 @@ in with self; { pgam = derive2 { name="pgam"; version="0.4.17"; sha256="03sln908xwg909m3pxi6ihpq3vzb0v0mj6yac7bx29x5rxcd6psy"; depends=[]; }; pgdraw = derive2 { name="pgdraw"; version="1.1"; sha256="1s1b1izpgryrqsjkdh3yvr137054sipj3kwdkzlx2af8xjr53f85"; depends=[Rcpp]; }; pgee_mixed = derive2 { name="pgee.mixed"; version="0.1.0"; sha256="115vvpv54q80486i3xs2yhmfyx476cf4g1v43q6l7wj3jwzcrvbg"; depends=[copula mvtnorm Rcpp RcppArmadillo]; }; - pgirmess = derive2 { name="pgirmess"; version="2.0.1"; sha256="18a7ydmim3jz91nq7pny72k2dprv19c04h8xl033dzh1jnss84zs"; depends=[boot sf sp spdep]; }; + pgirmess = derive2 { name="pgirmess"; version="2.0.2"; sha256="1wdfybi6s976sqa8n1q7jni99xbwdmbi0zycl4nqk4kl1nqixlbm"; depends=[boot sf sp spdep]; }; pglm = derive2 { name="pglm"; version="0.2-3"; sha256="16ghdgnpwyqgfa6z6gc93bw933dvazb3alv1867cbn7qnp2gaj3j"; depends=[Formula maxLik plm statmod]; }; pgmm = derive2 { name="pgmm"; version="1.2.6"; sha256="0wbczca8dmkkhm72dwali9n67zmsc5zd1v55zn3d6kmhh3jjwcyj"; depends=[]; }; pgnorm = derive2 { name="pgnorm"; version="2.0"; sha256="1k9z7pvmranr8m62v7amc0pj6lwzh3wqi79gg3mflifn1mr6c057"; depends=[]; }; @@ -14362,6 +14563,7 @@ in with self; { phateR = derive2 { name="phateR"; version="1.0.7"; sha256="16xb6fy0aa024054jwfbavjbzhwj6g4p6yrzy1lnzvpn8kb23hn5"; depends=[ggplot2 Matrix memoise reticulate]; }; phd = derive2 { name="phd"; version="0.2"; sha256="14ck98h8ivaw88ybl5pwv70s5jwhkhdgmxg7q0b5bphj8hyf616r"; depends=[glmnet]; }; pheatmap = derive2 { name="pheatmap"; version="1.0.12"; sha256="1hdh74az3vyzz6dqa311rhxdm74n46lyr03p862kn80p0kp9d7ap"; depends=[gtable RColorBrewer scales]; }; + pheble = derive2 { name="pheble"; version="0.1.0"; sha256="14q66ldpksxsh5q7mpgp4d9p43kbx1v4yqd35p3gqi6qxrlb5q1z"; depends=[adabag C50 caret caTools data_table doParallel dplyr e1071 earth evtree frbs glmnet gmodels hda HDclassif ipred kernlab kknn klaR magrittr MASS Matrix mda MLmetrics nnet party pls randomForest rpartScore sparseLDA themis]; }; phecodemap = derive2 { name="phecodemap"; version="0.1.0"; sha256="12dhyzazdsf938zp7i4ckbh2h5fvxg209mb4mq319akp34746h50"; depends=[collapsibleTree config dplyr DT golem plotly purrr readr rintrojs shiny shinyBS shinycssloaders shinydashboard shinydashboardPlus]; }; phenModel = derive2 { name="phenModel"; version="1.0"; sha256="07jsc8jiwgxvhv4m6nr7llm22zzh5hd3pakw5c93jzim2835zvkp"; depends=[dplyr ggplot2 reshape]; }; phenesse = derive2 { name="phenesse"; version="0.1.2"; sha256="1f5m8pq1n6x9ic4b0cb7j3dwfn1xfkbbpn0zr32frkiai3jmzv3j"; depends=[boot fitdistrplus]; }; @@ -14384,17 +14586,17 @@ in with self; { phonenumber = derive2 { name="phonenumber"; version="0.2.3"; sha256="1gwh7cg1zyy197sj16wcxqyz2rx5z83cd4rwmf22ycpgvz2dwzw9"; depends=[]; }; phonfieldwork = derive2 { name="phonfieldwork"; version="0.0.11"; sha256="0a5qnl1r8g0h1nsp22awp6hy0lkdi6adc729grpz8mbniz4vdlkc"; depends=[phonTools rmarkdown tuneR uchardet xml2]; }; phonics = derive2 { name="phonics"; version="1.3.10"; sha256="1g4gmfz190xaj800gawl79fzhmgimssa31kqzw8a70scp5psz3fw"; depends=[BH data_table Rcpp]; }; - phosphoricons = derive2 { name="phosphoricons"; version="0.1.2"; sha256="1pqp4awyvkq6yrhg97nvfpwz2fi8zajc819swgdfcd7497n4hnnq"; depends=[htmltools]; }; - photobiology = derive2 { name="photobiology"; version="0.10.16"; sha256="1inrkk36zsnzj47qidv3w9yibywsdgcmxvk1gai50dqzsagc1n1s"; depends=[dplyr lubridate plyr polynom rlang splus2R stringr tibble tidyr zoo]; }; + phosphoricons = derive2 { name="phosphoricons"; version="0.2.0"; sha256="0g9qqgxnzi773mjrrzvlykmvqb7dpi2gxc999arbxkdnbp1lv463"; depends=[htmltools]; }; + photobiology = derive2 { name="photobiology"; version="0.10.17"; sha256="1anrs6182wrcndnyfrdgyxh67xap0xxqzsl58fhiw611xbky5rw6"; depends=[dplyr lubridate plyr polynom rlang splus2R stringr tibble tidyr zoo]; }; photobiologyFilters = derive2 { name="photobiologyFilters"; version="0.5.2"; sha256="0n987klwyj06xikmvg9cvsjzrxll1d7p358jw4ls0j46byki98s5"; depends=[photobiology]; }; photobiologyInOut = derive2 { name="photobiologyInOut"; version="0.4.26"; sha256="116mn0xl18v42xqk6r56ldbb2k8q9xb7k1kgarif5yncg8zdh1ib"; depends=[anytime colorSpec dplyr lubridate photobiology readr readxl stringr tibble tidyr tidyselect]; }; photobiologyLEDs = derive2 { name="photobiologyLEDs"; version="0.5.1"; sha256="1wlf8n7g9scnnz3gimbpfn1klqd88ff5yddvcsas6qb8bn7ia3aa"; depends=[photobiology]; }; photobiologyLamps = derive2 { name="photobiologyLamps"; version="0.5.1"; sha256="0np62vs5ad0h9mdbcia22gxndy20nrs377hs2hd80f3pqqppbmxa"; depends=[photobiology]; }; - photobiologyPlants = derive2 { name="photobiologyPlants"; version="0.4.2"; sha256="0ab5ks72mb5x03xc0ww9fcl0h13ja8402b1s670lqmmhyvp6fj3s"; depends=[photobiology photobiologyWavebands]; }; + photobiologyPlants = derive2 { name="photobiologyPlants"; version="0.4.3"; sha256="0s3c3x7l3q8a8zaf9nww7w551mdracp6ljy08959p3sgmrjic4kw"; depends=[photobiology photobiologyWavebands]; }; photobiologySensors = derive2 { name="photobiologySensors"; version="0.5.0"; sha256="122cfy6nsxngd8hnbq5frkgnzrb9fxw83l7mfwk0wy6gx7zsfx5s"; depends=[photobiology]; }; photobiologySun = derive2 { name="photobiologySun"; version="0.4.1"; sha256="15wp8q29m5c4qplind9098ikxmm1r60lw8cm0pa48lmh33638ia3"; depends=[photobiology]; }; photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.5.1"; sha256="0ckfs0kc14478fab35ayilmmvq72ph5bpdhbbb1kmwv3lf40lnc8"; depends=[photobiology]; }; - photosynthesis = derive2 { name="photosynthesis"; version="2.1.2"; sha256="13wg8j0yp3jp76qbqh5cl1q0k8aj7bfxqhv6d07i28lnb2183yf9"; depends=[checkmate crayon dplyr furrr ggplot2 glue gunit lifecycle magrittr minpack_lm nlme progress purrr rlang stringr tealeaves units]; }; + photosynthesis = derive2 { name="photosynthesis"; version="2.1.3"; sha256="0ahbfcbdrvh9x09x8fl4gh4lz2qk58kn8068ivsgnjmv6ais3ipd"; depends=[checkmate crayon dplyr furrr ggplot2 glue gunit lifecycle magrittr minpack_lm nlme progress purrr readr rlang stringr tealeaves units]; }; phreeqc = derive2 { name="phreeqc"; version="3.7.5"; sha256="13z1pl2hqv26bm6k3zj9hh69xw0jf1swjimmib82r8n0xjs5dy8m"; depends=[]; }; phuassess = derive2 { name="phuassess"; version="1.1"; sha256="0jplj9gih32dllx2hw5aqvc9b94sbrbv66s3a5r8mdbpjh93rhng"; depends=[]; }; phyclust = derive2 { name="phyclust"; version="0.1-33"; sha256="04x4ymqnmc20pns89i4zs2yp75vchdgjszsinnpddjiv3446cy1q"; depends=[ape]; }; @@ -14404,12 +14606,13 @@ in with self; { phylobase = derive2 { name="phylobase"; version="0.8.10"; sha256="0jzr1gdvmi4l640hwwzh9bxqmpja69bn3ygnaqx37awvyh7khi2s"; depends=[ade4 ape Rcpp rncl RNeXML]; }; phylocanvas = derive2 { name="phylocanvas"; version="0.1.3"; sha256="1l5br500lwwf7vp8wph5ykpkpqd15lypvhzy0c1cc8g8c6f7pckn"; depends=[ape htmlwidgets phylobase]; }; phyloclim = derive2 { name="phyloclim"; version="0.9.5"; sha256="107kilh0gwr84ig54g92zyk7zv553pky2bzpjqgf9fjwbm6fvmrs"; depends=[ape raster sp]; }; + phylocomr = derive2 { name="phylocomr"; version="0.3.4"; sha256="1ig9l4y9ma8fnzz7za1qmx8ibb24qsi3gcgn8v6fcksscj2agaad"; depends=[sys tibble]; }; phylogram = derive2 { name="phylogram"; version="2.1.0"; sha256="1p4h5pirc0m5pzc18q0jk3mcmb5n48gdf9abz03vml3a209xxl2v"; depends=[ape]; }; phylolm = derive2 { name="phylolm"; version="2.6.2"; sha256="04pz7i44s8w6py4nk2zilzjlkrf1c5dbb6jij7zfkk49hvslbynn"; depends=[ape future_apply]; }; phylometrics = derive2 { name="phylometrics"; version="0.0.1"; sha256="1pmr6l3wmaf91wdlsc5m63l07fibngnly2qzkma0rdi463ii03il"; depends=[mvtnorm]; }; phylopath = derive2 { name="phylopath"; version="1.1.3"; sha256="1j0gqd5027zd7xw6c8gkdqxwzqf0gw73m709gxqzk91xscnshg6q"; depends=[ape ggm ggplot2 ggraph igraph MuMIn pbapply phylolm purrr tibble]; }; phyloregion = derive2 { name="phyloregion"; version="1.0.6"; sha256="161pjy66vhpjwc4h9q4jiqpyzn0v4nawx8ahspjpc7a376rk5552"; depends=[ape betapart clustMixType colorspace dismo igraph Matrix phangorn randomForest raster rgdal rgeos sp vegan]; }; - phylosamp = derive2 { name="phylosamp"; version="0.1.6"; sha256="0bnj75hm6dlfx4milyl3idpaz0bxilmgwmcbai23gh5rgn2mpmcx"; depends=[cowplot ggplot2 RColorBrewer reshape2]; }; + phylosamp = derive2 { name="phylosamp"; version="1.0.1"; sha256="1y48c4qjcxcxia2ggp2dfi051z8zpp0a0ks3a7h69gsw34vh9kd7"; depends=[cli lifecycle rlang]; }; phyloseqGraphTest = derive2 { name="phyloseqGraphTest"; version="0.1.0"; sha256="0y1hxj68dcic4i7ihnw9hgf28qp6s6kpq4c08dy7gv19gq7sllgd"; depends=[ggnetwork ggplot2 igraph intergraph phyloseq]; }; phylosignal = derive2 { name="phylosignal"; version="1.3"; sha256="1h73wwczwak5v89mybq16lmmfr0fxfv5mx347ffipy6q9vgvwqx5"; depends=[adephylo ape boot DBI igraph phylobase Rcpp RcppArmadillo]; }; phylotate = derive2 { name="phylotate"; version="1.3"; sha256="092kvn32j06vm8ilwjkgidcz11r3qhsmi0cb0g0nnykw0a0vii4p"; depends=[]; }; @@ -14436,11 +14639,10 @@ in with self; { pinfsc50 = derive2 { name="pinfsc50"; version="1.2.0"; sha256="1547xyxmfb7zi8h9bsm6k67dcw4hpp129xzvmgwfw7r6p4af47zd"; depends=[]; }; pingers = derive2 { name="pingers"; version="0.1.1"; sha256="09np6aph6rhvdh6mwky8a57i38bi2amwi7x91p9kfb2mzkql8k8w"; depends=[data_table dplyr lubridate plotly reshape2 stringr tibble tictoc tidyselect]; }; pingr = derive2 { name="pingr"; version="2.0.2"; sha256="05crkb3fxz0g2vqlydma8jk85adhgb4xmah1zv2kg4fli6phg71c"; depends=[processx]; }; - pinnacle_API = derive2 { name="pinnacle.API"; version="2.3.3"; sha256="1b6adns1xr3cgcj2mdjvl16cm2vjjgsj2l8m2c47plyc5jh05qmb"; depends=[data_table httr jsonlite magrittr openssl purrr rjson uuid]; }; pinnacle_data = derive2 { name="pinnacle.data"; version="0.1.4"; sha256="1sl36i2857b3xwx7iwgy8mkgjvz7nfa74ch1n8kcxbj59ib7mp8p"; depends=[tibble]; }; pinochet = derive2 { name="pinochet"; version="0.1.0"; sha256="0qy18mlw34cv9p7b3qb5bidxyq44k0hzj91hm5vp6wkjhik4knvi"; depends=[]; }; pinp = derive2 { name="pinp"; version="0.0.10"; sha256="1qah1b9chn237pfxisjsn6rr4h9h9zdqrk323c0k1qds7vm0xpra"; depends=[knitr rmarkdown]; }; - pins = derive2 { name="pins"; version="1.1.0"; sha256="02xay3srzml5p9n3ssxfdxp9jnbw6d7zq11x8wqk3ygs9mz812b6"; depends=[cli digest ellipsis filelock fs generics glue httr jsonlite lifecycle magrittr mime openssl rappdirs rlang tibble whisker withr yaml zip]; }; + pins = derive2 { name="pins"; version="1.2.0"; sha256="1ziqg9q9gqjv7m2rgqpki9khsl31am7ylb3jrc2n1ayzlvg8zam9"; depends=[cli digest ellipsis fs generics glue httr jsonlite lifecycle magrittr purrr rappdirs rlang tibble whisker withr yaml]; }; pinterestadsR = derive2 { name="pinterestadsR"; version="0.1.0"; sha256="0fjnb9kp3s3v7xp8cwrdljms6vwldq3n37lz5ly0j6wsw4p4ssx5"; depends=[jsonlite]; }; pinyin = derive2 { name="pinyin"; version="1.1.6"; sha256="0rw9qd5hbcmpi30vdqs31ijy37d8jlpqv0xif2nndb8cwj8x5bw2"; depends=[data_table splitstackshape]; }; pipe_design = derive2 { name="pipe.design"; version="0.5.1"; sha256="0r0szkdzifxmnnbr6675w8ij4zwqgxj3gwahc7a74mxr51f7qh8j"; depends=[ggplot2 gtools xtable]; }; @@ -14449,7 +14651,6 @@ in with self; { pipebind = derive2 { name="pipebind"; version="0.1.1"; sha256="02414573kxawmm2jbrzcph20lbjrwj23s3ybghajyn0d7daw9g41"; depends=[]; }; pipefittr = derive2 { name="pipefittr"; version="0.1.2"; sha256="0pzd7f0rhn0rydncki666zlajdwyiay3apa17cb0xy5454d99mvh"; depends=[magrittr miniUI rstudioapi shiny stringr]; }; pipeliner = derive2 { name="pipeliner"; version="0.1.1"; sha256="1cyyd1bin89dh0zrhic3i541bj8nnaphg6jq2jqkhnxn2nvax11g"; depends=[]; }; - pipenostics = derive2 { name="pipenostics"; version="0.1.7"; sha256="0c0qnh8kjgnmsg8arj7jhpdyjcdm58j9lzwi0yvl7ygk4k2klgv3"; depends=[checkmate]; }; pirate = derive2 { name="pirate"; version="1.0.0"; sha256="160mmyqdwbc4g7n7q9i4xcqp6h9bcpcz7vavsgdcpvs2mjfhfpjx"; depends=[ggplot2 MASS plyr Rcpp RcppArmadillo]; }; piratings = derive2 { name="piratings"; version="0.1.9"; sha256="0krrcf2bwicdf9fn657vkcjg5zliwi82hw3xmaqi46mdix8896gh"; depends=[ggplot2]; }; pirouette = derive2 { name="pirouette"; version="1.6.6"; sha256="0mi2zg55m9hqlypgc3k3c2b06hisypkakkzghf7bpw1c1ysakym6"; depends=[ape babette beastier beautier DDD forcats magrittr mauricer mcbette nodeSub phangorn phytools plyr pryr readr stringr TESS tibble tidyr tracerer xtable]; }; @@ -14469,17 +14670,17 @@ in with self; { pkdata = derive2 { name="pkdata"; version="0.1.0"; sha256="1kmcalidw2zidd6i8ds0k057b3187by2k8z6764va43d5garbbcv"; depends=[lubridate]; }; pkgKitten = derive2 { name="pkgKitten"; version="0.2.3"; sha256="10q0sa6l4phi04d7a2pdiy5pykg9y4c8sp3hhg6g19jbldvyhx2w"; depends=[]; }; pkgbuild = derive2 { name="pkgbuild"; version="1.4.0"; sha256="1mjyln5njbvi0k97w8az2v5klmas6pqiz68mlylfll4nr503qzrm"; depends=[callr cli crayon desc prettyunits processx R6 rprojroot withr]; }; - pkgcache = derive2 { name="pkgcache"; version="2.0.4"; sha256="0nqgdpb3wh9zl9j566l6ih8snk7mi78fkhhrwl9x5g3hiwg13n88"; depends=[callr cli curl filelock jsonlite prettyunits processx R6 rappdirs]; }; + pkgcache = derive2 { name="pkgcache"; version="2.1.0"; sha256="01p2yaidz8w51ljybrb3v7gri9fp4bcz5hrj5jbrg002c0h3rh6g"; depends=[callr cli curl filelock jsonlite prettyunits processx R6 rappdirs]; }; pkgcond = derive2 { name="pkgcond"; version="0.1.1"; sha256="03a4blq3niw1mljzylamvmr3l43czqlww4i6n7zb0dlym9x8gs1w"; depends=[assertthat]; }; pkgconfig = derive2 { name="pkgconfig"; version="2.0.3"; sha256="0l1qph8zyi2sic3k2qcd7vlfl7rzfh1q7z7zvjkl5f7y1x2fy3rk"; depends=[]; }; pkgdepR = derive2 { name="pkgdepR"; version="1.0.0"; sha256="098fcj1s5rcjxmn57449f4zk9z2w4mqwxkvxxjazd1nj7wa45z8p"; depends=[dplyr magrittr scales viridisLite visNetwork]; }; - pkgdepends = derive2 { name="pkgdepends"; version="0.4.0"; sha256="0n648l0h2gczpwgkhd89ivwgygrcalry298vx4az41ib4ha02k0z"; depends=[callr cli curl desc filelock glue jsonlite lpSolve pkgbuild pkgcache prettyunits processx ps R6 rprojroot withr zip]; }; + pkgdepends = derive2 { name="pkgdepends"; version="0.5.0"; sha256="1g7izh5xkd9ppmfnvx6nzdk84c73byssbxqwnc8crlpr6pirip7a"; depends=[callr cli curl desc filelock glue jsonlite lpSolve pkgbuild pkgcache prettyunits processx ps R6 rprojroot withr zip]; }; pkgdown = derive2 { name="pkgdown"; version="2.0.7"; sha256="0sim3fwayf4mpxqi8y9v7clnkzs56amhxsc75lc1k0zskn374f7k"; depends=[bslib callr cli desc digest downlit fs httr jsonlite magrittr memoise purrr ragg rlang rmarkdown tibble whisker withr xml2 yaml]; }; pkgfilecache = derive2 { name="pkgfilecache"; version="0.1.4"; sha256="1fr650yb4wjz6flq4f8p2p5bck5q4kkrhlhlwjn832payq9p4zsp"; depends=[downloader rappdirs]; }; pkggraph = derive2 { name="pkggraph"; version="0.2.3"; sha256="1isiywgm20rypc5qr03p0k7lis76zzd96x5ncbvia644d2n13brm"; depends=[curl data_table dplyr ggnetwork ggplot2 htmltools igraph intergraph Matrix network networkD3 plyr RColorBrewer tibble]; }; pkglite = derive2 { name="pkglite"; version="0.2.1"; sha256="0kc2h9d0kszvgc5bhzar4h4y604msmdmcc1agvn9irffm54x848d"; depends=[crayon magrittr remotes]; }; pkgload = derive2 { name="pkgload"; version="1.3.2"; sha256="0bvbnj98b1yaiksdmfi017g2w3229a5pcsnpjamzrvpy5c1rml9m"; depends=[cli crayon desc fs glue rlang rprojroot withr]; }; - pkgmaker = derive2 { name="pkgmaker"; version="0.32.8"; sha256="0i8prn63miajx7wlil5dchasqnjp054gwp0h7x6586q55j6mgwqg"; depends=[assertthat codetools digest registry stringr withr xtable]; }; + pkgmaker = derive2 { name="pkgmaker"; version="0.32.10"; sha256="0cr95vmsb4gkl917wg4wwq8jihvwasdg18qzhk2cq224lrrh8awp"; depends=[assertthat codetools digest registry stringr withr xtable]; }; pkgndep = derive2 { name="pkgndep"; version="1.2.1"; sha256="1d2h1rgr803aw3n43iaacvqdv6b9ng97bwwsmrqc4rdyn0v532i7"; depends=[BiocManager BiocVersion brew ComplexHeatmap GetoptLong GlobalOptions hash]; }; pkgnet = derive2 { name="pkgnet"; version="0.4.2"; sha256="0y1b5psn680agsnyiy8yr5m5pzb1y6wsa7gms43nwgj6jjmmvgvv"; depends=[assertthat covr data_table DT futile_logger glue igraph knitr magrittr R6 rlang rmarkdown visNetwork]; }; pkgnews = derive2 { name="pkgnews"; version="0.0.2"; sha256="0kqyy1fchpcyclxh6gly23pkfcf5b3hpsq1bhj4ykzbl4bc002h2"; depends=[]; }; @@ -14497,7 +14698,7 @@ in with self; { plan = derive2 { name="plan"; version="0.4-4"; sha256="0xpl1hrq0cs1bi8wn1bb1d4lmb6g1dfzp8wlwa9g2bc12yw5q8hg"; depends=[]; }; planets = derive2 { name="planets"; version="0.1.0"; sha256="01zh7lgaykr9p186yy0vksn2pmc69b3xxh78w7z6wclvqjb7zh1p"; depends=[]; }; planningML = derive2 { name="planningML"; version="1.0.0"; sha256="1qndw6jxk2jgliw996h2qkqqdd22ycc8kvs8z0jmk43dmiyjqzfx"; depends=[caret dplyr lubridate Matrix MESS pROC tidyverse]; }; - plantTracker = derive2 { name="plantTracker"; version="1.0.1"; sha256="14q63fvp5r3hh36ydyj8cdhmmfirc7xzmx418jl2cljrn9c72rwl"; depends=[igraph Matrix sf units]; }; + plantTracker = derive2 { name="plantTracker"; version="1.1.0"; sha256="0qn07pb84j110zrml24gwb27za4wdxn0a4yfhc0c1174fipl6az1"; depends=[igraph Matrix sf units]; }; plantecophys = derive2 { name="plantecophys"; version="1.4-6"; sha256="1qf9a38n8nvvz8dvqra9mdsmkbkhxymjrin0wfis8g1ndf1f406c"; depends=[]; }; plantecowrap = derive2 { name="plantecowrap"; version="1.0.4"; sha256="0syxf63xy5whzw03ys5cxyw7689mr7ihgmqddv53jb8rlbwm84p8"; depends=[ggplot2 minpack_lm plantecophys tidyr]; }; plaqr = derive2 { name="plaqr"; version="2.0"; sha256="15pdb57123m3cahvcsyrrvxjwxvs2f389yxip91gjxn68jf6cx1l"; depends=[quantreg]; }; @@ -14518,14 +14719,13 @@ in with self; { plink = derive2 { name="plink"; version="1.5-1"; sha256="0rn2i9i8af9aq0xgxhpcdchs2952lq2d2sg8x3js0zi3vcml76k0"; depends=[lattice MASS statmod]; }; plinkFile = derive2 { name="plinkFile"; version="0.1.0"; sha256="0803hp822v9rqh4h437q2nmab19yamc4dbyi6iimm67ykp0d5xss"; depends=[]; }; plinkQC = derive2 { name="plinkQC"; version="0.3.4"; sha256="0l5gf7wf33fhzby0n2qzph02v7an2gj2dji1i129hxsxqnynx7dy"; depends=[cowplot data_table dplyr ggforce ggplot2 ggrepel igraph optparse R_utils sys UpSetR]; }; - plm = derive2 { name="plm"; version="2.6-2"; sha256="0r0yhr00hfjh5nksp4pbkifjyf6jbxcq8hwjqlbdmvkz51fi4ayz"; depends=[bdsmatrix collapse Formula lattice lmtest MASS maxLik nlme Rdpack sandwich zoo]; }; + plm = derive2 { name="plm"; version="2.6-3"; sha256="00scwxk8aw9s85ls3igspd7rk2jz3lk4irrgmy2crhpcbf3hpays"; depends=[bdsmatrix collapse Formula lattice lmtest MASS maxLik nlme Rdpack sandwich zoo]; }; pln = derive2 { name="pln"; version="0.2-2"; sha256="03jjmfr1dwz6p652y917g9rv2alyam9ws6xh9ig02d3w78b0rsv9"; depends=[]; }; plnr = derive2 { name="plnr"; version="2022.11.23"; sha256="1qi24zpvclamxxfppgll7rcmq7fysxf8chk6wlkwkzmjl5c3cs4n"; depends=[data_table digest foreach fs glue purrr R6 usethis uuid]; }; plogr = derive2 { name="plogr"; version="0.2.0"; sha256="0a8dhzlna79ggyhfr0nncgh15a9n6r0dsz664pz0ah323wpblqqf"; depends=[]; }; plot_matrix = derive2 { name="plot.matrix"; version="1.6.2"; sha256="1fsgzjcllrdlf55ww7dhyx1iaa59y2a6f1b1591j8m8in1fh7n6n"; depends=[]; }; plot3D = derive2 { name="plot3D"; version="1.4"; sha256="1h59zlsyzbjylaziwavppl9bjmnba4iiq34772y3dys6fqclajnh"; depends=[misc3d]; }; plot3Drgl = derive2 { name="plot3Drgl"; version="1.0.4"; sha256="1p8vypid2v1n255hlpxxlbnf1lyv2jywls0jfm7scfms5aisk1vd"; depends=[plot3D rgl]; }; - plot3logit = derive2 { name="plot3logit"; version="3.1.3"; sha256="0p12xm7i9319h3rx732vh49gzz3f817mdwkp4y8ha6f7pf2fjwz8"; depends=[dplyr ellipse forcats generics ggplot2 ggtern lifecycle magrittr purrr Rdpack stringr Ternary tibble tidyr tidyselect]; }; plotBart = derive2 { name="plotBart"; version="0.1.7"; sha256="10lkdrmc1f22m544w36ihpivicj1mw0x8cx1750ldyhphrd99za5"; depends=[bartCause dplyr ggdendro ggplot2 rpart tidyr]; }; plotDK = derive2 { name="plotDK"; version="0.1.0"; sha256="0lyhhc8yjxj3jhw72pn7i565z64mifi5iyc375yavs7axlcsl2nr"; depends=[dplyr ggplot2 mapproj plotly purrr rlang]; }; plotGMM = derive2 { name="plotGMM"; version="0.2.2"; sha256="1cgjajw3dprdlq9ri0gllbxcy33x311mbp9xdds8fgq6cs42ggyb"; depends=[amerika ggplot2 wesanderson]; }; @@ -14533,7 +14733,7 @@ in with self; { plotKML = derive2 { name="plotKML"; version="0.8-3"; sha256="093nbh2558pmca0vaq1xf5gyfy4p60fzgpkx8hyxifj99zvym50j"; depends=[aqp classInt colorRamps colorspace dismo gstat pixmap plyr raster RColorBrewer rgdal scales sf sp spacetime stars stringr XML zoo]; }; plotMCMC = derive2 { name="plotMCMC"; version="2.0.1"; sha256="0vxw6kbs1xvzi3sklxac9q1j4cbr8alr9c8fwifwyvpzpdk48ihf"; depends=[coda gplots lattice]; }; plotMElm = derive2 { name="plotMElm"; version="0.1.5"; sha256="0wwqzrpkmq9gzazdzlk62qig6vz43niada6fxh1wcsjqjwkcccgp"; depends=[ggplot2 interactionTest]; }; - plotRCS = derive2 { name="plotRCS"; version="0.1.3"; sha256="0qllalg3hklr4h85g81n78nyrwjl48k68bap24nfrpbb4j089hj3"; depends=[ggplot2 rms]; }; + plotRCS = derive2 { name="plotRCS"; version="0.1.4"; sha256="1n5xsbm97i8hfyslv1cfvp3hvkr23yvxfq8rxkryzxyfyklv86is"; depends=[ggplot2 rms]; }; plotROC = derive2 { name="plotROC"; version="2.3.0"; sha256="0kaz9hrimi9gi7cf7flag9kc9yrg5fdyylqa5hn53x4dy8vhj37g"; depends=[ggplot2 gridSVG plyr rlang shiny]; }; plotSEMM = derive2 { name="plotSEMM"; version="2.4"; sha256="0fircrayhz92zvkigkyb1zpn07bvssqs1ip15p926zj3rl77fqgy"; depends=[MplusAutomation plotrix plyr Rcpp shiny]; }; plotbb = derive2 { name="plotbb"; version="0.0.6"; sha256="0vyp558i0gvr9r3xldkd4ldkd6wx95w7xkkas8cyw0s7i13qqq60"; depends=[magrittr rlang scales]; }; @@ -14552,7 +14752,7 @@ in with self; { plotscale = derive2 { name="plotscale"; version="0.1.6"; sha256="0h2g0rv1lh70nqmqydgg5swwnwmy08wbjajxyb1c2a716rad765j"; depends=[]; }; plotwidgets = derive2 { name="plotwidgets"; version="0.5.1"; sha256="1n2hls9qzr3z1xamggj4l48ksz5m51qn5x63flyk34bh0cyhadi1"; depends=[]; }; plpoisson = derive2 { name="plpoisson"; version="0.3.0"; sha256="15g5z07m0rf4hm6nynrb3bmsiakg7j790lsy30ksxswxrzwb9a1k"; depends=[]; }; - pls = derive2 { name="pls"; version="2.8-1"; sha256="137jg3x7aqwyki29i4kzp8d6imn17nq6wzzfjw5q19pixvmpybp2"; depends=[]; }; + pls = derive2 { name="pls"; version="2.8-2"; sha256="1f7j47vyh26mp08730z21ssvia4df7rc8iiy5v3yclndc4wlqhi4"; depends=[]; }; plsRbeta = derive2 { name="plsRbeta"; version="0.3.0"; sha256="0xikaxg1n298j8mm4vzzn7bfma1lmhak39aawfhp3ny3j1d8llr4"; depends=[betareg boot Formula MASS mvtnorm plsRglm]; }; plsRcox = derive2 { name="plsRcox"; version="1.7.7"; sha256="1fkbynjlwi070yshnqcmw2f331yzr61f1mvm5dbw3iwg9ldhcbwr"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; }; plsRglm = derive2 { name="plsRglm"; version="1.5.1"; sha256="1xpf4rz4midrl62yn39bq4ax5yl8h18kcyv2ckxis888yv5b1bqr"; depends=[bipartite boot car MASS mvtnorm]; }; @@ -14575,21 +14775,22 @@ in with self; { plusser = derive2 { name="plusser"; version="0.4-0"; sha256="1g100dh8cvn9q09j0jbkw4xmwjdp1lm4651369975fm99nrlp1j9"; depends=[lubridate plyr RCurl RJSONIO]; }; plyr = derive2 { name="plyr"; version="1.8.8"; sha256="030706kwgqa2s5jd93ck271iqb0pj3fshrj9frg4wgp1pfs12cm7"; depends=[Rcpp]; }; pm3 = derive2 { name="pm3"; version="0.1.5"; sha256="1107qwfz49wqbs4cvr6vb1qxyx8694khk5h122nnshs0w7p51i1w"; depends=[tableone]; }; - pmc = derive2 { name="pmc"; version="1.0.4"; sha256="0y2h6r8dx721n0wwbc3i5j50j694kxanc4vxwr07939145bvpfac"; depends=[dplyr geiger ggplot2 ouch tidyr]; }; + pmc = derive2 { name="pmc"; version="1.0.5"; sha256="1v3x1h1hnxvg3qfkridsvz4f652yfs3fgl0kysnkkshxj9fl862q"; depends=[dplyr geiger ggplot2 ouch phytools tidyr]; }; pmclust = derive2 { name="pmclust"; version="0.2-1"; sha256="0wldf0bj406qxmlc7hsbamiak7qcwf8ixng9dfkswh511m3p05jd"; depends=[MASS pbdMPI]; }; pmd = derive2 { name="pmd"; version="0.2.1"; sha256="14xra1d6qx6gxnpiwfsxz200qhmm7s4zy2j8h5kwbvbpnykdyr5c"; depends=[data_table enviGCMS igraph RColorBrewer]; }; - pmetar = derive2 { name="pmetar"; version="0.4.0"; sha256="01ygxazc4j9w9dhmqfjgmjab4wws1n01xqikadxlj1i2i44cl1qp"; depends=[curl dplyr httr lubridate magrittr RCurl stringr tidyr]; }; + pmetar = derive2 { name="pmetar"; version="0.4.1"; sha256="03jh7x1nj3fgr9rl9f886sml2a14m7jlwad7vm1sw0pc7dqd04cd"; depends=[curl dplyr httr lubridate magrittr RCurl stringr tidyr]; }; pmhtutorial = derive2 { name="pmhtutorial"; version="1.5"; sha256="1hcw8hwpsivbhz86lnzy08q9n8vahnq8f7rmi4xkmg6b44582cqx"; depends=[mvtnorm Quandl]; }; pmlbr = derive2 { name="pmlbr"; version="0.2.0"; sha256="1f0i52ws8ywkz4c0s3ax3qa3qinqhv1k9qlghkama3b027zkl9zn"; depends=[FNN]; }; pmledecon = derive2 { name="pmledecon"; version="0.2.1"; sha256="10yry425y2ghcnp3mrjharf4blcqvwnxsm7kz90mzfq91qg4q5lv"; depends=[rmutil splitstackshape]; }; pmml = derive2 { name="pmml"; version="2.5.2"; sha256="1faad5yqyh6dx40056w74vlyw4wxjgh41jv8b2vf2gh26laf22kk"; depends=[stringr XML]; }; pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.3"; sha256="0315kb5x04pidpzr04yaxyynp0mz4ilzp7vkspq4agjkds5hyc88"; depends=[]; }; - pmparser = derive2 { name="pmparser"; version="1.0.16"; sha256="0waqlrr69yysbh8hbkgmkpkrws102i7ichvi5kgc99wvy2hdpfqy"; depends=[curl data_table DBI foreach glue iterators jsonlite R_utils RCurl withr xml2]; }; + pmparser = derive2 { name="pmparser"; version="1.0.17"; sha256="0yilwy72c4qfk0xs9wjmpggmsm5ng551sdw4531ycw5qb226z7mg"; depends=[curl data_table DBI foreach glue iterators jsonlite R_utils RCurl withr xml2]; }; pmr = derive2 { name="pmr"; version="1.2.5.1"; sha256="14m3y1sywnd77gyifz2nv5q7h85f81wl5c8glvc100zgljvbgwvc"; depends=[]; }; pmsampsize = derive2 { name="pmsampsize"; version="1.1.2"; sha256="0msbkjpzssgkc4ndx9s1rb8mgg07bx7fdlq48j5s8ak8n1gwdkyk"; depends=[]; }; pmultinom = derive2 { name="pmultinom"; version="1.0.0"; sha256="0p2amb3y4jl24r21fii1qpmdbn5pfgywrx8k7x1jxpg49rk7k0rp"; depends=[fftw]; }; pmwg = derive2 { name="pmwg"; version="0.2.0"; sha256="1f1r66ml24ys7nx5558c189a4gcaqkr16y87dmi4ravick9l5yfi"; depends=[checkmate coda condMVNorm MASS MCMCpack mvtnorm]; }; pmxTools = derive2 { name="pmxTools"; version="1.3"; sha256="1is56is0xg9syfwma90wqp7rxbgcv36qcpmcxnz0dlf7ypnvqsak"; depends=[chron data_tree dplyr ggdist gghalves ggplot2 magrittr MASS patchwork PKNCA scales stringr tibble xml2]; }; + pmxcode = derive2 { name="pmxcode"; version="0.1.1"; sha256="0gzx142xi03mydlrzjzvl378jcqpp7a69p0j6zd8dggc4zva8c2q"; depends=[bslib config dplyr glue golem htmltools htmlwidgets jsonlite magrittr markdown pillar rclipboard readr rhandsontable rlang shiny shinyAce shinyBS shinyFiles tidyr xfun]; }; pmxpartab = derive2 { name="pmxpartab"; version="0.5.0"; sha256="13r4xy0jvxdwjz3gic67fzgq87v18vs7df1ggd3hq89h6f28fxar"; depends=[data_table htmltools knitr table1]; }; png = derive2 { name="png"; version="0.1-8"; sha256="077nca3x0l6mq2g6izknzcn994bqs3nfqk7wscrjbfk2dnxzldjs"; depends=[]; }; poLCA = derive2 { name="poLCA"; version="1.6.0.1"; sha256="05kbkyrds430v729hi56q48yfwfi5m1f371gpb4h417z5fj6137d"; depends=[MASS scatterplot3d]; }; @@ -14600,8 +14801,8 @@ in with self; { pogit = derive2 { name="pogit"; version="1.3.0"; sha256="02h8j7bfayigq9az46mvi7n918p99533mnijnz1nkzrdi2v0x824"; depends=[ggplot2 logistf plyr]; }; poibin = derive2 { name="poibin"; version="1.5"; sha256="1sxryvwwz6ldsnkzdy56p8c895s5yvpcai9ndyjv1x5q3l05wf9v"; depends=[]; }; poilog = derive2 { name="poilog"; version="0.4.2"; sha256="0dk2c65b7aac2ak3ajgh3wa2jhqyfv1qp90flw8xcx3f5w5gyv7s"; depends=[]; }; - pointRes = derive2 { name="pointRes"; version="2.0.1"; sha256="0j5flvjdg0iypybbimxphi8y4f5d7xxk6q4cqiqr7f52y9p9bz79"; depends=[DescTools dplR ggplot2 plyr TripleR]; }; - pointblank = derive2 { name="pointblank"; version="0.11.3"; sha256="00h2zc53ddxvkginbfbwsgq7ghy45a0jq7gham5py28lrxdxahy4"; depends=[base64enc blastula cli DBI dbplyr digest dplyr fs glue gt htmltools knitr magrittr rlang scales testthat tibble tidyr tidyselect yaml]; }; + pointRes = derive2 { name="pointRes"; version="2.0.2"; sha256="1a3yj94rg16fbc47ahwdq17i8pganm6vg6xfl3b0glybw5f2hpkj"; depends=[DescTools dplR ggplot2 plyr TripleR]; }; + pointblank = derive2 { name="pointblank"; version="0.11.4"; sha256="08ljvbwzykj48hnslw3haqn1ibs6fdfh40i5vypblzvwa32j7zvj"; depends=[base64enc blastula cli DBI dbplyr digest dplyr fs glue gt htmltools knitr magrittr rlang scales testthat tibble tidyr tidyselect yaml]; }; pointdensityP = derive2 { name="pointdensityP"; version="0.3.5"; sha256="0n7p3b77m47avbr7n85knf31m9rlp43mdl3748ysj6wvxvhnivx4"; depends=[data_table]; }; pointr = derive2 { name="pointr"; version="0.2.0"; sha256="1qfxcyzi2sa49x00hidz054njj9mm7gkhv99faafb9x4gp3pcq0v"; depends=[stringr]; }; poio = derive2 { name="poio"; version="0.0-4"; sha256="12d47hn9rsx2n0fl107dpswfklnh8nkm0kspcxf7yfljayvxr474"; depends=[assertive_base assertive_files assertive_properties assertive_sets assertive_strings assertive_types devtools digest dplyr magrittr purrr R6 stringi tibble whoami]; }; @@ -14627,7 +14828,7 @@ in with self; { polle = derive2 { name="polle"; version="1.2"; sha256="1qw0p81phpzszjksm20wdszc2vis5grp1ir5lw4m7hzx4v8m3fw7"; depends=[data_table DynTxRegime future_apply lava policytree progressr SuperLearner survival targeted]; }; pollen = derive2 { name="pollen"; version="0.82.0"; sha256="0vmggbvacpbdz4zvn3cinip1b0ac44vgbydmsk6698hwgx9iwmfp"; depends=[dplyr lubridate purrr]; }; pollimetry = derive2 { name="pollimetry"; version="1.0.1"; sha256="09zmcwlgzl4fnkdg2m424ibv3izzrm595c7pi4mc3bd1g8sa2ypn"; depends=[brms repmis]; }; - pollster = derive2 { name="pollster"; version="0.1.4"; sha256="1nvkskqyxng7r4c9z59s5mg9gk8rvd70bd5cfr3wnhps713sripi"; depends=[dplyr forcats labelled rlang stringr tidyr]; }; + pollster = derive2 { name="pollster"; version="0.1.6"; sha256="0zjyy36mapg1c3fj8cav43f1x1aqg3ysf74fgsiiwqwjhdm08hpx"; depends=[dplyr forcats labelled rlang stringr tidyr]; }; polmineR = derive2 { name="polmineR"; version="0.8.8"; sha256="1ih1llbj7grr8rxzrjbkyx1sxncy94gvsjnblzs7waaqdn44nsm2"; depends=[cli data_table DT fs jsonlite knitr lifecycle magrittr Matrix pbapply RcppCWB rlang slam stringi tm xml2]; }; polspline = derive2 { name="polspline"; version="1.1.22"; sha256="0ys5sxr5q55ip49dsc3kbgcr3bn9dj5bblmshwm4jz8d0a7ikwmj"; depends=[]; }; polyCub = derive2 { name="polyCub"; version="0.8.1"; sha256="09a4n69f9m5y57wkxlhwn5xfhzpqrcyzfc6n5zywn5jkj5h7wijl"; depends=[sp]; }; @@ -14654,7 +14855,7 @@ in with self; { pomdp = derive2 { name="pomdp"; version="1.1.0"; sha256="0l9gc5nh99xdmm3k373hi4dh5qky5vb5s7r05kbyly4y4ii8fh5x"; depends=[foreach igraph Matrix pomdpSolve Rcpp]; }; pomdpSolve = derive2 { name="pomdpSolve"; version="1.0.3"; sha256="046anv1c36d7n7676ny3s7i2aasd6ka26i9z7kmq28blx0zkaf61"; depends=[]; }; pomodoro = derive2 { name="pomodoro"; version="3.8.0"; sha256="1y7a6097jlrrgqkxhb43n5nahf4m814inhmkm1495w0k5q1zmraf"; depends=[caret gbm ipred pROC randomForest tibble]; }; - pomp = derive2 { name="pomp"; version="4.7"; sha256="1kgqp4lsk3s3n68h22f1lb0vcyhv7p2v88jvnbza487q9h9ba1rg"; depends=[coda deSolve digest mvtnorm plyr]; }; + pomp = derive2 { name="pomp"; version="5.1"; sha256="0pj1fk3id2ilycwky0204i09x0kjwwl3jgibd98d6441hn2fvj6i"; depends=[coda deSolve digest dplyr mvtnorm]; }; pompom = derive2 { name="pompom"; version="0.2.1"; sha256="09jy4lrb2p71yk604ndfhqfz6znlc3bq72k42f0d1i1a8g3by8h6"; depends=[ggplot2 lavaan qgraph reshape2]; }; pompp = derive2 { name="pompp"; version="0.1.3"; sha256="0svlzhsm1kfwgjpx2cas63jm8v5b9cxlksipv758vxlnc3jiarvk"; depends=[coda geoR Rcpp RcppEigen RcppProgress]; }; pooh = derive2 { name="pooh"; version="0.3-2"; sha256="0qwa5j91aypasvsf4xcfbl6lz7llawdr38jiflzmfak2ad72rv7j"; depends=[]; }; @@ -14686,14 +14887,13 @@ in with self; { populationPDXdesign = derive2 { name="populationPDXdesign"; version="1.0.3"; sha256="0p73ddv3j1s1vs4j3axnsf39n626qjv0w1qlq9p7km4s6729bhgv"; depends=[devtools ggplot2 plyr roxygen2 shiny shinycssloaders]; }; porridge = derive2 { name="porridge"; version="0.3.1"; sha256="0m0aa7cqfkd45csgs0lapf72adjmf0xaii1klnk3kd4kxbclx8a6"; depends=[MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; port4me = derive2 { name="port4me"; version="0.5.1"; sha256="1r9mr2iir9j4g7r8d2d6mfjb6dsn8m6zvh3dbpwgf63pwcxrn069"; depends=[]; }; - portalr = derive2 { name="portalr"; version="0.3.11"; sha256="0li3simzryaakb96z6k64d2fzz1r5wpyzy9ib04xq8dvsfypb9fx"; depends=[clipr clisymbols crayon dplyr forecast httr lubridate lunar magrittr rlang tidyr tidyselect zoo]; }; + portalr = derive2 { name="portalr"; version="0.4.0"; sha256="1sgbmsb5zf2fsi1abs1cigwp2qwiijrd06b3z4hdsb58n6dwim1z"; depends=[clipr clisymbols crayon dplyr forecast httr lubridate lunar magrittr rlang tidyr tidyselect zoo]; }; portfolio = derive2 { name="portfolio"; version="0.5-2"; sha256="13w8gyaphg0qspjl6d0jh0jf3wvz4agy8vzkriba0k59qhdbi52f"; depends=[lattice nlme]; }; portfolio_optimization = derive2 { name="portfolio.optimization"; version="1.0-0"; sha256="1rdhwffsjc1pa1qq7rqy6dwk8yrcblkmijz94p2w7sf2v4jmwxxr"; depends=[magrittr MASS modopt_matlab xts]; }; portfolioBacktest = derive2 { name="portfolioBacktest"; version="0.4.1"; sha256="1qf7bbf3frivp0q55h3fj9ki2igaa6djpg3zv1x6hh53nl25dvbb"; depends=[digest evaluate ggplot2 pbapply PerformanceAnalytics quadprog quantmod R_utils rlang xts zoo]; }; portsort = derive2 { name="portsort"; version="0.1.0"; sha256="0swl39dn7lzwvps18bva4l64a441gkf6lbwcwrhlf93f1ardvxji"; depends=[xts zoo]; }; portvine = derive2 { name="portvine"; version="1.0.2"; sha256="1lhr4nxlr47sr77gk1q790rl7lwxs58gsaacl9rq7lyw24h8w7rs"; depends=[BH checkmate data_table dplyr dtplyr future_apply kde1d ppcor Rcpp RcppEigen RcppThread rlang rugarch rvinecopulib tidyr wdm]; }; postGGIR = derive2 { name="postGGIR"; version="2.4.0.2"; sha256="1jxmvgzq4hv7sy2zcs8jicp0223mhv3mywhxbay2nv3bl0h4xfgs"; depends=[abind accelerometry ActCR ActFrag cosinor cosinor2 denseFLMM dplyr GGIR ineq kableExtra minpack_lm refund survival tidyr xlsx zoo]; }; - postGIStools = derive2 { name="postGIStools"; version="0.2.4"; sha256="04d6iqnk7j2lgv1h5c94j6y89jk75pmv26sxa51s5iwkjq7rchym"; depends=[DBI jsonlite rgdal rgeos RPostgreSQL sp stringr]; }; postHoc = derive2 { name="postHoc"; version="0.1.3"; sha256="1l7r9md9iyav5vvjykpsnqv9whspzcmnppfpqm6qy5s5vk6b8zfd"; depends=[igraph multcomp]; }; postcards = derive2 { name="postcards"; version="0.2.3"; sha256="0kc8nbrqw5h14qw47rxl20yz9q0s8gk2g3lg7kcgsx7f1q514qsw"; depends=[rmarkdown rstudioapi]; }; postdoc = derive2 { name="postdoc"; version="1.2.0"; sha256="1jgqx1k24dg379lzvviyvmzr37kmdqzlv1j85himyi8h7mvli9n1"; depends=[jsonlite katex prismjs xml2]; }; @@ -14704,10 +14904,10 @@ in with self; { postlogic = derive2 { name="postlogic"; version="0.1.0.1"; sha256="11bpmfn375zpyg90dh44h86cvppzri1smmkn26jyydqjz74f4q9w"; depends=[]; }; postpack = derive2 { name="postpack"; version="0.5.4"; sha256="01h2la7ih7s9110162apbqjjn2i6il5m4300ga0r44r0fyw340a5"; depends=[abind coda mcmcse stringr]; }; potential = derive2 { name="potential"; version="0.2.0"; sha256="1zq82jlqxmz1cjg0wi1r7cqxq32f3dk6gzx11fnf5mfy44613vl2"; depends=[doParallel foreach mapiso sf]; }; + potions = derive2 { name="potions"; version="0.1.0"; sha256="1g25spjzh2l8xcv0vhy4rdlscs41cr9xa173gfafy3b1x3bik91p"; depends=[jsonlite lobstr rlang stringi yaml]; }; potools = derive2 { name="potools"; version="0.2.2"; sha256="1vn99kh9cpicljs3caz3pw12azm19sx8q9nybk0xfffrldmz6r2q"; depends=[data_table]; }; potts = derive2 { name="potts"; version="0.5-11"; sha256="1sm2y2nv3hpqmcshza74yy9awg7ygp6fna6pkzvqv4cakwvvxnck"; depends=[]; }; pould = derive2 { name="pould"; version="1.0.1"; sha256="0hr6j08whbc1jydz20rg0cphfiwx4pyrav49w9qs9dkcaqrpid7l"; depends=[BIGDAWG gap ggplot2 haplo_stats reshape2]; }; - povcalnetR = derive2 { name="povcalnetR"; version="0.1.1"; sha256="0ah6n3wpjiwyh0mancqqpvyknx25dxr13p0nqnrfzmhfwyaywar0"; depends=[dplyr httr js jsonlite memoise naniar purrr readr stringr tibble tidyr]; }; pow_int = derive2 { name="pow.int"; version="1.3"; sha256="0rpv14ni7ikhy7rd8z04xy5mvmnagj1ji5a31l56jyldwjrkqa9v"; depends=[]; }; powRICLPM = derive2 { name="powRICLPM"; version="0.1.1"; sha256="01mccy1s0sl3haz4q26vv1dfrgzdrkds8b1c38iv6zy5am68s9iy"; depends=[dplyr furrr future ggplot2 lavaan progressr purrr rlang]; }; powdR = derive2 { name="powdR"; version="1.3.0"; sha256="1bkx43xd46gzgiphknqyz2nyvviia0xkn4h8z4k2dwcfq92iwsbw"; depends=[baseline DT factoextra FactoMineR ggplot2 ggpubr nnls plotly plyr reshape rxylib shiny shinyWidgets tidyr]; }; @@ -14721,12 +14921,12 @@ in with self; { powerSurvEpi = derive2 { name="powerSurvEpi"; version="0.1.3"; sha256="1p1fw4jq4rxc273hmycxf4bkqm6zmfw0jdy2s65jy10q37r53ial"; depends=[pracma survival]; }; powerbiR = derive2 { name="powerbiR"; version="0.1.0"; sha256="0b7409j55m5nnp5nm9sgij635xpm39qkm3hajg3x0x8zxvfczfz6"; depends=[AzureAuth data_table httr jsonlite]; }; powerbydesign = derive2 { name="powerbydesign"; version="1.0.5"; sha256="006m127rc49bshgljd5d3ii6sfx24ndn2690ixj0vnqm2dp3zjnw"; depends=[gdata ggplot2 lme4 MASS plyr reshape2 stringr]; }; - powerindexR = derive2 { name="powerindexR"; version="1.0"; sha256="09gnxjb2lifpa25p20k3md0lzd9zgai6cx4k5fz872mbazvwkvnd"; depends=[CoopGame]; }; + powerindexR = derive2 { name="powerindexR"; version="1.0.1"; sha256="0yv879krnsm9vkwy05xm3vlm1n08s6w3y1vn4qf16vql3y8myr60"; depends=[CoopGame]; }; powerjoin = derive2 { name="powerjoin"; version="0.1.0"; sha256="19b7y7aqf5159x2fi5nrx179nc673qqzkv9c8kgw85hmmjzjgnb3"; depends=[cli dplyr glue purrr rlang tibble tidyr tidyselect vctrs]; }; powerly = derive2 { name="powerly"; version="1.8.6"; sha256="0vc2wpx2b4i9vx9jvvlywq5w4dx22bn4r9fcwz123h1m09252ng8"; depends=[bootnet ggplot2 mvtnorm osqp patchwork progress qgraph quadprog R6 rlang splines2]; }; powerpkg = derive2 { name="powerpkg"; version="1.6"; sha256="18cq3zsdvzmqjp0niq0libjk4riarmiar3h6lifq54spqgrvvxh2"; depends=[]; }; powerplus = derive2 { name="powerplus"; version="3.1"; sha256="0ayp6x34hkzgris4j3zbbs0r23n81bhww3wgfyy630ri4sk6brrn"; depends=[complexplus expm MASS Matrix phonTools]; }; - ppcSpatial = derive2 { name="ppcSpatial"; version="0.2.0"; sha256="1gi57zngc42wcrihg29nn7qa3gaq105ckp76qmczkldshlpd7x4r"; depends=[dplyr ggplot2 htmltools htmlwidgets leaflet magrittr PakPC2017 rgdal scales shiny tidyr tmap]; }; + ppcSpatial = derive2 { name="ppcSpatial"; version="0.3.0"; sha256="0dxl5vv41462vhhdvbjczcghp0rv2f2101qygn4cldfihja397y9"; depends=[dplyr ggplot2 htmltools htmlwidgets leaflet magrittr PakPC2017 scales shiny tidyr tmap]; }; ppcc = derive2 { name="ppcc"; version="1.2"; sha256="17kf97rh0b1zxh7r12rxc2qd1zlrcvlljk69k8w2jchdxiw398sb"; depends=[]; }; ppclust = derive2 { name="ppclust"; version="1.1.0"; sha256="0vmgjjy7gin88qailzfcwapndl5s8fm6i8kw9gv6aykg9mr75xlv"; depends=[inaparc MASS]; }; ppcong = derive2 { name="ppcong"; version="0.0.2"; sha256="0k34ibzyxak2a8xhsf4jdp50w8k8dsd1nn3gcdcakx8s2rgymq7v"; depends=[curl jsonlite tfse tibble]; }; @@ -14736,12 +14936,12 @@ in with self; { ppgmmga = derive2 { name="ppgmmga"; version="1.2"; sha256="1dq0p3xna5r1kiyhiziz3wc78dfqh362qhna5hmkjzhljawr9jg0"; depends=[cli crayon GA ggplot2 ggthemes mclust Rcpp RcppArmadillo]; }; ppitables = derive2 { name="ppitables"; version="0.5.4"; sha256="0hssk8yf8f15x7m03x71v9yrshrzgkww8xfacbbsw5mpqcghc9zl"; depends=[tibble tidyr]; }; ppmHR = derive2 { name="ppmHR"; version="1.0"; sha256="1fc9rrk3ir3dq5d518ih67dvknhz1ln6668wy2mzsdndaysgm12g"; depends=[nleqslv]; }; - ppmSuite = derive2 { name="ppmSuite"; version="0.3.1"; sha256="14s6nmvzcl1qnq7fihrvly6zkjnvbj4vwbcc15jj4l0nyfbrcc45"; depends=[Matrix]; }; + ppmSuite = derive2 { name="ppmSuite"; version="0.3.2"; sha256="1lks3vfn9kalyyah7ijk2mwqvlzq5ka0dsz81zbp75m739haqxrs"; depends=[Matrix]; }; ppmf = derive2 { name="ppmf"; version="0.1.3"; sha256="0xphk27frlcr87jwjbgwf77c8bhv0nswmffj9ny2vd1b176bi9xn"; depends=[censable dplyr magrittr readr rlang stringr tibble tidyr zip]; }; ppmlasso = derive2 { name="ppmlasso"; version="1.3"; sha256="1kqqb7wxqdmymfn4hkdmqakj3n64bbg2acf671asm2civ94rmc1m"; depends=[data_table lattice plyr spatstat spatstat_explore spatstat_geom spatstat_model]; }; pps = derive2 { name="pps"; version="1.0"; sha256="0k06rkzdx07qcndqym44q6xyawdd253i3kbyqlmlavadsizp657g"; depends=[]; }; ppsbm = derive2 { name="ppsbm"; version="0.2.2"; sha256="0y4whxv14jqx7mqxj7n427vpbxb5rkwj8xvx0mj4knnwy9v437z4"; depends=[clue gtools Rfast]; }; - ppseq = derive2 { name="ppseq"; version="0.2.0"; sha256="0ir5jm3cgpgcngrq334f2s66lsvhd0vxsiz5glj371slc8jxkwj6"; depends=[dplyr furrr ggplot2 patchwork plotly purrr tibble tidyr]; }; + ppseq = derive2 { name="ppseq"; version="0.2.2"; sha256="1n3ij7dl4g5ky3s52hlfcmbza0vcb6bymka6hyqhycndzws005v7"; depends=[dplyr furrr ggplot2 patchwork plotly purrr tibble tidyr]; }; ppsr = derive2 { name="ppsr"; version="0.0.2"; sha256="1dk62b08sxp87kll8wjfby3iq9l3akiprarh8agjdv6s43c9h2sg"; depends=[ggplot2 gridExtra parsnip rpart withr]; }; pqantimalarials = derive2 { name="pqantimalarials"; version="0.2"; sha256="0azxkf1rvk9cyzr4gbp4y2vcxrxw3d4f002d5gjkvv1f4kx8faw1"; depends=[plyr RColorBrewer reshape2 shiny]; }; pqrfe = derive2 { name="pqrfe"; version="1.1"; sha256="0apsrlgricjmv202yg1h3iz2715nmf05wcvyznnha0nil7cqg0qi"; depends=[MASS Rcpp RcppArmadillo]; }; @@ -14765,16 +14965,19 @@ in with self; { precondition = derive2 { name="precondition"; version="0.1.0"; sha256="0srmr33q56dimkn0m7aad19ddrp28a0dzrpnyh4hglwy9zxfqz9j"; depends=[rlang]; }; precrec = derive2 { name="precrec"; version="0.14.2"; sha256="159vxdnp7vi6na3cji1rbsr1311ciqn1aldg0nwnd6sb3hgb14w2"; depends=[assertthat data_table ggplot2 gridExtra Rcpp rlang withr]; }; predReliability = derive2 { name="predReliability"; version="0.1.0"; sha256="18s9ijg3fcg6qb0y6pnwngmv69ajm93z0xjdzkq3fp5bxk1qylyb"; depends=[cluster rpart]; }; + predRupdate = derive2 { name="predRupdate"; version="0.1.0"; sha256="0166q1lriqnl74xmawxf4fpl826dc2j8l72k6rrakwjfbdznhgjy"; depends=[ggExtra ggplot2 pROC rlang survival]; }; predfairness = derive2 { name="predfairness"; version="0.1.0"; sha256="0b9d6a2rk6vw4y5hnh721gmirnm419yynbfg7arjb96558l282kd"; depends=[]; }; predhy = derive2 { name="predhy"; version="1.2.1"; sha256="1m0c35r3h63vdimixskqviyqfblj8cxaf5b1085wb72fasanak5n"; depends=[BGLR doParallel foreach glmnet pls randomForest xgboost]; }; predhy_GUI = derive2 { name="predhy.GUI"; version="1.0"; sha256="0jxx6mqw0rll4idn92hgwqpj48kd155xl49iw3xwy33gqabg9gn7"; depends=[BGLR data_table doParallel DT foreach glmnet htmltools pls predhy randomForest shiny xgboost]; }; + predict3d = derive2 { name="predict3d"; version="0.1.4"; sha256="0pnp2p4h28mpygzg13v8g9lza0cpfhdg3m8h1ziwrkvi3bg1y97m"; depends=[dplyr ggiraphExtra ggplot2 magrittr modelr plyr prediction purrr reshape2 rgl rlang stringr tidyr]; }; predictMe = derive2 { name="predictMe"; version="0.1"; sha256="0n4sv9ahyvly17grlilybb7vwq9pzyn6mvhcn8z9cyswqa7svs49"; depends=[ggplot2 Rdpack reshape2]; }; + predictNMB = derive2 { name="predictNMB"; version="0.2.0"; sha256="06hhik21d3ah2w6jsr5qixn5mdfrcsba9dnj5hmvrfqpzpcq330k"; depends=[assertthat cutpointr dplyr ggplot2 magrittr pmsampsize rlang tibble tidyr]; }; prediction = derive2 { name="prediction"; version="0.3.14"; sha256="0awlq5lxfia6m2b91w73rksp93rbwv5gwqb36wbji4rgq41rzbrx"; depends=[data_table]; }; predictionInterval = derive2 { name="predictionInterval"; version="1.0.0"; sha256="029hc57cblfcbqckrghf95l2rkn7acgb4yr36da01bx8bmpww0bn"; depends=[ggplot2 MASS MBESS pbapply]; }; predictmeans = derive2 { name="predictmeans"; version="1.0.8"; sha256="1w5kszqqqg4xx1zq6y4a93b00aa67riqsb1dq21xqpscvyiz5nv9"; depends=[car ggplot2 HRW lme4 lmeInfo lmerTest lmeSplines MASS Matrix nlme numDeriv pbkrtest plotly plyr splines2]; }; predictoR = derive2 { name="predictoR"; version="3.0.1"; sha256="11arzdrca4jg9p25h9qfg7kkv4d3bc3qr5v41lsipgbrc9h51vdi"; depends=[colourpicker config dplyr DT echarts4r glmnet golem htmltools loadeR rlang rpart_plot shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs traineR xgboost xtable]; }; predictrace = derive2 { name="predictrace"; version="2.0.0"; sha256="1bk1l9gai4hyck72h81znsm1dzqwm5wddbz0bm9g5igs6zkar2ka"; depends=[dplyr]; }; - predicts = derive2 { name="predicts"; version="0.1-6"; sha256="061pp5kjxlbjs9adq8sxhcgsiqj78g89paa024gqrl7bv3pssk94"; depends=[terra]; }; + predicts = derive2 { name="predicts"; version="0.1-8"; sha256="1nlgb1hrsvxcbv52vf4ba61rf0ijdrr2mn1g1f2z889jslx914yy"; depends=[terra]; }; predieval = derive2 { name="predieval"; version="0.1.1"; sha256="096zfb94iixza0lfzr4p21gkcs9hl7h0d5jhbzdi3hhyz80zymrj"; depends=[ggplot2 Hmisc MASS Matching]; }; predint = derive2 { name="predint"; version="2.0.0"; sha256="18bgh6iri2s9jd981prbskp5fhcspkrmhnr25dl0rd9s0dvpx8m1"; depends=[ggplot2 lme4]; }; predkmeans = derive2 { name="predkmeans"; version="0.1.1"; sha256="0352c50zlyzn8fczrkinayllj9jp978njjl7dazzkzypx0p20va5"; depends=[e1071 maxLik mgcv Rcpp RcppArmadillo]; }; @@ -14790,13 +14993,14 @@ in with self; { prepplot = derive2 { name="prepplot"; version="1.0-1"; sha256="1x6znfhmrsb2zj2cfygsw1fdszcp4xdpaip4b4d5cdl2rykb3bjn"; depends=[plotrix shape]; }; preputils = derive2 { name="preputils"; version="1.0.3"; sha256="1ryrxmcm9vxhblk9r1vaay8ihff6nnd87dzd3375lfcla2fr9jzv"; depends=[data_table]; }; prereg = derive2 { name="prereg"; version="0.6.0"; sha256="039nrl5cirsx1ysh214dr6xnn1h6h3f90im6k9dgmzfksxdqigpw"; depends=[rmarkdown]; }; - preregr = derive2 { name="preregr"; version="0.2.8"; sha256="1z5w2bi6fvd6dxwyp5607acl0v5idj8n1r4v28iyipk6jzxv4awi"; depends=[cli jsonlite rmdpartials yaml]; }; + preregr = derive2 { name="preregr"; version="0.2.9"; sha256="011fplx40gnakallq24ak9sqvlxncpmihg474wplzppyv103pa50"; depends=[cli jsonlite rmdpartials yaml]; }; presens = derive2 { name="presens"; version="2.1.0"; sha256="175nr9pqn3m6kh9bcc1gxqmqv05xdsqdw9lx385lmm1g947d2159"; depends=[marelac measurements]; }; presenter = derive2 { name="presenter"; version="0.1.2"; sha256="1mfwpp8hd48yvadvrxz7w7spx76hb79yld7mhl6fw0mirbys98cj"; depends=[berryFunctions dplyr flextable formattable framecleaner janitor lubridate magrittr officer openxlsx purrr randomcoloR rlang rvg stringi stringr tibble tidyr tidyselect]; }; presentes = derive2 { name="presentes"; version="0.1.0"; sha256="0d6zhishc7wxcvvglgw44pc6c172qpxb8i4iw3lqbmji7ash5zpx"; depends=[]; }; preseqR = derive2 { name="preseqR"; version="4.0.0"; sha256="1g2rnnmi45649vpy6z45v5i3wxm54s138ajqrzwi3a5r7x3xnhq1"; depends=[polynom]; }; presize = derive2 { name="presize"; version="0.3.7"; sha256="1qabv7lsrd0rrjkg7icr7qxj4jrx78s6rh1n961s6qrw6gldq4ga"; depends=[kappaSize shiny]; }; presmTP = derive2 { name="presmTP"; version="1.1.0"; sha256="134p58zzk8i0whscvl5qdfn4niksypyxavq1m15cvw4zzk4dk6fw"; depends=[mgcv survPresmooth]; }; + pressuRe = derive2 { name="pressuRe"; version="0.1.0"; sha256="0mr07nh8c411spc2ckl2gcdyfa1zivhypybbp4j8ip0hva3gydw6"; depends=[dplyr ggmap ggplot2 magick magrittr pracma readxl scales sf stringr zoo]; }; prettifyAddins = derive2 { name="prettifyAddins"; version="2.5.0"; sha256="11vb38h934f8kgmaf8vnp7pwm7nq4j8amshq9l0i01kkn9sfmpqq"; depends=[httr rstudioapi shiny webdriver xml2 XRJulia]; }; prettyB = derive2 { name="prettyB"; version="0.2.2"; sha256="1wszcmn5jnk02iyvjld42291m1irfp9m0b3lcdyyp41iq3icm67g"; depends=[]; }; prettyGraphs = derive2 { name="prettyGraphs"; version="2.1.6"; sha256="0yjpwxdy9mkj2k33zvd5klyv4ava46i19yls87n0bvf79y90ikpy"; depends=[]; }; @@ -14806,7 +15010,7 @@ in with self; { prettyglm = derive2 { name="prettyglm"; version="1.0.0"; sha256="1ccq5l3m4q1h44pdgk00avch0kldr00632n681dlw8wkdgb0x8wf"; depends=[broom car dplyr forcats kableExtra knitr plotly RColorBrewer stringr tibble tidycat tidyr tidyselect vip]; }; prettymapr = derive2 { name="prettymapr"; version="0.2.4"; sha256="1fg2j6qx828qrg46clrvln2004nlk22yx7wvhr8vig66nc1lm7bd"; depends=[digest httr plyr rjson]; }; prettyunits = derive2 { name="prettyunits"; version="1.1.1"; sha256="1ibmzgknw5896q2i6r59jz2izblxwgb29ivvjzx50pkd1jl9l6cs"; depends=[]; }; - prevR = derive2 { name="prevR"; version="4.0.1"; sha256="0r70ns7qg72bva712pqw3djp0lzz8bpm00d9s3q9qm30lhgcl124"; depends=[directlabels fields foreign ggplot2 gstat KernSmooth maptools rgdal sp]; }; + prevR = derive2 { name="prevR"; version="5.0.0"; sha256="17sygcfj29cvycsi1d2870gwcqq1ij6gppsqj46phc04r8q5hs5v"; depends=[directlabels fields foreign ggplot2 gstat KernSmooth sf stars]; }; prevalence = derive2 { name="prevalence"; version="0.4.1"; sha256="0llxcz7bg62l6qq4xaf2xwmc2k0y2l3zw5nb6bq0a9qnp3anj8ah"; depends=[coda rjags]; }; prevederer = derive2 { name="prevederer"; version="0.0.1"; sha256="0vkx9nrlgp36xbl95lrb5sb5yivxlcw4yvbs8hgbm31kh0vbz32f"; depends=[httr]; }; previsionio = derive2 { name="previsionio"; version="11.7.0"; sha256="08hrklr3ngphdhp50lkz6ls9nn1bzdvs6xj583spsw4vm7j44yfr"; depends=[data_table futile_logger httr jsonlite magrittr Metrics plotly XML]; }; @@ -14825,9 +15029,9 @@ in with self; { prinvars = derive2 { name="prinvars"; version="1.0.0"; sha256="10cxp5dqjmi0kbx8g2qvpvwv2lcdg4sd2njg81l9g8dphx0c662f"; depends=[elasticnet PMA Rdpack]; }; prioGene = derive2 { name="prioGene"; version="1.0.1"; sha256="0k1rlvmfhj1m2zp5zaac8wcwjypd6f4dd8fxxsyrzsafp9aw189l"; depends=[AnnotationDbi org_Hs_eg_db]; }; prioriactions = derive2 { name="prioriactions"; version="0.4.2"; sha256="0zrhpcdaakvc8706psqmp2y26nxyqr17l16wknb10clvh37d4r1b"; depends=[assertthat BH dplyr magrittr Matrix proto Rcpp RcppArmadillo rlang tidyr]; }; - prioritizr = derive2 { name="prioritizr"; version="8.0.0"; sha256="02mrrmhs72lp44dbzsj0snnqlkclync430bvznsw4401fgg8r7g5"; depends=[ape assertthat BH cli exactextractr igraph magrittr Matrix R6 raster Rcpp RcppArmadillo rlang sf slam terra tibble withr]; }; - prioritizrdata = derive2 { name="prioritizrdata"; version="0.2.4"; sha256="0027nbkvp8b2w4cciabiqjdyxhjwh47k7dc36p79mkqfarh04rgv"; depends=[raster sp]; }; - prioritylasso = derive2 { name="prioritylasso"; version="0.3.0"; sha256="05wfyzjx76b6a68fdbl16h88qnxi0gspdwjszpcy9d4a9jcy7i94"; depends=[checkmate glmnet survival]; }; + prioritizr = derive2 { name="prioritizr"; version="8.0.2"; sha256="1i3ckbjkabwi7gyjlgdvl0hrmvb8ww0641kp58p5p9r71sykfzhp"; depends=[ape assertthat BH cli exactextractr igraph magrittr Matrix R6 raster Rcpp RcppArmadillo rlang sf slam terra tibble withr]; }; + prioritizrdata = derive2 { name="prioritizrdata"; version="0.3.2"; sha256="0dvxh43dk9mhsqdj89zilh3r91cqngl07ggw5r5rj761xl3km10w"; depends=[sf terra tibble]; }; + prioritylasso = derive2 { name="prioritylasso"; version="0.3.1"; sha256="1vn4i7rg1nsir98lgaxnw4851rwyv8kx25z8nc942qsr3r7cvdf6"; depends=[checkmate glmnet survival]; }; prism = derive2 { name="prism"; version="0.2.0"; sha256="0gl6qmpgfdxn90aw10z4xj4ijcwj9mr0s9ahm28niinr9y89gzxk"; depends=[dplyr ggplot2 httr lubridate magrittr purrr raster readr stringr]; }; prismadiagramR = derive2 { name="prismadiagramR"; version="1.0.0"; sha256="13x3y4rv9b2d013jd6853zkq8rbxq88wlffmdnjs1rca0fnfrn4f"; depends=[DiagrammeR dplyr]; }; prismatic = derive2 { name="prismatic"; version="1.1.1"; sha256="013i0mq4n8s2zbzvfrz1vjcn2a6l98bamslkcv1a3cn70gpphja9"; depends=[farver]; }; @@ -14843,10 +15047,10 @@ in with self; { proceduralnames = derive2 { name="proceduralnames"; version="0.2.2"; sha256="1jdaizvsmw1ipbjm2qbgfvnkaz68zga7i8lp7yjf5rfzjvfi1hwq"; depends=[]; }; processanimateR = derive2 { name="processanimateR"; version="1.0.5"; sha256="054m578ifb4hhlalijkdmjxifn36vy61sdzjgcr1gg4yxfi2fbx3"; depends=[bupaR DiagrammeR dplyr htmltools htmlwidgets magrittr processmapR rlang stringr tidyr]; }; processcheckR = derive2 { name="processcheckR"; version="0.1.4"; sha256="1qsmklvlldjw29f10pxn5455xp6nql3qkxm2yak367q4a3z069x6"; depends=[bupaR dplyr edeaR glue lifecycle rlang stringi stringr tidyr]; }; - processmapR = derive2 { name="processmapR"; version="0.5.2"; sha256="0ryvcby7khc4yzv64qv2b5s5ykllniar8b0gyzph7fs6dg8i5wgw"; depends=[BH bupaR cli data_table DiagrammeR dplyr edeaR forcats ggplot2 glue hms htmltools lifecycle miniUI plotly purrr Rcpp rlang scales shiny stringr tidyr]; }; + processmapR = derive2 { name="processmapR"; version="0.5.3"; sha256="1q3zppi2hmvqaydwyjyann1zajvk19rww0mj4ra7kj20icg8520h"; depends=[BH bupaR cli data_table DiagrammeR dplyr edeaR forcats ggplot2 glue hms htmltools lifecycle miniUI plotly purrr Rcpp rlang scales shiny stringr tidyr]; }; processmonitR = derive2 { name="processmonitR"; version="0.1.0"; sha256="1ckr438yifpsh095j6bb65dq3rdm7cfm8k7qsjmcqwjkww4j74z8"; depends=[bupaR dplyr edeaR ggplot2 magrittr miniUI shiny]; }; processpredictR = derive2 { name="processpredictR"; version="0.1.0"; sha256="161gbyq21j5yip5p8p235mvcffchm7c8ksks1z7q5cwbrilcx380"; depends=[bupaR cli data_table dplyr edeaR forcats ggplot2 glue keras magrittr mltools plotly progress purrr reticulate rlang stringr tensorflow tidyr tidyselect]; }; - processx = derive2 { name="processx"; version="3.8.0"; sha256="02zviyqk1ljvrdc3bgqxnkyb8mkmqlgmq6l0c881a523dk9djw4j"; depends=[ps R6]; }; + processx = derive2 { name="processx"; version="3.8.1"; sha256="0g79k7zfjhqdhk4crj245smrckwlbs7dazdslhvimjnlh4mlf270"; depends=[ps R6]; }; procmaps = derive2 { name="procmaps"; version="0.0.5"; sha256="0c5cby1942s9vdl0a6nyiih6x7kxii02w2l4fp8n9z07h7j5jb69"; depends=[]; }; prodest = derive2 { name="prodest"; version="1.0.1"; sha256="16nqgd9wrjfxymwbxrnlak54cagbv3fxgbql0w5bxnmyrbbqy509"; depends=[AER DEoptim dplyr Matrix Rsolnp]; }; prodigenr = derive2 { name="prodigenr"; version="0.6.2"; sha256="07r6xiqany2qzarfqphs90pcwx7zbki0z7mp329l7szfz01wxiqr"; depends=[cli fs rlang rmarkdown rprojroot whisker withr]; }; @@ -14862,7 +15066,7 @@ in with self; { profoc = derive2 { name="profoc"; version="1.1.1"; sha256="1lybn7h6q2br4vkaz85f99rhacryx0r2v9sfy87r8c25lh5d4kr5"; depends=[abind lifecycle Matrix Rcpp RcppArmadillo RcppProgress splines2]; }; profr = derive2 { name="profr"; version="0.3.3"; sha256="00bv1q0qn46nz4zjfs0l2yfh3hk71rajlp2rrlwg442z11k79ap9"; depends=[plyr stringr]; }; proftools = derive2 { name="proftools"; version="0.99-3"; sha256="095pxyyv6k818qwcjygbz1h24k0xkqi1agns8cqh2m5g64aynd70"; depends=[]; }; - profvis = derive2 { name="profvis"; version="0.3.7"; sha256="1f86m426pcf90l29hf4hkirzf8f38dihk52bxbdq2gvrrdili5s3"; depends=[htmlwidgets stringr]; }; + profvis = derive2 { name="profvis"; version="0.3.8"; sha256="1cmlcp91q8v0550iay9vsw5wllb6w2ldy6k99rb76ylhr5dwf0pc"; depends=[htmlwidgets purrr rlang stringr vctrs]; }; progenyClust = derive2 { name="progenyClust"; version="1.2"; sha256="0azp5pvk316s8xbawcqwqfd80fxb4xn8hc6aq87xwksc6fhwp94l"; depends=[Hmisc]; }; progress = derive2 { name="progress"; version="1.2.2"; sha256="0dgzb362641aqm8xd88iqa8jmpdm43xs0aba0d5kk6fvapnxi95l"; depends=[crayon hms prettyunits R6]; }; progressr = derive2 { name="progressr"; version="0.13.0"; sha256="1qd4yn6hhqxjpd7ckkrrqcpmx9ha01fy1y8gmldikk70vp53vyqg"; depends=[digest]; }; @@ -14871,7 +15075,7 @@ in with self; { projects = derive2 { name="projects"; version="2.1.3"; sha256="0ljrhswr5sfq051x0aicl9yvwakw9d9drgrmcz9d8qhgw1if0mky"; depends=[dplyr fs lubridate magrittr purrr readr rlang rstudioapi sessioninfo stringr tibble vctrs zip]; }; projmgr = derive2 { name="projmgr"; version="0.1.0"; sha256="1iysxcl6awvp7zbm04zyq4d9659fcz3sy711jnycsxhsk8hsvmc2"; depends=[gh magrittr]; }; projpred = derive2 { name="projpred"; version="2.5.0"; sha256="0faf0hq5kvibqyzgqqz2sdqms8g3vvxy6calpm6d2wzmbczi5v5n"; depends=[abind gamm4 ggplot2 lme4 loo MASS mclogit mgcv mvtnorm nnet ordinal Rcpp RcppArmadillo rstantools ucminf]; }; - prolific_api = derive2 { name="prolific.api"; version="0.5"; sha256="0lnxkap6x4x5wvayfx1lm4h646wb0wsffn7xysrcysfdsaxa817d"; depends=[data_table jsonlite]; }; + prolific_api = derive2 { name="prolific.api"; version="0.5.1"; sha256="04maca0pm5jkajafb7bc1qqlapawbbnsmml97xnwvdmi11hb9zsa"; depends=[data_table jsonlite]; }; prome = derive2 { name="prome"; version="1.5.6.70"; sha256="0hhrrw06jd3qsq9ch8k5cv4p510kp2xkyd8dh6l7zw056cnjmac0"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; promethee123 = derive2 { name="promethee123"; version="0.1.0"; sha256="0s1wkcrvm32dpqg9ahn10kni1xv3ll7akqz4y6yn1d36km81bf21"; depends=[cowplot ggplot2]; }; promises = derive2 { name="promises"; version="1.2.0.1"; sha256="1dy4cbqw17awh4q8m7cy3anaj0n9iynabfzflb1g94cyj0bq4fld"; depends=[later magrittr R6 Rcpp rlang]; }; @@ -14913,21 +15117,22 @@ in with self; { proxy = derive2 { name="proxy"; version="0.4-27"; sha256="0gsng2aggnljl4z82la9hpnd26hngzhj8fizx4wx22npqjj93694"; depends=[]; }; proxyC = derive2 { name="proxyC"; version="0.3.3"; sha256="00p3604ny6qax5rr1865c27hfp90v2vga0xcrp3bb81xcfadl99y"; depends=[Matrix Rcpp RcppArmadillo RcppParallel]; }; prozor = derive2 { name="prozor"; version="0.3.1"; sha256="0gcjfjsvj2pjp9ih7nxvs9gfj5b94g8d3ziaz16wfbnjqm4a38lp"; depends=[AhoCorasickTrie docopt dplyr Matrix purrr readr rlang seqinr stringr]; }; - prqlr = derive2 { name="prqlr"; version="0.3.0"; sha256="0ysb4z6xvsap30wvigs9syr11h6nd7vvzcv04dch2sj7xc269vhv"; depends=[]; }; + prqlr = derive2 { name="prqlr"; version="0.4.0"; sha256="0p25wrbb4gmgwr7afismlsgyly283zn1xfbqy218r1ia79hzs3b0"; depends=[]; }; prrd = derive2 { name="prrd"; version="0.0.5"; sha256="0ig3k1l2md6hzb5asv277ylg0k9a1rkcrbs8d8h4f07pxykhmivf"; depends=[config crayon data_table DBI liteq RSQLite]; }; - prt = derive2 { name="prt"; version="0.1.5"; sha256="0xby77mcmz3if93wnmzx8il0h3bphdfqzjxhnhyihzgf0j3fjlci"; depends=[assertthat backports cli crayon data_table fansi fst pillar rlang tibble vctrs]; }; + prt = derive2 { name="prt"; version="0.2.0"; sha256="02f75a9ici0a7fm08r0dhykf73jpixg5cm8ym2z18dhghas4zly4"; depends=[assertthat backports cli crayon data_table fst pillar rlang tibble vctrs]; }; pryr = derive2 { name="pryr"; version="0.1.6"; sha256="013p2xxd51kr9ddx051cvn45mzgj44fm47nkchdb13l0885a7hb8"; depends=[codetools lobstr Rcpp stringr]; }; - ps = derive2 { name="ps"; version="1.7.4"; sha256="1lfpdlwj6g8mgl233r6ks0rcqq4zaj31br7hrx8mb7w0iyi6w0rf"; depends=[]; }; + ps = derive2 { name="ps"; version="1.7.5"; sha256="0knblkdrdqbmcv9zmp5096k4vfvvbjzl6zizjyabk5spqpikmg0s"; depends=[]; }; psData = derive2 { name="psData"; version="0.2.2"; sha256="013hb6lk9rm2w08m5jbw90ndrcd4wyy2h125jx07c9bs60wh4mp4"; depends=[countrycode DataCombine reshape2 rio xlsx]; }; psSubpathway = derive2 { name="psSubpathway"; version="0.1.1"; sha256="1jzymhh1dy5w735fppqza7ilspsvyidkrdpq2yd3j5xfjckzfh5w"; depends=[GSVA igraph mpmi pheatmap]; }; psbcGroup = derive2 { name="psbcGroup"; version="1.5"; sha256="01q02lsjjj14b8si9pj12a5cvyq74lb9444vpwpxkbnsznx10bsy"; depends=[LearnBayes mvtnorm SuppDists survival]; }; psborrow = derive2 { name="psborrow"; version="0.2.1"; sha256="0m2jcf5awlwkzscsps0fczpaflxzi0w6m9qxlzm7abip277lhgpd"; depends=[data_table doParallel dplyr foreach futile_logger ggplot2 MatchIt mvtnorm rjags survival]; }; - pscl = derive2 { name="pscl"; version="1.5.5"; sha256="0vzf5wazs92bhqhqd66v3vwmbfmnh67gb2466g1xxawim649nk05"; depends=[MASS]; }; + pscl = derive2 { name="pscl"; version="1.5.5.1"; sha256="0nwdwyxmy4baiwjjvrypdclzhpbsipik1rkrvgag4y2csg1nf4v1"; depends=[MASS]; }; pscore = derive2 { name="pscore"; version="0.4.0"; sha256="0flzqr9x0z2mjnbm5cjm8hqndkbv2yp11agkx89mbaafsg0hmjn1"; depends=[ggplot2 JWileymisc lavaan reshape2]; }; psd = derive2 { name="psd"; version="2.1.1"; sha256="1c9kq5g2p4iy1jdc9fhfs1v0hcnc8cbrpvafdpy3l4n9m66hahky"; depends=[RColorBrewer Rcpp RcppArmadillo]; }; psda = derive2 { name="psda"; version="1.4.0"; sha256="0if42szf0gkgdl7d02x43i0fdb6hp47j918vx06aw7qcw6a8j3k2"; depends=[ggplot2 plyr raster rgeos sp]; }; psdr = derive2 { name="psdr"; version="1.0.1"; sha256="02ypgi1gxnp0mn9p1w2j34ypnpbkrwp9i0ma0i7657zddcfnf391"; depends=[devtools ggplot2 qpdf]; }; pseudo = derive2 { name="pseudo"; version="1.4.3"; sha256="0ccf3gz2g7g5y4acpj2qnb39hrghhdganizlddg6rx7al869fffs"; depends=[geepack KMsurv]; }; + pseudohouseholds = derive2 { name="pseudohouseholds"; version="0.1.0"; sha256="0gliz6wv2da9sgyqd38sa1jaqmqii0gpqsg2ak9c91v24fa0qf5l"; depends=[dplyr furrr sf]; }; pseudorank = derive2 { name="pseudorank"; version="1.0.1"; sha256="1hjcvl38di1digkqg7nysd7bkljz1v7y54z2rz10fyk9lyp9mpmy"; depends=[doBy Rcpp]; }; pseval = derive2 { name="pseval"; version="1.3.1"; sha256="1jgnv1l9adhwrmkmp6wkzz7jf7w1hyqy47ajr29l21p4g037py45"; depends=[survival]; }; psfmi = derive2 { name="psfmi"; version="1.1.0"; sha256="1f5781j676cf0wvybyxh4rylzawfh949gndqfpcdl3kql1bd2215"; depends=[car cvAUC dplyr ggplot2 lme4 magrittr mice mitml mitools norm pROC purrr ResourceSelection rms rsample stringr survival tibble tidyr]; }; @@ -14938,7 +15143,7 @@ in with self; { pso = derive2 { name="pso"; version="1.0.4"; sha256="0dq02pv86iwxpvd8wfbryxfsxqrrw4991iim60nyh8mn02gflkmi"; depends=[]; }; psoptim = derive2 { name="psoptim"; version="1.0"; sha256="1yziabkd3h05cfl5jy5l8ji2y3w21acvxsq3inxyh0iwyr8qdkkl"; depends=[]; }; psp = derive2 { name="psp"; version="0.1"; sha256="0ls8nqfddl9yqsz6binjf5smg3vbs5r65dqv92zn6hmb51akf7q5"; depends=[]; }; - pspatreg = derive2 { name="pspatreg"; version="1.0.7"; sha256="1913zd67cmcrr8vm13zh7cq9nr9hhlybm5bicsv6z09nmsq47m7w"; depends=[AmesHousing dplyr fields ggplot2 MASS Matrix MBA minqa numDeriv plm Rdpack sf spatialreg spdep stringr]; }; + pspatreg = derive2 { name="pspatreg"; version="1.1.0"; sha256="1gf00i605fss6xn0gyk7y2cqpihmqm4klqd1z1pdxqq41cg8r34s"; depends=[AmesHousing dplyr fields ggplot2 MASS Matrix MBA minqa numDeriv plm Rdpack sf spatialreg spdep stringr]; }; pspearman = derive2 { name="pspearman"; version="0.3-1"; sha256="09l3knwaj4xs9dfz1xcj4mbynd4w1vxcgmzfqxz97czzbf7ingwh"; depends=[]; }; pspline = derive2 { name="pspline"; version="1.0-19"; sha256="0h7y9l64knx291ms5mlc65dl3ljzgmrfzdqk1rd7iy8x7wcvymds"; depends=[]; }; pspline_inference = derive2 { name="pspline.inference"; version="1.0.4"; sha256="1ijz642igm27xg3928w9ffvykai26aar5awbcilrjbkm6fk7yd4w"; depends=[assertthat dplyr magrittr mgcv plotrix plyr reshape2 rlang]; }; @@ -14990,7 +15195,7 @@ in with self; { pulseTD = derive2 { name="pulseTD"; version="0.1.0"; sha256="0sdnswinpnm0vvplrh5gl9gx4p03dx175mqxzg5r52rkzd3rfbsr"; depends=[AnnotationDbi Biobase GenomicAlignments GenomicFeatures ggplot2 Rsamtools S4Vectors SummarizedExperiment]; }; pumilioR = derive2 { name="pumilioR"; version="1.3.1"; sha256="1791r5lkr6hafd2rz9f9nfy5vc03c4833f292khvd2cg43sb0bfc"; depends=[RCurl XML]; }; puniform = derive2 { name="puniform"; version="0.2.5"; sha256="1zw8qbqnyhyvzrw6izrqgnmbawcqg2jdhcb8lxs1rd8y7cn4v4wj"; depends=[ADGofTest metafor Rcpp RcppArmadillo]; }; - pureseqtmr = derive2 { name="pureseqtmr"; version="1.2"; sha256="1c2pcci3s949hi8hh0h03mr3m6qw3kvihfglwavx578kjm2qw0xz"; depends=[ggplot2 plyr rappdirs stringr tibble]; }; + pureseqtmr = derive2 { name="pureseqtmr"; version="1.4"; sha256="105v0ydl458xzgkdas7m8llf0672s9klv816sjl27dy0a3k8163f"; depends=[data_table devtools dplyr ggplot2 Peptides plyr rappdirs Rcpp readr stringr tibble]; }; purge = derive2 { name="purge"; version="0.2.1"; sha256="1faf8mkaxsnj63wnig5rs50hd3j6vzaj0xkdz8kn0j7y2vvshp9p"; depends=[]; }; purgeR = derive2 { name="purgeR"; version="1.7"; sha256="0jcvfrgm7b85xf1lqjnidxrp0dmnqk8pjg2sj581jmkimrpf6cad"; depends=[doSNOW foreach progress Rcpp RcppProgress]; }; purging = derive2 { name="purging"; version="1.0.0"; sha256="1b8f87jn6wyh4fp6b1660bd484wcf7xiajdg9dz2594aj1r94qsr"; depends=[MASS]; }; @@ -15013,7 +15218,7 @@ in with self; { pwrAB = derive2 { name="pwrAB"; version="0.1.0"; sha256="0ifyw40m9gsijw3vm9qb8qk4yydmdixfdpdp45x2hk93j8v61jm1"; depends=[]; }; pwrFDR = derive2 { name="pwrFDR"; version="2.8.9"; sha256="16qlxwhljhf878a7jif2kjj7hvga01bgr8zb6bh555yacxxh4yiz"; depends=[]; }; pwrRasch = derive2 { name="pwrRasch"; version="0.1-2"; sha256="13fr4yfk8aky1vv36pllx673l4lg9q7i661vbyn2zabyizd2rw3b"; depends=[]; }; - pwrss = derive2 { name="pwrss"; version="0.3.0"; sha256="12nwi2k5bkra5rzjlzfrhiz15dilb770fqfg0fp0gkg9ib5drrrc"; depends=[]; }; + pwrss = derive2 { name="pwrss"; version="0.3.1"; sha256="1qi2k0bk47yaqyzc6zv714ggs7s17zifazpsidfbfhikb5cs4gba"; depends=[]; }; pwt = derive2 { name="pwt"; version="7.1-1"; sha256="0926viwmwldmzlzbnjfijh00wrhgb0h4h0mlrls71pi5pjfldifa"; depends=[]; }; pwt10 = derive2 { name="pwt10"; version="10.01-0"; sha256="156w50zhkbbdlxmwsdkiw89240xbhq6wmagashz94z798s5ssisv"; depends=[]; }; pwt8 = derive2 { name="pwt8"; version="8.1-1"; sha256="1iig0x90ilzh3hdki0h33qgrra8r94rw4bk1x8y7i6c1may8y0v6"; depends=[]; }; @@ -15021,6 +15226,7 @@ in with self; { pxR = derive2 { name="pxR"; version="0.42.7"; sha256="05i1cg35hq0z37xnh2qfcp8mnrphadrg7av5d0mcgi9nx6c1w80j"; depends=[plyr reshape2 RJSONIO stringr]; }; pxweb = derive2 { name="pxweb"; version="0.16.2"; sha256="08lwi9adf5wavpc2cbqgyyf3cygih79wkrzf2naydnlf8xn3jcm4"; depends=[checkmate httr jsonlite]; }; pyMTurkR = derive2 { name="pyMTurkR"; version="1.1.5"; sha256="1b1cbvjbnvw2h8l3lbm0ma80zgpm212wzfhyyr6dr115k237xy89"; depends=[curl reticulate XML]; }; + pycno = derive2 { name="pycno"; version="1.3"; sha256="1a7a1cy75vrbyaziw9kywallxg6mxcxj4pz4haa66fcjqv5cqmxa"; depends=[maptools rgeos sp]; }; pyinit = derive2 { name="pyinit"; version="1.1.3"; sha256="0cbwip549d17ysbk4lrvn6a25vfjjnimjsd5myvnbvg8c9nq5ryn"; depends=[robustbase]; }; pylintR = derive2 { name="pylintR"; version="0.1.0"; sha256="00k9p3igdxhyx353gq8j9mnhrs9fh0j4q2iqa2ljfjdsdw1r2asr"; depends=[fansi htmlwidgets rstudioapi]; }; pyramid = derive2 { name="pyramid"; version="1.5"; sha256="0lakn9knmhqvhrp98sc3hhwd4bilpplxbr5j9bv8w6li0qd3d04a"; depends=[]; }; @@ -15047,19 +15253,19 @@ in with self; { qcpm = derive2 { name="qcpm"; version="0.2"; sha256="0k440xi951v6jaknwz0x0rwkin1r034l2i93cchlglf0r9a0l8yc"; depends=[broom cSEM quantreg]; }; qcr = derive2 { name="qcr"; version="1.4"; sha256="14nilw60p2kcabh9w5k8bvdjqx4lm5lj79qiigg3i372byq5gb7r"; depends=[fda_usc MASS mvtnorm qcc]; }; qcv = derive2 { name="qcv"; version="1.0"; sha256="0hf02l9c1cpzs02mfn9swfc8l635qsvh6xrhj21g19h5rxaf8jwg"; depends=[]; }; - qdap = derive2 { name="qdap"; version="2.4.3"; sha256="1fadzq7afavxfhcd8q6xy3g8d7jwy24zz1da2ig9bd8vrk5zjmnx"; depends=[chron dplyr gender ggplot2 gridExtra igraph NLP openNLP openxlsx plotrix qdapDictionaries qdapRegex qdapTools RColorBrewer RCurl reshape2 scales stringdist tidyr tm venneuler wordcloud XML]; }; + qdap = derive2 { name="qdap"; version="2.4.6"; sha256="1dr48b0187w003v98qckzi4zxb6r0yi3jh8f6krknv4c4qasfn9n"; depends=[chron dplyr gender ggplot2 gridExtra igraph NLP openNLP openxlsx plotrix qdapDictionaries qdapRegex qdapTools RColorBrewer RCurl reshape2 scales stringdist tidyr tm venneuler wordcloud XML]; }; qdapDictionaries = derive2 { name="qdapDictionaries"; version="1.0.7"; sha256="0jdx7bxmvc4p41jb4fhaagg5jsbsi7gva870cmyia72li52grhyn"; depends=[]; }; qdapRegex = derive2 { name="qdapRegex"; version="0.7.5"; sha256="1hdilycwrvi0q6cx7k8vg87bamm2xsafjkya5x4smxysm5k1r4qb"; depends=[stringi]; }; - qdapTools = derive2 { name="qdapTools"; version="1.3.5"; sha256="09byvv39qmdcavlykpcvk248l2f7sw0pq64ynq2xffmnga3ji24c"; depends=[chron data_table RCurl XML]; }; + qdapTools = derive2 { name="qdapTools"; version="1.3.7"; sha256="1cf42lxzqha2ah0yjl144pch50imfr5rf6g0b59xr5jf9x96dsjp"; depends=[chron data_table RCurl XML]; }; qdm = derive2 { name="qdm"; version="0.1-0"; sha256="0cfxyy8s5zfb7867f9xv9scq9blq2qnw68x66m7y7nqlrrff5xdr"; depends=[]; }; - qfa = derive2 { name="qfa"; version="1.2"; sha256="1pn63b8qr36il1lhq4cr6qjv8xz8z7m1i5sg76hg2dblz4zsaa2s"; depends=[colorRamps doParallel fields foreach mgcv nlme quantreg RhpcBLASctl]; }; + qfa = derive2 { name="qfa"; version="2.0"; sha256="0cvqgirfndwwlwpsqamhz9jmq8nqhaak1z908bw567h7l0skxc60"; depends=[colorRamps doParallel fields foreach MASS mgcv nlme quantreg RhpcBLASctl]; }; qfasar = derive2 { name="qfasar"; version="1.2.1"; sha256="14370bmq4qx5j02va13wz52m2lgl4vb992p9587z9v2sxl1v4jjg"; depends=[Rsolnp]; }; qfratio = derive2 { name="qfratio"; version="1.0.1"; sha256="09cvayyryfll9zmwnlc9rcyc5p6hs4cmcv04hq9cs0pcx4n075j6"; depends=[MASS Rcpp RcppEigen]; }; qgam = derive2 { name="qgam"; version="1.3.4"; sha256="1jyamamdffaks89rspyhmg18b4iik0nb1j0vgqzvfnm890514cvn"; depends=[doParallel mgcv plyr shiny]; }; qgcomp = derive2 { name="qgcomp"; version="2.10.1"; sha256="0cdrb794j9wkfs80r98jbi21g21l3fm754cy364a00zzqd1f5jq3"; depends=[arm future future_apply generics ggplot2 gridExtra pscl survival tibble]; }; qgcompint = derive2 { name="qgcompint"; version="0.7.0"; sha256="0v2b7rr6m5mx3wyclbryxlcdly1a2vj8z0ywsyq4vvj66g2aa0yk"; depends=[arm future future_apply ggplot2 gridExtra qgcomp survival]; }; qgg = derive2 { name="qgg"; version="1.1.1"; sha256="11ijkr67d2b2avd0slw6cfsdhq3v10xyc36b01fj1s1whpm8vrvw"; depends=[data_table MASS MCMCpack Rcpp RcppArmadillo statmod]; }; - qgraph = derive2 { name="qgraph"; version="1.9.4"; sha256="12rn3jxy4g248cg6323m1zbmazq8ffjp0ywinnq57rwnz1bva434"; depends=[abind colorspace corpcor fdrtool ggplot2 glasso gtools Hmisc igraph jpeg lavaan Matrix pbapply plyr png psych Rcpp reshape2]; }; + qgraph = derive2 { name="qgraph"; version="1.9.5"; sha256="1mi19bjx83zb42wmgb716a3l4gvwch3rmybdqmm8k3dl8xr2qnjc"; depends=[abind colorspace corpcor fdrtool ggplot2 glasso gtools Hmisc igraph jpeg lavaan Matrix pbapply plyr png psych Rcpp reshape2]; }; qgshiny = derive2 { name="qgshiny"; version="0.1.0"; sha256="0ydhwg4abn8n9pwnjnwf1n1k854zw31z8f2splzdm5j279lsjg3r"; depends=[rmarkdown shiny]; }; qgtools = derive2 { name="qgtools"; version="2.0"; sha256="1gj7vbam53yr2rnxzfxng1p107bjcyjmyj47cxyzaiv19pznkbmw"; depends=[]; }; qha = derive2 { name="qha"; version="0.0.8"; sha256="0sdf6g6884wn73i237xkwszg2mq8xddhvyy225qzpplh5za4pnhl"; depends=[ade4 FactoClass FactoMineR]; }; @@ -15069,8 +15275,8 @@ in with self; { qiitr = derive2 { name="qiitr"; version="0.1.1"; sha256="0qbqx7g4np2ygyxiqmq5cww1az6ijjx6na6b1mp4ywmyxkjg3k29"; depends=[httr jsonlite purrr rstudioapi]; }; qkerntool = derive2 { name="qkerntool"; version="1.19"; sha256="14inry2hqvkmy0y2y3cl75ri4vri0hirv98gw2rymny69lia5x0s"; depends=[class]; }; qlcMatrix = derive2 { name="qlcMatrix"; version="0.9.7"; sha256="0iqkcvvy8rxlk0s83sjq57dd6fadb18p5z31lzy0gnzv1hsy1x8y"; depends=[docopt Matrix slam sparsesvd]; }; - qlcal = derive2 { name="qlcal"; version="0.0.4"; sha256="11smsvbrdn2arlj8z54nwb667dgqsr3xmyfbywl8s93101pxbjsx"; depends=[BH Rcpp]; }; - qlifetable = derive2 { name="qlifetable"; version="0.0.1-13"; sha256="11mk73bawdklc72yf3ihf94k89fya5m8dhvqrxadyapxmyzn7qgx"; depends=[]; }; + qlcal = derive2 { name="qlcal"; version="0.0.6"; sha256="1mj34m1fp58s3kchav4g04y48aw3d175jry1cyqpr593x9nh6bi4"; depends=[BH Rcpp]; }; + qlifetable = derive2 { name="qlifetable"; version="0.0.1-15"; sha256="0mqwlvkrd3sfnjx3vwc1pr6wzjwk7gz6mgmakxhh6gbh0v3swf0d"; depends=[]; }; qmap = derive2 { name="qmap"; version="1.0-4"; sha256="02xvq1mw83gln7phacbi3vhkvb100crggbldv13mhwq3wjnmg5k2"; depends=[fitdistrplus]; }; qmd = derive2 { name="qmd"; version="1.1.2"; sha256="15y1bivli3jy09l4j37zp327x1nchkg6qm8hs46srcxznh9zb99d"; depends=[cowplot dplyr ggplot2 qad Rcpp]; }; qmethod = derive2 { name="qmethod"; version="1.8.4"; sha256="0smkqqq8pcxix4lf35skkf9p5jw9mc3llkmyr334qkk85kvgnwn6"; depends=[digest knitr psych xtable]; }; @@ -15082,7 +15288,7 @@ in with self; { qpdf = derive2 { name="qpdf"; version="1.3.2"; sha256="0xp9x11jpih59s0skfswi5chmv1p8zhz4f66w0nxfx4jhyj0bjfr"; depends=[askpass curl Rcpp]; }; qpmadr = derive2 { name="qpmadr"; version="1.1.0-0"; sha256="0krv3zhr42z2mkkbn2bkglzfxbf06dmd9vnnc3rcyhm1r85n4fbq"; depends=[checkmate Rcpp RcppEigen]; }; qqboxplot = derive2 { name="qqboxplot"; version="0.3.0"; sha256="1rsipw7cn2gqpqpa0ysj99ms5jpnbynjs4gkkmbr2w0c2466fhgx"; depends=[ggplot2]; }; - qqconf = derive2 { name="qqconf"; version="1.3.1"; sha256="1vvw79l8nqpqvmfpff5khgdjbs1s2q5ylg72lvkihd2qfk0d8cf5"; depends=[MASS Rcpp robustbase]; }; + qqconf = derive2 { name="qqconf"; version="1.3.2"; sha256="18wfvljd6gbf9am3hh14fgp06gpa04vw9nhl7q07li7rmlkxc1cl"; depends=[MASS Rcpp robustbase]; }; qqman = derive2 { name="qqman"; version="0.1.8"; sha256="1a6qp5wv9bvwjchfw8x4jh48hkynlnfr21a8vqgnswldvwbq7njq"; depends=[calibrate]; }; qqplotr = derive2 { name="qqplotr"; version="0.0.6"; sha256="0kj1m7m04599d3b6227vja02zwq5d2vc0cyz2c7jvki4g3q2knxf"; depends=[dplyr ggplot2 MASS opdisDownsampling qqconf robustbase]; }; qqtest = derive2 { name="qqtest"; version="1.2.0"; sha256="1v0qbbp2dpqflpg7yif7hipwdbz27isfyfwcia1ln7z0nnvkjm8c"; depends=[]; }; @@ -15101,8 +15307,8 @@ in with self; { qrmdata = derive2 { name="qrmdata"; version="2022-05-31-1"; sha256="1wp92qjmhy12l4l80kbq7rxc8vnwinfi5qbp74a5zkpwrbdrhi2h"; depends=[xts]; }; qrmix = derive2 { name="qrmix"; version="0.9.0"; sha256="1r695d9bmmngvblh9jj0rnjymdaln9w0jywz51wla0bdssssf845"; depends=[MASS quantreg]; }; qrmtools = derive2 { name="qrmtools"; version="0.0-16"; sha256="14396xnh4m1kkrhngpai3s4a94csqqbpi1nlqalq0l53iyvj8bcz"; depends=[ADGofTest lattice Quandl quantmod rugarch xts zoo]; }; - qrng = derive2 { name="qrng"; version="0.0-8"; sha256="1yagh7llrg208mdmwyq7gy4c7h20hj4s5ikp6nc3q8pl7avmq3jc"; depends=[copula randtoolbox]; }; - qrnn = derive2 { name="qrnn"; version="2.0.5"; sha256="0ligz67kbfg5cmvacnb7y0ms1v0c7mbvbcfsxyfiz543ppl3xn1v"; depends=[]; }; + qrng = derive2 { name="qrng"; version="0.0-9"; sha256="1qkfaqj0bmfvray5cdv83ic967wf2lsvnr37z008vi7kwm2glpig"; depends=[]; }; + qrnn = derive2 { name="qrnn"; version="2.1"; sha256="19lavs7r7xhwxgbaw6i6makfrbym7aiz8ar3vcb8ff1p2jdpqnag"; depends=[]; }; qs = derive2 { name="qs"; version="0.25.5"; sha256="0k0688fz95xwb4s9fjgnnif3kzbisxgfgbfad07gpzd0123ki1rz"; depends=[RApiSerialize Rcpp stringfish]; }; qsimulatR = derive2 { name="qsimulatR"; version="1.1"; sha256="1h1pfr9cdramkr0ph7hmbvz585zwa964fd8z1hzc00pyr36ypf3k"; depends=[]; }; qsort = derive2 { name="qsort"; version="0.2.3"; sha256="1xvp29dijfa2207wyw3z09rmffn61fngfy0f00qjk284n1jnnvrg"; depends=[cowplot ggplot2 gridExtra purrr]; }; @@ -15111,8 +15317,8 @@ in with self; { qst = derive2 { name="qst"; version="0.1.2"; sha256="0f5c4088y9c5fxyy2dyfkp049lnzvys3zyizazxsa82xwkwsbc8a"; depends=[DBI dbplyr dplyr magrittr RSQLite tibble]; }; qsub = derive2 { name="qsub"; version="1.1.3"; sha256="0ygys183pj420jr9bz13x009qis3qr1aqxgw3l2d4xx3xv90iy3g"; depends=[dplyr glue pbapply processx purrr random readr ssh stringr tidyr]; }; qte = derive2 { name="qte"; version="1.3.1"; sha256="1hz3rwsi3w2b1xjigf5s3866djcxdkjz7jwcz0rin22v5h6sql80"; depends=[BMisc data_table formula_tools ggplot2 Hmisc pbapply quantreg texreg]; }; - qtl = derive2 { name="qtl"; version="1.58"; sha256="15wxn3sdvmgjgmfxl0qsxhkr7b7kn1hz2962cd6k0qmffz0mmjkf"; depends=[]; }; - qtl2 = derive2 { name="qtl2"; version="0.30"; sha256="0c9v5hwfmlchrdzdysvmi6dsxyclc15sqbp65l4x6zwpd0828h6c"; depends=[data_table jsonlite Rcpp RcppEigen RSQLite yaml]; }; + qtl = derive2 { name="qtl"; version="1.60"; sha256="1bfqb5rz1qxrq8876d13m8zfsn88xn9xsymjkzvd8xka5kz5v7lf"; depends=[]; }; + qtl2 = derive2 { name="qtl2"; version="0.32"; sha256="1sbkflnb6s8k8fwkhs7pg1s9jw13jd3y5a15xrqmy391bm5s26rn"; depends=[data_table jsonlite Rcpp RcppEigen RSQLite yaml]; }; qtl2convert = derive2 { name="qtl2convert"; version="0.28"; sha256="06703m9mkpc77agkmikr9bhr4ag1z161k8pq8l1i562mkd0qlgs8"; depends=[qtl qtl2 Rcpp]; }; qtl2fst = derive2 { name="qtl2fst"; version="0.26"; sha256="0wpqpmj752pwjgghv7b30r69nc950h5fnsszsj142p7vws7ss8j9"; depends=[fst qtl2]; }; qtl2ggplot = derive2 { name="qtl2ggplot"; version="1.2.2"; sha256="0w3xlyxcg0v111fp7z998m5qk0rfyk4k1dl7bpbww9v2ppizzr36"; depends=[assertthat dplyr ggplot2 ggrepel purrr qtl2 RColorBrewer Rcpp rlang stringr tidyr]; }; @@ -15146,25 +15352,26 @@ in with self; { quantCurves = derive2 { name="quantCurves"; version="1.0.0"; sha256="0z00agd4q157cjkc4gwyfw3kka043wcf5j7yzn8cqm281fqh1jny"; depends=[KernSmooth locpol np quantreg quantregGrowth]; }; quantdates = derive2 { name="quantdates"; version="1.0"; sha256="1hyds8rwr1yg740aq4w5fqjrwdf3dl4phf8mj8qsgbb7i0wbbf3q"; depends=[lubridate]; }; quantdr = derive2 { name="quantdr"; version="1.2.2"; sha256="0w6jdd6i4wxbk4fp44rmy32mwq9ng63zwamq8zpa1hlfbm5qh4s2"; depends=[dr KernSmooth mvtnorm quantreg]; }; - quanteda = derive2 { name="quanteda"; version="3.2.4"; sha256="1yg3lgckh6fncmw037p4gaa2bab59yh6izqix1cgyysjg4jpcw62"; depends=[fastmatch magrittr Matrix Rcpp RcppArmadillo RcppParallel SnowballC stopwords stringi xml2 yaml]; }; + quanteda = derive2 { name="quanteda"; version="3.3.1"; sha256="0rj13m0fmk0h9akmqwwp7nkwrvym7sj97jgvjr4mvi3sglq451b2"; depends=[fastmatch jsonlite magrittr Matrix Rcpp RcppArmadillo RcppParallel SnowballC stopwords stringi xml2 yaml]; }; quanteda_textmodels = derive2 { name="quanteda.textmodels"; version="0.9.6"; sha256="1shsyz8nz8cabmsgrimxym4b0fd3zbjp3vx5si41rp9gr9c94sx1"; depends=[glmnet LiblineaR Matrix quanteda Rcpp RcppArmadillo RcppParallel RSpectra SparseM stringi]; }; quanteda_textplots = derive2 { name="quanteda.textplots"; version="0.94.3"; sha256="05dz3llp79i1giz0b7lm6kb14qf2rp26xz33skb71iiks290zp19"; depends=[extrafont ggplot2 ggrepel igraph Matrix network quanteda RColorBrewer Rcpp sna stringi]; }; - quanteda_textstats = derive2 { name="quanteda.textstats"; version="0.96.1"; sha256="0n4avavcl0rdjd7mg70h8jf6l24klqmqs5w4ij22l9qk20xg6fhp"; depends=[Matrix nsyllable proxyC quanteda Rcpp RcppArmadillo RcppParallel stringi]; }; + quanteda_textstats = derive2 { name="quanteda.textstats"; version="0.96.2"; sha256="0jgavpywwg852x0qpqr4bajv2jskysp0dn1pk1larn6xz7za70sk"; depends=[Matrix nsyllable proxyC quanteda Rcpp RcppArmadillo RcppParallel stringi]; }; quantification = derive2 { name="quantification"; version="0.2.0"; sha256="116cp88q9cmizxc2a8lsysa1vwyp1y86457fx5qkq5dcm4g721g8"; depends=[car]; }; quantileDA = derive2 { name="quantileDA"; version="1.1"; sha256="0jbklxsy33j7clcw97qq4ijwkrb94v2m11gjcfa38vplfxm9913q"; depends=[]; }; quantilogram = derive2 { name="quantilogram"; version="2.2.1"; sha256="0gvr93d6jjixcrislym0mna2l3plqhl8adaqiagdvxg4y0adfmf0"; depends=[np quantreg SparseM]; }; - quantities = derive2 { name="quantities"; version="0.2.0"; sha256="0lp6s9kwgs7vw36nq2qq40n68wqzycr94q0hc4rlgc4gvwwm1sj6"; depends=[errors Rcpp units]; }; + quantities = derive2 { name="quantities"; version="0.2.1"; sha256="15z988jz1kza162qwfbiz90wjm3sc8kfkylwa73nkjifcd9l2ir5"; depends=[errors Rcpp units]; }; quantkriging = derive2 { name="quantkriging"; version="0.1.0"; sha256="0v6kckgzhgsn3158sc06xszdhmk8sfny10j1qyppxsl2hk89n8jf"; depends=[ggplot2 hetGP Matrix reshape2]; }; - quantmod = derive2 { name="quantmod"; version="0.4.21"; sha256="1qmpdk91smiqg63h4jsrw4izl4pnbgwlzi16zjvin0fs29kx01jf"; depends=[curl TTR xts zoo]; }; + quantmod = derive2 { name="quantmod"; version="0.4.22"; sha256="0pknwssha01hjsf3c7lgrabk2c3rzq5wa2m7mf8sz7wsrbqrd57j"; depends=[curl jsonlite TTR xts zoo]; }; quantoptr = derive2 { name="quantoptr"; version="0.1.3"; sha256="0f9vy9yhya4wpya8n345s6n7a5sb29chdkl5fz6dwa31lp1mvvj3"; depends=[quantreg Rdpack rgenoud stringr]; }; - quantreg = derive2 { name="quantreg"; version="5.94"; sha256="1h8p3gzaas8gdvyh13ir8xc92hiybmizb0yhnwk7gvbjp768bmaj"; depends=[MASS Matrix MatrixModels SparseM survival]; }; + quantreg = derive2 { name="quantreg"; version="5.95"; sha256="1k4n5armw4lfyy4q8llnrpgvcw7s5n8w9zfff9rr5ggbrqgah1ab"; depends=[MASS Matrix MatrixModels SparseM survival]; }; quantreg_nonpar = derive2 { name="quantreg.nonpar"; version="1.0"; sha256="1f9120awnkwsgdiqg98lg7xs5l4y80930869x6k9q76595r5m92k"; depends=[fda mnormt quantreg Rearrangement]; }; quantregForest = derive2 { name="quantregForest"; version="1.3-7"; sha256="0lk7r02i6zpx9sdl2rp0r7fc3a84s8qhg49nh2x7k3vxwa095pjz"; depends=[randomForest RColorBrewer]; }; - quantregGrowth = derive2 { name="quantregGrowth"; version="1.6-0"; sha256="1jvn34sppsxm82z9aamfnnm8flvzwflgwm5y5vcsr145rac7pwpf"; depends=[quantreg]; }; + quantregGrowth = derive2 { name="quantregGrowth"; version="1.6-2"; sha256="1ycr6dlbkypv9wf4ivk8kv1hpcxzzqh3ds3lic6way4vaikmh6mq"; depends=[quantreg]; }; quantregRanger = derive2 { name="quantregRanger"; version="1.0"; sha256="1a9q2prr790bpw6s0y5ni5ppd3vqkjr0v4nqp6ywcj5n3sk69pvx"; depends=[ranger Rcpp]; }; quantspec = derive2 { name="quantspec"; version="1.2-3"; sha256="0ifwq2jmvxhpijz9yd9hffkff6ixcliaqkp9ispp9k1b8icwi8zn"; depends=[abind quantreg Rcpp snowfall zoo]; }; quarks = derive2 { name="quarks"; version="1.1.3"; sha256="132ic5wr59sb89f352p7zspjx214575x45gla01dkcsimfrinjdg"; depends=[dygraphs ggplot2 progress rugarch shiny shinyjs smoots xts yfR]; }; quarrint = derive2 { name="quarrint"; version="1.0.0"; sha256="13fdmmrgn23xd9vpywmcl7pf729gmcxjfl1wxs30axsbp4h1s6rk"; depends=[neuralnet]; }; + quartets = derive2 { name="quartets"; version="0.1.1"; sha256="0j5qgk3ha621l3njah54rnxf12ndafcai5bdvv96n888c3yki3nd"; depends=[]; }; quarto = derive2 { name="quarto"; version="1.2"; sha256="186q07r2hwldhk6fvhamaqq21g5c74jp967rqan13l4diakgb739"; depends=[jsonlite later processx rmarkdown rsconnect rstudioapi yaml]; }; queryparser = derive2 { name="queryparser"; version="0.3.2"; sha256="0va2h1midvf8adymqwg79flpqq7ciznk285kmyqdskkn87argjd2"; depends=[]; }; queryup = derive2 { name="queryup"; version="1.0.4"; sha256="11abm3rvgvyzx247rrs32g46idx4k32knlnmhvvahgm5y3hh8l6s"; depends=[httr jsonlite]; }; @@ -15178,7 +15385,6 @@ in with self; { quickReg = derive2 { name="quickReg"; version="1.5.0"; sha256="1l1v3k8albxlaz18l2b2x2ryifq4pbdq6n4q7555hnfcik9rqmw5"; depends=[dplyr ggplot2 nortest psych rlang survival]; }; quickblock = derive2 { name="quickblock"; version="0.2.0"; sha256="0ij4ivpnkjzdixbq7pg4g1xkb031qawadr22qhzp0q210qhmhc0m"; depends=[distances scclust]; }; quickcheck = derive2 { name="quickcheck"; version="0.1.2"; sha256="060pas64vzgqr038d1ab36h69z6rk6xaqf6kydwcs2phhir67zyc"; depends=[data_table hedgehog hms magrittr purrr testthat tibble]; }; - quickerstats = derive2 { name="quickerstats"; version="0.0.1"; sha256="0jlczz042701p6j4m60k425m9x3q88m27mmf62ngz80dylcl2fdx"; depends=[curl httr readr tibble]; }; quickmapr = derive2 { name="quickmapr"; version="0.3.0"; sha256="0962qm8ak0wpqld8nrb8rvvb78743zfrfsq2xrwdlql681j2nv8c"; depends=[httr raster rgdal rgeos sf sp]; }; quickmatch = derive2 { name="quickmatch"; version="0.2.1"; sha256="1qfslhjlbjpzigz8n6b7w41g8pwdiwri091ivd5igp1xy5pv8a3w"; depends=[distances sandwich scclust]; }; quickpsy = derive2 { name="quickpsy"; version="0.1.5.1"; sha256="0dfqlpghnw79idw3ir03cxx9n88sqs5p14jz7jgpkdwvjpw1y4q9"; depends=[DEoptim dplyr ggplot2 MPDiR]; }; @@ -15192,10 +15398,11 @@ in with self; { quoradsR = derive2 { name="quoradsR"; version="0.1.0"; sha256="1gdb5zvi7hs2mpzv07w1mbm9w4ksidbz28mjb6w20bfpy6casfz5"; depends=[jsonlite]; }; quotedargs = derive2 { name="quotedargs"; version="0.1.3"; sha256="11cswg9bmddsl1axxcdz11flq46p1zkpv022526f2vgl4qsprwbm"; depends=[]; }; qut = derive2 { name="qut"; version="2.2"; sha256="1jsp3sv1631ar1sad8fy4l60ar2pbi20g50yz9mhs83427n3l63b"; depends=[flare glmnet lars Matrix]; }; - qvcalc = derive2 { name="qvcalc"; version="1.0.2"; sha256="0banzv78kb53ybfbh1hmgx7kxvpbbdxzg4dsn7vrwhmxs72srkch"; depends=[]; }; + qvcalc = derive2 { name="qvcalc"; version="1.0.3"; sha256="17sr4100ciy5jp0b8sxvqjxf4m176ayzd5yyaw40ri4xf6h0z7la"; depends=[]; }; qwraps2 = derive2 { name="qwraps2"; version="0.5.2"; sha256="1ars25aa50fn6m4v423pzs4rkplxhpi26qi3aq7f39bgmqpnpy83"; depends=[dplyr ggplot2 knitr Rcpp RcppArmadillo rlang xfun]; }; r_blip = derive2 { name="r.blip"; version="1.1"; sha256="1p33g6i6fq9c27d5ix9nd8prv90i4hrf91x34bldlw8041sjqxm0"; depends=[bnlearn foreign]; }; r_jive = derive2 { name="r.jive"; version="2.4"; sha256="12zjzjjy1dwhr1gxb5029p5l3wjhwaysja4zf6insdnx1fd0ybxd"; depends=[abind gplots]; }; + r_proxy = derive2 { name="r.proxy"; version="0.1.2"; sha256="0r3xivqnczmyrf2lnimarmzp0wjxr7dgnf8vaw8faniskydxg0fb"; depends=[curl httr jsonlite]; }; r02pro = derive2 { name="r02pro"; version="0.1"; sha256="1zciq86wpykvbd6zmh8b83dl4vpz53isi6hbbrz0h48sqb1g2006"; depends=[learnr]; }; r2d2 = derive2 { name="r2d2"; version="1.0.1"; sha256="1956p9xr9as8v4673d6fsdyas3racfzh6a5pafqz56r8ai1ssbyq"; depends=[KernSmooth MASS sp]; }; r2d3 = derive2 { name="r2d3"; version="0.2.6"; sha256="15mphywsr0603ipbgzac65n1nj7m77fmw3ypc33p9ng4fllg035r"; depends=[htmltools htmlwidgets jsonlite rstudioapi]; }; @@ -15203,15 +15410,15 @@ in with self; { r2dii_analysis = derive2 { name="r2dii.analysis"; version="0.2.1"; sha256="0408r5vlq5kgd0b653sywi62rkfw1sg3m4via072c5bdr207bj8d"; depends=[dplyr glue lifecycle magrittr r2dii_data rlang tidyr tidyselect zoo]; }; r2dii_data = derive2 { name="r2dii.data"; version="0.3.1"; sha256="00a1flpqak862yf0x98kap1jalz3485mwhps3ywi1i5b9g3g2x4q"; depends=[lifecycle]; }; r2dii_match = derive2 { name="r2dii.match"; version="0.1.3"; sha256="19k6g7pa7jdsbpclkvppj3m08vji79jnijywzplwy01c84by5gf8"; depends=[data_table dplyr glue lifecycle magrittr purrr r2dii_data rlang stringdist stringi tibble tidyr tidyselect]; }; - r2dii_plot = derive2 { name="r2dii.plot"; version="0.3.0"; sha256="0xfirb7xq199mxngjva535nqfdfl8ff26bmfdk141hg9fysfs00v"; depends=[dplyr forcats ggplot2 ggrepel glue lifecycle magrittr r2dii_data rlang scales stringr]; }; + r2dii_plot = derive2 { name="r2dii.plot"; version="0.3.1"; sha256="090nb09dypsh13mridxiib32vm3fc49r1237rws5wzj4w3icyy6n"; depends=[dplyr forcats ggplot2 ggrepel glue lifecycle magrittr r2dii_data rlang scales stringr]; }; r2glmm = derive2 { name="r2glmm"; version="0.1.2"; sha256="0iim92blpa59vgz97c2pi05yhbjjmaffdbkbmk5kplfb2vmazgiy"; depends=[afex data_table dplyr ggplot2 gridExtra lmerTest MASS Matrix mgcv pbkrtest]; }; r2mlm = derive2 { name="r2mlm"; version="0.3.3"; sha256="11y5h2qy3ja8p6c0gx6cks7wd0am9zi3f1bxdj0fa9aq5gbfnqbw"; depends=[dplyr lme4 magrittr nlme rlang rockchalk stringr tidyselect]; }; r2pmml = derive2 { name="r2pmml"; version="0.27.1"; sha256="1liixrwrr23k96rkl3ijfcvxmfh43ffj8y7qr2zr50c1ampipnkr"; depends=[]; }; r2pptx = derive2 { name="r2pptx"; version="0.1.0"; sha256="12p3018b514kk1yxm1xyc0835j34zvpr1fz8k5rpiz30fbxjip58"; depends=[glue officer]; }; r2r = derive2 { name="r2r"; version="0.1.1"; sha256="0vp0ak88m3ssca8b8kxf9w6qkxsdy0qs6cngrr9gqvbrnx0gh9j6"; depends=[digest rlang]; }; r2redux = derive2 { name="r2redux"; version="1.0.13"; sha256="0pbly0r5jjil1rkr3fy8484ybls1hkwq7i38nvf3q5dshwims8jd"; depends=[]; }; - r2resize = derive2 { name="r2resize"; version="1.5"; sha256="0wk56hgx9b588ay42dpbc1wl5wg4s7ag6vgmy2nbza1sa5mk4k8p"; depends=[DT shiny]; }; - r2rtf = derive2 { name="r2rtf"; version="1.0.1"; sha256="12h3pm7kif1kj5096hd6c2xpdr3vy0b91cgsp6263fx4553pavbq"; depends=[]; }; + r2resize = derive2 { name="r2resize"; version="1.6"; sha256="1klgq8gjyg8afb9gbsd7fq1df3isw5jbfy4lg3qvajzbz5pjcj78"; depends=[DT nextGenShinyApps shiny]; }; + r2rtf = derive2 { name="r2rtf"; version="1.0.3"; sha256="06lfz118w8gfc7bd3a0gi15ggi5182wpv2q194m13vkifa9k97pa"; depends=[]; }; r2shortcode = derive2 { name="r2shortcode"; version="0.1"; sha256="03djy8m146k31xgvwcbrd1nzwj4wdlvvwzgviv80kskgr6ld9jrj"; depends=[magrittr stringr]; }; r2social = derive2 { name="r2social"; version="1.0"; sha256="1jmhq2qfh3wn47ysl8lairhj7zibiq0dw5nfx0ki1d3vi6f7bv5r"; depends=[htmltools shiny]; }; r2spss = derive2 { name="r2spss"; version="0.3.2"; sha256="1d0znbw0bmgl8k9xwz78lmidh8338n3vq4f9qyqmb87nvjmiilhl"; depends=[car ggplot2 scales]; }; @@ -15228,7 +15435,7 @@ in with self; { r6methods = derive2 { name="r6methods"; version="0.1.0"; sha256="18q1qd7hkxbk0yilqdk17cp7qbl4c71jv10z732539wcmy8svb1v"; depends=[dplyr glue magrittr miniUI purrr rstudioapi shiny stringr]; }; rADA = derive2 { name="rADA"; version="1.1.9"; sha256="0p47nqm8mki03pq5gzc2r5vx4vixs6hpf7am1fvadgi2bn2jrcl2"; depends=[car dplyr e1071 forestplot ggplot2 gridExtra Hmisc knitr lme4 lmerTest matrixStats openxlsx reshape2 stringr tidyr]; }; rARPACK = derive2 { name="rARPACK"; version="0.11-0"; sha256="12h2y46xcfldhjdmm960swgn9b23zvkj5vg2bi42s9qxwgi02d63"; depends=[RSpectra]; }; - rATTAINS = derive2 { name="rATTAINS"; version="0.1.4"; sha256="11wbhlz5riv1dhxww70l7r44fkc6vdgjnn9rbq6w1ckhr1bc34z6"; depends=[checkmate crul curl dplyr fauxpas fs janitor magrittr purrr rlang rlist tibble tidyjson tidyr]; }; + rATTAINS = derive2 { name="rATTAINS"; version="1.0.0"; sha256="0s8byhlpmf95kan86id4kwffcqhp0jm55jx3f0wdz0g641ghrarc"; depends=[checkmate crul curl dplyr fauxpas fs jsonlite lifecycle rlang rlist tibblify tidyr tidyselect]; }; rAmCharts = derive2 { name="rAmCharts"; version="2.1.15"; sha256="0fcspbmzyyk6hinpjp29dv2banm0gssn9vy2zjf2p498hmysy3db"; depends=[data_table htmltools htmlwidgets knitr pipeR yaml zoo]; }; rAmCharts4 = derive2 { name="rAmCharts4"; version="1.6.0"; sha256="0lpy2mpflhryxg96miz64nqrf5f97c4h78cs0bpf5qn33jci66wh"; depends=[base64enc htmltools htmlwidgets jsonlite lubridate minpack_lm reactR shiny stringr xml2]; }; rAverage = derive2 { name="rAverage"; version="0.5-8"; sha256="09yap3qv02k5nidi6a4png9xa5yy7cb8hg8s2dq99wnc88s42d26"; depends=[]; }; @@ -15245,11 +15452,10 @@ in with self; { rCRM = derive2 { name="rCRM"; version="0.1.1"; sha256="03p2v1wb7hsvfhdcgawaz8vd2i8kh30dj8mjydlaywxyks6i5caz"; depends=[Rcpp RcppEigen]; }; rChoiceDialogs = derive2 { name="rChoiceDialogs"; version="1.0.6.1"; sha256="1ilrgx2di1cfawkv8qw6ax4gh6iw8f1n9ynqf5sbf2cx772g0nsj"; depends=[rJava]; }; rD3plot = derive2 { name="rD3plot"; version="1.0.68"; sha256="03zcmxjpa6zz1aw6yaijdhzxv3sar04w3kaz59asmcg8f8r0ghys"; depends=[igraph]; }; - rDEA = derive2 { name="rDEA"; version="1.2-6"; sha256="0045crn7azsy3ggzr28vw5jd4f5aw5nj16cjnjxy2md3skfbc3zw"; depends=[maxLik slam truncnorm truncreg]; }; + rDEA = derive2 { name="rDEA"; version="1.2-7"; sha256="0ijyfkx4jgjcbhr5fpgc1v30408graskrc9kmy491hwcll6v4bvm"; depends=[maxLik slam truncnorm truncreg]; }; rDNAse = derive2 { name="rDNAse"; version="1.1-1"; sha256="0cl51q61kwvdsm5f49cjjbzggqam1fnr6gp15cmy6m2yahyxg1lk"; depends=[]; }; rDataPipeline = derive2 { name="rDataPipeline"; version="0.54.1"; sha256="0i0vb7gsjshh1wn0lksdma51xdyn6qw54j02cb0xmzcg896gl2p9"; depends=[assertthat cli configr dplyr git2r httr jsonlite openssl R6 rhdf5 semver usethis yaml]; }; rDecode = derive2 { name="rDecode"; version="0.1.0"; sha256="1d0rrhycw9anhvx6czz7axkzhzqprdgi9sqfglmc962zf1x3hmn2"; depends=[]; }; - rDppDiversity = derive2 { name="rDppDiversity"; version="0.0.2"; sha256="0833v5wkamqipfxpsdxz040q6vlgg9qqpwiaivvh8ar5sci10v88"; depends=[Rcpp]; }; rEDM = derive2 { name="rEDM"; version="1.14.0"; sha256="0lgvwmhxzi76sh16a81qwn7sp1kriwq83x5py8835icvygdsrpyx"; depends=[Rcpp RcppThread]; }; rEMM = derive2 { name="rEMM"; version="1.2.0"; sha256="1qicpxxbm8gc5nb2j2n8sa5i342dw8pjgmbw01963vsybhkwzsim"; depends=[cluster clusterGeneration igraph MASS proxy stream]; }; rENA = derive2 { name="rENA"; version="0.2.4"; sha256="0yfmdfw45azyzcy7rf5xsannrlranbxpgfsb52rl6vvd681p4r4x"; depends=[concatenate data_table doParallel foreach magrittr plotly R6 Rcpp RcppArmadillo scales]; }; @@ -15271,7 +15477,7 @@ in with self; { rLiDAR = derive2 { name="rLiDAR"; version="0.1.5"; sha256="0sw79zr7hdwprlwijlg6qmn7pmpcnhxfr7ycdz09058c0kd815h8"; depends=[bitops deldir geometry plyr raster rgeos rgl sp spatstat_geom]; }; rMEA = derive2 { name="rMEA"; version="1.2.2"; sha256="18manb926yd6a3b6im7g2vf1cbvvdkg15i6zl223npckhna2nbx0"; depends=[]; }; rMIDAS = derive2 { name="rMIDAS"; version="0.4.1"; sha256="0q40ksz09c8mv3kci35k561f92nz26vb5w4kh7xpkcmwig8bcqwx"; depends=[data_table mltools reticulate]; }; - rMOST = derive2 { name="rMOST"; version="0.0.2"; sha256="0dy0sls9sl4n1hsyw6rczcffl1p03nlxs1m1jhdk9a00wrwkzvky"; depends=[nloptr]; }; + rMOST = derive2 { name="rMOST"; version="1.0.0"; sha256="1g8g7hl937884l96cyz9wj486qgfm7lla47q8lmzn20fx1izjddr"; depends=[nloptr]; }; rMR = derive2 { name="rMR"; version="1.1.0"; sha256="0da1hclfnnlkp9by6zf2p079643p8nimplr9p3ipbjdy739j344z"; depends=[biglm]; }; rMVP = derive2 { name="rMVP"; version="1.0.6"; sha256="0c3bmn7k5hgw8mgplyhwf6dkgvrxd29yj829wy5j9z1p88gq6wrk"; depends=[BH bigmemory MASS Rcpp RcppArmadillo RcppEigen RcppProgress]; }; rMisbeta = derive2 { name="rMisbeta"; version="1.0"; sha256="1h4vilnndl0gnz9z0sgbywp4zy44718zpiqcqigbjbd4lymi0y61"; depends=[ROC]; }; @@ -15294,13 +15500,12 @@ in with self; { rSEA = derive2 { name="rSEA"; version="2.1.1"; sha256="18108ds65ykxygbw1s4i5rb1ngzwymv1x3dhcv1lcwkmqplnaar9"; depends=[ggplot2 hommel]; }; rSFA = derive2 { name="rSFA"; version="1.5"; sha256="17jabv64rgaxs5kx579vjrhcw2k08c6ah6a11cswl8v9h0vjjz8i"; depends=[MASS]; }; rSHAPE = derive2 { name="rSHAPE"; version="0.3.2"; sha256="0z6dizsxlkmaymbd24b1m1i8kmndcf21nxxnyfzq6gvdii7bal4h"; depends=[abind DBI doParallel evd foreach RSQLite sn VGAM]; }; - rSPDE = derive2 { name="rSPDE"; version="2.1.0"; sha256="1jfvk6i1w512nj1cp9xgn5wa2f45ggm3ldqw0i5c7f0wh50w7l9w"; depends=[Matrix]; }; + rSPDE = derive2 { name="rSPDE"; version="2.3.1"; sha256="0k5dp3ngp2a4jdqlvfc39krhl0bwscxqplzzca0bl3l43smpkprw"; depends=[Matrix numDeriv]; }; rSRD = derive2 { name="rSRD"; version="0.1.7"; sha256="1srvv49xxkq2nx7fvbn3d2hr4v6ypkxgz6ms1l89zgd0ypdgmypa"; depends=[dplyr ggplot2 ggrepel gplots janitor Rcpp rlang stringr tibble]; }; rSpectral = derive2 { name="rSpectral"; version="1.0.0.10"; sha256="12fgyjlk4a6gm2ccjw4mh47ccln2i7iklqammmk8y20i3hd3mh6x"; depends=[graph igraph Rcpp RcppArmadillo Rdpack]; }; - rStrava = derive2 { name="rStrava"; version="1.1.4"; sha256="00y400znkwyr6y33wiz0jikpa31a60hdcmsi9x3724zwjh28vynj"; depends=[bitops dplyr geosphere ggplot2 ggrepel googleway httpuv httr magrittr plyr purrr RCurl rvest tibble tidyr V8 XML xml2]; }; + rStrava = derive2 { name="rStrava"; version="1.2.0"; sha256="069k20pjxrgm8gri2cslcvf69mflalfgf7q58a52b1043vflj136"; depends=[dplyr geosphere ggplot2 ggrepel googleway httr magrittr plyr purrr RCurl rvest tibble tidyr V8 XML xml2]; }; rTCRBCRr = derive2 { name="rTCRBCRr"; version="0.1.1"; sha256="0k4blxbnyzgfgcvn59zw8fnw6avhgbmbgkk6a1ycpz1jijy1sn2z"; depends=[magrittr readr tidyr tidyselect]; }; rTG = derive2 { name="rTG"; version="1.0.1"; sha256="1wsas7wvyzbiw31iv0qazjmnxj7al84y5kpvglf1f0dd444y4hc0"; depends=[brnn dplyr ggplot2 knitr magrittr mgcv]; }; - rTLS = derive2 { name="rTLS"; version="0.2.5.6"; sha256="0xjcqmjq3s9bfzfzndj2fi3830c3p1rrjr511amp186wmfnslmyd"; depends=[alphashape3d boot data_table doSNOW foreach Rcpp RcppArmadillo RcppHNSW RcppProgress rgeos rgl sp]; }; rTLsDeep = derive2 { name="rTLsDeep"; version="0.0.5"; sha256="1hkhshpcfdrv7df8lawsgmbrfkmbasd1jc4dddz6yzc21fkg136p"; depends=[caret ggplot2 keras lidR matrixStats reticulate rgl sf tensorflow]; }; rTRIPLEXCWFlux = derive2 { name="rTRIPLEXCWFlux"; version="0.2.0"; sha256="0gliwrbwynxm0ldnvpqs8yl6k63y54kr4ggx21zsvjbqbxs2q4v3"; depends=[]; }; rTRNG = derive2 { name="rTRNG"; version="4.23.1-2"; sha256="0rba3dxy97r75mxfn8rxrk2081my79la2m5m9h5ms2z5px07llqd"; depends=[Rcpp RcppParallel]; }; @@ -15318,7 +15523,7 @@ in with self; { rabhit = derive2 { name="rabhit"; version="0.2.5"; sha256="0c513sbldd85snww412k3c5rhmzd5k89s2wq4d713qsvzsh4v1xl"; depends=[alakazam cowplot data_table dendextend dplyr fastmatch ggdendro ggplot2 gridExtra gtable gtools htmlwidgets plotly plyr RColorBrewer readr reshape2 rlang splitstackshape stringi tidyr tigger]; }; rabi = derive2 { name="rabi"; version="1.0.2"; sha256="0jndx1gvsnsv1xrx3ismgvjp7d4kj3436zcawvw32c5klvxx0y4j"; depends=[numbers polynom shiny stringdist]; }; racademyocean = derive2 { name="racademyocean"; version="0.3.2"; sha256="0p16xwlm67rvbla6mnky6yv5aa2r61v645jlwhg0zn2dyc8xpajk"; depends=[cli dplyr httr2 pbapply purrr rappdirs retry rlang stringr tidyr withr]; }; - raceland = derive2 { name="raceland"; version="1.1.2"; sha256="0mkxxqbpq90iw540kzj12352l5r9scgfdj60swqv436jqj21gjah"; depends=[comat fasterize plotwidgets raster Rcpp RcppArmadillo rgdal sf]; }; + raceland = derive2 { name="raceland"; version="1.2.1"; sha256="0kkl12amzaff6y4bj1c62p1clkvxlfm8d20i6d09x35hkkxblnjk"; depends=[comat plotwidgets Rcpp RcppArmadillo sf terra]; }; racir = derive2 { name="racir"; version="2.0.0"; sha256="0qpjnaifx4z1jvyrc8p5jny0ci20w2ri1rs68sv9b93nkaiixnps"; depends=[]; }; ractivecampaign = derive2 { name="ractivecampaign"; version="0.2.0"; sha256="1l7266qryba2zijgs7xj4p073l69q0iin6qgsbnn7dafmggv5mlr"; depends=[cli dplyr httr pbapply retry stringr tidyr]; }; radar = derive2 { name="radar"; version="1.0.0"; sha256="1wh5j3cfbj01jx2kbm9ca5cqhbb0vw7ifjn426bllm4lbbd8l273"; depends=[]; }; @@ -15326,14 +15531,14 @@ in with self; { radarchart = derive2 { name="radarchart"; version="0.3.1"; sha256="0gcxnbgj8ja1m4wzhbjy67m6zphf0c5ni9yx7sr7f0abm03ry753"; depends=[htmltools htmlwidgets]; }; radiant = derive2 { name="radiant"; version="1.5.0"; sha256="1kzbslf6bqi9h7znfp0hj1i7ljagb38sfri016m1xsywmc1s7cl5"; depends=[r_import radiant_basics radiant_data radiant_design radiant_model radiant_multivariate shiny]; }; radiant_basics = derive2 { name="radiant.basics"; version="1.5.0"; sha256="0b6fj447hcj2q2qr24lwz9xy5n9dkxrfzzcmhlvz4197xxnfhbam"; depends=[dplyr ggplot2 lubridate magrittr patchwork polycor psych r_import radiant_data rlang scales shiny tidyr]; }; - radiant_data = derive2 { name="radiant.data"; version="1.5.1"; sha256="1q6v7pkqk8rbxrmbnyj9drqb0p2rk8v4d3fxw1gqmqhzd6qp4yab"; depends=[base64enc broom bslib car curl dplyr DT ggplot2 glue jsonlite knitr lubridate magrittr markdown MASS patchwork plotly png psych r_import randomizr readr readxl rlang rmarkdown rstudioapi scales shiny shinyAce shinyFiles stringi tibble tidyr writexl]; }; + radiant_data = derive2 { name="radiant.data"; version="1.5.6"; sha256="1dd18brwgcpkqbnxg6jqk4r7aw1i2d7lg9mnfw59q95n6jk86lr5"; depends=[base64enc broom bslib car curl dplyr DT ggplot2 glue jsonlite knitr lubridate magrittr markdown MASS patchwork plotly png psych r_import randomizr readr readxl rlang rmarkdown rstudioapi scales shiny shinyAce shinyFiles stringi tibble tidyr writexl]; }; radiant_design = derive2 { name="radiant.design"; version="1.5.0"; sha256="16wsq2gfs6rkbn79c4a0mgnsdribjhj1c7rln9nnnaxf8mq0jmnh"; depends=[AlgDesign dplyr magrittr mvtnorm polycor pwr r_import radiant_data randomizr shiny]; }; radiant_model = derive2 { name="radiant.model"; version="1.5.0"; sha256="1sawrlazjmgzsd9j2l6va6f62khxfmxi9kdkjjy8xbp87s8ka6wj"; depends=[broom car data_tree DiagrammeR dplyr e1071 ggplot2 ggrepel lubridate magrittr NeuralNetTools nnet patchwork pdp psych r_import radiant_basics radiant_data ranger rlang rpart sandwich shiny stringi stringr tidyr vip xgboost yaml]; }; radiant_multivariate = derive2 { name="radiant.multivariate"; version="1.5.0"; sha256="158a7ihs4mlkl4vc0lbgi6xcx8w4l57d1d9qj576c4s8718bjy84"; depends=[car clustMixType dplyr ggplot2 ggrepel gower GPArotation lubridate magrittr MASS patchwork polycor psych r_import radiant_data radiant_model rlang scales shiny]; }; radir = derive2 { name="radir"; version="1.0.4"; sha256="12a99ig3n6kp5wa5rjp2w1nal4qqjs6vq05d3lrqcyl3bind6lqb"; depends=[hermite]; }; radlibs = derive2 { name="radlibs"; version="0.2.0"; sha256="1xl7pacqgiv68ay7mkr6bkx3rqqr7z8b9yh42n4zm7ybqfxbx6dr"; depends=[data_table lexicon stringr]; }; radous = derive2 { name="radous"; version="0.1.3"; sha256="1pip3givlkzb8i65nz6w724818jjr8j8nizpc3g35r9bvpmn7c2y"; depends=[checkmate curl glue httr readr]; }; - radsafer = derive2 { name="radsafer"; version="2.2.6"; sha256="0dmxdrmi8rvng69hsgqj60gw22daasxmy69z1xygd0w7vcsvn9aw"; depends=[dplyr ggplot2 ggthemes magrittr qpdf RadData readr rlang scatterplot3d stringr utf8]; }; + radsafer = derive2 { name="radsafer"; version="2.2.8"; sha256="1f71yqvhssaskhkpqavm004455hgnhifw70l46bwh15y60hmk9q7"; depends=[dplyr ggplot2 ggthemes lifecycle magrittr RadData readr rlang scatterplot3d stringr]; }; rafalib = derive2 { name="rafalib"; version="1.0.0"; sha256="1dmxjl66bfdgrybhwyaa8d4i460liqcdw8b29a6w7shgksh29m0k"; depends=[RColorBrewer]; }; ragg = derive2 { name="ragg"; version="1.2.5"; sha256="1yd89p4f2b7r2n1kl6lybbgd04kqvlf14zgmp7pxw770w1slsvwk"; depends=[systemfonts textshaping]; }; rags2ridges = derive2 { name="rags2ridges"; version="2.2.6"; sha256="1bidnjykiqiz83x98gk2y3sxsskk9fiap6grr7fb7a7h9mjhq0lw"; depends=[expm fdrtool ggplot2 graph gRbase Hmisc igraph RBGL Rcpp RcppArmadillo reshape RSpectra sfsmisc snowfall]; }; @@ -15357,12 +15562,13 @@ in with self; { randChecks = derive2 { name="randChecks"; version="0.2.1"; sha256="0fwbacnv38zf0014h9l45spfa4yd4wdif7m2a1jbl11pmns70wxm"; depends=[]; }; randcorr = derive2 { name="randcorr"; version="1.0"; sha256="1hnr0wvbsmgql39wlj4z2qbqn0fdfwyihfl6xgrlzvs9vrmig5xx"; depends=[]; }; randgeo = derive2 { name="randgeo"; version="0.3.0"; sha256="14hlh9k66lcbf0xhnxx12rrnyl8awqcsm3csvxdz23s5wnm2ya5p"; depends=[]; }; + randnet = derive2 { name="randnet"; version="0.7"; sha256="1zb2arx63avjlqjpbf37cvix080khkihh6bb0g1h2alv4lbaaaak"; depends=[AUC data_table entropy irlba Matrix mgcv nnls poweRlaw pracma RSpectra sparseFLMM]; }; rando = derive2 { name="rando"; version="0.2.0"; sha256="085g48yzwapxxfmm5bvkz0v7pmjwmakb7nl128550ppgc16wxkgb"; depends=[dplyr glue rlang tibble]; }; random = derive2 { name="random"; version="0.2.6"; sha256="0sdhagwjlhldb8hn6h4nd1sflzhwkapzybdlb8hzisy3w2ygjn9b"; depends=[curl]; }; random_polychor_pa = derive2 { name="random.polychor.pa"; version="1.1.4-4"; sha256="19yzpjidw5pbrqfa5ln5hgghv0mq3cwl92z2isq25yydfl6qsl6h"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; }; randomForest = derive2 { name="randomForest"; version="4.7-1.1"; sha256="1micz9794j7xmj755ln2692rzip8azndflxgdg6xn3j86issi7pm"; depends=[]; }; randomForestExplainer = derive2 { name="randomForestExplainer"; version="0.10.1"; sha256="1ny8c3vn2zvdx12avwvlm4lp648jigkrkcvnhf5qmj8rh0w069v0"; depends=[data_table dplyr DT GGally ggplot2 ggrepel randomForest ranger reshape2 rmarkdown]; }; - randomForestSRC = derive2 { name="randomForestSRC"; version="3.2.1"; sha256="0b3zafbaqaj1b7jw0wfh7azaky8qvbxy2jf2n7nd4957h8j10j45"; depends=[data_tree DiagrammeR]; }; + randomForestSRC = derive2 { name="randomForestSRC"; version="3.2.2"; sha256="1jsph7rzllnvh5pzsv520c836la0l8693cq7ww1bjsm8nn0fsf8b"; depends=[data_tree DiagrammeR]; }; randomGLM = derive2 { name="randomGLM"; version="1.10-1"; sha256="0557dpca39nj1451l28x4xxfr92cf48gy7crlfhnv4k91kglwcnz"; depends=[doParallel foreach geometry Hmisc MASS matrixStats survival]; }; randomLCA = derive2 { name="randomLCA"; version="1.1-2"; sha256="1s0sk3a7ldiq6x46j3jyc4alhz9jr0925adkrazz93jfcavpdrps"; depends=[boot doParallel doRNG fastGHQuad foreach lattice Matrix Rfast]; }; randomNames = derive2 { name="randomNames"; version="1.5-0.0"; sha256="1lv1vqb4wgs0j1gqy84dpa30qsvbp6928zpshczpw87yf32k71vh"; depends=[crayon data_table toOrdinal]; }; @@ -15387,7 +15593,7 @@ in with self; { rankdist = derive2 { name="rankdist"; version="1.1.4"; sha256="1xqrkss8d5vv3blqpvrvdczsygphbx259hy9j7w9b2ahssw8cjr5"; depends=[hash optimx permute Rcpp]; }; rankhazard = derive2 { name="rankhazard"; version="1.1.0"; sha256="0kljn9b74alrd22b5pwfnamdbaqi2wa2z6yzpmgpfs3x0hv72fw7"; depends=[survival]; }; rankinPlot = derive2 { name="rankinPlot"; version="1.1.0"; sha256="1kf8xwzx2mjgv3ad1yj70gm0mrsyghwkmjk98pwcj3a82qk94skr"; depends=[ggplot2 scales]; }; - rankinma = derive2 { name="rankinma"; version="0.1.5"; sha256="1skwz137cv43nj4gvi21ii4iy5j1zfrn9cg8kblk15r2cdlxn5pz"; depends=[mvtnorm netmeta]; }; + rankinma = derive2 { name="rankinma"; version="0.1.7"; sha256="1yrkbqfpwgyf6xffqcf84vihr63i1dfh449hqbjqhg7cvbcvqr21"; depends=[mvtnorm netmeta]; }; rankrate = derive2 { name="rankrate"; version="1.0.0"; sha256="0i4sf9hhyxry07bc31c1ww7hqig1r2vgkds34q5csq7g3mic3shf"; depends=[gtools lpSolve nloptr]; }; rapbase = derive2 { name="rapbase"; version="1.24.0"; sha256="08ycbla8j2156hlwbl2k8d3m3qjbanch2j1avmhj3n37pjpyn8pf"; depends=[blob bookdown DBI digest dplyr DT jsonlite kableExtra knitr magrittr readr rlang RMariaDB rmarkdown rpivotTable sendmailR shiny shinyalert sship yaml]; }; rapiclient = derive2 { name="rapiclient"; version="0.1.3"; sha256="1pm4kdga2nz1cpmchdb0ad8gr3bqfm84b1kl32cyc0x3x5rr2syz"; depends=[httr jsonlite yaml]; }; @@ -15417,7 +15623,7 @@ in with self; { rasterdiv = derive2 { name="rasterdiv"; version="0.3.1"; sha256="01fxi3i1p280n38aaffnnj68w2ri8s5qrapvc44viqv3133n837l"; depends=[foreach progress proxy raster svMisc terra]; }; rasterize = derive2 { name="rasterize"; version="0.1"; sha256="18nrhmq1qmi05rkyr86xsyc8nz0fbdpf2d45h62bbfzbfynqd4qy"; depends=[png]; }; rasterpdf = derive2 { name="rasterpdf"; version="0.1.1"; sha256="0zi54nifbb4dzb29i8rskynblw3z42vzaykwbq30ia5zs9q1bvm5"; depends=[png]; }; - rasterpic = derive2 { name="rasterpic"; version="0.2.1"; sha256="00fjn9lyx81jncxml5pw0xfbmsi2kh3mvdrvz73jhqha52zxhpl6"; depends=[png sf terra]; }; + rasterpic = derive2 { name="rasterpic"; version="0.2.2"; sha256="1yccwv52hmkypcc3ym0nlda4imb2smizn113zfsdrq9f7inrlkhf"; depends=[png sf terra]; }; ratdat = derive2 { name="ratdat"; version="1.0.0"; sha256="1d4ivllasg1yd3i95rsxl3hkyij5r9a3j83scv3ghx6bx7w79aj4"; depends=[]; }; ratelimitr = derive2 { name="ratelimitr"; version="0.4.1"; sha256="06x759jxr5zcnvg9q120n5bpipkb16piw15kxrpk7i918mby889b"; depends=[assertthat]; }; ratematrix = derive2 { name="ratematrix"; version="1.2.4"; sha256="0azn52d88m1xxckv4g02vraa9gdr5jmsxqwxwaim90p2s8jy33np"; depends=[ape coda corpcor ellipse geiger MASS mvMORPH phylolm Rcpp RcppArmadillo readr]; }; @@ -15432,7 +15638,7 @@ in with self; { raveio = derive2 { name="raveio"; version="0.1.0"; sha256="0jhs734ky5appw61n1xzfayhn12lzkzg6snpcxfrsw9ggrb9j4i4"; depends=[callr data_table dipsaus edfReader filearray fst globals glue hdf5r jsonlite promises R_matlab R6 ravetools remotes stringr targets threeBrain yaml]; }; ravelRy = derive2 { name="ravelRy"; version="0.1.0"; sha256="07mywv57rw2b309i2qisbpx1x3sb3z6n2b5gia9bdmb2m4hhpdai"; depends=[dplyr httr jsonlite purrr tibble tidyr]; }; raven_rdf = derive2 { name="raven.rdf"; version="0.2.0"; sha256="12jy3md6d1qwzkks5iljn4h0iv5lj3n39ll7r3fvrxjwh7afvw7r"; depends=[]; }; - ravetools = derive2 { name="ravetools"; version="0.1.0"; sha256="0gr9nxzicb6yc9pqs7gn140acspw8ajbfrmgz8p00z6ld0qr142f"; depends=[digest filearray pracma Rcpp RNiftyReg Rvcg signal waveslim]; }; + ravetools = derive2 { name="ravetools"; version="0.1.1"; sha256="0cq6fsjl5cam4i2pvgxpsims6af5qg80nc8i15xv0fqx9qg2m06h"; depends=[digest filearray pracma Rcpp RNiftyReg Rvcg signal waveslim]; }; raw = derive2 { name="raw"; version="0.1.8"; sha256="1y2vhpgigzkd2xyj3986wlzm1g3pp99w6fspmhlff5czd73g16is"; depends=[]; }; rawKS = derive2 { name="rawKS"; version="0.1.0"; sha256="1yiw9imhgij49qbm9hk6psb73zngqmxxwnaxq144ydwb7fbk6j0z"; depends=[dplyr ggplot2 magrittr ROCR tidyr]; }; raws_profile = derive2 { name="raws.profile"; version="0.1.0"; sha256="04f7wk7x9j3rb6nn3zqss9vw0h9a4vpcjyilc2vqy0fm2by41xkg"; depends=[stringr tibble withr]; }; @@ -15442,8 +15648,8 @@ in with self; { rayshader = derive2 { name="rayshader"; version="0.24.10"; sha256="1wdqbbk8f0vxha0awgfv4c8n7yndy2k1q6f3rkr3f5j84wwqfjbx"; depends=[doParallel foreach magrittr png progress raster rayimage Rcpp RcppArmadillo rgl scales terrainmeshr]; }; raytracing = derive2 { name="raytracing"; version="0.6.0"; sha256="16iwfgh53kj1k3vdb1d0gk80v3qwyk2dxvssry3k43dg9cvmznq3"; depends=[ncdf4 sf units]; }; rayvertex = derive2 { name="rayvertex"; version="0.4.11"; sha256="19k10p63nhcfn98ljgp15hdcvha1bd1s0kprirrardy4kdj7xs51"; depends=[digest png rayimage Rcpp RcppThread spacefillr]; }; - rb3 = derive2 { name="rb3"; version="0.0.9"; sha256="06ayyjp4xr8jwyqhpnpkdpbnbhzm733rj8vrv153qlxlal406vzd"; depends=[ascii base64enc bizdays cli digest dplyr httr jsonlite proto purrr readr readxl rlang rvest stringr tidyr XML yaml]; }; - rbacon = derive2 { name="rbacon"; version="3.0.0"; sha256="0ajzl38x36lcb3r1ackk1z9vdvcgspgqj3varjm61pip13n333cd"; depends=[coda data_table Rcpp rintcal]; }; + rb3 = derive2 { name="rb3"; version="0.0.10"; sha256="1gf4i5fbpx238af5f5bzcfmb763mlyk97aq8335slyc8828b9a9c"; depends=[ascii base64enc bizdays cli digest dplyr httr jsonlite proto purrr readr readxl rlang rvest stringr tidyr XML yaml]; }; + rbacon = derive2 { name="rbacon"; version="3.1.0"; sha256="0cbg75s0kmb0ya5mylrysc4cmkf23vyj7sdkcx0gpkzganqkwrvn"; depends=[coda data_table Rcpp rintcal]; }; rbart = derive2 { name="rbart"; version="1.0"; sha256="1byfm1ycw9nfhdblqklyn8pxn6b9q5fa3inbgfpynqpsid97ig35"; depends=[Rcpp]; }; rbcb = derive2 { name="rbcb"; version="0.1.10"; sha256="0qqrb5kvin1ansy3dswdfib2952dlbl7x1zlig3j2mfqcgwn9450"; depends=[httr jsonlite tibble xml2 xts]; }; rbch = derive2 { name="rbch"; version="0.1-1"; sha256="0n2s5qfgjvg7vv65myz6dcmmaf37z883z1sw4hryngz2z6w4zz5q"; depends=[gmp httr openssl rjson]; }; @@ -15456,12 +15662,11 @@ in with self; { rbibutils = derive2 { name="rbibutils"; version="2.2.13"; sha256="1hpg76iqnjji9k6cwqvgiybscl7ynbqml14k1f1x26hrpxh5q8xc"; depends=[]; }; rbin = derive2 { name="rbin"; version="0.2.0"; sha256="18g6s4m0yc1bzrymk8km553kcwi4vj16b6mxw2lmv48z7243iq87"; depends=[data_table ggplot2]; }; rbioacc = derive2 { name="rbioacc"; version="1.1-0"; sha256="0lmkfr0s90hi06llsa0v4jbcx0jd1dx3qq9h6kb67ws0q6h9y028"; depends=[BH GGally ggmcmc ggplot2 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr zoo]; }; - rbioapi = derive2 { name="rbioapi"; version="0.7.7"; sha256="12lwm9x2z9bvnksp6qpqllz2mg45iia4cvv5pqr7rh7p9gwibqsm"; depends=[httr jsonlite]; }; + rbioapi = derive2 { name="rbioapi"; version="0.7.9"; sha256="05fi705pn2lfzdn8s7465c9239fffnbllbk6b3mi7vam9ivw3ixr"; depends=[httr jsonlite]; }; rbiom = derive2 { name="rbiom"; version="1.0.3"; sha256="13nma1s3p4bzh8mvikrnmkqyyrx9axvxavq6fyk2w0j804w1qzcg"; depends=[magrittr openxlsx plyr R_utils Rcpp RcppParallel rjson rlang slam]; }; rbiouml = derive2 { name="rbiouml"; version="1.11"; sha256="1g1q6xc8x8y71ji75c5fl35sxxss964xmhcqlriybb5zc38m1dh0"; depends=[RCurl RJSONIO]; }; - rbison = derive2 { name="rbison"; version="1.0.0"; sha256="0g586hsqci4amci10zjq6xpjvxfjr6rv5i63vp85v3z6bkwfamwr"; depends=[crul data_table dplyr ggplot2 jsonlite mapproj plyr sp tibble]; }; rbit = derive2 { name="rbit"; version="1.0.0"; sha256="09ywr711gv0vgfims2vfcxk3rnd0iadzlksil0q9159yarapfc59"; depends=[R6]; }; - rblt = derive2 { name="rblt"; version="0.2.4.5"; sha256="1pfg8sgm532czz3lhpx7dmg5zik3bc0p4vdq9s0qk5zgq7nnm9sj"; depends=[data_table dygraphs hdf5r shiny xts]; }; + rblt = derive2 { name="rblt"; version="0.2.4.6"; sha256="066clmmlmczafzfgh6hbiz9grlfr613bfbr0j79kfdh8b0ga1v1s"; depends=[data_table dygraphs hdf5r shiny xts]; }; rbmi = derive2 { name="rbmi"; version="1.2.3"; sha256="1l8jnp24a01s0acv529bmxdbxzalh1i9i8h35ikkagvrhbwss8sb"; depends=[assertthat BH Matrix mmrm pkgload R6 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; rbmn = derive2 { name="rbmn"; version="0.9-5"; sha256="087i0snzfk5ng944pvy3cqnbib270p0sdmmxk9lp4ab6hi0f7618"; depends=[MASS]; }; rbokeh = derive2 { name="rbokeh"; version="0.5.2"; sha256="1h2fpzqf17pw9d09r1g1iyxsj5qma4fsk8vnar7f1z4fjyypvi6q"; depends=[digest gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; }; @@ -15473,20 +15678,22 @@ in with self; { rbtt = derive2 { name="rbtt"; version="0.1.0"; sha256="1gbsb0vmqxcl28c5nn0rz95bxrvl7i0b17lq90cj5ahbk6x9jblz"; depends=[data_table]; }; rbw = derive2 { name="rbw"; version="0.3.2"; sha256="12kldcx858gigd9sfki73rgg61smk7qcb43lx7z2r5y9dr0mwaa7"; depends=[dplyr rlang]; }; rcDEA = derive2 { name="rcDEA"; version="1.0"; sha256="012l9l61p3mw38fk3y3rcfjjjj9ds5kb1v2cwfvad2il5w6s9smv"; depends=[Benchmarking np]; }; - rcaiman = derive2 { name="rcaiman"; version="1.0.8"; sha256="1p1lvkp2a8y0cal543c8qn8aphvr8zz09393nxnag81fd0a9vwy6"; depends=[colorspace filenamer lidR magrittr pracma Rdpack spatial terra testthat]; }; + rcaiman = derive2 { name="rcaiman"; version="1.1.2"; sha256="0qjbkfp571qv2i4z50vk48wrc9k0gayil88a3z85aa9k033y6kk8"; depends=[colorspace filenamer lidR magrittr pracma Rdpack spatial terra testthat]; }; rcanvec = derive2 { name="rcanvec"; version="0.2.1"; sha256="0gsk2cfiysxjw2lrnpl2l524lvhh9nhnyyh79n8p7vykyqj711yn"; depends=[rgdal sp]; }; rcarbon = derive2 { name="rcarbon"; version="1.5.0"; sha256="1d41fi2arsj8v5ccijqzyz55safcjirax9068rsjvr01zpxq6ag8"; depends=[doSNOW foreach iterators knitr sf snow spatstat spatstat_explore spatstat_geom spatstat_linnet spatstat_model]; }; - rcartocolor = derive2 { name="rcartocolor"; version="2.0.0"; sha256="08ljaag2mnhz2671zvwji1sp003z94lz30vjidmybm9fp8piqw5g"; depends=[ggplot2 scales]; }; + rcartocolor = derive2 { name="rcartocolor"; version="2.1.1"; sha256="0lqipmrcvgjlh7ya4r3vf7qiypc2pwgqcxzmg4xmb5h5p5l37cq0"; depends=[ggplot2 scales]; }; rcbalance = derive2 { name="rcbalance"; version="1.8.8"; sha256="1kxy3nv9f3qk5azp8d6khd7skk9m4704mdimgzabrndrlb5ihyw8"; depends=[MASS plyr rlemon]; }; rcbayes = derive2 { name="rcbayes"; version="0.2.0"; sha256="1qwbpx9snqgaz7gshvyhq9ylsf59grjhx56f7cnq25h2f76km9cc"; depends=[BH dplyr magrittr Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools shiny shinythemes StanHeaders tibble tidybayes]; }; rcbsubset = derive2 { name="rcbsubset"; version="1.1.7"; sha256="0k4jgjwq0mxpxs43010j5ija8hqzwcdqljzxdymji5ndcd2gvwig"; depends=[MASS plyr rcbalance rlemon]; }; rcc = derive2 { name="rcc"; version="1.0.0"; sha256="0a77d54c9qahhsjzpa0436ddsj4j44013r7rbxm0fjz04c0d2921"; depends=[]; }; + rcccd = derive2 { name="rcccd"; version="0.3.2"; sha256="0wyh4ijiy0mm7alfkz06hnkgya87npxgz33zpaarb3phkkzjhcs2"; depends=[proxy RANN Rcpp RcppArmadillo Rfast]; }; rccola = derive2 { name="rccola"; version="1.0.2"; sha256="0i846y9l3il2y38g32cifwysca06iakqd6vs15fcwqnzm8g0sg5j"; depends=[getPass keyring redcapAPI yaml]; }; - rcdd = derive2 { name="rcdd"; version="1.5"; sha256="0zxx0qvv26ba30jkm8mvca4h59rqklay4jwazpcw7h9dzp4189jr"; depends=[]; }; + rcdd = derive2 { name="rcdd"; version="1.5-2"; sha256="15dk0805yq2fgla2nafxswwvq2lakvb6kpgwzrag5l0xbrwcvv6q"; depends=[]; }; rcdk = derive2 { name="rcdk"; version="3.7.0"; sha256="070xfs65xs0wjhm6ghhfb4sccjryaypyj07abdr9qb72s3567g18"; depends=[fingerprint iterators itertools png rcdklibs rJava]; }; rcdklibs = derive2 { name="rcdklibs"; version="2.8"; sha256="0j8r0aqvdmajglyc3zld1d2g2cggg6i3qms1ghalxxdgph555jzw"; depends=[rJava]; }; rchallenge = derive2 { name="rchallenge"; version="1.3.4"; sha256="0i402p6ccjn10ix5nln30pab5nd78hg5q4ivvgc4i99nx7aq0xpx"; depends=[knitr rmarkdown]; }; - rcheology = derive2 { name="rcheology"; version="4.2.3.0"; sha256="1gdsqwl8b4n3xya3fzdh28nfrp2a4mcgj7zlx2awkz54gi71v5dg"; depends=[]; }; + rchemo = derive2 { name="rchemo"; version="0.1-1"; sha256="18jcx4f4vs6qjhv2ypy4wgqdcprjpbi738lyr28f0ih7185fipm0"; depends=[data_table e1071 FNN signal]; }; + rcheology = derive2 { name="rcheology"; version="4.3.0.0"; sha256="1db0d3c2j4riy5sy2i9q3ik2fcqxppvijyabhp5qvgrwqxd18rba"; depends=[]; }; rchess = derive2 { name="rchess"; version="0.1"; sha256="0qnvvvwcl02rmqra9m7qnhy40cbavswbq6i0jm47x6njmr1gpfhy"; depends=[assertthat dplyr ggplot2 htmlwidgets plyr R6 V8]; }; rciplot = derive2 { name="rciplot"; version="0.1.1"; sha256="0pz5lvrm9ifhypq490cnqawr87wlh4m0812612s079b9ljsw6dr0"; depends=[dplyr ggplot2 tibble]; }; rcites = derive2 { name="rcites"; version="1.3.0"; sha256="192cdkd4pybpsdab8dzchx96385bdjsm30p8qrlw9wzmij03rx2x"; depends=[cli curl httr jsonlite]; }; @@ -15494,19 +15701,18 @@ in with self; { rcmdcheck = derive2 { name="rcmdcheck"; version="1.4.0"; sha256="1l696byn3kjq2xvz4wxybzaj6ink85h4lz3a35v2132ba5yyzm5v"; depends=[callr cli curl desc digest pkgbuild prettyunits R6 rprojroot sessioninfo withr xopen]; }; rco = derive2 { name="rco"; version="1.0.2"; sha256="1ch7ak802ri4jr10jqvhvdi6q9fhyhql15ja395xfv6j81d5cmia"; depends=[]; }; rcolors = derive2 { name="rcolors"; version="0.1.0"; sha256="19lkwd1wdwq9if957qjgrz9mq6s8x49dig8snivhw9ksffcfy4xp"; depends=[magrittr]; }; - rcompanion = derive2 { name="rcompanion"; version="2.4.26"; sha256="1ccmdrfjzchpk1d2spgk6pgpd95w84f5hwzmskalccawz4p0shls"; depends=[boot coin DescTools lmtest multcompView nortest plyr]; }; - rcompendium = derive2 { name="rcompendium"; version="1.0"; sha256="1j6hxf6hdvi90qhlzra0jkgyn7a3q4skj594b7lxg5mfkzs7zr2j"; depends=[clisymbols crayon devtools gert gh gtools renv rmarkdown rstudioapi stringr usethis xfun]; }; + rcompanion = derive2 { name="rcompanion"; version="2.4.30"; sha256="0ncg7by6zkpn3p5wkdhsb5h406m4hq5bbgpbixjvsch8vy0srn73"; depends=[boot coin DescTools lmtest multcompView nortest plyr]; }; + rcompendium = derive2 { name="rcompendium"; version="1.1"; sha256="1fjdm26x01qla660mprs2pi8slbhvmw9m2smhprg66lxvs44g71l"; depends=[clisymbols crayon devtools gert gh gtools renv rmarkdown rstudioapi stringr usethis xfun]; }; rconfig = derive2 { name="rconfig"; version="0.2.0"; sha256="0gl6xls5l19zsdja6q7y34lfad9npf2kq85h4mzdh6bm2xzg4fn6"; depends=[jsonlite yaml]; }; rcontroll = derive2 { name="rcontroll"; version="0.1.0"; sha256="0zjkjvyqq76lyg61y0cd71v6yzyavqwv8zqw3fpky7jwv7szmnii"; depends=[doParallel doSNOW dplyr foreach gganimate ggplot2 iterators lidR lubridate magrittr Rcpp RcppGSL readr reshape2 sys terra tibble tidyr viridis vroom]; }; rcorpora = derive2 { name="rcorpora"; version="2.0.0"; sha256="1b8xa81mn3afadz77576vda9b0d99f1k096drxrpqd989g993aqy"; depends=[jsonlite]; }; - rcrimeanalysis = derive2 { name="rcrimeanalysis"; version="0.4.2"; sha256="1b41f636bkr0mr72klyad4fyx5zf129c9h1523rkfkyxrlf527yx"; depends=[dplyr forecast ggmap htmltools igraph KernSmooth leaflet leafsync lubridate pals raster Rcpp rgdal sp]; }; + rcrimeanalysis = derive2 { name="rcrimeanalysis"; version="0.5.0"; sha256="0a7h3gblc69g1mkalb3yss9x609701zwd3hh4pr2v96fdmsxdpkc"; depends=[forecast ggmap htmltools igraph KernSmooth leaflet leafsync lubridate pals raster sp terra]; }; rcrossref = derive2 { name="rcrossref"; version="1.2.0"; sha256="0hqvhqmfmbhvxv555x3vjwz7rh4r2cw6wj8p3wq4hcf107r555c0"; depends=[crul dplyr DT jsonlite miniUI plyr R6 shiny stringr tibble xml2]; }; - rcrypt = derive2 { name="rcrypt"; version="0.1.1"; sha256="002r5wr0bmqbj014iz8wacj883j6gqcxc786m6p9a7zdrjpx2pqi"; depends=[]; }; rcssci = derive2 { name="rcssci"; version="0.4.0"; sha256="0q6mvss8hz3ga587vbbrg5an5519s0s4cppadixir26b988fwr2n"; depends=[Cairo dplyr ggplot2 pacman patchwork rms segmented survival survminer]; }; rct3 = derive2 { name="rct3"; version="1.0.4"; sha256="1xm5kni2mnpzby8basmwbm1abg615i4mlf6fn9jr5il94q1bdgly"; depends=[]; }; rcube = derive2 { name="rcube"; version="0.5"; sha256="1162y7fs3fsbb5jj66g9kvxxhggprlifrabqbb9lqm8rrdwhz3r9"; depends=[magrittr]; }; rda = derive2 { name="rda"; version="1.2-1"; sha256="16mf76hlhii30f2m5xlwa4gv4a5ydnla2kz6ylcka4y9668ql0rp"; depends=[]; }; - rdacca_hp = derive2 { name="rdacca.hp"; version="1.0-9"; sha256="1w8d3mzx2mip29lnb829m54vqvww3405sk241linfrywnxpmmizv"; depends=[ggplot2 vegan]; }; + rdacca_hp = derive2 { name="rdacca.hp"; version="1.1-0"; sha256="1ac558vwd0sfalmb39gaa5vrmrmj55l0lk6xp6cnig9gp60x1wcr"; depends=[ggplot2 vegan]; }; rdaisi = derive2 { name="rdaisi"; version="0.1.3"; sha256="14yp725hqhdhg266h55jrfgzx0l93659d76cvaca4imsxa3ybdcb"; depends=[httr reticulate]; }; rdatacite = derive2 { name="rdatacite"; version="0.5.4"; sha256="130wvrp1lc9xhcj3c842cqd9xbbnr1abm56j933kdjwkps542583"; depends=[crul jsonlite tibble]; }; rdataretriever = derive2 { name="rdataretriever"; version="3.1.0"; sha256="06jbsrrl4db4w1ksjy7p0ywqba1di3nf491zfpgni8bz3a90ia0w"; depends=[reticulate semver]; }; @@ -15532,13 +15738,12 @@ in with self; { rdomains = derive2 { name="rdomains"; version="0.2.1"; sha256="1gpgryfdv4dhv98nfnr15lqq9ndwi8q17rwm5z7j2klgi5d644ld"; depends=[aws_alexa curl devtools glmnet httr jsonlite Matrix R_utils urltools virustotal XML xml2]; }; rdoxygen = derive2 { name="rdoxygen"; version="1.0.0"; sha256="16907969w66xvy62k45rw10qfv4x8z6jkkc6i97vppkgnlvf4d4b"; depends=[devtools]; }; rdpower = derive2 { name="rdpower"; version="2.2"; sha256="0v598jqka5skffbzb4knfmm5hfbg6gmwjgbclv774wrxxn62sj4z"; depends=[rdrobust]; }; - rdracor = derive2 { name="rdracor"; version="0.7.2"; sha256="006m1fppdfsmvyllks4x94z8v0q1d36m3af95yw53b1vrz6v9nvx"; depends=[data_table httr igraph jsonlite purrr Rdpack stringr tibble tidyr xml2]; }; rdrobust = derive2 { name="rdrobust"; version="2.1.1"; sha256="18345w89w3phkfp4s59k10iha2ywgnrgdm61f8a9ixvhd3vv2qr0"; depends=[ggplot2 MASS]; }; rdrop2 = derive2 { name="rdrop2"; version="0.8.2.1"; sha256="02rhcq1vn349ddjkqamxb0wjb3z3m4wzkvin1mprcz4fzrjxgbdr"; depends=[assertive digest dplyr httr jsonlite magrittr purrr]; }; rdryad = derive2 { name="rdryad"; version="1.0.0"; sha256="00f1qwsbwg5jggm5b83nhk1lxyw272rv2kg77bcwqvlf3074c3mz"; depends=[crul curl hoardr jsonlite mime tibble zip]; }; - rdss = derive2 { name="rdss"; version="1.0.2"; sha256="0k3pdsygc7ckk78pkjd46babhqc9zxn6sw83g0p69p5jjiy1l4yf"; depends=[broom dataverse dplyr estimatr generics ggplot2 prediction purrr randomizr readr rlang tibble tidyr]; }; + rdss = derive2 { name="rdss"; version="1.0.4"; sha256="05sm8ha7rb0wxl0wmvjsckr0gyar8jyah2vpy8s9rqrjkayzcdd5"; depends=[broom dataverse dplyr estimatr generics ggplot2 prediction purrr randomizr readr rlang tibble tidyr]; }; rdtLite = derive2 { name="rdtLite"; version="1.4"; sha256="0m2fxwz0h4rriw62g2hp20iw6ddbq5l8n80z9xgxk49n6pfm1ywj"; depends=[curl digest gtools jsonlite knitr provViz rlang rmarkdown sessioninfo stringi XML]; }; - rdwd = derive2 { name="rdwd"; version="1.6.0"; sha256="0kd5nnxvmm383z6cadnw7dy6izni51w2zm4h65jfn5x8bk6xcnwr"; depends=[berryFunctions pbapply]; }; + rdwd = derive2 { name="rdwd"; version="1.7.1"; sha256="03gj4awyaixwh0qhghglpfp6dqv9accgahx7b50hhjbdmvgvgy47"; depends=[berryFunctions pbapply]; }; rdwplus = derive2 { name="rdwplus"; version="0.1.0"; sha256="1y4dnm2bb0w6pim4h79mv2km88s78vhsn5fhs7z45m0564hgk0x2"; depends=[raster rgrass7]; }; re2 = derive2 { name="re2"; version="0.1.2"; sha256="13cxq6zw66b0wqwv19kkgn8z9kx1p9x1z1fv9cgn1iq7v1br8gm4"; depends=[Rcpp]; }; reReg = derive2 { name="reReg"; version="1.4.5"; sha256="00mqj2klbkibrqv1fqyv3m583rg711c7xasdpbn7345846851aq8"; depends=[BB dfoptim directlabels ggplot2 MASS nleqslv optimx Rcpp RcppArmadillo reda rootSolve scam SQUAREM survival]; }; @@ -15547,7 +15752,6 @@ in with self; { reactable = derive2 { name="reactable"; version="0.4.4"; sha256="1wkamzyyl3k3772n5g4rjklkkhdb07jiax064r9alnnq5nzfdaml"; depends=[digest htmltools htmlwidgets jsonlite reactR]; }; reactablefmtr = derive2 { name="reactablefmtr"; version="2.0.0"; sha256="1r864j8ma1sas2fglw5hdkhf3lxrkri7mf2k5j8cpq7398kgzp94"; depends=[dplyr htmltools htmlwidgets magrittr purrr reactable sass shiny stringr tippy webshot]; }; reactlog = derive2 { name="reactlog"; version="1.1.1"; sha256="1njihrnq1x162nc2wk16kj1l0vpvk8xcdgjvj36arw4z8nv8wpah"; depends=[jsonlite]; }; - read_dbc = derive2 { name="read.dbc"; version="1.0.5"; sha256="1vrvxkcrk3iw5am9rsadxzf0wsr7z2mdpa5wb0v9jbhda710b4yf"; depends=[foreign]; }; read_gb = derive2 { name="read.gb"; version="2.2"; sha256="1ym285y6ii71lz3c68imvcdpw24jdxbdxzq9ia533dy5himclrg7"; depends=[rentrez]; }; read_gt3x = derive2 { name="read.gt3x"; version="1.2.0"; sha256="0xnl9vg3jvrz4zk721d1mhqpaflrgbs2vbbvfhhr3j394zlcf55b"; depends=[R_utils Rcpp]; }; readABF = derive2 { name="readABF"; version="1.0.2"; sha256="1lyjl3j62nrsml9vmgwbach9qm8mh2d2pxjj8sfbkkw79krvdnsd"; depends=[]; }; @@ -15576,16 +15780,17 @@ in with self; { readsdr = derive2 { name="readsdr"; version="0.2.0"; sha256="0s16m1cam69c83k6cdpysdfyqzh0ihyjdwdzv3hqxa9054iv5ifx"; depends=[deSolve dplyr magrittr purrr rlang stringi stringr xml2]; }; readsparse = derive2 { name="readsparse"; version="0.1.5-3"; sha256="1xqagkpapi1pqv30baa2dcglrywr69vajfp4y29smbmk26b1sas6"; depends=[Matrix Rcpp]; }; readstata13 = derive2 { name="readstata13"; version="0.10.1"; sha256="18yr7nsz80dsxxsdgyi68k7506digjawk6khnzpvk5y80yz7hyqi"; depends=[Rcpp]; }; - readtext = derive2 { name="readtext"; version="0.81"; sha256="0k782h5hns5v5h8a6qyfqck2hc15nq0awg8bsp196q4zviv5jw3c"; depends=[antiword data_table digest httr jsonlite pdftools readODS readxl streamR stringi striprtf tibble xml2]; }; + readtext = derive2 { name="readtext"; version="0.82"; sha256="13j0avf5443m46lczdznpw1zlc01psk61m5wrxks9inv0684xg1s"; depends=[antiword data_table digest httr jsonlite pdftools pillar readODS readxl streamR stringi striprtf xml2]; }; readtextgrid = derive2 { name="readtextgrid"; version="0.1.1"; sha256="03qrbmlpbjwx4ia0ydv6m9lwzalsas9pdhds82mg5f8ir0cd0qi6"; depends=[magrittr plyr purrr readr stringr tibble]; }; readwritesqlite = derive2 { name="readwritesqlite"; version="0.2.0"; sha256="1p80ghra71j83xrrsqrpqkdaylp4sl1daw1paxw9jpajw679n986"; depends=[chk crayon DBI glue hms lifecycle rlang RSQLite sf tibble]; }; readxl = derive2 { name="readxl"; version="1.4.2"; sha256="04dsia2sx958ybw1ga8ccqmqih9cv7q340pcc54cl3dyqpi08wrq"; depends=[cellranger cpp11 progress tibble]; }; readxlsb = derive2 { name="readxlsb"; version="0.1.61"; sha256="1l7lklfk6ifjq6v4m0ha5k1fxak62zac2yn698r03x41k29382f7"; depends=[cellranger Rcpp xml2]; }; - readysignal = derive2 { name="readysignal"; version="0.0.7"; sha256="19ml1fb1r23zhg9z1kbwi0sjn9qib136g36y1rrdb1j0mw12wgv8"; depends=[httr jsonlite progress rvest]; }; - realtest = derive2 { name="realtest"; version="0.2.1"; sha256="0868ng2vg91c3wsx6c13k7cii2519k1algs8a6pgf4r01jvja5pz"; depends=[]; }; + readysignal = derive2 { name="readysignal"; version="0.0.8"; sha256="0j715d5ci6bybfhw246b8ag5iikmrngnxqqrscm9mg5k8da3v1ay"; depends=[httr jsonlite progress rvest]; }; + realtest = derive2 { name="realtest"; version="0.2.3"; sha256="1k2chcxpqrl4b4xfc80b8kvkn0nw8dfbl6n1965zjzszf7qaizkp"; depends=[]; }; reappraised = derive2 { name="reappraised"; version="0.1.0"; sha256="0lfxirshmf2y8plb3cqqaynz7gai9vwd7qp96kcs219p027yw82n"; depends=[boot broom data_table dplyr epitools flextable ggplot2 ggpubr magrittr officer purrr readxl rlang tidyr vcd vcdExtra]; }; rearrr = derive2 { name="rearrr"; version="0.3.3"; sha256="1fmmfji3r5q95ssvjmc9hxhxvh808cib5571mi4l57bp4z703wy1"; depends=[checkmate dplyr lifecycle plyr purrr R6 rlang tibble]; }; reasonabletools = derive2 { name="reasonabletools"; version="0.1"; sha256="08i7wy4jic5v9ka7j716lj6p9r55sv46sqrxsy7ad6sgjvrzn0ss"; depends=[]; }; + rebib = derive2 { name="rebib"; version="0.2.2"; sha256="0ajk25yya6b3lf5ixjkr95jby576lm5v4wvpjgdgq314q9dp6fvw"; depends=[logger stringr xfun]; }; rebird = derive2 { name="rebird"; version="1.3.0"; sha256="1lsmrkp5zfwr9jr26bzw2mk2z4261ylz7qclb0a4j0ma8vrd6f5j"; depends=[assertthat dplyr httr jsonlite]; }; rebmix = derive2 { name="rebmix"; version="2.14.2"; sha256="06sizf7wf63hnc26sp4b4qjndg4bhyxicabrnh7vwp53x3x27pgg"; depends=[]; }; rebus = derive2 { name="rebus"; version="0.1-3"; sha256="0ms3dm6g0fq3jycpgjl7q7kyljxc97cczy2jj0lyviwmipdgjg9d"; depends=[rebus_base rebus_datetimes rebus_numbers rebus_unicode]; }; @@ -15594,14 +15799,14 @@ in with self; { rebus_numbers = derive2 { name="rebus.numbers"; version="0.0-1"; sha256="0drgszz0824j49c6jk9ry0cfjky7g843ldlxrx3g2vjp0v7hznj3"; depends=[rebus_base]; }; rebus_unicode = derive2 { name="rebus.unicode"; version="0.0-2"; sha256="185313wh4zpp6addfdr78pjhxzazlfwgsddwk02zrzblf4iwzjdm"; depends=[rebus_base]; }; recapr = derive2 { name="recapr"; version="0.4.4"; sha256="1grp8aczn3qjm8ihn2466v5yay60vwyf1x7jsmihgxlvgwki6dh7"; depends=[MASS]; }; - receptiviti = derive2 { name="receptiviti"; version="0.1.3"; sha256="1phq2b2v9gdiarnksc4icijb1wapq3lin91cr55al7nr7p1g9hmr"; depends=[arrow curl digest dplyr future_apply jsonlite progressr]; }; + receptiviti = derive2 { name="receptiviti"; version="0.1.4"; sha256="14d5jpfv16pjf9qjimqpxmy7ai8zav8kliq2n57k4p7mk083qmly"; depends=[arrow curl digest dplyr future_apply jsonlite progressr]; }; recexcavAAR = derive2 { name="recexcavAAR"; version="0.3.0"; sha256="0b91jbgqzkgzvk658ckk639yyz1daa0xql3qgl0kzgqg68d53x20"; depends=[kriging Rcpp]; }; rechonest = derive2 { name="rechonest"; version="1.2"; sha256="0vpff8q5p6in7vjyl62bx3wmksravcg4mpx20qlgy5ia47vyhqp2"; depends=[httr jsonlite RCurl]; }; - recipes = derive2 { name="recipes"; version="1.0.5"; sha256="1cngsfyzjh5bm8s0aa59kym3qy0q0nd3qm2k72yvb47lh910v2zx"; depends=[cli clock dplyr ellipsis generics glue gower hardhat ipred lifecycle lubridate magrittr Matrix purrr rlang tibble tidyr tidyselect timeDate vctrs withr]; }; + recipes = derive2 { name="recipes"; version="1.0.6"; sha256="13zwnavg5gbdplxwnd5ppjw1zqj6khdfaj1kzfwswsnxgh99fphh"; depends=[cli clock dplyr ellipsis generics glue gower hardhat ipred lifecycle lubridate magrittr Matrix purrr rlang tibble tidyr tidyselect timeDate vctrs withr]; }; reclin = derive2 { name="reclin"; version="0.1.2"; sha256="0bskmlysc12g5invscr0vvshy8bp1gxjx4wihwbbfzmnk2951qrc"; depends=[dplyr ldat lpSolve lvec Rcpp stringdist]; }; reclin2 = derive2 { name="reclin2"; version="0.2.0"; sha256="1139fx544hi1g1la81rwndbad5r2wi21g4yj2yh6l8w7m8xbn56z"; depends=[data_table lpSolve Rcpp stringdist]; }; recluster = derive2 { name="recluster"; version="2.9"; sha256="1nz5w4v5hhb3qjwxixc526gqsmr1imw582l9gj2acwar4z9mixjp"; depends=[ape cluster phangorn phytools picante plotrix vegan]; }; - recmap = derive2 { name="recmap"; version="1.0.11"; sha256="08gbbgm6494s490lw9c85j1bvmd6wnk9r43dh8x4lijb3fhs0dq0"; depends=[GA Rcpp sp]; }; + recmap = derive2 { name="recmap"; version="1.0.15"; sha256="1973lx65ifyrsxip4qyhba2is45riknaja1x84ybj2l9a9y12d4l"; depends=[GA Rcpp sp]; }; recodeflow = derive2 { name="recodeflow"; version="0.1.0"; sha256="0qi5y1rbdw6dcvkl8gw9fh7rcb0f6ckig8464sgxslgf7cdk2gcz"; depends=[dplyr haven magrittr sjlabelled stringr tidyr XML]; }; recoder = derive2 { name="recoder"; version="0.1"; sha256="0wh0lqp7hfd4lx2xnmszv1m932ax87k810aqxdb6liwbmvwqnfgd"; depends=[stringr]; }; recogito = derive2 { name="recogito"; version="0.2.1"; sha256="0hirzw446r192gdvscgqmm7n3bh2fy0qkf9pqnqm2vziv1cqf1bq"; depends=[htmltools htmlwidgets jsonlite]; }; @@ -15615,7 +15820,7 @@ in with self; { reconstructKM = derive2 { name="reconstructKM"; version="0.3.0"; sha256="0fxdmvkm68g114nx2r2r8gy2lwqc5wkfcls7fpdfdfg0aazqqxwq"; depends=[dplyr magrittr rlang survival survminer]; }; reconstructr = derive2 { name="reconstructr"; version="2.0.4"; sha256="05nvp19fkmyr2sc7k5qjz2521f8nrzxvjdbnqa148qs0mac84b16"; depends=[openssl Rcpp]; }; recorder = derive2 { name="recorder"; version="0.8.2"; sha256="1j3fqqp5vi8z3hxqgb887v9r8x0cl5jikiyx3c7arwna7k89215a"; depends=[crayon data_table]; }; - recosystem = derive2 { name="recosystem"; version="0.5"; sha256="0xpkq500cbq6vzgwq5scq8bj33nrjj94n39zza2cm1fnars6msjq"; depends=[float Rcpp RcppProgress]; }; + recosystem = derive2 { name="recosystem"; version="0.5.1"; sha256="01d8r1pwvd606cbs9bq2rq3ahq7jnfgak9p58ch4fs4ki5nxf1sj"; depends=[float Rcpp RcppProgress]; }; recurrentpseudo = derive2 { name="recurrentpseudo"; version="1.0.0"; sha256="1vnljzn933k4wcc751r6s67dfjz1mrwvcb37yziv6qn8zimn8xrz"; depends=[dplyr geepack magrittr prodlim stringr survival]; }; recurse = derive2 { name="recurse"; version="1.1.2"; sha256="0bdm2nd8cq64dwz9b2hnbjv6c3fwpy7gnmbfi6p49nf285p8y632"; depends=[Rcpp]; }; red = derive2 { name="red"; version="1.5.0"; sha256="0hsmzw3cc3kkiaqhbn0p2fm6biqq0ka9rmv6gcv74nxjzlvl6vvp"; depends=[BAT dismo gdistance geosphere jsonlite maptools raster rgdal rgeos sp]; }; @@ -15626,7 +15831,7 @@ in with self; { redditadsR = derive2 { name="redditadsR"; version="0.1.0"; sha256="00kn34d8277f8m4xigr28lpq4s55lvli4xw70g4cbsir7m6ibklv"; depends=[jsonlite]; }; redist = derive2 { name="redist"; version="4.1.1"; sha256="0gvcsbb169apkyg0h35y67js48q995n5dzr4krhv0ihp2qba91ky"; depends=[cli doParallel doRNG dplyr foreach ggplot2 patchwork Rcpp RcppArmadillo RcppThread redistmetrics rlang servr sf stringr sys tidyselect vctrs]; }; redistmetrics = derive2 { name="redistmetrics"; version="1.0.2"; sha256="1jq4qz43j7qjzx2pac3i1p2h331pgj8z9zfg4s1dhn56rwscn8f5"; depends=[cli doParallel dplyr foreach geos magrittr Rcpp RcppArmadillo rlang sf wk]; }; - redland = derive2 { name="redland"; version="1.0.17-16"; sha256="1nzxyczsz274751z48glh8qzv1v9rdv3raq6whyp63nsi2xdri90"; depends=[roxygen2]; }; + redland = derive2 { name="redland"; version="1.0.17-17"; sha256="135cfxn81dsafrnlcf7plp0d5hhdrw6w7kyjbrp65svky1fb0zsy"; depends=[roxygen2]; }; redlistr = derive2 { name="redlistr"; version="1.0.3"; sha256="003jxfmj1gryw77vnrvaxmpvjbshlq53wgcrj02mcywfcqzg4jcr"; depends=[plyr raster rgeos sp]; }; redoc = derive2 { name="redoc"; version="2.0.0.49"; sha256="06nfqw6xs0ij21mjbqk9sdvhhh0pqf6fwankvagsbyrv742g7qkx"; depends=[jsonlite]; }; redux = derive2 { name="redux"; version="1.1.3"; sha256="1bbn2aznhfh78gbqq0g2n5lbg1q9aa7v8py3xv9gk97rg27jz49x"; depends=[R6 storr]; }; @@ -15649,14 +15854,14 @@ in with self; { regclass = derive2 { name="regclass"; version="1.6"; sha256="0m974k3yhf0dgv5f1qjs8c53mam0cll3cjn35ywfrmlfla0wlhf5"; depends=[bestglm leaps randomForest rpart rpart_plot VGAM]; }; regexPipes = derive2 { name="regexPipes"; version="0.0.1"; sha256="1hk0rhvmgzcyf5cyl8hjznl3ll25kpasqikfr6nxd6ian2slvmmb"; depends=[]; }; regexSelect = derive2 { name="regexSelect"; version="1.0.0"; sha256="0xnb9qa8l63ang4r40ky4qhlrs5mbzvmj98dgij26j3mq1ys1pa7"; depends=[shiny shinyjs]; }; - regfilter = derive2 { name="regfilter"; version="1.0.2"; sha256="0b0msgx2ffcbd8aijxknwb54ha38dqbvgzwsggf4v7mlpqga1qm0"; depends=[e1071 FNN gbm modelr nnet randomForest rpart]; }; + regfilter = derive2 { name="regfilter"; version="1.0.3"; sha256="0ll3mikssqghn58mf1qspd1zbnx2vwk7rpmnp0vb4szci4gmz87x"; depends=[e1071 FNN gbm modelr nnet randomForest rpart]; }; reghelper = derive2 { name="reghelper"; version="1.1.1"; sha256="0v1987rs6kcpizfhrp3hxsyx9arn5vsbapjfgj9478j73mm844ji"; depends=[ggplot2 lme4 MASS nlme]; }; regional = derive2 { name="regional"; version="0.3.3"; sha256="0gwm3lqmils8dpv0g0919caqifa90lv3vrjqcky33i7jd18c20g2"; depends=[philentropy terra]; }; regioncode = derive2 { name="regioncode"; version="0.1.1"; sha256="1h5qbpcfgl86g0cy5nz9vvwzqsp335lqhl4djil3k3mab38k778d"; depends=[dplyr knitr pinyin textshaping]; }; regions = derive2 { name="regions"; version="0.1.8"; sha256="16i0w1my9zfwh0p9qvc3vcid0r6rb6gbvvrx03vbg81l6cxrglr4"; depends=[assertthat countrycode dplyr glue here magrittr purrr readxl rlang stringr tibble tidyr tidyselect]; }; registr = derive2 { name="registr"; version="2.1.0"; sha256="033kvhcx27g0vw85gi8xb035wijqb6xsg8jjskqpp4l1gw3a1v1c"; depends=[dplyr gamm4 lme4 magrittr MASS Matrix mgcv pbs purrr Rcpp RcppArmadillo tidyr]; }; registry = derive2 { name="registry"; version="0.5-1"; sha256="1k3j6dx350awamr0dwwgkhfs46vsnj4nf08iw5byq0x7n3nkdsnz"; depends=[]; }; - reglogit = derive2 { name="reglogit"; version="1.2-6"; sha256="1nnn8n5sqhbd3nzmwnpmcsmaxxxaqwbna7xm7q9vk4cqz9cm9b9s"; depends=[boot Matrix mvtnorm]; }; + reglogit = derive2 { name="reglogit"; version="1.2-7"; sha256="0mknx71h24kbh4agarkhrfp2wz1kjvd34kv0c6qy0f1jwvr3kzr6"; depends=[boot Matrix mvtnorm]; }; regmed = derive2 { name="regmed"; version="2.1.0"; sha256="1m74865y2pahk50a149nv8aqkiilg23hbyijwmdcpqgi94ys40h3"; depends=[glasso gtools igraph knitr lavaan Rcpp RcppArmadillo]; }; regmedint = derive2 { name="regmedint"; version="1.0.0"; sha256="1rysxdci13r08y79fyd5h5idl2ip4i7b8v4x6n2rlc0vwi5wc61a"; depends=[assertthat Deriv MASS Matrix sandwich survival]; }; regnet = derive2 { name="regnet"; version="1.0.0"; sha256="0qb24idmdgk54rwziq6hqip584i4hvai6pj26zva2383gargxa3d"; depends=[glmnet igraph Rcpp RcppArmadillo]; }; @@ -15684,7 +15889,7 @@ in with self; { relations = derive2 { name="relations"; version="0.6-13"; sha256="1nnr0kcr3whbwzi36sg7wn46jp7r0hfkvcwlybvjsjhczcvc6ngq"; depends=[cluster sets slam]; }; reldist = derive2 { name="reldist"; version="1.7-2"; sha256="1j99j9a0igb9nwkp7fkqqkmvyz770xmbi1d25pbnaz7d2jy6q26r"; depends=[densEstBayes mgcv]; }; relen = derive2 { name="relen"; version="1.0.1"; sha256="0br7c3j30a1yc61pyinmk5lvk8zw9rivd0z2096g6crgmbzix8ml"; depends=[]; }; - relevance = derive2 { name="relevance"; version="1.3"; sha256="185fb5vjq1l6q1yz4qyvm2qli1xpp3wc4d1s17y28daljmdijlw8"; depends=[]; }; + relevance = derive2 { name="relevance"; version="2.0"; sha256="1n6b8b0mg60i4zmj9008wz49jq0i6b7wbs9hz0lr7d2cjvfnhf07"; depends=[]; }; relevent = derive2 { name="relevent"; version="1.2-1"; sha256="13nvz6gsjqm10hc9fy9vf4x39grj65ynlmy9v4fww02pzih89zjj"; depends=[coda sna trust]; }; relgam = derive2 { name="relgam"; version="1.0"; sha256="0bfsk2pc3vdk8wgdfpz80x0f9p0z37sq114swqn6z11p298hwf2x"; depends=[foreach glmnet]; }; reliabilitydiag = derive2 { name="reliabilitydiag"; version="0.2.1"; sha256="1gi1ym48fl0n5migaav8sqz62xa567c68p5f3w9l1y3pqdqrw0qw"; depends=[bde dplyr ggExtra ggplot2 magrittr purrr rlang tibble tidyr vctrs]; }; @@ -15702,12 +15907,12 @@ in with self; { remiod = derive2 { name="remiod"; version="1.0.2"; sha256="1darwljspxm6mkkp0d7xx375kvhlfwpzxc93yr2mb0mwi2877yi9"; depends=[coda data_table doFuture foreach future ggplot2 JointAI mathjaxr Matrix mcmcse ordinal progressr rjags survival]; }; remote = derive2 { name="remote"; version="1.2.1"; sha256="1ihzjxbvas7396cwsi9am4pl94naxa9dnhbnh8k0l5p4a50mk33w"; depends=[gridExtra latticeExtra mapdata raster Rcpp scales]; }; remotes = derive2 { name="remotes"; version="2.4.2"; sha256="05m5dgv0nba5vhjbdkd8z5lbhpfxgkw31j58am7vz1d44igqgvzj"; depends=[]; }; - rempsyc = derive2 { name="rempsyc"; version="0.1.1"; sha256="1lhy11vqj7jj8g071mzx0mwhgm6mhfqfgfpi3x4a7qqk4svl9888"; depends=[dplyr rlang]; }; + rempsyc = derive2 { name="rempsyc"; version="0.1.2"; sha256="19k6hbkmzqmnw9yvjx3s7s34yav21i0ddzf7f3ixl064nxbdfacy"; depends=[dplyr rlang]; }; remss = derive2 { name="remss"; version="1.0.1"; sha256="15s3qvcfyp1880ddzpvgiw3q5av21052iy1vnpw0hib5pb7xfkfb"; depends=[survival]; }; renderthis = derive2 { name="renderthis"; version="0.2.0"; sha256="1hvqwq2w30j29pwjm498mza9zxg8ga5bizm795hmdbz1k30m4j3p"; depends=[cli digest fs jsonlite magick pagedown progress quarto rmarkdown withr xaringan zip]; }; renpow = derive2 { name="renpow"; version="0.1-1"; sha256="0kbfpzr17fvf5zzxpzdhvfmrqmlkba2w3rzxl5q5ac1w3h75gfhc"; depends=[]; }; rentrez = derive2 { name="rentrez"; version="1.2.3"; sha256="0x1g2f6hvkqqlb39z8m5qxhcvsizddic5i7rpqw0wy77xfbna9gv"; depends=[httr jsonlite XML]; }; - renv = derive2 { name="renv"; version="0.17.2"; sha256="1qar7s3zdnhqsi6am6f58wg3ygpwv73qmrcp36glz0galzigc0y2"; depends=[]; }; + renv = derive2 { name="renv"; version="0.17.3"; sha256="1w7mwk3drf3bzfyhsy6mlnpbhgp8il8is7q95ad567ry4g6jhkqw"; depends=[]; }; renz = derive2 { name="renz"; version="0.1.1"; sha256="0xanqqyz8cq8vfxy7vfxcf6fyh8r28bqpc7820fbl77g960cx5jw"; depends=[VGAM]; }; repairData = derive2 { name="repairData"; version="0.1.0"; sha256="1l5ag952165b0nm59mp9v768dp53xm51ckg01i4c6l04qfzx1lm7"; depends=[]; }; repana = derive2 { name="repana"; version="1.23.2"; sha256="1wic76sln37qjdrviaz689c5gjf4pc3ffdgvzcvjh0kjvl7d8jfh"; depends=[config DBI dplyr lubridate magrittr openxlsx pool processx readr rmarkdown rstudioapi]; }; @@ -15728,7 +15933,7 @@ in with self; { reportROC = derive2 { name="reportROC"; version="3.6"; sha256="1hfgyikd7l14yfr2cnabjbb67svydj1snfcagc4w4fxhdwqhd3f2"; depends=[pROC vcd]; }; reportReg = derive2 { name="reportReg"; version="0.3.0"; sha256="0qwrpn61x69hmgln5fpc58dqfa3pba0lgjjyj0f3fh96wc9jyhq1"; depends=[nlme]; }; reportRmd = derive2 { name="reportRmd"; version="0.0.2"; sha256="07vk3wmcr47bfjnldfrs2j3dhq5yw9h6l14jahn7hzz5ap2zj0jq"; depends=[aod cmprsk geepack ggplot2 ggpubr gridExtra kableExtra knitr MASS pander plyr rlang rstatix scales survival]; }; - reporter = derive2 { name="reporter"; version="1.3.9"; sha256="0g5b2q2sp8zhajvxqsz86cnalcp6cs0lfw2s4jiwsxfrwc5s3a14"; depends=[common crayon fmtr glue jpeg stringi withr zip]; }; + reporter = derive2 { name="reporter"; version="1.4.1"; sha256="1vpqb0s86p8dh7l3his31cjidhm7vxzfgqsjap3rfb6sq7hblzx6"; depends=[common crayon fmtr glue jpeg stringi withr zip]; }; reportfactory = derive2 { name="reportfactory"; version="0.4.0"; sha256="0mkk9gyd3l6m33mkc6w3fmgrzc6na03kwxxwgn0zb83bjpmyyl1z"; depends=[callr fs knitr rmarkdown rprojroot rstudioapi yaml]; }; reportr = derive2 { name="reportr"; version="1.3.0"; sha256="0zynplxqvbmf23cm2rsz3wz2jx6mv55z94mn1k44ny3lx625cnpw"; depends=[ore]; }; reporttools = derive2 { name="reporttools"; version="1.1.3"; sha256="0sx89qb66lczmzcsybxac4razcncf2xcxr0vfkvb3f8jqc7xwcik"; depends=[xtable]; }; @@ -15737,9 +15942,9 @@ in with self; { represtools = derive2 { name="represtools"; version="0.1.3"; sha256="00hnvzkkcl9d3k115i5l9gs0wah5d11amn7q62m1j158lkqlcfza"; depends=[whisker]; }; reprex = derive2 { name="reprex"; version="2.0.2"; sha256="14khx09yzn97xhags48lvym1g37h1l2ymvw6r1jlldhjc7i1cnx8"; depends=[callr cli clipr fs glue knitr lifecycle rlang rmarkdown rstudioapi withr]; }; reproducer = derive2 { name="reproducer"; version="0.5.1"; sha256="1xv1rdhpcg0jhqax28y8y8zyr1r4rvgxaqmbj932p1q757r6cawi"; depends=[dplyr GetoptLong ggplot2 gridExtra httr jsonlite lme4 MASS metafor nortest openxlsx readr reshape stringr tibble tidyr xtable]; }; - reproducible = derive2 { name="reproducible"; version="1.2.16"; sha256="1bj6hm2q8747iawwicjlljvn1jz34vrfyrff1385qc6z3bf4ql7c"; depends=[data_table DBI digest fpCompare glue lobstr magrittr raster rlang RSQLite sp]; }; + reproducible = derive2 { name="reproducible"; version="2.0.2"; sha256="097504wd3di0yk70yz8d0jask6dkc131vr0l8ynkfih6bq6pam5d"; depends=[data_table digest filelock fpCompare lobstr]; }; reproj = derive2 { name="reproj"; version="0.4.3"; sha256="0bcg5bz2sl4d31iwr55nwr85p1jna9fpbcli26lf04dwznwmx0rl"; depends=[crsmeta PROJ proj4]; }; - repsd = derive2 { name="repsd"; version="1.0.0"; sha256="1q04n97jl5xvagzcl3cfsvshws95qdvwcl8lhfyhazd1k602lyck"; depends=[progress]; }; + repsd = derive2 { name="repsd"; version="1.0.1"; sha256="102rnc2g31aijhwsmad86k2wjcvbvzi51c2rp0wk711riq5v7cm1"; depends=[progress]; }; repurrrsive = derive2 { name="repurrrsive"; version="1.1.0"; sha256="123hf7qhhs4jyjbmw4246zmhyngjq7r9ihgg3nxg594kja40khd9"; depends=[tibble]; }; reqres = derive2 { name="reqres"; version="0.2.5"; sha256="1j8gxacbfnaqvrhjqy851yb8shc73issv08yca6mbnx6aq34wcrd"; depends=[assertthat brotli jsonlite R6 stringi urltools webutils xml2]; }; request = derive2 { name="request"; version="0.1.0"; sha256="1q7zd6q00gdqmgq7s7nq1ixmns8zn2amr5zah9rwnsn8dkllj9yh"; depends=[curl httr jsonlite lazyeval magrittr R6 whisker]; }; @@ -15752,14 +15957,15 @@ in with self; { resampledata = derive2 { name="resampledata"; version="0.3.1"; sha256="1nxjqvxxvycccmh1n7lpc4k8zmwnciicfr5rzfid1icij5fzw3ak"; depends=[]; }; resampledata3 = derive2 { name="resampledata3"; version="1.0"; sha256="1nankfkvf1cncm0p4qnwdamxinaggaga9654w2bmh6363fkc40j0"; depends=[]; }; rescue = derive2 { name="rescue"; version="1.0.3"; sha256="0wq4ka1a7yhbjwr99ngykhn2r3czn3rqi63r6jn46pz15vnicwad"; depends=[data_table dbscan igraph irlba Matrix reticulate]; }; - resemble = derive2 { name="resemble"; version="2.2.1"; sha256="1r1wanqwb7i9dr1himdgp9sl5c0582rixlf240rczfr7c4skn5mp"; depends=[data_table foreach iterators lifecycle magrittr mathjaxr Rcpp RcppArmadillo]; }; + resde = derive2 { name="resde"; version="1.1"; sha256="016m9z4agwklq7704vsic8ykyla1b1vj6rgkwjmirpfa11wqn3h1"; depends=[Deriv nlme]; }; + resemble = derive2 { name="resemble"; version="2.2.2"; sha256="1qf1g0cq593lnvzac4z1v04bjp10aza786pfaivs74m726ihmzq6"; depends=[data_table foreach iterators lifecycle magrittr mathjaxr Rcpp RcppArmadillo]; }; reservoir = derive2 { name="reservoir"; version="1.1.5"; sha256="1qvjq8j2gxp6b8m3k3822f9na8a1kbwzzsmq70m763dcq293rgiz"; depends=[gtools]; }; reservoirnet = derive2 { name="reservoirnet"; version="0.2.0"; sha256="0x87jglv7zyldagrz1kz68xi9l4j920zgpsbpzbj1ksxi2ypp98s"; depends=[dplyr ggplot2 ggpubr janitor magrittr reticulate rlang testthat]; }; reservr = derive2 { name="reservr"; version="0.0.1"; sha256="1p6k561hj4127g1mi5xwic8zmnj3mvklpc4a38ki5cgvw84kb6xa"; depends=[assertthat BH generics glue keras matrixStats nloptr numDeriv purrr R6 Rcpp RcppArmadillo RcppParallel rlang]; }; resevol = derive2 { name="resevol"; version="0.3.0.1"; sha256="13whjldpidagyaqh2s7isvs8qms6zw82v067h4zyrzfzh6q3xsa8"; depends=[]; }; reshape = derive2 { name="reshape"; version="0.8.9"; sha256="0j203qmc076x5lp6q2xi4dq4xdb73jmsa42rpxp1c37knnrph4br"; depends=[plyr]; }; reshape2 = derive2 { name="reshape2"; version="1.4.4"; sha256="1n0jrajpvc8hjkh9z4g8bwq63qy5vy5cgl2pzjardyih4ngcz3fq"; depends=[plyr Rcpp stringr]; }; - resourcer = derive2 { name="resourcer"; version="1.3.0"; sha256="1glsmv5r7fgyn8sz8mk1i4n160hj02hyksncj8hgml3k5iips10s"; depends=[httr R6]; }; + resourcer = derive2 { name="resourcer"; version="1.4.0"; sha256="0rffkz2ybvr58jpa3kfiw4s3rk0cmrm9r5ca2abbzlcny7kxb7v5"; depends=[httr R6]; }; respR = derive2 { name="respR"; version="2.2.0"; sha256="16ip821xczl5qs1l0dgi1swglfv0vcwqrs4bwwjcfsdy1am775xj"; depends=[data_table dplyr glue lubridate magrittr marelac purrr readxl roll segmented stringr xml2]; }; respirometry = derive2 { name="respirometry"; version="1.3.0"; sha256="1ffhkvf8a8zhkysghd636k47bl7k5bdwkkg4m0pr1zlxpfrif82c"; depends=[birk lubridate marelac measurements minpack_lm PKNCA seacarb segmented]; }; responsePatterns = derive2 { name="responsePatterns"; version="0.1.0"; sha256="0iyx35kq82w18v8c7lfz7x31c2cgywn4xh8hg0ad3gsdygadq8hq"; depends=[]; }; @@ -15800,8 +16006,9 @@ in with self; { rfPermute = derive2 { name="rfPermute"; version="2.5.1"; sha256="156vaxkjs5959bh4fh65zqfy8p7ag66abizx6n3wj6q078048jvj"; depends=[abind dplyr ggplot2 gridExtra magrittr randomForest rlang scales swfscMisc tibble tidyr]; }; rfUtilities = derive2 { name="rfUtilities"; version="2.1-5"; sha256="1anwvmxn3xrc1aqxl75rzlk4wby8l54rmkp0bgi8dgbz2l223xr0"; depends=[cluster randomForest]; }; rfVarImpOOB = derive2 { name="rfVarImpOOB"; version="1.0.3"; sha256="1f0ljy51xqqrncdg4xpic6ir8zlgvp952pr0s217v7ybgdzs42v6"; depends=[dplyr ggplot2 ggpubr magrittr randomForest ranger titanic]; }; - rfacebookstat = derive2 { name="rfacebookstat"; version="2.8.1"; sha256="16d0v5vglxc412zcnm343mkwxk4sv69xlgp9i9xka9vzvz9n5bfh"; depends=[dplyr httr jsonlite pbapply purrr stringr tidyr tidyselect]; }; + rfacebookstat = derive2 { name="rfacebookstat"; version="2.9.3"; sha256="0g4fgl7d77h3wdp2r7r3smlfsykcfr1gm6chha02z4qg2159ldnk"; depends=[dplyr httr jsonlite pbapply purrr stringr tidyr tidyselect]; }; rfacts = derive2 { name="rfacts"; version="0.2.1"; sha256="0h2ryyl5zc3pxi85y0qwadfz7sdzz0m6ilwzabw317sb0z5lms5b"; depends=[digest fs tibble xml2]; }; + rfars = derive2 { name="rfars"; version="0.3.0"; sha256="0cbq37x0c045ld50bpsgh59nr5pb34r5g584bf8rcqylvdnkpa6s"; depends=[data_table downloader dplyr haven janitor lubridate magrittr purrr readr rlang sas7bdat stringr tidyr tidyselect zoo]; }; rfieldclimate = derive2 { name="rfieldclimate"; version="0.1.1"; sha256="0g22lkz8pygmgrj138y15ldcacr6im7gxq579wfrgjaxs3q8ymcp"; depends=[digest dplyr httr jsonlite lubridate magrittr purrr tidyr]; }; rfigshare = derive2 { name="rfigshare"; version="0.3.8"; sha256="10shwl1y9220m7ld5w9fjsjzy5yg8myrz9cz97ps9z2bw7bvka5j"; depends=[ggplot2 httpuv httr RJSONIO XML yaml]; }; rfinterval = derive2 { name="rfinterval"; version="1.0.0"; sha256="1z7v0sbql6g2h3fr1268nj79rbx1d33hjfaraxhbikrjgb8mbp0w"; depends=[MASS ranger]; }; @@ -15819,7 +16026,7 @@ in with self; { rfviz = derive2 { name="rfviz"; version="1.0.1"; sha256="1pxr9bsqg27vgbngj89hhjq0gyzgdlg69rz6kzvvd8gclg42wisv"; depends=[loon randomForest]; }; rgabriel = derive2 { name="rgabriel"; version="0.9"; sha256="1za8njmasl7kmmiqgxhr8k2p1kygkadkqgim9wgyjkcnzljg46kb"; depends=[]; }; rgbif = derive2 { name="rgbif"; version="3.7.7"; sha256="1f2qi0vs8s1gxhqvvh6jyswv0p4c29ycm912hswxgc93v6rzghsg"; depends=[crul data_table ggplot2 jsonlite lazyeval magrittr oai R6 tibble whisker wk xml2]; }; - rgdal = derive2 { name="rgdal"; version="1.6-5"; sha256="0r0x5ifxhgbn2b6m9xwvr99i9llybfjjxrx3lvb57vq342js6yhc"; depends=[sp]; }; + rgdal = derive2 { name="rgdal"; version="1.6-6"; sha256="16irhw858771bc8ikshxk3ddpd7ymwgqmhnac4g7f160vymdfhnp"; depends=[sp]; }; rgdax = derive2 { name="rgdax"; version="1.2.1"; sha256="01hpyyhb6jcw9w0q9h4ghgh4cbba27mfl9zdv4vv4ppakvl80czl"; depends=[digest httr jsonlite plyr RCurl]; }; rgee = derive2 { name="rgee"; version="1.1.5"; sha256="1yq0k935p23qgwaffda8zk5p5546z5i27kivyqf8hg461cn73b3x"; depends=[cli crayon jsonlite leafem leaflet magrittr processx R6 reticulate rstudioapi]; }; rgeedim = derive2 { name="rgeedim"; version="0.2.2"; sha256="1k4lkm2h0kxs6jbshxhrzcdmf1lganwq0i4c63lw2kszjf5shkgk"; depends=[jsonlite reticulate]; }; @@ -15830,7 +16037,7 @@ in with self; { rgeomstats = derive2 { name="rgeomstats"; version="0.0.1"; sha256="1fy5fvkifv80sf3x0d2y3vyv7adn0h57q1hvip1phcvxg8p5prff"; depends=[cli purrr R6 Rdpack reticulate rlang]; }; rgeopat2 = derive2 { name="rgeopat2"; version="0.3.9"; sha256="0l0sqkvjkzp4lmyk55l7zc02y04sa43cps47005gq8c38kyks45k"; depends=[readr sf stringr]; }; rgeoprofile = derive2 { name="rgeoprofile"; version="0.2.2"; sha256="1nk3qzwcvvq3n1da480zk047wl738fjyvarakm00wwrbnb3ax70j"; depends=[geosphere leaflet pals RANN raster sp spatstat_geom splancs]; }; - rgeos = derive2 { name="rgeos"; version="0.6-2"; sha256="1bz0kyjlk8ki3379j9g06sw4lqic57w1qkaxqn591mr01j5vpqif"; depends=[sp]; }; + rgeos = derive2 { name="rgeos"; version="0.6-3"; sha256="0g1bzhkvz0n5m6s1y7xi4fgjnnjjl6dkf9nf24w2jzfgzncmmg0y"; depends=[sp]; }; rgexf = derive2 { name="rgexf"; version="0.16.2"; sha256="00c2zka1n3k7p1l0mlchr063s6x58p9r3fb64d4wgl4rvsq55q3f"; depends=[igraph servr XML]; }; rgho = derive2 { name="rgho"; version="3.0.0"; sha256="0wy7vl2ak4ik7bmvdlkqg4a0b0ykc9rafki8hh1gsjml0cc5yhrf"; depends=[curl dplyr httr lifecycle magrittr ODataQuery rlang tibble tidyr]; }; rgl = derive2 { name="rgl"; version="1.1.3"; sha256="1blasg60x38z57ds6x7yb4rvjx21yf4s99q93sl1w9h6mg14d8jg"; depends=[base64enc htmltools htmlwidgets jsonlite knitr magrittr mime R6]; }; @@ -15839,7 +16046,7 @@ in with self; { rglplus = derive2 { name="rglplus"; version="1.1"; sha256="1i9i62214yljaxplzk8qk9dbslj1shgddmdvpqj35nr45pavnnqm"; depends=[rgl]; }; rglwidget = derive2 { name="rglwidget"; version="0.2.1"; sha256="0siqxn3gyl98i84p0yha821b4rdrp2i0942mkx819wnf7qwrpqcv"; depends=[rgl]; }; rgnparser = derive2 { name="rgnparser"; version="0.2.6"; sha256="17s08arj7hdzmm2cbmwk4cvdlgrviyjsfm8qpvc5j7sjd6b48sdq"; depends=[jsonlite readr sys tibble]; }; - rgoogleads = derive2 { name="rgoogleads"; version="0.9.1"; sha256="0vsns2kizhn353q9sv5lgpcsc1h0sxvxyliqi6z6gaanky27vwm4"; depends=[cachem cli dplyr gargle httr jsonlite memoise pbapply purrr rappdirs rlang rlist rvest snakecase stringr tidyr withr]; }; + rgoogleads = derive2 { name="rgoogleads"; version="0.9.2"; sha256="03y1dvshy6cadamig1gb72knz64g96w7s965k3cgvhnihm15fwd9"; depends=[cachem cli dplyr gargle httr jsonlite memoise pbapply purrr rappdirs rlang rlist rvest snakecase stringr tidyr withr]; }; rgoogleslides = derive2 { name="rgoogleslides"; version="0.3.2"; sha256="0h9gws1vcf0zdd21d8b65c2yz9kxppp3218h5lhd5iz879ajwa2i"; depends=[assertthat httr jsonlite R6]; }; rgplates = derive2 { name="rgplates"; version="0.2.1"; sha256="0gl39l8lnxs0my1y71i2dxcwg786c8i2c6rbjq1177cwfpjrlaw8"; depends=[sf]; }; rgraph6 = derive2 { name="rgraph6"; version="2.0-2"; sha256="136imihzm2x6i9d60a8wbv2mc1v2r9rsswnic8q7kdp7l1625xa6"; depends=[Rcpp]; }; @@ -15854,7 +16061,7 @@ in with self; { rhcoclust = derive2 { name="rhcoclust"; version="2.0.0"; sha256="0ck5slv3y08vcxkdxhw5j6n3jjsg4jj6r8hkb0yhkq2k59b18rg0"; depends=[fields igraph]; }; rheroicons = derive2 { name="rheroicons"; version="1.0.0"; sha256="02yknpdgfjjkkk9456pxfl9qhaphwrhbxw7fh04ki9a1rgalk0xw"; depends=[htmltools shiny stringr]; }; rhierbaps = derive2 { name="rhierbaps"; version="1.1.4"; sha256="0717h3j9pamz0hkwcfadivhfh9n2bd9l55kvll1ipc4dz85cp324"; depends=[ape ggplot2 matrixStats patchwork purrr]; }; - rhino = derive2 { name="rhino"; version="1.3.0"; sha256="1f3mh3f3ygbifxnfrfxjx0c7d0wy9zjqy982ayds7f9iqbxh5ysj"; depends=[box cli config fs glue lintr logger purrr renv rstudioapi sass shiny styler testthat withr yaml]; }; + rhino = derive2 { name="rhino"; version="1.3.1"; sha256="176p8h3sb6zsdpdk4ahlnr12nc91zmww6m9yxzn223blphvf1k48"; depends=[box cli config fs glue lintr logger purrr renv rstudioapi sass shiny styler testthat withr yaml]; }; rhmc = derive2 { name="rhmc"; version="1.0.0"; sha256="1m79f1hx404y0k8lk3n6jnzhr6wwrk83xiym68sq1zvj0wjqiqmw"; depends=[]; }; rhnerm = derive2 { name="rhnerm"; version="1.1"; sha256="1fkh2pr4kzvqvagdyjlyab7p591s913104gyq05q170gmvlpmiww"; depends=[]; }; rhoR = derive2 { name="rhoR"; version="1.3.0.3"; sha256="0l387m6l2x3djn1liag4m49835m2mny006sjzqbravb1famrvawi"; depends=[Rcpp RcppArmadillo]; }; @@ -15872,7 +16079,7 @@ in with self; { riceidconverter = derive2 { name="riceidconverter"; version="1.1.1"; sha256="143f76v3k2q9ddcxf2nzvd04pjgy7p120ln0zkmxpal20c81dwq6"; depends=[dplyr]; }; riceware = derive2 { name="riceware"; version="0.4"; sha256="0pky0bwf10qcdgg9fgysafr35xbmnr9q0jbh56fawj99nbyj3m70"; depends=[random]; }; rich = derive2 { name="rich"; version="1.0.1"; sha256="0kasr9gb85qhngfayqy3fvrsr0a066krwxsx21nsxcnss0mrqygr"; depends=[boot vegan]; }; - ricu = derive2 { name="ricu"; version="0.5.4"; sha256="062dzfygi3zc1bn40073hmd0bq4xisz3l8winrqk540sw08mv7mm"; depends=[assertthat backports cli curl data_table fansi fst jsonlite openssl prt readr rlang tibble vctrs]; }; + ricu = derive2 { name="ricu"; version="0.5.5"; sha256="04qzfngqgcil2psnjbiwqx2wn2633mp40m1ry2ckp05sldzv7ad6"; depends=[assertthat backports cli curl data_table fansi fst jsonlite openssl prt readr rlang tibble vctrs]; }; ridge = derive2 { name="ridge"; version="3.3"; sha256="1xb03ir706k2c3y2kpa4dvnz5i0qhm2ghm7syng0kalpdz7swbaw"; depends=[]; }; ridgetorus = derive2 { name="ridgetorus"; version="1.0.1"; sha256="1agvxk27db60ggjz102d0gdv8apx2plfbyb44mkhhwmfwcpqmvvs"; depends=[circular Rcpp RcppArmadillo rootSolve sdetorus sphunif]; }; ridgregextra = derive2 { name="ridgregextra"; version="0.1.0"; sha256="08dsh09pcm9s8903lszzk2r3zi9hnvm6hzajwvqc3gkpjcs2q7bp"; depends=[isdals mctest plotly]; }; @@ -15885,14 +16092,14 @@ in with self; { rim = derive2 { name="rim"; version="0.6.0"; sha256="1h0ngckmwp2inxi87vgig8l3v2fz16dff6radvnnkzlcnv4g6g7l"; depends=[GlobalOptions knitr R6 Rcpp]; }; rimu = derive2 { name="rimu"; version="0.6"; sha256="0233dxj6z87piz88v15yg7gby0vm44mqhf76944lr8z17w2rrf8m"; depends=[ggplot2 UpSetR]; }; rinat = derive2 { name="rinat"; version="0.1.9"; sha256="05vi5fggqkj64z0sndngjs7vdvxgy2j5xarccllkcrk9mbzyipvc"; depends=[curl ggplot2 httr jsonlite maps plyr sp]; }; - ring = derive2 { name="ring"; version="1.0.3"; sha256="1ljmqq7mngxs59nri36w0cx6a6d85qsbk9v9698hfx9asicv398d"; depends=[R6]; }; + rineq = derive2 { name="rineq"; version="0.2.3"; sha256="0z8ngd11nbi0ibc3cqg20ihzhf2gcs4w4nkbb69wnyf86fxf001w"; depends=[]; }; + ring = derive2 { name="ring"; version="1.0.4"; sha256="166ma52axbmarwbzkqqcfcms9q9a4yqmsq9cqbmgpkkwm595ywij"; depends=[R6]; }; ringostat = derive2 { name="ringostat"; version="0.1.5"; sha256="1g2425jig3zhrv0vmr5nb5fqj34vcpmvbly7gc94plsv7wvgxvv3"; depends=[cli httr2 readr stringr]; }; - rintcal = derive2 { name="rintcal"; version="0.5.3"; sha256="1qknbcyy1nla1d7nmwcbd76vgr97skr8ihrklhr6iskcx8pyysj6"; depends=[data_table jsonlite]; }; + rintcal = derive2 { name="rintcal"; version="0.6.0"; sha256="0lba6jpbwingkyfcvm9557b6zj77w1mq67qy6w41980k4cjqjr0i"; depends=[data_table jsonlite]; }; rintimg = derive2 { name="rintimg"; version="0.1.0"; sha256="0jzs4mdwpzbpl0wchyhl3cpywk25ayaxalr12p4cnjl7vnmdm7dp"; depends=[glue htmltools]; }; rintrojs = derive2 { name="rintrojs"; version="0.3.2"; sha256="19lpq421hrs1wc9bnimbwxx35p8bbzil3x1h9l28gjayn4djmjsh"; depends=[jsonlite shiny]; }; rio = derive2 { name="rio"; version="0.5.29"; sha256="04jlrhyl0791yxwcpp1s8p1hhkljnijlc5iaxpk56h41w63k39lz"; depends=[curl data_table foreign haven openxlsx readxl tibble]; }; rioja = derive2 { name="rioja"; version="1.0-5"; sha256="1xggjapks2hipn946r65drq45xb7shhbac56r0njh0fm4wwmdzrj"; depends=[mgcv vegan]; }; - riot = derive2 { name="riot"; version="1.1.0"; sha256="1a5w6m443rc16fbzkmrrsisac92ch2x2psvywl5i60hlr0r88d60"; depends=[cli dplyr fs purrr Rcpp readr rlang tibble]; }; ripserr = derive2 { name="ripserr"; version="0.1.1"; sha256="1rwsd1yi5vrzdscjgr27fw0d1a6nkc8g2w5hqgqijiwm25h4wl17"; depends=[Rcpp]; }; rise = derive2 { name="rise"; version="1.0.4"; sha256="12r7mbaxp9pjypbpjxlsbqg7spw80gjgm2w0lsvgvclffc50a6ni"; depends=[dplyr ggplot2]; }; riskCommunicator = derive2 { name="riskCommunicator"; version="1.0.1"; sha256="07rfqaf5dpj0wgbz65kdxzl762w8k5a2fsfmg1g895y2i5npq6mz"; depends=[boot dplyr ggplot2 ggpubr magrittr MASS purrr rlang tidyr tidyselect]; }; @@ -15907,16 +16114,16 @@ in with self; { riskyr = derive2 { name="riskyr"; version="0.4.0"; sha256="1ki3r46d73ws0gnm93llmkv42yfm0mfwvxxafnrhsdcj5kinl4ir"; depends=[]; }; ritis = derive2 { name="ritis"; version="1.0.0"; sha256="0dk1hpj2cahlw4lcdjnnllpnvdimaml57sfcw07iz2s0f8c24yrj"; depends=[crul data_table jsonlite solrium tibble]; }; riv = derive2 { name="riv"; version="2.0-5"; sha256="0n19jlrs12iysq45xyi3zvghkircg0ww5vbsfpnqkw5b22zsv30s"; depends=[MASS quantreg rrcov]; }; - riverconn = derive2 { name="riverconn"; version="0.3.26"; sha256="0x4hpfcn82bk1cplf1fypi4dh7nc4g50341a2cwf1mjih6i218zi"; depends=[dodgr doParallel dplyr foreach igraph magrittr reshape2 rlang tidyr tidyselect]; }; + riverconn = derive2 { name="riverconn"; version="0.3.28"; sha256="063sjfp3p9ahfm9w5pb6p7hs4948fc57yw3i10mf5lcd6v12nxzx"; depends=[dodgr doParallel dplyr foreach igraph magrittr reshape2 rlang tidyr tidyselect]; }; riverdist = derive2 { name="riverdist"; version="0.15.5"; sha256="00bli01zczai8czg5p031nc83yqr3vff9n3sc999xmd3p6li4mwr"; depends=[rgdal sp]; }; rivernet = derive2 { name="rivernet"; version="1.2.1"; sha256="0p8jyigbxipwds9pdw2gzv3ql5yikg1ik4vbk4drylbp5xhmvyja"; depends=[]; }; riverplot = derive2 { name="riverplot"; version="0.10"; sha256="04ap1dsa7fx03l73jhv1ql3adaaaz2100qawdplxa9xmrllgcgbj"; depends=[RColorBrewer]; }; - rivnet = derive2 { name="rivnet"; version="0.1.0"; sha256="06b27qi8ij1x8bm2jajw39xn33l0x5kqqhwli2cxjygfk9sxz27c"; depends=[elevatr OCNet raster sf spam terra traudem]; }; + rivnet = derive2 { name="rivnet"; version="0.2.0"; sha256="076y42a5p40dnr4r9hxk2zk6qx8hcaghdsbz5hkswxz4sgbcmgl3"; depends=[elevatr OCNet raster Rcpp sf spam terra traudem]; }; rivr = derive2 { name="rivr"; version="1.2-3"; sha256="10k4cqrlzcy5g0yqbkrzxfz0dwsnf8kgmfq011lj13kxpb38bpvy"; depends=[Rcpp]; }; rjade = derive2 { name="rjade"; version="0.1.1"; sha256="0wv1vpy8ql1r9ya5mfqxdj7jv5wk029g8hjjp0xqp8dm507vj11x"; depends=[V8]; }; - rjags = derive2 { name="rjags"; version="4-13"; sha256="0cibz6xhmh86fh7ynmdgpmlchizi57pi6dpslgc2if17a56c6p7q"; depends=[coda]; }; + rjags = derive2 { name="rjags"; version="4-14"; sha256="1jz26x49zsjl95whlkjsr8h98j68ajv2gc7qqnxy732r0bvmsfri"; depends=[coda]; }; rjazz = derive2 { name="rjazz"; version="0.1.7"; sha256="0wmqlpgcr98dvapfmdcph5mdv202rzzsvb06iy5sqvpizpg7pbsz"; depends=[RCurl]; }; - rjdmarkdown = derive2 { name="rjdmarkdown"; version="0.2.0"; sha256="14ndhhxxx7jb9ljhfjxmdrl3kgb1zsrv00kznl2k50fwxx4z66f2"; depends=[kableExtra knitr magrittr RJDemetra]; }; + rjdmarkdown = derive2 { name="rjdmarkdown"; version="0.2.1"; sha256="1ls2zcq28yajb14g6zqdlyb4nliyq1905cpyrc8g8xv0b90k7gj6"; depends=[kableExtra knitr magrittr RJDemetra]; }; rjdqa = derive2 { name="rjdqa"; version="0.1.1"; sha256="0d7jv3a2a7p7h6jnr5znln06x6m4mksb6cy44xdxir1pwcd1z6br"; depends=[plotrix RJDemetra XLConnect]; }; rje = derive2 { name="rje"; version="1.12.1"; sha256="07a1wbn5ps9ygfi25fffgmrzw90izj4yk8gxb47r85x6lvqv1p0h"; depends=[]; }; rjmcmc = derive2 { name="rjmcmc"; version="0.4.5"; sha256="14rzvp6z5avlcnmlmvb6w4gvlh6v4ncbcai3v4c4svnjv555vz45"; depends=[coda madness mvtnorm]; }; @@ -15926,12 +16133,11 @@ in with self; { rjstat = derive2 { name="rjstat"; version="0.4.2"; sha256="0j79svby5zzg63pks5667jvky0m5csyyrb863lpba4aprd80pig0"; depends=[checkmate jsonlite]; }; rjtools = derive2 { name="rjtools"; version="1.0.10"; sha256="0r7q4f6xxg8dz772y4fkb2y3vkczv70m3c1kmykl2pmpdm9g09j2"; depends=[BiocManager bookdown callr cli cranlogs distill fs glue hunspell purrr rlang stringr tinytex whisker xfun yaml yesno]; }; rjwsacruncher = derive2 { name="rjwsacruncher"; version="0.1.3"; sha256="0g9wbcgj97pn2z6b9lbh10pr54c3qaam5cxghvn2ppzd8ccwkkbb"; depends=[XML]; }; - rkafka = derive2 { name="rkafka"; version="1.4"; sha256="00m9zj2fnd32dhm7gn3fclpmp9r2y06sd8yckdbhlvd784b2d4c9"; depends=[rJava rkafkajars RUnit]; }; rkafkajars = derive2 { name="rkafkajars"; version="1.2"; sha256="1z1rn02ymzaq3v3pz206wlm78y591xa9780fwf77i4vfq2k9pxrz"; depends=[rJava RUnit]; }; rkeops = derive2 { name="rkeops"; version="1.4.2.2"; sha256="1b2sdbhx1ar1325mf1xgc561as9x8q8vjqslly9xms2h572c8yn3"; depends=[openssl Rcpp RcppEigen RhpcBLASctl stringr]; }; rkt = derive2 { name="rkt"; version="1.6"; sha256="1sqij8ivjrrb1lii3jwvgsx9zqv47ib1lhrh6zvvh5a67didwrih"; depends=[]; }; rkvo = derive2 { name="rkvo"; version="0.1"; sha256="0ci8jqf9nc8hb063nckxdnp0nlyr4ghby356lxm00anw44jlmw8v"; depends=[Rcpp]; }; - rlang = derive2 { name="rlang"; version="1.1.0"; sha256="0nrk9634l05bsn9kl9zf0ylqvm9swlzic8fggkyhbp4y3kcmk67q"; depends=[]; }; + rlang = derive2 { name="rlang"; version="1.1.1"; sha256="16fsibxbh4fy62x6fw358qbniw085qs1wjyr75n22xv9g6kwjpjy"; depends=[]; }; rlas = derive2 { name="rlas"; version="1.6.3"; sha256="15jv9plpmymsbzhw518islbcxpxcjbdlrjpvhfwhsnl2qskm4g2x"; depends=[BH data_table Rcpp]; }; rlc = derive2 { name="rlc"; version="0.4.1"; sha256="1znx2749m9af3jq3avxf50amkhzvimr5ybwmk4g9vhwka86c3vqk"; depends=[hwriter jrc jsonlite plyr R6 stringr]; }; rlcv = derive2 { name="rlcv"; version="1.0.0"; sha256="00fz949jabbzci22yjlhc7bh4j2h44llplcrgsrbi3h97lrg7hc0"; depends=[statmod]; }; @@ -15944,7 +16150,7 @@ in with self; { rlibkriging = derive2 { name="rlibkriging"; version="0.7-4.3"; sha256="09q8s13sdz3n4cm5rkdq4axgfnlwd64xj6yfggg38rjwnjf5497c"; depends=[DiceKriging Rcpp RcppArmadillo]; }; rliger = derive2 { name="rliger"; version="1.0.0"; sha256="1gqdwmy073sg48id015q02bx20xsqyc6jpbw4nym3c09cqz681dr"; depends=[cowplot doParallel dplyr FNN foreach ggplot2 ggrepel hdf5r ica irlba Matrix mclust patchwork plyr psych RANN Rcpp RcppArmadillo RcppEigen RcppProgress riverplot rlang Rtsne uwot]; }; rlist = derive2 { name="rlist"; version="0.4.6.2"; sha256="15q99rhbbjq8zd976yjmfnny45dd5fg2p2dv1sljg2kwi66nbppb"; depends=[data_table jsonlite XML yaml]; }; - rlistings = derive2 { name="rlistings"; version="0.2.1"; sha256="1xjw6j57yzrh0sfhbrkh5f5b31ifcjqxj2mg4vxsbwmzp4ffc82r"; depends=[checkmate formatters tibble]; }; + rlistings = derive2 { name="rlistings"; version="0.2.2"; sha256="17fkpvs2ksyx06manmyv2iibs31khgbb4jlqn81gm6wr1i1rsy3l"; depends=[checkmate formatters tibble]; }; rlmDataDriven = derive2 { name="rlmDataDriven"; version="0.4.0"; sha256="1fhh2siafpqmvpxi2piccxvvn5n38s5d6as6iyn43rgpsslswc8g"; depends=[MASS tseries]; }; rlme = derive2 { name="rlme"; version="0.5"; sha256="0p26mw4g12l279lh80vqcjs3pvjr759ap2m622490k1i2ralxzif"; depends=[magic MASS mgcv nlme quantreg Rcpp robustbase stringr]; }; rlog = derive2 { name="rlog"; version="0.1.0"; sha256="0g9gjf37gly68drm8a8zcnwxcigm2djsm3angglzwd04mmlkgwpy"; depends=[]; }; @@ -15953,7 +16159,7 @@ in with self; { rma_exact = derive2 { name="rma.exact"; version="0.1.0"; sha256="1igs92la79akyqj84ah23lpcay7i33k7zgzcwm7sii782fhirivx"; depends=[abind metafor]; }; rmake = derive2 { name="rmake"; version="1.1.0"; sha256="00qlki2vps505nxzmfykf1iyq4b0y20nb75hbfcj63ap46z7zk3c"; depends=[assertthat pryr rmarkdown visNetwork]; }; rmangal = derive2 { name="rmangal"; version="2.1.3"; sha256="1sh3ggbp5f4p8jqjr7l5an32ikr4gcdll2d7gl7mqjayq497c865"; depends=[httr igraph jsonlite memoise]; }; - rmapshaper = derive2 { name="rmapshaper"; version="0.4.6"; sha256="03gfnxwky292ma0s2wcvmpym11qlrkn82nqxpfk5cbrc27fn8m0j"; depends=[geojsonio geojsonlint jsonlite readr sf sp V8]; }; + rmapshaper = derive2 { name="rmapshaper"; version="0.5.0"; sha256="01c1sd02ws3k2dmlj964c4j5jg93x192s3brhmaw4pi4qfjzc21x"; depends=[geojsonsf jsonify readr sf sp V8]; }; rmapzen = derive2 { name="rmapzen"; version="0.4.4"; sha256="0bxwhpikkny1r3qr03k10isdf5wclalpfaljd5qngazr1rxflmsl"; depends=[assertthat digest dplyr geojsonio httr jsonlite maps maptools purrr rgdal rgeos sf sp tibble tidyr]; }; rmarchingcubes = derive2 { name="rmarchingcubes"; version="0.1.3"; sha256="0cdmy728irmbd40xsc2k4r2g8am7s72ks7cw465fa92ml2xa6iq8"; depends=[Rcpp RcppArmadillo]; }; rmargint = derive2 { name="rmargint"; version="2.0.2"; sha256="0irq5114dd8pngl6k13r2rrsivijiqfldm6mby0q5a9wrj2vmwc9"; depends=[]; }; @@ -15981,7 +16187,7 @@ in with self; { rmonad = derive2 { name="rmonad"; version="0.7.0"; sha256="1vjx8kk57xk7c2a05c6kn75n17842ya7j41hqj3wmgq8yvaxrngx"; depends=[digest glue igraph magrittr pryr]; }; rmoo = derive2 { name="rmoo"; version="0.2.0"; sha256="180dz1b92iswfflbciss13qn730f3nx4km194wn7vci9xghsw1mf"; depends=[GA ggplot2 plotly]; }; rmpw = derive2 { name="rmpw"; version="0.0.4"; sha256="1a49rvdwvmccv4gfir48fw0b9jyrpc2q9zfyk5j9b7nxsx6x7abl"; depends=[gtools MASS]; }; - rms = derive2 { name="rms"; version="6.5-0"; sha256="11dibpjgbhlqzn97254hlp6p6wfld7bnw4j5rr0dqwynj6fq2vzx"; depends=[cluster colorspace digest ggplot2 Hmisc htmlTable htmltools lattice MASS multcomp nlme polspline quantreg rpart SparseM survival]; }; + rms = derive2 { name="rms"; version="6.7-0"; sha256="1zxv7njzaxh6ivrxcszcn128pfxqyh5ga1q8kx6v5brfgv218flb"; depends=[cluster colorspace digest ggplot2 Hmisc htmlTable htmltools knitr MASS multcomp nlme polspline quantreg rpart SparseM survival]; }; rmsb = derive2 { name="rmsb"; version="0.1.0"; sha256="1ng6c2abkw3r78l3m4k2648lmra0f6a7jy5nn8av1v1hbvisrg9n"; depends=[BH cluster digest ggplot2 Hmisc knitr loo MASS Rcpp RcppEigen RcppParallel rms rstan rstantools StanHeaders survival]; }; rmsfact = derive2 { name="rmsfact"; version="0.0.3"; sha256="05s23rfs9prr2ia3h4h9y614xhv91lbgppgf3mrrssxkwz220kd5"; depends=[]; }; rmsfuns = derive2 { name="rmsfuns"; version="1.0.0.1"; sha256="18bpj7xh3kc7pl6ivi3cripam26bsaf9r9099cjf22qndvy18hb6"; depends=[dplyr magrittr PerformanceAnalytics purrr readr tbl2xts xts zoo]; }; @@ -15991,7 +16197,7 @@ in with self; { rmutil = derive2 { name="rmutil"; version="1.1.10"; sha256="1yd5gkg4jg3rvqrfl8c5r07lcr37n1p9h1a7b6s45iswd77dg7w1"; depends=[]; }; rmweather = derive2 { name="rmweather"; version="0.2.4"; sha256="18ajzwm0jb6wklrxp8cmifym4wn22y2rw4llhjxrc98fkis3jgk3"; depends=[dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange tibble tidyr viridis]; }; rmytarget = derive2 { name="rmytarget"; version="2.4.0"; sha256="1csl5b76r706gzvzhqgg4pdznbdl4i3b0srazwa7xdfc6zbrzljp"; depends=[dplyr httr lubridate purrr stringr tidyr]; }; - rmzqc = derive2 { name="rmzqc"; version="0.1.0"; sha256="03a02d7a7jkvr72lgrbgmphsnlx65ym5gganm7y3lk43ap2zy55m"; depends=[jsonlite knitr ontologyIndex R6 R6P rmarkdown testthat]; }; + rmzqc = derive2 { name="rmzqc"; version="0.4.2"; sha256="0z1nxcyaqjz113xa4nwx9grkkp6k26dvwra9d01sjkwiag9nkj1f"; depends=[jsonlite jsonvalidate knitr ontologyIndex R6 R6P rmarkdown testthat]; }; rnassqs = derive2 { name="rnassqs"; version="0.6.1"; sha256="00daka4pgvmipqq3151jj35fsicpfc06mnim8mm5jx5cyqcvilf7"; depends=[httr jsonlite]; }; rnaturalearth = derive2 { name="rnaturalearth"; version="0.3.2"; sha256="031fbbrldpzp4qknpgrldl76dq2q3dcl83y3dmw33m90z2ibqy47"; depends=[httr jsonlite sf sp]; }; rnaturalearthdata = derive2 { name="rnaturalearthdata"; version="0.1.0"; sha256="1z32j5lz2lb8xgpkr73majw22k0b49iazj6jjc7j4w9k4zxxa102"; depends=[sp]; }; @@ -16003,8 +16209,8 @@ in with self; { rngWELL = derive2 { name="rngWELL"; version="0.10-9"; sha256="1jyanz789ylbz9a2agqv5c674zrfqn0k7s9d5dfia63dpq8cqscr"; depends=[]; }; rngtools = derive2 { name="rngtools"; version="1.5.2"; sha256="0kd7x214cqw7hzpmk1iqy1bn7j6x0ady0yz2hsdbclbq9k57d33z"; depends=[digest]; }; rnmamod = derive2 { name="rnmamod"; version="0.3.0"; sha256="1cb6f5s0m7cciwyy8pd16qf4615k2vh58lgx5mdp9mpybwnvwapx"; depends=[dplyr fdrtool gemtc ggfittext ggplot2 ggpubr ggrepel knitr MASS mcmcplots netmeta pcnetmeta R2jags reshape2 scales writexl]; }; - rnn = derive2 { name="rnn"; version="1.8.0"; sha256="1r8hwdc8i2rf4ma53n53hxcc637aizcqs6z6rjbhbvs56hgaxnz1"; depends=[attention sigmoid]; }; - rnoaa = derive2 { name="rnoaa"; version="1.3.8"; sha256="12mrvvq93535pk9g52h0sl5wdlw0wpqdchghi24fjdr62r44p5sp"; depends=[crul data_table dplyr geonames ggplot2 gridExtra hoardr isdparser jsonlite lubridate scales tibble tidyr tidyselect XML xml2]; }; + rnn = derive2 { name="rnn"; version="1.9.0"; sha256="12js613gmmcpniq5adbmb3anqsza67m0jxk69486jv3am2vyqi5p"; depends=[attention sigmoid]; }; + rnoaa = derive2 { name="rnoaa"; version="1.4.0"; sha256="15rhnvzzfdxc37j4yixp21hw5p9ijg7c0la4cyrxj57wnc1r71m1"; depends=[crul data_table dplyr geonames ggplot2 gridExtra hoardr isdparser jsonlite lubridate scales tibble tidyr tidyselect XML xml2]; }; rnpn = derive2 { name="rnpn"; version="1.2.5"; sha256="02ka6ibdm9sbx3cffdh1lvr8555iqq3w74cs60djivp56gsvy009"; depends=[curl data_table httr jsonlite magrittr plyr raster rgdal sp tibble XML]; }; rnr = derive2 { name="rnr"; version="0.2.1"; sha256="1z9bab3qmq8d79bcvjzldbxlah2w8mqp2ifd0cn1348dafwa0dhi"; depends=[assertthat purrr]; }; rnrfa = derive2 { name="rnrfa"; version="2.1.0"; sha256="1x0kqk060kjw84jlrbcp1z6agc5d96xy0ydfbgvh60cg9v1q8kpr"; depends=[curl ggmap ggplot2 httr jsonlite lubridate sf tibble zoo]; }; @@ -16012,6 +16218,7 @@ in with self; { roads = derive2 { name="roads"; version="1.1.0"; sha256="18m1r091rwj2k1ld4w9n9gla9x5lh2kx65cgvh7x43ky4rnsvzfj"; depends=[data_table dplyr igraph raster rlang sf sp terra tidyselect units]; }; roahd = derive2 { name="roahd"; version="1.4.3"; sha256="089klcgxry6b8z30h1ssy024lqxqm1bz6qs2kx95qjfl8xgwlwm0"; depends=[dplyr ggplot2 magrittr plotly robustbase scales]; }; robCompositions = derive2 { name="robCompositions"; version="2.3.1"; sha256="13m03r2mcs6srn3hk46lrjhyv5px9jyvqsqbxri1h79f31bji58b"; depends=[car cluster cvTools data_table e1071 fda fpc GGally ggfortify ggplot2 kernlab MASS mclust pls Rcpp RcppEigen reshape2 robustbase robustHD rrcov tidyr VIM zCompositions]; }; + robStepSplitReg = derive2 { name="robStepSplitReg"; version="1.0.0"; sha256="1106jgqfp19ks4d7c8l52k60fk4pf3rbmadi1baw06ly3xh4pl3w"; depends=[cellWise pense Rcpp RcppArmadillo]; }; robber = derive2 { name="robber"; version="0.2.3"; sha256="1yvhd9zxs3jfz72gqz6db3xj3xpvgch6n5gy6jvwppx3xjfwxg7j"; depends=[blockmodels ggplot2 GREMLINS igraph magrittr pammtools partitions purrr]; }; robcbi = derive2 { name="robcbi"; version="1.1-3"; sha256="0rj732qdd0wd9d9pxldnsw5rif5d7wz327iydvxcf5x8lgvk42jd"; depends=[robeth]; }; robcor = derive2 { name="robcor"; version="0.1-6.1"; sha256="0gmhklk8nayhfl2zfp7mhsawryyn950gdh5lgg3vq1nkl12sc8y7"; depends=[]; }; @@ -16032,7 +16239,7 @@ in with self; { robregcc = derive2 { name="robregcc"; version="1.1"; sha256="06fapmc3jfrfdqvz02jr12dk1d5iw6s3mcb13jz1nm2bybw6r04a"; depends=[magrittr MASS Rcpp RcppArmadillo]; }; robsel = derive2 { name="robsel"; version="0.1.0"; sha256="0vf9hry11hf6bi4pz18c6gh9janx0v6shm2m14kckscvh80z3k5b"; depends=[glasso Rcpp RcppEigen]; }; robservable = derive2 { name="robservable"; version="0.2.2"; sha256="159dl6w0lxh3n107l4ms3x7nbp4f0339xrvxsy7xk2sjrdaxxv5k"; depends=[htmlwidgets jsonlite]; }; - robslopes = derive2 { name="robslopes"; version="1.1.2"; sha256="06j9n4p6pmiydhrm24skj7qlv5ia9f5qwbs8jss5cvmbjad7lqgq"; depends=[Rcpp RcppArmadillo]; }; + robslopes = derive2 { name="robslopes"; version="1.1.3"; sha256="0hhdpp03ybf71x6wz766glqlq4ywc4v65mj0ca3idv69p488mvb5"; depends=[Rcpp RcppArmadillo]; }; robsurvey = derive2 { name="robsurvey"; version="0.5-2"; sha256="140n1liq9bniy782j85a7r5f492wiyl0qhf5shpks6fyipcjjx9r"; depends=[KernSmooth survey]; }; robumeta = derive2 { name="robumeta"; version="2.1"; sha256="1lybq36p1n1z9p0iqiyzwmv5f07q1wlkqfgrnx9kjf6pwlp9mkyk"; depends=[]; }; robusTest = derive2 { name="robusTest"; version="1.0.1"; sha256="0rgm0cl47c8ddhbl0da3jdrkxhgy3jqlabmi4fqkc80zcmaldmhi"; depends=[Rcpp]; }; @@ -16046,6 +16253,7 @@ in with self; { robustbase = derive2 { name="robustbase"; version="0.95-1"; sha256="1sm37gqs35cvkacigsla8kzvpzjzsrgkabf58ymk9pzcndnx4b46"; depends=[DEoptimR]; }; robustbetareg = derive2 { name="robustbetareg"; version="0.3.0"; sha256="09f4binbi5gcf80fhpxzrmpm2k2xf6f7rcw9g2xzmni8b4cs2l6p"; depends=[BBmisc betareg crayon Formula MASS Matrix miscTools numDeriv pracma Rmpfr robustbase rstudioapi zoo]; }; robustcov = derive2 { name="robustcov"; version="0.1"; sha256="1bgvf9h727aqfb11q976y2ybp3mpghkyd29waypyfp95csp3cf26"; depends=[caret glasso Rcpp RcppArmadillo]; }; + robustfa = derive2 { name="robustfa"; version="1.1-0"; sha256="0r7ydyjg0ch1wqngzdar2bd6jh0fvfzylmxmxq97kq1k6p3gb972"; depends=[rrcov]; }; robustlm = derive2 { name="robustlm"; version="0.1.0"; sha256="17l2kr9dc3z02b2jswfxal13md4xfpz4sqjfg6kyg6ilab1cfd06"; depends=[MASS matrixStats]; }; robustlmm = derive2 { name="robustlmm"; version="3.2-0"; sha256="0ya6lgfk58500mxs7668m93a0cypaf3bv4pmm633j2gf13fgznr1"; depends=[fastGHQuad lattice lme4 Matrix nlme Rcpp rlang robustbase xtable]; }; robustmeta = derive2 { name="robustmeta"; version="1.1-1"; sha256="0f7qj3c01wxhcx86hwjr2gik041vjvnzg444kyn72v7b7fr3nlyz"; depends=[metafor]; }; @@ -16065,7 +16273,7 @@ in with self; { rockchalk = derive2 { name="rockchalk"; version="1.8.157"; sha256="13g2rdnxazqfgy653d7vj6w79b2vgnd7bbz0sqn9k4qiig59jh41"; depends=[carData kutils lme4 MASS]; }; rocker = derive2 { name="rocker"; version="0.3.1"; sha256="15l6m8cmanw0av0c0wgn4m4ms6ablkj4hd0i9i9vq4003gafh9va"; depends=[DBI R6 sodium]; }; rockr = derive2 { name="rockr"; version="1.0.0"; sha256="190xaxcbb7miqw5mxyfqqlb2vzacifc8a7a3cqfdlpxra4d4jc25"; depends=[httr jsonlite mime progress]; }; - roclang = derive2 { name="roclang"; version="0.2.1"; sha256="0w7f17ppgc2mc3zd34lx445y7g7sxl5lscdbhyw650lvmk7kfsqd"; depends=[dplyr magrittr purrr rex rlang roxygen2 stringr tibble tidyr]; }; + roclang = derive2 { name="roclang"; version="0.2.2"; sha256="1irqscbj89mfkbq66kb7k1cx2ygilqwr6spxsm36rgqfbk1j5g6m"; depends=[dplyr magrittr purrr rex rlang roxygen2 stringr tibble tidyr]; }; rocnp = derive2 { name="rocnp"; version="0.1.0"; sha256="1xqlmihhgjn6g3kabgmdx1qn18sxqd43sq3nb39i8pbwvaxhjqjr"; depends=[dplyr glue magrittr purrr rlang stringr tibble]; }; rococo = derive2 { name="rococo"; version="1.1.7"; sha256="1fp3kk5j9kc0vyr50rlbsxjc9p3qz5137sifxsbd297p7zj1fcs2"; depends=[Rcpp]; }; rocsvm_path = derive2 { name="rocsvm.path"; version="0.1.0"; sha256="1pd59bzcz96sxpp725pqa7pjh2gdrfapbilp4wccjkf5290zw56v"; depends=[quadprog svmpath]; }; @@ -16082,7 +16290,7 @@ in with self; { rollmatch = derive2 { name="rollmatch"; version="2.0.2"; sha256="1bm1yc2z9byj4m9gz0il47y8drd3qzsb5lwb22a22axy306lqfqj"; depends=[dplyr magrittr]; }; roloc = derive2 { name="roloc"; version="0.1-1"; sha256="0xynj12gp010c23f6ll9p343vwgxwa22s771p1w2pi65cj2ixhas"; depends=[colorspace]; }; rolocISCCNBS = derive2 { name="rolocISCCNBS"; version="0.1"; sha256="100jh5m2c1zp5wg3wd4y2i47dzx1j0g6lfwyqmwk4bz99yzzz5am"; depends=[colorspace roloc]; }; - rolog = derive2 { name="rolog"; version="0.9.11"; sha256="14vldpnjfg4cgbzlnyar6vn2kmswryjwm4qqdy3dpn1alj1b0pkh"; depends=[Rcpp rswipl]; }; + rolog = derive2 { name="rolog"; version="0.9.13"; sha256="16vs2ig01422df4kig6gcc1hfrqb3jsrs8i4gq3niyjq6av31jrw"; depends=[Rcpp rswipl]; }; rolr = derive2 { name="rolr"; version="1.0.0"; sha256="04nm4q0mlr4w6jb0frykzlyknfn3gn02ysqr5ll5jch6wawichy2"; depends=[survival]; }; romic = derive2 { name="romic"; version="1.1.1"; sha256="0vqkizgk7dii5vdcmwmaj1i911xywqqj37qz34zi8phjg4hgy473"; depends=[checkmate dplyr ggplot2 glue purrr readr reshape2 rlang shiny stringr tibble tidyr]; }; rootSolve = derive2 { name="rootSolve"; version="1.8.2.3"; sha256="182bb727sgqi5f3pzmw8jnn328wdjrgj9lfvg49gv8s22rjd3cxm"; depends=[]; }; @@ -16106,18 +16314,21 @@ in with self; { rotasym = derive2 { name="rotasym"; version="1.1.4"; sha256="08xprp6jmf91lvg3y6wh9mdrxpv0vv9aqynlch842294fy0wzgl1"; depends=[Rcpp RcppArmadillo]; }; rotationForest = derive2 { name="rotationForest"; version="0.1.3"; sha256="1z2wk3mcs5hrahsxralidbc0dd8gxdbwjpr2f71g4g3isfx1ic8d"; depends=[rpart]; }; rotations = derive2 { name="rotations"; version="1.6.4"; sha256="19d7filrgwm25cklbpjr082cn0h991xa5lvrijjl59whan4axjkg"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo]; }; + rotatogram = derive2 { name="rotatogram"; version="0.1.3"; sha256="0y1kw8cjvdbdr9ghs7xb9wgj5g9h3nc0q36vxmz8jzjfh4lib68c"; depends=[ggplot2]; }; rotl = derive2 { name="rotl"; version="3.0.14"; sha256="1kszmn0fnjfay7d53wmpn31nayahkhkccmakbl8mcv0f5h0yfalq"; depends=[ape curl httr jsonlite rentrez rlang rncl]; }; rotor = derive2 { name="rotor"; version="0.3.7"; sha256="02mzcwd94hykysz3cv0q3dlhbbd4k3rm1di7dcw6m4masgzy05zb"; depends=[dint R6]; }; roughnet = derive2 { name="roughnet"; version="1.0.1"; sha256="1brl1zwmmczbismgvbq2m1i1n1v85m410z2ap6r7jqxpfn111kis"; depends=[graphlayouts htmlwidgets igraph jsonlite]; }; roughsf = derive2 { name="roughsf"; version="1.0.0"; sha256="0am4yd168pss53p8869akx4bnw95d3k30fbv17pml8y9iriq6zs5"; depends=[htmlwidgets jsonlite sf]; }; round = derive2 { name="round"; version="0.20-0"; sha256="1c403i57fwfh3pz6ksg5ws2fydq8zf2fk4x6r9d0xqn0fs7px7j4"; depends=[]; }; roundhouse = derive2 { name="roundhouse"; version="0.0.2"; sha256="0xx2wai9pdq0g7x8xmwlf48wxv4v18c7ymzvzxpvw1gggppmbk69"; depends=[]; }; + roundyh = derive2 { name="roundyh"; version="0.1.0"; sha256="06x97gnc06ib0qkygs8fznxx7pm52bpr778x1pypl8frmkj4sa0g"; depends=[]; }; routr = derive2 { name="routr"; version="0.4.1"; sha256="0sqllafwxqlkf8bl5nc3fpf17aqg5nbimrmc8l3z95y3gwhnqhkb"; depends=[assertthat digest R6 reqres stringi uuid]; }; roxut = derive2 { name="roxut"; version="0.4.0"; sha256="1ciflhmavl24wk4kjbilmm70q6z8i02m36x4pyh4m3czhnpyyv03"; depends=[roxygen2]; }; roxygen2 = derive2 { name="roxygen2"; version="7.2.3"; sha256="1nhn0jhnxzlyqx0qnpd7k7q3azzngyn0j4zs8awmlmyjfywzli6q"; depends=[brew cli commonmark cpp11 desc knitr pkgload purrr R6 rlang stringi stringr withr xml2]; }; roxygen2md = derive2 { name="roxygen2md"; version="1.0.0"; sha256="1gvrfy0sk5qi8d93zxj5f7xgnnw0w38zyxdik4ckf0pkk0zdm27a"; depends=[desc devtools enc rex rlang tibble usethis withr]; }; roxytest = derive2 { name="roxytest"; version="0.0.2"; sha256="17cxhdlywng6nky6c5m49yjs2pgrs1jqrzw6rj8kb6cp2zssclas"; depends=[roxygen2]; }; rpact = derive2 { name="rpact"; version="3.3.4"; sha256="080mr9ispvqs0886946wqxil7wylzvvaf72fcdpj1bn352jprrrx"; depends=[Rcpp rlang]; }; + rpaleoclim = derive2 { name="rpaleoclim"; version="1.0.0"; sha256="0dl6f77sdrzjhbmrdgbrpn2a9g9a0bcx9nc228r0mawxvd1h18kq"; depends=[curl fs rlang terra]; }; rpanel = derive2 { name="rpanel"; version="1.1-5.2"; sha256="0b9r458dx65p1s0az14s3bhyh5isqx5ax9dblpsxxm6i9jcnx8f9"; depends=[]; }; rpart = derive2 { name="rpart"; version="4.1.19"; sha256="0rcm4hk2k0ag9qmb0f933yqrq8jpnclwrzp6825swgsqnp83wwpy"; depends=[]; }; rpart_LAD = derive2 { name="rpart.LAD"; version="0.1.2"; sha256="1v1arv5b02n0jvyifb5km9w3z3wxg9x9g3g4xck4s319z5g6lp7n"; depends=[Rcpp rpart]; }; @@ -16132,11 +16343,12 @@ in with self; { rplotengine = derive2 { name="rplotengine"; version="1.0-9"; sha256="0bmxn578z1arjical1xhzy7ib32ys7p8wkmrjw1b66islwi4b79k"; depends=[xtable]; }; rpls = derive2 { name="rpls"; version="0.6.0"; sha256="0r3y63pi4d7hfzs53d9w23ymmk86gvm85v0dx7n1gicha5nn1mk8"; depends=[pcaPP robustbase]; }; rplum = derive2 { name="rplum"; version="0.3.0"; sha256="1rqyv367hy8b66dnqk0v9hd1bib0mbf1wvw7fskccs5l7ldbkyki"; depends=[rbacon rintcal]; }; + rpm = derive2 { name="rpm"; version="0.7-1"; sha256="0kr1hzhfx1kxrrszvvk6xwfy2vpp1vqn75xi3l70m275ay8kip6p"; depends=[abind coda doFuture doRNG dplyr foreach future ggplot2 MASS matrixStats nloptr Rcpp RcppArmadillo]; }; rpmodel = derive2 { name="rpmodel"; version="1.2.0"; sha256="131kzag51r1fpa63xzj77b9hh4b1723lc424ch8dhbrcdrnjh730"; depends=[]; }; rpms = derive2 { name="rpms"; version="0.5.1"; sha256="1y686da4ylv403gbfx43yaa2i2zdcgdv9p1zmlq05dvbkjkvlvw9"; depends=[Rcpp RcppArmadillo]; }; rpnf = derive2 { name="rpnf"; version="1.0.5"; sha256="07byg0ym4d2cr6fp74z379jhsaw4c0xrwf622dvhwa4frn4anl60"; depends=[]; }; rportfolio = derive2 { name="rportfolio"; version="0.0.3"; sha256="1pj08qz1qmdcyxp629lyfggbgzr36wrjir0fj6hpgf5zm588bqiy"; depends=[xts zoo]; }; - rpostgis = derive2 { name="rpostgis"; version="1.4.3"; sha256="04x5qdz0kznxnp9kygp0m2rjxyhqfz3mc81mcr4aw6cy5p4zp9aq"; depends=[DBI raster rgeos RPostgreSQL sp]; }; + rpostgis = derive2 { name="rpostgis"; version="1.4.4"; sha256="1x5s6wayvxmrg84j700kq8zvqsksxglwlfaanpipgqf2sjhr52vj"; depends=[DBI raster rgeos RPostgreSQL sp]; }; rpql = derive2 { name="rpql"; version="0.8"; sha256="0iljs08pjnk4b08mgryzn70rxva723bk1hi3wyizx05lls2n8ly7"; depends=[gamlss_dist lme4 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; rpredictit = derive2 { name="rpredictit"; version="0.1.0"; sha256="0azq75fhjadchc4pxgs4pccpvskc508zhggxxb7ab012nysap027"; depends=[dplyr DT dygraphs httr jsonlite magrittr quantmod shiny xts]; }; rprev = derive2 { name="rprev"; version="1.0.5"; sha256="0494z0049rxahs4ndjlclzfc65k304a1m01cdlhjg4rz1gc1vrr8"; depends=[data_table dplyr ggplot2 lazyeval lubridate magrittr survival tidyr]; }; @@ -16148,7 +16360,7 @@ in with self; { rptR = derive2 { name="rptR"; version="0.9.22"; sha256="0vvjc6qiq71d5wckl77z606q1fp43mgrfzp1bxcab96n5whb2r9k"; depends=[lme4 pbapply]; }; rpyANTs = derive2 { name="rpyANTs"; version="0.0.1"; sha256="1mvpkd44qgf8a1iw91g78xcac6x0j64165jqb7phqr8vbhyyw20i"; depends=[reticulate rpymat]; }; rpymat = derive2 { name="rpymat"; version="0.1.5"; sha256="1jm45gr9fiv29lkiflmx9pbmb6h6fm8b97nyjyxpax7hj9f1ywlh"; depends=[fastmap glue IRkernel jsonlite rappdirs reticulate rstudioapi]; }; - rqPen = derive2 { name="rqPen"; version="3.1.2"; sha256="05adnx7smsybn4i788yipyh1cyg0ysxph2cf6jxmi4p8di8liyii"; depends=[data_table hqreg hrqglas lifecycle plyr quantreg Rdpack]; }; + rqPen = derive2 { name="rqPen"; version="3.1.3"; sha256="09k6w0n8a804zanv6plfss7v39xc3ysxb1zag36vdhisr9j7izw8"; depends=[data_table hqreg hrqglas lifecycle plyr quantreg Rdpack]; }; rqdatatable = derive2 { name="rqdatatable"; version="1.3.1"; sha256="1ml83gw9m9945qws2pi0x3bzm1jn4rh8n7zwivbir685hfprbhvn"; depends=[data_table rquery wrapr]; }; rquery = derive2 { name="rquery"; version="1.4.9"; sha256="12m80vr2sxm2ivvd1a27jy6vh9xvk5z4irlkaxm1f0sxi462brra"; depends=[wrapr]; }; rr = derive2 { name="rr"; version="1.4.1"; sha256="0l5ndcpnd3ib83vwh5bs83nvjr4in3v2kbqq8q4y9x90nrxaz901"; depends=[arm coda magic MASS]; }; @@ -16158,7 +16370,7 @@ in with self; { rrandvec = derive2 { name="rrandvec"; version="1.0.0"; sha256="0n92wm95xjng2j93a055mliph2cmialmcpm9b45jf75zqdhzizp5"; depends=[checkmate Rcpp]; }; rrapply = derive2 { name="rrapply"; version="1.2.6"; sha256="05shia32hs6y739dfk35y671c8nrifhb415mn3sdg4v065j2k1jc"; depends=[]; }; rrat = derive2 { name="rrat"; version="1.0.0"; sha256="1j1jd32pgggn5cqv66l63sw5p4hblgpznf33wd0zdbfapwy8rx4r"; depends=[quantreg]; }; - rrcov = derive2 { name="rrcov"; version="1.7-2"; sha256="1bpc401515ig5i3rka7dhvxv4zr3f8zhl117pby5vrf9rc3ys08g"; depends=[lattice mvtnorm pcaPP robustbase]; }; + rrcov = derive2 { name="rrcov"; version="1.7-3"; sha256="0shcsfxgb37ggys9d4cyfjs1p2szj52lfkva746fqsx64cvkcfw5"; depends=[lattice mvtnorm pcaPP robustbase]; }; rrcov3way = derive2 { name="rrcov3way"; version="0.2-5"; sha256="0c6kagw676m263jcinz2yb8pmwzfjlba21wy0zwbj2jhjpwm8hnd"; depends=[nnls pracma robustbase rrcov ThreeWay]; }; rrcovHD = derive2 { name="rrcovHD"; version="0.2-7"; sha256="1srxgw5qcgpmxqfplvbrlryxvkx0mic5y7v5lxgfvqvlmcb3rm3f"; depends=[pcaPP pls Rcpp robustbase robustHD rrcov spls]; }; rrcovNA = derive2 { name="rrcovNA"; version="0.4-15"; sha256="0r60chxm7bpc6sis60rp8k8xchwfrfa3lrfaidvv22ipx2q0psp7"; depends=[cluster lattice norm robustbase rrcov]; }; @@ -16178,14 +16390,14 @@ in with self; { rrum = derive2 { name="rrum"; version="0.2.0"; sha256="0w0f2n14if2b8x7n6v8y8q2vghd8j7xm1xhpxnvy3z50flinwgm7"; depends=[Rcpp RcppArmadillo rgen simcdm]; }; rsae = derive2 { name="rsae"; version="0.2"; sha256="0gi7igaymsikxx73dw3ak9pg2vhlvcz5xlbxz8clfxy1d66g58hd"; depends=[]; }; rsample = derive2 { name="rsample"; version="1.1.1"; sha256="1fmqfk1yihmh7lkszsf7pvn6zf67lpgff46hv2lpnfbssa3axllh"; depends=[dplyr furrr generics glue pillar purrr rlang slider tibble tidyr tidyselect vctrs]; }; + rsatscan = derive2 { name="rsatscan"; version="1.0.4"; sha256="13mhay8ljiy9p5ihgfcbgnvwg4qjvs3sjd4w7z8y10j19pxqpvkn"; depends=[foreign]; }; rsbp = derive2 { name="rsbp"; version="0.1.0"; sha256="0aardngvj9apn8q5vhfpv67rf7d5iqb7xdq7rh8xmgr8341fvbgc"; depends=[dplyr lubridate magrittr purrr reshape2 tibble tidyr xml2]; }; rscala = derive2 { name="rscala"; version="3.2.21"; sha256="1607nsfyvksv5ylxc5ma2cz8z0njysfyvyw085fkjb28ybfg6zjg"; depends=[]; }; rscc = derive2 { name="rscc"; version="0.2.1"; sha256="10srbalj8i67z30amvf08zfa4hs6phvq17kfgys9ihwaknckcyx3"; depends=[crayon formatR highlight igraph tm]; }; - rscimark = derive2 { name="rscimark"; version="1.0"; sha256="1jsjz4d5bnxb90qqzz42m4nyvm8d8w8bs0m1r5g2n78zmckqb8vy"; depends=[checkmate]; }; rsconnect = derive2 { name="rsconnect"; version="0.8.29"; sha256="0hqww1nn7ap6jzy6jl936d1fxs3hqw09w6hr9pgww2zrmb99ja45"; depends=[curl digest jsonlite openssl packrat rstudioapi yaml]; }; rscontract = derive2 { name="rscontract"; version="0.1.2"; sha256="0gn0xcvg9nj6m97g4si6bgmgaj6hxpicz8yig7n84jnczh6w510x"; depends=[]; }; rscopus = derive2 { name="rscopus"; version="0.6.6"; sha256="0kl6rv0j2396b8izvy0lp1f588il6w3yhq6d4swv8x8z14rsgcpw"; depends=[dplyr glue httr jsonlite plyr tidyr]; }; - rscorecard = derive2 { name="rscorecard"; version="0.24.0"; sha256="097fkpzbri7nvqs931dkm3kbbkajmns6rpmyd6vqdds6yjj3mk2z"; depends=[dplyr httr jsonlite lazyeval magrittr purrr tidyr]; }; + rscorecard = derive2 { name="rscorecard"; version="0.26.0"; sha256="0l0xx5q93na2fbl1gb11mv4xd514jmkhz95w4054pdmrq6smdc97"; depends=[dplyr httr jsonlite lazyeval magrittr purrr tidyr]; }; rsdNE = derive2 { name="rsdNE"; version="1.1.0"; sha256="0xjnkg009m51zfwih1rpgwch8bs7vvri0x4skrikzx3nvlszcjh3"; depends=[]; }; rsdepth = derive2 { name="rsdepth"; version="0.1-22"; sha256="067mx424qvl9xskcd5r5i3dp92mwjcc8xpd9kd1y0yjbax0dkcg9"; depends=[]; }; rsdmx = derive2 { name="rsdmx"; version="0.6-2"; sha256="0l2n4niip9l79m1zvknlm7k203zgr7cdz7rc8qisc3w0gh2nsjch"; depends=[httr plyr R6 XML]; }; @@ -16210,16 +16422,16 @@ in with self; { rsparkling = derive2 { name="rsparkling"; version="0.2.19"; sha256="1rb43lslhlg8jpniirzch8gnl86x6d3shcfp9fpxm0qd3fqrlm6z"; depends=[h2o sparklyr]; }; rsparse = derive2 { name="rsparse"; version="0.5.1"; sha256="15kdllm2lh6xdlv4j0ljyj5pczhx26s9d8cac7953zbb0sd45chz"; depends=[data_table float lgr Matrix MatrixExtra Rcpp RcppArmadillo RhpcBLASctl]; }; rspiro = derive2 { name="rspiro"; version="0.2"; sha256="1gjil39ib9p86a7r3i03h01x2dsc9y283rnp65xvavrzmmgz87b4"; depends=[]; }; - rspm = derive2 { name="rspm"; version="0.3.1"; sha256="13x6wirk33qm3cld16sw4p6s5yn49jyy1yx71qpr4w61yxb8yy28"; depends=[]; }; + rspm = derive2 { name="rspm"; version="0.4.0"; sha256="0qjjl5k0lfzdwvqa4mjpqp2dkrg5r2gpmninyazaspsdqcydl394"; depends=[]; }; rsppfp = derive2 { name="rsppfp"; version="1.0.4"; sha256="123yv54i58xj4wx9n08qp50mm4l271fm1zhzimrxx22wn2bg8zy5"; depends=[doParallel dplyr foreach igraph stringr tidyr]; }; rsprite2 = derive2 { name="rsprite2"; version="0.2.0"; sha256="1w043qjb959m5646fzpickzq2jxd1qc6mn3k9l0g76vmhzlqr0dy"; depends=[checkmate Rdpack]; }; rsq = derive2 { name="rsq"; version="2.5"; sha256="1r628srxhhf7b51lnj4qrzgbqajkm0ls47a9rzjkvmfq4ax5i73f"; depends=[Deriv lme4 MASS Matrix nlme]; }; rsqliteadmin = derive2 { name="rsqliteadmin"; version="1.0.1"; sha256="1d9szm3nsr1q3hqrmapxdlymmgb3655n8v6x2vpcpahg54ajqrp5"; depends=[config data_table disk_frame DT fs golem magrittr RSQLite shiny shinyAce shinydashboard shinyFiles shinyjqui]; }; - rstac = derive2 { name="rstac"; version="0.9.2-2"; sha256="1zkv8mvsf608bzrici0w38j3s6cvcpl8d5mkl17y6wszvx316n0f"; depends=[crayon httr jsonlite lifecycle magrittr]; }; + rstac = derive2 { name="rstac"; version="0.9.2-3"; sha256="1xghgghragg50wk1j91d0lkb2kv73f495fabzlsbdf0vifdhsd8v"; depends=[crayon httr jsonlite lifecycle magrittr]; }; rstack = derive2 { name="rstack"; version="1.0.0"; sha256="19vbfmkd6ymadah1y1w5rn52f4hviddccyc6qj2cv5viqwbwws2z"; depends=[R6]; }; rstackdeque = derive2 { name="rstackdeque"; version="1.1.1"; sha256="0i1qqbfj0yrqbkad8bqc1qlxmyxpn7zycbnq83cdmfbilcmi87ql"; depends=[]; }; rstan = derive2 { name="rstan"; version="2.21.8"; sha256="0xah8wl4lg8zh5982m20ipc6cjck1dsfi8lz1jbkg4212p1yvm5j"; depends=[BH ggplot2 gridExtra inline loo pkgbuild Rcpp RcppEigen RcppParallel StanHeaders]; }; - rstanarm = derive2 { name="rstanarm"; version="2.21.3"; sha256="19rj396q84maxnd9d2xcd5rblg3310xn7sqbd6k18kwf3dvd7wp9"; depends=[bayesplot BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen RcppParallel rstan rstantools shinystan StanHeaders survival]; }; + rstanarm = derive2 { name="rstanarm"; version="2.21.4"; sha256="11diz486ak31zx5402kra3s6nd76cvnla8frfn0kc7dzwhiwcspc"; depends=[bayesplot BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen RcppParallel rstan rstantools shinystan StanHeaders survival]; }; rstanemax = derive2 { name="rstanemax"; version="0.1.4"; sha256="1hrrzr3xz0lr6d0pykrizfnb1f9g4hp9hjyaiqpcdzdqd53zxrcx"; depends=[BH dplyr ggplot2 magrittr purrr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tidyr]; }; rstantools = derive2 { name="rstantools"; version="2.3.1"; sha256="0xb9rb6nlqsqxi08hx9iwqpfz6ssdmh6axyk7d399j7zhklg5m42"; depends=[desc Rcpp RcppParallel]; }; rstatix = derive2 { name="rstatix"; version="0.7.2"; sha256="1891a976k2qjrh1vkzfg8icxblxa978wbazg7mqq8pcw3nmzbip0"; depends=[broom car corrplot dplyr generics magrittr purrr rlang tibble tidyr tidyselect]; }; @@ -16235,14 +16447,14 @@ in with self; { rsvd = derive2 { name="rsvd"; version="1.0.5"; sha256="07p2hjmpcwcsang8z9sjkpy94rydcin7m3hyvcgzgm5cd6w8c1p4"; depends=[Matrix]; }; rsvddpd = derive2 { name="rsvddpd"; version="1.0.0"; sha256="0p2cpv3ipkvl27zhncpcyxp6lqw54ncdnxyk659qc24l0fqbw7dc"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; rsvg = derive2 { name="rsvg"; version="2.4.0"; sha256="1schf5gfqzvwmaigdsic5va9bbk9ycvcisiyll8xjjw116y9cxyb"; depends=[]; }; - rswipl = derive2 { name="rswipl"; version="9.1.8"; sha256="0nkvirz05xkfwqd9l0b2cpaif88cpr051lqgam7w3b23j7ghndz3"; depends=[Rcpp]; }; + rswipl = derive2 { name="rswipl"; version="9.1.9"; sha256="00v4v8hfk7msj5fwkvxbmbc7fvf5948w4v0qkzrfnwn6466in9b4"; depends=[Rcpp]; }; rsyncrosim = derive2 { name="rsyncrosim"; version="1.4.2"; sha256="15l1g71zq18b2j6dxwdbrcw8x2nkjgijr3zp906xx8g76p6n1hi6"; depends=[DBI gtools lifecycle raster RSQLite]; }; rsyntax = derive2 { name="rsyntax"; version="0.1.4"; sha256="0bmi0qc535scdzrdr9sxnigby5ynw9dk95f99p55plc506z3pfya"; depends=[base64enc data_table digest igraph magrittr png rlang stringi tidyselect tokenbrowser]; }; - rsyslog = derive2 { name="rsyslog"; version="1.0.2"; sha256="0sc9jiscabr72fsx1wwjvq44casvhdsinj77wrcp017a4f9i0k5b"; depends=[]; }; + rsyslog = derive2 { name="rsyslog"; version="1.0.3"; sha256="1wslqvc8d49qz13vixfb8pqinb5p1k0w297wvflslhfkk5rx98x4"; depends=[]; }; rt = derive2 { name="rt"; version="1.1.0"; sha256="1wwx3pjwsqvar25cddc4090vcngir81a7n9yiv4q8i47h58xmc2g"; depends=[httr stringr]; }; rt_test = derive2 { name="rt.test"; version="1.18.7.9"; sha256="0ywkdjvfzmrmmsfkz4jbhwzbzv7wivx80xy8wr92dch1862h6ias"; depends=[]; }; rt3 = derive2 { name="rt3"; version="0.1.2"; sha256="1fqbymkz4csavkxrs26glzrh0kw3qy9x5smgddgda9a1dxh9ljkm"; depends=[]; }; - rtables = derive2 { name="rtables"; version="0.6.0"; sha256="1gsb7aff2ikqszjbbfxb58kh0n4agmdnaxx9is9k7755gdz1146n"; depends=[formatters htmltools magrittr]; }; + rtables = derive2 { name="rtables"; version="0.6.1"; sha256="1fnm5nnm79zn00fpkapbpc948a44yj2gy893gii2617rlgzca88v"; depends=[formatters htmltools magrittr]; }; rtape = derive2 { name="rtape"; version="2.2"; sha256="0q7rs7pc1k1kayr734lvh367j5qig2nnq5mgak1wbpimhl7z3wm7"; depends=[]; }; rtdists = derive2 { name="rtdists"; version="0.11-5"; sha256="1v8yhyvliw3dm3ciwxxaa9spfw05wp334l7gmvgv20mab2kjxkwp"; depends=[evd gsl msm Rcpp]; }; rtematres = derive2 { name="rtematres"; version="0.2"; sha256="1d0vrprvnlk4hl2dbc6px9xn9kx9d1qvlqxd798hzda6qg5wwvf2"; depends=[gdata plyr RCurl XML]; }; @@ -16250,12 +16462,12 @@ in with self; { rtern = derive2 { name="rtern"; version="0.1.2"; sha256="0i9493f3rykhjxwbvydz6aikzkwfphq3dyc8jw0fzw057zd24cgb"; depends=[rlang]; }; rtf = derive2 { name="rtf"; version="0.4-14.1"; sha256="032ff0yavqmd2d9svgwkmvxwh0cxjbac6pj48v4cshi898f02rhh"; depends=[R_methodsS3 R_oo]; }; rtgstat = derive2 { name="rtgstat"; version="0.3.2"; sha256="1alvs2gd0kp11vlnk6ql2hk6fm1mn5wdkm6p9c8amb1n6i3c097x"; depends=[cli dplyr httr2 purrr snakecase stringr tidyr]; }; - rticles = derive2 { name="rticles"; version="0.24"; sha256="05idvyfjfa4f244km4sxripg8gndvganx5s0ch00xbi4cqnlr2pq"; depends=[knitr rmarkdown tinytex xfun yaml]; }; + rticles = derive2 { name="rticles"; version="0.25"; sha256="17nggn3zrbi1nj8g8v0hq3sakjvl742vhljdnxw7h6cx3j7123xg"; depends=[knitr lifecycle rmarkdown tinytex xfun yaml]; }; rticulate = derive2 { name="rticulate"; version="1.7.3"; sha256="0h22ixngz4nw85s79ssanms9ysvx0kgp0srq2nvyfk4mm7g4hfi7"; depends=[dplyr ggplot2 glue magrittr mgcv purrr readr rlang tibble tidymv tidyr tidyselect]; }; rtiddlywiki = derive2 { name="rtiddlywiki"; version="0.1.0"; sha256="1nipbly7b6gn49rwy6mrbg1bnh437qyayxrnskixc0fifzln43xl"; depends=[bookdown httr jsonlite rmarkdown settings stringr]; }; rtide = derive2 { name="rtide"; version="0.0.9"; sha256="0gr0j52jy7y1w1s0s88rjv9l85yvavypagmi0qw2ix9ca2xadlzl"; depends=[abind chk dttr2 tibble]; }; rties = derive2 { name="rties"; version="5.0.0"; sha256="1mxgzrlf41hhawab2664az151fmmhm8ivnnimmzm538yliilc0b7"; depends=[DataCombine DescTools deSolve dplyr ggplot2 gridExtra interactions lattice lme4 MASS mclust nlme nnet plyr zoo]; }; - rtika = derive2 { name="rtika"; version="2.4.1"; sha256="0zs5cx7fdmfiigsvxwcrn7hzdyj1j9iwqnd1gpdwvr0skswjl0ba"; depends=[backports curl digest sys]; }; + rtika = derive2 { name="rtika"; version="2.7.0"; sha256="11m4czs6wiybdcck3b4s6nzm47zf029mdik7n013yihvxp4q6rbs"; depends=[backports curl digest sys]; }; rtip = derive2 { name="rtip"; version="1.1.1"; sha256="0lfny8nvgnf90xsmgmr32nzjbw8117m4vw7d0bc3xm4pzpnymjdq"; depends=[boot ggplot2 mvtnorm plyr rootSolve]; }; rtist = derive2 { name="rtist"; version="1.0.0"; sha256="0p4jlz0z0nbvmixdrym6nqagz2i28zbsijcj785rd6wiy72d2hg5"; depends=[]; }; rtk = derive2 { name="rtk"; version="0.2.6.1"; sha256="1xafmp5y5p8fnsh16wj8n08x69v2hawnsvsy7g4dcz1i5xkhyc0m"; depends=[Rcpp]; }; @@ -16271,7 +16483,7 @@ in with self; { rtrim = derive2 { name="rtrim"; version="2.1.1"; sha256="1l2ijkm4p3nd7n4q1b4y9pdyafgyf76zizpi7hhzw1rr9zkxhff2"; depends=[]; }; rtry = derive2 { name="rtry"; version="1.0.0"; sha256="1sac82z2jk5cp7cr3m6l07b6rk0ims0bsm3pvmk870v014brkim4"; depends=[curl data_table dplyr jsonlite tidyr]; }; rts = derive2 { name="rts"; version="1.1-8"; sha256="17ghnpbmnjk7gmnir1897w8ib1dmyw59f23nj85g7k0pji3p8psb"; depends=[raster RCurl sp terra xts zoo]; }; - rts2 = derive2 { name="rts2"; version="0.4"; sha256="1f5w7lpaqi02qw8k56lfmb2b9vhznfwdjwf5kpm40wgkpl81wkf8"; depends=[BH lubridate R6 Rcpp RcppEigen RcppParallel rstan rstantools sf StanHeaders]; }; + rts2 = derive2 { name="rts2"; version="0.5"; sha256="0iv2mn4w3agqd921sf44rq6plwcrb4sxazyf455nysdmjbcbsc86"; depends=[BH lubridate R6 Rcpp RcppEigen RcppParallel rstan rstantools sf StanHeaders]; }; rtsdata = derive2 { name="rtsdata"; version="0.1.3"; sha256="0ylw8m0wf6jvjl3zirns6qk71lwsrljnvz5dn1ngvp7c1x7y1wn9"; depends=[anytime brotli curl data_table mongolite Quandl quantmod xts zoo]; }; rtson = derive2 { name="rtson"; version="1.3"; sha256="1gwvk7nmq9bz90jy1zh7lhr735iw804pmwxykdpaigcsnxk7zx03"; depends=[R6]; }; rtsplot = derive2 { name="rtsplot"; version="0.1.4"; sha256="1zgndf2g39zp67b0ibcy9ib33r0mb7pwmqpy92gb31a0hvckzdj7"; depends=[quantmod RColorBrewer xts zoo]; }; @@ -16304,13 +16516,14 @@ in with self; { ruv = derive2 { name="ruv"; version="0.9.7.1"; sha256="1n4q9mrp9f644spbns6bbnzmlabrg90hwkdfg3hnm3rxp9b4xid0"; depends=[ggplot2 gridExtra scales]; }; rv = derive2 { name="rv"; version="2.3.5"; sha256="1rjbhlvd7cxn7yw001p859zl5ibxl4di03j1aadm4zycq1zyr6q7"; depends=[]; }; rvHPDT = derive2 { name="rvHPDT"; version="4.0"; sha256="0a6mzb714cvgwgam7429wzv0r28yl2aqhfsx7wjpw265ys8qyw1h"; depends=[gtools]; }; + rvMF = derive2 { name="rvMF"; version="0.0.7"; sha256="0h0d710sfxmf0gk4k5nmx5m4b04zkazrzf7c8kh3pcmc2xp3ml82"; depends=[Bessel Rcpp Rfast scModels]; }; rvalues = derive2 { name="rvalues"; version="0.7.1"; sha256="0vgizlm5g6mnzvwsprgg0wj0k2y3nc8zn1bqdaw58py92mqpvj1d"; depends=[]; }; rvcheck = derive2 { name="rvcheck"; version="0.2.1"; sha256="09khjklvzbafd7r55496by01a9g3y291d87hpy43w44dmz9fzn9a"; depends=[BiocManager yulab_utils]; }; rversions = derive2 { name="rversions"; version="2.1.2"; sha256="0q5ip3rkhcxz7472fbqddrw3a2wm31b18w7ax0pi6wc27qiihn6y"; depends=[curl xml2]; }; rvertnet = derive2 { name="rvertnet"; version="0.8.2"; sha256="09lja7dd1rdln7cpd4rn4l3fynm223as3k295dcwf4x26gna7s9d"; depends=[crul dplyr ggplot2 jsonlite maps tibble]; }; rvest = derive2 { name="rvest"; version="1.0.3"; sha256="07hws9infwchy19smrcd9m6c0jii0bdn335yxqk3ramgj5ryyrd4"; depends=[cli glue httr lifecycle magrittr rlang selectr tibble withr xml2]; }; - rvg = derive2 { name="rvg"; version="0.3.2"; sha256="0va4d2rhrrwlqjbz85pshar7m3gvvls5i3j0cpxvrm6590mpck3r"; depends=[gdtools officer Rcpp rlang xml2]; }; - rviewgraph = derive2 { name="rviewgraph"; version="1.4.1"; sha256="0j6g9qwxf4bzv9lr7fkgmk60cqid8kmck1x9kjf8il89qahbvsfs"; depends=[rJava]; }; + rvg = derive2 { name="rvg"; version="0.3.3"; sha256="0m9xfii35rv5dkk1n675s2schnxy90344ccbk1998g1qw9x1bj0m"; depends=[gdtools officer Rcpp rlang xml2]; }; + rviewgraph = derive2 { name="rviewgraph"; version="1.4.2"; sha256="161fdvk1gn5mz15shkd2w0yv0y9bp5rzyrmg43yl7h75csfl7l8g"; depends=[rJava]; }; rvif = derive2 { name="rvif"; version="1.0"; sha256="0aqzh8n889avbjdf4244h4a5y5a6w9hxxgm15ygxvysrw5rjb37f"; depends=[multiColl]; }; rvinecopulib = derive2 { name="rvinecopulib"; version="0.6.3.1.1"; sha256="0cmzijh03mbl3b3x8gin3vzgc52yrxmai45dxw5a6zrfal3x15fz"; depends=[assertthat BH kde1d lattice Rcpp RcppEigen RcppThread wdm]; }; rvkstat = derive2 { name="rvkstat"; version="3.2.0"; sha256="0nk6bx04jnm55k5323w1n4zg7qgds6c53fvdz329kqfsrmpj4wgq"; depends=[dplyr httr jsonlite lgr stringr tidyr]; }; @@ -16320,7 +16533,6 @@ in with self; { rwarrior = derive2 { name="rwarrior"; version="0.4.1"; sha256="1s92qy57n92qwlf51hr6v5k2gip5f9jz9q4kpgb3vjql6nykrp4v"; depends=[checkmate cli dplyr glue R6 stringr tibble]; }; rwavelet = derive2 { name="rwavelet"; version="0.4.1"; sha256="092c1h1xyyi2fwg99dgbn1b22cgf8mliizjpc2z7dnravznprr94"; depends=[signal]; }; rwc = derive2 { name="rwc"; version="1.11"; sha256="1qhgkbkp4nz0wq5c4x8232xiszpiyzcdklfgvpnx4cbp3bbfdi4g"; depends=[MASS Matrix mvtnorm raster]; }; - rwebstat = derive2 { name="rwebstat"; version="1.1.0"; sha256="106dkhlr33ii17q45c1hrmbslwsj1qlmx325skch2q71mv7ii0lj"; depends=[dplyr getPass htmltools httr jsonlite readr stringr]; }; rwfec = derive2 { name="rwfec"; version="0.2"; sha256="0wmalfms59zi8jdn2s2qbcdckfkifl9vg19hzx4389mm5gk6qsbh"; depends=[Rcpp]; }; rwhatsapp = derive2 { name="rwhatsapp"; version="0.2.4"; sha256="004d0cigay7bz754lrxjdwp1xsclc23wh03dlzyby900xcdizxk7"; depends=[stringi tibble]; }; rwicc = derive2 { name="rwicc"; version="0.1.3"; sha256="14jyc0qq6rxrmwvwdm59axib72q347s6ra8j1h97p75ah59kxndr"; depends=[arm biglm dplyr ggplot2 lubridate magrittr pryr scales]; }; @@ -16331,7 +16543,7 @@ in with self; { rwty = derive2 { name="rwty"; version="1.0.2"; sha256="0p0bpq5dk8vjqx8ry364xhaq3rgxa49planapggicg7by2mhaacc"; depends=[ape coda GGally ggdendro ggplot2 phangorn plyr reshape2 viridis]; }; rwunderground = derive2 { name="rwunderground"; version="0.1.8"; sha256="02p26gkicd5v511kb04p1h3wxj57r7j5vr97n3ibywc6ivz7nqxa"; depends=[countrycode dplyr httr lubridate tibble]; }; rxSeq = derive2 { name="rxSeq"; version="0.99.3"; sha256="0g0n2pzbssz61psghjp1vrlspgph4s39x1k1zhcz7ivdn5pjb2nx"; depends=[MASS numDeriv VGAM]; }; - rxode2 = derive2 { name="rxode2"; version="2.0.12"; sha256="1ngxnsj1aszm03zncbf8qnifvmria96cx29781hvqd15l0d0hvqy"; depends=[backports BH checkmate cli data_table ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo rex rxode2et rxode2ll rxode2parse rxode2random sys]; }; + rxode2 = derive2 { name="rxode2"; version="2.0.13"; sha256="0xrmbns7ly1ppliyr1yxp67fwdzshl5sw4kicrxfch2k2n9dnfb0"; depends=[backports BH checkmate cli data_table ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo rex rxode2et rxode2ll rxode2parse rxode2random sys]; }; rxode2et = derive2 { name="rxode2et"; version="2.0.10"; sha256="1lzjl7x190zcn9ga6p4q7kfwanhmipjms433pa8zma9r6538ni92"; depends=[checkmate cli crayon lotri magrittr Rcpp rxode2parse rxode2random]; }; rxode2ll = derive2 { name="rxode2ll"; version="2.0.11"; sha256="0fj5lbs67g1adjywfnav88rsj0sy3lwwf4gyimdh89rbm1glrrs3"; depends=[BH checkmate Rcpp RcppEigen RcppParallel StanHeaders]; }; rxode2parse = derive2 { name="rxode2parse"; version="2.0.16"; sha256="0y0hghvvik7cnh828mrp4mbnffylby3d1g1hrbhszac061n8lbvj"; depends=[BH checkmate crayon data_table digest dparser knitr qs Rcpp RcppEigen rex StanHeaders]; }; @@ -16339,16 +16551,14 @@ in with self; { rxylib = derive2 { name="rxylib"; version="0.2.11"; sha256="1g5vrw6hb7i19vdg6gl62hn6mn37b5vl6jjr0nsry2880sxybjvq"; depends=[BH Rcpp]; }; ryandexdirect = derive2 { name="ryandexdirect"; version="3.6.2"; sha256="03k4z32wgc2rkmz4lj89s3w7w9ywwbdbkqm2nfapl5q45pz6wwzz"; depends=[bitops data_table dplyr httr jsonlite magrittr purrr readr stringr tidyr xml2]; }; rym = derive2 { name="rym"; version="1.0.6"; sha256="135h9lmyrpnkc4q5kdcpbr96glc0a9bah01sm4qakzdcb6zsxsh1"; depends=[httr purrr stringr]; }; - ryouready = derive2 { name="ryouready"; version="0.4"; sha256="1d9z3paxcrkwsgn5g83x57jwz2iqarks30x0bwg48i5ispw6xbr3"; depends=[car ggplot2 stringr]; }; rytstat = derive2 { name="rytstat"; version="0.3.0"; sha256="1shsc54ss9120ngl59pnd6kqclfh2ilva97xdsx58a9c2kry2dmm"; depends=[cli dplyr gargle httr pbapply rlang snakecase stringr tidyr withr]; }; rzentra = derive2 { name="rzentra"; version="0.1.0"; sha256="1knp1616ck64wgf3r80s1nywdnljc1r9fjvgg531j0fxir04aqkl"; depends=[data_table dplyr httr jsonlite lubridate magrittr purrr]; }; - rzmq = derive2 { name="rzmq"; version="0.9.8"; sha256="0lqwxi9ckydvrmmkwy3mhqd28gyajijznbbb4j23mnmi0aspwnl1"; depends=[]; }; - s2 = derive2 { name="s2"; version="1.1.2"; sha256="0mqb7jvjpbix9fq5ivcg630m5s5z2pyx8dmyiyvsajkg3i9kgclg"; depends=[Rcpp wk]; }; - s20x = derive2 { name="s20x"; version="3.1-37"; sha256="05rnlvv988k3h06szwxhyjn2v0ic10v4v8pjaifqn4sf1f5dmpni"; depends=[]; }; - s2dv = derive2 { name="s2dv"; version="1.4.0"; sha256="1xx7rjrc3fjjzc4mmpfbmddlmrjdlizsb4dvqxl314mjp84bls79"; depends=[abind bigmemory ClimProjDiags easyNCDF easyVerification mapproj maps multiApply NbClust ncdf4 plyr SpecsVerification]; }; + rzmq = derive2 { name="rzmq"; version="0.9.9"; sha256="1d05jw6ljk5qyv28f0ggvw8nd6hawsgmnk0i9dh902lkkzv158jm"; depends=[]; }; + s2 = derive2 { name="s2"; version="1.1.4"; sha256="0k209rx7w47rqgydy8h7ldngxm0b8d8yidhwbgw2rrddx8jlj2xy"; depends=[Rcpp wk]; }; + s20x = derive2 { name="s20x"; version="3.1-38"; sha256="1vbc0d4g7wkw551fr8jkgq76ilk83d6nj0sxlkj903h6lg8kbjwg"; depends=[]; }; s2dverification = derive2 { name="s2dverification"; version="2.10.3"; sha256="10zqw7w8hm7cqbaxy6asflw0i8s5rmki2xhv3d51sm67vb7qn6f4"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; }; s2net = derive2 { name="s2net"; version="1.0.4"; sha256="0wq3y96m2h85kw755rnmnzvxknk5s7ii0g7p0zd8ahcnppkdk6kl"; depends=[MASS Rcpp RcppArmadillo]; }; - s3_resourcer = derive2 { name="s3.resourcer"; version="1.1.0"; sha256="181n2zgb5jzvn9hc3r88pla7fgi2xyzzrhw7qh7r4k8gk1n4wabb"; depends=[aws_s3 httr R6 resourcer sparklyr]; }; + s3_resourcer = derive2 { name="s3.resourcer"; version="1.1.1"; sha256="0njl93c1pxsg04fr74pnrpvx3z5m8nk2xv700l0jhbygshw8k5z2"; depends=[aws_s3 httr R6 resourcer sparklyr]; }; s3fs = derive2 { name="s3fs"; version="0.1.3"; sha256="0ahadn252mnh3wvi510lrzglh20mln4dz50yszm4p221mb4b3kff"; depends=[curl data_table fs future future_apply lgr paws_storage R6]; }; s4vd = derive2 { name="s4vd"; version="1.1-1"; sha256="1rp3z42nxmrvb942h3c5cl544lngzx7nrnnr4zjw7dq495bym7yp"; depends=[biclust foreach irlba]; }; sAIC = derive2 { name="sAIC"; version="1.0.1"; sha256="1gqcnwg7cnknfp36wqay9hibawx6n8z9z5z46vr05bl91m3xxqgs"; depends=[]; }; @@ -16369,7 +16579,7 @@ in with self; { saasCNV = derive2 { name="saasCNV"; version="0.3.4"; sha256="12h5vrl55sb4wmx0hzib5iax8p0q2qzk19h15r0asfkh9l7qz94l"; depends=[DNAcopy RANN]; }; sabre = derive2 { name="sabre"; version="0.4.3"; sha256="0vcfcsfc53022rglqxgf5p9b8d8lphyy161jmvlvb77qp959nbrh"; depends=[dplyr entropy raster rlang sf tibble tidyr]; }; sac = derive2 { name="sac"; version="1.0.2"; sha256="1yg133zm0db2lv0m62ij7c27bs4k3kbjic15dwrak534lk885sj2"; depends=[]; }; - saccadr = derive2 { name="saccadr"; version="0.1.1"; sha256="0qi67fhb5zpccnhxqqm8b0c498jd4zvsq705gciad9gm7ghc7jnz"; depends=[cluster dplyr magrittr Rcpp rlang signal tidyr]; }; + saccadr = derive2 { name="saccadr"; version="0.1.2"; sha256="1g8mdfykrqa0wg3aprazm3b05j4a7j4sqm1i04881dpyf5s42mlf"; depends=[cluster dplyr magrittr Rcpp rlang signal tidyr]; }; sad = derive2 { name="sad"; version="0.1.3"; sha256="0wr4xdx68hrxaw5izy36gm10smk6s1gzrzwayhfp4lhvkn75qsww"; depends=[dualtrees emdist]; }; sadists = derive2 { name="sadists"; version="0.2.4"; sha256="00iqgwqfia4mybg4v66kb368gydr103zmr8ka9y4j8rmwkg5j9kq"; depends=[hypergeo orthopolynom PDQutils]; }; sads = derive2 { name="sads"; version="0.4.2"; sha256="1j6vdjvpnbqp4kwbvhcl8p51ln29mmk9n150718wsqlifb8d1lw9"; depends=[bbmle GUILDS MASS poilog VGAM]; }; @@ -16396,7 +16606,7 @@ in with self; { saeeb = derive2 { name="saeeb"; version="0.1.0"; sha256="04vjxmnqcgqcamgjd9qq1dbx0msm40mnn94jjy9pzvsj2gsbws39"; depends=[COUNT MASS]; }; saekernel = derive2 { name="saekernel"; version="0.1.1"; sha256="0zk124kkxrwr3bliy01d3ag4r0flnjg4z3lmm5wmq3w0r4gwgy4f"; depends=[]; }; saemix = derive2 { name="saemix"; version="3.1"; sha256="1mnzc2pnnrnx2g3qszsnjdl56ah8grmfjdxpdaa41lk5l1hxns2b"; depends=[ggplot2 gridExtra npde rlang]; }; - safedata = derive2 { name="safedata"; version="1.1.2"; sha256="0fcrx4qd52q5kwsbhnmy1n777fgbyrnl8s0xgsrfv99ws3qknnli"; depends=[chron curl httr igraph jsonlite readxl sf]; }; + safedata = derive2 { name="safedata"; version="1.1.3"; sha256="127ciirz3sjq2qfnx5zrh2nwglign55if9gwplvr579m0jjysjf5"; depends=[chron curl httr igraph jsonlite readxl sf]; }; safejoin = derive2 { name="safejoin"; version="0.1.0"; sha256="0qvra505g7cay3nhq6yqrddb7sw3kx50y8jhgvxi47rxdc3alzba"; depends=[dplyr glue]; }; safer = derive2 { name="safer"; version="0.2.1"; sha256="1lmhaj9y0hi4ybxfkllxl99vsagcg73sy4kkcmlvn3bs69jky1r9"; depends=[assertthat base64enc sodium]; }; safestats = derive2 { name="safestats"; version="0.8.7"; sha256="1jxdnvmf6w8hgd5wcfjcmm796nchig1xizhngbzdgl85yi6nw1yy"; depends=[BiasedUrn boot dplyr hypergeo purrr rlang survival]; }; @@ -16408,9 +16618,9 @@ in with self; { salesforcer = derive2 { name="salesforcer"; version="1.0.1"; sha256="19z4q5k0k1c1s2piqjg0z6nrwabap016nbx3jpf51lvmh5lp8ycf"; depends=[anytime base64enc curl data_table dplyr httr jsonlite lifecycle lubridate mime purrr readr rlang rlist tibble vctrs XML xml2 zip]; }; salso = derive2 { name="salso"; version="0.3.29"; sha256="1p35ga847k7jlw41zba7kvhmcb55m82xrc935qbd6zghxhxvy9d5"; depends=[]; }; salty = derive2 { name="salty"; version="0.1.0"; sha256="1dxq62yrkv416fy09l03slc7ci6mnwiyvjlsxhbqnj8yjy3kbhr6"; depends=[assertthat purrr stringr]; }; + samadb = derive2 { name="samadb"; version="0.2.6"; sha256="1jmk94zf42msgpm3i6d1b1njnpxax3hnbs8w957f6frk97idwp27"; depends=[collapse data_table DBI RMySQL writexl]; }; sambia = derive2 { name="sambia"; version="0.1.0"; sha256="15yz5lrjav5bs8m52crg3l43xmi4gf7wydji76p181ssyg43z2ln"; depends=[dplyr e1071 FNN mvtnorm pROC ranger smotefamily]; }; - samc = derive2 { name="samc"; version="3.0.2"; sha256="1wajvwb94132558sl7k8jdmm3xgr8p31l00iid10aizyj3kf5cra"; depends=[Matrix raster Rcpp RcppEigen RcppThread terra]; }; - samon = derive2 { name="samon"; version="4.0.1"; sha256="1zhnv7kdpd2zhp6il5x56v4yh5703n1nsnkrysygns4i7xhvcf6z"; depends=[]; }; + samc = derive2 { name="samc"; version="3.2.1"; sha256="0i5k27699p28xzfbdk41ni45l5lp1k2zla5mf15x3livmnn8c3d4"; depends=[circular Matrix raster Rcpp RcppEigen RcppThread terra]; }; sampleSelection = derive2 { name="sampleSelection"; version="1.2-12"; sha256="1am1w8c24f27gcdmrk3b4wp9j5awghnw9s9lphnkm10pl31881dy"; depends=[Formula maxLik miscTools mvtnorm systemfit VGAM]; }; sampleVADIR = derive2 { name="sampleVADIR"; version="1.0.0"; sha256="1fxqjbczw5wpdx19rmlc2jwsk8nlkbbpdagn9z1xkfba3xli9f1w"; depends=[lubridate splitstackshape]; }; sampler = derive2 { name="sampler"; version="0.2.4"; sha256="12jjx3ci1yss8dj64bjdmz73cyjfkwb7b9zk4zm48lqv78k6wlv7"; depends=[dplyr purrr reshape tidyr]; }; @@ -16421,7 +16631,7 @@ in with self; { sampling = derive2 { name="sampling"; version="2.9"; sha256="11xis4vzn2ga8ml9xrgfgqzccvwbnabq35aidzdvpnvciybsanvz"; depends=[lpSolve MASS]; }; samplingDataCRT = derive2 { name="samplingDataCRT"; version="1.0"; sha256="0ah3fi2sn642c8nicikhjhl1hdsjzshrf1j02swq0jaqggcqjdvk"; depends=[mvtnorm]; }; samplingEstimates = derive2 { name="samplingEstimates"; version="0.1-3"; sha256="1srdchlpxksfdqhf5qdvl7nz0qsxkxww7hzqj0q71asbzlq3am3p"; depends=[samplingVarEst]; }; - samplingR = derive2 { name="samplingR"; version="0.1.2"; sha256="0myxp8rh8rgmashrkqiazjfis9y8y7zadghvfviwfflcyd3vl43l"; depends=[]; }; + samplingR = derive2 { name="samplingR"; version="0.1.4"; sha256="0n5iq8bbb87k4dn5p94afcp55hz5lk0myf09xhnsl0y0w4k3gr6k"; depends=[dplyr]; }; samplingVarEst = derive2 { name="samplingVarEst"; version="1.5"; sha256="0h78dzb18cknmg6bnjfxaqfdayyghq6skxca1dj1idqh9p4igaqq"; depends=[]; }; samplingbook = derive2 { name="samplingbook"; version="1.2.4"; sha256="08fhzanzb725hlagm0225121gdgipkbfkixizwykggaimkz5j1ad"; depends=[pps sampling survey]; }; sampsizeval = derive2 { name="sampsizeval"; version="1.0.0.0"; sha256="06mghabwqcc92hdvirm1gcna24hwll2gvm105ljkf5hgn0fa5xii"; depends=[dplyr plyr pracma sn]; }; @@ -16431,7 +16641,7 @@ in with self; { sand = derive2 { name="sand"; version="2.0.0"; sha256="0a8skj1wi1n9zlm7jb5cix1i4ssdzfpj4ym2854ala9jy6qj7g7n"; depends=[igraph igraphdata]; }; sandbox = derive2 { name="sandbox"; version="0.2.1"; sha256="0k86dgfjg7ib79cl6nwxv1g9i15pk501kd8ynlaj3mijpnhgvbal"; depends=[RLumModel]; }; sandwich = derive2 { name="sandwich"; version="3.0-2"; sha256="1d72vwxidsyac9mbyxrm06qds63rzcr82nn4c05466gbajsvcc3f"; depends=[zoo]; }; - sandwichr = derive2 { name="sandwichr"; version="1.0.3"; sha256="0blwfdn9jsfyripir8vw910k9vrhx8bqgh2xvaarxy66r33ynq31"; depends=[caret dplyr geodetector ggplot2 gridExtra lwgeom sf]; }; + sandwichr = derive2 { name="sandwichr"; version="1.0.4"; sha256="1g5jg8x4a9qdvcrsali2z1zrbrh628nsings1v02gpvfw2qbdb45"; depends=[caret dplyr geodetector ggplot2 gridExtra lwgeom sf]; }; sanic = derive2 { name="sanic"; version="0.0.1"; sha256="05fd7jpi7cf9klfh6dqf8wklrjh5q1b3xqddxhdihcsqvcqhg48l"; depends=[Matrix Rcpp RcppEigen]; }; sanitizers = derive2 { name="sanitizers"; version="0.1.0"; sha256="1c1831fnv1nzpq8nw9krgf9fm8v54w0gvcn4443b6jghnnbhn2n6"; depends=[]; }; sanityTracker = derive2 { name="sanityTracker"; version="0.1.0"; sha256="0y041x840sg5c05ksljb1y4xag1cib19q5ygp443k13ryfbcgs9k"; depends=[checkmate data_table]; }; @@ -16453,11 +16663,12 @@ in with self; { sarp_snowprofile_pyface = derive2 { name="sarp.snowprofile.pyface"; version="0.1.3"; sha256="0nnl4bdvvbn6wf3zhv7n710y8fn07rnsb2f9j9lkr5g9a52356bf"; depends=[data_table reticulate sarp_snowprofile]; }; sars = derive2 { name="sars"; version="1.3.6"; sha256="198dz3gbzm7iqa2p813anifzpjkna3blf4yzyy73j43h8w4k5v0b"; depends=[AICcmodavg cli crayon doParallel foreach nortest numDeriv]; }; sarsop = derive2 { name="sarsop"; version="0.6.14"; sha256="0y315gg3masbpvsf9zk0abj0mh0834h1yhmjg1fwwbqvygg64cjp"; depends=[BH digest Matrix processx xml2]; }; - sas7bdat = derive2 { name="sas7bdat"; version="0.6"; sha256="13ybq0r5bza6pcih9876pmccggn5bm7mzmn071qs46sbbpq40kyk"; depends=[]; }; - sasLM = derive2 { name="sasLM"; version="0.9.7"; sha256="1m3124sf5kjwz6m70gby3hk0y4m83y48zz9pwcprbw6jaxi6klrl"; depends=[mvtnorm]; }; + sas7bdat = derive2 { name="sas7bdat"; version="0.7"; sha256="0pwmngwmkybz64sqby86vzxq5wwfkh5hxnqncdv0fmp6w6x7jhjn"; depends=[]; }; + sasLM = derive2 { name="sasLM"; version="0.9.8"; sha256="09bllv4v44bq63kkvygcqhqshp867jk4bc84c1dzbhy64pyk4ja0"; depends=[mvtnorm]; }; sasMap = derive2 { name="sasMap"; version="1.0.0"; sha256="11vhhxhakqm1gsb3p4s4966sapmrqfyw79zfppbx5lnqi3xr0ngn"; depends=[readr stringi stringr]; }; sasfunclust = derive2 { name="sasfunclust"; version="1.0.0"; sha256="1ba7g3rxyq5h806na6bsdvh6mw6hydgcf3740qkfd4d5fx7m0mq4"; depends=[fda MASS Matrix matrixcalc mclust Rcpp RcppArmadillo]; }; - sass = derive2 { name="sass"; version="0.4.5"; sha256="143s030qicvsacwwrirhqkg3l3d285myqq8bij611nyjhbcn38gb"; depends=[fs htmltools R6 rappdirs rlang]; }; + sasr = derive2 { name="sasr"; version="0.1.2"; sha256="1cpmfclxphk5s3nr1znricm195j9xix5pw8jkyq3hhg0h7xirzi7"; depends=[checkmate reticulate]; }; + sass = derive2 { name="sass"; version="0.4.6"; sha256="06f0279ljg6mbcimmfx4rp18zxb9yc24sdp2yxwfxzdp17kjrs1f"; depends=[fs htmltools R6 rappdirs rlang]; }; sassy = derive2 { name="sassy"; version="1.1.0"; sha256="0iimj7wncdsx6h0fk4cg79dqbhyrlg76bl8jkz8rl2ac6ywdyz2p"; depends=[common fmtr libr logr reporter]; }; satdad = derive2 { name="satdad"; version="1.1"; sha256="1ig7z0z4filq57sk9rc38pnx79j1lxm1sacl9hbi407y0pqx01k7"; depends=[BH graphicalExtremes igraph maps partitions Rcpp RcppArmadillo]; }; sate = derive2 { name="sate"; version="1.1.0"; sha256="0d1b0gp5abh5g7a25ff40xdnncrl2afjnlcc56dbhqkk43gjah17"; depends=[MASS]; }; @@ -16477,12 +16688,12 @@ in with self; { sbmSDP = derive2 { name="sbmSDP"; version="0.2"; sha256="1sl46lqi6w0s7ghv4bywhic56cm2vib3kawprga760m6igargx4y"; depends=[Rcpp RcppArmadillo]; }; sbo = derive2 { name="sbo"; version="0.5.0"; sha256="00pnvpcl6441gf8npf6b6cvzxh0kq4qbfxggjiqdny6lq2nl0d47"; depends=[dplyr Rcpp rlang testthat tidyr]; }; sboost = derive2 { name="sboost"; version="0.1.2"; sha256="1vh3hk15chkyrkpnj4i40542bck9ny45g424bncxdxl9fgxc4nhk"; depends=[dplyr Rcpp rlang]; }; - sbtools = derive2 { name="sbtools"; version="1.1.21"; sha256="1b52lq2xdwaz37jnnwi7lp151448g2gr2nykm32bdwbrxm68smx1"; depends=[cli curl httr jsonlite keyring mime]; }; + sbtools = derive2 { name="sbtools"; version="1.2.0"; sha256="1cbsn99sivqiwy2yd847y4aqk289kzrhdq49abnk68bzvx4nz9wa"; depends=[cli curl httr jsonlite keyring mime]; }; sbw = derive2 { name="sbw"; version="1.1.5"; sha256="10ks912f4xiy0i484vf24w5zz9n7kxlcy77ikz95p8vr5zlqkvgc"; depends=[MASS Matrix quadprog slam spatstat_geom]; }; sc2sc = derive2 { name="sc2sc"; version="0.0.1-7"; sha256="10rdx92g8clwd9c4zylkzfjrivcc837xz4xxpl771lin70kxnfai"; depends=[]; }; scAnnotate = derive2 { name="scAnnotate"; version="0.1.1"; sha256="05akid10d1h8636v5pic4kxn0dby3a864yjwbd5rv6zc4wxq1znr"; depends=[glmnet harmony MTPS Seurat]; }; scBio = derive2 { name="scBio"; version="0.1.6"; sha256="1bpizxm9fbxd4sfapi1ayfg5csacb4dvqbvappd79jkq4mrsk12q"; depends=[doSNOW fields foreach LiblineaR limma raster sp]; }; - scCATCH = derive2 { name="scCATCH"; version="3.2.1"; sha256="00z1lqs04i251gkp9c4iih9hspkgw7jafj66gb6rj1ql6kqhkny1"; depends=[crayon Matrix progress reshape2]; }; + scCATCH = derive2 { name="scCATCH"; version="3.2.2"; sha256="0skd6gsm30bsxr7qi63y890qrx7zq8fvp0ik8jrpwfnsvfgyzx8v"; depends=[Matrix progress reshape2]; }; scCustomize = derive2 { name="scCustomize"; version="1.1.1"; sha256="0cpx4xghz7k54n411m4vdj5kx7z56b64pzqg66cy60wqi8537xry"; depends=[circlize cli cowplot data_table dplyr forcats ggbeeswarm ggplot2 ggprism ggrastr ggrepel glue janitor lifecycle magrittr Matrix paletteer patchwork pbapply purrr rlang scales scattermore Seurat SeuratObject stringi stringr tibble tidyr]; }; scDHA = derive2 { name="scDHA"; version="1.2.1"; sha256="075prhak80d6v9hcxsmn3f1mlc4liahh0fdpn8n6hs3ghczrk5cl"; depends=[cluster coro doParallel foreach igraph Matrix matrixStats Rcpp RcppAnnoy RcppArmadillo RcppParallel RhpcBLASctl torch uwot]; }; scDIFtest = derive2 { name="scDIFtest"; version="0.1.1"; sha256="1hq68g7zf7372cach2qfc7l1l8gh5aqkp66k0cxjnrhmvvb1qcax"; depends=[mirt sandwich strucchange zoo]; }; @@ -16512,22 +16723,21 @@ in with self; { scales = derive2 { name="scales"; version="1.2.1"; sha256="027daznawr9dy0z9s99lh64i4am691hdir01n7gr7vmgpmnkwiar"; depends=[farver labeling lifecycle munsell R6 RColorBrewer rlang viridisLite]; }; scalpel = derive2 { name="scalpel"; version="1.0.3"; sha256="0c8k99i5v2ki2bmcjjr6rfk7y1ds7jlykdwgn5x2zvzpdw7p4vlw"; depends=[gam igraph Matrix protoclust R_matlab]; }; scalreg = derive2 { name="scalreg"; version="1.0.1"; sha256="0kfcgl9cpp6g1qx23s1yrjzn0hi74vmrw567vy9wpsmhk04a5bkx"; depends=[lars]; }; - scam = derive2 { name="scam"; version="1.2-13"; sha256="0qp5g24zwb51x85z8g5x4n9wmqsf33hzwnahkj89rvl38lwq1z9k"; depends=[Matrix mgcv]; }; - scan = derive2 { name="scan"; version="0.57"; sha256="0vx2w68jsfihgy9qby0vx3qa0hk42ns4p7vb999i4fwkm5w526km"; depends=[car kableExtra knitr magrittr mblm nlme readxl yaml]; }; + scam = derive2 { name="scam"; version="1.2-14"; sha256="0w9pm52hrky879ibxa96bav9fvz7swg1kbv0jybf3l1mmfm8cl6c"; depends=[Matrix mgcv]; }; + scan = derive2 { name="scan"; version="0.58"; sha256="0k2l37rd5crpi6nhdzbnkpzz6xlzzgw6qh9hwg57v4ld4q97x48m"; depends=[car kableExtra knitr magrittr mblm nlme readxl yaml]; }; scanstatistics = derive2 { name="scanstatistics"; version="1.1.1"; sha256="04pymq6bikmsjqlwszd9ihv85s5qg8ci5y4dr6jmi95dgdm988pj"; depends=[dplyr ismev magrittr plyr Rcpp RcppArmadillo sets tibble tidyr]; }; scapGNN = derive2 { name="scapGNN"; version="0.1.3"; sha256="15j0xqxyidlmgq0m66y59ppbi8vn1qxicrrm1dfybg2yn0vb0kcj"; depends=[ActivePathways AdaptGauss coop igraph mixtools reticulate]; }; scape = derive2 { name="scape"; version="2.3.3"; sha256="1jb5c335qsbrpsgngs8c1qlibyb7zvvx6mwydfhm1plx4pkcq0n1"; depends=[coda Hmisc lattice]; }; scapesClassification = derive2 { name="scapesClassification"; version="1.0.0"; sha256="0kwl9mbzcmn5qzqbzabf2igbhwbf5m1b1wa8rhm8mfv2qz7psyf2"; depends=[terra]; }; scar = derive2 { name="scar"; version="0.2-2"; sha256="0l2vm6aqi5lrc25akmn826v0zhygys9s167k9dphqn8l3yvlvqbj"; depends=[]; }; scatr = derive2 { name="scatr"; version="1.0.1"; sha256="1c2z722i7d7qflh4mzb8kkix5i22wph98kwz2p98x2mhaml8802d"; depends=[cowplot ggplot2 ggridges ggstance jmvcore R6]; }; - scatteR = derive2 { name="scatteR"; version="0.0.1"; sha256="0w6sf8zkp0jjgrx2nbp43crx3w3dbrld3pk6hzjrqhf2l9wrqygw"; depends=[GenSA rJava scagnostics]; }; scatterD3 = derive2 { name="scatterD3"; version="1.0.1"; sha256="187jq1y5va5npsmpkfyi6mhgynq956590q4z8v1ibadsrcldw34m"; depends=[digest ellipse htmlwidgets]; }; scatterPlotMatrix = derive2 { name="scatterPlotMatrix"; version="0.2.0"; sha256="0jnahr5hxcbs742h4wr0r6yz8qgfli8xqmxwl29cbr32ipkwjmfg"; depends=[htmlwidgets]; }; - scattermore = derive2 { name="scattermore"; version="0.8"; sha256="1rgqm7r1k7j3h2y4i6d1a2y8fzivfcbmr7dj9d367c0w4vc77pfv"; depends=[ggplot2 scales]; }; - scatterpie = derive2 { name="scatterpie"; version="0.1.8"; sha256="183ji1q0wr8fswdrgaw161fvgh8y7j4x9xacf09s2gz6icxcdk56"; depends=[ggforce ggfun ggplot2 rlang tidyr]; }; - scatterplot3d = derive2 { name="scatterplot3d"; version="0.3-43"; sha256="198n5x9bdpdnkasvpsingzhf0j7vml4r5sh6hdv0hq5p6nsvzmwh"; depends=[]; }; + scattermore = derive2 { name="scattermore"; version="1.1"; sha256="1iairy18k1k66863f5avxs5mq1a42477w1kcl6w465is1awc1sb3"; depends=[ggplot2 scales]; }; + scatterpie = derive2 { name="scatterpie"; version="0.2.0"; sha256="06crdylakwig8ryi1w5a6mmfy67gakmk6gp0xbrg749da1asd7a9"; depends=[dplyr ggforce ggfun ggplot2 rlang tidyr]; }; + scatterplot3d = derive2 { name="scatterplot3d"; version="0.3-44"; sha256="1hkfislhzx05y5qqa7pvrils3qf9rhxbf37lkpsjbn9yihs0i70w"; depends=[]; }; scbursts = derive2 { name="scbursts"; version="1.6"; sha256="09yxnq6m35xmp0priavjnh0bdcwkr5hhy7j33cz13xwkrd1cgw5j"; depends=[readxl tibble]; }; - scclust = derive2 { name="scclust"; version="0.2.2"; sha256="0w0qwz8wfdprs2bgv1cjvd2yb6g12jylad21a9rr3w5bkgxprcrp"; depends=[distances]; }; + scclust = derive2 { name="scclust"; version="0.2.3"; sha256="06xwdb0mlfqk5238mla13vqfmh5qwayp018rwsfqn1pwns01lr5s"; depends=[distances]; }; sccore = derive2 { name="sccore"; version="1.0.3"; sha256="1bvqbqh8pkiljy7s3mc67wsr1jlxb19rhd95160xparmrbffpxqb"; depends=[dplyr ggplot2 ggrepel igraph irlba magrittr Matrix pbmcapply pROC Rcpp RcppArmadillo RcppEigen RcppProgress rlang scales tibble uwot withr]; }; sccr = derive2 { name="sccr"; version="2.1"; sha256="0cjlzv92b5qrs43d3ry33zcggiqvsqaf8wq4k19ws9lvgh59b62v"; depends=[dplyr]; }; scdensity = derive2 { name="scdensity"; version="1.0.2"; sha256="173xm3bf8vxl30zk4n451al7m003byg9q4d1l1pfyfa4xnv8qdg9"; depends=[lpSolve quadprog]; }; @@ -16555,24 +16765,24 @@ in with self; { scoper = derive2 { name="scoper"; version="1.2.1"; sha256="1f9bdw7w7zgbjhxxxpld8jss7kbr4k9ksxwzr94wzvapgg06v10p"; depends=[alakazam data_table doParallel dplyr foreach ggplot2 Rcpp rlang scales shazam stringi tidyr]; }; scopr = derive2 { name="scopr"; version="0.3.4"; sha256="1zskhhbdgijkbh4jrvlfd46q4s8fyycqcgcx3lzyvi5xvv6h0sxg"; depends=[behavr curl data_table memoise readr RSQLite stringr]; }; score = derive2 { name="score"; version="1.0.2"; sha256="1p289k1vmc7qg70rv15x05dyb92r7s6315whr1ibi40sqln62a5s"; depends=[msm]; }; - scorecard = derive2 { name="scorecard"; version="0.4.1"; sha256="016dmamwczz6vpi5v59y9zyyz6s6phgrxjhz5v3fmsz82pf6mwl6"; depends=[cli data_table doParallel foreach ggplot2 gridExtra openxlsx stringi xefun xml2]; }; + scorecard = derive2 { name="scorecard"; version="0.4.2"; sha256="10z04v8k27qc5pbwkfqhq33d2m06piay40fl1bdv6lk0139685zl"; depends=[cli data_table doParallel foreach ggplot2 gridExtra openxlsx stringi xefun xml2]; }; scorecardModelUtils = derive2 { name="scorecardModelUtils"; version="0.0.1.0"; sha256="09znaxrv14m58hsk5pac458xbpcsidc6ygcsw4q9j0p4yd80qbvl"; depends=[car e1071 gbm ggplot2 partykit randomForest reshape2 sqldf stringr]; }; scorepeak = derive2 { name="scorepeak"; version="0.1.2"; sha256="1g9n7kjqb9qk5b7hw8ysrc069w9dzc4z29ay6z1kbm0v4kkzp7bi"; depends=[checkmate Rcpp]; }; scoring = derive2 { name="scoring"; version="0.6"; sha256="114jlpbnm15fdan5lr40adxdzwajy3yhdw6dm4kvkvky6qhcx7q5"; depends=[]; }; - scoringRules = derive2 { name="scoringRules"; version="1.0.2"; sha256="16b9ibjyp2513hmwz63qbcsaddsvp7j894q4bn33dqhn7zxzdfrk"; depends=[knitr MASS Rcpp RcppArmadillo]; }; + scoringRules = derive2 { name="scoringRules"; version="1.1.1"; sha256="1qy521jhr5mj7999ncz27f3ggld2rqvgy3y3wznk23772xpgjgrr"; depends=[knitr MASS Rcpp RcppArmadillo]; }; scoringTools = derive2 { name="scoringTools"; version="0.1.2"; sha256="11bxmpqiqqkjyvmyxlnzz7j64jmy1pjw06128vvydmqhjxxyawjh"; depends=[discretization dplyr magrittr sqldf]; }; scoringfunctions = derive2 { name="scoringfunctions"; version="0.0.5"; sha256="140fz1zlx8841xnx4m74lkl7x18ysksqyikjxl60vwmaidbcfhhv"; depends=[]; }; scoringutils = derive2 { name="scoringutils"; version="1.1.0"; sha256="1a2lvc52x8nvkfa3dgrlh76j27cwz05sbw1cg47kcafv07vjzw2x"; depends=[data_table ggdist ggplot2 lifecycle rlang scoringRules]; }; scout = derive2 { name="scout"; version="1.0.4"; sha256="0vr497g7g1xhf75cwjbjsns2fvdzy86iibbf5w0g2xylw82s4lh2"; depends=[glasso]; }; scperturbR = derive2 { name="scperturbR"; version="0.1.0"; sha256="0bddsfms1zaq8hfviw68n5n5mjiwg47hiyzbnnwbimxaamz4rkkb"; depends=[dplyr energy rdist Seurat]; }; - scpi = derive2 { name="scpi"; version="2.2.1"; sha256="1iwrzxpxj4c3hmjf8i7bf1gjlcf0wmv2lv20dwvj54ia355nxk2i"; depends=[abind CVXR doSNOW dplyr ECOSolveR fastDummies foreach ggplot2 magrittr MASS Matrix purrr Qtools reshape2 rlang stringr tibble tidyr]; }; - scplot = derive2 { name="scplot"; version="0.3.0"; sha256="0kr5h9v46h0fgwxf1gnqxavmlak7rxdqjvcgdmrkc6fhg675d91m"; depends=[ggplot2 mblm scan]; }; + scpi = derive2 { name="scpi"; version="2.2.4"; sha256="0yvxwq429qwf2v0shci8dk6w7rqcz15060ykrpv3wac42jw8qjzz"; depends=[abind CVXR doSNOW dplyr ECOSolveR fastDummies foreach ggplot2 magrittr MASS Matrix purrr Qtools reshape2 rlang stringr tibble tidyr]; }; + scplot = derive2 { name="scplot"; version="0.3.1"; sha256="0iway8z6z6ywbip0vs3h7kr50l7hlhjh2ad48zs895hfhsnbkc4l"; depends=[ggplot2 mblm scan]; }; scpoisson = derive2 { name="scpoisson"; version="0.0.1"; sha256="0v8is1y9mqbvcvhqay1a0ycbhfxwxqkxifmbxb0sjzxg02mla65x"; depends=[broom dplyr ggplot2 glmpca magrittr Matrix matrixStats purrr Rdpack Seurat SeuratObject tidyr WGCNA]; }; scqe = derive2 { name="scqe"; version="1.0.0"; sha256="1113zbc2jyq03fh8l1h6yidf25hh5dcqrk6wkk9flqwnbrvfkwrr"; depends=[AER ggplot2]; }; scquantum = derive2 { name="scquantum"; version="1.0.0"; sha256="0v263qxf3qp7hra3l8fyw8a625z9ym2h2zg5b9lsysdiznbi9bww"; depends=[]; }; scraEP = derive2 { name="scraEP"; version="1.2"; sha256="1qkfd4bp3sd3xrh9bdaqwmmvx7f9rvjcch6hi2p387ky04ywwqn4"; depends=[data_table rvest XML xml2]; }; scrappy = derive2 { name="scrappy"; version="0.0.1"; sha256="0dckq2pdqabnv5cinfqgbrjxp55x4z81lp8xh4yhyb2cnz9gdsqy"; depends=[magrittr rvest xml2]; }; - scribe = derive2 { name="scribe"; version="0.1.0"; sha256="19lq33z1kaw7xybqldmvbg70j8k7hk3mv8arvd7dqzyfxp6lg3kk"; depends=[]; }; + scribe = derive2 { name="scribe"; version="0.2.0"; sha256="1xkzyfxgnh0725aya6v3jxc2sxhd2xlw9lzff7dif32ih2055vrl"; depends=[]; }; scrime = derive2 { name="scrime"; version="1.3.5"; sha256="0y2mh9fsffjf3i15bafpasa17z99c1s75r8g6h4hgcwfgpjx75sx"; depends=[]; }; scriptName = derive2 { name="scriptName"; version="1.0.1"; sha256="1rd3qj7c7pg454a5mxhr64g4kp15cqf5lf8lbsh9x88llvkjci5v"; depends=[purrr rlang]; }; scriptexec = derive2 { name="scriptexec"; version="0.3.1"; sha256="0k10x0npdga1nmchzz9xxv0qijnq2n9pb49z1g06bmva1z8wb4wg"; depends=[]; }; @@ -16583,7 +16793,7 @@ in with self; { scrutiny = derive2 { name="scrutiny"; version="0.2.4"; sha256="0iw6yiyk7x3gzpra2zahwmv4vcjzclvjkjrkric6a7ydq1qxdnl1"; depends=[cli dplyr glue magrittr purrr rlang stringr tibble]; }; scrypt = derive2 { name="scrypt"; version="0.1.6"; sha256="11ncpv01a5lgbxl46g07a43ncjp7jdhrrciasxvxc1d56cz26jh1"; depends=[Rcpp]; }; scryr = derive2 { name="scryr"; version="1.0.0"; sha256="040x2qvgrr8j5k3y2g24kngjys271radqhh3jsqi07dhg9bybr5q"; depends=[dplyr httr purrr tibble]; }; - scs = derive2 { name="scs"; version="3.0-1"; sha256="04srf33zw4dxv22b1h5qwjch5yg7hrvk4iq8yvxqnbr8qzp1x26n"; depends=[]; }; + scs = derive2 { name="scs"; version="3.2.4"; sha256="13r944b9ip078hqwdpzn3jv21zm47d9l2b1f5y6glcj5pxs9iwy3"; depends=[]; }; sctransform = derive2 { name="sctransform"; version="0.3.5"; sha256="02vfgv6v3knmn5nxadjyjkzqmni1sgaf3f9ywm7d0knn0pgmd3n0"; depends=[dplyr future future_apply ggplot2 gridExtra magrittr MASS Matrix matrixStats Rcpp RcppArmadillo reshape2 rlang]; }; scuba = derive2 { name="scuba"; version="1.11-1"; sha256="1gmwzwkj0ylaqwz33djrv3hrqmwhr23q53yp94hv04mhijdh9myl"; depends=[]; }; scutr = derive2 { name="scutr"; version="0.1.2"; sha256="0wq20zvn839iws9qzaknfisr9r2pipdcvxfjvqmk1bw9irfgj3gm"; depends=[mclust smotefamily]; }; @@ -16597,7 +16807,7 @@ in with self; { sdcLog = derive2 { name="sdcLog"; version="0.5.0"; sha256="0ssjgpfg3z8j9s47nmiw6a5jcsi4pppdxidvzm3sryjz4klallwg"; depends=[broom checkmate cli data_table mathjaxr]; }; sdcMicro = derive2 { name="sdcMicro"; version="5.7.5"; sha256="071m7szdwmlzljrlms4lpz4cdka5lwms925zkkixfbx5j4i0vray"; depends=[car carData cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase shiny shinyBS VIM xtable]; }; sdcSpatial = derive2 { name="sdcSpatial"; version="0.5.2"; sha256="0bnq63akzngvf6r9csg11cb98mhwd8ybrqrk4v2i0iiln70sf7b6"; depends=[raster]; }; - sdcTable = derive2 { name="sdcTable"; version="0.32.4"; sha256="07841anyxpxjm1r5yhcxjndpnbxclrdsf9ipppgysyk0lj2ij636"; depends=[data_table glpkAPI knitr Matrix progress Rcpp Rglpk rlang sdcHierarchies slam SSBtools stringr]; }; + sdcTable = derive2 { name="sdcTable"; version="0.32.5"; sha256="0fw2g541cqylj6l716x50yrp86kkdsz3cm7d1zzvvz48m9v6iv00"; depends=[data_table glpkAPI knitr Matrix progress Rcpp Rglpk rlang sdcHierarchies slam SSBtools stringr]; }; sde = derive2 { name="sde"; version="2.0.18"; sha256="1rk9wqaam21fipsinag3ychfkl6p7fpgbamr0119v8gjgskajxl8"; depends=[fda MASS zoo]; }; sdef = derive2 { name="sdef"; version="1.7"; sha256="0x2b8shp02ik0dd11wi3jcrl9h9m963fnkfy47fwwhav9x6jg0jf"; depends=[]; }; sdetorus = derive2 { name="sdetorus"; version="0.1.8"; sha256="1bf622k9szas3bfxz9f82dn28l1hdqxzpvgqwvzygy9vp2gi4gyp"; depends=[colorRamps mvtnorm Rcpp RcppArmadillo]; }; @@ -16610,8 +16820,7 @@ in with self; { sdprisk = derive2 { name="sdprisk"; version="1.1-6"; sha256="061x78irryc5phd8bv9cs2mfgiajgwmr85ryp1r47anadydb2haa"; depends=[numDeriv PolynomF rootSolve]; }; sdpt3r = derive2 { name="sdpt3r"; version="0.3"; sha256="02qv889mkzcilxzszzqcqgn9z5zmki0093mdriradbl1y8a27bp5"; depends=[Matrix]; }; sdwd = derive2 { name="sdwd"; version="1.0.5"; sha256="14x5hjdbkr5lsh8x3wninxg88acqh6q50famf6qjlfm7727rdysc"; depends=[Matrix]; }; - seAMLess = derive2 { name="seAMLess"; version="0.1.0"; sha256="18rpka0qq6hh7v241bv5k8ln03qk90lpf3ak2plq861lnf3p0wxb"; depends=[Biobase ggplot2 ggtern randomForest]; }; - seacarb = derive2 { name="seacarb"; version="3.3.1"; sha256="0fgz4cqmrp4gmf361mcjwxzpnj9zl03wpn6hrpym42b3l615day3"; depends=[gsw oce SolveSAPHE]; }; + seacarb = derive2 { name="seacarb"; version="3.3.2"; sha256="11jp08s9kjf4aqw1i9rdy9fba14pafqm00bhxx9ixhw60bb7zb4a"; depends=[gsw oce SolveSAPHE]; }; seagull = derive2 { name="seagull"; version="1.1.0"; sha256="1kmidbxzs8zrjji6wsn8nrdv5mpfmmf6q30h1w4rc0swx1ycsgx4"; depends=[matrixStats Rcpp RcppArmadillo]; }; sealasso = derive2 { name="sealasso"; version="0.1-3"; sha256="0j43my9mj73ada3bzzxazgwcahm2bhzbmqc128xara46gxvwrbzz"; depends=[lars]; }; searchConsoleR = derive2 { name="searchConsoleR"; version="0.4.0"; sha256="1ffg5359pbwylw265wbahwl3hy1b0qqv4al71v5r8lgfircibn0j"; depends=[googleAuthR stringr]; }; @@ -16624,12 +16833,11 @@ in with self; { seasonalview = derive2 { name="seasonalview"; version="0.3"; sha256="1l705yc7ssldsfckbgnvd95sh3zzhpkmf1rr6ar2s60s3wsyly4n"; depends=[dygraphs htmlwidgets openxlsx seasonal shiny shinydashboard xtable xts zoo]; }; seastests = derive2 { name="seastests"; version="0.15.4"; sha256="1xy2hacd57v75y5snhn4al7bi71wr994jy6m2sdr6qzzsd5pbgpc"; depends=[forecast xts zoo]; }; seawaveQ = derive2 { name="seawaveQ"; version="2.0.2"; sha256="1x4vvassal1lwb9xnwisrhlx2maaqxl84h7klfy8yg9x80fdrhsw"; depends=[lubridate plyr reshape2 rms survival]; }; - secr = derive2 { name="secr"; version="4.5.10"; sha256="1z7hg86bwckm2v9bm14b7gl2dqnc5d01b0ar190x6nbdcfkg1m1h"; depends=[abind BH MASS mgcv nlme raster Rcpp RcppEigen RcppNumerical RcppParallel sf stringr terra]; }; + secr = derive2 { name="secr"; version="4.6.0"; sha256="1fy60gjqxj7acic9kyg2d81lslvcizpx17hds58jhdr4ldw1rw8r"; depends=[abind BH MASS mgcv nlme raster Rcpp RcppEigen RcppNumerical RcppParallel sf stringr terra]; }; secrdesign = derive2 { name="secrdesign"; version="2.8.2"; sha256="1qldq9f4jgyqwsa0yn3q877680qp8nhg8kfcd62n1wr66mmd8f45"; depends=[abind BH kofnGA Rcpp RcppArmadillo secr sf]; }; secret = derive2 { name="secret"; version="1.1.0"; sha256="063gpyc2s2l6zw1j8b8ppzsv9kjsf0s77s5wcn7ipmwkj8qr2g4b"; depends=[assertthat curl jsonlite openssl rprojroot]; }; secrettext = derive2 { name="secrettext"; version="0.1.0"; sha256="129v524yyb464mcij7hvzv05cxliaz5nm7v30g9g9ppskcdqhsx2"; depends=[dplyr magrittr rlang stringr testthat tidyr]; }; - secrlinear = derive2 { name="secrlinear"; version="1.1.4"; sha256="1qa0vapnhiblz57jrbj9zd1gdmxc1nzzq41b4464373pjfvm5wvj"; depends=[igraph maptools MASS rgdal secr sp]; }; - secsse = derive2 { name="secsse"; version="2.1.7"; sha256="0cad1flym8bhra11chc16ylfa3i0nhi9jyy6r4nacwh6qpbbavjg"; depends=[ape apTreeshape DDD deSolve doParallel foreach geiger phylobase]; }; + secrlinear = derive2 { name="secrlinear"; version="1.2.1"; sha256="0bb8wy9rmlznlpcv2ffv1pgxv9lnsn1ppy3z6zqbnr82c57dk44v"; depends=[igraph MASS secr sf sp]; }; secuTrialR = derive2 { name="secuTrialR"; version="1.1.1"; sha256="0i45zhbbvq052yn04j0xg69minclr7ns7f1pqdahx1cmf274pl42"; depends=[dplyr haven lubridate magrittr purrr readr readxl rlang stringr tibble tidyr]; }; secure = derive2 { name="secure"; version="0.6"; sha256="1i0csl90w4qvhpnrxwrdhxzlmjw7hn30py36r41cd28igycz2bw3"; depends=[MASS Rcpp RcppArmadillo]; }; sedproxy = derive2 { name="sedproxy"; version="0.7.5"; sha256="1n5970pbdc0zl9vh0fslirlww56as5c090mnhzbic1fdzkhli245"; depends=[dplyr ggplot2 mvtnorm rlang tidyr]; }; @@ -16637,11 +16845,11 @@ in with self; { seeclickfixr = derive2 { name="seeclickfixr"; version="1.1.0"; sha256="1agsqq2msrqrssffc6liyjjs6nqm90xy2inlcjbkdac5dhinjc4n"; depends=[jsonlite RCurl]; }; seecolor = derive2 { name="seecolor"; version="0.2.0"; sha256="1qfiq8dmakban9mh7rizm54risq48vw1ck7i5yl48ggqmr47mvzf"; depends=[crayon dplyr fansi ggplot2 magrittr purrr rstudioapi stringr]; }; seedCCA = derive2 { name="seedCCA"; version="3.1"; sha256="01v8hwhw5pap69n11czn0ma22vakhi3kfbly0rzasw9fsvf66xhg"; depends=[CCA corpcor]; }; - seededlda = derive2 { name="seededlda"; version="0.8.4"; sha256="144417zvax6kw4snciv6mkf13ni1zgjvj483p5xvrzgvkf5487q4"; depends=[Matrix proxyC quanteda Rcpp RcppArmadillo RcppParallel]; }; + seededlda = derive2 { name="seededlda"; version="0.9.1"; sha256="0smw5hng5dd3v0jamypms82qwhnhj672hiz44hq06489mixd02mg"; depends=[Matrix proxyC quanteda Rcpp RcppArmadillo RcppParallel]; }; seedr = derive2 { name="seedr"; version="0.3.0"; sha256="15drbc0iplb97a2sym6jnrwij7ak5qckcw98n3m65x45apjwdmhq"; depends=[binom data_table]; }; seedreg = derive2 { name="seedreg"; version="1.0.3"; sha256="07wg48pn2v3wcwf5a34b4hc0s1flfpphrylr4d9bayaxsvi3k0xk"; depends=[boot car crayon dplyr drc emmeans ggplot2 gridExtra hnp multcomp multcompView sf stringr]; }; seeds = derive2 { name="seeds"; version="0.9.1"; sha256="0adk7y5ripg78bwkdgnlfwq9w9h6mlpdrikgbnn5z8az2qahc0in"; depends=[callr coda Deriv deSolve dplyr ggplot2 Hmisc MASS matrixStats mvtnorm pracma R_utils Ryacas statmod tidyr]; }; - seeker = derive2 { name="seeker"; version="1.1.0"; sha256="15nlh9dkdywmf73sal24jdlsrndz087anxisddbwgjclynxiiiqq"; depends=[affy AnnotationDbi BiocManager biomaRt checkmate curl data_table foreach GEOquery glue jsonlite qs R_utils RCurl readr sessioninfo tximport withr yaml]; }; + seeker = derive2 { name="seeker"; version="1.1.3"; sha256="0vq7spb0wdlzgzgljqsrf7ym6in8vbis2607fj2gpxm0643gff3k"; depends=[affy AnnotationDbi BiocManager biomaRt checkmate curl data_table foreach GEOquery glue jsonlite qs R_utils RCurl readr sessioninfo tximport withr yaml]; }; seer = derive2 { name="seer"; version="1.1.8"; sha256="13r26iyciq9wbzn4r3447s4j4m6k5sdymp704i6hkf0fphv4340c"; depends=[dplyr forecast forecTheta furrr future magrittr purrr randomForest stringr tibble tsfeatures urca]; }; seewave = derive2 { name="seewave"; version="2.2.0"; sha256="0bi1l47l3846c18k6h2vrv0xp9xh00n544a578jrndahzrj1hfwl"; depends=[tuneR]; }; seg = derive2 { name="seg"; version="0.5-7"; sha256="165hl55vzyf3jqlykqji37p2syzhc8dxdjxd4wwr562qnlymzszx"; depends=[sp splancs]; }; @@ -16651,7 +16859,7 @@ in with self; { segen = derive2 { name="segen"; version="1.1.0"; sha256="1l60rb1w0rfp1rv5favi4yxzyqs1nb1881mcz66xv789r3awhp11"; depends=[entropy fANCOVA fastDummies ggplot2 greybox imputeTS lubridate modeest moments narray philentropy purrr readr Rfast scales tictoc]; }; segmag = derive2 { name="segmag"; version="1.2.4"; sha256="1i717xg1z7s35pkwzywgjf9wx7zj9xksv0k87h7p1q62y073qbqm"; depends=[plyr Rcpp]; }; segmenTier = derive2 { name="segmenTier"; version="0.1.2"; sha256="01xbcddinjbkbqkwq2lnsxd3gw8fxys58p498dc2lw8psz3g2wgc"; depends=[Rcpp]; }; - segmented = derive2 { name="segmented"; version="1.6-3"; sha256="0x7k5ycbvnfqsygrcyaaxnl0060x6869b345xc697hhr9sfxb4ai"; depends=[MASS nlme]; }; + segmented = derive2 { name="segmented"; version="1.6-4"; sha256="14ci6hd5xlrz22gvnvy2fzpnp50fbds3wpx4mf2fgi5i7sp0hb27"; depends=[MASS nlme]; }; segmentr = derive2 { name="segmentr"; version="0.2.0"; sha256="0q5kxxiw0akpk7w2a2l9zp7v4pvqblzdvrld5fjyl5f6h8hsb40z"; depends=[foreach glue Rcpp]; }; segmetric = derive2 { name="segmetric"; version="0.3.0"; sha256="1cpkak3d91xjz6z4ls29ys1m5gmkqm7pq86vs88xy51z0av4kji7"; depends=[magrittr sf units]; }; segregation = derive2 { name="segregation"; version="0.6.0"; sha256="0yajbbrbrkk6blb6r5y5fwvfz0j8kbc8fr91kb4f53j1afcbbhbx"; depends=[data_table]; }; @@ -16673,7 +16881,7 @@ in with self; { sem = derive2 { name="sem"; version="3.1-15"; sha256="05hk72zxvyv6kkjhk5y6qw253c64108az7030z8j1sz8wq03n0md"; depends=[boot MASS mi]; }; semEff = derive2 { name="semEff"; version="0.6.1"; sha256="0vqvmjp9b9qcl0l3gbxijp73qmcy0czdgc0hq2mr129l7qshigla"; depends=[boot gsl lme4]; }; semPlot = derive2 { name="semPlot"; version="1.1.6"; sha256="0s9bp4pfsllg1k4x8a36yw82fw432dyz0xvmvi8dw9l12q3jkx8i"; depends=[colorspace corpcor igraph lavaan lisrelToR OpenMx plyr qgraph rockchalk sem XML]; }; - semPower = derive2 { name="semPower"; version="1.2.0"; sha256="1y3j6b3ab19fqxzqrrssjcj7f0za0vkwq97s7qs6hwj9yfsg1nas"; depends=[]; }; + semPower = derive2 { name="semPower"; version="2.0.1"; sha256="0i2lzkg4j3igm249y0mpdbd9ff9b33lwgy0n015h43jjy9qmgp78"; depends=[]; }; semTable = derive2 { name="semTable"; version="1.8"; sha256="0qr420rnz59q8arf6x05iy1zyh7pv31ldi2rsw1j2a00fbpp4ndf"; depends=[kutils lavaan plyr stationery xtable]; }; semTools = derive2 { name="semTools"; version="0.5-6"; sha256="1wnakz76c4mgkwvx3iycmvgrzqys860jg9zpkba0ln5c08ycw8pm"; depends=[lavaan pbivnorm]; }; semantic_dashboard = derive2 { name="semantic.dashboard"; version="0.2.1"; sha256="0518pdxgjjv8ql1aaysk64pv1pa01bbg3s7qdibw1v0c6pcf3adb"; depends=[checkmate glue htmltools shiny shiny_semantic]; }; @@ -16685,6 +16893,7 @@ in with self; { semiArtificial = derive2 { name="semiArtificial"; version="2.4.1"; sha256="0zsn3r5n7n3dsa02i194lr6ail7mizq9xp8x3kc5k17z4ckcfysd"; depends=[cluster CORElearn flexclust fpc ks logspline MASS mcclust nnet robustbase RSNNS StatMatch timeDate]; }; semicmprskcoxmsm = derive2 { name="semicmprskcoxmsm"; version="0.2.0"; sha256="00nxmyp4g1pxzqrw3zd5il92vinzpy12wnjnpm33nbh4wx2i5356"; depends=[fastGHQuad ggplot2 Rcpp survival twang]; }; seminr = derive2 { name="seminr"; version="2.3.2"; sha256="1385wwh7b0fq4jqm6ragdywwafdidq4scbljzbdpvm3wis07abqv"; depends=[DiagrammeR DiagrammeRsvg glue knitr lavaan rmarkdown testthat webp]; }; + semlbci = derive2 { name="semlbci"; version="0.10.3"; sha256="0s85i82yfa305j7az775n41qn17z197invgas06nj09yk0v87jni"; depends=[ggplot2 ggrepel lavaan MASS nloptr pbapply rlang]; }; semmcci = derive2 { name="semmcci"; version="1.0.4"; sha256="1pyb6l8y3mkh6jdxjk2mi2jif3i1s3cvnmlq95gyahpnwf4mi5jw"; depends=[lavaan]; }; semmcmc = derive2 { name="semmcmc"; version="0.0.6"; sha256="13asqiw3zazh9k3p39582a0bzm00gmagls2w76kvpygilj4r5391"; depends=[MASS msm]; }; semnar = derive2 { name="semnar"; version="0.8.1"; sha256="18c509yh52sdmvm60p0kzyz86fmzi0by4gnb2jw8nppv8qlnz6zb"; depends=[jsonlite leaflet lubridate parsedate urlshorteneR]; }; @@ -16710,18 +16919,18 @@ in with self; { sensitivitymv = derive2 { name="sensitivitymv"; version="1.4.3"; sha256="1ga8mf92niiv1z3g3kv5ha5xdd1089aaqp19dz68kv8a396vhy1j"; depends=[]; }; sensitivitymw = derive2 { name="sensitivitymw"; version="2.1"; sha256="1sjq8lxw9iy5s5a19xaxm05wnz9yg4llpbnljydini511pyshzzx"; depends=[]; }; sensmediation = derive2 { name="sensmediation"; version="0.3.0"; sha256="0pmhlc5aqz1vwl4fpn38nkqy63pbq6q62fk9xjja4khrq35zh9yb"; depends=[maxLik mvtnorm]; }; - sensobol = derive2 { name="sensobol"; version="1.1.3"; sha256="0i82zs7cxymic7b7g5q7glrbva25gd61fbhkw8qdp1incsmxxvhi"; depends=[boot data_table deSolve ggplot2 lhs magrittr matrixStats randtoolbox Rcpp RcppArmadillo Rdpack Rfast rlang scales stringr]; }; + sensobol = derive2 { name="sensobol"; version="1.1.4"; sha256="1rk66gag54znjm9yxwk25l3yn3dxpi6qqyh2l3qgxhihpkw3f7a0"; depends=[boot data_table deSolve ggplot2 lhs magrittr matrixStats randtoolbox Rcpp RcppArmadillo Rdpack Rfast rlang scales stringr]; }; sensory = derive2 { name="sensory"; version="1.1"; sha256="1zd0ajrymxi6gygcq9fqgwgy0g6c3cqz53x0k5m0ihbmh11rc7s7"; depends=[gtools MASS Matrix]; }; senstrat = derive2 { name="senstrat"; version="1.0.3"; sha256="0j6mb55v5ivqvk8nn8fjlzrbdgj6csa58yc6gy1g07m7gk2qz2np"; depends=[BiasedUrn MASS]; }; sentencepiece = derive2 { name="sentencepiece"; version="0.2.3"; sha256="1cfk450asadp3bbv1px64kf62rdhfak2drnq4y913jjjq4radxwh"; depends=[Rcpp]; }; sentiment_ai = derive2 { name="sentiment.ai"; version="0.1.1"; sha256="1wz34m5imzfwzf1ywidgb1xscsvf9nhri3w3wa2d8r7bk0nvlfjs"; depends=[data_table jsonlite reticulate roperators tensorflow tfhub xgboost]; }; sentimentr = derive2 { name="sentimentr"; version="2.9.0"; sha256="0i0lg2fl079wjv30lpqcxhx62miqakb9kzwwhrr4c18kl0bxbaav"; depends=[data_table ggplot2 lexicon stringi syuzhet textclean textshape]; }; sentometrics = derive2 { name="sentometrics"; version="1.0.0"; sha256="06qvwfgshr70n1qgf2zqjvycwwrak8d5hfyn3v5k2qzkfaxkihmm"; depends=[caret data_table foreach ggplot2 glmnet ISOweek quanteda Rcpp RcppArmadillo RcppParallel RcppRoll stringi]; }; - sentopics = derive2 { name="sentopics"; version="0.7.1"; sha256="0xbs2ha6xl37169a8qmbslia8blm87x981q8rcv8p8dvbazy7vbf"; depends=[data_table quanteda Rcpp RcppArmadillo RcppHungarian RcppProgress]; }; + sentopics = derive2 { name="sentopics"; version="0.7.2"; sha256="0gi52lxkmhbhlsbpamwcrji1y664lrwk3k0pigc2gad3za9rdimc"; depends=[data_table quanteda Rcpp RcppArmadillo RcppHungarian RcppProgress]; }; sentryR = derive2 { name="sentryR"; version="1.1.0"; sha256="0kz81dbxg4zyns829cjhjm2g88pxzaaxdk7c8qabvl0zgqys2chy"; depends=[httr jsonlite stringr tibble uuid]; }; - separationplot = derive2 { name="separationplot"; version="1.3"; sha256="0ggyr4asp86hvdp4bwdkljz9b2gzdxm2y9nbz2srlgh3m4hlz2cs"; depends=[foreign Hmisc MASS RColorBrewer]; }; + separationplot = derive2 { name="separationplot"; version="1.4"; sha256="1dvm073mckn6mkyf6fvclc8glsr8d3p2413x5i91w00hphm2lg8z"; depends=[foreign Hmisc MASS RColorBrewer]; }; sepkoski = derive2 { name="sepkoski"; version="0.0.1"; sha256="1jx1ilbz7md501035vklk5bsw8krg8dn18pwkqynsacqy8wjwl2s"; depends=[]; }; - seq2R = derive2 { name="seq2R"; version="1.1.0"; sha256="10iyqiala5ggi2vr1gcfb2drpcc0n2y6iqa3drk0iw07jsrm0j7b"; depends=[seqinr]; }; + seq2R = derive2 { name="seq2R"; version="2.0.0"; sha256="1ynhmfch8w2s0mh55km6v9afn0z3p43ckg79cz08d2z25lv5syrj"; depends=[seqinr]; }; seqCBS = derive2 { name="seqCBS"; version="1.2.1"; sha256="176ggpdcgmpsjixmz0ldknyd0vw120kjyrid3bq2bn4cgkwzb74z"; depends=[clue]; }; seqDesign = derive2 { name="seqDesign"; version="1.2"; sha256="10p8ldj83mvhpcz1yas4xns5qh8zbs533na8nv87phngi8dsb76m"; depends=[survival]; }; seqHMM = derive2 { name="seqHMM"; version="1.2.4"; sha256="0ray7s8ic62fzwsmdf78ip746f7ncpj2pj5jysahwl87kkvzj7gy"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; @@ -16732,11 +16941,11 @@ in with self; { seqimpute = derive2 { name="seqimpute"; version="1.8"; sha256="1vivs790zbwm8c7fwifz0nj0n9wzjmr8whz0f4pwp44gvcickxwn"; depends=[Amelia cluster dfidx doRNG doSNOW dplyr foreach mice mlr nnet plyr ranger rms stringr swfscMisc TraMineR]; }; seqinr = derive2 { name="seqinr"; version="4.2-30"; sha256="0jzfbzai2r5bprynq337s1a4k66m34p5k9nzzmbyzvk7719zxy7s"; depends=[ade4 segmented]; }; seqmagick = derive2 { name="seqmagick"; version="0.1.5"; sha256="0h1vdsx88k3mpajfv0cgswk2s1560zm6y776b4dqrdkvkcgdbb3g"; depends=[Biostrings magrittr]; }; - seqminer = derive2 { name="seqminer"; version="8.6"; sha256="1fm76mam5hp5v0hj27ywna7vafrw7mnwph30fqdb17163rrhr1ca"; depends=[]; }; + seqminer = derive2 { name="seqminer"; version="8.9"; sha256="1cnsy1cjz4rcm32hzcvr1d43y4m7sdkzim1mwsn3490mf3xmi3i1"; depends=[]; }; seqmon = derive2 { name="seqmon"; version="2.4"; sha256="1aqrg9aqvsabg5mm9jfj5vaxxaapfs1qw3yyzbx7vsspcgjdhyca"; depends=[]; }; seqtest = derive2 { name="seqtest"; version="0.1-0"; sha256="1bdfww9szh7h278id5xpfc39mxkcix3yvsdwc68wx3q3x0wxhqhq"; depends=[]; }; sequences = derive2 { name="sequences"; version="0.5.9"; sha256="17571m525b6a3k4f0m936wfq401181gx1fpb7x4v0fhaldzdmk3a"; depends=[Rcpp]; }; - sequoia = derive2 { name="sequoia"; version="2.5.3"; sha256="1srbd7q33a81bpc2hma4a7kix1y5xvhp2dcy5yb01867cbrhiqa9"; depends=[plyr]; }; + sequoia = derive2 { name="sequoia"; version="2.5.6"; sha256="1nw0yq6b4apm26dxzbrzqdndv55lkv8diayp6ghj93n6c0yws720"; depends=[plyr]; }; sergeant = derive2 { name="sergeant"; version="0.9.1"; sha256="0mgrrlny1qfddznyc34awh8vkbjnyskbyqrxszdhsm2c5wgp2nwh"; depends=[bit64 DBI dbplyr dplyr htmltools httr jsonlite magrittr purrr readr scales stringi tibble]; }; serial = derive2 { name="serial"; version="3.0"; sha256="1y1gj0lcdn5apiv6c6arks6pqhsbvnrfym6n2izjarx2c27ijrjj"; depends=[]; }; seriation = derive2 { name="seriation"; version="1.4.2"; sha256="142hzxra9ji4473hbf6sg4ksp9dkwz8bpik0i8di5a2s6yyfq6dd"; depends=[ca cluster colorspace gclus MASS qap registry TSP]; }; @@ -16745,7 +16954,7 @@ in with self; { serpstatr = derive2 { name="serpstatr"; version="0.2.0"; sha256="1l7hj4npnggmg6fsk5lydg6vrad791hvmv9rhx7yb0nsa1pzi155"; depends=[httr]; }; serrsBayes = derive2 { name="serrsBayes"; version="0.5-0"; sha256="1w8fs9k4zhy0hwkm30dvi360n28cl2gn9vdqaak64g0nlvb9jy1w"; depends=[Matrix Rcpp RcppEigen truncnorm]; }; servosphereR = derive2 { name="servosphereR"; version="0.1.1"; sha256="0m1fjd3f1s2ss54xmcrm3p0c33hhi2dj0vim790g4y0mw2aicc8l"; depends=[data_table dplyr magrittr purrr rlang]; }; - servr = derive2 { name="servr"; version="0.26"; sha256="0703sbi9c825sshp40qcnvlb39qbgcyly5kzffq7fbsv1phdg23m"; depends=[httpuv jsonlite mime xfun]; }; + servr = derive2 { name="servr"; version="0.27"; sha256="1iaqah3896660d609fb6960x3mg17jak3j5akmmli0z4pdb3rhh1"; depends=[httpuv jsonlite mime xfun]; }; sesem = derive2 { name="sesem"; version="1.0.2"; sha256="0b1xzv38wpkhhlq87xrvlh45b8ksbi8bg4ar5hrf8gxa19r9rmi5"; depends=[gplots lavaan mgcv]; }; sessioninfo = derive2 { name="sessioninfo"; version="1.2.2"; sha256="1jy7n37qnrb4fgzmn8s8yf7kv29yw27x8zklwf8qdb2kgj2q6qpm"; depends=[cli]; }; set = derive2 { name="set"; version="1.2"; sha256="0f36dp9k0nxp1amsd7ybwgbv0vxvgd1kns7cbfsbsh0kljxyplzp"; depends=[do]; }; @@ -16755,7 +16964,8 @@ in with self; { setter = derive2 { name="setter"; version="0.0-1"; sha256="10fwrx8yysp99rrkbnn3rbz79vyzr2h3p7zxxlqapw1k2lllp0r5"; depends=[assertive_base]; }; settings = derive2 { name="settings"; version="0.2.7"; sha256="1i9ij5k8p2v9gxr48vas8hj337mbyx9c4ywv9bbdwkz6kzah46k5"; depends=[]; }; sever = derive2 { name="sever"; version="0.0.7"; sha256="10jckf6q31blsl1yhs5f1mx7b8sm8sqb86iakcvaslf651ijx81m"; depends=[cli htmltools shiny]; }; - sf = derive2 { name="sf"; version="1.0-12"; sha256="11qjv70wm5wmycmsnmacl3nqapadf5iq7jlpcbx1sjw2ipsyny1p"; depends=[classInt DBI magrittr Rcpp s2 units]; }; + sewage = derive2 { name="sewage"; version="0.2.5"; sha256="171rd59w90q29a9ywdx5225gw6m57bz9rcj25ql38jk62xdmrx69"; depends=[cli DiagrammeR glue]; }; + sf = derive2 { name="sf"; version="1.0-13"; sha256="11lcc57vqip1zj8hi09mnisl9jiqqxwx6b06jl752dayxi2109br"; depends=[classInt DBI magrittr Rcpp s2 units]; }; sfaR = derive2 { name="sfaR"; version="0.1.1"; sha256="1j8ans7lhssq64crp2fwfbl6n09h7zl7y6s8zwkdmxgvydvh9n22"; depends=[dplyr emdbook fBasics Formula gsl marqLevAlg MASS maxLik moments nleqslv numDeriv primes qrng randtoolbox trustOptim ucminf]; }; sfadv = derive2 { name="sfadv"; version="1.0.1"; sha256="1rfpm6km5pckwhqgpvidm6qsj5sjdaqqj5b0sgvpslivfa4c80cr"; depends=[gmm minpack_lm]; }; sfarrow = derive2 { name="sfarrow"; version="0.4.1"; sha256="1hslyha1w5x1ncawbwbx792cqa3031v26g9lssmb0n1hihzvfp8g"; depends=[arrow dplyr jsonlite sf]; }; @@ -16768,7 +16978,7 @@ in with self; { sfinx = derive2 { name="sfinx"; version="1.7.99"; sha256="14v47y00qwvc2s0vzjw19hwn85nzj8lna539c75qq6zkn6kir6va"; depends=[]; }; sfnetworks = derive2 { name="sfnetworks"; version="0.6.3"; sha256="0caqqcdkm5g8f08k7dws6gcm560m88w6g98sbx0bsamf54cxda33"; depends=[crayon dplyr igraph lwgeom rlang sf sfheaders tibble tidygraph units]; }; sfo = derive2 { name="sfo"; version="0.1.2"; sha256="0q821i9w4kbzpmiym1sha086nr59yydbyig84jy7hws186lkvi7m"; depends=[]; }; - sfsmisc = derive2 { name="sfsmisc"; version="1.1-14"; sha256="1vxkziprndrzc5sdz36i20qdqfcyw8m87vpxm3jccf6pqbc45adw"; depends=[]; }; + sfsmisc = derive2 { name="sfsmisc"; version="1.1-15"; sha256="1rl1gh79mkpg1ms9mrfyd6yrvvlxap01yx11mhngd1x2hg7l5yja"; depends=[]; }; sft = derive2 { name="sft"; version="2.2-1"; sha256="0fxz64ba58n6ghfqsgq64n1c7qkvi8c3lsa86732mil9w71yxw33"; depends=[fda SuppDists]; }; sftime = derive2 { name="sftime"; version="0.2-0"; sha256="1ymi60ag8kqb3293bdcvb83zwsgrz000ylifjvlpzzmh1xsisanq"; depends=[sf]; }; sftrack = derive2 { name="sftrack"; version="0.5.4"; sha256="0cm87fla8bnhp1j35wq2llw1jziqhgfcj1yn503z4ds40gh4wnqa"; depends=[sf]; }; @@ -16787,6 +16997,7 @@ in with self; { sgolay = derive2 { name="sgolay"; version="1.0.3"; sha256="0qry7286kw6ks5kc3wp89ax43smmb6b77gral72izpbw5wkblphm"; depends=[signal]; }; sgpv = derive2 { name="sgpv"; version="1.1.0"; sha256="0w0slnnw239a34c0h7xr76c4m0rfwl0hq61g9n12vzxd6lfh3gqz"; depends=[]; }; sgr = derive2 { name="sgr"; version="1.3.1"; sha256="0m7rl3yii6zz4p21aiaifj1ram6gi6x5kywpyx9yjan79180q8h7"; depends=[MASS]; }; + sgs = derive2 { name="sgs"; version="0.1.0"; sha256="0j1lcq8h4zz5786fmybm94fpb7s1dm6qjb8s9nqrpj76nblxkr0x"; depends=[caret faux MASS Matrix Rcpp RcppArmadillo Rlab SLOPE]; }; sgsR = derive2 { name="sgsR"; version="1.4.2"; sha256="099nbv60nghwxh32s1fljqj2b7pap38nxrq5k5vi9v0djvx5sz98"; depends=[BalancedSampling clhs dplyr ggplot2 SamplingBigData sf spatstat_geom terra tidyr]; }; sgstar = derive2 { name="sgstar"; version="0.1.2"; sha256="0b3bw10lf5h4kgg3c0s3lxsafaffhn8gc9kxmg7bg35lbxv0r1vn"; depends=[dplyr ggplot2 tidyr]; }; sgt = derive2 { name="sgt"; version="2.0"; sha256="0qb3maj5idwafs40fpdfrwzkadnh5yg8fvfzfs51p9yy69kbmlkx"; depends=[numDeriv optimx]; }; @@ -16801,10 +17012,10 @@ in with self; { shapefiles = derive2 { name="shapefiles"; version="0.7.2"; sha256="03sdcxbah05x0j6cpygx3ivkzrdlz2c0frxi30cinb05q6a41yjb"; depends=[foreign]; }; shapes = derive2 { name="shapes"; version="1.2.7"; sha256="155q6asc9202f85snyjaxhm8qpj7swgzhg95sisjy506gvcb6c8z"; depends=[MASS minpack_lm rgl scatterplot3d]; }; shapper = derive2 { name="shapper"; version="0.1.3"; sha256="1jaj9j894md45611gdrz05n0kfakawf7vlcc3zxhwdh3f7kwz4lp"; depends=[DALEX ggplot2 reticulate]; }; - shapr = derive2 { name="shapr"; version="0.2.1"; sha256="1kl9iyrplhribksbfg5kr21kpkhsyhcximdvqck8xady3f3lpdgk"; depends=[condMVNorm data_table Matrix mvnfast Rcpp RcppArmadillo]; }; - shapviz = derive2 { name="shapviz"; version="0.6.0"; sha256="0shl1vk1zqrgj127zw48330b8ldghaknjr32j34a2lkyhvr8y1f0"; depends=[ggfittext gggenes ggplot2 ggrepel rlang xgboost]; }; + shapr = derive2 { name="shapr"; version="0.2.2"; sha256="0c8vivr1ia7x4jvdsffv06nl2yahxx38r5xbws5cdkalhbhlwv4h"; depends=[condMVNorm data_table Matrix mvnfast Rcpp RcppArmadillo]; }; + shapviz = derive2 { name="shapviz"; version="0.8.0"; sha256="1l75dxislnhdix99v4pi7kkirl7bmlvvi24xciinflnii80n0ngp"; depends=[ggfittext gggenes ggplot2 ggrepel patchwork rlang xgboost]; }; shar = derive2 { name="shar"; version="2.0.3"; sha256="09m3wg3wk2k2xnf3jip1irmjp59i7f2q70xwrz1j2macm6x0pa1m"; depends=[classInt spatstat_explore spatstat_geom spatstat_model spatstat_random terra]; }; - sharp = derive2 { name="sharp"; version="1.3.0"; sha256="1fnrdgja2yrhcjlgh1yrp5sqy9806fdpm630b0f2c4qhv6jbk9px"; depends=[beepr fake glassoFast glmnet huge igraph impute MASS mclust randomcoloR Rdpack withr]; }; + sharp = derive2 { name="sharp"; version="1.4.0"; sha256="16jclpxw8li21qi7j6bilc278fcrnipvd7lprqzjjzyw743x0rn0"; depends=[abind beepr fake glassoFast glmnet igraph lavaan mclust Rdpack regsem withr]; }; sharpData = derive2 { name="sharpData"; version="1.4"; sha256="1pnza52wqczjds4vp2fy9ky41y7lyj9ywam11nsr0mpv63jglnc5"; depends=[KernSmooth quadprog]; }; sharpPen = derive2 { name="sharpPen"; version="1.8"; sha256="11pvah41gi3xhb1n30k8ql28m3f47nnsd37z3mcjs0pv1lbacps2"; depends=[glmnet KernSmooth MASS Matrix np]; }; sharpeRratio = derive2 { name="sharpeRratio"; version="1.4.3"; sha256="0ndqckz7pi099yynzfwzcbz9jcz93bb9jcd2a4px2sjbagfmx7ag"; depends=[ghyp Rcpp]; }; @@ -16821,15 +17032,17 @@ in with self; { shiny = derive2 { name="shiny"; version="1.7.4"; sha256="1dd49mhnkkb5gwzry5r5xdgl9k9afm73ygwb4icqyfq1fmrxvz5v"; depends=[bslib cachem commonmark crayon ellipsis fastmap fontawesome glue htmltools httpuv jsonlite later lifecycle mime promises R6 rlang sourcetools withr xtable]; }; shiny_benchmark = derive2 { name="shiny.benchmark"; version="0.1.1"; sha256="14k51vhd3gngdpg67kn9gsd6i47sn9vkxx1qni139jlza7g9n0jx"; depends=[dplyr fs ggplot2 glue jsonlite progress renv shinytest2 stringr testthat]; }; shiny_blueprint = derive2 { name="shiny.blueprint"; version="0.2.0"; sha256="1g0c0iqp5yx24yzzxjnh7yjflx0k5pgkz6p415ml39pyczgq7107"; depends=[checkmate htmltools shiny shiny_react]; }; + shiny_exe = derive2 { name="shiny.exe"; version="0.2.0"; sha256="0657ywbnkg3k67321v9rkmfqqrkn89qzyidri0gfhs53c96yrijm"; depends=[]; }; shiny_fluent = derive2 { name="shiny.fluent"; version="0.3.0"; sha256="14cqa2czg3b60cxb8v4kycgk74cgdg9y8pg76mglnjv6rksmvwkl"; depends=[htmltools jsonlite rlang shiny shiny_react]; }; shiny_i18n = derive2 { name="shiny.i18n"; version="0.3.0"; sha256="0kcdvan8ds1kdqdxk6yvqpxlxv6xj4nxr8mp1qns3fzklyf4n4gy"; depends=[glue jsonlite R6 rstudioapi shiny stringr yaml]; }; shiny_info = derive2 { name="shiny.info"; version="0.2.0"; sha256="162wvb02z5h1y7xgsyl6wv88zlfmbm1jlnz48f56fyybs54baw41"; depends=[git2r glue shiny]; }; shiny_pwa = derive2 { name="shiny.pwa"; version="0.2.1"; sha256="120wqqy7fh7nm2bib3dq02a92jb3lykkl7qayiw6bnax8sdr18yw"; depends=[htmltools readr shiny urltools]; }; shiny_react = derive2 { name="shiny.react"; version="0.3.0"; sha256="0s4v2k0x04qcpjsb44c3rhgkzh0004r4hga3dkghcpzkgz6pfx2h"; depends=[glue htmltools jsonlite logger purrr rlang shiny]; }; shiny_reglog = derive2 { name="shiny.reglog"; version="0.5.2"; sha256="018dnnisidmn799api7kgwknvm3ka2sk1vvq2wcx65acqc450i18"; depends=[dplyr lifecycle lubridate R6 scrypt shiny shinyjs stringi uuid]; }; - shiny_router = derive2 { name="shiny.router"; version="0.3.0"; sha256="1rlmpxly9wy88z6d15hdxwd5q9pv7x9kknc4g62rcq2iy7pycsq2"; depends=[glue htmltools shiny]; }; + shiny_router = derive2 { name="shiny.router"; version="0.3.1"; sha256="1zg8cdxmw620i1iv7jrghd768gw7iv52hi6lx79xvnfjz8w4si3x"; depends=[glue htmltools rlang shiny]; }; shiny_semantic = derive2 { name="shiny.semantic"; version="0.4.3"; sha256="124bxgbbzx4xkzxqzr16brqdm12ra0pvx1qhqkvp8alvjm0s54vg"; depends=[glue htmltools htmlwidgets jsonlite magrittr purrr R6 shiny]; }; shiny_tailwind = derive2 { name="shiny.tailwind"; version="0.2.2"; sha256="12z6cnir7gyh01pw2l2wmsx1kw4yjh7i4p6afr05mqik9kfiljw2"; depends=[htmltools shiny]; }; + shiny_telemetry = derive2 { name="shiny.telemetry"; version="0.1.0"; sha256="10iwpj0pfhf6sq9fw7vr33f94w7sz2x1v4l7j5g8iqixhcq2953d"; depends=[checkmate digest dplyr glue httr2 jsonlite logger lubridate odbc purrr R6 rlang RSQLite shiny tidyr]; }; shiny_worker = derive2 { name="shiny.worker"; version="0.0.1"; sha256="1l30dx46s3q1x9nd42r6dracd3lqkjk80r9jyjqy8lmdsq48300i"; depends=[future R6 shiny]; }; shinyAce = derive2 { name="shinyAce"; version="0.4.2"; sha256="12mqvdh6rxsr61pc3pzla95r5f4l7xagjs2rcdr7c2lbqyxpx6aa"; depends=[jsonlite shiny]; }; shinyBS = derive2 { name="shinyBS"; version="0.61.1"; sha256="0h51685a9qll4agayldjyryi60ih969219ibg071slv0613p5v8a"; depends=[htmltools shiny]; }; @@ -16922,18 +17135,18 @@ in with self; { shock = derive2 { name="shock"; version="1.0"; sha256="11m52al591xjznl62q1waxsg5m1a1afmd0yqcc5zsjlrplykg4lp"; depends=[capushe GGMselect glasso igraph mvtnorm]; }; shopifyadsR = derive2 { name="shopifyadsR"; version="0.1.0"; sha256="0vd8md4w4v05l9d5v7kx21kw3rkbkx8iqf4da44x95kfnnxiqjcx"; depends=[jsonlite]; }; shopifyr = derive2 { name="shopifyr"; version="1.0.0"; sha256="05hih1v5vvr7vmwarizsdx8517g74s96fdsz3klcz3g12idx1nqn"; depends=[curl jsonlite R6]; }; - shoredate = derive2 { name="shoredate"; version="1.0.1"; sha256="0h34g4wpyrilli9c9qlyg0f2bc505nsr9v8mngsviviak5vymwx4"; depends=[ggplot2 ggrepel ggridges ggsn scales sf terra]; }; + shoredate = derive2 { name="shoredate"; version="1.0.2"; sha256="1kcqphgy1bjgr6yk1l0ng6d70rif0rlmwv0smgdisvpsbfjj7fdp"; depends=[ggplot2 ggrepel ggridges ggspatial scales sf terra]; }; shortcuts = derive2 { name="shortcuts"; version="1.4.0"; sha256="0y77napfz1v3s667cmyn8357xg5lncbw1hc3hm5kra6nalhq1jps"; depends=[rstudioapi]; }; shorts = derive2 { name="shorts"; version="2.4.0"; sha256="00790yv8h3z0m8mf2v6vyy9cjz08r5pjw2zxnhf8ic4qandysxd9"; depends=[ggplot2 LambertW minpack_lm purrr tidyr]; }; shotGroups = derive2 { name="shotGroups"; version="0.8.2"; sha256="0m3n3ja6ny45rdd13s9f7nm1ml3p3y7nisbhfg0fj369wym95r1p"; depends=[boot coin CompQuadForm KernSmooth robustbase]; }; showimage = derive2 { name="showimage"; version="1.0.0"; sha256="1c0x3iqjdjsz3cdhc02b3qm2pwxjr1q2k87jwvxj9lnzzw81f1pl"; depends=[png]; }; - showtext = derive2 { name="showtext"; version="0.9-5"; sha256="1larnqxn9nanbqiadm35ah5hh89xrzm4fdj9pfc93zzzhlfrvhb3"; depends=[showtextdb sysfonts]; }; + showtext = derive2 { name="showtext"; version="0.9-6"; sha256="0c4cssqk4s27pxfyb7fii97zhy4awzapj7bx9zkbki4va75mkjhf"; depends=[showtextdb sysfonts]; }; showtextdb = derive2 { name="showtextdb"; version="3.0"; sha256="0hlnc3fhgrdkd46n7hb6id0gg1v0bf8s4679nrr7rchyp455szq2"; depends=[sysfonts]; }; shp2graph = derive2 { name="shp2graph"; version="0-5"; sha256="1l9mg98hkb0bvr5dzd2p26g8mw5hqjxrym2gmbm10kyapvccfk56"; depends=[igraph maptools sp]; }; shrink = derive2 { name="shrink"; version="1.2.2"; sha256="0d80a0qqrsb9ybzqvg3m6a9r16ky7hqchq0hjvj8ipk430mmxdjm"; depends=[MASS mfp rms survival]; }; shrinkDSM = derive2 { name="shrinkDSM"; version="0.2.0"; sha256="0vl3cl9njl0irz9hsli7xkf49jawkywww91j5gxlmz5vdrxnwz9c"; depends=[coda Rcpp RcppArmadillo RcppProgress shrinkTVP stochvol]; }; shrinkTVP = derive2 { name="shrinkTVP"; version="2.0.6"; sha256="1p9s4n3dw95ghcma71ik5zidqk54cbsd30csnbqp2w377241lxd3"; depends=[coda GIGrvg Rcpp RcppArmadillo RcppProgress stochvol zoo]; }; - shroomDK = derive2 { name="shroomDK"; version="0.1.1"; sha256="1w1zhrr2jygys2slnnlmdh7py6rfs485nhdr3h9r964daggxb42q"; depends=[httr jsonlite]; }; + shroomDK = derive2 { name="shroomDK"; version="0.2.0"; sha256="1kan97jfizprx3zrsdhp59s4j5dcjj4rqx7na5d7qspk7gc7g08p"; depends=[httr jsonlite]; }; shuffle = derive2 { name="shuffle"; version="1.0.1"; sha256="0aqb11h340picx7z2jg3k46l3pr6fkknlpyzc0z89hhrc90pss48"; depends=[]; }; shuffleCI = derive2 { name="shuffleCI"; version="0.1.0"; sha256="1n9k28m1fcnw1my9a7v0gy9waygd48lab45vj9k2wwijbc325zai"; depends=[plotrix]; }; shutterplot = derive2 { name="shutterplot"; version="0.1.0"; sha256="129jv20m0dinb07lwiz9fxv4z7sxshcmjab2g0p5vrv8jlp9a0yv"; depends=[]; }; @@ -16947,9 +17160,10 @@ in with self; { sift = derive2 { name="sift"; version="0.1.0"; sha256="030vv2rha5d20045bwsp6ihdcgiw9glnchyahpzwym3m6fnkg0y5"; depends=[cpp11 dplyr glue pastecs purrr rlang tibble tidyr tidyselect]; }; sig = derive2 { name="sig"; version="0.0-6"; sha256="02narc84by24rldna6qi8vyygxfarhbaddv1kdmb1ywhbsq86597"; depends=[]; }; sigInt = derive2 { name="sigInt"; version="0.2.0"; sha256="1y3qbfsynssam05q4947zqd0dkrpcnq5pla409i3xy511wv9702d"; depends=[Formula MASS maxLik pbivnorm randomForest stringr xtable]; }; + sigQC = derive2 { name="sigQC"; version="0.1.23"; sha256="0fpci6l0h6047qq7igwmm38rma768l706xfmfdfn1qqgkm5sv0x8"; depends=[biclust circlize class cluster ComplexHeatmap fmsb gplots gridGraphics GSVA KernSmooth lattice MASS mclust moments nnet]; }; sigclust = derive2 { name="sigclust"; version="1.1.0.1"; sha256="1q3jdalm7cbsl78gssl3jsifh56wyczrlx2ya4p74r4fb6sv9kga"; depends=[]; }; sigmajs = derive2 { name="sigmajs"; version="0.1.5"; sha256="1d26llpgnj687b8rwgbyhw88zakp334n4a9gabf72qwrg4awm1v5"; depends=[crosstalk dplyr htmltools htmlwidgets igraph jsonlite magrittr purrr scales shiny]; }; - sigminer = derive2 { name="sigminer"; version="2.1.9"; sha256="1pyvyn41xfvdsaij5qz70jr1b04s9kqzg8nx0ifqakdlpg82hbx9"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; + sigminer = derive2 { name="sigminer"; version="2.2.0"; sha256="0bgpdijxv2922kgfk885rganl5yn13g0f9h0mmlzvsvhbhav9mdm"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; sigmoid = derive2 { name="sigmoid"; version="1.4.0"; sha256="067ygikaaniikig1ypd6ry187981xar7i539917zf0avszshisxq"; depends=[]; }; signal = derive2 { name="signal"; version="0.7-7"; sha256="0qaf39vfmhn3d0bdjqd805ayfkaj48dkmf5dqd47bpk7dp21b837"; depends=[MASS]; }; signalHsmm = derive2 { name="signalHsmm"; version="1.5"; sha256="1d4v6cbvcbi8pb5zmn58s01h3jb0kv7yr7qvcnx4p2v82knvhik7"; depends=[Rcpp seqinr shiny]; }; @@ -16994,7 +17208,7 @@ in with self; { simex = derive2 { name="simex"; version="1.8"; sha256="1849wayygyqv0fh1i2qva7ggh2yah2nn0sgbcy9pldxrjq8q9iw0"; depends=[]; }; simexaft = derive2 { name="simexaft"; version="1.0.7.1"; sha256="0n3n2g07pnpcqhbrjf78lbvqvc136g7jxlx6q27vnk96kwizh3f1"; depends=[mvtnorm survival]; }; simfam = derive2 { name="simfam"; version="1.1.6"; sha256="0fvg9fwq6j8qraxxr4686i1vp7wv2z52qq61i14dh455i85picc2"; depends=[Rcpp tibble]; }; - simfinapi = derive2 { name="simfinapi"; version="0.2.3"; sha256="1xzbcbl93g1hfvgbnglmn6klsrm9bblcji0qj78p5ia51vkamxmc"; depends=[bit64 checkmate data_table future_apply httr memoise progressr RcppSimdJson]; }; + simfinapi = derive2 { name="simfinapi"; version="0.2.4"; sha256="1lkqk3pc00hplgr568d34p5cy3zwcbl4za5pfqbfl2ai5ldnchc9"; depends=[bit64 checkmate data_table future_apply httr memoise progressr RcppSimdJson]; }; simfit = derive2 { name="simfit"; version="0.1.0"; sha256="0wlkkpxvpxd17y2kgfwjyjlrwj48z27mhss8r7yp4410l0a2llgy"; depends=[ggplot2 magrittr]; }; simglm = derive2 { name="simglm"; version="0.8.9"; sha256="0spvr8bmdqg97y1qklr8c6svgwsdwa5haar4sbsnvpnrq5fb2baw"; depends=[broom dplyr future_apply purrr rlang]; }; simgof = derive2 { name="simgof"; version="1.0.2"; sha256="05d7im59i193f266kqy4lr37dw3v20j9niizhj9w8z1qlfqfqsrk"; depends=[ddst]; }; @@ -17008,6 +17222,7 @@ in with self; { simode = derive2 { name="simode"; version="1.2.0"; sha256="0wlnd01xfdqvjfvmkhkj6nvkrnv5ghjv4md5nhaqsjc8bycawyl0"; depends=[deSolve pracma quadprog]; }; simodels = derive2 { name="simodels"; version="0.0.5"; sha256="149490vgw0549x5zym28kyxgyjhjl2wx7rcak9gabkznwjjrhqk5"; depends=[dplyr geodist od rlang sf]; }; simphony = derive2 { name="simphony"; version="1.0.3"; sha256="0cpp6gga0p80yd7ir1qsgnv236sp35xybp7i0h104yzhnwgcqnkb"; depends=[data_table foreach]; }; + simplace = derive2 { name="simplace"; version="5.0.11"; sha256="0navn13i5nh61vax758q612d8acwawnm5gp3nhsr79gxd4y069rz"; depends=[rJava]; }; simplanonym = derive2 { name="simplanonym"; version="0.1.0"; sha256="1zwc73qbf0xx0ca1pgk3hqdmf9b6ihlwflb2fq31lhk3ngka8kc6"; depends=[dplyr forcats tidyselect]; }; simpleCache = derive2 { name="simpleCache"; version="0.4.2"; sha256="0zayq4n8cc0xgszckjvvf55ygy8hwywv161pp8pqi2k4z91rq4lz"; depends=[]; }; simpleFDR = derive2 { name="simpleFDR"; version="1.1"; sha256="09w7l8pb6kibzifwyqcgshlxjq2gn6s642i78939q00q0m9qvdbk"; depends=[dplyr tidyr]; }; @@ -17022,16 +17237,17 @@ in with self; { simplegraph = derive2 { name="simplegraph"; version="1.0.0"; sha256="1gcpbljp1fgaprxnmq23izf1h2x3p5dnxlylwqsnlcj50bvm46gq"; depends=[]; }; simplegraphdb = derive2 { name="simplegraphdb"; version="2021.03.10"; sha256="0573hrv23nimmf3d8dgdynii79h84a3mfr4xxk3cggxhsxpfmb2i"; depends=[DBI rjson RSQLite]; }; simplermarkdown = derive2 { name="simplermarkdown"; version="0.0.6"; sha256="0lffwsrhsdqcqhklh24v0y0x6w4vq9jch93m330kfdv2amab1l06"; depends=[rjson]; }; - simplevis = derive2 { name="simplevis"; version="7.0.0"; sha256="1c2hkn7f20vvn0nc6w4p5dwcbg4dv883rc1a7hwfahjzgi4w7j78"; depends=[dplyr ggplot2 htmlwidgets leafem leaflet leafpop magrittr rlang scales sf shiny snakecase stars stringr tidyr tidyselect viridis]; }; + simplevis = derive2 { name="simplevis"; version="7.1.0"; sha256="1x2lignyqyd9l7sq1gxgb98jav6r3pvai3hgqzpwn982lr8x2k9b"; depends=[dplyr ggplot2 htmlwidgets leafem leaflet leafpop magrittr rlang scales sf shiny snakecase stars stringr tidyr tidyselect viridis]; }; simplexreg = derive2 { name="simplexreg"; version="1.3"; sha256="1zkh00xbddhgz0qn0a5pj12n0hpx4f5kihpfj71x92pmxpzglcxh"; depends=[Formula plotrix]; }; simplextree = derive2 { name="simplextree"; version="1.0.1"; sha256="18jvzcz4fdsi17j7qdqpjvx6zygvlcvpziikb8qxskaib5180l08"; depends=[magrittr Rcpp]; }; simplifyNet = derive2 { name="simplifyNet"; version="0.0.1"; sha256="04iv1alkd85lwwyf8k6iwsj9fbxl6smsjm2b34z91za70n0rsw5q"; depends=[dplyr igraph Matrix sanic]; }; + simpr = derive2 { name="simpr"; version="0.2.6"; sha256="0r85hphhkk624p671r3vp74j0v6y9qj2pwpm5d1nv81pdcdwk0zi"; depends=[broom dplyr furrr generics lifecycle magrittr purrr rlang tibble tidyr tidyselect]; }; simputation = derive2 { name="simputation"; version="0.2.8"; sha256="02l7j2s74mjd4vgly4nnf2w7as9m3m6qifa292r29iaw12l0zj81"; depends=[glmnet gower MASS missForest norm randomForest rpart VIM]; }; - simr = derive2 { name="simr"; version="1.0.6"; sha256="1q8ip54c5pc7pjf8127jpk56nr3f8rmwqdcrr84faj4lfbr27wqb"; depends=[binom car iterators lme4 lmerTest pbkrtest plotrix plyr RLRsim stringr]; }; + simr = derive2 { name="simr"; version="1.0.7"; sha256="1rfnhyqvdazvar7r1ml71lskh1hdk3yfzv5jlcz18wzffscgkgmb"; depends=[binom car iterators lme4 lmerTest pbkrtest plotrix plyr RLRsim stringr]; }; simrec = derive2 { name="simrec"; version="1.0.0"; sha256="17zzbzgdisp5qh0vlbmkjf6a3axnpwj2kw03wymfbb3z557pbxlr"; depends=[]; }; simrel = derive2 { name="simrel"; version="2.1.0"; sha256="1knn8kw9m232agm4b3b0fc132frv5i7k8gxvmrcb1pnz62gsmg04"; depends=[FrF2 ggplot2 gridExtra jsonlite magrittr miniUI purrr reshape2 rlang rstudioapi scales sfsmisc shiny testthat tibble tidyr]; }; sims = derive2 { name="sims"; version="0.0.3"; sha256="0wsq8plbrmk4xrs8i3g3pqwp2xkhfh1pffva1bwyx44l1r5imzs2"; depends=[chk future_apply nlist yesno]; }; - simsalapar = derive2 { name="simsalapar"; version="1.0-11"; sha256="1vf97q42vicmz5w6szzhiw73sc3c7rqwxs1nv7ybp13fvvg52p24"; depends=[colorspace gridBase sfsmisc]; }; + simsalapar = derive2 { name="simsalapar"; version="1.0-12"; sha256="0aac4mjx4pdfhy52jvr3v2d8hp20qglzfhrvqmrvvn5pcn2qmlh4"; depends=[colorspace gridBase sfsmisc]; }; simsem = derive2 { name="simsem"; version="0.5-16"; sha256="0scjb308pb8ivy5blbk1wj9d1yxcqknhvh95a3728crfq2xcqnh0"; depends=[lavaan]; }; simsl = derive2 { name="simsl"; version="0.2.1"; sha256="12dc9lcy11g1yynycvcqm62npq0v13bg6fnykb5m9ijwga4x51il"; depends=[mgcv]; }; simstandard = derive2 { name="simstandard"; version="0.6.3"; sha256="1l1vny3csrr7krfpn25rzysmwjfv6mclf51y3mq02cimcwq9fzcy"; depends=[lavaan magrittr mvtnorm purrr rlang tibble]; }; @@ -17072,16 +17288,15 @@ in with self; { sitools = derive2 { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; sitree = derive2 { name="sitree"; version="0.1-13"; sha256="0v0qbzdgh1lcg7m6b5vzfwy74hvj1b61c49lq8c4az740sf34sx6"; depends=[data_table ggplot2]; }; sitreeE = derive2 { name="sitreeE"; version="0.0-8"; sha256="0jwxca8y0nn1aqx4c6gikgf31nb4dll543m0akd4jmqx6fc450kd"; depends=[data_table sitree]; }; - sits = derive2 { name="sits"; version="1.3.0"; sha256="0l04a1mag3f6yf6qr1x38ma70j1immg0fzyk9mxq8fpw67lwycr2"; depends=[dplyr gdalUtilities lubridate magrittr purrr Rcpp RcppArmadillo rstac sf slider terra tibble tidyr torch yaml]; }; + sits = derive2 { name="sits"; version="1.4.0"; sha256="1885i9p09qwi6mkw01s6qw1k974lc6siff28dzmw7z1nq27mdmry"; depends=[dplyr gdalUtilities lubridate magrittr purrr Rcpp RcppArmadillo rstac sf slider terra tibble tidyr torch yaml]; }; sivs = derive2 { name="sivs"; version="0.2.9"; sha256="0g5gw2szsnm3k71zjw0174qnznr6abnyk2nh5afhyappki4yqaia"; depends=[doParallel foreach glmnet pROC varhandle]; }; sizeMat = derive2 { name="sizeMat"; version="1.1.2"; sha256="1vbndadsn80ddrg471vp1qxf0gan38w6dkjk1p2npvfb47wdjj2h"; depends=[MASS matrixStats MCMCpack]; }; sjPlot = derive2 { name="sjPlot"; version="2.8.14"; sha256="06m6najky8ydnn6y6f3fh1y7laxnqpzcbyy1cyqcgvfcyfia9qjf"; depends=[bayestestR datawizard dplyr ggeffects ggplot2 insight knitr MASS parameters performance purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; - sjSDM = derive2 { name="sjSDM"; version="1.0.4"; sha256="00f3wkz2cnafdxnj4xfmy8q95yf8k585sa8mbxnmx2jhmbrz079c"; depends=[abind checkmate cli crayon ggplot2 ggtern mathjaxr Metrics mgcv mvtnorm reticulate rstudioapi Ternary]; }; sjdbc = derive2 { name="sjdbc"; version="1.6.1"; sha256="0cz5qc5lsipd3nlkzj8j03xmpzxp52c3q5av8pr7fm3vsdclawfk"; depends=[rJava]; }; sjlabelled = derive2 { name="sjlabelled"; version="1.2.0"; sha256="1va86q5wddyvqgdpy8d0an2c7v1qbb4hpn0ai6y1v5v1ff87w73k"; depends=[datawizard insight]; }; sjmisc = derive2 { name="sjmisc"; version="2.8.9"; sha256="1gzkq95ckxr0vhrzggflzli9hs7zr8c0yym9zn1wf74yrr0mgc3q"; depends=[dplyr insight magrittr purrr rlang sjlabelled tidyselect]; }; sjstats = derive2 { name="sjstats"; version="0.18.2"; sha256="0a1y6bqyvgs0avzasr8g6vwcxcnj4d9g0rfz2qiznwadpjzqw66h"; depends=[bayestestR broom datawizard dplyr effectsize emmeans insight lme4 magrittr MASS modelr parameters performance purrr rlang sjlabelled sjmisc tidyr]; }; - sjtable2df = derive2 { name="sjtable2df"; version="0.0.2"; sha256="10h24yaikm8l3kkkj6yv430ybmgz0ydvxlv3smyyv5ww0c9qzmp1"; depends=[data_table kableExtra magrittr rlang rvest xml2]; }; + sjtable2df = derive2 { name="sjtable2df"; version="0.0.3"; sha256="1vb2wr122pfn6qald36mn1dkz6gygp81skl11halrwa7cvxwkl7z"; depends=[data_table kableExtra magrittr rlang rvest xml2]; }; skater = derive2 { name="skater"; version="0.1.2"; sha256="1hw6hk2v6jxhv86dzjpqnakkrbp2k7gayg2zffpyd2z8l4mpgmxd"; depends=[corrr dplyr kinship2 magrittr purrr readr rlang tibble tidyr]; }; skedastic = derive2 { name="skedastic"; version="2.0.1"; sha256="0faj5lv6axpg8ra5pa49j9ha41cmxynhf6fc7dn5ym2g0f497k9l"; depends=[bazar broom caret CompQuadForm inflection MASS Matrix mgcv osqp pracma quadprog quadprogXT Rdpack Rfast ROI ROI_plugin_qpoases slam]; }; skeletor = derive2 { name="skeletor"; version="1.0.4"; sha256="1jfbfbkjx8mdwamsrkhvcnyn470in702vgcyw3g2dbgs84gl29q8"; depends=[]; }; @@ -17094,7 +17309,7 @@ in with self; { skewlmm = derive2 { name="skewlmm"; version="1.0.0"; sha256="1z7rz520vmjqmnak2zgxnnj7yhg7k2phclx3ilvkwzn9v8pd224j"; depends=[dplyr furrr future ggplot2 ggrepel haven moments mvtnorm nlme numDeriv optimParallel purrr]; }; skewsamp = derive2 { name="skewsamp"; version="1.0.0"; sha256="1b41zjjnn7vphcrbvrvqx66jfd9fb8v22xmgql6wh26a2y81bman"; depends=[]; }; skewt = derive2 { name="skewt"; version="1.0"; sha256="1jaldnqgjzky2vr290vzpzdwsa5s92l977v6k2yhpzmmw4k4x3l7"; depends=[]; }; - skilljaR = derive2 { name="skilljaR"; version="0.0.1"; sha256="1qfb4irslbmidjq358bkhadr71armk4jps78xz5bm0kxbj2nljhq"; depends=[dplyr httr jsonlite magrittr purrr]; }; + skilljaR = derive2 { name="skilljaR"; version="0.1.0"; sha256="08x04n3jfif1y56ixd36fd116p8s8sphfkas6nigjl237p2lvib5"; depends=[dplyr httr jsonlite magrittr purrr]; }; skimr = derive2 { name="skimr"; version="2.1.5"; sha256="11w32vfwm6pz4cvmm60na6pjbyjvw2xq489ij5xqzx0n3pma7wq6"; depends=[cli dplyr knitr magrittr pillar purrr repr rlang stringr tibble tidyr tidyselect vctrs]; }; sklarsomega = derive2 { name="sklarsomega"; version="3.0-2"; sha256="027rx1x5hsn0qx7s6s2sqf13p49jbhi6g7w0fzfqf619p3fzkghg"; depends=[dfoptim extraDistr hash LaplacesDemon Matrix mcmcse numDeriv spam]; }; skm = derive2 { name="skm"; version="0.1.5.4"; sha256="06g3bdncq2r56d8k3dr87gqnibypbsps0gj4jxkw9q1sq1yaff3v"; depends=[data_table magrittr plyr Rcpp RcppArmadillo RcppParallel]; }; @@ -17128,9 +17343,9 @@ in with self; { slouch = derive2 { name="slouch"; version="2.1.4"; sha256="09ffx657hs913prv0rifhsz60h39lk0h4z28myx6yzxcfdk4f48d"; depends=[ape crayon memoise]; }; slowraker = derive2 { name="slowraker"; version="0.1.1"; sha256="0glc3ldvbqkvzfvhs4s5mzx1kfz05px4k7rx5jfp9dm9d0gfpvsx"; depends=[NLP openNLP SnowballC]; }; slp = derive2 { name="slp"; version="1.0-5"; sha256="0i9iv0s1wdp9cyzr8qixh6c7qvrj025vll13gyf8dfbidrp6hryl"; depends=[mgcv]; }; - slurmR = derive2 { name="slurmR"; version="0.5-2"; sha256="1lnj5h7d5hnhmas6dnizzawjqlxgi9qxfjbb2b5janm9r488yvkg"; depends=[]; }; + slurmR = derive2 { name="slurmR"; version="0.5-3"; sha256="1vvzqgyhqp29k1vqd99r9fdn6caidzkph2f3fw38334623103v6n"; depends=[]; }; sm = derive2 { name="sm"; version="2.2-5.7.1"; sha256="0mql7rlm8wkdwmx1lv7pscdk9ibvsdpfdv8bpaz1hv2gn4pc637a"; depends=[]; }; - smaa = derive2 { name="smaa"; version="0.3-1"; sha256="13qf495glfz6r75kfdplr1x6fqmys961pzbgv96lw62lby5d2qgp"; depends=[]; }; + smaa = derive2 { name="smaa"; version="0.3-2"; sha256="0cv6xa6miy45pj0lskg70bq7bmwxdprwjl51ghlxgifkv1qdxqhc"; depends=[]; }; smacof = derive2 { name="smacof"; version="2.1-5"; sha256="1i9a3637m943sw6s0hx2b99kny0sv8niywqi9l12pjxx9flnj0zv"; depends=[candisc colorspace doParallel e1071 ellipse foreach Hmisc MASS nnls plotrix polynom weights wordcloud]; }; smacpod = derive2 { name="smacpod"; version="2.5"; sha256="0br9ahix3q2qv06aj8jr2828ysj0waik6za42ahd9b8hv7chrhad"; depends=[abind pbapply plotrix smerc sp spatstat_explore spatstat_geom spatstat_random]; }; smallarea = derive2 { name="smallarea"; version="0.1"; sha256="0jcv0xbh8v4g6zxxs4yyd0divwzk9d2w7g01r4s65khxvy3av7yx"; depends=[MASS]; }; @@ -17148,7 +17363,7 @@ in with self; { smcure = derive2 { name="smcure"; version="2.1"; sha256="0377dj6wvny2y44phsf7177ivn70a55v316skwf02n03ghqx73k9"; depends=[survival]; }; smd = derive2 { name="smd"; version="0.6.6"; sha256="1nvlka2prqh1hcj4ngpj2c2gmfryziijqwjyfy9fmq78skiq0jij"; depends=[MASS]; }; smdata = derive2 { name="smdata"; version="1.2"; sha256="1p26b46kg4hmhs2fl9h9vchar00llqv58ylx438bjgzz4f229qvr"; depends=[]; }; - smdocker = derive2 { name="smdocker"; version="0.1.2"; sha256="1af2mabw9yx6pb8lqs6n0f12zbiac8wfm1nxy0xwchpmy80md605"; depends=[jsonlite paws_compute paws_developer_tools paws_machine_learning paws_management paws_security_identity paws_storage zip]; }; + smdocker = derive2 { name="smdocker"; version="0.1.3"; sha256="0l9d3schxzb047p9xlxb3a5f7h116gyr8hp592fmid1ly6bk7kh7"; depends=[jsonlite paws_compute paws_developer_tools paws_machine_learning paws_management paws_security_identity paws_storage uuid zip]; }; smerc = derive2 { name="smerc"; version="1.7.2"; sha256="1j9gahdkhnlx2gl1j25l4f7qfpswv7fc7frfbzknnr08br2xvwzd"; depends=[MESS pbapply randtoolbox Rcpp RcppProgress sp]; }; smfishHmrf = derive2 { name="smfishHmrf"; version="0.1"; sha256="1k6mpyp11zv5rc3k98baymr903p2pf424nf9xng20q1li8s8y2ab"; depends=[fs pracma Rdpack]; }; smfsb = derive2 { name="smfsb"; version="1.3"; sha256="1328w7zpwd3nam6ha4bh14g919jjl87v323ijmbp1j71gc64nn2i"; depends=[abind]; }; @@ -17187,7 +17402,7 @@ in with self; { snahelper = derive2 { name="snahelper"; version="1.4.1"; sha256="1krmaynhvbbdvyy55h2b1h9w9pw1gjkd2ha4prhcm836rmvyb6av"; depends=[colourpicker DT formatR ggplot2 ggraph graphlayouts igraph miniUI rstudioapi shiny]; }; snakecase = derive2 { name="snakecase"; version="0.11.0"; sha256="1ky1x2cp5rd0ffd9m1fji9sq4z4jsrpxzg30brw8bb4ihfjj114r"; depends=[stringi stringr]; }; snap = derive2 { name="snap"; version="1.1.0"; sha256="02bvs1r72y59p33a7yj1rqw75h08pvl794hdvvm15jzq1hy6j0ra"; depends=[CORElearn dbscan dplyr forcats ggplot2 keras purrr readr reticulate stringr tensorflow tictoc]; }; - snapKrig = derive2 { name="snapKrig"; version="0.0.1"; sha256="1bnj83is5jrqr9fbcfsvv6x8xb01yy96q37w3zcy416ijmjms1qc"; depends=[]; }; + snapKrig = derive2 { name="snapKrig"; version="0.0.2"; sha256="1rgfz1kxlgp3an4cd37mhjn47hkjms0c6m2469wcbcw0xqjii9ld"; depends=[]; }; snapchatadsR = derive2 { name="snapchatadsR"; version="0.1.0"; sha256="0h1wiwycrafh1wzmdw8dm0zw1xpzvj7w0943kh2bx8wpp7ara2vy"; depends=[jsonlite]; }; snapshot = derive2 { name="snapshot"; version="0.1.2"; sha256="0cif1ybxxjpyp3spnh98qpyw1i5sgi1jlafcbcldbqhsdzfz4q10"; depends=[]; }; snem = derive2 { name="snem"; version="0.1.1"; sha256="1r8l7cs1y82fh7bdfl18ilw4fria1cabghqddnfr34vfp85cndk9"; depends=[mvtnorm]; }; @@ -17201,9 +17416,11 @@ in with self; { snowfall = derive2 { name="snowfall"; version="1.84-6.2"; sha256="0frmasv04wd47h04zbwaryhiyxllarf3ggpa39p5qicjp6r7lilv"; depends=[snow]; }; snowflakes = derive2 { name="snowflakes"; version="1.0.0"; sha256="0adna9jfs0wv4dhyjczxhq7c0ldjfai07p1q9119avxyilv9x0vi"; depends=[]; }; snpReady = derive2 { name="snpReady"; version="0.9.6"; sha256="1r96j8zh84dn7qh3zgl0p0v3a80hx2wd3c4jgjlr43hzl7yglpqr"; depends=[impute Matrix matrixcalc rgl stringr]; }; + snplinkage = derive2 { name="snplinkage"; version="1.0.0"; sha256="112wg2gnr4ikj916nb71sm39g41ls05d4j56hhml9hfnkiv76x5p"; depends=[gdsfmt ggplot2 gtable GWASTools magrittr]; }; snplist = derive2 { name="snplist"; version="0.18.2"; sha256="1sa2s3br4agx920jpr250iih61p99v500nh0c1w99w0846g9908c"; depends=[biomaRt DBI R_utils Rcpp RSQLite]; }; snpsettest = derive2 { name="snpsettest"; version="0.1.1"; sha256="0vfm09bff7l7z36lzwp0ndnlb230f0kg6dlbjlpk028xd1iy4if1"; depends=[data_table gaston Rcpp RcppArmadillo]; }; sns = derive2 { name="sns"; version="1.2.2"; sha256="1zb0s89lp2049i7l919dpd7bd396y9s6v8913qz56fvsq95sbvcn"; depends=[coda mvtnorm numDeriv]; }; + snvecR = derive2 { name="snvecR"; version="3.7.5"; sha256="0hbzrqp7f014ppccdm8zvqdryp18i9qcmbwn4pnl0hqy6yp84yn5"; depends=[cli curl deSolve dplyr glue lubridate pracma purrr readr rlang tibble tidyr tidyselect withr]; }; sobolnp = derive2 { name="sobolnp"; version="0.1.0"; sha256="00rmigjyd3fsmhrhbvjzrfsl4ir0xpfr4xbgjws6vkx2rmcqnq1s"; depends=[minqa np pbmcapply]; }; soc_ca = derive2 { name="soc.ca"; version="0.8.0"; sha256="16l0synym91b7djgzdcz43dnvw44fkyxky9gm37ixbxzq1czdp9w"; depends=[dplyr ellipse FactoMineR flextable forcats ggplot2 ggrepel gridExtra htmlTable magrittr Matrix purrr RColorBrewer reshape2 rlang shiny stringr tibble tidyr]; }; socceR = derive2 { name="socceR"; version="0.1.1"; sha256="1vd0r3vixavg1br2q3kfn3nvl7dw854vkcfwcvyw411k84ivb13y"; depends=[Rcpp]; }; @@ -17212,20 +17429,21 @@ in with self; { socialmixr = derive2 { name="socialmixr"; version="0.2.0"; sha256="0mdsj0dqgn1wckxm9imkhswmbcy391kfqwv42yp1g9y1rcdkvjp4"; depends=[countrycode curl data_table fields httr jsonlite lubridate oai stringr wpp2017 xml2]; }; socialranking = derive2 { name="socialranking"; version="1.0.0"; sha256="1zq9dlmz7ygnp3cmfkdjmkq2c7rw852d8i06v9j1jl1s67wm33s5"; depends=[Rdpack relations rlang]; }; socialrisk = derive2 { name="socialrisk"; version="0.5.1"; sha256="1v9hvrqwihfprs32pplxsv00myf0p5pa32601s8s826jss3fkx4w"; depends=[dplyr magrittr rlang stringr tidyr tidyselect]; }; - sociome = derive2 { name="sociome"; version="2.1.0"; sha256="0dh20mx3jbyy2bkrdz1w0sihdfhpfvc5p0i0x9q0azcpln51rv5k"; depends=[censusapi dplyr magrittr mice psych purrr rlang stringr tidycensus tidyr]; }; + sociome = derive2 { name="sociome"; version="2.2.1"; sha256="0s9ffh9g5ydjglvrc14zhp6im0dz5mq64yakby2myjx670mwwl9w"; depends=[dplyr magrittr mice psych purrr rlang stringr tidycensus tidyr]; }; socviz = derive2 { name="socviz"; version="1.2"; sha256="1294xwy26vshmaiw3pkx3f90j8g6fv64gygv88b7lnz6fhai1nq5"; depends=[dplyr fs magrittr rlang tibble]; }; sodavis = derive2 { name="sodavis"; version="1.2"; sha256="1jf5sml51qxlpgv5b1rvyig4dm4ijw2hpnk85zf790jp22xm64jw"; depends=[MASS mvtnorm nnet]; }; sodium = derive2 { name="sodium"; version="1.2.1"; sha256="1a03z2asvmalnmsn89lapzp8a4fr0qvzdv3xgin8pbqhjyb9hvpp"; depends=[]; }; sofa = derive2 { name="sofa"; version="0.4.0"; sha256="1w78f8pnx4vh6znpwwcy9k4j795zji4bv88mi6ihdv09ar7if7yv"; depends=[crul jsonlite mime R6]; }; softImpute = derive2 { name="softImpute"; version="1.4-1"; sha256="1v2a4d688ij5zcvkzpra9yx40xckdfnllnfnyq2450zf3n1kjk7a"; depends=[Matrix]; }; - softbib = derive2 { name="softbib"; version="0.0.1"; sha256="1nc8h9dlwwwv6bv499wxmrm3z7dkcwgwyif47s82s308j1h640ha"; depends=[bibtex checkmate renv rmarkdown]; }; + softbib = derive2 { name="softbib"; version="0.0.2"; sha256="0rhia0vx53lhmykf2rmnr9kbcvld35n2and1l3riqdfr6jrdg8pb"; depends=[bibtex checkmate renv rmarkdown]; }; softclassval = derive2 { name="softclassval"; version="1.0-20160527"; sha256="1f5qj5sajy3dg0mgss6f9w6v5a2prcypld9jcv457bd4n4a409kr"; depends=[arrayhelpers svUnit]; }; soilDB = derive2 { name="soilDB"; version="2.7.7"; sha256="17bahlm1p6mnvahs144pcss7x0x1hrm7f6xgwf4mn75h06dlfpmd"; depends=[aqp curl data_table DBI]; }; soilassessment = derive2 { name="soilassessment"; version="0.2.5"; sha256="1wpls6ipdripdd1fmfn3yil30ghcb1h6mrpax376gv48ndgf9q73"; depends=[arm caret Cubist deSolve e1071 FuzzyAHP googledrive Hmisc kernlab nnet png qrnn quantregForest randomForest ranger raster rpart soiltexture sp]; }; soilchemistry = derive2 { name="soilchemistry"; version="0.1.0"; sha256="1fkq5zpkcwh7ps2r79kc2pw7q2i4hjjnckx2f29l8064hswd9jc4"; depends=[]; }; + soilfoodwebs = derive2 { name="soilfoodwebs"; version="1.0.2"; sha256="09nc2ywxk8kl0akdwxz5zddrnqljvqpixjaz2bjkpxy0xj0qd82l"; depends=[deSolve diagram lpSolve quadprog rootSolve stringr]; }; soilhypfit = derive2 { name="soilhypfit"; version="0.1-7"; sha256="1ssz9w9ibw8mban0fq50j4lgr8vmkrsn8v9cpkg0wl28z1hqbhz3"; depends=[mgcv nloptr quadprog Rmpfr snowfall SoilHyP]; }; soilphysics = derive2 { name="soilphysics"; version="5.0"; sha256="1ijnqlb52c3vm6ydiginp0f82vkip0kbsvbd9yac3scrc5g1b5z3"; depends=[boot fields MASS rhandsontable shiny shinydashboard]; }; - soiltestcorr = derive2 { name="soiltestcorr"; version="2.1.2"; sha256="1yw3y655i9d7y18vcqyhh3yg3mc41bqb2ix9lbylzd83zp7g71c4"; depends=[AICcmodavg data_table dplyr ggplot2 ggpp minpack_lm modelr nlstools purrr rlang tidyr]; }; + soiltestcorr = derive2 { name="soiltestcorr"; version="2.2.0"; sha256="1c5w3w4nrxdy2cdch048kmb35jqm8rws0am31vgn263y1045shwd"; depends=[AICcmodavg data_table dplyr ggplot2 ggpp minpack_lm modelr nlraa nlstools purrr rlang smatr tidyr]; }; soiltexture = derive2 { name="soiltexture"; version="1.5.1"; sha256="1l9npvk910488qzd45ibc7ss557hnkb78lx1p6fs3nhl8sacgyxh"; depends=[MASS sp]; }; soilwater = derive2 { name="soilwater"; version="1.0.5"; sha256="11gal7hj73j82qx65krmzpmf0gpm41ph8hw70df46dbf4w23vvjn"; depends=[]; }; sokoban = derive2 { name="sokoban"; version="0.1.0"; sha256="07r2zv9rynvw06fpncrz3rsmkdy6z2pcvmm559bhs428kmnq2xib"; depends=[]; }; @@ -17240,7 +17458,8 @@ in with self; { som_nn = derive2 { name="som.nn"; version="1.1.0"; sha256="0mw2c2lqvdq9bhndpjyawjy43l4x7clcsx2350j45g7fnchhy602"; depends=[class hexbin kohonen som]; }; soma = derive2 { name="soma"; version="1.2.0"; sha256="05hm6yqh1d10kbgvy5j0cj2lvcnib4p9lmjcl32zxy1hazpagplq"; depends=[reportr]; }; someMTP = derive2 { name="someMTP"; version="1.4.1.1"; sha256="197ajnnp92qh807a55z0i9z8nw0vmf5vvr216nxjwa2l9kw8c84k"; depends=[]; }; - sommer = derive2 { name="sommer"; version="4.2.0.1"; sha256="1n3kaympigld34ymvqy05n265gs70yqhzp7pvyx3hjbkrg5i7j9j"; depends=[crayon lattice MASS Matrix Rcpp RcppArmadillo RcppProgress]; }; + sommer = derive2 { name="sommer"; version="4.3.0"; sha256="1liiip2r4cf7ls4lc0sq8gwsjcda86yymxvc7hbzqwbj3cy7y4kj"; depends=[crayon MASS Matrix Rcpp RcppArmadillo RcppProgress]; }; + somspace = derive2 { name="somspace"; version="1.2.4"; sha256="1268sj89cbkp2nm0i905s991a92w4aki93hxia2vqk6fdh200rdl"; depends=[data_table ggplot2 kohonen maps reshape2]; }; sonar = derive2 { name="sonar"; version="1.0.2"; sha256="1f0f5iqi3y9vnxyym14nm8dqxw0vcpnxmvvkx4sm612i4fclg1f9"; depends=[]; }; sonicLength = derive2 { name="sonicLength"; version="1.4.7"; sha256="1wvdcjk641kcmflda0mibqr519qbqgb26mgwibjhm6pzgvwpy2dg"; depends=[]; }; sonicscrewdriver = derive2 { name="sonicscrewdriver"; version="0.0.4"; sha256="0myn1arwswinhjksz0ijq8242f4c5l5phz2m6brd83avcpf707g6"; depends=[ggplot2 hms jsonlite mime seewave suncalc tuneR]; }; @@ -17251,14 +17470,14 @@ in with self; { sorocs = derive2 { name="sorocs"; version="0.1.0"; sha256="0gy23rldhnlz6jmf9rdzl4mmfkn5gjcavq2jfcz6dgjafl3v9vgl"; depends=[MASS MCMCpack mvtnorm]; }; sortable = derive2 { name="sortable"; version="0.5.0"; sha256="1y6cljcjai2k2j7abzn07ab170gpp25zvl9gk755l4gwi7clgl2c"; depends=[assertthat ellipsis htmltools htmlwidgets jsonlite learnr rlang shiny]; }; sorvi = derive2 { name="sorvi"; version="0.8.20"; sha256="034vh2yn3ljjm4p2x2sy4n1gr28m8zfzivf12882if6xyva1xq96"; depends=[checkmate dlstats dplyr ggplot2 gh lubridate purrr rlang rvest tidyr xml2]; }; - sos = derive2 { name="sos"; version="2.1-4"; sha256="0qa8plmdn4rky4i5gvgm4gny8nfvcd0hql7c5vlpwr4i2x1gid9p"; depends=[brew]; }; + sos = derive2 { name="sos"; version="2.1-7"; sha256="11q698wr3xnzr0nmzb9frifrizfl27f1ymdi6mrvyzw0y9cv3sq6"; depends=[brew]; }; sotkanet = derive2 { name="sotkanet"; version="0.9.79"; sha256="1d6g09rf7irk3d8hkm6ahp8zl6lj24jnipwvzr0njx2sqi3fwd4f"; depends=[curl httr jsonlite]; }; sotu = derive2 { name="sotu"; version="1.0.4"; sha256="0hx37as51q3rk7z9vp8awhkj7a87nwd2jlp1hvfkli2j6l07sk7d"; depends=[]; }; sound = derive2 { name="sound"; version="1.4.5"; sha256="1kbbb614d0fmj9l0yjiwf5yqnl7sby4xklp7qwp6rwjvq9bnm0ab"; depends=[]; }; soundClass = derive2 { name="soundClass"; version="0.0.9.2"; sha256="0z697asv2kzs93b45ndbkxfdzq3fmi1f6aprvpxps4x354gg2pi6"; depends=[DBI dbplyr dplyr generics htmltools keras magrittr RSQLite seewave shiny shinyBS shinyFiles shinyjs signal tuneR zoo]; }; soundcorrs = derive2 { name="soundcorrs"; version="0.4.0"; sha256="1azvsv3bghlab8q24wbb6xwd5a4cydx1cagvhk8h0h5ib9957zab"; depends=[]; }; soundecology = derive2 { name="soundecology"; version="1.3.3"; sha256="16h6gbdlyav7wbfisdv1f2zsqhr45liidgj7qqk8giwjxgan8q97"; depends=[ineq oce pracma seewave tuneR vegan]; }; - soundgen = derive2 { name="soundgen"; version="2.5.3"; sha256="0mbf9c640gqx7amc94z0dc0b8lky1b6db4w60lsk0lad11f5zl9m"; depends=[doParallel dtw foreach mvtnorm phonTools seewave shiny shinyBS shinyjs signal tuneR zoo]; }; + soundgen = derive2 { name="soundgen"; version="2.6.0"; sha256="18chlzynbkfvqc4dipdxdlk90kz0wqd6qwcax0qg7rc85ghfx8hh"; depends=[doParallel dtw foreach mvtnorm nonlinearTseries phonTools seewave shiny shinyBS shinyjs signal tuneR zoo]; }; sourcetools = derive2 { name="sourcetools"; version="0.1.7-1"; sha256="1l9i9ram12pjks8h2gzmj119wf4ixwyhljsfv289dn8dgbdjp0cn"; depends=[]; }; sovereign = derive2 { name="sovereign"; version="1.2.1"; sha256="1v5cchwia8v9h4fpb506v6nikp5k042axmryjmqrgimaly8dk9nv"; depends=[broom dplyr furrr future ggplot2 gridExtra lmtest lubridate magrittr mclust purrr randomForest sandwich stringr strucchange tidyr xts zoo]; }; sox = derive2 { name="sox"; version="1.0"; sha256="1rg1658jz6sc8dfp5gd8dmnxl747mw02zz24r7231vjmdwc60bl5"; depends=[glmnet Rcpp survival]; }; @@ -17267,7 +17486,7 @@ in with self; { spAddins = derive2 { name="spAddins"; version="0.2.0"; sha256="19wbcghcf0f9qvqy92jhsdcpmd9b4lkhxndvr71cyhzga539lh1n"; depends=[magrittr purrr rstudioapi stringr]; }; spBFA = derive2 { name="spBFA"; version="1.3"; sha256="1bi3lhbx37zlj2x0nql51x5422zxc1gcbn8vqjf81badwf80fwsp"; depends=[msm mvtnorm pgdraw Rcpp RcppArmadillo]; }; spBayes = derive2 { name="spBayes"; version="0.4-6"; sha256="0530fhb832nr1vzhwml696cbvwpphjha35i20q0aixxqg8fd35jw"; depends=[coda Formula magic Matrix sp]; }; - spBayesSurv = derive2 { name="spBayesSurv"; version="1.1.6"; sha256="1i5b0k1h2fq44n1hpb4cs5j2rz0s1x94d36yglvd24i55mjjzfk4"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; }; + spBayesSurv = derive2 { name="spBayesSurv"; version="1.1.7"; sha256="02fjc49yx15jqsflf6vxqwskj5gzfhpfzb8m81nxmc9vq8l475y8"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; }; spCP = derive2 { name="spCP"; version="1.3"; sha256="0rphd8zawr2r14dzwv77plk5xw020pkc26ir72qiqc1acin42xd1"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; spData = derive2 { name="spData"; version="2.2.2"; sha256="1v8407lkkj0flsphsnqvdr35knkasvjv9v29451mkwkciglmi2l7"; depends=[sp]; }; spDates = derive2 { name="spDates"; version="1.1"; sha256="0k6383hgrs4751qnwx03s85a9a0ldpxm7xanrnmg13plc2713kvm"; depends=[data_table dplyr ggplot2 gstat magrittr raster rcarbon rlang smatr sp viridisLite]; }; @@ -17275,16 +17494,16 @@ in with self; { spFW = derive2 { name="spFW"; version="0.1.0"; sha256="1d00a01mnwc7lcnqgz2dfglhwqwhh9vm4yd904zq3s26zv4qapyf"; depends=[Rcpp RcppArmadillo]; }; spGARCH = derive2 { name="spGARCH"; version="0.2.2"; sha256="1wrmk2ybgysvibfy8vvp7pyqda5apqp0jxjfp3hlb416fza52966"; depends=[Matrix nleqslv Rcpp RcppEigen Rsolnp spdep truncnorm]; }; spINAR = derive2 { name="spINAR"; version="0.1.0"; sha256="1g4yms3h7m42zfjix1n2yrxi5zj0v97klry6d4r7n0iwx4rllpp4"; depends=[checkmate progress]; }; - spMC = derive2 { name="spMC"; version="0.3.12"; sha256="1ybjpm6737yr0pyqhk4fz4288r5mgkmknzfcw8ffc680b8qnxknr"; depends=[]; }; + spMC = derive2 { name="spMC"; version="0.3.15"; sha256="1fv6769xz44xc50ad00df7bacqbwy6xnqm2072zjgkl1dbskfjma"; depends=[]; }; spMaps = derive2 { name="spMaps"; version="0.4.0"; sha256="0n9693aam7gsclfhijq7cy61l0w4mm5vf3rjaz5w0jrz77lrkprh"; depends=[raster rgeos sp]; }; spNNGP = derive2 { name="spNNGP"; version="1.0.0"; sha256="0z09hxmm2pbxsbm3zqk839z2gb3g2n2hqkahcbvcgywrqn3v8cal"; depends=[coda Formula RANN]; }; - spNetwork = derive2 { name="spNetwork"; version="0.4.3.6"; sha256="055h6xxs9kpl1yzcl5ha4pbgbzvp15vqr43xhbdic58flfgc13mr"; depends=[abind BH cubature data_table dbscan dplyr future_apply ggplot2 igraph progressr Rcpp RcppArmadillo RcppProgress Rdpack sf spdep]; }; + spNetwork = derive2 { name="spNetwork"; version="0.4.3.7"; sha256="0qhy0dh4cgnxlbkcadnjzwpnbjq0navikr3gsczg562h4jq0ds8w"; depends=[abind BH cubature data_table dbscan dplyr future_apply ggplot2 igraph progressr Rcpp RcppArmadillo RcppProgress Rdpack sf spdep]; }; spOccupancy = derive2 { name="spOccupancy"; version="0.6.1"; sha256="1ffgkqilh21dblks7q1iclgwimd70ks6xikmrprk010z4n9l2x67"; depends=[abind coda doParallel foreach lme4 MASS RANN]; }; spRingsteen = derive2 { name="spRingsteen"; version="0.1.0"; sha256="13mdbsbq51sp34xp04lgc4klwb3chnnkvh5r99qfapbbr0vra8vl"; depends=[devtools rlang]; }; spTDyn = derive2 { name="spTDyn"; version="2.0.2"; sha256="010x3rjncasly1scngwyiys7asmk4ay51bzhk0zfjazwfkmqd12r"; depends=[coda sp spacetime spTimer]; }; spThin = derive2 { name="spThin"; version="0.2.0"; sha256="0j10j1cbbwp3baqm3b59rxlnd643mkx1mirlxpnr1ad2g7xpm69f"; depends=[fields knitr spam]; }; spTimer = derive2 { name="spTimer"; version="3.3.2"; sha256="0dlsyj0mawpgxr1yn4ldqm3xh148c79lk55fq475zjzyiwz9ynfc"; depends=[coda extraDistr sp spacetime]; }; - spaMM = derive2 { name="spaMM"; version="4.2.1"; sha256="0yb80sph04k5r7pfsrxcr9qlkl9jnfsy5ifhqxpkpkafx45hc4jb"; depends=[boot crayon geometry gmp MASS Matrix minqa nlme nloptr numDeriv pbapply proxy Rcpp RcppEigen ROI]; }; + spaMM = derive2 { name="spaMM"; version="4.3.0"; sha256="0dk7vmv7wacd2sbjwbmgag0vbwbd4mdrvldrc5p0s90m5wriy76a"; depends=[boot crayon geometry gmp MASS Matrix minqa nlme nloptr numDeriv pbapply proxy Rcpp RcppEigen ROI]; }; spaa = derive2 { name="spaa"; version="0.2.2"; sha256="163iipz1knxx1lzby9a3n1f014yqkf25z1wpwwy4gbx7sia499d5"; depends=[]; }; spaceNet = derive2 { name="spaceNet"; version="1.2"; sha256="1s2672icxs0qvdhl52xhllgvh1i9mjfrn5j3icyw6h61ljbnhy11"; depends=[MASS mclust permute RcppTN Rfast sna vegan]; }; spacefillr = derive2 { name="spacefillr"; version="0.3.2"; sha256="0raaw9ib8b2dzkh4w28wpxcgxs7ky328yaayb64lc39syf7g19dv"; depends=[Rcpp]; }; @@ -17298,7 +17517,7 @@ in with self; { spam64 = derive2 { name="spam64"; version="2.9-0"; sha256="1k2ah76l38xwzn7c541b7nip2yx8n8yh6p9j80rpkc3jdni2n9dq"; depends=[]; }; spamtree = derive2 { name="spamtree"; version="0.2.2"; sha256="1z1dyv6cvcdilqyfpzgl3zr0jmzjn2sznrvypvxx7c8i6qfq8nd0"; depends=[dplyr FNN magrittr Rcpp RcppArmadillo rlang tibble]; }; spanish = derive2 { name="spanish"; version="0.4.2"; sha256="15drc11lh0qxpww50p0smi8qxfbln82bx0yd74jqf71irhk5jxyp"; depends=[magrittr xml2]; }; - spant = derive2 { name="spant"; version="2.10.0"; sha256="08ggrsnmimpv384ig1apbxjjb6l4wp9lvmjw34dkn4jzckyclpc5"; depends=[abind expm fields irlba jsonlite minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; + spant = derive2 { name="spant"; version="2.12.0"; sha256="10rm1h4xjc8lwss85nhfkv78dcbqyfnd8d4x7mvwgglvf365f7s4"; depends=[abind expm fields irlba jsonlite minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; sparcl = derive2 { name="sparcl"; version="1.0.4"; sha256="138krflvfdlx4hlh90mswds51i8aw2vv00gm5lgkfsvxj4w324jg"; depends=[]; }; spark_sas7bdat = derive2 { name="spark.sas7bdat"; version="1.4"; sha256="1s1hd6hvjxnfb3w10v93pggijmm2h4rcsf7ckl34j2sw9bvv7zka"; depends=[sparklyr]; }; sparkavro = derive2 { name="sparkavro"; version="0.3.0"; sha256="0g6ac9msfbx8f8j8rj0hvlxjsn317zyam207q7i8kf0hshs1r58f"; depends=[DBI dplyr sparklyr]; }; @@ -17327,6 +17546,7 @@ in with self; { sparseMVN = derive2 { name="sparseMVN"; version="0.2.2"; sha256="1vd97w4mrc6s9d95a43cpz90adhn2015as93j55hm5phpgj24v75"; depends=[Matrix]; }; sparseMatEst = derive2 { name="sparseMatEst"; version="1.0.0"; sha256="06y061zl6id7cfw3cqzvwykzlijmala8hj61i04mgc491ngybimv"; depends=[glasso]; }; sparseR = derive2 { name="sparseR"; version="0.2.2"; sha256="0sly1bga1n5nvhbbfwbzy4giyvlhg4mivqibj4nzc46pk8xlyhc3"; depends=[dplyr magrittr ncvreg recipes rlang]; }; + sparseSEM = derive2 { name="sparseSEM"; version="3.8-1"; sha256="1vpma0hcha3fk45yp3q3nqfadgpfkwmxc4mfa3b7jkb61ha71j4i"; depends=[]; }; sparseSVM = derive2 { name="sparseSVM"; version="1.1-6"; sha256="0b0qiikjyyh9qfd4jl69zqnlp7adxq63mwsxvgwvyc0pv5ccg8i0"; depends=[]; }; sparsebnUtils = derive2 { name="sparsebnUtils"; version="0.0.8"; sha256="1x1phd33r3ci72sbm0pkmigwbi4x59pdz8n5919119mkxdf740vs"; depends=[Matrix nnet]; }; sparsediscrim = derive2 { name="sparsediscrim"; version="0.3.0"; sha256="1fzvki3az1y5bz6d7lygv3hjbzn17gq8g2s7xqmldlpq1v4dhjar"; depends=[bdsmatrix corpcor dplyr ggplot2 mvtnorm rlang]; }; @@ -17344,9 +17564,9 @@ in with self; { sparta = derive2 { name="sparta"; version="0.8.4"; sha256="109i8yhv8snhpccrhxy1k8xcy9jj8m3li2d7vaylvxbrlnc26d89"; depends=[Rcpp RcppArmadillo]; }; sparvaride = derive2 { name="sparvaride"; version="0.1.0"; sha256="17skm44cdv540jik8lv5y0dp6yzjgy775vjzq3dv1jv58nqjvps1"; depends=[Rcpp RcppArmadillo]; }; spass = derive2 { name="spass"; version="1.3"; sha256="1c148z0i3d185hnf54xmgppjrblv3b2s3sm0lmj78gvav04mj5s4"; depends=[geepack MASS multcomp mvtnorm Rcpp]; }; - spatPomp = derive2 { name="spatPomp"; version="0.31.0.0"; sha256="0zjsqpn536644fmyyarkmw46m053mx38k6dl1ahvpca414s0m5rh"; depends=[abind dplyr foreach ggplot2 magrittr pomp rlang stringr tidyr]; }; + spatPomp = derive2 { name="spatPomp"; version="0.32.0"; sha256="01mdxkgkn6fl65yj7wqizy0hh6rhfh2rjy6cviydv4b3nml2sf6k"; depends=[abind dplyr foreach ggplot2 magrittr pomp rlang stringr tidyr]; }; spate = derive2 { name="spate"; version="1.7.4"; sha256="0fc09y54g1h9pmc0rfwbrlzsck27kxhsynzwyxydysmda133spdf"; depends=[mvtnorm truncnorm]; }; - spatgeom = derive2 { name="spatgeom"; version="0.2.0"; sha256="1a6f4a9p81j96hhx3lqisii0d2sxfy5c35ds7qkyghpp9mgvg7xg"; depends=[cowplot dplyr ggplot2 lwgeom purrr scales sf]; }; + spatgeom = derive2 { name="spatgeom"; version="0.3.0"; sha256="1z6haqqzghji6703crs69nvqx93h19bdkw0frpmrcxa60fxm0kyr"; depends=[cowplot dplyr ggplot2 lwgeom purrr scales sf]; }; spatgraphs = derive2 { name="spatgraphs"; version="3.4"; sha256="1xiq4a8br46qk19k23kkb6l1b7ciw9lmmrvwfznwkamwps6dwlg8"; depends=[Matrix Rcpp]; }; spathial = derive2 { name="spathial"; version="0.1.2"; sha256="1vwzcwpmx8kwv821vjf940qd5am3k0shf1s14jva71mgxs70ddmb"; depends=[class igraph irlba knitr MASS matrixStats pracma rmarkdown Rtsne]; }; spatial = derive2 { name="spatial"; version="7.3-16"; sha256="01p42q72mb8b4fdm75723nj64r3l0d8px1l9fyklihay9jk6arg4"; depends=[]; }; @@ -17356,37 +17576,36 @@ in with self; { spatialTIME = derive2 { name="spatialTIME"; version="1.3.3-3"; sha256="06fwjifvgjb9xcxlgd32s8ik9dcjakc5z25lmhvp63lkyyazvqxs"; depends=[crayon dplyr furrr future ggplot2 magrittr plyr purrr RColorBrewer rlang scales spatstat_explore spatstat_geom tidyr tidyselect]; }; spatialfusion = derive2 { name="spatialfusion"; version="0.6-6"; sha256="14qccp9ca7b7v9w4fj04a99mx6qchfs8588fl16qfdmfbazwnfra"; depends=[deldir fields Rcpp rgeos rstan sp spam]; }; spatialprobit = derive2 { name="spatialprobit"; version="1.0"; sha256="1g65c081xmhfp45lidn57xwryk4pmzzixs3b2qzixzg4knks74dy"; depends=[Matrix mvtnorm spatialreg spdep tmvtnorm]; }; - spatialreg = derive2 { name="spatialreg"; version="1.2-8"; sha256="1pprsznmj3hwzi1anifb3bjcg6nmf8048dyyywxdj04ql1ybf30m"; depends=[boot coda expm LearnBayes MASS Matrix nlme sf spData spdep]; }; + spatialreg = derive2 { name="spatialreg"; version="1.2-9"; sha256="0gmrrddhhs5fcgfgm8w3rkjk6g6vdndlj92jb8naihbwxkzgkya5"; depends=[boot coda expm LearnBayes MASS Matrix multcomp nlme sf spData spdep]; }; spatialrisk = derive2 { name="spatialrisk"; version="0.7.0"; sha256="0mqi8jrz1msk2aaza67vfp9s21f372mhvbivwxy56fxrl7vp975v"; depends=[classInt colourvalues data_table dplyr fs GenSA geohashTools ggplot2 leafem leafgl leaflet lubridate Rcpp RcppProgress sf tmap units viridis]; }; - spatialsample = derive2 { name="spatialsample"; version="0.3.0"; sha256="1xfgd8ry7h231ic1zx85g331wg16c569br7dk55agfhpsg1kc8xj"; depends=[cpp11 dplyr ggplot2 glue purrr rlang rsample sf tibble tidyselect units vctrs]; }; + spatialsample = derive2 { name="spatialsample"; version="0.4.0"; sha256="1f44zzga5df5vqxzvc40sbivdhzx4x62qbqx5vkw9rxw5yrm9d2d"; depends=[cpp11 dplyr ggplot2 glue purrr rlang rsample sf tibble tidyselect units vctrs]; }; spatialwarnings = derive2 { name="spatialwarnings"; version="3.0.3"; sha256="03a0gb8v6028v6q5w3iap8fn9nkb2rpnabqgzmr2dyxnpfgr9dn3"; depends=[future future_apply ggplot2 gsl plyr Rcpp RcppArmadillo segmented]; }; spatialwidget = derive2 { name="spatialwidget"; version="0.2.3"; sha256="0j0v0cyqndlg9p7g03gp1br9b2i3p50abzpw67k3cawm96a87crj"; depends=[BH colourvalues geojsonsf geometries jsonify rapidjsonr Rcpp sfheaders]; }; spatsoc = derive2 { name="spatsoc"; version="0.1.16"; sha256="1pyw6606kwskgcfnzvgzvy8n4i9s3mmn1789d1lhk04h14r33fns"; depends=[adehabitatHR data_table igraph rgeos sp]; }; - spatstat = derive2 { name="spatstat"; version="3.0-3"; sha256="0ajhf43jkds9b0x7l02mis47b1c5w78i742axa84g0ysaqv7gbqx"; depends=[spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_utils]; }; + spatstat = derive2 { name="spatstat"; version="3.0-6"; sha256="0vlpa5a1b5s27lgxkq65iixrsbbj0x4zahg0sfsak0ackj8ks577"; depends=[spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_utils]; }; spatstat_Knet = derive2 { name="spatstat.Knet"; version="3.0-2"; sha256="1yvdasrxmsa2m9016kclb33kv5893fsz5rcr416yhpf6jixdsfh8"; depends=[Matrix spatstat spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_sparse spatstat_utils]; }; spatstat_data = derive2 { name="spatstat.data"; version="3.0-1"; sha256="002kvli3n9cppaar7q062dm4fapdgkyf1daq5zscxsanwcflpswf"; depends=[Matrix spatstat_utils]; }; - spatstat_explore = derive2 { name="spatstat.explore"; version="3.1-0"; sha256="0vh8kl1b3bi2jzqi5pi7j8d96gfjsxnpgz2b44sbicrdcn14ivw7"; depends=[abind goftest Matrix nlme spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils]; }; - spatstat_geom = derive2 { name="spatstat.geom"; version="3.1-0"; sha256="1zj7xayp8b1crkl6ixkcgh9bf6zb6kh73965jx4gzjxbkdkrcjhq"; depends=[deldir polyclip spatstat_data spatstat_utils]; }; + spatstat_explore = derive2 { name="spatstat.explore"; version="3.2-1"; sha256="02n64bml361xakfbj71m7mgkb0p6szqc55lijjsnwa3z69pwwshb"; depends=[abind goftest Matrix nlme spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils]; }; + spatstat_geom = derive2 { name="spatstat.geom"; version="3.2-1"; sha256="1yrms8jwk5svggm73y0nk4j1k85rd92fvgvd4ia6nina63pmvbph"; depends=[deldir polyclip spatstat_data spatstat_utils]; }; spatstat_gui = derive2 { name="spatstat.gui"; version="3.0-1"; sha256="1y6z3gdad0nhqg494b5pjq4h0mr3mcrhnnc0chy56lf8chb6p5jb"; depends=[rpanel spatstat spatstat_data spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random spatstat_utils]; }; - spatstat_linnet = derive2 { name="spatstat.linnet"; version="3.0-6"; sha256="0sk0zg4fhy3pryi06i0lvhkrgh47r3h4jxw231i8n5mzng1x828n"; depends=[Matrix spatstat_data spatstat_explore spatstat_geom spatstat_model spatstat_random spatstat_sparse spatstat_utils]; }; + spatstat_linnet = derive2 { name="spatstat.linnet"; version="3.1-1"; sha256="0adha3bi1a250p8wm7agqdmwzznd6blsfg0km11n25ad8y2r5q0c"; depends=[Matrix spatstat_data spatstat_explore spatstat_geom spatstat_model spatstat_random spatstat_sparse spatstat_utils]; }; spatstat_local = derive2 { name="spatstat.local"; version="5.0-1"; sha256="02ip6d2mr07n3lv4i5xdmb1j55syk5hwjwr7j81ibxkp3gj8gm61"; depends=[spatstat spatstat_data spatstat_explore spatstat_geom spatstat_model spatstat_random spatstat_sparse spatstat_utils tensor]; }; - spatstat_model = derive2 { name="spatstat.model"; version="3.2-1"; sha256="0vsrh47lhn4fkxanmlyz18wyji6w876yw4mx16p8dxyw8zdc1rbs"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_explore spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; - spatstat_random = derive2 { name="spatstat.random"; version="3.1-4"; sha256="1lzp7pmfp384zv91p9ac6id66098w52nfpskms6zv4m9hzhpbkd6"; depends=[spatstat_data spatstat_geom spatstat_utils]; }; + spatstat_model = derive2 { name="spatstat.model"; version="3.2-4"; sha256="0vcxwwc4kjfmjd80sk7rbv8a9yg9v2m94brgww8fiibrm6m9psi6"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_explore spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; + spatstat_random = derive2 { name="spatstat.random"; version="3.1-5"; sha256="128rm8k4b5rklddmnhbsv93jj6qym0fngir9nb65cawg3zb991m6"; depends=[spatstat_data spatstat_geom spatstat_utils]; }; spatstat_sparse = derive2 { name="spatstat.sparse"; version="3.0-1"; sha256="070ddmi73ly2lv23z556adgn7vc7xyhl2cnh1cis8sinmpfz071c"; depends=[abind Matrix spatstat_utils tensor]; }; - spatstat_utils = derive2 { name="spatstat.utils"; version="3.0-2"; sha256="05a666bd18mhdq7gci3pwnj88y6qbw23qmb0p9qkysqsy8ncsq5y"; depends=[]; }; + spatstat_utils = derive2 { name="spatstat.utils"; version="3.0-3"; sha256="0j6w9b479qqah2vzbq31v1xa6rjql8a85hdlahqhwqd9j1scd03s"; depends=[]; }; spatsurv = derive2 { name="spatsurv"; version="1.8-2"; sha256="0v6l1vxcvy6bdg6inszcz4rryb99v9ixxcmh4a3381s4md9h6z4v"; depends=[fields iterators lubridate Matrix raster RColorBrewer rgeos sp spatstat_explore spatstat_geom spatstat_random stringr survival]; }; spbabel = derive2 { name="spbabel"; version="0.6.0"; sha256="0y30v7p54mmy43w7wclhywwk1zih6h66hkgd7dc101yiqvnx4m84"; depends=[dplyr pkgconfig rlang sp tibble]; }; spc = derive2 { name="spc"; version="0.6.7"; sha256="02dw1hh3ksx119wf7qkg01m7h60pmsc3vkryw5fikyxyfz871ldl"; depends=[]; }; spc4sts = derive2 { name="spc4sts"; version="0.6.3"; sha256="0lvsixjgdfgnr7y7kk2227bcs8sqy2mrpw50dwwgdjvm5q0sr7l7"; depends=[gridExtra rpart]; }; spcadjust = derive2 { name="spcadjust"; version="1.1"; sha256="016i3zaaq800x4niz4fixa57nfj1m10sz5xskff4vq4v9fjn2sl0"; depends=[]; }; - spcosa = derive2 { name="spcosa"; version="0.4-1"; sha256="04g7d68ff8vkj2ygycnllm73kixkckdc087wdg3c5ahydyjrc2yi"; depends=[ggplot2 rJava sp]; }; + spcosa = derive2 { name="spcosa"; version="0.4-2"; sha256="1y3qbz9kslb5k7h62pk7g2lk69y9i625r2q0dychhj91fdqx30n4"; depends=[ggplot2 rJava sp]; }; spcov = derive2 { name="spcov"; version="1.3"; sha256="037pl4kh87b85v7q1nrxcm7vw5f3pr7m2b76424ic9sxa56wfdnp"; depends=[]; }; spcr = derive2 { name="spcr"; version="2.1.1"; sha256="09clpz0vqssagmfjcrs2qp5i61ppjr9nxn342l6gbdnbw91wc7f3"; depends=[]; }; spd = derive2 { name="spd"; version="2.0-1"; sha256="00zxh4ri47b61jkcjf5idl9hhlfld6rhczsnhmjsax59884f2i8m"; depends=[KernSmooth]; }; spdep = derive2 { name="spdep"; version="1.2-8"; sha256="144idklvyvnzfdnigzyw6wqhxyrfjw8pm7vdmlk5a0yi235v97wd"; depends=[boot deldir e1071 s2 sf sp spData units]; }; spdl = derive2 { name="spdl"; version="0.0.4"; sha256="1q0yxmbq4p120pmrsm9v2z88d62lvns907vk7l5xnxzmb85wf0i0"; depends=[RcppSpdlog]; }; spdownscale = derive2 { name="spdownscale"; version="0.1.0"; sha256="0pl560km9629iwy13h7359ab7ixzs09hg986kvk0xbnc348srb86"; depends=[]; }; - spdplyr = derive2 { name="spdplyr"; version="0.4.0"; sha256="0lijp78wgrky103137vfk3k4s051qppd6jq6s065k9i7y1azbpc1"; depends=[dplyr rlang sp spbabel tibble]; }; spduration = derive2 { name="spduration"; version="0.17.1"; sha256="1hsz4hcw85f1rj2pd8ppzsd1r8fh4yf6axc11yf2hd287ghzzxzy"; depends=[corpcor forecast MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; spdynmod = derive2 { name="spdynmod"; version="1.1.6"; sha256="1zbh1p3lmil4vsrw7q6af3p5xqvhw2k9hx59kbzabnzj4gy8wjk3"; depends=[animation deSolve raster sp]; }; speakr = derive2 { name="speakr"; version="3.2.1"; sha256="0gq8bqpxdjpaziwm1zqb2vglh2af1xwxm0x5d1zkxldbhky8g9fc"; depends=[ggplot2 lifecycle readr stringr tibble]; }; @@ -17409,6 +17628,7 @@ in with self; { spectrolab = derive2 { name="spectrolab"; version="0.0.18"; sha256="1iwhsz19yfvf71zg1ifg9d3xb9rjbng1h5g7vfakm1jckin9mrv2"; depends=[RColorBrewer shiny shinyjs]; }; speech = derive2 { name="speech"; version="0.1.5"; sha256="1jxlk24vspsbk27p63kccadbf09vvb7xxx0wahj7908ygg7q5a1f"; depends=[dplyr lubridate magrittr pdftools purrr rvest stringr tibble tidyr tm]; }; speechbr = derive2 { name="speechbr"; version="2.0.0"; sha256="0jf0zj64hm1zxbpcry1iff3nddf2wl315whzcbzj8936qfam92p5"; depends=[abjutils dplyr glue httptest httr janitor lubridate magrittr purrr rlang rvest stringr tibble tidyr xml2]; }; + speedglm = derive2 { name="speedglm"; version="0.3-5"; sha256="0jxvh9gbhip1hj7hzjs5fj8iw6ibvl6hc0llcg2j9wqgq5vkcrpq"; depends=[biglm MASS Matrix]; }; speedycode = derive2 { name="speedycode"; version="0.3.0"; sha256="0k9pnrmv5zmiyia1js3va2gx7nwbg2b35jl4r1lm2hwl3c901jfw"; depends=[dplyr purrr stringr]; }; spef = derive2 { name="spef"; version="1.0.9"; sha256="115lmv2a21ws1mj22v1fbk72mqn3siqmw3frbg4nci96lnyr7qh6"; depends=[BB ggplot2 nleqslv plyr sm SQUAREM survival]; }; speff2trial = derive2 { name="speff2trial"; version="1.0.5"; sha256="18g4ap6m9li42amj1aa9dazp2sqz161zfijklmnphq63f2b5gczc"; depends=[leaps survival]; }; @@ -17418,6 +17638,7 @@ in with self; { sperich = derive2 { name="sperich"; version="1.5-8"; sha256="0v4mnv9nl0dvmmfx10w03k02pwjjnip9526m3j1kpgn6c4wk1h93"; depends=[foreach rgdal sp]; }; sperrorest = derive2 { name="sperrorest"; version="3.0.5"; sha256="0hhigyv0p92gmxkchy4cim9mczsclahy5k6zkql5bjdky19zf72q"; depends=[dplyr future future_apply ROCR stringr]; }; spex = derive2 { name="spex"; version="0.7.1"; sha256="0lsmh1sywd4si0v10aix44hybwph3gan8w8cxz956dcgkz60p41v"; depends=[crsmeta quadmesh raster reproj sp]; }; + spfa = derive2 { name="spfa"; version="1.0"; sha256="0xkq5679whrvxnbbcbari533jpima27gcyqbszvkg0z95q956ndj"; depends=[Rcpp RcppArmadillo]; }; spfda = derive2 { name="spfda"; version="0.9.1"; sha256="094j68gyy5yw7d2mn3n864h6vf8nd76x9ypfzc1liggnw7qs0fdl"; depends=[mathjaxr]; }; spfilteR = derive2 { name="spfilteR"; version="1.1.5"; sha256="1s11d88y4jwzd85lyircgz9j67mwbqld1jicynxb7wayk8akfyf4"; depends=[]; }; spflow = derive2 { name="spflow"; version="0.1.0"; sha256="0a5nirccwcc2z4dn3gxdlhdjz7sxv1r23clawy0kwn4ggdkmphp1"; depends=[coda Matrix Rdpack RSpectra]; }; @@ -17440,7 +17661,7 @@ in with self; { spinyReg = derive2 { name="spinyReg"; version="0.1-0"; sha256="0kbg7rncrrl5xdsaw9vj909x97mfp77mjnvghczplmnwmmanyn72"; depends=[]; }; spiralize = derive2 { name="spiralize"; version="1.0.6"; sha256="10zz0f3z033pqi9rm3kgac85i5h8ngg2cx4dlr8z5y8v08dpln6b"; depends=[circlize GetoptLong GlobalOptions lubridate]; }; spiritR = derive2 { name="spiritR"; version="0.1.1"; sha256="1fjr63rl9hwqxzgm4lkb9v74cxxpi4lrlcgjixdm7zgccm8ihdvh"; depends=[httr magrittr xml2]; }; - spiro = derive2 { name="spiro"; version="0.1.2"; sha256="026l0hq7jxm9hnmwmjkyvs7601yz9ljcz45pily6jb2gjcg4z8w7"; depends=[cowplot digest ggplot2 knitr readxl signal xml2]; }; + spiro = derive2 { name="spiro"; version="0.2.0"; sha256="1nd61m6x4nj9fjqbsipl9y7b4bqc2zayg0ni2ap83jfdwwiqj7zn"; depends=[cowplot digest ggplot2 knitr readxl signal xml2]; }; splancs = derive2 { name="splancs"; version="2.01-43"; sha256="0j641xipb3nzncxwgf1adrcc95jqinhx68fr55mcixk93xg5cldk"; depends=[sp]; }; splash = derive2 { name="splash"; version="1.0.2"; sha256="1iviwf7dxlrbfzjigl8wd8q3i0jkdnb7mr8zy6zg0w81p4416q42"; depends=[]; }; spldv = derive2 { name="spldv"; version="0.1.1"; sha256="0v721z8v0dhnkcbljw592hhlgg32a6sh9hz4lx9p2jpkx8mpz9bb"; depends=[car Formula MASS Matrix maxLik memisc numDeriv spatialreg sphet]; }; @@ -17448,7 +17669,7 @@ in with self; { splinetree = derive2 { name="splinetree"; version="0.2.0"; sha256="0gqb3kwca42crrx6fj42ryl5pkxvankhp1chdlvi5lgg8mzmqsnl"; depends=[ggplot2 mclust mosaic nlme rpart treeClust]; }; splitFeas = derive2 { name="splitFeas"; version="0.1.0"; sha256="1cfiis32h5kkp8r1mndmj4xss9gw96vdzk7q68q3jhbwqiaxp9rp"; depends=[corpcor matrixStats]; }; splitSelect = derive2 { name="splitSelect"; version="1.0.3"; sha256="03gziy1hhm35hw8q2w9w6d4x2zci5q2wds0mkzihvfm0wkshi4fw"; depends=[doParallel foreach glmnet multicool]; }; - splitTools = derive2 { name="splitTools"; version="0.3.3"; sha256="0w3pbkbyc46b32kw4jcw1lvrq311mqnfgihymkyf3cgmn51d30jb"; depends=[]; }; + splitTools = derive2 { name="splitTools"; version="1.0.0"; sha256="1qcadczvvk236nfdx7glfqgqs9x1r6hkzspcxfx59r2n1bl85yna"; depends=[]; }; splitfngr = derive2 { name="splitfngr"; version="0.1.2"; sha256="0cf9y68m72j890a732m0n784nr12ydljr6s8i80f0in6q8lmw8ls"; depends=[lbfgs]; }; splithalf = derive2 { name="splithalf"; version="0.8.2"; sha256="0lq1a07kh2jdvg68p2jzhjcidwp6r83qbkggqdv0rmdj4x47lj5s"; depends=[dplyr ggplot2 lme4 patchwork plyr psych Rcpp robustbase tidyr]; }; splithalfr = derive2 { name="splithalfr"; version="2.2.0"; sha256="1c3q7x4fipsym0gz22kgl75r594hylbcci3a76q3yp0zazjmxxhx"; depends=[bcaboot dplyr psych rlang tibble]; }; @@ -17460,9 +17681,9 @@ in with self; { splus2R = derive2 { name="splus2R"; version="1.3-3"; sha256="035zd22zcpkh74rik9ws6g8al6vjz7jgrqs5si361bzb5n290p3x"; depends=[]; }; splutil = derive2 { name="splutil"; version="2022.6.20"; sha256="02hic08ckjg7iyjcyjncrkvjnpbpxk0v8g1yxy2s1vaw0mmfj4cz"; depends=[data_table ggplot2 magrittr]; }; spm = derive2 { name="spm"; version="1.2.2"; sha256="0slpy3cmv5l2gbgvy3yfdhzm73427bl39shadpmf3jkkbflcczsn"; depends=[biomod2 gbm gstat psy randomForest ranger sp]; }; - spm2 = derive2 { name="spm2"; version="1.1.2"; sha256="1cf5j5gi4h8v5sjlbj279h5la8nscn3n3p3prmci9258593xgkjq"; depends=[e1071 fields gbm glmnet gstat MASS nlme psy randomForest ranger sp spm]; }; - spmodel = derive2 { name="spmodel"; version="0.3.0"; sha256="1nkmvprjp1p5n2g8ikffdvfb5y26kbvm1nd0pwq3gacc14ghgxa7"; depends=[generics Matrix sf tibble]; }; - spmoran = derive2 { name="spmoran"; version="0.2.2.6"; sha256="0d97saji49k69fgkg0zk5pdrmy81kvij96nv1v5y8axf8in2znhb"; depends=[doParallel fields FNN foreach ggplot2 Matrix rARPACK RColorBrewer sp spdep vegan]; }; + spm2 = derive2 { name="spm2"; version="1.1.3"; sha256="1fac131zg5z7jxbkjy6745b4pggpmkjyl9iyq15yr7yzfs77yz62"; depends=[e1071 fields gbm glmnet gstat nlme randomForest sp spm]; }; + spmodel = derive2 { name="spmodel"; version="0.4.0"; sha256="0viv56fk4qq16grzhjx9fviyykwh2rki5q1fs92fnjpghnhjfwv7"; depends=[generics Matrix sf tibble]; }; + spmoran = derive2 { name="spmoran"; version="0.2.2.9"; sha256="1xbvr9wrp48a31ggr2j8kivkpjxl1n8cmhfmlz13dcd15byvjrcs"; depends=[doParallel fields FNN foreach ggplot2 Matrix rARPACK RColorBrewer sf spdep vegan]; }; spnaf = derive2 { name="spnaf"; version="0.2.1"; sha256="1v19rhcy8na5iz0mqkadgmqyzq9maqnzb4s7l6blq6zz3krgaj0s"; depends=[dplyr magrittr rlang sf spdep tidyr]; }; spnet = derive2 { name="spnet"; version="0.9.1-0"; sha256="1fy0fpgz2k985brfqyza1l49y0w2j9z308n542pgmkzqsnsdscpw"; depends=[shape sp]; }; spnn = derive2 { name="spnn"; version="1.2.1"; sha256="1yj89j7nynfyw1ikm6q5kdwdgiiwxx0aa6kgnri5wfnb4l0356l7"; depends=[MASS Rcpp RcppArmadillo]; }; @@ -17486,7 +17707,7 @@ in with self; { springpheno = derive2 { name="springpheno"; version="0.5.0"; sha256="16pa56k1pbazv3vx5lhzc8n3pazrfh1q4bi7116bbvsdgpp9vs8g"; depends=[]; }; sprintr = derive2 { name="sprintr"; version="0.9.0"; sha256="0nnzjn7zrcgcmk3rs0hn56jcjrzrn5z0kc77bv4zzvbz5vr8gbwj"; depends=[glmnet Rcpp RcppArmadillo]; }; sprtt = derive2 { name="sprtt"; version="0.1.0"; sha256="1lj4qrn8ajl9lmx9qrcxrrd187khs3afvmf2hpwmakxfn6sajm0z"; depends=[]; }; - sps = derive2 { name="sps"; version="0.4.1"; sha256="0c576gwl8qn29cm18fgypsfprb2y3pc5a6ggs7i609phxlslb2x7"; depends=[Rcpp]; }; + sps = derive2 { name="sps"; version="0.5.0"; sha256="13ibs39msnjwcmik56632g53wyx872rrinzxyrydzmc54ks7my9p"; depends=[]; }; spsComps = derive2 { name="spsComps"; version="0.3.2.1"; sha256="0b4bai6yk6spcansjfnxd5328jlf46cjqqjj3f5dd2kph2rx4kqw"; depends=[assertthat crayon glue htmltools magrittr R6 shiny shinyAce shinytoastr stringr]; }; spsUtil = derive2 { name="spsUtil"; version="0.2.2"; sha256="1hhiz2bmgrvpadag1d4ljynk7mhwknaslja9hcmf665l2x3hzdl6"; depends=[assertthat crayon glue httr magrittr R6 stringr]; }; spselect = derive2 { name="spselect"; version="0.0.1"; sha256="02aiml4dh40n6yl52ypramn4847ykdi4y5lhsmchnnp4nnnqycsn"; depends=[magic pracma tester]; }; @@ -17494,12 +17715,13 @@ in with self; { spsi = derive2 { name="spsi"; version="0.1"; sha256="0q995hdp7knic6nca0kf5yzkvv8rsskisbzpkh9pijxjmp1wnjrx"; depends=[plot3D]; }; spsur = derive2 { name="spsur"; version="1.0.2.5"; sha256="0ar1b48r2hi50rvzkr432lpcc4c9r72hxkz74gip5gf12i7mx2ci"; depends=[Formula ggplot2 gmodels gridExtra MASS Matrix minqa numDeriv Rdpack rlang sparseMVN spatialreg spdep sphet]; }; spsurv = derive2 { name="spsurv"; version="1.0.0"; sha256="11jlbzvzxv3d1d0nwpbii46ddvphglrxv25rw7pvxbybcx2i7k6x"; depends=[BH coda loo MASS Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; - spsurvey = derive2 { name="spsurvey"; version="5.4.1"; sha256="08wfdbjs6q8anfq0rvynjypivr4fyk4k10ri25caiwcw5s42df0c"; depends=[boot crossdes deldir lme4 MASS sampling sf survey units]; }; + spsurvey = derive2 { name="spsurvey"; version="5.5.0"; sha256="19nfzw6ac394rn0w6zdn977mf4slxq0mpw2qj9r2ma7z0biwssxn"; depends=[boot crossdes deldir lme4 MASS sampling sf survey units]; }; spt = derive2 { name="spt"; version="2.5.1"; sha256="04j38d2b35p4798znnc49vqrg8r8bygwi07vybfj3nzimlp2mkrn"; depends=[]; }; sptm = derive2 { name="sptm"; version="2019.11-25"; sha256="1hdymzngdppmh56dqh0k88n9hg68pbx9rgmimbz4ihnfx2plvadh"; depends=[kyotil survey survival]; }; sptotal = derive2 { name="sptotal"; version="1.0.1"; sha256="09wkcc1lbc9d0m19ncqcb3xxgl30lyii6r5nqb9rbjqyf2jl2iak"; depends=[ggplot2 viridis]; }; spuRs = derive2 { name="spuRs"; version="2.0.2"; sha256="00c0hnyrcbkbj269czxbfgmgi88y0vxzm79sxclllkzr9rdd1p53"; depends=[lattice MASS]; }; spup = derive2 { name="spup"; version="1.3-2"; sha256="098zga5dm785v5k0s0ql6j17i6zbnka0yhfni4irlki3y1ndw78m"; depends=[gstat magrittr mvtnorm purrr raster sp whisker]; }; + sqlHelpers = derive2 { name="sqlHelpers"; version="0.1.0"; sha256="1h4mpssppicrxm4aga284q8z7dqzrdxzrh4sgnc5ylmgavzf29y9"; depends=[data_table DBI odbc stringi toolbox]; }; sqldf = derive2 { name="sqldf"; version="0.4-11"; sha256="0q12vsb53p2wchgp8wfz5bk08wfnm0jxjrakclj4jyy6x3a7ksff"; depends=[chron DBI gsubfn proto RSQLite]; }; sqliter = derive2 { name="sqliter"; version="0.1.0"; sha256="17jjljq60szz0m8p2wc5l56659aap7an5gknc848dp89ycjgj3zx"; depends=[DBI functional RSQLite stringr]; }; sqliteutils = derive2 { name="sqliteutils"; version="0.1.0"; sha256="0v7d52m9yvl5iadqnscgrcvniwhk7i7fmzd3gw23a0q4qxjs8iy9"; depends=[DBI dbplyr dplyr magrittr RSQLite]; }; @@ -17508,25 +17730,25 @@ in with self; { sqlstrings = derive2 { name="sqlstrings"; version="1.0.0"; sha256="147496898m4rqa63p72axw0g0a208pcy22mdhn0s7zv0j50lilc4"; depends=[fs readr stringr]; }; squant = derive2 { name="squant"; version="1.1.4"; sha256="1z4qi1svv6186gj3nh4z3hvjd54i7grj6ckgdyk4dmyn7zh8fw5w"; depends=[ggplot2 glmnet survival]; }; squash = derive2 { name="squash"; version="1.0.9"; sha256="1x66iamj5pir6l9aqx4x7xylxxjpjrw8vcix9rbhfd0y0y2iqf7z"; depends=[]; }; - squat = derive2 { name="squat"; version="0.1.0"; sha256="1sxdfqn18xfky3z1wxl82fb0c7glvhfm670xymgp4q3dri60a5r1"; depends=[cli dtw fdacluster funData furrr ggplot2 ggrepel MFPCA progressr purrr Rcpp RcppArmadillo RcppEigen roahd scales tibble tidyr]; }; squeezy = derive2 { name="squeezy"; version="1.1-1"; sha256="1dykp6hz056f9ajx1sg5bl89v4qmn41lsp9p9zzd9yib6d6ryfsm"; depends=[glmnet Matrix multiridge mvtnorm]; }; squid = derive2 { name="squid"; version="0.2.1"; sha256="1zpm787ifzrhww32ghi57ii37p9dssq7q7gbai9iqass78z90y2j"; depends=[arm brms data_table ggplot2 lme4 MASS plotly shiny shinyMatrix]; }; sr = derive2 { name="sr"; version="0.1.0"; sha256="0d8c7gsr48xxg7y09n0namzqp148bk4idz51d2d5xlmlzcyq74k8"; depends=[dplyr ggplot2 progress RANN vdiffr]; }; sra = derive2 { name="sra"; version="0.1.4"; sha256="1djnkcykslrnxpm1mqyqgik5pnp54m93ddycqx36vy58pcjrvag4"; depends=[]; }; srcr = derive2 { name="srcr"; version="1.1.0"; sha256="1cv4j27w9lssllih0lg172x1p001sk13p9hg39579lx6rpb9l75q"; depends=[DBI dplyr jsonlite]; }; - sregsurvey = derive2 { name="sregsurvey"; version="0.1.2"; sha256="1wsfjnkszxvx4pjgpi2v14s94d7rpl13pallja6rfcmsgxp3kc2l"; depends=[caret dplyr gamlss gamlss_dist magrittr TeachingSampling]; }; + sregsurvey = derive2 { name="sregsurvey"; version="0.1.3"; sha256="1wpqsjhj4vl8gzma4i9y75srzwl8zmkj55lmrhni7xar4d81mnb4"; depends=[caret dplyr gamlss gamlss_dist magrittr TeachingSampling]; }; srm = derive2 { name="srm"; version="0.4-26"; sha256="1cw0a0n1chnri6jmcav04qa52s8jakviwjpq1yx1x5z2ya978r26"; depends=[Rcpp RcppArmadillo]; }; srp = derive2 { name="srp"; version="1.2.0"; sha256="0xdzfvi7z78xmyxwd8fha3lr86jwmgjba1w8hhn4sv3v5gc9vlkh"; depends=[fda mgcv]; }; srt = derive2 { name="srt"; version="1.0.3"; sha256="0m94ycnrlgjvlx9jzb05rdg57yxwsw3p7zjih0m04vb1369j83q1"; depends=[]; }; srvyr = derive2 { name="srvyr"; version="1.2.0"; sha256="0c3y5ijcybf45f4f1bn95m364grsa0c8rf9l0p1jkcr74nmryx9d"; depends=[dplyr magrittr rlang survey tibble tidyr tidyselect vctrs]; }; ss3sim = derive2 { name="ss3sim"; version="1.0.3"; sha256="0s2yajlhi07fvqc0rr4msd9g2jrswb83dx55wsxnw925vikqa5kz"; depends=[bbmle foreach ggplot2 gtools r4ss]; }; + ssMRCD = derive2 { name="ssMRCD"; version="0.1.0"; sha256="16s7jpm9yik1l5s682hdrmh22hrxk5qzy31ls54g48125j8v96la"; depends=[car dbscan dplyr ggplot2 plot3D robustbase scales]; }; ssMousetrack = derive2 { name="ssMousetrack"; version="1.1.6"; sha256="014b1ylynn3l3k24p4zr001ys32ajrxxdpk3jwl0lmfm7r63as58"; depends=[BH CircStats cowplot dtw ggplot2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; ssaBSS = derive2 { name="ssaBSS"; version="0.1.1"; sha256="1sfhrp5y4hhnc417jq2vyk935iyicl58jbw4nwrj3rayh0ng7dbp"; depends=[BSSprep ggplot2 ICtest JADE tsBSS xts zoo]; }; ssanv = derive2 { name="ssanv"; version="1.1"; sha256="17a4a5azxm5h2vxia16frcwdyd36phpfm7fi40q6mnnrwbpkzsjd"; depends=[]; }; ssc = derive2 { name="ssc"; version="2.1-0"; sha256="1lq71p8hbjfg4a52009810k5dmhak9ddk1dywvhy7v2gjmxqnadw"; depends=[proxy]; }; sscor = derive2 { name="sscor"; version="0.2"; sha256="1kcrr90cxg6k4qkc3pidhkwf4dsnlgbxczxigr2afwpd9cpf104c"; depends=[mvtnorm pcaPP robustbase]; }; ssddata = derive2 { name="ssddata"; version="1.0.0"; sha256="0njcnjcgdghwrbjcbiq4yfn7nq9h4dvylrqh57c6vx35yqc4g375"; depends=[chk dplyr Rdpack]; }; - ssdtools = derive2 { name="ssdtools"; version="1.0.2"; sha256="0qnlawdb7y4wryp4ksp641bkv94hz1ymv6l79l3hmyqn0wy73g6m"; depends=[abind chk doFuture foreach furrr generics ggplot2 goftest lifecycle plyr purrr Rcpp scales ssddata stringr tibble TMB universals VGAM]; }; + ssdtools = derive2 { name="ssdtools"; version="1.0.4"; sha256="124laicy7xzy0v695w280vz16jdx09x3vccqmrbml5w495283kb4"; depends=[abind chk doFuture foreach furrr generics ggplot2 goftest lifecycle plyr purrr Rcpp RcppEigen scales ssddata stringr tibble TMB universals VGAM]; }; sse = derive2 { name="sse"; version="0.7-17"; sha256="0aqpi70rgmh2kmf11z2cvyl8c9klv8jm81pcpkzjrw3pbpgkqizf"; depends=[lattice]; }; ssev = derive2 { name="ssev"; version="0.1.0"; sha256="1iw07gw9vhg073s5kkxh5f1si6p998rc1i2zglnpk5c3pi3l55wp"; depends=[MESS pwr]; }; ssfa = derive2 { name="ssfa"; version="1.2"; sha256="14v10lbv3wlrnz3b2i8i56rj5rr257qvwa8w9j6xqswllb80132r"; depends=[Matrix maxLik sp spatialreg spdep]; }; @@ -17534,6 +17756,7 @@ in with self; { ssgraph = derive2 { name="ssgraph"; version="1.15"; sha256="1ya5pbdjsi34bqv8r89jc7pr7p0smq7bpwfllvzjrviq08r935nd"; depends=[BDgraph]; }; ssh = derive2 { name="ssh"; version="0.8.2"; sha256="14sasc28ipjdhb0k8ziby2v4n8gfmsp917y9725h6fsq0n01p002"; depends=[askpass credentials]; }; sship = derive2 { name="sship"; version="0.9.0"; sha256="0h0cbbvqfmik2z0qp34gym81p01x01yndymczb8vpqnj0nfnmyhc"; depends=[httr jsonlite openssl RCurl yaml]; }; + ssifs = derive2 { name="ssifs"; version="1.0.2"; sha256="17q1p4cgdwmn3vlhkc4p49j1222wd8d6dcp7n5ngvqcfjn3lrarh"; depends=[ggplot2 gtools igraph netmeta plyr R2jags Rdpack RevEcoR]; }; ssimparser = derive2 { name="ssimparser"; version="0.1.1"; sha256="01c9kbvdrkchf4rad9hysyflpkgdj294lbk94fc5pkc49fqznmrx"; depends=[airportr dplyr magrittr stringr tidyr]; }; ssize_fdr = derive2 { name="ssize.fdr"; version="1.3"; sha256="1yirk6sl72d99sznvr5hm1sn4766sfrw66hhffb9g88b19lfpprd"; depends=[]; }; ssizeRNA = derive2 { name="ssizeRNA"; version="1.3.2"; sha256="1qw10yswzpg28fhvr6rsq0gh7xivfapw64gxc0hakb1nc31jf8ky"; depends=[Biobase edgeR limma MASS qvalue ssize_fdr]; }; @@ -17547,44 +17770,44 @@ in with self; { ssrn = derive2 { name="ssrn"; version="0.1.0"; sha256="1s78wiyn6ff6f55cp5knhram6m61cbckdnzm9q6imrjwngjci6cx"; depends=[dplyr magrittr purrr rlang stringr tibble tidyr]; }; sss = derive2 { name="sss"; version="0.2.1"; sha256="134l6vl6lbd5n89mafjhwpd5xcr5hj56gifc0dxsbzz6m8q515g0"; depends=[assertthat xml2]; }; sssc = derive2 { name="sssc"; version="1.0.0"; sha256="00m5zfd3jnbxa8x76v4pfyl4qdfq90n8rqx4hngany0ka1z5g7m6"; depends=[changepoint e1071 ggplot2 VGAM]; }; - ssym = derive2 { name="ssym"; version="1.5.7"; sha256="0l5d921vlhd4qwddllrgcxpq3bhivvy5ikh3ixdy3s140rzpgwrv"; depends=[Formula GIGrvg normalp numDeriv sandwich survival]; }; + ssym = derive2 { name="ssym"; version="1.5.8"; sha256="06qmzlsk232d3vwzb7hjrbrfw0jn6br55v1nldjij3nl75c52xw7"; depends=[Formula GIGrvg normalp numDeriv sandwich survival]; }; st = derive2 { name="st"; version="1.2.7"; sha256="0j29k9fg8659yw1jwmcakiic51rin1dj1fmvpapy2wmz4c3pr0fp"; depends=[corpcor fdrtool sda]; }; stR = derive2 { name="stR"; version="0.5"; sha256="1nlb2d8a11kxiipv96sfmmcq185051vmdiwjjqayln143gvhzp7w"; depends=[foreach forecast Matrix quantreg SparseM]; }; - stRoke = derive2 { name="stRoke"; version="23.1.7"; sha256="03wis8w62436fwj8jxdqf5089b6axnlr066ic9raqrfidfn2jvbd"; depends=[dplyr ggplot2 gtsummary MASS rankinPlot tidyr]; }; + stRoke = derive2 { name="stRoke"; version="23.4.1"; sha256="05whcniqb9f8705bi9c7y39r6ymclh9s9zr7yhl66nkfclad0sn3"; depends=[calendar dplyr ggplot2 gtsummary lubridate MASS rankinPlot tidyr]; }; sta = derive2 { name="sta"; version="0.1.7"; sha256="00kv2gd0ar2j992cn7j516y3w9nx83ylxp35xrqg2n43z4kgsacs"; depends=[doParallel foreach geoTS mapview raster RColorBrewer trend]; }; staRdom = derive2 { name="staRdom"; version="1.1.25"; sha256="0cxcl9crw9cvbfzjwwqmxbcsq4q5zbwkb5warkkga6250nra0vkc"; depends=[cdom data_table doParallel dplyr drc eemR foreach GGally ggplot2 gtools matrixStats MBA multiway pracma R_matlab readr stringr tibble tidyr viridisLite zoo]; }; + stabiliser = derive2 { name="stabiliser"; version="1.0.6"; sha256="1zyqmj8s8x0h8dji50r3yhn3n3838vci81gm02p971px8x5wq9y8"; depends=[bigstep broom caret dplyr expss ggplot2 glmnet Hmisc knitr lme4 lmerTest matrixStats ncvreg purrr recipes rsample stringr tibble tidyr]; }; stability = derive2 { name="stability"; version="0.5.0"; sha256="0mz7ikfhpfbdcp72klq7fi4zfmx2w18gz46yhwywcc4dyi277m11"; depends=[dplyr ggfortify ggplot2 lme4 magrittr matrixStats reshape2 rlang scales tibble tidyr]; }; stabilo = derive2 { name="stabilo"; version="0.1.1"; sha256="0w67y0prqzaf4m135dldvd65p4xgx5cxknbydxfq8f6c968i2hrm"; depends=[ggplot2 pracma]; }; stable = derive2 { name="stable"; version="1.1.6"; sha256="194xsa291v5f0jya1c3aigbclg8cci427ffpb8brxamm6n57hf12"; depends=[rmutil]; }; stableGR = derive2 { name="stableGR"; version="1.2"; sha256="0aj7vhn8js2hmj2w6py0h79k0rfrjfb4wyr6y13lz796lgk06mnn"; depends=[mcmcse mvtnorm]; }; stabledist = derive2 { name="stabledist"; version="0.7-1"; sha256="0scar396wiq6wkbkvwp4qrxqc1m075y56p37i6iry5rw796p1i86"; depends=[]; }; - stablelearner = derive2 { name="stablelearner"; version="0.1-4"; sha256="0w0b0h25lzdmzly5q8z6fhk8cz24k9radjika857qczmy7vdafd0"; depends=[e1071 MASS party partykit randomForest ranger]; }; + stablelearner = derive2 { name="stablelearner"; version="0.1-5"; sha256="0a1fsy9hf63c1yfp4dallfsiknzsnhjl91yzqsgvni3gyx0vjykm"; depends=[e1071 MASS party partykit randomForest ranger]; }; stablespec = derive2 { name="stablespec"; version="0.3.0"; sha256="0m143cq0baj2lyakhr31mqk2lg78jzpdlpv2bhwz6bzzip7mqi22"; depends=[foreach ggm graph matrixcalc nsga2R polycor Rgraphviz sem]; }; stabm = derive2 { name="stabm"; version="1.2.2"; sha256="1vslidq2pzpwhsrsklghaqsdjjf4w4wqs2dng0p68zhrv5vlivhq"; depends=[checkmate Matrix]; }; stabreg = derive2 { name="stabreg"; version="0.1.2"; sha256="1jrxyv0d33vd9vdlj1cv1a2qdz8iqgr726f54dgazwsz3cpyy2ia"; depends=[numDeriv]; }; stabs = derive2 { name="stabs"; version="0.6-4"; sha256="1nf1yg14cgxrs4np1yghpzw1nczaslfv3rvf3918wrlzg0vp6l7q"; depends=[]; }; stackoverflow = derive2 { name="stackoverflow"; version="0.7.0"; sha256="0zv8bxzw4pgaa5ra8wsb9p7g8bwffdhc6gqsfrcs61zva7v9izc2"; depends=[]; }; - stacks = derive2 { name="stacks"; version="1.0.1"; sha256="1abd0h1nqxp4mmsgi6g6ki0j6v2gacq687d83zsixrx3vfvpwkn4"; depends=[butcher cli dplyr foreach ggplot2 glmnet glue parsnip purrr recipes rlang rsample tibble tidyr tune workflows workflowsets yardstick]; }; + stacks = derive2 { name="stacks"; version="1.0.2"; sha256="179jcgvsydkrg37yz01wj4x9fhvakpmmw2yl18m3aj2llf67ily8"; depends=[butcher cli dplyr foreach generics ggplot2 glmnet glue parsnip purrr recipes rlang rsample tibble tidyr tune vctrs workflows yardstick]; }; stacomiR = derive2 { name="stacomiR"; version="0.6.0.7"; sha256="1w44rvjikvj6fjansg0l06rrhym6icrv1fr8bpq9hrx3h870nrz8"; depends=[dplyr ggplot2 Hmisc intervals lattice lubridate magrittr mgcv pool RColorBrewer reshape2 rlang RPostgres scales stacomirtools stringr withr xtable]; }; stacomirtools = derive2 { name="stacomirtools"; version="0.6.0.1"; sha256="1hw1k0mjddw46j3aagry2mx43wak03kkx4zzxplgcafwks5bp82y"; depends=[DBI pool RODBC RPostgres xtable]; }; stagePop = derive2 { name="stagePop"; version="1.1-2"; sha256="0yaxdq0p47qkjwjrsj4vb8rif9ip2k0vjnvz1k87h1mcslkfzygs"; depends=[deSolve PBSddesolve]; }; stagedtrees = derive2 { name="stagedtrees"; version="2.2.1"; sha256="1hpli4zbqhswrnpzygg53zfw1rawmbj1cygvc4zprr37x0ijcjvv"; depends=[]; }; staggered = derive2 { name="staggered"; version="1.1"; sha256="0z9358qbgn637j8iz5qwr4nyrlvi9w85l325vxpc61mcwksx5ip8"; depends=[coop dplyr magrittr MASS purrr Rcpp RcppEigen reshape2 tidyr]; }; - stampr = derive2 { name="stampr"; version="0.2"; sha256="10mc71kgnw5712q2gvzd4bmjaw1879r7s599hfsjap21idqb2k2m"; depends=[deldir maptools raster rgdal rgeos sp spdep]; }; + stampr = derive2 { name="stampr"; version="0.3.0"; sha256="1vp9ks0fwnz7j1lwvjklys4ih0slhylzfm79kzvfbby9l3xq878j"; depends=[dplyr geosphere lwgeom rlang sf spdep]; }; stan4bart = derive2 { name="stan4bart"; version="0.0-6"; sha256="115mg6mffh0qyxjbd2y2q1j5b002rs23cslvwpgld4mi9ga3ld5s"; depends=[BH dbarts Matrix Rcpp RcppEigen RcppParallel]; }; standardize = derive2 { name="standardize"; version="0.2.2"; sha256="008nz9vf08qxwdsn373yzpmsw5lhbm6mpm6dlwyys58wq0bdvh28"; depends=[lme4 MASS stringr]; }; standartox = derive2 { name="standartox"; version="0.0.2"; sha256="03g07yfw1l0j2xqjl74pvidlrrv2ia2kmhb94asj5d5xq7hr1004"; depends=[data_table fst httr jsonlite]; }; + standby = derive2 { name="standby"; version="0.1.0"; sha256="05kn866ibk0a0ncbsmfb31nhj7cfdidd8smvnpyrvw9rjs8k37hv"; depends=[htmltools shiny]; }; stapler = derive2 { name="stapler"; version="0.7.1"; sha256="1bzhahn72fzm2bjpis76hphv8whnkp2jq8bm1qldadhng4z1nsak"; depends=[matrixStats RNifti]; }; - staplr = derive2 { name="staplr"; version="3.1.1"; sha256="0g3a13qndi4w35wq9bm0gb2b8v9svih9gbj5ymggqlcwz1dzywga"; depends=[assertthat glue rJava stringr XML]; }; stargazer = derive2 { name="stargazer"; version="5.2.3"; sha256="0ra284jxjb1n6sd3114zf5l5pjrb7m7j073k8bhnrx8wl549p3i0"; depends=[]; }; starm = derive2 { name="starm"; version="0.1.0"; sha256="0y580c6inmfix6agwd5nr340l3hjk2xxs95s468j5pghpjpb8rmv"; depends=[Matrix]; }; starma = derive2 { name="starma"; version="1.3"; sha256="07r0kyabhgbm2v39fcrw0qhxcxj9a9cb45g9chzcnn9qmvramcwx"; depends=[ggplot2 Rcpp RcppArmadillo scales]; }; starnet = derive2 { name="starnet"; version="0.0.6"; sha256="0gbg8svyj4nh846q7986ap7jjry599kb1348k9lifz19kvyr4rn4"; depends=[cornet glmnet Matrix survival]; }; starry = derive2 { name="starry"; version="0.1.2"; sha256="18dn18y5vs4fhj3jzm2zmvyx2wqakkrkppmggizz60vrarnaqp8i"; depends=[bslib car corrr dplyr ggplot2 magrittr shiny shinyjs shinyWidgets stringr]; }; - stars = derive2 { name="stars"; version="0.6-0"; sha256="0zwbsqp8bihcq5sjdw05pvbh4l9s68p0qw3ffkk0jphsipvy9za9"; depends=[abind classInt lwgeom rlang sf units]; }; + stars = derive2 { name="stars"; version="0.6-1"; sha256="19q44bs2w12lyim8gzfpgxfkp2cdf29cav4cv74vzsxrv8xdny0z"; depends=[abind classInt lwgeom rlang sf units]; }; starsExtra = derive2 { name="starsExtra"; version="0.2.7"; sha256="06l9rpgw1dmvvn3389zzqrq4y87192k4zzj7xgvwzrdlrcxsqdh7"; depends=[mgcv nngeo sf stars units]; }; starsTileServer = derive2 { name="starsTileServer"; version="0.1.1"; sha256="04z3xaijhgn5g10vvx19lya6v17ypcq00w4jlgkap3fafw61pqhn"; depends=[assertthat leaflet plumber png R6 rlang sf stars units]; }; - startR = derive2 { name="startR"; version="2.2.2"; sha256="09zdka2mgkqkanamza8izhn9xwdpmj91l88538zxm9ckbk2213kw"; depends=[abind bigmemory ClimProjDiags easyNCDF future multiApply PCICt s2dv]; }; starter = derive2 { name="starter"; version="0.1.13"; sha256="0i3gmslabm8zjp282g2qv5yy3iicpmjakvzdnb2qh3hd75l42sn7"; depends=[cli dplyr gert glue here R_utils renv rlang rstudioapi]; }; starticles = derive2 { name="starticles"; version="0.1.0"; sha256="11jmjsbzniyfnszfffhr78rqa588y77rlx2sbp92a3jpmcbx0h56"; depends=[bookdown knitr rmarkdown]; }; startup = derive2 { name="startup"; version="0.20.0"; sha256="1l03jmlhc32jbf6clxzdfxb0rinwl8sb67hikx6hzbk8k9x2xvc2"; depends=[]; }; @@ -17592,11 +17815,10 @@ in with self; { starvars = derive2 { name="starvars"; version="1.1.10"; sha256="1mq31g05ahpsmda2zrmkg1dlaqqk4c9hm9fjzhgrsxlg4j3klbbf"; depends=[doSNOW foreach ks lessR MASS matrixcalc optimParallel quantmod vars xts zoo]; }; starvz = derive2 { name="starvz"; version="0.7.1"; sha256="0j22605vh0fpf17l78i3x9q5xia9qx841sg7hxhcjybn7vfkafsj"; depends=[arrow BH data_tree dplyr ggplot2 gtools lpSolve magrittr patchwork purrr RColorBrewer Rcpp readr rlang stringr tibble tidyr yaml zoo]; }; starwarsdb = derive2 { name="starwarsdb"; version="0.1.2"; sha256="00n9qqw4lbfk698qgvw8i42sy3dv5i5fiiqma3zks4rr9yspkldq"; depends=[DBI duckdb magrittr tibble]; }; - stat_extend = derive2 { name="stat.extend"; version="0.2.1"; sha256="1qwjqnjds733xvxhby604yqvwlj1rkr3411diwzhbgwp89rhy11r"; depends=[sets]; }; statBasics = derive2 { name="statBasics"; version="0.2.0"; sha256="1yphfzwj8hmqsz1qfckb05xxjyyi9r6g6iqcl8n20bs5hgr3d2s9"; depends=[stringr tibble]; }; statGraph = derive2 { name="statGraph"; version="0.5.0"; sha256="0fd7jsngd8gihivnir3y58961kvbdd5g1m5gm1da91984qs7r9q1"; depends=[cluster doParallel foreach igraph MASS rARPACK]; }; statVisual = derive2 { name="statVisual"; version="1.2.1"; sha256="1cc9p9g8lzn0lgh793r977yhqbk89l74m443gnznjlfml69bfb21"; depends=[Biobase dplyr factoextra forestplot gbm GGally ggdendro ggfortify ggplot2 ggrepel glmnet gridExtra knitr limma magrittr pheatmap pROC pvca randomForest RColorBrewer reshape2 rmarkdown rpart_plot tibble tidyverse]; }; - statar = derive2 { name="statar"; version="0.7.4"; sha256="0jf2h8lkpiz8y525n38707jnwzv1ixfwmfr1hnv5ajqmxvnvd73r"; depends=[data_table dplyr ggplot2 lazyeval matrixStats rlang stringr tidyselect]; }; + statar = derive2 { name="statar"; version="0.7.5"; sha256="1rjl1k4xp1qlg9c568624cj1z4jv1vvi1zrxrkn48ydb0vivp7gm"; depends=[data_table dplyr ggplot2 lazyeval matrixStats rlang stringr tidyselect]; }; statcanR = derive2 { name="statcanR"; version="0.2.4"; sha256="0f0ampyjqp0kgbar8jsbxpx9039jmxgz236v63nqmy1cgkdfn0d4"; depends=[curl data_table dplyr DT ggplot2 httr qpdf qs readr reshape2 tibble]; }; statcheck = derive2 { name="statcheck"; version="1.4.0"; sha256="1hibrynbgsym4hma8isby8kwb8gab9d4bx7m43qj4zayrl6b8scx"; depends=[ggplot2 plyr rlang rmarkdown]; }; statcodelists = derive2 { name="statcodelists"; version="0.9.2"; sha256="0hn7fqsghfnly325b58m5q0ba9hvi1rc0lb4dwp2xm5lynjmsbs9"; depends=[]; }; @@ -17606,19 +17828,18 @@ in with self; { statespacer = derive2 { name="statespacer"; version="0.5.0"; sha256="18bir894yrbff5h5pbqr342xckb78zzb24x2yrv9ffhrl5dvyk5d"; depends=[Rcpp RcppArmadillo Rdpack]; }; statgenGWAS = derive2 { name="statgenGWAS"; version="1.0.9"; sha256="0isjzb83vwml654b1azgvnwiijpihdk24b3jamls976is359qvrv"; depends=[data_table ggplot2 Rcpp RcppArmadillo sommer]; }; statgenGxE = derive2 { name="statgenGxE"; version="1.0.5"; sha256="1kq5bin4k66d8l9l4z2b0gx6s8ick5fim0qcsjayvgip25gkxf5z"; depends=[emmeans ggplot2 gridExtra knitr lme4 statgenSTA xtable]; }; - statgenHTP = derive2 { name="statgenHTP"; version="1.0.6"; sha256="01xp6ipaf8w52kkq0p43qj12i0jd4i2a7lzkiyfv0y91c0j0hha4"; depends=[animation factoextra ggforce ggnewscale ggplot2 gridExtra LMMsolver locfit lubridate Matrix reshape2 scales spam SpATS]; }; + statgenHTP = derive2 { name="statgenHTP"; version="1.0.6.1"; sha256="1lhs72y9p98vas7iv1zgqb9zac6plzgv5lffccyg75r88784xn1s"; depends=[animation factoextra ggforce ggnewscale ggplot2 gridExtra LMMsolver locfit lubridate Matrix reshape2 rlang scales spam SpATS]; }; statgenIBD = derive2 { name="statgenIBD"; version="1.0.5"; sha256="0jiw3rivlmgg883m8jsjzq6gckb2vim4fx1kr1rb3r76i8q2p1ql"; depends=[data_table ggplot2 Matrix Rcpp RcppArmadillo stringi]; }; statgenMPP = derive2 { name="statgenMPP"; version="1.0.2"; sha256="1qpf9gic9671hr6zyj56sqwx9wl51qr6gj84rfssdla718h766im"; depends=[data_table foreach ggplot2 gridExtra LMMsolver Matrix scales spam statgenGWAS statgenIBD stringi]; }; statgenQTLxT = derive2 { name="statgenQTLxT"; version="1.0.1"; sha256="0i17xl4q0alyd2w4giynarv7wqhimvbd58chqrjxy4yyq419jzry"; depends=[data_table foreach Rcpp RcppArmadillo sommer statgenGWAS]; }; statgenSTA = derive2 { name="statgenSTA"; version="1.0.11"; sha256="0lashqhahmb0n01a1cy6clv95z5ypm5kgmdiwhvdvdq1l50cz92z"; depends=[emmeans ggplot2 ggrepel gridExtra knitr lme4 mapproj maps qtl rlang scales SpATS xtable]; }; - static = derive2 { name="static"; version="0.1.0"; sha256="1n9ijilh81w2fz4cyd4abjj7qam8q7rirmp8lni5cxsb4il0qbfa"; depends=[]; }; stationaRy = derive2 { name="stationaRy"; version="0.5.1"; sha256="1620fdlybn3hr96yngnp802imr9b7n90835lyyd86r2wn6psdzvl"; depends=[downloader dplyr lubridate lutz magrittr progress readr stringr tidyr]; }; stationery = derive2 { name="stationery"; version="1.0"; sha256="07kwlmambjv7njgpw1dhsm2zrv1lk6xj2k6a6psysjllrf5zz8ga"; depends=[knitr kutils rmarkdown]; }; statip = derive2 { name="statip"; version="0.2.3"; sha256="0kymc3ds1nx0h11ffmm3vmqr1w34gd0k788vf72x2v45h8c1ma2n"; depends=[clue rpart]; }; statisfactory = derive2 { name="statisfactory"; version="1.0.1"; sha256="0i5z9f1q7wi0qdgr0zj15x1q3jzavivnkwf07y5d1ch3nqxa4nqw"; depends=[omnibus rlist]; }; statmod = derive2 { name="statmod"; version="1.5.0"; sha256="1jbf07h0mnncn2qp4wcw5bnbvsw3lizpd3cg0cpb8mcxn3wkw76n"; depends=[]; }; statnet = derive2 { name="statnet"; version="2019.6"; sha256="17dj6vjnjyqrfhzjq1lys5b29j942kd15zffb69jidni3slf20q9"; depends=[ergm ergm_count network networkDynamic sna statnet_common tergm tsna]; }; - statnet_common = derive2 { name="statnet.common"; version="4.8.0"; sha256="1w26g7nzvmawm8jqd0hsjr8lz1jr4l565wzcbwqwpyvk0q9rkyfy"; depends=[coda]; }; + statnet_common = derive2 { name="statnet.common"; version="4.9.0"; sha256="1mrdzhxxrr6a0hwxczs40f8ppkdimlki1gbg6f3kv69s6rpdr1d4"; depends=[coda]; }; statnetWeb = derive2 { name="statnetWeb"; version="0.5.6"; sha256="1haf2kr1mwvaz4hlwla2ysbcy3sbfcg3i4hyiy9y6lcffvy4w9w0"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; }; statnipokladna = derive2 { name="statnipokladna"; version="0.7.2"; sha256="1n7gvr57c27ilxrnpmr0bz6hc0d39lp6rnn4dkqdwdapzyhfymq4"; depends=[cli curl dplyr httr jsonlite lifecycle lubridate magrittr purrr readr rlang stringi stringr tibble tidyr xml2]; }; statprograms = derive2 { name="statprograms"; version="0.2.0"; sha256="0m7px7fmpz2zzlfdi7rbllcjvcjp8iy94f6fa1w4xinh7vz3y6vq"; depends=[]; }; @@ -17626,7 +17847,7 @@ in with self; { statquotes = derive2 { name="statquotes"; version="0.3.1"; sha256="08xvnqbh0ax261hhgq1pkmcpvdcy44nhhmsxaapy9q8ppfvn7vi1"; depends=[stringr tidytext wordcloud]; }; stats19 = derive2 { name="stats19"; version="2.0.1"; sha256="1qjf0q952qffphia6h7haff764k9iiwm9lyw9h5jcga03q733myb"; depends=[readr sf]; }; stats4teaching = derive2 { name="stats4teaching"; version="0.1.0"; sha256="1i2v97k6c75096hp23zpffmdbajdzzkqp508p9dvw841vpx2wxdn"; depends=[asbio car clusterGeneration knitr MASS MVN nortest psych pwr rstatix]; }; - statsExpressions = derive2 { name="statsExpressions"; version="1.5.0"; sha256="0ryb6zc77v3b81dxyvdlwkhph0ynpabbi5mxmpq25alyb17c1y8c"; depends=[BayesFactor correlation datawizard dplyr effectsize glue insight magrittr parameters performance purrr rlang tibble tidyr withr WRS2 zeallot]; }; + statsExpressions = derive2 { name="statsExpressions"; version="1.5.1"; sha256="1lq4h3a8yr7wnmjkg2rgr8524vdpfacr73pv4wxj44dbg9yh8l3x"; depends=[afex BayesFactor correlation datawizard dplyr effectsize glue insight magrittr parameters performance PMCMRplus purrr rlang tibble tidyr withr WRS2 zeallot]; }; statsearchanalyticsr = derive2 { name="statsearchanalyticsr"; version="0.1.4"; sha256="0m2zv5sgv7w9yk6q7rwx8x2zy6xx5w0d6c9vynddr08pn4mdqjhs"; depends=[glue httr jsonlite lubridate purrr stringr tibble tidyr]; }; statsr = derive2 { name="statsr"; version="0.3.0"; sha256="138yjifz8q3dqcm3wbzn4sxdydwnqvwkz0h20r8ls3pijqh6fc2y"; depends=[BayesFactor broom cubature dplyr ggplot2 gridExtra knitr rmarkdown shiny tibble tidyr]; }; statswalesr = derive2 { name="statswalesr"; version="0.2.0"; sha256="03h0gq8ag51my5z8mw78rhbkksfpa7af8my6lb468wrcfv69k0gl"; depends=[curl dplyr httr jsonlite rlang]; }; @@ -17638,14 +17859,13 @@ in with self; { stdvectors = derive2 { name="stdvectors"; version="0.0.5"; sha256="0gxylknr146qyg9aj22md076cdhrsz75dg25a1hx8525cm71nwd6"; depends=[Rcpp]; }; steadyICA = derive2 { name="steadyICA"; version="1.0"; sha256="0mcalbsgajdpk45k9vpyavn079063hw4ihkw72n9wcy5nb0da14g"; depends=[clue combinat MASS Rcpp]; }; steepness = derive2 { name="steepness"; version="0.3-0"; sha256="1lv2n4s8dj7axsmwmpfp4aw6v530r7437f44533pbx6p4n71hpzl"; depends=[]; }; - stelfi = derive2 { name="stelfi"; version="0.0.1"; sha256="0rjkvrn3vwd4mzb2042syfhds4za4cqqlhjs6l95d09rn1q7nahx"; depends=[dplyr ggplot2 gridExtra Matrix RcppEigen sf TMB]; }; + stelfi = derive2 { name="stelfi"; version="0.0.2"; sha256="0zx1x5kk8ans068j4zddsip6v04bsw6npagayjfa3sdl79ailqha"; depends=[dplyr ggplot2 gridExtra Matrix RcppEigen sf TMB]; }; stellaR = derive2 { name="stellaR"; version="0.3-4"; sha256="0spn25fbsfswx2rshzk34pqkicynyl256a4f7xrh51bhyh9qff44"; depends=[]; }; stemmatology = derive2 { name="stemmatology"; version="0.3.2"; sha256="1l2y4jlszz1dnafdl2wqqfgdjis07i3gzfnp1v1af32pvjy4zqhw"; depends=[cluster igraph xml2]; }; stenR = derive2 { name="stenR"; version="0.6.9"; sha256="19vn7123wys1jqrm4y8f6b4kvwygi1ql6ady2d5jz93vf29ihdzj"; depends=[cli data_table dplyr moments R6 rlang]; }; stencilaschema = derive2 { name="stencilaschema"; version="1.0.0"; sha256="117vl2h78ndnb70s8mpd0bs1n6h1vizv4wzn6g4y9j12ma63nldb"; depends=[]; }; stepPenal = derive2 { name="stepPenal"; version="0.2"; sha256="08gizl6c606ibbv7x2rdvfw37rghkrprwszha79yngkzpajw8gql"; depends=[caret dfoptim glmnet mvtnorm pROC]; }; stepPlr = derive2 { name="stepPlr"; version="0.93"; sha256="1i54nyz8z5vq3mzfh6h2vd1q0hsdazc4mhrj9ad0zdvn0qnz61lv"; depends=[]; }; - stepR = derive2 { name="stepR"; version="2.1-4"; sha256="18n368q7kc6q46ilvsvzjlrnlc93dgz01dzi4n10cn9sa2cvk496"; depends=[digest lowpassFilter R_cache Rcpp]; }; stepSplitReg = derive2 { name="stepSplitReg"; version="1.0.3"; sha256="04ks599bb3rbyc81kyakj6nmj7i8fvkb1pild0gd3i6j84j70071"; depends=[nnls Rcpp RcppArmadillo SplitGLM]; }; stepdownfdp = derive2 { name="stepdownfdp"; version="1.0.0"; sha256="1yqzxn4d52ih03f0mpvb9dw9pn9jfbgnyay1pfhh112zml5h6i3m"; depends=[pracma]; }; stepgbm = derive2 { name="stepgbm"; version="1.0.1"; sha256="1wcc4m9alphacdf9df5z29hz881625czxpyq93kzwc0nhnvz2gp0"; depends=[spm steprf]; }; @@ -17675,8 +17895,8 @@ in with self; { stmCorrViz = derive2 { name="stmCorrViz"; version="1.3"; sha256="1a4pckrbzsihyf1bqvw3cl0hxrc4yq1pnkgxgf4b8jday6zkxwcv"; depends=[jsonlite SnowballC stm tm]; }; stmgp = derive2 { name="stmgp"; version="1.0.4"; sha256="1yf0hr5gaql424ikjm9ra50vz4ppfsshhf89xphl7c9v9a6bjvw0"; depends=[MASS]; }; stmgui = derive2 { name="stmgui"; version="0.1.6"; sha256="1fn2m5l7y3p1riw39g6r3hpjxdccygih7yipp7dvc4msl9fm4h5c"; depends=[markdown shiny shinyBS shinyjs shinythemes stm tm]; }; - stminsights = derive2 { name="stminsights"; version="0.4.1"; sha256="1ll2chjz9r08lya2z7dnxjqdnwrvw7jn05mpvvxi1w8s2npsggib"; depends=[dplyr ggplot2 ggraph ggrepel huge igraph purrr readr scales shiny shinyBS shinydashboard shinyjs stm stringr tibble tidygraph]; }; - stoRy = derive2 { name="stoRy"; version="0.2.0"; sha256="1mxnnmg6wqp40hyh2mjd39vpzks78rr59pdlyxljlpnlslgkf1md"; depends=[cli crayon dplyr fansi httr lifecycle purrr R6 rappdirs readr rlang stringr tibble tidyjson tidyr]; }; + stminsights = derive2 { name="stminsights"; version="0.4.2"; sha256="1a0wglrsl5sr7fc6vhiwva0lmr0ac3ns4rfis2y8ib2vxxwhwb8j"; depends=[dplyr ggplot2 ggraph ggrepel huge igraph purrr readr scales shiny shinyBS shinydashboard shinyjs stm stringr tibble tidygraph]; }; + stoRy = derive2 { name="stoRy"; version="0.2.1"; sha256="1lxz3354kl3i71v5wnbgxxd4sv9vj8rj9vvbp67j4vq3pxy4z4q6"; depends=[cli crayon dplyr fansi httr lifecycle purrr R6 rappdirs readr rlang stringr tibble tidyjson tidyr]; }; stocc = derive2 { name="stocc"; version="1.31"; sha256="0d0n9nrcva0vradippq30y6dc6klwd1mllnzpnzq9rczpz5cw7mw"; depends=[coda fields Matrix rARPACK truncnorm]; }; stochLAB = derive2 { name="stochLAB"; version="1.1.2"; sha256="1gixw8rjhivcz71ypmbn0cs27gi5bsmmm37nsx0psas7nvw8zwxi"; depends=[cli dplyr glue logr magrittr msm pracma purrr rlang tibble tidyr]; }; stochQN = derive2 { name="stochQN"; version="0.1.2-1"; sha256="1lfzivl745dj94kap103arz0zy75wk69kc6v84xaaxk7ad3icnaj"; depends=[]; }; @@ -17684,14 +17904,14 @@ in with self; { stochvol = derive2 { name="stochvol"; version="3.2.1"; sha256="074paxqjbjsxd22nrwmfqwv0799q5wgknp6vdqy74qp8a5svgdq1"; depends=[coda Rcpp RcppArmadillo]; }; stochvolTMB = derive2 { name="stochvolTMB"; version="0.2.0"; sha256="07m3qz8j1sw37lrxzmbkbifd3nsdvd2blbca8vr1aq5bbafr1g1b"; depends=[data_table ggplot2 MASS RcppEigen sn TMB]; }; stockAnalyst = derive2 { name="stockAnalyst"; version="1.0.1"; sha256="1pqghpyvwylc00hcnqgcr03js3dz6id012ixn5gj3d3wqyh008bl"; depends=[]; }; - stockR = derive2 { name="stockR"; version="1.0.74"; sha256="002i0bhyskwyjjczfa752ghn19hvqhdyzdfkpvci3hb66rh94x65"; depends=[gtools RColorBrewer]; }; + stockR = derive2 { name="stockR"; version="1.0.76"; sha256="1n1xnz97x82bc9n930cwm11sl8r40224psya5z29a2zp449a5540"; depends=[gtools RColorBrewer Rcpp]; }; stockfish = derive2 { name="stockfish"; version="1.0.0"; sha256="1il3na3d96k34vj62pvxrs2ah3a9ly8ww3gi3nr0459piw4wd611"; depends=[processx R6]; }; stocks = derive2 { name="stocks"; version="1.1.4"; sha256="0b6rl7pfkgzbpwnv7zzkr36hs5f1zb60d16ijslf7g9m25vvcyg6"; depends=[dvmisc Hmisc lubridate quantmod rbenchmark RColorBrewer Rcpp TTR zoo]; }; stoichcalc = derive2 { name="stoichcalc"; version="1.1-4"; sha256="06q35faqrcarx6n00i5s45ynpwi6n6xizyr8w9c436c4ahg0xvyh"; depends=[]; }; stokes = derive2 { name="stokes"; version="1.1-8"; sha256="0xmmvmjggpqb3qs4rjz6fsmcxl8b6as82abln5n8k62qjj77lhr7"; depends=[disordR mathjaxr partitions permutations spray]; }; - stopdetection = derive2 { name="stopdetection"; version="0.1.1"; sha256="07l2rr047p0hpvgmr7c5x0by456n107r9d0qj4xrrigq5i6srrqk"; depends=[data_table geodist lubridate]; }; + stopdetection = derive2 { name="stopdetection"; version="0.1.2"; sha256="0hgz18fiqp6ykv9h711fbjx234cjiwa6gifdgg460b0pib8hc66i"; depends=[data_table geodist lubridate]; }; stopp = derive2 { name="stopp"; version="0.1.0"; sha256="06f0pahgnmy0vc1xggakzcwnc7858lhjfwxbcvfzsrr0xkd5c8mb"; depends=[etasFLP fields gmp KernSmooth latex2exp MASS optimx plot3D sparr spatstat_explore spatstat_geom spatstat_linnet spatstat_model spatstat_random splancs stlnpp stpp]; }; - stoppingrule = derive2 { name="stoppingrule"; version="0.1.0"; sha256="045z4bfvqkf62bmm4zaifl34hbcd191jv77s8ddbv1a7nqc52ds1"; depends=[]; }; + stoppingrule = derive2 { name="stoppingrule"; version="0.2.0"; sha256="0slrkzaj52cxv948djf9kkk60qrimjy6dn1mfzhv3vccs18kap1q"; depends=[]; }; stops = derive2 { name="stops"; version="1.0-1"; sha256="12zc338wh78an1nsmqr7sbfcr96yrb6xqzg9miwlb58sv28hm8i3"; depends=[acepack clue cmaes cordillera dfoptim DiceKriging DiceOptim energy MASS minerva nloptr pomp pso rgl scagnostics scatterplot3d smacof tgp vegan]; }; stopwords = derive2 { name="stopwords"; version="2.3"; sha256="1ci1cgxrcvlhhplximsfv0plvjdbcd5kv0nphxnpildsn5m1rv65"; depends=[ISOcodes]; }; storr = derive2 { name="storr"; version="1.2.5"; sha256="0qszdq16bf0dbss33zi63ciwmkgjsyc0c3akrr2kl14w3ncw6922"; depends=[digest R6]; }; @@ -17733,8 +17953,8 @@ in with self; { stringformattr = derive2 { name="stringformattr"; version="0.1.2"; sha256="0x56k30clj5ajk0qg5sr8b9l0asz6ldivwr1ddy1vp1djliih1fx"; depends=[stringr]; }; stringi = derive2 { name="stringi"; version="1.7.12"; sha256="02g0464sbprrbjlacx727p9ad1s5nbxl2mnvfmm9h7q000lsrs7g"; depends=[]; }; stringr = derive2 { name="stringr"; version="1.5.0"; sha256="0fk34ql5ak57f06l10ai300kxay6r7kkkyfanh8r24qaf3bmkcaj"; depends=[cli glue lifecycle magrittr rlang stringi vctrs]; }; - stringstatic = derive2 { name="stringstatic"; version="0.1.0"; sha256="01rkjdaw30fj4yk3skpyxdzflnmf20j52vxjbnj7bgm3yj7d1fmw"; depends=[]; }; - stringx = derive2 { name="stringx"; version="0.2.4"; sha256="1l87y6akq3a6fv1s7imn5g3rsmsbijqk6a3gcfws1i1g59ripznx"; depends=[stringi]; }; + stringstatic = derive2 { name="stringstatic"; version="0.1.1"; sha256="1naj3in8w0h36rnwal5qad3gckiw14xf16k08yhlwip2xkyifxxb"; depends=[]; }; + stringx = derive2 { name="stringx"; version="0.2.5"; sha256="0h6j67krpk1yr0qiq76grlw1dwdxzj1h61fvlbah86k444mfg91a"; depends=[stringi]; }; strip = derive2 { name="strip"; version="1.0.0"; sha256="1j3kq6w8k66z45rpd1cgxplpnldzbyqklgs4bnbv906pyd8wk9ak"; depends=[rlist]; }; stripless = derive2 { name="stripless"; version="1.0-3"; sha256="08mdp7kq6r5bk77j09477d1dnn7iwa346pr24b5bqsxwnbknyrsr"; depends=[lattice]; }; striprtf = derive2 { name="striprtf"; version="0.5.3"; sha256="0dqcsh3fb8j0mmmxvxjl77rryhmrjm7a3scqvk2xkgxk4xq6q316"; depends=[magrittr Rcpp stringr]; }; @@ -17746,8 +17966,7 @@ in with self; { studentlife = derive2 { name="studentlife"; version="1.1.0"; sha256="1xvlcwg7ckxsm5hb5ax8r3hzdqnx61ax59ini5xc5jrsmir13g67"; depends=[crayon dplyr ggplot2 jsonlite purrr R_utils readr skimr tibble tidyr visdat]; }; studyStrap = derive2 { name="studyStrap"; version="1.0.0"; sha256="0lvzqnq40j0xn74qrj0pqhr8zz34mbhfd7dg8bnadscsvj5ffm4c"; depends=[caret CCA dplyr MatrixCorrelation nnls pls tibble tidyverse]; }; stxplore = derive2 { name="stxplore"; version="0.1.0"; sha256="1bnpp53s7r8ghvbxvnlk103h66a55xf7y9fcdhvmfgf31d2x5dsd"; depends=[fields ggmap ggplot2 ggridges gridExtra gstat lubridate magrittr RColorBrewer rlang sp spacetime stars tidyr]; }; - styler = derive2 { name="styler"; version="1.9.1"; sha256="1fyhvqimiysrmcqd126cjxvlwy6msj3v1d90r1g681zhcb0a63y8"; depends=[cli magrittr purrr R_cache rlang rprojroot vctrs withr]; }; - stylest = derive2 { name="stylest"; version="0.2.0"; sha256="1c036zsn1gi5vhsz37p56wz1bcr3pwdp2k62j7ikmrrnkcv2w9kz"; depends=[corpus Matrix]; }; + styler = derive2 { name="styler"; version="1.10.0"; sha256="1zaxwhcgfasrchg2qcrr3i9scyvz57g363q77d39zrz69yk363ic"; depends=[cli magrittr purrr R_cache rlang rprojroot vctrs withr]; }; stylo = derive2 { name="stylo"; version="0.7.4"; sha256="0vjfpz4bpdrsax7a0gsj9cwddbsayb4n5fr5xskz63lfrjg2ppcb"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; }; suRtex = derive2 { name="suRtex"; version="0.9"; sha256="0xcy3x1079v10bn3n3y6lxignb9n3h57w4hhrvzi5y14x05jjyda"; depends=[]; }; subcopem2D = derive2 { name="subcopem2D"; version="1.3"; sha256="06wwd847g9pxd0z2a8494h3nc9s280a3s1510bir24m3z7w1pqf3"; depends=[]; }; @@ -17782,7 +18001,6 @@ in with self; { summclust = derive2 { name="summclust"; version="0.6.0"; sha256="0qvr0y2lmpqvk0q14kg6z6qy79bnmv6yinqklznrlw2y1yncx5nj"; depends=[cli collapse dreamerr generics MASS]; }; sunburstR = derive2 { name="sunburstR"; version="2.1.8"; sha256="1rlfmw79krdahm7c03xw1hbzmxvaqbghl90bqiqa66k7mn9d25z6"; depends=[d3r dplyr htmltools htmlwidgets]; }; suncalc = derive2 { name="suncalc"; version="0.5.1"; sha256="1xkci2sbcf5x1wn2jqzbfzc5dly331dhihrxjlmdiic247blwqyp"; depends=[data_table lubridate magrittr]; }; - sundialr = derive2 { name="sundialr"; version="0.1.4.1"; sha256="1ln8zbihxfa7dnbhrm254l8qzdw16fhva58p5bd0p8j43grq6qrv"; depends=[Rcpp RcppArmadillo]; }; supc = derive2 { name="supc"; version="0.2.6.2"; sha256="0gvrmhvjkfbgi0ivwa8ri69rxj4kqn3xqrc2d5rfrdfm9jmqb56h"; depends=[BH Rcpp]; }; supclust = derive2 { name="supclust"; version="1.1-1"; sha256="1iar957gdarp1m677fjmph0ll8zsqiy2bzkzx03gv37k56w1acpd"; depends=[class rpart]; }; supcluster = derive2 { name="supcluster"; version="1.0.1"; sha256="131s9q4p2lzs09q5zc702pafnisk1aylq9i52wk27hvpcsh0v1pc"; depends=[gtools mvtnorm]; }; @@ -17808,6 +18026,7 @@ in with self; { sure = derive2 { name="sure"; version="0.2.0"; sha256="0gwr2j321i2vq98rin5b1m4sl123dm1nih1ghcmj0zd1wd6x5x54"; depends=[ggplot2 goftest gridExtra]; }; sureLDA = derive2 { name="sureLDA"; version="0.1.0-1"; sha256="09ls5gv9jip2pw38qw3v2ag91fgmmkq989pyr8c8j92nbwk6i3hr"; depends=[doParallel foreach glmnet MAP Matrix pROC Rcpp RcppArmadillo]; }; surface = derive2 { name="surface"; version="0.5"; sha256="1fw75543aa6yafldffh9cnpm6m0rif0fpcihwj56d7nfnkbslawz"; depends=[ape geiger MASS ouch]; }; + surrosurv = derive2 { name="surrosurv"; version="1.1.26"; sha256="1zkrbc71n06i0fccrv5f15rnkbp3cb8lnizh4z16mmqgvn35hg1j"; depends=[copula eha lme4 MASS Matrix msm mvmeta optimx parfm survival]; }; surrosurvROC = derive2 { name="surrosurvROC"; version="0.1.0"; sha256="1dpqr9dqzckgvdfrb2ndxazra0lbp6db9wbjch4vig3kyz6nyw4y"; depends=[survival]; }; surv2sampleComp = derive2 { name="surv2sampleComp"; version="1.0-5"; sha256="0pk70q33il9clz0ikzx1cypg5ygnsqp5hgk67xczzbidksjzs4dn"; depends=[flexsurv plotrix survival]; }; survAH = derive2 { name="survAH"; version="1.0.0"; sha256="1cs3h2gc7i5lpy98lq6vi70k207x42nl1swdp5qs602zfbivx56k"; depends=[survival]; }; @@ -17831,10 +18050,10 @@ in with self; { survSens = derive2 { name="survSens"; version="0.1.0"; sha256="1s4s5l31yps93s2zdxpidkdg8kmmwj6vb3zfndmnxvc07arwhvbv"; depends=[directlabels ggplot2 survival]; }; survSpearman = derive2 { name="survSpearman"; version="1.0.1"; sha256="1b6nj2ikf931926a47a441icbrfjcadwxxnkc35c9yz8nw1kn1ii"; depends=[]; }; surveil = derive2 { name="surveil"; version="0.2.1"; sha256="1b7nwp3rmvbnaw6l2pjhfia864cirpfhn2smib5c4zl2h9282rjk"; depends=[BH dplyr ggdist ggplot2 gridExtra Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidybayes tidyr]; }; - surveillance = derive2 { name="surveillance"; version="1.21.0"; sha256="17k5fxdr4cfgigvq03701z4assnx20xkq329mw2avv2dvic0mybn"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat_geom xtable]; }; + surveillance = derive2 { name="surveillance"; version="1.21.1"; sha256="1a33n91pp53rdfdr96d9sim00xr3bp6diaiqbc97zvri6ib35j8z"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat_geom xtable]; }; survex = derive2 { name="survex"; version="1.0.0"; sha256="1xvznffkbdgixw814k5w0q5d13mzibm7z5djbb8dcq0yycnmkh3y"; depends=[DALEX ggplot2 kernelshap patchwork pec survival]; }; survexp_fr = derive2 { name="survexp.fr"; version="1.1"; sha256="0ci65w3w06kwab98q9gb7nb7smq9r25qfibkgfilsg1i5li6p9h5"; depends=[survival WriteXLS]; }; - survey = derive2 { name="survey"; version="4.1-1"; sha256="0ljsszybzri531q6xab04r6zq11vchfs7y0snjzk57m3g0b9ms05"; depends=[lattice Matrix minqa mitools numDeriv survival]; }; + survey = derive2 { name="survey"; version="4.2-1"; sha256="0l7iml53k2blmcgvbvplln08fn2s6da856m5izcvw87v6bhn2g6c"; depends=[lattice Matrix minqa mitools numDeriv survival]; }; surveyCV = derive2 { name="surveyCV"; version="0.2.0"; sha256="183ybmfin4xmpsmssw7hskj1rgwpabpa616bzxlir27kygyrswbz"; depends=[magrittr survey]; }; surveybootstrap = derive2 { name="surveybootstrap"; version="0.0.3"; sha256="1ci6gqs1kiizpmddkw9r5nsq9wqdhha3kxhnn6b28fczrsypilf8"; depends=[dplyr functional plyr purrr Rcpp RcppArmadillo stringr]; }; surveydata = derive2 { name="surveydata"; version="0.2.7"; sha256="0wrp92j50a19is4xvh5s82zkp3rvn46gi2344pxinppfax0kjf2h"; depends=[assertthat dplyr DT ggplot2 magrittr purrr rlang scales tidyr]; }; @@ -17850,6 +18069,7 @@ in with self; { survivalMPL = derive2 { name="survivalMPL"; version="0.2-3"; sha256="1dxn9s68f545chqg1kfdys0gr419w259b1156g92mql899fm77sq"; depends=[MASS survival]; }; survivalMPLdc = derive2 { name="survivalMPLdc"; version="0.1.1"; sha256="1wqlzpwm1p7nq19l3d7c93zv6fnn0b1w24kak9zwsgyhar3f5lv9"; depends=[copula matrixcalc splines2 survival]; }; survivalROC = derive2 { name="survivalROC"; version="1.0.3.1"; sha256="0p6irjs8a9xxgxwax0y9fzapcib237if3iy8g6lzv793mzmsyx41"; depends=[]; }; + survivalSL = derive2 { name="survivalSL"; version="0.9"; sha256="06dnypi4b3afg4adwcfkhr6in9wica0vf9b1cz4ais5cb929fiar"; depends=[caret cubature date flexsurv glmnet glmnetUtils hdnom kernlab MASS mosaic mosaicCalc nnet prodlim randomForestSRC reticulate rpart SuperLearner survival survivalmodels timeROC tune]; }; survivalmodels = derive2 { name="survivalmodels"; version="0.1.13"; sha256="0d5bfmvfwf3i1iim5cjrqq5vlja92znpzv1csrk488rb582zaza7"; depends=[Rcpp]; }; survivalsvm = derive2 { name="survivalsvm"; version="0.0.5"; sha256="1b4hrdrqq1z0kfn8vpdwg54388m25df2s6w9i574x3mkxkmkjkga"; depends=[Hmisc kernlab Matrix pracma quadprog survival]; }; survivoR = derive2 { name="survivoR"; version="2.0.8"; sha256="080pm2479vfhv1hizalcnn2xcqv5n5v4ry42z1a5n5zs13qma947"; depends=[ggpath ggplot2 glue magrittr prismatic stringr tidyr]; }; @@ -17857,6 +18077,7 @@ in with self; { survmixer = derive2 { name="survmixer"; version="1.3"; sha256="00s06h7nn8li4d2kn4yzlnj3px1wkpvnx5w73y98cvrcwm0ad71g"; depends=[]; }; survout = derive2 { name="survout"; version="0.1.0"; sha256="1ypxhdirppr6061zk1is473b8k8yy3m14ij4fa66rczs8gqy5sj2"; depends=[cmprsk dplyr openxlsx survival tibble]; }; survsim = derive2 { name="survsim"; version="1.1.8"; sha256="0gv54bd94a6vdz8li0j409qv7r0h4d681l1p9hj9ilzk7y5bfm70"; depends=[eha statmod]; }; + survstan = derive2 { name="survstan"; version="0.0.1"; sha256="1f32hgv29k0v9dvsa7j1r2srpz83w167x95n3cf8065pk29jw2da"; depends=[actuar BH dplyr ggplot2 gridExtra Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools StanHeaders survival tibble]; }; susieR = derive2 { name="susieR"; version="0.12.35"; sha256="0fhdc3lkhl4s9h2ng72gypy2z3hgk6566jfhwhsfbddyzd22drpd"; depends=[crayon ggplot2 Matrix matrixStats mixsqp reshape]; }; svDialogs = derive2 { name="svDialogs"; version="1.1.0"; sha256="0z3a5glsi0ab43mdk2yvslxyzg12nbqqqc35jvgzj475mpkbgjif"; depends=[rstudioapi svGUI]; }; svDialogstcltk = derive2 { name="svDialogstcltk"; version="1.0.0"; sha256="03rxw1m1ixisj0z9csmn3xff3rl1wqdvkcl1x7kmx64d0x6jwyfy"; depends=[svDialogs svGUI]; }; @@ -17880,7 +18101,7 @@ in with self; { svines = derive2 { name="svines"; version="0.1.4"; sha256="1piin3nn0z5k9gilcq4lcqj86dqlfm9xqp87cslwypkfkkhn2aia"; depends=[assertthat BH fGarch Rcpp RcppEigen RcppThread rvinecopulib univariateML wdm]; }; svmpath = derive2 { name="svmpath"; version="0.970"; sha256="19b5hfqqsh072l5mbkafm5pjd6qhyj20qd2vq6zl5jjmc45r72w1"; depends=[kernlab]; }; svplots = derive2 { name="svplots"; version="0.1.0"; sha256="0fa3mnsdaz85dy7rr6w454z516simj1zrf08sfbm05rp6jr3c7ws"; depends=[ggplot2]; }; - svrep = derive2 { name="svrep"; version="0.5.0"; sha256="0f9w7g6kl5mwmz88gnsvabi4l26cgyr1fg65rgdrapwbngyfkqib"; depends=[mvtnorm survey]; }; + svrep = derive2 { name="svrep"; version="0.5.1"; sha256="1wg3wrxvmq9ywnv2g8gghgg4bq0v7if5l80x3qsz24h31dxnqc05"; depends=[mvtnorm survey]; }; svrpath = derive2 { name="svrpath"; version="0.1.2"; sha256="18h40555jmqpbsnhlwkvc5fl7d0r2bgscdv8amjvhjxmx9y952a2"; depends=[quadprog svmpath]; }; svs = derive2 { name="svs"; version="3.0.0"; sha256="1jn3dbaqpgydkwf9y7hq97nva26vvrpl9zmw2bw4ky1qgzgz1ypb"; depends=[gtools Matrix]; }; svyVGAM = derive2 { name="svyVGAM"; version="1.2"; sha256="01y372p52xjd7j20xk5gwxkl8sfnwdvixx3pb3f6r407ca7l330h"; depends=[survey VGAM]; }; @@ -17892,12 +18113,13 @@ in with self; { swag = derive2 { name="swag"; version="0.1.0"; sha256="1w6schbj5gw7278krjzkcwafz3wv7vp7cfsvy17c0i1b5g3qqkpd"; depends=[caret Rdpack]; }; swagger = derive2 { name="swagger"; version="3.33.1"; sha256="1ldgmy5vjzd11z5yl5a518wkw6y0l469b2zf0lp12hk19jq6k0sj"; depends=[]; }; swamp = derive2 { name="swamp"; version="1.5.1"; sha256="1mj6cqrc19p07v051fg6ikhhbccsg2lvz7wjiakaswqqm0269843"; depends=[amap gplots impute MASS]; }; + swaprinc = derive2 { name="swaprinc"; version="1.0.1"; sha256="0r90w387chh4xgqn7jfi2wawsgr8faansp94hrp4vkhdmbbsb86z"; depends=[broom broom_mixed dplyr Gifi lme4 magrittr rlang tidyselect]; }; swatches = derive2 { name="swatches"; version="0.5.0"; sha256="1kivscgka8gn44rjj0s5sjan1s04znnyn0nd37a74zaik0hm8zs0"; depends=[colorspace httr pack stringr xml2]; }; swdft = derive2 { name="swdft"; version="1.0.0"; sha256="0529rw8nsl48hwiy741alvrzg5d5q1nhnjshrsfwchm5kdv0igva"; depends=[]; }; swdpwr = derive2 { name="swdpwr"; version="1.7"; sha256="0mljayrs629d0pxbd9lzzplvs31i33fqb0bfb01ryvwyv0ckwjx9"; depends=[spatstat_random]; }; sweater = derive2 { name="sweater"; version="0.1.7"; sha256="03fq3vbcvbv8fwdp6smxyzb5gj8qp03qf88l99f2na9bax302sr3"; depends=[cli combinat data_table LiblineaR proxy purrr quanteda Rcpp]; }; sweidnumbr = derive2 { name="sweidnumbr"; version="1.4.2"; sha256="0zzjvwd60w9b5ybsb72aqa42sx6al4ymr591j3zryxgpl6rms5rh"; depends=[checkmate lubridate stringr]; }; - swephR = derive2 { name="swephR"; version="0.3.0"; sha256="0fk5wih3i5vpkcc9y1n30xwc1hyqgfgnad9jkdgdx0m31pn1y9j5"; depends=[Rcpp]; }; + swephR = derive2 { name="swephR"; version="0.3.1"; sha256="10ra6m8arjpgypj15diailnrkgrvkxl3v0xji7v29ci7n03xa46r"; depends=[Rcpp]; }; swfscAirDAS = derive2 { name="swfscAirDAS"; version="0.2.3"; sha256="14fgc4smicig1h49xxx8jvdagxp7031azcjfckrdkqffmsmdcln1"; depends=[dplyr lubridate magrittr readr rlang stringr swfscDAS swfscMisc tidyr]; }; swfscDAS = derive2 { name="swfscDAS"; version="0.6.1"; sha256="1f9i4vj803jk29cds21mr51wm0z62vx96a4ww0cxi4gbyam7rwks"; depends=[dplyr lubridate magrittr purrr readr rlang sf swfscMisc tidyr]; }; swfscMisc = derive2 { name="swfscMisc"; version="1.6"; sha256="1nsr4n4dqm2jhmf3z2yg9x63x394cank70i41zrp2m0sd9wqprgk"; depends=[dplyr ggplot2 ggrepel HDInterval kknn magrittr mapdata maps rlang sf spatstat_geom tibble tidyr]; }; @@ -17907,6 +18129,7 @@ in with self; { swirl = derive2 { name="swirl"; version="2.4.5"; sha256="0cqyn2rnqfkb2wza4zdr1kcms5l0igbq79xh5i7765agdday2z9w"; depends=[digest httr RCurl stringr testthat yaml]; }; swirlify = derive2 { name="swirlify"; version="0.5.3"; sha256="1bpg6yz2adgspjlwsf2q83j1bq0iyvp9938smgc41861nsclngwr"; depends=[base64enc readr rmarkdown shiny shinyAce stringr swirl whisker yaml]; }; swissparl = derive2 { name="swissparl"; version="0.2.2"; sha256="0rj01qcg0vh3vwrbag42w7mvb9ld800hzn4lszmbiv13yifgi8ys"; depends=[crayon dplyr ggplot2 httr jsonlite magrittr purrr stringr tibble tidyr]; }; + switchSelection = derive2 { name="switchSelection"; version="1.0.1"; sha256="1z2wizh36fz3vp8hbjaq4fl48wpjb14rv3xqjkpyn5m1pvga7zfk"; depends=[gena hpa mnorm Rcpp RcppArmadillo]; }; switchboard = derive2 { name="switchboard"; version="0.1"; sha256="1qh6cfm5h0j17ldljpgj400f2dhcfaa4x1157d46cyfawfdscvc5"; depends=[magrittr]; }; switchcase = derive2 { name="switchcase"; version="0.1.1"; sha256="0h31nzyf7dzalgl65cw0k1fxylbmx78l45r5id2wcqdym23dv9a9"; depends=[]; }; switchr = derive2 { name="switchr"; version="0.14.8"; sha256="1q1rnwm0g5kk5z1szb0f9bvaqgpdnj22lvfnychb7jdhriwmn1zw"; depends=[RCurl RJSONIO]; }; @@ -17917,7 +18140,7 @@ in with self; { sym_arma = derive2 { name="sym.arma"; version="1.0"; sha256="13fhmgzd50mwlnz9m6nnn4arr4jdqf5h7dgli5lk08da9wx6cy69"; depends=[]; }; symDMatrix = derive2 { name="symDMatrix"; version="2.1.1"; sha256="0xmpw37qkbadqp1idv8qmazdmmv0sd4fwgihg1b97hxzqhsxw0fh"; depends=[bit ff LinkedMatrix]; }; symSEM = derive2 { name="symSEM"; version="0.1"; sha256="084c47fkpgxjafx856d9xjijjz4l1da76bdqq63fvmhhiz17q8gs"; depends=[metaSEM mvtnorm OpenMx Ryacas]; }; - symbol_equation_gpt = derive2 { name="symbol.equation.gpt"; version="1.1.1"; sha256="0dq7hlzwr97kl2vppvign8c0r44sr87pyrhfbq6fxddi2fs0z2rj"; depends=[htmltools markdown nextGenShinyApps r2symbols rstudioapi shiny shinyStorePlus]; }; + symbol_equation_gpt = derive2 { name="symbol.equation.gpt"; version="1.1.3"; sha256="1z7ww9wvyd4ma7bk0ynp2rbkrajd8b3frb1msh8wn2msj5k7pfpg"; depends=[htmltools markdown nextGenShinyApps r2symbols rstudioapi shiny shinyStorePlus]; }; symbolicDA = derive2 { name="symbolicDA"; version="0.7-1"; sha256="1x1qwrf587lgp9ciakrhiy3wj4g90x4g7r784rr2b97g1xwysjff"; depends=[ade4 cluster clusterSim e1071 RSDA shapes XML]; }; symengine = derive2 { name="symengine"; version="0.2.2"; sha256="1wjw6fbphkxrha859s27rvzjp0niysssicaamw9sm8895j8k5lfk"; depends=[Rcpp]; }; symmetry = derive2 { name="symmetry"; version="0.2.3"; sha256="01sk0v6kh9qi3phl51wk83c5v413ab23qmcqjd3hl2x4hn2rv2z6"; depends=[Rcpp RcppArmadillo Rdpack]; }; @@ -17935,7 +18158,7 @@ in with self; { synthesis = derive2 { name="synthesis"; version="1.2.3"; sha256="0nhnpqhs1h7iz49h852ns8pgmcl8via506idyp19dp778wbmxkn1"; depends=[MASS]; }; synthesisr = derive2 { name="synthesisr"; version="0.3.0"; sha256="0b50d5hfkscggn2f6h8wyljkar08r8cbc0a4l12f809w5hdnjc63"; depends=[stringdist]; }; synthpop = derive2 { name="synthpop"; version="1.8-0"; sha256="0ljq3vhprzxj0p5s57pr223n3mxbiwz0p5bdvjcdkw4xykx7zkka"; depends=[broman classInt foreign ggplot2 lattice MASS mipfp nnet party plyr polspline proto randomForest ranger rmutil rpart stringr survival]; }; - sys = derive2 { name="sys"; version="3.4.1"; sha256="0lng3ri17jxq06c6hhhmvsb65lazkiqpp1h4pii4w9jqvs7nskij"; depends=[]; }; + sys = derive2 { name="sys"; version="3.4.2"; sha256="1cz57jkc159zfgffvcdb40wv9avb5id7pdvgx8q1hs7vy1kcxgdp"; depends=[]; }; sysfonts = derive2 { name="sysfonts"; version="0.8.8"; sha256="1fq5dn4l09sgrbznfz9cakf4vgc3761zwicvqaazh0s8mzbaicpn"; depends=[]; }; sysid = derive2 { name="sysid"; version="1.0.4"; sha256="0fr9gf5yjin3zvz850z4r4pqc1r4mwx8d46sl64i4csdm9qnqagy"; depends=[bitops ggplot2 polynom reshape2 signal tframe zoo]; }; syslognet = derive2 { name="syslognet"; version="0.1.2.1"; sha256="0nwni2mn7w43pfasqa2dwy1l6r0ymlkwlsyd5q47fajdr8v1ir0q"; depends=[]; }; @@ -17952,25 +18175,25 @@ in with self; { tabbycat = derive2 { name="tabbycat"; version="0.17.0"; sha256="1q18vnk4jyql46vjj6bhn2sa65yswg1hw8mbrwv7602dfk09p74x"; depends=[dplyr janitor magrittr purrr rlang stringr tibble tidyr]; }; taber = derive2 { name="taber"; version="0.1.2"; sha256="0cib8fsib4q8nf18vcpailvkplf57cm8fshb09clxm3zcp8j9c17"; depends=[dplyr magrittr]; }; tabit = derive2 { name="tabit"; version="0.2.1"; sha256="0jy95jpbzj4rgaxmm6ki9wr0cl1w13pygq3yavdccjr82mayfpvc"; depends=[]; }; - tablaxlsx = derive2 { name="tablaxlsx"; version="1.2.4"; sha256="19yg8m264f1hjsi8b7zxjpbvlaz2jrxj2bd9nv95g52dvlysg4nk"; depends=[openxlsx]; }; + tablaxlsx = derive2 { name="tablaxlsx"; version="1.2.5"; sha256="1cwjqxsqspyrv19wx1fvqk2x2jc3vv6h7k8flpr74a5la1jmxsbd"; depends=[openxlsx]; }; table_express = derive2 { name="table.express"; version="0.4.2"; sha256="0iyx45q64ya82054alj1jm53zh2l8m05z743k0ifscyr0lkmp3zm"; depends=[data_table dplyr magrittr R6 rlang tidyselect]; }; table_glue = derive2 { name="table.glue"; version="0.0.3"; sha256="1viaz9swdhgk4ysjhyvl9fr4m430qvmwwblij2b2dadwbdl0z9k4"; depends=[glue stringi]; }; table1 = derive2 { name="table1"; version="1.4.3"; sha256="1wr5cqc6a81b5b2fjvw4swb579q5llf63658l6srhxbxx0qba5l3"; depends=[Formula htmltools knitr yaml]; }; table1xls = derive2 { name="table1xls"; version="0.4.0"; sha256="0ixbshbp9hkcg12hj32vgb5bp0pj4rbc3i6g1xdg2zhqp7zanics"; depends=[XLConnect]; }; tableExtra = derive2 { name="tableExtra"; version="1.0.1"; sha256="1rbcxd3rjhvcpayj6d7mh30vkbc7g4mv4qa7552xz3x1wny0n4mm"; depends=[gtable]; }; - tableHTML = derive2 { name="tableHTML"; version="2.1.1"; sha256="0xqvk4smc8z6l4vpg39y1rxkx22spx7nvdsvp6xq6x7pmbsl0m8m"; depends=[htmltools jpeg magrittr png shiny webshot]; }; + tableHTML = derive2 { name="tableHTML"; version="2.1.2"; sha256="0x86q0nddkyan9yh2jaldrnc30q1n3q0fnza2fnavzbz5c2hxapw"; depends=[htmltools jpeg magrittr png shiny webshot]; }; tableMatrix = derive2 { name="tableMatrix"; version="0.82.0"; sha256="1sskijhbqakamrk2rv7v5zpjsdi8jw0jl2z96l0vhsvsiq0cz1c8"; depends=[data_table]; }; tablecompare = derive2 { name="tablecompare"; version="0.1.0"; sha256="0cf557yi0h2y4idk8qwv0gk468pn0fhyndiy2jx28gdsz33h5p3a"; depends=[data_table glue magrittr purrr rlang tidyselect]; }; tabledown = derive2 { name="tabledown"; version="0.0.3"; sha256="0pvd9i7ycsarsp7m9hdss86vx0mdrv57iqxk8nyqixfdvrwb48pv"; depends=[data_table dplyr ggplot2 lavaan magrittr mirt MOTE psych tibble tidyselect]; }; tableeasy = derive2 { name="tableeasy"; version="1.1.2"; sha256="1aa3af245w1frj94j0qynyjv5pvvajas2fmdnyyiknrnrghcn7n2"; depends=[lmtest mgcv nortest survival tableone]; }; tableone = derive2 { name="tableone"; version="0.13.2"; sha256="1br78y68037g5v5jhgi9l393kj2msamdklim8ki40hmxk9bibkxi"; depends=[e1071 gmodels labelled MASS nlme survey zoo]; }; tablerDash = derive2 { name="tablerDash"; version="0.1.0"; sha256="1mnp6lxa7d669r325aynq1n3f35r9sy4v1fvdh4cymbf33s8mkmm"; depends=[htmltools knitr shiny]; }; - tables = derive2 { name="tables"; version="0.9.10"; sha256="0nf6wp38br81bdckr47xign6j10lsp9vmqccjblgd0jcirgg19fw"; depends=[htmltools knitr]; }; + tables = derive2 { name="tables"; version="0.9.17"; sha256="1ygf1jir32dwy7617imrr2pkqf5qf894lbxrjm7kqflq3ar6zf5z"; depends=[htmltools knitr]; }; tableschema_r = derive2 { name="tableschema.r"; version="1.1.2"; sha256="1lnl1xybwzg00hqksbj2g6r1hrzwlh2al08hhml0n42khmvpg05g"; depends=[config future httr jsonlite jsonvalidate lubridate purrr R6 RCurl rlist stringr urltools]; }; tablesgg = derive2 { name="tablesgg"; version="0.8-1"; sha256="0vkl9386qnalr5d0libqs2ihszggs0qyx6ffyjn8j8ab3kczzxhr"; depends=[ggplot2 tables]; }; - tablet = derive2 { name="tablet"; version="0.5.8"; sha256="0c5gjrvr6r4vqxh2dc7v2jads48wwijvbzadxa92qzfsmxw3p382"; depends=[dplyr DT fs kableExtra magrittr rlang spork tidyr]; }; + tablet = derive2 { name="tablet"; version="0.6.2"; sha256="1bsifjz2wdz416ws2iy203ipf1bcqw3r6d2fh124ha0hb1gvyikq"; depends=[dplyr fs kableExtra magrittr reactable rlang spork tidyr yamlet]; }; tablexlsx = derive2 { name="tablexlsx"; version="0.1.0"; sha256="0rispm626s59g3irdkx8clmjlqsg1vdlyjkzx0z74m13nkgmfw82"; depends=[dplyr magrittr openxlsx]; }; - tabnet = derive2 { name="tabnet"; version="0.3.0"; sha256="04m8bg1glnhxb2pjcxnwlcwzbxvk0bskz00dkd4lyvgsq74xwmvi"; depends=[coro glue hardhat magrittr progress rlang tibble torch vctrs]; }; + tabnet = derive2 { name="tabnet"; version="0.4.0"; sha256="1wxarcl68s4v88b1x2qw4vc4ybm66zm10qcinwk892n3srs7isfc"; depends=[coro glue hardhat magrittr progress rlang tibble torch vctrs]; }; taboolaR = derive2 { name="taboolaR"; version="0.1.0"; sha256="1nv189d6sjjrhc1nr7xhdf22gfh1z93rlcgm2vk7kcs43avm8fwb"; depends=[jsonlite]; }; tabr = derive2 { name="tabr"; version="0.4.5"; sha256="1nkzbqy9nb6pd895glld009vmry5rnhd7h9q31s8xh97kwlwk9c2"; depends=[crayon dplyr ggplot2 magrittr purrr tibble tidyr]; }; tabshiftr = derive2 { name="tabshiftr"; version="0.4.1"; sha256="1ri28zxsxn9bkbq0f47q6mkr889krvixvk63in0jbn9hya77gdy8"; depends=[checkmate crayon dplyr magrittr purrr rlang stringr testthat tibble tidyr tidyselect]; }; @@ -17983,7 +18206,7 @@ in with self; { tabulator = derive2 { name="tabulator"; version="1.0.0"; sha256="1dylmw5prwir3qj13lxkvlzq6j7r23y3gz1g0bjyanb0xmzgxn4k"; depends=[assertthat data_table dplyr magrittr purrr rlang stringr tibble tidyr]; }; tabulog = derive2 { name="tabulog"; version="0.1.1"; sha256="0n6qjd7kmvxx5na71f358pw3bbwa69vh8qjkrs5mkb3izxabcq67"; depends=[yaml]; }; tacmagic = derive2 { name="tacmagic"; version="0.3.1"; sha256="1rayyavjppi5dbcmb4yb2nf85ch2li766sdllfsirb19bb3d4c2d"; depends=[pracma R_matlab]; }; - tactile = derive2 { name="tactile"; version="0.2.0"; sha256="0jjfbsadxbf9s6vzi82rw5qa6hdc8iz4jci9xpbzwrjkb90dzd08"; depends=[gridExtra lattice latticeExtra MASS RColorBrewer]; }; + tactile = derive2 { name="tactile"; version="0.2.1"; sha256="1yly05zin0isad69d6j1k2nb9ykvz0gj2xs9mqiq2cda0mdxmh65"; depends=[gridExtra lattice latticeExtra MASS RColorBrewer]; }; tagcloud = derive2 { name="tagcloud"; version="0.6"; sha256="04zrh029n8pjlxlr6pdd7xhqqhavbrj3fhvhj6ygzlvi2jslxnwl"; depends=[RColorBrewer Rcpp]; }; tailDepFun = derive2 { name="tailDepFun"; version="1.0.1"; sha256="0rrjg4ky3pjbfwppmnwyijvlzq3c3nf33rl0w4vly52v1ramp5c6"; depends=[copula cubature mvtnorm SpatialExtremes]; }; tailTransform = derive2 { name="tailTransform"; version="1.0.4"; sha256="0nflrzq5m1jwf91lavwwzl6ja4qswva1z4gpdbm3q5iscg1hbwp7"; depends=[]; }; @@ -17996,15 +18219,16 @@ in with self; { tangram_pipe = derive2 { name="tangram.pipe"; version="1.1.2"; sha256="0v86xn5rvr6c74cqhiwfxgfb4mizqlf5bqc51870na28i2ariaap"; depends=[dplyr]; }; tapkee = derive2 { name="tapkee"; version="1.2"; sha256="1xgz2cv5jb1hdnl8y8zs4x6p1dk1vv8zbs4wfsj61gpfyf9gkh4f"; depends=[]; }; tapnet = derive2 { name="tapnet"; version="0.3"; sha256="1fjg98m19iwbzijs5b5l4ssrbx1shv1hmgn1166cbni9y76m44sh"; depends=[ape bipartite MPSEM phytools vegan]; }; - tarchetypes = derive2 { name="tarchetypes"; version="0.7.5"; sha256="05yhq8xnrpk37x7fq0yjw4m527ji28s16dskfmljrbrzb064nw2g"; depends=[digest dplyr fs furrr future future_callr rlang targets tibble tidyselect vctrs withr]; }; + tarchetypes = derive2 { name="tarchetypes"; version="0.7.6"; sha256="06hqwzh5mca7606rq5bwhqk9cbhqsw6vl1pax1y1890fnkzcm1my"; depends=[digest dplyr fs furrr future future_callr rlang targets tibble tidyselect vctrs withr]; }; tardis = derive2 { name="tardis"; version="0.1.4"; sha256="1hfqnszhly6cfi7aii3v9nnrj3md389bflvf3igixrn4wb7mfyi5"; depends=[cpp11 dplyr magrittr purrr rlang stringi stringr tidyr]; }; targeted = derive2 { name="targeted"; version="0.3"; sha256="0h05h8pgjjab5clv501m9b2fcycspj0dc7zs72lwp15al2rikmzg"; depends=[data_table digest futile_logger future_apply lava mets optimx progressr R6 Rcpp RcppArmadillo survival]; }; - targets = derive2 { name="targets"; version="0.14.3"; sha256="0mhwvlbxnb4w054pjiw2smss28i90sg52w8v040y7sqy6gq2c8n6"; depends=[base64url callr cli codetools data_table digest igraph knitr R6 rlang tibble tidyselect vctrs withr yaml]; }; + targets = derive2 { name="targets"; version="1.1.3"; sha256="0m5sdbzyhwmfhv08b0bld4fp8vs1ga6zxy8cjpvm8amlskgxxxdm"; depends=[base64url callr cli codetools data_table digest igraph knitr R6 rlang tibble tidyselect vctrs yaml]; }; tashu = derive2 { name="tashu"; version="0.1.1"; sha256="0rirjalridr79a7j3qz80l2vp6m8paqr97ac241b58756k7nr5j7"; depends=[dplyr drat ggplot2 lubridate plyr randomForest RColorBrewer reshape2]; }; tastypie = derive2 { name="tastypie"; version="0.1.0"; sha256="15ivl0rvnp1j09axk0jaf1wip5cjbnvfmx0crhqqd5y27mfa2hzd"; depends=[dplyr fmsb ggplot2 packcircles RColorBrewer scales shadowtext tibble]; }; tatest = derive2 { name="tatest"; version="1.0"; sha256="1yd9pdpdhxwpllnj5wxa7ly29qiw8qywx9lx0w3nizczlx35fgjy"; depends=[]; }; tatoo = derive2 { name="tatoo"; version="1.1.2"; sha256="0lvnl2lqp16af4rkmijl47bx5xf17gpji21s0h8xxzpbxbmy3xwx"; depends=[assertthat colt crayon data_table magrittr openxlsx stringi withr]; }; tau = derive2 { name="tau"; version="0.0-24"; sha256="1q8pd7m6rd0899c44plxns5yydifhsccyb51glgw07ni5v4rz3gh"; depends=[]; }; + tauProcess = derive2 { name="tauProcess"; version="1.1.1"; sha256="17i3q7gdhhchcyiiv9jf27x4ig0hzsbfh1lvqhmndpgv9fjmrzjz"; depends=[survival]; }; tauturri = derive2 { name="tauturri"; version="0.3.0"; sha256="014301f5mzy6vblqzb61bxjv46kdynmmrxjpxyvk01w1k8wkwfcn"; depends=[httr magrittr plyr purrr tibble]; }; taxa = derive2 { name="taxa"; version="0.4.2"; sha256="1vb3igz24xkgsds5145h3hqlc7grn3l2kpslg87j4hsw66i86py3"; depends=[cli crayon dplyr magrittr pillar rlang stringr tibble vctrs viridisLite]; }; taxadb = derive2 { name="taxadb"; version="0.2.1"; sha256="0m6rbvnf6ngz6i2w5jvmca0zl0pyy3b30vhjqxi08glii5fkwx2k"; depends=[contentid DBI dbplyr dplyr duckdb magrittr memoise rlang stringi tibble]; }; @@ -18026,11 +18250,11 @@ in with self; { tcftt = derive2 { name="tcftt"; version="0.1.0"; sha256="0p5ln0sl0fasdn49252g4lvwgwajgl7lh33a4r073ib54hxbj7bk"; depends=[]; }; tcgaViz = derive2 { name="tcgaViz"; version="1.0.2"; sha256="0k1jrgbxzlc9q3cx5y03mxfrrvhdfwjjqjfqlmrq72skbl027y08"; depends=[config data_table dplyr DT ggplot2 ggpubr golem magrittr plotly readr reshape2 rlang rstatix scales shiny shinyFeedback shinyjs stringr tidyr tidyselect]; }; tci = derive2 { name="tci"; version="0.2.0"; sha256="15drq6rvakf8jxmb1g5d7jjl7vnbzg314d809zzq19bicivvxsqj"; depends=[ggplot2 gridExtra knitr mvtnorm Rcpp RcppArmadillo reshape reshape2 truncnorm xtable]; }; - tcl = derive2 { name="tcl"; version="0.1.1"; sha256="01klrzvw7vc0iwqpmcikgqm8jx3g7536r5f8gb6vwcik912maxnl"; depends=[colorspace eRm lattice ltm MASS Matrix numDeriv psych psychotools]; }; + tcl = derive2 { name="tcl"; version="0.2.0"; sha256="0n735xyl0fr3zgigw68xpy1ky3rfd2djwg9qhgbgif0cvgrrki1n"; depends=[eRm lattice ltm MASS Matrix numDeriv psychotools rlang]; }; tcltk2 = derive2 { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; }; tclust = derive2 { name="tclust"; version="1.5-4"; sha256="1a3i6kvfzc2d6rdf75w03n5172jihhqa8mvzcb4m8l0w6mgdlm9b"; depends=[]; }; tcpl = derive2 { name="tcpl"; version="3.0.1"; sha256="1xsw532xdf4xksrggsszwbh7rj818hvi9xmndhdhdk6wq6bg7xh4"; depends=[data_table DBI dplyr ggplot2 gridExtra numDeriv plotly RColorBrewer RMariaDB sqldf stringr tcplfit2 tidyr]; }; - tcplfit2 = derive2 { name="tcplfit2"; version="0.1.3"; sha256="1y69z27mgphcj5qkhlpgv0as59aralimf7mbfrdz5n6nkqfj5krr"; depends=[future future_apply numDeriv RColorBrewer stringr]; }; + tcplfit2 = derive2 { name="tcplfit2"; version="0.1.5"; sha256="1illbx2ifq63ki8yn97gs0lpl4hzdcl2sbwq7id3pgd8pmfka68w"; depends=[numDeriv RColorBrewer stringr]; }; tcsinvest = derive2 { name="tcsinvest"; version="0.1.1"; sha256="1harmb5ni70k241aq1vww5w7fmjqmlwd6nfma2xa44f3hj7nrf52"; depends=[data_table httr jsonlite websocket]; }; td = derive2 { name="td"; version="0.0.6"; sha256="1zycwnl7n03jw76n8qrk2zhgnakj6npid25pflj6dnmbjc47ih32"; depends=[RcppSimdJson]; }; tdROC = derive2 { name="tdROC"; version="1.0"; sha256="137j1m9pysjcz1gsfcym0438by3c7na21ccjlqf7xfccr1y8k2k6"; depends=[survival]; }; @@ -18038,6 +18262,7 @@ in with self; { tdcmStan = derive2 { name="tdcmStan"; version="2.0.0"; sha256="0xa80r37abc9fzf9zcf0zpimadwa3glhw3qbn7wbg0cq93cm04df"; depends=[dplyr glue magrittr rlang stringr tibble tidyr tidyselect]; }; tdigest = derive2 { name="tdigest"; version="0.4.1"; sha256="1g4yk01lmx8cz5q06bxm3kcsi7c9cvpdfi925csc4qaf5rdrad4y"; depends=[magrittr]; }; tdr = derive2 { name="tdr"; version="0.13"; sha256="0i0hnb3fc4d1mbbxcpzmyfh1w2rahfjabg5iyxym3yjd6377al15"; depends=[ggplot2 lattice RColorBrewer]; }; + tdsa = derive2 { name="tdsa"; version="1.0-1"; sha256="0k7av6f8f052b9ww7g8frvvmj8k740jsnk55jgfvwdw3k6bjjmwx"; depends=[deSolve mathjaxr numDeriv]; }; tdsc = derive2 { name="tdsc"; version="1.0.3"; sha256="1h46cflxj27i9bkl7iqxn7kzccl9b8r3fa9f5ska3a9p57algfyv"; depends=[data_table moments]; }; tdthap = derive2 { name="tdthap"; version="1.2"; sha256="0x67k50vly92b9n5hpqp4hy87kh8r6nzadsj8xzz4lvcmb4vb6mq"; depends=[]; }; tea = derive2 { name="tea"; version="1.1"; sha256="0ql7lrxk0ihm49kqsvz79ig8i54rwiy9nxav4v9hy72j9kj5bgjn"; depends=[Matrix]; }; @@ -18052,22 +18277,22 @@ in with self; { telegram = derive2 { name="telegram"; version="0.6.0"; sha256="02wwa115f0vz2d9y4nf01397hjkpc3cv2gdl47snrajrm41gji7y"; depends=[curl httr jsonlite R6]; }; telegram_bot = derive2 { name="telegram.bot"; version="3.0.0"; sha256="0fqv2piddb8i37rpvw6li25jhc9mbi7fyqmib90xah6qmlaji02g"; depends=[curl httpuv httr jsonlite openssl R6]; }; telemac = derive2 { name="telemac"; version="0.1.1"; sha256="12wkhya49yi0qqm73sizgnf6r5lkssg07wc6pq9iychjjd0cxfly"; depends=[data_table dplyr fs gstat magrittr purrr raster Rcpp RcppArmadillo rlang sf sp stringr sys tidyr tidyselect]; }; + telemetR = derive2 { name="telemetR"; version="1.0"; sha256="04samfr6m3lnyvq03an5an6z4iyqizn3qyjjblphrix2p5wrl37r"; depends=[dplyr ggplot2 lubridate tidyr zoo]; }; tempR = derive2 { name="tempR"; version="0.9.9.20"; sha256="12wnb9w5ql4q9n0gppjaxa66rrmdp0mklrhpp1chf9qr9wyzjkxi"; depends=[]; }; tempdisagg = derive2 { name="tempdisagg"; version="1.1"; sha256="1v5wl1kkfjpngai31d9g6x2pgri7x5vx9qxlpa9zhxbixpprv7mz"; depends=[]; }; temperatureresponse = derive2 { name="temperatureresponse"; version="0.2"; sha256="1id3wjzfs132hj8cm7gpf105qaay9dff07ixah9rmn5sk6si0zmq"; depends=[AICcmodavg broom dplyr minpack_lm numDeriv rootSolve]; }; templateICAr = derive2 { name="templateICAr"; version="0.6.2"; sha256="0krkxcykgj239xx2gzww7x3xwdg8a90ysmrkisx8546admwxyj7z"; depends=[abind excursions expm fMRItools ica Matrix matrixStats pesel Rcpp RcppEigen SQUAREM]; }; templates = derive2 { name="templates"; version="0.3.0"; sha256="0xnzj3cvhw1r7zfqaijbfdyclka61jwixcdh05a5z9qwgv0076sh"; depends=[dat magrittr stringr]; }; templr = derive2 { name="templr"; version="0.2-0"; sha256="1s2awbcf3vaalbrwz5ryfiz69vhapy9h6jhy6zgzqqs5l1aw4ad0"; depends=[jsonlite remotes xml2]; }; - tempoR = derive2 { name="tempoR"; version="1.0.4.4"; sha256="0gn16j496833pvbjaf6wx26z9ilwssjp947mcyk6n2jb33x93rr2"; depends=[doParallel foreach pls]; }; tenispolaR = derive2 { name="tenispolaR"; version="0.1.4"; sha256="0xpp1hi3xnkg55aixgy2bp5476i503h8gsiss9x7f15274kx0d7s"; depends=[stringr]; }; tensor = derive2 { name="tensor"; version="1.5"; sha256="19mfsgr6vz4lgwidm80i4yw0y1dr3n8i6qz7g4n2xa0k74zc5pp1"; depends=[]; }; tensorA = derive2 { name="tensorA"; version="0.36.2"; sha256="19wwh654qlja4z1n7afjpzsrrm53p8ddysa2vra5mdnkddb4g2cf"; depends=[]; }; tensorBF = derive2 { name="tensorBF"; version="1.0.2"; sha256="1dw1a6xqcsl4isbzbfiplgqq5nak5n9ffzm23mzzmkh1r1a8kl1y"; depends=[tensor]; }; tensorBSS = derive2 { name="tensorBSS"; version="0.3.8"; sha256="1chgkdshjpxzy0cxkgjzpr5k4v2hyad1vchrxyqhsj9isfic2581"; depends=[abind fICA ggplot2 ICtest JADE Rcpp RcppArmadillo tensor tsBSS]; }; - tensorFun = derive2 { name="tensorFun"; version="0.1.1"; sha256="0ij3dshnj448scws6d2pdw2ik34hbhq9mksmllgy0g8l257a3x8d"; depends=[ClimProjDiags MASS psychTools]; }; - tensorTS = derive2 { name="tensorTS"; version="1.0.0"; sha256="0nbks7djd4wggn33f39zc2zacz6z4dpvgk9fj9a90kcmyiw0rckl"; depends=[abind expm MASS Matrix pracma rTensor tensor]; }; + tensorTS = derive2 { name="tensorTS"; version="1.0.1"; sha256="0qn6h3icgcg7ipyjk0cc9pbc97d58m56f1w8ijydms42r2xcnipg"; depends=[abind expm MASS Matrix pracma rTensor tensor]; }; tensorflow = derive2 { name="tensorflow"; version="2.11.0"; sha256="1nqb3vgsw1xrpi1skw6yqwgdri3i8d9np0jylzfj7plizx63z64b"; depends=[config processx reticulate rstudioapi tfautograph tfruns yaml]; }; tensorr = derive2 { name="tensorr"; version="0.1.1"; sha256="18xdvp328h96jn8y1iayxh7cyz2s8j5nn43nq18pyaxq271hkfyh"; depends=[assertive_base assertive_properties assertive_types Matrix purrr]; }; + tensorregress = derive2 { name="tensorregress"; version="5.0"; sha256="110jpsb098jy55j7gp8vx3qk7mgcqhv6c11c5ll2nl1w03kqalm3"; depends=[MASS pracma]; }; tensorsparse = derive2 { name="tensorsparse"; version="3.0"; sha256="0xx003nh5bi87cbsqb7ikpcs4yhjhphh7pybzzas44qkwbn4fn1k"; depends=[]; }; tensr = derive2 { name="tensr"; version="1.0.1"; sha256="1z6b3ra7fgn88mxbhsq65x3frj5j7p17n119s9kbw7sg9y633vfx"; depends=[assertthat]; }; tergm = derive2 { name="tergm"; version="4.1.1"; sha256="09axlhf5n2jwc84ih05ywz8addqfai7g1cdlzhsbmjnsn1d89kai"; depends=[coda ergm MASS network networkDynamic nlme purrr robustbase statnet_common]; }; @@ -18075,7 +18300,7 @@ in with self; { term = derive2 { name="term"; version="0.3.5"; sha256="1ig1hvyv18d1x19jmvkg66m6nn8kdlffj5hx70vzd4sxz68j2k0v"; depends=[chk extras lifecycle purrr rlang universals vctrs]; }; terminaldigits = derive2 { name="terminaldigits"; version="0.1.0"; sha256="0vj7pylr410wi59qj2313iximsyl0v9ffg7z9gcfg720g5zrvfkm"; depends=[discretefit Rcpp]; }; ternvis = derive2 { name="ternvis"; version="1.2"; sha256="057i6i3ygxrin0npc18gsg3dpdldzafyb5sr6lix5mhy6b09lkxf"; depends=[dichromat maps quadprog]; }; - terra = derive2 { name="terra"; version="1.7-18"; sha256="0ipavj170yzp88dvbka6a0y683qn78dj7chr1ym1ghncrqkmk0fn"; depends=[Rcpp]; }; + terra = derive2 { name="terra"; version="1.7-29"; sha256="19bwakxccgyn054p7nrf820jq7nwpcjlrgj2ldk137scld9b0f9z"; depends=[Rcpp]; }; terrainmeshr = derive2 { name="terrainmeshr"; version="0.1.0"; sha256="1xab6wzq2izzdvsss1rlgp5m3cn45naxhymq6cglipj0fd792jbr"; depends=[Rcpp]; }; terrainr = derive2 { name="terrainr"; version="0.7.4"; sha256="0qgr38shvdl9c6mcrvj9h6kydfnp7wp93n2qac9za96pbij4js7d"; depends=[base64enc ggplot2 glue httr magick png rlang sf terra unifir units]; }; tessellation = derive2 { name="tessellation"; version="2.1.2"; sha256="1mlszcnycz4ys3ccp6287z15n30j24fls223dww7yknj3n1i1w9k"; depends=[cxhull english hash interp R6 randomcoloR rgl Rvcg scales sets]; }; @@ -18091,7 +18316,7 @@ in with self; { tester = derive2 { name="tester"; version="0.1.7"; sha256="1x5m43abk3x3fvb2yrb1xwa7rb4jxl8wjrnkyd899ii1kh8lbimr"; depends=[]; }; testforDEP = derive2 { name="testforDEP"; version="0.2.0"; sha256="1mgzhj8b35r5cm4bl0nnyxj0h7rwd28d17qvgvaky2kvm2r83cf9"; depends=[Hmisc minerva Rcpp]; }; testit = derive2 { name="testit"; version="0.13"; sha256="104dcxdmzgj340mwk4lpw1y6j1xc4rv4a2v09ckx3nvbmdl73m4h"; depends=[]; }; - testthat = derive2 { name="testthat"; version="3.1.7"; sha256="1awfcpabn6f7rdi7lvdj6hzm3gq6qzn38rls6m36q72874bnpn0s"; depends=[brio callr cli desc digest ellipsis evaluate jsonlite lifecycle magrittr pkgload praise processx ps R6 rlang waldo withr]; }; + testthat = derive2 { name="testthat"; version="3.1.8"; sha256="09y8gdzssb41m8j2ph12g6nlwxm02075aiyc5bb6lsqgvnpzi4rl"; depends=[brio callr cli desc digest ellipsis evaluate jsonlite lifecycle magrittr pkgload praise processx ps R6 rlang waldo withr]; }; testthis = derive2 { name="testthis"; version="1.1.1"; sha256="0csragn695698dpkr9d3md0g81bzpy5mybd0jik669q9cs8sdzh2"; depends=[assertthat devtools fs magrittr pkgload rprojroot stringi testthat usethis]; }; testtwice = derive2 { name="testtwice"; version="1.0.3"; sha256="06fr13ww2wqk753p0cnl1ldn3nqrvdfnz0lgkpldcn0xwiwjh2x2"; depends=[mvtnorm]; }; tetraclasse = derive2 { name="tetraclasse"; version="0.1.21"; sha256="1cl2cah0xi6x3rvvdy56iszai6rkbxc1w3x13v0l1z1nryff7c6a"; depends=[dplyr FactoMineR ggplot2 ggrepel magrittr reshape2 tibble tidyr]; }; @@ -18110,7 +18335,7 @@ in with self; { textBoxPlacement = derive2 { name="textBoxPlacement"; version="1.0"; sha256="1wjha1i4bnyxw4sa2ayy22lybz2yg97ljja7lfwhw6jrys82gkvz"; depends=[]; }; textTinyR = derive2 { name="textTinyR"; version="1.1.7"; sha256="17c3vciqx2i0h0jkqsiva8kp6pwcrscwgyxf804sjvdbym0pwc7d"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; textTools = derive2 { name="textTools"; version="0.1.0"; sha256="1d9j1bj17ki169h4lmlz2b2c2m60q6b95prjscz346lc4vw5160a"; depends=[data_table]; }; - textab = derive2 { name="textab"; version="1.0"; sha256="0al3qlaa2k00y3r6qkadzz9fw2picfpjr7hi2inxrhkqr4dzkd17"; depends=[]; }; + textab = derive2 { name="textab"; version="1.0.1"; sha256="1z965iw7457yldz6nm2hfjq6c5q12j1cza7v0jkbgi9zaydsbml2"; depends=[]; }; textcat = derive2 { name="textcat"; version="1.0-8"; sha256="17kl76m6065ci84p4ii7fxhwg1fckwf8690m71w9rbkbax3h2rfb"; depends=[slam tau]; }; textclean = derive2 { name="textclean"; version="0.9.3"; sha256="0kgjh6c4f14qkjc4fds7q7rpf4nkma3p0igm54fplmm3p853nvrz"; depends=[data_table english glue lexicon mgsub qdapRegex stringi textshape]; }; textdata = derive2 { name="textdata"; version="0.4.4"; sha256="1hz74sdhypf67w1p71igwaqdiv0w635lbdm4hvd0zdzhz1w1cxd7"; depends=[fs rappdirs readr tibble]; }; @@ -18124,7 +18349,7 @@ in with self; { textometry = derive2 { name="textometry"; version="0.1.6"; sha256="0frxwi3n7syjgjxgzc4ync9svd25bq2zyppiyrla1n85dawi3r8f"; depends=[]; }; textplot = derive2 { name="textplot"; version="0.2.2"; sha256="1ag2h365zsx0fxbl05s2yfhf1q13p40akvbqg4qwsb5ynh2a56bf"; depends=[data_table lattice Matrix]; }; textrank = derive2 { name="textrank"; version="0.3.1"; sha256="0a777wchiax0y8jprvz5xw8h1xh7yvad0wrqhkgbqy5p3cvlcih6"; depends=[data_table digest igraph]; }; - textrecipes = derive2 { name="textrecipes"; version="1.0.2"; sha256="1m6g60g3rbn5rw7pcdp2aq71w1wfkc9r1aiqx47qsfaalrpdg6i2"; depends=[cpp11 dplyr generics glue lifecycle magrittr Matrix purrr recipes rlang SnowballC tibble tokenizers vctrs]; }; + textrecipes = derive2 { name="textrecipes"; version="1.0.3"; sha256="0b771d8qbd70mz854n0d6s7wn8jplczk0dziyz1q3fzjcnkz1cv3"; depends=[cpp11 dplyr generics glue lifecycle magrittr Matrix purrr recipes rlang SnowballC tibble tokenizers vctrs]; }; textreg = derive2 { name="textreg"; version="0.1.5"; sha256="0h44z5hyndnvzd9axix7gpmhbdx347dfgxw9r8w38kyw6dklbjy6"; depends=[NLP Rcpp tm]; }; textreuse = derive2 { name="textreuse"; version="0.1.5"; sha256="1mva0f6pk0kpfw0vf90qw3a25f1i3imdhk2s7hxyzans0z2237jd"; depends=[assertthat BH digest dplyr NLP Rcpp RcppProgress stringr tibble tidyr]; }; textshape = derive2 { name="textshape"; version="1.7.3"; sha256="0k9injxykgj2qprc7dygd7gafvcbh3r9x84qzaa1al21pk0dz7ds"; depends=[data_table slam stringi]; }; @@ -18162,14 +18387,14 @@ in with self; { theft = derive2 { name="theft"; version="0.4.2.4"; sha256="0rd6dvq4zhy36w65181m1g6csd4bl8pn83c0rf6rb15nvyy5vgw1"; depends=[broom caret dplyr fabletools feasts ggplot2 janitor purrr R_matlab Rcatch22 reshape2 reticulate rlang Rtsne scales tibble tidyr tsfeatures tsibble]; }; theiaR = derive2 { name="theiaR"; version="0.4.0"; sha256="07m532r67cil2ya2w9lfhycrm8n0ga0r3x7jwbp5jbd83hw4l1p6"; depends=[askpass httr R6 raster XML]; }; thematic = derive2 { name="thematic"; version="0.1.2.1"; sha256="1hr9373256n1rya3l2z2sqwfifypsh6wrs2s27aqchh9sm0blkmy"; depends=[farver ggplot2 rappdirs rlang rstudioapi scales]; }; - themis = derive2 { name="themis"; version="1.0.0"; sha256="0ink3ixal4942w1sbqjdhxpl7j0aqvksyiiz9ddd72wk30cvpwaw"; depends=[dplyr generics glue gower hardhat lifecycle purrr RANN recipes rlang ROSE tibble withr]; }; + themis = derive2 { name="themis"; version="1.0.1"; sha256="0mnhqcaxlidakfm9y8vyqscx0w9fk6j9mwcdb9l3bi5c1pqy5g81"; depends=[dplyr generics glue gower hardhat lifecycle purrr RANN recipes rlang ROSE tibble withr]; }; thermocouple = derive2 { name="thermocouple"; version="1.0.2"; sha256="1rlvhw3i83iq1vibli84gj67d98whvgkxafwpmisva1m4s1bmij4"; depends=[]; }; thestats = derive2 { name="thestats"; version="0.1.0"; sha256="15y6ibw7i4nrm8990yirqf64gl1x4l7lj3ajk19vi6ccxw82x2gl"; depends=[dplyr]; }; thewitcher = derive2 { name="thewitcher"; version="1.0.1"; sha256="140f0insb5gqrfdaq5cnzj6bl0akbif57jnyy7ai3rb2rwy9n2nv"; depends=[dplyr ggplot2 gridExtra magrittr MASS readr tidyverse usethis]; }; thgenetics = derive2 { name="thgenetics"; version="0.4-2"; sha256="1314gry3xs9v4jy13g08q16qy4ax3s0bc7d74gi0wbpkgdrk3lql"; depends=[]; }; thief = derive2 { name="thief"; version="0.3"; sha256="12ymkkisg5p0g1gmvlczhp4dc7mirjg55fqqmz2d90673vlg6rfq"; depends=[forecast ggplot2 hts]; }; thinkr = derive2 { name="thinkr"; version="0.16"; sha256="104n4g70fk209b721qchrbv95dwxzq6vvhz36asdk40kzzacdzp2"; depends=[assertthat cli devtools dplyr ggplot2 lazyeval lubridate magrittr officer rvg stringi stringr tidyr withr]; }; - this_path = derive2 { name="this.path"; version="1.2.0"; sha256="179qssmv3cl49b5s6slmqn58w5bmvihpaf0r2pmamqvc0qhgsci5"; depends=[]; }; + this_path = derive2 { name="this.path"; version="1.4.0"; sha256="11aamg38q7xc3q3gfziscq7qabvz5b9wl6slv1nbh1xqa5arx2bk"; depends=[]; }; thor = derive2 { name="thor"; version="1.1.4"; sha256="0y75lnmjdcjxca3a0h9a30c0cll68arbv7rbdxkla92arm3k39vx"; depends=[R6 storr]; }; thorn = derive2 { name="thorn"; version="0.2.0"; sha256="0sybjqwv9al5khkhhc7khbgr7n2vy6aggarh9n75mxpa8hn7j2qr"; depends=[htmlwidgets]; }; thredds = derive2 { name="thredds"; version="0.1-3"; sha256="08jlvi0z0rdqc46pgzpv84x0r8qxpvnh2w34g1hyprgcwh0b7537"; depends=[httr magrittr R6 rlang xml2]; }; @@ -18187,24 +18412,25 @@ in with self; { tibbletime = derive2 { name="tibbletime"; version="0.1.8"; sha256="18a63vipcw95yk37r490a3a4xag59v7475bch2dizq7nqhfc5wfn"; depends=[assertthat dplyr glue hms lifecycle lubridate pillar purrr Rcpp rlang tibble vctrs zoo]; }; tibblify = derive2 { name="tibblify"; version="0.3.0"; sha256="1hir7rb0zn9cz2yjfrg17is0ryzzxfxsan0sij0c0dh9v171cp0w"; depends=[cli lifecycle purrr rlang tibble tidyselect vctrs withr]; }; tictactoe = derive2 { name="tictactoe"; version="0.2.2"; sha256="1fx8plj5zr04xwk5hfj3zqhcknidxlzya2q14cf0m3y33a86lx42"; depends=[hash]; }; - tictoc = derive2 { name="tictoc"; version="1.1"; sha256="0ka7zd857xfqb5afn0psn0yzfv2qjb0ddxfyiq6aggbnla5qc3qj"; depends=[]; }; - tidyAML = derive2 { name="tidyAML"; version="0.0.1"; sha256="0zr2nmsyy9cx2kkg5z9nrf9mls8zg3d9lqv0vzvwzvrqc377yd88"; depends=[dplyr forcats magrittr parsnip purrr rlang rsample workflows workflowsets]; }; - tidyBdE = derive2 { name="tidyBdE"; version="0.3.2"; sha256="0qy3lrimm1ns25adb9mapc7w23v2n30a74pj4gpzkbbb53vpy90v"; depends=[dplyr ggplot2 readr scales tibble tidyr]; }; + tictoc = derive2 { name="tictoc"; version="1.2"; sha256="037jbwb58mj5asf3kr6hpf3fy9c6fkinnd8hbpfb141a2jsa8pph"; depends=[]; }; + tidier = derive2 { name="tidier"; version="0.0.1"; sha256="1l6w04szx92wcmfix8p3mvazjzclvjqcdkd7n6bf8sq3cmj8n0wa"; depends=[checkmate dplyr furrr magrittr rlang slider tidyr]; }; + tidyAML = derive2 { name="tidyAML"; version="0.0.2"; sha256="0939wymf9k4v2nh0yr1anw5jpqpxnrq8b5c5ikdyrdk70zfpd67j"; depends=[dplyr forcats magrittr parsnip purrr rlang rsample workflows workflowsets]; }; + tidyBdE = derive2 { name="tidyBdE"; version="0.3.3"; sha256="0rs97bsab1fmyrd6069i619vm1bwj8yvinv0libx59i0bac6lnhy"; depends=[dplyr ggplot2 readr scales tibble tidyr]; }; tidyCDISC = derive2 { name="tidyCDISC"; version="0.2.1"; sha256="06pri456bqmvnfna7g092ccd7lqr3bc9gdnw67d7nfz91qwnsny6"; depends=[cicerone config dplyr DT GGally ggcorrplot ggplot2 glue golem gt haven IDEAFilter plotly purrr rlang rmarkdown shiny shinyjs shinyWidgets sjlabelled stringr survival tidyr timevis tippy]; }; tidyCpp = derive2 { name="tidyCpp"; version="0.0.6"; sha256="1w6fr4q137ar6557a8x1jpmfmlsga59621jwq0sf37bnn535i4gw"; depends=[]; }; tidyDisasters = derive2 { name="tidyDisasters"; version="0.1.1"; sha256="071hr4dmk5pq8m8b58b8zcz5kpgxnqw2l4rb2vkq1zhsrk9ynxmg"; depends=[]; }; tidyEmoji = derive2 { name="tidyEmoji"; version="0.1.0"; sha256="03amap4lik63nqdznncg8ymw74avmrhci36gy8ckwwskrn9gqw93"; depends=[dplyr emoji purrr stringr tibble tidyr]; }; tidyHeatmap = derive2 { name="tidyHeatmap"; version="1.8.1"; sha256="19gpp8p3ms60qzny26vx8h7x4zl495ynrfrvf1nndhm2njbx6i4m"; depends=[circlize ComplexHeatmap dendextend dplyr lifecycle magrittr patchwork purrr RColorBrewer rlang tibble tidyr viridis]; }; tidyLPA = derive2 { name="tidyLPA"; version="1.1.0"; sha256="1lyd8cx90j49bm65330i57jyimiid75c2pvnzk7dcp6mbmglvimz"; depends=[dplyr ggplot2 gtable mclust mix MplusAutomation tibble]; }; - tidyREDCap = derive2 { name="tidyREDCap"; version="1.1.0"; sha256="15rz0f04lv43m27dwh1dly2q11x2pkrx16l1lfg4l2091l6xfxkq"; depends=[cli dplyr janitor labelVector magrittr purrr REDCapR rlang stringr tibble tidyr tidyselect]; }; + tidyREDCap = derive2 { name="tidyREDCap"; version="1.1.1"; sha256="1k06bnxvq5k4j005h269n5ivxn1vr2i8nkdg048q8m7vmpanwz4m"; depends=[cli dplyr janitor labelVector magrittr purrr REDCapR rlang stringr tibble tidyr tidyselect vctrs]; }; tidyRSS = derive2 { name="tidyRSS"; version="2.0.7"; sha256="1v9c4cjh2apxsk5s1qyqg5pb02l83qhlg6bj684zvdmc4fqac6zw"; depends=[anytime dplyr glue httr jsonlite magrittr purrr rlang tibble tidyselect vctrs xml2]; }; - tidySEM = derive2 { name="tidySEM"; version="0.2.3"; sha256="0l1b006kl46zgqqxjr339s3is9i6vb08lrwrrh8kvlwi40iipyjy"; depends=[blavaan ggplot2 gtable igraph lavaan MplusAutomation OpenMx psych]; }; + tidySEM = derive2 { name="tidySEM"; version="0.2.4"; sha256="13zm3i54ricxrrvvz8cdbbn7lykxm20f2gi19mvqvvpri57kzhcp"; depends=[bain blavaan car dbscan future_apply ggplot2 gtable igraph lavaan Matrix MplusAutomation OpenMx progressr psych RANN]; }; tidyUSDA = derive2 { name="tidyUSDA"; version="0.4.0"; sha256="0wbhrhb87zrk93b1nhll6pqhh4gpxf3x3j28m09vgzdggxhk9w5y"; depends=[checkmate crayon dplyr fuzzyjoin ggplot2 httr jsonlite magrittr sf tigris]; }; tidybayes = derive2 { name="tidybayes"; version="3.0.4"; sha256="1gfpjcf8n3rh5g5ii3kd1msbqkq4ncixwydhmxqmaf2q7j8pfz1z"; depends=[arrayhelpers coda dplyr ggdist ggplot2 magrittr posterior rlang tibble tidyr tidyselect vctrs withr]; }; tidybins = derive2 { name="tidybins"; version="0.1.0"; sha256="1kwwz0y1anlf1l8yl80xyiggdi8alsh0drb1529rijfk2jxlljg9"; depends=[badger ClusterR dplyr framecleaner ggplot2 janitor lubridate magrittr OneR purrr rlang rlist scales strex stringr tibble tidyselect xgboost]; }; tidyboot = derive2 { name="tidyboot"; version="0.1.1"; sha256="0nss1ci763g9p5f33g163ppamx72axc8xhrils0cql3ka8439pmn"; depends=[dplyr modelr purrr rlang tidyr]; }; tidycat = derive2 { name="tidycat"; version="0.1.2"; sha256="1c8ib5zcz2xk7yrzh4j5q4ccv6lnw58sh2ggqn04k2wp0gcj2zcs"; depends=[dplyr forcats magrittr stringr tibble tidyr]; }; - tidycensus = derive2 { name="tidycensus"; version="1.3.2"; sha256="05f58fa37mmky5jfl8gbnday9d3c99prhngggdv3qjn934zk4iya"; depends=[crayon dplyr httr jsonlite purrr rappdirs readr rlang rvest sf stringr tidyr tidyselect tigris units xml2]; }; + tidycensus = derive2 { name="tidycensus"; version="1.4"; sha256="12sc3riy5drnc2zs4xd35v6bj6amgc1k2wyagxnwxg07xr1nqi5k"; depends=[crayon dplyr httr jsonlite purrr rappdirs readr rlang rvest sf stringr tidyr tidyselect tigris units xml2]; }; tidycharts = derive2 { name="tidycharts"; version="0.1.3"; sha256="1clpjyvqv6xhv7n64xh411x867fnn581qckzcwn18xbbbs56k6nn"; depends=[htmlwidgets knitr lubridate magick magrittr rlang rsvg stringr testthat]; }; tidyclust = derive2 { name="tidyclust"; version="0.1.2"; sha256="1gfqk2aap3j96fn1wpp6xz7z415x5l9a8jd9hrcm4978dg4r00r7"; depends=[cli dials dplyr flexclust foreach generics glue hardhat modelenv parsnip prettyunits Rfast rlang rsample tibble tidyr tune vctrs]; }; tidycmprsk = derive2 { name="tidycmprsk"; version="0.2.0"; sha256="1smcjicx7xz07iagzv2a87kc9q0j2sgpnakhv7dc18zw2ndpls1q"; depends=[broom cli cmprsk dplyr ggplot2 gtsummary hardhat purrr rlang stringr survival tibble tidyr]; }; @@ -18216,10 +18442,11 @@ in with self; { tidydr = derive2 { name="tidydr"; version="0.0.5"; sha256="16vghbd4iacw3480jzf12cm37azhz7xfql5z6hzh8nin48wsawiw"; depends=[ggfun ggplot2 rlang]; }; tidyestimate = derive2 { name="tidyestimate"; version="1.1.0"; sha256="0cwk6clah4sapbmfl5vvcv6di39azxb07z73pypnqx4gd32kk5q7"; depends=[dplyr ggplot2 ggrepel glue rlang]; }; tidyfast = derive2 { name="tidyfast"; version="0.2.1"; sha256="1bfs2wma705nx1lpndq75ama5dr9kkg8hwpklb20csnccnfrlvf6"; depends=[data_table Rcpp]; }; - tidyfit = derive2 { name="tidyfit"; version="0.6.3"; sha256="08w4rjxra2danag4la607r9lxq7lgg1hsrvwplr9mw4i0n25i0rb"; depends=[broom crayon dials dplyr furrr magrittr MASS progressr purrr rlang rsample tibble tidyr yardstick]; }; + tidyfit = derive2 { name="tidyfit"; version="0.6.4"; sha256="0amqzqnxkv9a6ywmyqkvyqhls1mm7kqdnysg12zjhcx1bk6wg98d"; depends=[broom crayon dials dplyr furrr magrittr MASS progressr purrr rlang rsample tibble tidyr yardstick]; }; tidyformula = derive2 { name="tidyformula"; version="0.1.0"; sha256="1sz5v8l1gpci1jzs87qgxr95nr881rz5lidlfwgfi8963kgvigvg"; depends=[dplyr purrr rlang]; }; tidyfst = derive2 { name="tidyfst"; version="1.7.6"; sha256="0iz7wk58a3f55vpmw6mbx9jd1ky6p7b5dn7ljibvr2ykzw2cfxm5"; depends=[data_table fst stringr]; }; tidyft = derive2 { name="tidyft"; version="0.5.7"; sha256="00qcsr2sx8fwyil384vgppx0q72qjrkj7h5nv4mdxdi8f9h6ph2r"; depends=[data_table fst stringr]; }; + tidygam = derive2 { name="tidygam"; version="0.2.0"; sha256="1m2lzmbvxflnyqf7m0waq0svgwhqh1snc2zn3n8wjh70lkzclpkx"; depends=[cli dplyr ggplot2 glue insight magrittr mgcv rlang stringr tibble tidyr tidyselect]; }; tidygapminder = derive2 { name="tidygapminder"; version="0.1.1"; sha256="1m6bynwnw1msrzvdmy12w3ympinqpd8j3may3rwmg9941nndjv2d"; depends=[data_table dplyr readxl tidyr]; }; tidygate = derive2 { name="tidygate"; version="0.4.9"; sha256="0zs2z4xf76d9hw7zwwpd3bisjvq672smbmxl0qgjb7xdzh66cqsf"; depends=[dplyr lifecycle magrittr purrr RColorBrewer rlang scales stringr tibble tidyr viridis]; }; tidygenomics = derive2 { name="tidygenomics"; version="0.1.2"; sha256="1cnwmmmzp9kg4k7iy2kgb22bdllpnz257pv1ahy3l11zy6bl48fc"; depends=[dplyr fuzzyjoin IRanges purrr Rcpp rlang tidyr]; }; @@ -18231,8 +18458,8 @@ in with self; { tidylda = derive2 { name="tidylda"; version="0.0.2"; sha256="1zwy94gpr43dc6ld3rjmr5rkapmxji6kd3p363zl03wn5qf3wbws"; depends=[dplyr generics gtools Matrix mvrsquared Rcpp RcppArmadillo RcppProgress RcppThread rlang stringr tibble tidyr tidytext]; }; tidylo = derive2 { name="tidylo"; version="0.2.0"; sha256="07xnbycwrqg3cmbxx76drbjd0mx4s23vf3kihlc9rj4ajjx48z8r"; depends=[dplyr rlang]; }; tidylog = derive2 { name="tidylog"; version="1.0.2"; sha256="076am30ayc16wm3bilznxqzd5806yi7dx5m9yv4w7q90i7imsqk7"; depends=[clisymbols dplyr glue tidyr]; }; - tidymodels = derive2 { name="tidymodels"; version="1.0.0"; sha256="1zqdq7zwmhc19zs77x27l5ja01rhj01v8dw182j8jhy49h0alyz3"; depends=[broom cli conflicted dials dplyr ggplot2 hardhat infer modeldata parsnip purrr recipes rlang rsample rstudioapi tibble tidyr tune workflows workflowsets yardstick]; }; - tidymv = derive2 { name="tidymv"; version="3.3.2"; sha256="15qs95cw2lfzp1apl398r0iw630ad2i88pz3ap29wbn8byixj5vi"; depends=[dplyr ggplot2 magrittr mgcv rlang tibble tidyr]; }; + tidymodels = derive2 { name="tidymodels"; version="1.1.0"; sha256="1gcfisvqbxkqsf83xc79cn9nz7krddcn45cza9551h4qk853g3kq"; depends=[broom cli conflicted dials dplyr ggplot2 hardhat infer modeldata parsnip purrr recipes rlang rsample rstudioapi tibble tidyr tune workflows workflowsets yardstick]; }; + tidymv = derive2 { name="tidymv"; version="3.4.2"; sha256="0jl6lhi47nz8a7crlqmrqm0cnj4gx3l06gxjvdw8p52y706a478a"; depends=[dplyr ggplot2 lifecycle magrittr mgcv rlang tibble tidyr]; }; tidync = derive2 { name="tidync"; version="0.3.0"; sha256="0w8i8h3rr7mjxbc5zasw6zi9v95z51635pdl91ip4awgkrkyn9f3"; depends=[dplyr forcats magrittr ncdf4 ncmeta purrr rlang RNetCDF tibble tidyr]; }; tidypaleo = derive2 { name="tidypaleo"; version="0.1.3"; sha256="18z3w068q011a8xw75qm7wd6hqc358q38a5hd2lmm29p65c8mjxj"; depends=[digest dplyr ggplot2 ggstance purrr rioja rlang scales stringr styler tibble tidyr tidyselect vctrs withr]; }; tidyplus = derive2 { name="tidyplus"; version="0.0.2"; sha256="0a8wdl2jz4fijfnzph0g9a1861lvgspl5ppa2hwihrxwr4srv98g"; depends=[chk dplyr rlang stringi stringr tibble tidyr tidyselect vctrs]; }; @@ -18247,18 +18474,19 @@ in with self; { tidyrules = derive2 { name="tidyrules"; version="0.1.5"; sha256="04y6pnrp132sckjpp9g8yl0z7glcsx9dcfdpa8r27wsc2g491i63"; depends=[assertthat magrittr partykit purrr stringr tibble]; }; tidyselect = derive2 { name="tidyselect"; version="1.2.0"; sha256="0fwy4qp3j0ksy15rkrh3588h7wa8c21h0fzx5s762zg34yvjd3ak"; depends=[cli glue lifecycle rlang vctrs withr]; }; tidyseurat = derive2 { name="tidyseurat"; version="0.5.9"; sha256="0n9xll4lgapywkrfwlvj64wzqashafqvhygi5jzbkcif0f2l9b2b"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar pkgconfig plotly purrr rlang Seurat SeuratObject stringr tibble tidyr tidyselect ttservice vctrs]; }; - tidysmd = derive2 { name="tidysmd"; version="0.1.1"; sha256="0in324c940zlm2fg5r7hdybq0a8f31nvy8khzf4yq7dqxgki2n1b"; depends=[dplyr purrr rlang smd tidyr tidyselect]; }; + tidysmd = derive2 { name="tidysmd"; version="0.2.0"; sha256="1sbn4x59wdshc0xhxycvkf6ssm3w3pgfl64r8s3m77piara2i0dm"; depends=[dplyr purrr rlang smd tidyr tidyselect]; }; tidysq = derive2 { name="tidysq"; version="1.1.3"; sha256="1k4ws5zymrc93rlh8118xxfgjdwr7g99cyhzjp34abcsip1c3g21"; depends=[checkmate cli crayon dplyr pillar Rcpp testthat tibble vctrs]; }; - tidystats = derive2 { name="tidystats"; version="0.5.1"; sha256="00fzma64fjih70yp04hpragh9afhn11hdqydagr0yalwg3ixx5iq"; depends=[dplyr jsonlite purrr readr stringr tibble tidyr]; }; + tidystats = derive2 { name="tidystats"; version="0.5.2"; sha256="1y4jf1rvj8k256shiy2zb68vmvla8sxjr2ynnys5mw2i4ap326kj"; depends=[dplyr jsonlite purrr readr stringr tibble tidyr]; }; tidystopwords = derive2 { name="tidystopwords"; version="0.9.1"; sha256="00kak679ddwdgvqmjs5312w9k8sapc1n7dxipgqqfjqw2xy0h1jh"; depends=[dplyr]; }; tidystringdist = derive2 { name="tidystringdist"; version="0.1.4"; sha256="1srxh5gyspcghzvnmpyq36ky608ipf71vv0s1jg01mgf2i5pdkf4"; depends=[attempt rlang stringdist tibble]; }; - tidysynth = derive2 { name="tidysynth"; version="0.1.0"; sha256="0rckvp51gp22bjcwcszdhhn51bzjivwndnvjcf67h1vmyqa3zjkj"; depends=[dplyr forcats ggplot2 kernlab LowRankQP magrittr optimx rgenoud rlang tibble tidyr]; }; - tidytable = derive2 { name="tidytable"; version="0.10.0"; sha256="0dm0iirlz255zrmwgl0d7am65rsrhwlqmdkgcy6909hm0n71dvry"; depends=[data_table glue lifecycle magrittr pillar rlang tidyselect vctrs]; }; + tidysynth = derive2 { name="tidysynth"; version="0.2.0"; sha256="1arvjv3w6my47xwrzxrnpb2npskhqb9xmqhszgrxcqa55s1x6p15"; depends=[dplyr forcats ggplot2 kernlab magrittr optimx rgenoud rlang tibble tidyr]; }; + tidytable = derive2 { name="tidytable"; version="0.10.1"; sha256="1szyzfh0679i3q87j9c2bdsal6lg7fpis5jwasqvgig8zyi20ild"; depends=[data_table glue lifecycle magrittr pillar rlang tidyselect vctrs]; }; tidytags = derive2 { name="tidytags"; version="1.1.1"; sha256="0x4gv6k9ccs9r6s73xsk25ixwgmz5818s6jpndg0yqczybw3y5dm"; depends=[dplyr googlesheets4 rlang rtweet stringr]; }; tidyterra = derive2 { name="tidyterra"; version="0.4.0"; sha256="02d6cz7w4vj2zsyrzmmv0wcdrlnp9564yk0qiiwl68hl6zrfb15y"; depends=[cli data_table dplyr ggplot2 magrittr rlang scales sf terra tibble tidyr]; }; tidytext = derive2 { name="tidytext"; version="0.4.1"; sha256="05f8209qx1rvddnkl0h05yig09xahs8lqgq9w5dvdiwarji50rsj"; depends=[cli dplyr generics janeaustenr lifecycle Matrix purrr rlang stringr tibble tokenizers vctrs]; }; tidytidbits = derive2 { name="tidytidbits"; version="0.3.2"; sha256="1zbm165bimjag7azhy77zlzqilygybqxz35q4r3d7hi7p6m96w78"; depends=[dplyr extrafont forcats magrittr purrr rlang stringr tibble tidyr tidyselect]; }; - tidytransit = derive2 { name="tidytransit"; version="1.5.0"; sha256="1cbny3vijlw7hamvznq9dk0546mprrkf6il8zdldkkb6y1pznab6"; depends=[data_table digest dplyr geodist gtfsio hms rlang sf]; }; + tidytlg = derive2 { name="tidytlg"; version="0.1.1"; sha256="13008i7n1clqfpxchf8bz89k2i7bclgiyzab0ibvhxf402fs0ycc"; depends=[assertthat cellranger crayon dplyr forcats ggplot2 glue huxtable magrittr png purrr readxl rlang rstudioapi stringr tibble tidyr tidyselect usethis]; }; + tidytransit = derive2 { name="tidytransit"; version="1.5.1"; sha256="0q1zkvwzq0c2y6hnpf1wmwd38ll8mgfkyi9bmsgk5cf88arslaaq"; depends=[data_table digest dplyr geodist gtfsio hms rlang sf]; }; tidytreatment = derive2 { name="tidytreatment"; version="0.2.2"; sha256="04z3afharkqyjk5kk097kpqlrmvq5220bsdlzmbzwl5k56vgxgxx"; depends=[dplyr purrr readr rlang tidybayes tidyr]; }; tidytree = derive2 { name="tidytree"; version="0.4.2"; sha256="0phmvbpsxx85fvw4000d160qh8njrgmzpr3ja0gy59dgv1k1m0yb"; depends=[ape cli dplyr lazyeval magrittr pillar rlang tibble tidyr tidyselect yulab_utils]; }; tidytuesdayR = derive2 { name="tidytuesdayR"; version="1.0.2"; sha256="00xlbmgg8779ypqcrdgn56lyklqknhh3pmqfc49f84xa5hrkyjfs"; depends=[httr jsonlite lubridate magrittr purrr readr readxl rstudioapi rvest usethis xml2]; }; @@ -18272,29 +18500,29 @@ in with self; { tigger = derive2 { name="tigger"; version="1.0.1"; sha256="130iwg2ds4j56a9ndg1p7qv4s6qbbahmm9fwmy6iak02ds1r0zyl"; depends=[alakazam doParallel dplyr foreach ggplot2 gridExtra gtools iterators lazyeval rlang stringi tidyr]; }; tightClust = derive2 { name="tightClust"; version="1.1"; sha256="0vqkp2g6z8y3b6dhzglmacjhf2qi1sg80kb941mwfafin2k40zbm"; depends=[]; }; tigreBrowserWriter = derive2 { name="tigreBrowserWriter"; version="0.1.5"; sha256="0izgx1khci6qc6pz85dxj75kzxvpr30l0vhcv9476jrcbwqs4k8m"; depends=[DBI RSQLite]; }; - tigris = derive2 { name="tigris"; version="2.0.1"; sha256="132d0w5rdci7r7q0n4z1ac3iln42zby6np1lkmlngfgz2466nz6q"; depends=[dplyr httr magrittr rappdirs sf stringr uuid]; }; + tigris = derive2 { name="tigris"; version="2.0.3"; sha256="1kk1dbg6fs711bg5v6p97rbmvffxfhyc1vkmvpnh51ffkmd2hihv"; depends=[dplyr httr magrittr rappdirs sf stringr uuid]; }; tiktokadsR = derive2 { name="tiktokadsR"; version="0.1.0"; sha256="17x6nxp88iji376qhvvkgxyfcbxz9bvfgv9kmhiznlhq64srdjfs"; depends=[jsonlite]; }; tikzDevice = derive2 { name="tikzDevice"; version="0.12.4"; sha256="1x9nns15g2f6062grdvzy8sfj460xvsqyiyr3ylc0z425s0jj85c"; depends=[filehash png]; }; - tiledb = derive2 { name="tiledb"; version="0.19.0"; sha256="1zw7nlqfzqmghhsraynwiaadafjmjiagn091k6r110dfvd9y7vpl"; depends=[nanotime Rcpp spdl]; }; + tiledb = derive2 { name="tiledb"; version="0.19.1"; sha256="1mp3yidjd7mm9g6ggcsn7hcj2m75zqpz6mmd6svbdzp5zajji4rn"; depends=[nanotime Rcpp spdl]; }; tilegramsR = derive2 { name="tilegramsR"; version="0.2.0"; sha256="11cnyvlghg8z7lr9ahzsjpyjrqnxqs77wdcydqvavrsqj745xvi2"; depends=[sf sp]; }; tilemaps = derive2 { name="tilemaps"; version="0.2.0"; sha256="06pwwlndb7nvw2b0h0fak3vnpbi11mxsby43qm9ng3k3sqwrqjz2"; depends=[clue ggplot2 igraph lwgeom sf smoothr]; }; tiler = derive2 { name="tiler"; version="0.2.5"; sha256="02sxc70s8v5b5lf1fpv1ig1hmpkamsmzbgpk6zds504gh9kz7qxy"; depends=[png raster rgdal sp]; }; tilting = derive2 { name="tilting"; version="1.1.1"; sha256="0srvxjv3sg35n7f8pam45ny1z1dxwqjkrz9d91hf67a3fi34f5gk"; depends=[mvtnorm]; }; timbeR = derive2 { name="timbeR"; version="2.0.1"; sha256="01lpx4pk22k9j4sbbhr9z7r6spfdrfazpxsyp7cxndrswa8m83zq"; depends=[cowplot dplyr ggplot2 magrittr miniUI shiny tibble tidyr]; }; - timbr = derive2 { name="timbr"; version="0.2.0"; sha256="0h7fs9w9npvm68yriblbaczqm409macmr0xsw6lw5vp7rd8kcpqx"; depends=[cli dplyr memoise pillar purrr rlang tibble tidygraph vctrs]; }; + timbr = derive2 { name="timbr"; version="0.2.2"; sha256="1bz368s1iryxrrxsvq2sbzlm2cnrfqxafzvbsgm6smb3skwyp3sb"; depends=[cli dplyr lifecycle memoise pillar purrr rlang tibble tidygraph vctrs]; }; time_slots = derive2 { name="time.slots"; version="0.2.0"; sha256="04qh8cgk3ixvvc67m2hal935m5kisq2n67cvjmsg1frz1bf2yvld"; depends=[dplyr ggfittext ggplot2 lubridate scales]; }; timeDate = derive2 { name="timeDate"; version="4022.108"; sha256="1vyfpz2ac43c0s6a4j4d0xfc430mwgw3syf03xszzggnw97rp555"; depends=[]; }; timeLineGraphics = derive2 { name="timeLineGraphics"; version="1.0"; sha256="06i2palpc19g0480d53232fj4jd5j0brhdkmj5vcr6p58qsvhyhm"; depends=[berryFunctions magick pdftools R2HTML]; }; timeR = derive2 { name="timeR"; version="1.2.0"; sha256="0lkx2ilbzq29w1c9ssya4f0za0sj7y30y9ml4v3zc21c1la0b6vi"; depends=[lubridate R6]; }; timeROC = derive2 { name="timeROC"; version="0.4"; sha256="1qxijg7hazc8bifwj2254ig2p3cbrp9p0bsyhhh3aikf1rg113v1"; depends=[mvtnorm pec]; }; timeSeq = derive2 { name="timeSeq"; version="1.0.4"; sha256="0m59g12dmnwpmwjmyb9x6z53x3gjmxcaxqva2dlbazsqkbzgaayp"; depends=[gss lattice mgcv pheatmap reshape]; }; - timeSeries = derive2 { name="timeSeries"; version="4021.105"; sha256="1k6vihbs20m7zjrxh13y9mmsvnia3844c7j13p0b7m5i9fb6rqxz"; depends=[timeDate]; }; + timeSeries = derive2 { name="timeSeries"; version="4030.106"; sha256="1sh31brmvfxvlxh2qyk3qrsqw6w3bykh7dd6m35d24gfl0qqxxr5"; depends=[timeDate]; }; timechange = derive2 { name="timechange"; version="0.2.0"; sha256="1wgpab9dvmvkfb1p1arj0knb8qal9hazbhx5jkpxl8r10l420q1x"; depends=[cpp11]; }; timedelay = derive2 { name="timedelay"; version="1.0.11"; sha256="0hr5a2m621ybvl4qyx1xgwzviszj4ccvb149yclds9z87r5h2gm4"; depends=[MASS mvtnorm]; }; timedeppar = derive2 { name="timedeppar"; version="1.0.2"; sha256="0jazddjqrgipvpdxlqh8y3clhhad22syqw4hhaj19cdbxpvivgvw"; depends=[mvtnorm]; }; timelineS = derive2 { name="timelineS"; version="0.1.1"; sha256="076w8ckzzl59bc1gnwjgdwynnz86320hyfmzb0k26hl3k13jlmxs"; depends=[dplyr ggplot2 lubridate magrittr]; }; timeordered = derive2 { name="timeordered"; version="0.9.9"; sha256="0rfga5i6kckmlz2dzqb1pp634dl93wxp7v3kisxlbjl7mgnbck3k"; depends=[igraph plyr]; }; - timeperiodsR = derive2 { name="timeperiodsR"; version="0.6.2"; sha256="09vwp04j7n176xs1lbdmbyi557byx6fdvqyjay1785hkb9ivws5q"; depends=[lubridate]; }; + timeperiodsR = derive2 { name="timeperiodsR"; version="0.7.1"; sha256="0fb9xwpdg38nnghjarlp2svjs225ng3h8p7vxnsy7rh0g3qck450"; depends=[lubridate]; }; timereg = derive2 { name="timereg"; version="2.0.5"; sha256="1vzphh7hfkc65r61wms1dh58i3ng7340whqkw947yb4nyvmdvld0"; depends=[lava numDeriv survival]; }; timeseriesdb = derive2 { name="timeseriesdb"; version="1.0.0-1.1.2"; sha256="17j1nxpgbfbzmfc6zrgcw68ri9ncslic9qdkxkdpfr2gi1w61bpc"; depends=[data_table DBI jsonlite RPostgres xts]; }; timetk = derive2 { name="timetk"; version="2.8.3"; sha256="1ad5qba68am81pmlbkbp6baq0aicikabnyqv4sijcql567vya8iy"; depends=[anytime assertthat dplyr forcats forecast generics ggplot2 hms lubridate padr plotly purrr readr recipes rlang rsample slider stringi stringr tibble tidyr tidyselect timeDate tsfeatures xts zoo]; }; @@ -18306,21 +18534,21 @@ in with self; { tint = derive2 { name="tint"; version="0.1.4"; sha256="1vkdgxxgcj3qk3858sp3zi7c2id3dq0zxz23xd4i8lgbqgvvh2s3"; depends=[htmltools knitr rmarkdown]; }; tinter = derive2 { name="tinter"; version="0.1.0"; sha256="02hfw2720qn70x0piahm8cy2ajsb5bqapr4vyvknm4v1yka1wmw3"; depends=[chk]; }; tinyProject = derive2 { name="tinyProject"; version="0.6.1"; sha256="0cflnfp5mib3j1y3n5yvi867h5a7z6xr6163gq9y9b6nrl2skxfk"; depends=[brew R_utils]; }; - tinyarray = derive2 { name="tinyarray"; version="2.2.9"; sha256="1zqv2r8jffzlxmhp7x0i5my3kbz6lyqni06nhh2z85yqzn68lhb7"; depends=[BiocManager clusterProfiler dplyr ggplot2 limma magrittr org_Hs_eg_db patchwork pheatmap stringr survival survminer tibble]; }; + tinyarray = derive2 { name="tinyarray"; version="2.3.0"; sha256="0q3j0ipv2ds9zfp15czl82p76qrxd0irwbjvz0jqdzivrkqcn231"; depends=[BiocManager clusterProfiler dplyr ggplot2 limma magrittr org_Hs_eg_db patchwork pheatmap stringr survival survminer tibble]; }; tinylabels = derive2 { name="tinylabels"; version="0.2.3"; sha256="0knqcdnlrydbfklizvx9mp304sjz6wp54nbx1zhy2g2730nwa61k"; depends=[]; }; tinyscholar = derive2 { name="tinyscholar"; version="0.1.7"; sha256="0cd9xbm1gk0v241fqa42hly40vkqb6hcvi8jp9iqq8sgmrs33adh"; depends=[curl dplyr ggplot2 gt jsonlite magrittr purrr R_utils rlang rvest stringr xml2]; }; - tinysnapshot = derive2 { name="tinysnapshot"; version="0.0.2"; sha256="05b6zs93wg1c6c1nv61x30hhwjmr2m8qvsxsfdajnq3dlm6rpqqr"; depends=[diffobj magick tinytest]; }; + tinysnapshot = derive2 { name="tinysnapshot"; version="0.0.3"; sha256="1f8j5v9j3n6nv9lsp05jfjq8hph91lx61vbqmw7iizqcwgqfhxbx"; depends=[diffobj magick tinytest]; }; tinyspotifyr = derive2 { name="tinyspotifyr"; version="0.2.2"; sha256="19nicp1ml73lylja2np52rcc070maxm9286fjm7bfx3zsblxmakc"; depends=[httr jsonlite]; }; tinytest = derive2 { name="tinytest"; version="1.4.1"; sha256="0x0w1fiqd98vmpz8yrp9ig0ry1wfr16g6bkjzd2a8sq9gn417z7n"; depends=[]; }; - tinytex = derive2 { name="tinytex"; version="0.44"; sha256="03k26cm5chlysmi416zd506asv0gbmxs5i0j1fc0ygsrfh94r8dg"; depends=[xfun]; }; + tinytex = derive2 { name="tinytex"; version="0.45"; sha256="0b79fvrjifkajspkjga1hmxsj3877xjz0nv8dg581bw0kv8bnbqc"; depends=[xfun]; }; tinytiger = derive2 { name="tinytiger"; version="0.0.4"; sha256="17j5lxlbg6jyw5zpbgaxjhnydiiyrl2d010s5wq8p7jx16sji0w1"; depends=[cli curl glue rlang sf]; }; tip = derive2 { name="tip"; version="0.1.0"; sha256="11khhkszd5a81q0h6acx5rvp1k97qj1srcvz2jilwf3v6nrz7daz"; depends=[changepoint doParallel foreach GGally ggplot2 igraph LaplacesDemon mniw network rlang]; }; tipa = derive2 { name="tipa"; version="1.0.5"; sha256="1mdjpbdbgd5n22l7fc0bfansh536ib1bgjaxzrl8g534cjxdnhgl"; depends=[optimr]; }; tipitaka = derive2 { name="tipitaka"; version="0.1.2"; sha256="0xf64bpzwywwjm0135c7zjn4ha0h1zj36rj2d4h8dskiq9z90xqi"; depends=[cpp11 dplyr magrittr stringi stringr]; }; - tipmap = derive2 { name="tipmap"; version="0.3.9"; sha256="186k7d4hvbk5yrz0h23s2k1nakd2fjsc38jj4c0w6f94ldnbp00k"; depends=[dplyr ggplot2 purrr RBesT]; }; + tipmap = derive2 { name="tipmap"; version="0.4.1"; sha256="0712jric3qnp6d036mq9261lbm462n8bwi49cx03sf2zrw7s90sz"; depends=[dplyr ggplot2 purrr RBesT]; }; tippy = derive2 { name="tippy"; version="0.1.0"; sha256="00c9v07ax7l0x5wpx3ca8hqvdqs3p62d58igp51rsbh9x1ylgjcn"; depends=[htmltools htmlwidgets jsonlite shiny]; }; tipr = derive2 { name="tipr"; version="1.0.1"; sha256="0lx6s0yiyl26gn49xlydyl49b7qb3rl94lahlcyhryayp8sns2ni"; depends=[glue purrr sensemakr tibble]; }; - tipsae = derive2 { name="tipsae"; version="0.0.12"; sha256="0g4js7fx51yliq5lkzm8p3180a5wyp17l53nx4iix36i3k17arn9"; depends=[BH broom ggplot2 ggpubr nlme Rcpp RcppEigen RcppParallel Rdpack rstan shiny sp StanHeaders]; }; + tipsae = derive2 { name="tipsae"; version="0.0.13"; sha256="0fyw4q13cpdk5gzx3ny212jblhzzkbnk2vm7w5rs9fxdfpfkcqwm"; depends=[BH broom ggplot2 ggpubr nlme Rcpp RcppEigen RcppParallel Rdpack rstan shiny sp StanHeaders]; }; tis = derive2 { name="tis"; version="1.39"; sha256="1sq3acz8mybsbxng5fga4ynqvh1ly9hs3ca727jiyx1gam712mis"; depends=[]; }; titanic = derive2 { name="titanic"; version="0.1.0"; sha256="0mdmh0ciwfig00847bmvp50cyvj8pra6q4i4vdg7md19z5rjlx3j"; depends=[]; }; titeIR = derive2 { name="titeIR"; version="0.1.0"; sha256="047vidn3zydbjijwgz6qm2d9j2ny8ng2sv5jzm8zb300y7k2426c"; depends=[Iso]; }; @@ -18329,7 +18557,7 @@ in with self; { tkRplotR = derive2 { name="tkRplotR"; version="0.1.7"; sha256="1n8ihn6ys68dzfxi1wqdbq00qm41fwjw2vn9i3wyb4w1j73v82zy"; depends=[]; }; tkrplot = derive2 { name="tkrplot"; version="0.0-27"; sha256="19bj4wn1fs4wrx5k4gakhpz4q59fgx0584wyaw7hnh0ljj8i34n9"; depends=[]; }; tlars = derive2 { name="tlars"; version="0.0.1"; sha256="1q4hq4fp7hldgnvyd6nzif231x85j16gwa69cljixfhgyxs95rlf"; depends=[Rcpp RcppArmadillo]; }; - tldr = derive2 { name="tldr"; version="0.2.3"; sha256="0xagl35kz6vpqzxdgpmvjafgqrln07k65gnw8kfykj4rg7blfsxq"; depends=[ggplot2 reshape2 tableone]; }; + tldr = derive2 { name="tldr"; version="0.3.0"; sha256="0p02ivcy5as46ffds1pg3ibhq0f06lrs2dygfair32cp21x0y9f7"; depends=[ggplot2 reshape2 tableone]; }; tlm = derive2 { name="tlm"; version="0.1.5"; sha256="1iw08pa70nb25fnv64834s5c8vl456a2rcng7x6v9vs5q37610g6"; depends=[boot]; }; tlrmvnmvt = derive2 { name="tlrmvnmvt"; version="1.1.2"; sha256="0zcf4pz7dz49hz8srr49rvksx7jfjss1sp4zlipbx89aq0l2l94p"; depends=[BH Rcpp RcppEigen]; }; tls = derive2 { name="tls"; version="0.1.0"; sha256="183b5m70s2whlgp9s1gb4xnylhlp4hnh3lw6b8f2vx4kahaid763"; depends=[]; }; @@ -18350,7 +18578,7 @@ in with self; { tmod = derive2 { name="tmod"; version="0.50.13"; sha256="160aibvkz4ilyaig3bvkam6g96cngaynwsfrzh6vpq9xyraqxpix"; depends=[beeswarm ggplot2 ggrepel gplots pheatmap plotwidgets purrr RColorBrewer rlang tagcloud tibble tidyr tidyselect XML]; }; tmplate = derive2 { name="tmplate"; version="0.0.3"; sha256="1w04bmir23ip3c7janix8i2qhdnmlg78jrrjlykl95vnsvjwld6g"; depends=[tRnslate]; }; tmpm = derive2 { name="tmpm"; version="1.0.3"; sha256="1fqk39zyc07gh0ygi7pfljlnj6ih37jsb7bcxm05zcd4796wil8j"; depends=[reshape2]; }; - tmsens = derive2 { name="tmsens"; version="0.2.0"; sha256="0ifgzkmwdkiq6x0y0n1qsf10ncir5cdfcb186pg3w6lpkh34v3mm"; depends=[]; }; + tmsens = derive2 { name="tmsens"; version="0.3.0"; sha256="0xdcmz2mqfb7agjgmkv4kgschsdlxqsjv5z30z8bpqxbi45x9ry0"; depends=[]; }; tmt = derive2 { name="tmt"; version="0.3.1-2"; sha256="02b7q5qcpa0wmxilqhzsy6mammhwa2sm3kjzwvigm3jc801z90h7"; depends=[ggplot2 Rcpp]; }; tmvmixnorm = derive2 { name="tmvmixnorm"; version="1.1.1"; sha256="0i1g3598d43azyy1bsrvkjybqa5cd991fpmfqi5wv5703zaha2fj"; depends=[MASS]; }; tmvnsim = derive2 { name="tmvnsim"; version="1.0-2"; sha256="03xsvsg9bqvgl98ywid3h91mmlhax5s6wvmypp3hq91vmc5kvxlp"; depends=[]; }; @@ -18379,26 +18607,25 @@ in with self; { topoDistance = derive2 { name="topoDistance"; version="1.0.2"; sha256="1n6108giihc4aa1871m558s2z96m766ysvhak5b6zg1bnvpdj0l8"; depends=[gdistance plotly raster RColorBrewer scales sp]; }; topologyGSA = derive2 { name="topologyGSA"; version="1.4.7"; sha256="073n8bkrapk6il3izqr3bmcdp7yc29yzpbyzh6fvy9rg0x4d3g0z"; depends=[fields graph gRbase qpgraph]; }; toposort = derive2 { name="toposort"; version="1.0.0"; sha256="1k534jznd3x0kc1x37rk3148a3y2vg51gv3im8f16jpwzgqwk3l1"; depends=[glue rlang vctrs]; }; - topr = derive2 { name="topr"; version="1.1.4"; sha256="1agbjm1px0cpkb4qd58p0fxi9yy4iw0l0galgfishda0r1iphmlk"; depends=[dplyr egg ggplot2 ggrepel gridExtra magrittr scales stringr tidyr toprdata]; }; + topr = derive2 { name="topr"; version="1.1.7"; sha256="0pnwj0pq2xsdd7iydpd3ix9vxxhdm4y7zhabd8vl3xzh2y9scx5n"; depends=[dplyr egg ggplot2 ggrepel gridExtra magrittr scales stringr tidyr toprdata]; }; toprdata = derive2 { name="toprdata"; version="1.0.2"; sha256="1zn8w1c74nxm67xzk556zirhnfyi82wk34amy5a869a15lwchhaz"; depends=[]; }; topsis = derive2 { name="topsis"; version="1.0"; sha256="056cgi684qy2chh1rvhgkxwhfv9nnfd7dfzc05m24gy2wyypgxj3"; depends=[]; }; tor = derive2 { name="tor"; version="1.1.2"; sha256="1s34hzw3a4cm9gk85fcxgxwmn2xc7njs1iw1snd91id3gdl6vppx"; depends=[fs readr rlang tibble]; }; - torch = derive2 { name="torch"; version="0.9.1"; sha256="03qbdws6j5v2vmdgdnwfd0248s2qirnxpm9v4302vqlq3c0i83c2"; depends=[bit64 callr cli coro ellipsis glue magrittr R6 Rcpp rlang withr]; }; + torch = derive2 { name="torch"; version="0.10.0"; sha256="1ydazl7v10vm69573y871rq1dvbgdvlvhcs6di7xw7i4z4kg2gxm"; depends=[bit64 callr cli coro desc ellipsis glue magrittr R6 Rcpp rlang withr]; }; torchaudio = derive2 { name="torchaudio"; version="0.3.1"; sha256="1zn9z2z2yv1xjmpf5xcyxachmmbwk2g0y3nipvjgpwbqkjr7p9y6"; depends=[av fs glue rlang torch]; }; torchdatasets = derive2 { name="torchdatasets"; version="0.3.0"; sha256="1mq87sgy9v1526iy03zpslkjxx7379q6x9dqs0nslvvfwk9sry4q"; depends=[fs pins stringr torch torchvision withr zip]; }; torchopt = derive2 { name="torchopt"; version="0.1.3"; sha256="067rnic10pkd3px63bdavk6fc2s7crn3x4ys0ydxyrd23gb52mh6"; depends=[torch]; }; - torchvision = derive2 { name="torchvision"; version="0.5.0"; sha256="10saj4crzdwqwqwa5bwh0zbs7d3jmg3xrpw2klh71197g62crsc0"; depends=[abind fs jpeg magrittr png rappdirs rlang torch withr]; }; + torchvision = derive2 { name="torchvision"; version="0.5.1"; sha256="0649rgrh4fbswc3ab92af2z1hf61nbb7wf8yf5n9b9ajnvfkvxbp"; depends=[abind fs jpeg magrittr png rappdirs rlang torch withr]; }; torchvisionlib = derive2 { name="torchvisionlib"; version="0.3.0"; sha256="01l04zabja3ancay7ynb5i7knqm1gd5101sx07fbid185w5j8yh4"; depends=[glue Rcpp rlang torch withr]; }; tornado = derive2 { name="tornado"; version="0.1.2"; sha256="1fzcqpd5imhphx4cmmcjfiz38fbmhbb15bf51z6g7v51m2c3c18y"; depends=[assertthat ggplot2 gridExtra rlang scales survival]; }; tosca = derive2 { name="tosca"; version="0.3-2"; sha256="1z8svczy93lpdj7n1gk9jz8jgzkjsf886ldlkgq1mfi1j6m8557y"; depends=[data_table htmltools lda lubridate quanteda RColorBrewer stringr tm WikipediR]; }; toscmask = derive2 { name="toscmask"; version="1.2.3"; sha256="1inryfbci03klv4rlkzf20f3a0sc187lxybd4yn1dimz6f5z71ni"; depends=[]; }; toscutil = derive2 { name="toscutil"; version="2.5.0"; sha256="0mygvr5bkqy4jgnkx2ih60qp0yp1f78nigg6xk4aim9fw9312d3j"; depends=[rlang]; }; - tosr = derive2 { name="tosr"; version="0.1.2"; sha256="1jv5bh1b7x242rb97i1w6x0w76cjyva4p6w5xr5qazgz7lfm6ysb"; depends=[bibliometrix CINNA dplyr igraph magrittr rebus rlang stringr tibble tidyr]; }; totalcensus = derive2 { name="totalcensus"; version="0.6.6"; sha256="09c7hm9yys48p8pjp9kv3szbwrg9xb1xf47zya24yir0gxs7bfmi"; depends=[data_table magrittr purrr stringr]; }; touch = derive2 { name="touch"; version="0.1-6"; sha256="0w25zxxj5qaxkx64vz55qw4k4szx85ncbcam7q600ryy1kc5xxxv"; depends=[Rcpp]; }; tourr = derive2 { name="tourr"; version="0.6.2"; sha256="16cbybg9g0b8439scw5h3n1a0asnd5yvs91g6mcfipwfyzix045s"; depends=[dplyr MASS tibble]; }; toweranNA = derive2 { name="toweranNA"; version="0.1.0"; sha256="1nncjhfz0fgjhvhkfy55kjr6as6qm0n1d1mj1w1z3d6304ai6863"; depends=[FNN pdist regtools rmarkdown]; }; - toxEval = derive2 { name="toxEval"; version="1.2.0"; sha256="11rw8vjnz3kzikd59vbyiv8vc7dijpi6znyxlc7c4rpi41gs6c0m"; depends=[dplyr DT ggplot2 leaflet magrittr RColorBrewer readxl shiny shinyAce shinycssloaders shinydashboard tidyr]; }; + toxEval = derive2 { name="toxEval"; version="1.3.0"; sha256="06lzxni750d5lxlnc1wc7rrfcgc4m61blfvdb1lv60npx1iji8fl"; depends=[dplyr DT ggplot2 leaflet magrittr RColorBrewer readxl shiny shinyAce shinycssloaders shinydashboard tidyr]; }; toxpiR = derive2 { name="toxpiR"; version="1.2.1"; sha256="0n6x87gyzxsib267h0gs5b4sdkwmgjpgqzipfhlrjsnxq55q6599"; depends=[BiocGenerics pryr rlang S4Vectors tidyr]; }; tpAUC = derive2 { name="tpAUC"; version="2.1.1"; sha256="0wix9qwcidj7xfqhh7bmrpnadd9qlkvg3515gaamdxkjbz2kyydc"; depends=[pROC]; }; tpc = derive2 { name="tpc"; version="1.0"; sha256="0zkls2vf8j1rq5ryn4w295a6gcy57vr3zghyck8jwgl9pd5zcc4x"; depends=[graph pcalg]; }; @@ -18424,11 +18651,12 @@ in with self; { traineR = derive2 { name="traineR"; version="2.0.4"; sha256="11amknr1vsqbahfhaj0pxwqviiyh57jll4j3f5ihd1qzk2wxr9jz"; depends=[ada adabag dplyr e1071 gbm ggplot2 glmnet kknn MASS neuralnet nnet randomForest ROCR rpart stringr xgboost]; }; traipse = derive2 { name="traipse"; version="0.3.0"; sha256="1ln0l8dkslj8pf0h5g5pj5iwy9x05nfkp1x36dxbi5iab88cv76w"; depends=[geodist geosphere magrittr]; }; traits = derive2 { name="traits"; version="0.5.0"; sha256="04s2523wkbjqxpwllvcy7ikyfri5gldgnynjswsxdy0k945wacvz"; depends=[crul data_table hoardr httr jsonlite readr rvest taxize tibble xml2]; }; - traj = derive2 { name="traj"; version="1.3"; sha256="1rwpmjghw5nryywxa340c15iaqmap8hpvr758yvh0g73z11jq6xp"; depends=[cluster GPArotation NbClust pastecs psych]; }; + traitstrap = derive2 { name="traitstrap"; version="0.1.0"; sha256="1yq4ngpqizlcmbcypdbsxrc9kixm6b44zimyijl7404bzz6hbs5a"; depends=[dplyr e1071 fitdistrplus ggplot2 glue purrr rlang stringr tibble tidyr]; }; + traj = derive2 { name="traj"; version="1.3.1"; sha256="1v6p31q4c9k5ipa0rysqd3xrw5f7ydvp91r1d0jp17zdgz58vfpd"; depends=[cluster NbClust pastecs psych]; }; trajeR = derive2 { name="trajeR"; version="0.9.0.5"; sha256="1zy3hg1m1a5dpx494mlb72vfpng5892dcginv6rwxc2c1ggv6z86"; depends=[capushe MASS minpack_lm numDeriv Rcpp RcppArmadillo ucminf]; }; trajectories = derive2 { name="trajectories"; version="0.2-7"; sha256="09qz6yc21q54ivjnkh4rpm5m3j81h1vabjvrp9fwrcswj8y8k0y8"; depends=[lattice sp spacetime zoo]; }; trajr = derive2 { name="trajr"; version="1.4.0"; sha256="092hx27b6d0vy1pvmga1z3b245aa9gn9aw3hszbhhkkic5zfpgbq"; depends=[plotrix signal]; }; - tram = derive2 { name="tram"; version="0.8-2"; sha256="04jv6dhlrh2psrlmnfdlgmjncd6fg86r5cq82dy3z06qzh9rjvq0"; depends=[basefun Formula Matrix mlt multcomp mvtnorm sandwich survival variables]; }; + tram = derive2 { name="tram"; version="0.8-3"; sha256="1f1v5q9f74jbiqvcd5ncjp2lbkm68p46yi1w0fnlb20j4yfhp3kg"; depends=[basefun Formula Matrix mlt multcomp mvtnorm sandwich survival variables]; }; tramME = derive2 { name="tramME"; version="1.0.4"; sha256="07g8h0z43wvf7hwvqnggs0z24kq8ds3k9m4b1a5cmiziag3cm1nl"; depends=[alabama basefun coneproj lme4 MASS Matrix mgcv mlt mvtnorm nlme numDeriv RcppEigen TMB tram variables]; }; tramnet = derive2 { name="tramnet"; version="0.0-8"; sha256="19hx2hn8m5abfzp4sm0myhxlx9hp2rl7dry5izxsfjjls3h8z1n4"; depends=[basefun CVXR lhs mlr mlrMBO mlt ParamHelpers sandwich smoof tram]; }; trampoline = derive2 { name="trampoline"; version="0.1.1"; sha256="05inq5j8gvnpww6z21dzc57vilsm4gx3m274fpsamp54q85mi68s"; depends=[coro fastmap rlang]; }; @@ -18439,20 +18667,20 @@ in with self; { transfR = derive2 { name="transfR"; version="1.0.7"; sha256="0digc0i3cr3hfdlcz3myj7kwlkcspsd4wn82laswxb07nvbbi6sv"; depends=[doParallel foreach Rdpack sf stars units]; }; transforEmotion = derive2 { name="transforEmotion"; version="0.1.1"; sha256="0lnmgbsh26mazx0g1s0jxg3jk1a6vw3bsaw07viv9kx3rdf6wc46"; depends=[dplyr LSAfun osfr pbapply remotes reticulate]; }; transform_hazards = derive2 { name="transform.hazards"; version="0.1.0"; sha256="1k9p40dp3s4ylrh91cj06k4ryazw6b870yj5vdsd30j95pwnf3wi"; depends=[]; }; + transformer = derive2 { name="transformer"; version="0.1.0"; sha256="0nvgcw72mcmj3wy3bf72zahyzs3ir5f154hz03ybk9dydgfkxj8w"; depends=[attention]; }; transformmos = derive2 { name="transformmos"; version="0.1.0"; sha256="1hsp399cj6cnsysb4hm4ra075qm2fxkjhyq16m3nai51fvzkak0p"; depends=[]; }; transformr = derive2 { name="transformr"; version="0.1.4"; sha256="0h0zcsqyjxkc5g6zg79h7nq5z2rzfj93i1livwrkjj622y1br4y1"; depends=[cpp11 lpSolve rlang sf tweenr vctrs]; }; translate_logit = derive2 { name="translate.logit"; version="1.0"; sha256="1klh4aisip0q0899lbybniy38f346m66k5g929l444f26dq9snw0"; depends=[nleqslv nnet]; }; - translated = derive2 { name="translated"; version="0.1.0"; sha256="1k2z7c0qb4psc6v0srhz1pyndclvflr43l5wsiwq0lailvxvhq2m"; depends=[glue jsonlite]; }; + translated = derive2 { name="translated"; version="0.1.1"; sha256="12jd0dzbhliajg2x88kqwxpvrd1xy64sd551rsvbklfc3n7fqx09"; depends=[glue jsonlite]; }; transmdl = derive2 { name="transmdl"; version="0.1.0"; sha256="16lvcjwb7hq4a4925kqnas7c4xqw3gpbad3fcghp0qm4whyig8dg"; depends=[Rcpp RcppEigen statmod survival]; }; transmem = derive2 { name="transmem"; version="0.1.1"; sha256="1a3c5ddmh9k4f80rbk363s7rkx30qhk9ssmf7xg7rr0lwxphahf3"; depends=[cmna ggformula ggplot2 plot3D]; }; transplantr = derive2 { name="transplantr"; version="0.2.0"; sha256="1kzi8rvswsmibxqnhqd1j42y848si6cxd8hpvwi55y8s4hcylw0y"; depends=[]; }; - transport = derive2 { name="transport"; version="0.13-0"; sha256="0msz7z4mcz4s8sffqxsxjv5pwg2cwsg55fg477pr4vp3jgfznpn5"; depends=[data_table Rcpp RcppEigen]; }; + transport = derive2 { name="transport"; version="0.14-1"; sha256="1458lj4g5npr59m27c4c3444qv2wlvmzgxpd4h46ihxcp6cl9wjr"; depends=[data_table Rcpp RcppEigen]; }; transx = derive2 { name="transx"; version="0.0.1"; sha256="1xx934w4fhk2nwm5h6lf4irj83wsfp8lbplzcha5rnc7aka8pn3v"; depends=[rlang]; }; trapezoid = derive2 { name="trapezoid"; version="2.0-2"; sha256="1pqb888w0q2zhcgjn0q4na2qwbxy4i8kfk6pp2id20gh8s96sm3f"; depends=[]; }; traudem = derive2 { name="traudem"; version="1.0.1"; sha256="0qxvh5zfj14yaywjzf83v01v6n064iq16ba8g72yh0pbb8i98w9i"; depends=[cli purrr rlang sys withr]; }; traveltimeR = derive2 { name="traveltimeR"; version="1.1.4"; sha256="00mak79ixyzr2d4s8gp4hh84akh97xrdqxih483md0ybnn69j4i9"; depends=[data_table httr jsonlite RProtoBuf]; }; trawl = derive2 { name="trawl"; version="0.2.2"; sha256="1a8cvkmw7bmdljggfv26n2nrad6974spga2yw5386k70ghq56mz3"; depends=[DEoptim ggplot2 ggpubr MASS rootSolve Runuran squash TSA]; }; - treasuryTR = derive2 { name="treasuryTR"; version="0.1.6"; sha256="1m7pw2y9q03vn32y63la56l816b3yqkix1yd3j3nk6mwmdyqcyjq"; depends=[dplyr lubridate quantmod xts zoo]; }; tree = derive2 { name="tree"; version="1.0-43"; sha256="11sjkm89ql1576jy0cqbxzjdpx7qs95wbgdxg92lzkiw05nrj2lv"; depends=[]; }; tree_interpreter = derive2 { name="tree.interpreter"; version="0.1.1"; sha256="18p1x53q1hhhagglgsq2axnr9l5rpa08vxjayqqmb6rsjrkygn78"; depends=[Rcpp RcppArmadillo]; }; treeClust = derive2 { name="treeClust"; version="1.1-7"; sha256="1s7kh6q0bkixsygrip95zf1bi10ihddsa5lq9dfxd68yh8rsby6z"; depends=[cluster rpart]; }; @@ -18464,15 +18692,15 @@ in with self; { treecm = derive2 { name="treecm"; version="1.2.2"; sha256="0vrawg4vvy270dn20gb2k99xi4q89l4mjz0mm7ikpz8wxqypzq2l"; depends=[plyr]; }; treedata_table = derive2 { name="treedata.table"; version="0.1.0"; sha256="0dhnb8if5wq6hzhjg40cw80sacigqmlm7nplm1f1ay5cqx1ynfi7"; depends=[ape data_table geiger lazyeval]; }; treedater = derive2 { name="treedater"; version="0.5.0"; sha256="007rdrbv3v1z3qbyasla22rck105sqlqh93yfmxklihdydl7smfd"; depends=[ape limSolve]; }; - treediff = derive2 { name="treediff"; version="0.1"; sha256="14rf47g01xp7lgppjw5dzhh1lmnigg795zc4i1fyydggkf8zjvpd"; depends=[dplyr limma reshape2 rlang testthat]; }; + treediff = derive2 { name="treediff"; version="0.2"; sha256="0vd4b3d5a72zlql3wljh280lxabir7ksmpxng7n124dr4x5aza64"; depends=[adjclust BiocGenerics csaw data_table dplyr HiCDOC InteractionSet limma purrr reshape2 rlang SummarizedExperiment testthat]; }; treeducken = derive2 { name="treeducken"; version="1.1.0"; sha256="0i2r1l508yi0cq7fzdds0hz2k4bxm67nknybxvbyylmwnwv6a0a1"; depends=[ape apTreeshape Rcpp RcppArmadillo]; }; treefit = derive2 { name="treefit"; version="1.0.2"; sha256="0258844r50ksxjivmnvgzr8f83qz1cqfyq7j5jgyxpqps62q5v7w"; depends=[ggplot2 igraph patchwork pracma]; }; treeheatr = derive2 { name="treeheatr"; version="0.2.1"; sha256="0618j5rlq0xik9vl2l8ircnh98wzdzf9bxnfgmiqrpywgmc8r5nk"; depends=[cluster dplyr ggnewscale ggparty ggplot2 gtable partykit seriation tidyr yardstick]; }; - treemap = derive2 { name="treemap"; version="2.4-3"; sha256="1fg8gygw38x7msn32barx2irvcv8flm6wqvipnbj1qkh9w89y3q4"; depends=[colorspace data_table ggplot2 gridBase igraph RColorBrewer shiny]; }; + treemap = derive2 { name="treemap"; version="2.4-4"; sha256="1h3pas3kn8zrpdpvp9vs745q94kixw5lxkbq74l5lh0n3wkqnnn5"; depends=[colorspace data_table ggplot2 gridBase igraph RColorBrewer shiny]; }; treemapify = derive2 { name="treemapify"; version="2.5.5"; sha256="0g6bwchyn13iksv8vyc4d0c7n1zpy26x1bd6vkrm8ail98y2ia2m"; depends=[ggfittext ggplot2]; }; treemisc = derive2 { name="treemisc"; version="0.0.1"; sha256="0289grmgcvdszsb9lhgygm1dahlcn1m50lh110ny5yjh1b4627kn"; depends=[Matrix Rcpp rpart]; }; treenomial = derive2 { name="treenomial"; version="1.1.4"; sha256="0vx5x7078ccn2bsmcxdls3ymmc7jx71xzq0va0n7gyw36gi7k3nn"; depends=[ape Rcpp RcppArmadillo RcppThread]; }; - treespace = derive2 { name="treespace"; version="1.1.4.1"; sha256="177n1h4yjvfmdsyy4anwi1gfxcxxvhdlyqagn74ni3pi6mxvjp4s"; depends=[ade4 adegenet adegraphics adephylo ape combinat distory fields htmlwidgets MASS phangorn phytools Rcpp rgl RLumShiny scatterD3 shiny shinyBS]; }; + treespace = derive2 { name="treespace"; version="1.1.4.2"; sha256="0pys9pz0b8w20rgp8l33k69yrl8bn98gsqy4rld6ky3nqdd8kzks"; depends=[ade4 adegenet adegraphics adephylo ape combinat distory fields htmlwidgets MASS phangorn phytools Rcpp rgl RLumShiny scatterD3 shiny shinyBS]; }; treestartr = derive2 { name="treestartr"; version="0.1.0"; sha256="05rxy9lmb77ng4266871sd881mlp4rd5qalvsd7ps2x2j4plaqf4"; depends=[ape phytools]; }; treestructure = derive2 { name="treestructure"; version="0.1.0"; sha256="0514q53bdwv9fwd58srhr6lzw1j56fcd64hml8w4rv4wzcd6c01m"; depends=[ape Rcpp]; }; treetop = derive2 { name="treetop"; version="0.0.5"; sha256="11lyg0izlzzvds8vig8ryicg94ydapr0wgfk5rj2shxqk9mxzfiz"; depends=[geometry lidR pryr raster rasterVis RColorBrewer rgdal rgl sf shiny sp spatstat_explore spatstat_geom stars]; }; @@ -18483,17 +18711,16 @@ in with self; { tremendousr = derive2 { name="tremendousr"; version="1.0.0"; sha256="0jkhpb7q1kg8n2fjj7n3khzwdsz0kh9w7q2wd9xf5mn69066m3f1"; depends=[cli crayon crul jsonlite]; }; trend = derive2 { name="trend"; version="1.1.5"; sha256="12xswr925jjbkdccjiigkr6a44jmgvzwvnizciv6rr3mnklv6n66"; depends=[extraDistr]; }; trendchange = derive2 { name="trendchange"; version="1.2"; sha256="0hsh45mr6az9gj2g8mc0nswarc8hwdv5zldmfvnkmh57rznbqpb3"; depends=[]; }; - trendeval = derive2 { name="trendeval"; version="0.0.1"; sha256="1cpv7l26ia40s46wfi4jwhwzl0xxs0dgzv4ngg8frbv5l80fmvmr"; depends=[ellipsis rsample tibble tidyr trending yardstick]; }; + trendeval = derive2 { name="trendeval"; version="0.1.0"; sha256="0a9ipy88ay7170mmjissky57xgh0y9vk0kirygbsg9ihk0pk9dc5"; depends=[rsample tibble trending yardstick]; }; trending = derive2 { name="trending"; version="0.1.0"; sha256="15nx0s5q2nk2z9lvpkpjzpg6qz0j182zzrl9v7wp70lfbpaahh24"; depends=[ciTools MASS pillar tibble vctrs]; }; trendsegmentR = derive2 { name="trendsegmentR"; version="1.1.0"; sha256="1r582zmxcdmq3sg5wd4zc2p1fv8sgbys5nryvvslak7nj5h0i2yq"; depends=[]; }; trendyy = derive2 { name="trendyy"; version="0.1.1"; sha256="03n7qdfc197hds8bdwl20b0nn62nqnz9r35v1q315nm3ccdifl1p"; depends=[crayon dplyr gtrendsR magrittr purrr stringr tibble]; }; - triact = derive2 { name="triact"; version="0.2.0"; sha256="0aw0k3l342l93rm31kls9bc4g0w4rlavvww2awnc164wj96xd9zr"; depends=[checkmate data_table lubridate R6]; }; + triact = derive2 { name="triact"; version="0.3.0"; sha256="1ndxqrs1mg6ch99cksd7gnrjvhsklwfrjwrdxns099a3n16m3r0h"; depends=[checkmate data_table lubridate R6]; }; trialr = derive2 { name="trialr"; version="0.1.6"; sha256="1a93pncc0w84z8d2xlgia9jvxad63r3ifxjd4nc284s760i9k2v7"; depends=[BH binom coda dplyr ggplot2 gtools magrittr MASS purrr Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders stringr tibble tidybayes]; }; triangle = derive2 { name="triangle"; version="1.0"; sha256="0vl8rgasmxb64kkk4vph4b7jzmyq9c0lp5jfr9ybmd8czaz6947l"; depends=[assertthat]; }; triangulation = derive2 { name="triangulation"; version="0.5.0"; sha256="1zp09g0s0qpqgz2k6jx32pswh2zqyyd0b62lf1dx1p46m28dafkn"; depends=[]; }; triangulr = derive2 { name="triangulr"; version="1.2.1"; sha256="1fjibp1rhgj363z3gn2iia5iv1hahdabwpxd7q3lxqzxwzs4nfd5"; depends=[cpp11 rlang vctrs]; }; tribe = derive2 { name="tribe"; version="0.1.8"; sha256="01z1b9k3j4xi5fp9pkpr991yr7x8vk8vysipy7iwdmdr7xg4w4p0"; depends=[dplyr lazyeval magrittr rlang rstudioapi]; }; - tricolore = derive2 { name="tricolore"; version="1.2.2"; sha256="0pxahddc3dah4n4xk4i0dkiwvh4wf03gcx8q3nfrsk07zzap1zh1"; depends=[assertthat ggplot2 ggtern shiny]; }; triebeard = derive2 { name="triebeard"; version="0.4.1"; sha256="1xz0xwq9c986as6g7z2g1ycvw1ryh4g89ygldvakpr21cgpjybqr"; depends=[Rcpp]; }; trigpoints = derive2 { name="trigpoints"; version="1.0.0"; sha256="1hckjh2gb0fvd2c8x6mj0idpk3im7b831y7mbli1hqhry6qqdw15"; depends=[sf tibble]; }; trimcluster = derive2 { name="trimcluster"; version="0.1-5"; sha256="12siv8yx8dcavsz8jk96lwscbj257ar8jpaxksl2zb06987g4fcj"; depends=[]; }; @@ -18502,7 +18729,7 @@ in with self; { trimr = derive2 { name="trimr"; version="1.1.1"; sha256="12z194g67b8g4vv1667hzhmns9mhw93icvdkxf2d45wfyjfdvsvv"; depends=[dplyr]; }; trinROC = derive2 { name="trinROC"; version="0.6"; sha256="0jpnr3l8f057k334sx803cc7kxgi8mxvxjgli88f8682ax9z47k3"; depends=[ggplot2 gridExtra rgl]; }; trip = derive2 { name="trip"; version="1.8.7"; sha256="137vzrxpy3p5z2cpdm9qqyy3zxi8qnv55b16dqf0i3dm6n6z75zl"; depends=[crsmeta dplyr geodist glue MASS raster reproj rlang sp spatstat_explore spatstat_geom traipse viridis]; }; - tripEstimation = derive2 { name="tripEstimation"; version="0.0-44"; sha256="1ylpyzlqr6l5haxq4icnlxw6vgvc2lsfz5sm2wqqm4m6h3p0i6s6"; depends=[lattice mgcv rgdal sp zoo]; }; + tripEstimation = derive2 { name="tripEstimation"; version="0.0-46"; sha256="1zw8akawr0b63a6iz1p8rklk1jm304fwvvfanysghw8kc0jr16hn"; depends=[lattice mgcv reproj sp zoo]; }; tripack = derive2 { name="tripack"; version="1.3-9.1"; sha256="1ghza4by6shalsnqybn5qgv076dxh59b6vycg9v6ii216zbgi0kz"; depends=[]; }; triplot = derive2 { name="triplot"; version="1.3.0"; sha256="1apmdpxdnnmjyi7gcrjrqw44iqphr84nbgw0nfxcspzjgxhc81l1"; depends=[DALEX ggdendro ggplot2 glmnet patchwork]; }; tripsAndDipR = derive2 { name="tripsAndDipR"; version="0.1.0"; sha256="1gm96fxgql9y08w177nyxw0bahyafcs75maz743a9hfb0gjixvy2"; depends=[]; }; @@ -18531,7 +18758,7 @@ in with self; { tsSelect = derive2 { name="tsSelect"; version="0.1.8"; sha256="0ysijzhhwaj5n7h50jacshnla6d0h61q0f6lj19ic0lwvlz4yazy"; depends=[forecast]; }; tsallisqexp = derive2 { name="tsallisqexp"; version="0.9-4"; sha256="07ymkrik1vwblcj5i0crihbrrxkrn8xjkap3lrzxy4vidgqalw3f"; depends=[]; }; tsapp = derive2 { name="tsapp"; version="1.0.4"; sha256="1x3f10rdg3ihq5cx6w1zyz3irv1wsgx6admz5qv3zwwlk0z6cwpx"; depends=[fftwtools hdm Matrix vars]; }; - tsbox = derive2 { name="tsbox"; version="0.4"; sha256="08h49y43h0cfa20x1jj6ywm58w7anxxpxnf98i7q1q566pv97jp4"; depends=[anytime data_table]; }; + tsbox = derive2 { name="tsbox"; version="0.4.1"; sha256="1amv1rwa78phrgi5njq66kz42wkk0n1b6wzg232m4znq2jj2b6s7"; depends=[anytime data_table]; }; tscopula = derive2 { name="tscopula"; version="0.3.1"; sha256="0cbc90mzdl9rzf9p75whxqf5j2al5w8zacycs800kylkgv6cyanc"; depends=[arfima FKF kdensity ltsa Matrix rvinecopulib xts zoo]; }; tscount = derive2 { name="tscount"; version="1.4.3"; sha256="087ncxy1q91yc5rr15d5h6m7kaqhw8yy5fbm22rkzp9dg2fhbzi3"; depends=[ltsa]; }; tsdb = derive2 { name="tsdb"; version="1.1-0"; sha256="19gvswvx6f60zbpcdkgra6mvkzrl940vf6nn0nyap144qg3fkq27"; depends=[datetimeutils fastmatch zoo]; }; @@ -18540,7 +18767,7 @@ in with self; { tsdisagg2 = derive2 { name="tsdisagg2"; version="0.1.0"; sha256="1vjypf9d4rdprpgxfsgpccn412kvar59v341ridq2hcdp7hfb70s"; depends=[]; }; tsensembler = derive2 { name="tsensembler"; version="0.1.0"; sha256="0amb3dn96hdgy5a0j6s43mf82cdjwbz8dhz3yrjlr07nknxzirzi"; depends=[Cubist doParallel earth foreach gbm glmnet kernlab monmlp pls ranger RcppRoll softImpute xgboost xts zoo]; }; tsentiment = derive2 { name="tsentiment"; version="1.0.5"; sha256="1sa1xy1v7p166r3sc3mg66zzw72n8vsy8q636knhyl71zzbvacsw"; depends=[dplyr ggplot2 httr reshape2 stringi syuzhet tibble tidytext wordcloud]; }; - tseries = derive2 { name="tseries"; version="0.10-53"; sha256="0mnazjzi9pldzlzjwgrfk0s3f7ykjgbj5gzcpfz2nx92s3k8wf7c"; depends=[quadprog quantmod zoo]; }; + tseries = derive2 { name="tseries"; version="0.10-54"; sha256="0a6hnkx1wpw29q5rqq7hi2fal720dx5f62rvc6gxs8lanmik5jn3"; depends=[jsonlite quadprog quantmod zoo]; }; tseriesChaos = derive2 { name="tseriesChaos"; version="0.1-13.1"; sha256="0qfrrzd0h8n9zp7wj5fl88wkiv22fs5zy8x509g316j0avm5zjr3"; depends=[deSolve]; }; tseriesEntropy = derive2 { name="tseriesEntropy"; version="0.6-0"; sha256="04clfkpkiy5p5nxcq59c7f4v1llj1d95lvck23h1px50lvb993fv"; depends=[cubature ks]; }; tseriesTARMA = derive2 { name="tseriesTARMA"; version="0.3-2"; sha256="0clxwlamqhlsbi7ldwwwk24rr5miyzg71gsw31x10g6zj7hwvrvd"; depends=[lbfgsb3c mathjaxr Matrix Rdpack Rsolnp rugarch]; }; @@ -18584,17 +18811,17 @@ in with self; { tuckerR_mmgg = derive2 { name="tuckerR.mmgg"; version="1.5.1"; sha256="0lrylh0np0kbl4xx3gmlvid0g11fh0ad39wdwbz6hrmf5pzsjdjq"; depends=[]; }; tufte = derive2 { name="tufte"; version="0.12"; sha256="1srnrqjw2d0pzl1gpd11m9s8p43hhb0mxm3yd260rvhbsn1x0hs0"; depends=[htmltools knitr rmarkdown xfun]; }; tufterhandout = derive2 { name="tufterhandout"; version="1.2.1"; sha256="04fvvbx69a28nk7i4wz5ynamz1yvsa2ibz542r1xaq1ikk0ywqbw"; depends=[knitr rmarkdown]; }; - tukeyGH = derive2 { name="tukeyGH"; version="1.0.0"; sha256="1nlhv8lyjaqq95l7j85bdqdrsphagwf69iq8g3ryyyckchirljjg"; depends=[magrittr minqa Rdpack rootSolve]; }; tukeytrend = derive2 { name="tukeytrend"; version="0.7"; sha256="15j7g0drb92rpxq7d0jl9h0hxpi9pbgpvfcxaicrcgypxap3721q"; depends=[lme4 Matrix mgcv multcomp nlme pbkrtest]; }; tumgr = derive2 { name="tumgr"; version="0.0.4"; sha256="1ylfmrsg177g75l2scjpgw6v4dpz62r7cy89pql9zd5zqy167xqj"; depends=[minpack_lm]; }; - tune = derive2 { name="tune"; version="1.1.0"; sha256="1pp3pgxwpqihxfjwf9mb5rc0yv60q47n7z399z21zp4jbwryxymh"; depends=[cli dials dplyr foreach generics ggplot2 glue GPfit hardhat lifecycle parsnip purrr recipes rlang rsample tibble tidyr tidyselect vctrs withr workflows yardstick]; }; - tuneR = derive2 { name="tuneR"; version="1.4.3"; sha256="16rr1w2a3cyks0dp5crpcryig6rarn1azibvvy5hgsxgqaiwizm9"; depends=[signal]; }; + tune = derive2 { name="tune"; version="1.1.1"; sha256="0kl8bpd1i5ir6lrx055rilvb7kg0iws5f4618956h3g8sif1lvmg"; depends=[cli dials dplyr foreach generics ggplot2 glue GPfit hardhat lifecycle parsnip purrr recipes rlang rsample tibble tidyr tidyselect vctrs withr workflows yardstick]; }; + tuneR = derive2 { name="tuneR"; version="1.4.4"; sha256="1fzkji3yq4f7y2y0h3k47kcv3pj3lfy524lvra18f5y27pwvjkif"; depends=[signal]; }; tuneRanger = derive2 { name="tuneRanger"; version="0.5"; sha256="1xf78q8f7sq6w2jjwcw8vz88bmbp8yivydmqygjag58abnhd0356"; depends=[BBmisc DiceKriging lhs lubridate mlr mlrMBO ParamHelpers ranger smoof]; }; tuple = derive2 { name="tuple"; version="0.4-02"; sha256="0fm8fsdfiwknjpc20ivi5m5b19r9scdxhzij70l8qi3ixw1f0rnk"; depends=[]; }; turboEM = derive2 { name="turboEM"; version="2021.1"; sha256="17j308qla2680k0j8cf2c4v1jlsm21z93zglncmw3n0isa7cwjly"; depends=[doParallel foreach iterators numDeriv quantreg]; }; turner = derive2 { name="turner"; version="0.1.7"; sha256="1xckb750hbfmzhvabj0lzrsscib7g187b44ag831z58zvawwh772"; depends=[tester]; }; + tutorial_helpers = derive2 { name="tutorial.helpers"; version="0.2.5"; sha256="0nbfd44pzhq41k3r78gm5fqsgb5smm126i27mmpl57kas94wzbs6"; depends=[dplyr gridExtra learnr parsermd purrr readr rmarkdown rstudioapi shiny stringr tibble]; }; tvR = derive2 { name="tvR"; version="0.3.2"; sha256="1i20z09f714fyn3ipcn9i5g4dx7cyjfkyjqzyqzqapkg0m9ny91m"; depends=[Matrix Rcpp RcppArmadillo Rdpack]; }; - tvReg = derive2 { name="tvReg"; version="0.5.7"; sha256="0q34266qk621cna5sf87yyp2jf9s9zc945bm2qsl8mh2ag0wii86"; depends=[bvarsv MASS Matrix plm systemfit vars]; }; + tvReg = derive2 { name="tvReg"; version="0.5.8"; sha256="0ivabcp1hm0rmr55lrqgsgbg23mkzdg6h11k95m2yg5pm853zbh8"; depends=[bvarsv MASS Matrix plm systemfit vars]; }; tvem = derive2 { name="tvem"; version="1.3.1"; sha256="1hrjl5kbp0wx7a4aa8bbvf5sdrxcvxsf3318ckgl85w923i8a44k"; depends=[mgcv]; }; tvgarch = derive2 { name="tvgarch"; version="2.4"; sha256="1k6i6xfwjyhbj7mga46kzx2fwf7lx2jkax59qvc19v46y4rhidlb"; depends=[garchx numDeriv zoo]; }; tvgeom = derive2 { name="tvgeom"; version="1.0.1"; sha256="1lr2vqgj5jfhzavwd43wcchhbicmf4dqjvyf66rvnjkw3jaig8dm"; depends=[]; }; @@ -18632,7 +18859,7 @@ in with self; { typehint = derive2 { name="typehint"; version="0.1.2"; sha256="1n37qgphzf7lckrgfc8w3fq82zrjcvadx034qx8hrmbh4dynsl2s"; depends=[crayon rlist stringr]; }; types = derive2 { name="types"; version="1.0.0"; sha256="01shcin8wjbhbmzl979fj3008xqxssw90g3bjg42cnjxkmnaql59"; depends=[]; }; typetracer = derive2 { name="typetracer"; version="0.1.1"; sha256="17ki98ckyjzz4gqv5hsm9zgn2xljn1vih1gdh57880q6yfmwj2lj"; depends=[brio checkmate tibble withr]; }; - tzdb = derive2 { name="tzdb"; version="0.3.0"; sha256="0f3h4zaf9f4l371k6nc1mq6z2f9aj1vaf2inni8jnsds3zng16b0"; depends=[cpp11]; }; + tzdb = derive2 { name="tzdb"; version="0.4.0"; sha256="08rskp7kv2w5pfnrxzswgkdsrg1g0pq3n64q7i3gvpdx85hccls2"; depends=[cpp11]; }; tzupdater = derive2 { name="tzupdater"; version="0.1.2"; sha256="0s1simvn76m569iq24qb3w6xli0202cjf1jr3a4qy58fs4sda2kv"; depends=[]; }; u5mr = derive2 { name="u5mr"; version="0.1.1"; sha256="16znlmxanhg1m6fq28z62jv033fxgr4njzz50hgskprvgvx8svkj"; depends=[lifecycle]; }; uCAREChemSuiteCLI = derive2 { name="uCAREChemSuiteCLI"; version="0.2.0"; sha256="1nccgkxv57inhgvgmhwm4fr8cp28sj8n83za5gam9xx1f42mzsqk"; depends=[ChemmineR usethis]; }; @@ -18641,15 +18868,15 @@ in with self; { uaparserjs = derive2 { name="uaparserjs"; version="0.3.5"; sha256="0v24smgsz1p2wa23mc2llx7dycwmgf7zyxdhwxgwplabpmy3xzhl"; depends=[progress V8]; }; uavRmp = derive2 { name="uavRmp"; version="0.6.2"; sha256="0jv0ls8wbxciv6lhr7qvzarg4s3gckkc1n4w833sfpr0sk4gakaj"; depends=[brew data_table exifr geosphere jsonlite link2GI log4r rlist sf sp zoo]; }; ubiquity = derive2 { name="ubiquity"; version="2.0.0"; sha256="1zjjwpl8zkpr4zvrhsbsj6vpiwy08vs2sw1rpx7aq940v37dvmbz"; depends=[deSolve digest doParallel dplyr flextable foreach ggplot2 knitr magrittr MASS onbrand optimx PKNCA pso readxl rhandsontable rmarkdown scales shiny stringr]; }; - ubms = derive2 { name="ubms"; version="1.2.2"; sha256="0d83i27cc4wlw5pivmkf5msvxyj99yr0fb5fibxa3knfz8hwwaxw"; depends=[BH ggplot2 gridExtra lme4 loo Matrix pbapply Rcpp RcppArmadillo RcppEigen RcppParallel RSpectra rstan rstantools StanHeaders unmarked]; }; + ubms = derive2 { name="ubms"; version="1.2.4"; sha256="10kya1im8czcrqaqq27iylf14v5qcq8nrsb3w0imafak4b8ikz4k"; depends=[BH ggplot2 gridExtra lme4 loo Matrix pbapply Rcpp RcppArmadillo RcppEigen RcppParallel rlang RSpectra rstan rstantools StanHeaders unmarked]; }; uchardet = derive2 { name="uchardet"; version="1.1.1"; sha256="0m3xy807smqdxhkhd9cwrcf3ljlyvfmnkd7831qzpgcadam2jcdj"; depends=[]; }; ucie = derive2 { name="ucie"; version="1.0.2"; sha256="032anlli29a0iwzmn35afrcs4if5kipplpn8n4qpy1g14hc5zgvd"; depends=[colorspace dplyr geometry pracma ptinpoly remotes rgl]; }; uclust = derive2 { name="uclust"; version="1.0.0"; sha256="10i78fc81sy635mi8nn1gmryvcbqq7f99ws6byqlnhwyw79qmvb1"; depends=[dendextend robcor]; }; - ucminf = derive2 { name="ucminf"; version="1.1-4.1"; sha256="1cknk42allcflgk16i4gwi4a389idrxqz6y2w8i7s9mdfgrvd981"; depends=[]; }; + ucminf = derive2 { name="ucminf"; version="1.2.0"; sha256="1x3d3l500kyqamzfjpz4qc38d6d3sha9av3rpxz0m4dhms28zpas"; depends=[]; }; udpipe = derive2 { name="udpipe"; version="0.8.11"; sha256="0crjcfrpb0m7f58w7ksz7kvglvmc45axy9kbbvqz9w6i4kg00aaj"; depends=[data_table Matrix Rcpp]; }; udunits2 = derive2 { name="udunits2"; version="0.13.2.1"; sha256="00prsy8m41v1camcsz94d7gm8qab2mdnwl3x0dyhz4r49b02jm4z"; depends=[]; }; ufRisk = derive2 { name="ufRisk"; version="1.0.6"; sha256="190rjqhmm7r9yy4f5gyk2p8k250xnnkkssi3nfgv79w62z2hv2qh"; depends=[esemifar fracdiff rugarch smoots]; }; - ufs = derive2 { name="ufs"; version="0.5.2"; sha256="1lqnib0pizx97isqbr4v2r4qp7fph6znbd5arbjnxmlh2wblfbsl"; depends=[digest diptest dplyr ggplot2 ggrepel ggridges gridExtra gtable htmltools kableExtra knitr pander plyr pwr rmdpartials scales SuppDists]; }; + ufs = derive2 { name="ufs"; version="0.5.6"; sha256="0w8fh92v6xiabyah56j68amn48gaa8ia0lk09273jlqc2q9fda62"; depends=[digest diptest dplyr ggplot2 ggrepel ggridges GPArotation gridExtra gtable htmltools kableExtra knitr pander plyr pwr rmdpartials scales SuppDists]; }; ugatsdb = derive2 { name="ugatsdb"; version="0.2.3"; sha256="098dzh6slaxj22730nm9g6b5653600ms2ahxr87iblh5xq0dcidl"; depends=[collapse data_table DBI RMySQL writexl]; }; ugomquantreg = derive2 { name="ugomquantreg"; version="1.0.0"; sha256="1a5vc1qgy3kp1by5bp296w980lkxcghzzxibhap2jg06jnzjfcq8"; depends=[gamlss gamlss_dist pracma Rcpp]; }; ui = derive2 { name="ui"; version="0.1.1"; sha256="15hcdzaj75ip6j7yglx8rqhp4y3yf3aw5cpbjgk1mjr4cya7lvzi"; depends=[Matrix maxLik mvtnorm numDeriv]; }; @@ -18681,7 +18908,7 @@ in with self; { unifDAG = derive2 { name="unifDAG"; version="1.0.3"; sha256="052qjrnj04imhj6i62k8jdx9rs8r70n0qrmd2z45x4fimn5py6j5"; depends=[gmp graph]; }; unifed = derive2 { name="unifed"; version="1.1.6"; sha256="0wy2hasgkzw08l50qq30wb62i1q4skc3zccipv8pm911qlldk3sr"; depends=[]; }; unifir = derive2 { name="unifir"; version="0.2.3"; sha256="1l563qxym1srjj5xzcz8jks3577jpk33k1gb95lcyg7r9bh35j85"; depends=[glue proceduralnames R6]; }; - uniformly = derive2 { name="uniformly"; version="0.2.0"; sha256="1xfwnklzmz72kp5qsb5zh3p6lwngpiaw5b4drjd41h9xvxdb3dyd"; depends=[pgnorm]; }; + uniformly = derive2 { name="uniformly"; version="0.3.0"; sha256="1vb1dg2qjnv7vr4nbnmif5xjzh2yv6mjm5l8227r7bvijgfd8hhd"; depends=[pgnorm]; }; unikn = derive2 { name="unikn"; version="0.8.0"; sha256="03v23j65pxbl3ddvaj71v2fc90kzv7pysa2xrmyfaxalrwc495bp"; depends=[cli ggplot2]; }; unine = derive2 { name="unine"; version="0.2.0"; sha256="051dk8fss19h4d9815a7994krr1s3n5q0pxq9gir6zns0vvn05pw"; depends=[Rcpp]; }; uniqtag = derive2 { name="uniqtag"; version="1.0.1"; sha256="0vmd5w4p2qvpg6djddl92q9d3c6kiq0rjv6hq6j7x1b1zwqhgfi5"; depends=[]; }; @@ -18690,8 +18917,8 @@ in with self; { unitedR = derive2 { name="unitedR"; version="0.4"; sha256="0h4i814awb8419693jz3x5cyhs2x6y5flmz339bg6ivmg13d9h3s"; depends=[plyr]; }; unitizer = derive2 { name="unitizer"; version="1.4.19"; sha256="1dx9wlx27mwqkr3vmxdgvyjp7k8pbq718r8x1ri3akxigp4rbjcx"; depends=[crayon diffobj]; }; unitquantreg = derive2 { name="unitquantreg"; version="0.0.5"; sha256="1sb9gh0sdhs2bmybqkbnr82ymfiq1317iiihbgj56xxa4rwx13mg"; depends=[Formula MASS numDeriv optimx quantreg Rcpp]; }; - units = derive2 { name="units"; version="0.8-1"; sha256="16ndhl4hkcll9r5vh8flp2bc3mavddfz8g6sqddj15scdcjbmqfk"; depends=[Rcpp]; }; - unittest = derive2 { name="unittest"; version="1.5-3"; sha256="0lpihlga16qklha3i8j4yx9dkmvmsqp8iai0arza97cx63971xwx"; depends=[]; }; + units = derive2 { name="units"; version="0.8-2"; sha256="0kskk6p1c2zrwkacrl8pwdvvbrlf9xpjsmdpvsb7jvg551hl4i0l"; depends=[Rcpp]; }; + unittest = derive2 { name="unittest"; version="1.6-0"; sha256="10k1lx4pzl884m00mx191h5hxcgcsiz9486dbyjvsyhh0hv2xi0v"; depends=[]; }; univOutl = derive2 { name="univOutl"; version="0.4"; sha256="1kp014bhs8v02fp7misrj4fpfp2na9lg45p5zqvlfaypnm5imsr9"; depends=[Hmisc robustbase]; }; unival = derive2 { name="unival"; version="1.1.0"; sha256="0j7fl77my2273k72s8k9v5pcb85swxfipjxmk4vw487i7aq8b1nq"; depends=[psych]; }; univariateML = derive2 { name="univariateML"; version="1.1.1"; sha256="0a4h19hmw0k2x5yqs92xp48r2srycv4sax97p7gci8hahjw8qzdf"; depends=[actuar assertthat extraDistr fGarch logitnorm nakagami tibble]; }; @@ -18744,7 +18971,7 @@ in with self; { usmap = derive2 { name="usmap"; version="0.6.1"; sha256="1q27xxvfrwin61jxba2k91brgcam7hqq5yv5hha4f8s7h3rqam6b"; depends=[rlang usmapdata]; }; usmapdata = derive2 { name="usmapdata"; version="0.1.0"; sha256="13a4bj6ixqzfwm60r2c3i9zy96mr2hk77n720zs5i0i16acfnxav"; depends=[]; }; ussherR = derive2 { name="ussherR"; version="1.10"; sha256="0awhric6xrhgv4wb9saq7jyikd3h74i6vlq3aqip4i1m9j3ym3k1"; depends=[]; }; - ustfd = derive2 { name="ustfd"; version="0.2.0"; sha256="1q2i1jlvgdyvx55r3h3f0g6zqyv197yyfkkiaixy4kzdzp9rxy9d"; depends=[dplyr httr lubridate purrr readr rlang tibble]; }; + ustfd = derive2 { name="ustfd"; version="0.4.0"; sha256="0xc0xhrny5gf0j9pp3yd46b46pkas5gwyjs0d3j94bp17ms8mi1z"; depends=[dplyr glue httr lubridate purrr readr rlang snakecase stringr tibble]; }; ustyc = derive2 { name="ustyc"; version="1.0.0"; sha256="1267bng2dz3229cbbq47w22i2yq2ydpw26ngqa1nbi3ma6hwqsv4"; depends=[plyr XML]; }; utc = derive2 { name="utc"; version="0.1.5"; sha256="1lhm5rhr78cxp3cz5n6j2zkhjphj7csk026xvvhkjqdi39rrq6i4"; depends=[]; }; utf8 = derive2 { name="utf8"; version="1.2.3"; sha256="0iv3ppy7sddzl4sm3qlghpc64k6zx5j0jzcia8xx8jhzb638da60"; depends=[]; }; @@ -18762,7 +18989,7 @@ in with self; { uwo4419 = derive2 { name="uwo4419"; version="0.3.0"; sha256="0hk5qhyarjxz7ngj5ak37vx0rak6xv0hfb4sdrsbci3kv5fqijv7"; depends=[DescTools dplyr ggplot2 gmodels haven magrittr psych RColorBrewer rio tibble tidyr]; }; uwot = derive2 { name="uwot"; version="0.1.14"; sha256="1q4z98w3pkc51vrcpmwaibnwmlm17zjcnh0qlx660wky5ccyh5l0"; depends=[dqrng FNN irlba Matrix Rcpp RcppAnnoy RcppProgress]; }; uxr = derive2 { name="uxr"; version="0.2.0"; sha256="0zq89xjbmbc4pmzb3w8frnrqafpxbj2s8lhgj7kvmf6k0yqvpyd3"; depends=[cli dplyr huxtable magrittr purrr rlang scales stringr tibble tidyr]; }; - vDiveR = derive2 { name="vDiveR"; version="1.0.0"; sha256="1l2cx3lkr666m2dbxgkjryspyqjqnn6l9q5jhdkcrkd3d87iy9kh"; depends=[dplyr gghalves ggplot2 ggpubr ggtext gridExtra magrittr plyr rlang stringr tidyr]; }; + vDiveR = derive2 { name="vDiveR"; version="1.1.0"; sha256="19rdvpyvmvlmqkxalfgbxrkz6y48w779r42icraa348ph1dc1n7f"; depends=[dplyr gghalves ggplot2 ggpubr ggtext gridExtra magrittr maps plyr readr rentrez rlang scales stringr tidyr]; }; vICC = derive2 { name="vICC"; version="1.0.0"; sha256="13lcs7wwj1xfbjf3q7r8ssf00jg5hr1vjp2pyw0r42iz7mx47xjv"; depends=[coda ggplot2 nlme Rdpack rjags]; }; vMF = derive2 { name="vMF"; version="0.0.1"; sha256="1sygiqyzqikrpdiav0117hnv6zynq1d415v73ygjfj4c1v5l05h0"; depends=[BH Rcpp RcppArmadillo]; }; vaRiskScore = derive2 { name="vaRiskScore"; version="1.0.0"; sha256="1nqm7c0wamr0alp610jdllnzr83bi5cjx1vllza5y458zlcpwnnk"; depends=[]; }; @@ -18779,12 +19006,13 @@ in with self; { validann = derive2 { name="validann"; version="1.2.1"; sha256="00c0hkjiv8n7mksx6sknb4xkkivxr1ml31k697csv4imwrk09dy5"; depends=[moments]; }; validata = derive2 { name="validata"; version="0.1.0"; sha256="01ghnkkhqgjllpwdvphcqymps7jq3wd919rplk092iiwwq1mpb9m"; depends=[badger BBmisc data_table dplyr framecleaner gtools janitor listviewer magrittr purrr rlang rlist scales stringr tibble tidyr tidyselect]; }; validate = derive2 { name="validate"; version="1.1.3"; sha256="020l46qd4fyqr7hksgvsvzlh2ibppwgpfasv8a0schl4vjf29a7j"; depends=[settings yaml]; }; + validateIt = derive2 { name="validateIt"; version="1.2.1"; sha256="16lcbn853rfnyh8hlvjdxh4abx6wkzsn876fh4mlfkpbcrnmp0ps"; depends=[here pyMTurkR rlang SnowballC tm]; }; validateRS = derive2 { name="validateRS"; version="1.0.0"; sha256="1ivw9ddr6z2wrsqvhbn87p5pikhkxlz8p45pb5nq13dvs359vkww"; depends=[data_table reshape2 triangle truncnorm]; }; validatetools = derive2 { name="validatetools"; version="0.5.0"; sha256="10wardp2c70zx5ii940sjql3xh5p3vqxv4ayyifhhlr8vzvr5cj0"; depends=[lpSolveAPI validate]; }; valmetrics = derive2 { name="valmetrics"; version="1.0.0"; sha256="1fdaljdfvfmqarxdyjs9pcd8ji2z9i379vcxf65jvnhiaqlsms57"; depends=[]; }; valorate = derive2 { name="valorate"; version="1.0-1"; sha256="06vczszpkipsxfs7h6ld33vvxb5ci62rwg3cglwy3lcfifhbnsfi"; depends=[survival]; }; valottery = derive2 { name="valottery"; version="0.0.1"; sha256="0rlv8agm9ng4jcb9ixqifh7kjczvkx7047brq8yf9kg7rb8mzgpz"; depends=[]; }; - valr = derive2 { name="valr"; version="0.6.7"; sha256="1s8bjbban2a3cqhwgykmhkv5b748nscamfbv67v4cppjbdvlhb5s"; depends=[broom cli dplyr ggplot2 Rcpp readr rlang rtracklayer stringr tibble]; }; + valr = derive2 { name="valr"; version="0.6.8"; sha256="156sqh474synjvdm1j332ab75rqab0n81d674xbgs3rfxlr2ksgz"; depends=[broom cli dplyr ggplot2 Rcpp readr rlang rtracklayer stringr tibble]; }; valse = derive2 { name="valse"; version="0.1-0"; sha256="0l3fdsgrmalifcxscjsxsfq07v8vipg0rdw6xh94q7xw5gdfsms0"; depends=[cowplot ggplot2 MASS reshape2]; }; valueEQ5D = derive2 { name="valueEQ5D"; version="0.7.2"; sha256="1w1l07s1rfxc1ba6kdq0l1vmb2qib6gmdm91706cmy1azfa92n4d"; depends=[testthat]; }; valuemap = derive2 { name="valuemap"; version="2.0.4"; sha256="1mmk60njwbylgp3nn5lkbkvyw6xkq4gg9k18smjlr47ys6bn6k4p"; depends=[devtools dplyr h3jsr htmltools leaflet sf]; }; @@ -18792,14 +19020,14 @@ in with self; { vampyr = derive2 { name="vampyr"; version="1.1.1"; sha256="137sdv4shmjg1cpndjknrys2jkvyq3p9l11nrdh0bzp9xxc1wkh1"; depends=[corpcor EFA_MRFA fungible GPArotation lavaan moments PCovR psych semPlot]; }; vandalico = derive2 { name="vandalico"; version="0.0.1"; sha256="0ipx9yq5wgpwphy1wzpa8jh605k3b5nkhplj4k0bym107010s3qd"; depends=[ROCR]; }; vangogh = derive2 { name="vangogh"; version="0.1.1"; sha256="1ny4dgwkk54pgwgg3lwcv8vcdnizlajdck68ihpzh2s1yz4n38bm"; depends=[ggplot2]; }; - vannstats = derive2 { name="vannstats"; version="1.3.1.30"; sha256="08lcw2ypsahxw2kj0kckf67nrz2dp0jcbny24y2n7qwhz5si2r5w"; depends=[dplyr formula_tools gdata ggplot2 ggrepel gplots plm purrr rlang rstatix stringr]; }; + vannstats = derive2 { name="vannstats"; version="1.3.4.14"; sha256="0fzs2w2rqmdl4a595xi34l7b0sw68yik3yv4mxzqfznwsxiaj8m4"; depends=[dplyr formula_tools gdata ggplot2 ggpubr ggrepel gplots plm purrr rlang rstatix stringr]; }; vanquish = derive2 { name="vanquish"; version="1.0.0"; sha256="01di1j36npl7vnyhgsagvyf6j8bxcw867dwf9dgi7l1328s7lf0l"; depends=[changepoint e1071 ggplot2 VGAM]; }; - vapour = derive2 { name="vapour"; version="0.9.3"; sha256="0yj2p7mc9n6ii9cn2a79gdnx68l60m3a79gkflj04ibsn9xsz6sb"; depends=[jsonlite Rcpp]; }; + vapour = derive2 { name="vapour"; version="0.9.5"; sha256="0m4mqx3chd7w98ky6man0ynvh7i310bw0bk5gg1cs4gm2myzs20p"; depends=[jsonlite nanoarrow Rcpp]; }; varEst = derive2 { name="varEst"; version="0.1.0"; sha256="0i6nsxl5w4zipzrmdvx8plmxr33n405w2qhks3s7zzs3kcys32v6"; depends=[caret glmnet lm_beta SAM]; }; varImp = derive2 { name="varImp"; version="0.4"; sha256="1bxlfqxi8iiv6raawl9668yhlmbak96ahd0ljzwrilnciqbclc2b"; depends=[measures party]; }; varSel = derive2 { name="varSel"; version="0.2"; sha256="05dk2s4lzd4sxrwsfs2yqsj08qrdrfwx1fs07nb9a8sd0in6vlpj"; depends=[]; }; varSelRF = derive2 { name="varSelRF"; version="0.7-8"; sha256="0h49rl1j13yfh97rsfsyh9s2c4wajny4rzms2qw77d0cavxqg53i"; depends=[randomForest]; }; - varTestnlme = derive2 { name="varTestnlme"; version="1.3.1"; sha256="0ql278pbifxkkz560yd9swlky322yb4bwyb043x9kf86fhf6njvj"; depends=[alabama anocva corpcor doParallel foreach lme4 Matrix merDeriv msm mvtnorm nlme nlmeU purrr quadprog saemix]; }; + varTestnlme = derive2 { name="varTestnlme"; version="1.3.4"; sha256="0rj6zh9cga6h1562jw71iqrczzdrrl9rlmfglj55rjyl03sqr4n4"; depends=[alabama anocva corpcor doParallel foreach lme4 lmeresampler Matrix merDeriv msm mvtnorm nlme quadprog saemix]; }; varband = derive2 { name="varband"; version="0.9.0"; sha256="16z66rx7xq5zan8pnw100c9r5syw1ml4hgzi9mch52aia23v21p9"; depends=[Rcpp RcppArmadillo]; }; varbin = derive2 { name="varbin"; version="0.2.1"; sha256="0gcynwc0vx7qlp3z0pcc4i7mjlnxkwy8ydxz2wr244fw32qgp4kq"; depends=[rpart]; }; varbvs = derive2 { name="varbvs"; version="2.6-8"; sha256="1bn7i1dz6gbmvv6k178l233gnixay32r5n6k2z20lqi2i096a5qa"; depends=[lattice latticeExtra Matrix nor1mix Rcpp]; }; @@ -18820,22 +19048,22 @@ in with self; { varycoef = derive2 { name="varycoef"; version="0.3.4"; sha256="1dfych3qhqq4qadizxjgh4lswnm47m2g59gv14c8j349ji94i8qh"; depends=[glmnet lhs mlr mlrMBO optimParallel ParamHelpers pbapply smoof spam]; }; vasicek = derive2 { name="vasicek"; version="0.0.3"; sha256="04g5dfn8zlm8n8sxmdq9xgkf0qbvvznqx27nyan268s5wlnnabd6"; depends=[mvtnorm]; }; vasicekreg = derive2 { name="vasicekreg"; version="1.0.1"; sha256="0hlac3p6mm7x88wdlqc93byx1s2a287kvhwzhz01pz4anap30683"; depends=[gamlss gamlss_dist mvtnorm Rcpp]; }; + vatcheckapi = derive2 { name="vatcheckapi"; version="0.1.0"; sha256="1jmfd6qksvw1dnlp4dyb33mr7y9phq9yw0k9qjla0z1jqc0gsnps"; depends=[httr jsonlite]; }; vaultr = derive2 { name="vaultr"; version="1.1.1"; sha256="1ahn79ixwmnglib3cllha941pvhg1jgk89qcxq4gi7ip8zj0v7sj"; depends=[getPass httr jsonlite R6]; }; vccp = derive2 { name="vccp"; version="0.1.1"; sha256="1c0mk46c74kj5y9rfniywbxxmwb2z16szzpq6b2sw8q0qi1cf5ji"; depends=[mosum mvtnorm VineCopula]; }; vcd = derive2 { name="vcd"; version="1.4-11"; sha256="0ch9ks25ab4h4fh4y267s0psvc4ndyaplk8ddva2j54yd1ayhm3s"; depends=[colorspace lmtest MASS]; }; - vcdExtra = derive2 { name="vcdExtra"; version="0.8-3"; sha256="0yyscm92wx0qnkpc1hdwd8xgfcxjgqhhm5r96gybf9iww5x91svr"; depends=[ca dplyr glue gnm here MASS purrr readxl stringr tidyr vcd]; }; + vcdExtra = derive2 { name="vcdExtra"; version="0.8-4"; sha256="0xvhnjd131jmhviknchhj5fz5np1g44csyzf0hf5617chf1v2kzb"; depends=[ca dplyr glue gnm here MASS purrr readxl stringr tidyr vcd]; }; vcfR = derive2 { name="vcfR"; version="1.14.0"; sha256="1jq4c8w9lq03q8x448p620wphslbw4zymfxc42ydl1x7wp9dnxl5"; depends=[ape dplyr magrittr memuse pinfsc50 Rcpp stringr tibble vegan viridisLite]; }; vcmeta = derive2 { name="vcmeta"; version="1.1.0"; sha256="02zfrdrl5ilaa7is1j8189p4f7n8zdy2jyzzh864zm1a4dkii2rk"; depends=[ggplot2 mathjaxr Rdpack]; }; vcov = derive2 { name="vcov"; version="0.0.1"; sha256="1w89mr8dk6436bxap28rszajgm9k7sjfqsr1i4p68dlhw8zk4yq1"; depends=[]; }; vcpen = derive2 { name="vcpen"; version="1.9"; sha256="0gg5ln9r7i8rh91pf7789fic4aah22jc259qyg606bax2w57qmi5"; depends=[knitr Rcpp RcppArmadillo]; }; vcr = derive2 { name="vcr"; version="1.2.0"; sha256="12xiw53dba7dcsdfb8c2cg4v6i9jzhf42plw6hwfp9v65bmq3b83"; depends=[base64enc crul httr R6 rprojroot urltools webmockr yaml]; }; - vctrs = derive2 { name="vctrs"; version="0.6.1"; sha256="10qjirgdq0bn2s84vqx5c78i85mdp5mxwdfn30kayh3wpmij8mbp"; depends=[cli glue lifecycle rlang]; }; + vctrs = derive2 { name="vctrs"; version="0.6.2"; sha256="117fh63r96i811y8dbrawmphlzqq8acaavykfx1y0mbc3zhspv7y"; depends=[cli glue lifecycle rlang]; }; vctsfr = derive2 { name="vctsfr"; version="0.1.0"; sha256="0g436m3dkyli06asjr4kdbhdx7mq0pcclmfpvblb5bsqrh5944i1"; depends=[ggplot2 shiny]; }; vcvComp = derive2 { name="vcvComp"; version="1.0.2"; sha256="0mip0v8gv358aadc3b4913dcz27kscx3dv15nwns20pan5jvyhv2"; depends=[]; }; vdar = derive2 { name="vdar"; version="0.1.3-2"; sha256="061ahwf8gyjqs5j9mkqnpn7899mivn4qbygnnzihmv065xj5vpd9"; depends=[compositions]; }; vdg = derive2 { name="vdg"; version="1.2.2"; sha256="0fdqmvzw6dd18w653kfvnw16489jpsyl1395xffhm8rz1dqkrhj1"; depends=[ggplot2 gridExtra proxy quantreg]; }; vdiffr = derive2 { name="vdiffr"; version="1.0.5"; sha256="1w6hqjb57q6ys9d6d4sh8v2s9hkgg1mkpil8lj1nld5pzir7pgqc"; depends=[cpp11 diffobj glue htmltools lifecycle rlang testthat xml2]; }; - vdra = derive2 { name="vdra"; version="1.0.0"; sha256="1ldl3wm55a5ywc5398lzky6l6x5a9djxwrqnrd570fg4iq6d30l1"; depends=[]; }; vec2dtransf = derive2 { name="vec2dtransf"; version="1.1.2"; sha256="1diwj005b0mzcik2v7phdbn792qy907cna3mzwr4sj21igjrhkmx"; depends=[sp]; }; veccompare = derive2 { name="veccompare"; version="0.1.0"; sha256="03nyyxvhhwfxxg5w6qflk7q234ipbhj9fd4abcp50sxz3diabch1"; depends=[corrplot gtools pander purrr qgraph reshape2 VennDiagram]; }; vecsets = derive2 { name="vecsets"; version="1.3"; sha256="1pc68v0vrn1fxh7x8cb45m0xfb0228naz4i1cnizbvll6almh5hr"; depends=[pracma]; }; @@ -18848,7 +19076,7 @@ in with self; { vegdata = derive2 { name="vegdata"; version="0.9.11.4"; sha256="14vmxxpnq3kasciqzxipl21kdlqv7m3dmcr4v8wlm6q2l9cnpzdy"; depends=[curl DBI dbplyr dplyr foreign hoardr httr indicspecies magrittr plyr RCurl RSQLite stringr xml2]; }; vegperiod = derive2 { name="vegperiod"; version="0.4.0"; sha256="0m10m85cf0qk2q2ln1qziqicv79rbjqqi9py18r412j7m43pn013"; depends=[]; }; vegtable = derive2 { name="vegtable"; version="0.1.8"; sha256="0q854isd0bm53xxj45h64cxnvkck0hm43vrxizyxxgqwqf0syg3z"; depends=[foreign qdapRegex sp stringi taxlist vegdata]; }; - vein = derive2 { name="vein"; version="1.0.0"; sha256="0x4b47k641cs041qjm36hxglb1vwvi7in3lcmp9nmf058zcrc5cf"; depends=[cptcity data_table dotCall64 fields sf units]; }; + vein = derive2 { name="vein"; version="1.0.2"; sha256="0g0j9whhli4hhv4minciyj0dpnms85lzy6parlppjb2wfsxyp2aa"; depends=[cptcity data_table dotCall64 sf units]; }; velociraptr = derive2 { name="velociraptr"; version="1.1.0"; sha256="0a67vmv05cxc9f27aqzr6nkgy2mj3fhykwj5nb23qwfqa669a5hi"; depends=[sf]; }; vembedr = derive2 { name="vembedr"; version="0.1.5"; sha256="1hmwgrp9vj7qwmsvnvgry8h707kj53wp5chpxqsbgxi9jryabpc0"; depends=[assertthat glue htmltools httr lifecycle magrittr stringr]; }; venn = derive2 { name="venn"; version="1.11"; sha256="054ky4sh47p5fw271ag79p84vdxm5bqa6gw0dvkz2y00r73ibn9k"; depends=[admisc]; }; @@ -18863,7 +19091,7 @@ in with self; { versions = derive2 { name="versions"; version="0.3"; sha256="0zm49j785dgv7fyr1yl9q5f0dsk8hhpim5q5bpkgrkzv7pwjribd"; depends=[]; }; versionsort = derive2 { name="versionsort"; version="1.1.0"; sha256="00r0h2iqlfq0nidqbhx4fv29rlppfx43jv2n2zp38lpx5vbqjhnj"; depends=[]; }; vesselr = derive2 { name="vesselr"; version="0.2.1"; sha256="1wzprnpiv04gxhqgki36gp1a0xj9l3mchllphwkfsdja4axq3prk"; depends=[oro_nifti pbapply pbmcapply]; }; - vetiver = derive2 { name="vetiver"; version="0.2.0"; sha256="1lyaq63wz4rdn2hi9rk7hl9wmq7jc0px7k8zj3gwvc1lmpcidkws"; depends=[bundle butcher cli fs generics glue hardhat lifecycle magrittr pins purrr rapidoc readr rlang tibble vctrs withr]; }; + vetiver = derive2 { name="vetiver"; version="0.2.1"; sha256="0pw6y7rs1hk9pc00f3bz1zrfk7pg4ygha7yp9mhs5jm7bkvpiqsl"; depends=[bundle butcher cli ellipsis fs generics glue hardhat lifecycle magrittr pins purrr rapidoc readr rlang tibble vctrs withr]; }; vetr = derive2 { name="vetr"; version="0.2.15"; sha256="0858wivgdbjs4qww6szi32ifc4l0a3nx0c0zf2778d4nxs9zgxk2"; depends=[]; }; vfcp = derive2 { name="vfcp"; version="1.4.0"; sha256="0zj1ihqdx5x1695al1xyi8k001yw8x7gdss72myxlnh7b4flnp9m"; depends=[copula extraDistr stringr]; }; vfinputs = derive2 { name="vfinputs"; version="0.1.0"; sha256="10fh6ybsqy9xm7gwl0kska0pgk810sgq9kvf86gmnm0pmrcqzsdh"; depends=[htmltools jsonlite scales shiny]; }; @@ -18871,14 +19099,14 @@ in with self; { vglmer = derive2 { name="vglmer"; version="1.0.3"; sha256="0wfl1n6xp6qiv34d4p5qy3mwzrvf3n324hrlksdpa68j5xfw9w0f"; depends=[CholWishart lme4 lmtest Matrix mgcv mvtnorm Rcpp RcppEigen]; }; vhcub = derive2 { name="vhcub"; version="1.0.0"; sha256="04a8hdm4pxl8fzwy9q2wqc9q0dl5r49xwbid70yj9qlflh683id0"; depends=[Biostrings coRdon ggplot2 seqinr stringr]; }; vhica = derive2 { name="vhica"; version="0.2.8"; sha256="10785bx2wcnrfg77914r93fzlixhjpqz22sj3gfrh5n4qswzs91g"; depends=[]; }; - via = derive2 { name="via"; version="0.1.0"; sha256="0vb4hxfi4im3f4zvkl0zcak8mk49g9ypmga704klfwyx44aywml6"; depends=[]; }; + via = derive2 { name="via"; version="0.2.0"; sha256="0mk6zrirf38a6qym15w9w76gw813mc7p265mcach90asrzfglb6q"; depends=[]; }; viafr = derive2 { name="viafr"; version="0.3.0"; sha256="1cxmk82cr2ci99j7wgfp7slqwyk5rxv109mk2c09mxqn3pdavil9"; depends=[assertthat crul dplyr jsonlite magrittr purrr rlang stringr tibble tidyr utf8]; }; - vici = derive2 { name="vici"; version="0.6.0"; sha256="1adkn98g12dyq1z09mlzmyljgq9bj2cpfm506navjiasj0a6q3fi"; depends=[cowplot DT ggplot2 ggpubr nlme numDeriv shiny stringr tidyr]; }; + vici = derive2 { name="vici"; version="0.7.0"; sha256="0fwqp5avnsyi07b9zw26qw30vkya28mlc3v1anhf6zq7hc7mgp54"; depends=[cowplot DT ggplot2 ggpubr nlme numDeriv RColorBrewer scales shiny shinyWidgets stringr tidyr]; }; video = derive2 { name="video"; version="0.1.1"; sha256="0h500mpbjiwggx1m8zfydhr9n4v27is9s46ay9856d2lgv2srlfg"; depends=[htmlwidgets jsonlite shiny]; }; vietnamcode = derive2 { name="vietnamcode"; version="0.1.1"; sha256="0vc0c1fg30afar2dkch5h27b8jbglcd9ja6d5hcypnibqz4c68vz"; depends=[]; }; vietnameseConverter = derive2 { name="vietnameseConverter"; version="0.4.0"; sha256="1bnscv1yz4hr6cvpavdj2gjn6dqy96rbagxl9280a2xxav09mps3"; depends=[gsubfn sf utf8]; }; viewpoly = derive2 { name="viewpoly"; version="0.3.2"; sha256="1say30d46vj67ng5mprhwl02jf9d0kv573j80r05z08szmcm4sxb"; depends=[abind config curl dplyr DT ggplot2 ggpubr golem JBrowseR markdown plotly reshape2 shiny shinydashboard shinyjs shinythemes shinyWidgets tidyr vroom]; }; - viking = derive2 { name="viking"; version="1.0.0"; sha256="0ggnp96igmdzp8acyj57mkkd2xd3ixcnakpwp417yzsdqqlg20sf"; depends=[]; }; + viking = derive2 { name="viking"; version="1.0.1"; sha256="1wrkv044646756fmc4bmij06pbmzyi8jydbpisngs3pa4wnixcvw"; depends=[]; }; villager = derive2 { name="villager"; version="1.1.1"; sha256="0g72zpsqi39ax44n3s3x66b1fbgyx6w2wraf531jsy7vj95ivr2p"; depends=[R6 readr uuid]; }; vimp = derive2 { name="vimp"; version="2.3.1"; sha256="1m88zjxv6zjbbln851kwj9wfam59q8z93s6dz6lmga530d7z4xja"; depends=[boot data_table dplyr magrittr MASS rlang ROCR SuperLearner tibble]; }; vimpclust = derive2 { name="vimpclust"; version="0.1.0"; sha256="0ly7piz7q88sh2g7zq5b2pqph9467b4fclgq9amm0m7xc8vrv4f9"; depends=[ggplot2 mclust PCAmixdata Polychrome rlang]; }; @@ -18889,8 +19117,8 @@ in with self; { vioplot = derive2 { name="vioplot"; version="0.4.0"; sha256="1db7g0378jbcd6ssb7afff4y4r0v472qnb625hfwixx4wf1v8aap"; depends=[sm zoo]; }; vip = derive2 { name="vip"; version="0.3.2"; sha256="1qsvyfms79sn46jdmq7q5r0d6gwjqhr9pll1y776rx0bj7vx1ax5"; depends=[ggplot2 gridExtra magrittr plyr tibble]; }; vipor = derive2 { name="vipor"; version="0.4.5"; sha256="112gc0d7f8iavgf56pnzfxb7hy75yhd0zlyjzshdcfbnqcd2a6bx"; depends=[]; }; - viridis = derive2 { name="viridis"; version="0.6.2"; sha256="048kwhbhd49g86cq11fl7vm0whwhjl5gs9xjn040lwcjv78qrdb9"; depends=[ggplot2 gridExtra viridisLite]; }; - viridisLite = derive2 { name="viridisLite"; version="0.4.1"; sha256="15zaf2c7kzjf3i0g7y8w6jlgfkpprqj2zl346y5imz75r8fdp5m8"; depends=[]; }; + viridis = derive2 { name="viridis"; version="0.6.3"; sha256="1z0zgwf3xlwxagphcavkxm09i2pbqmdxil8c39h1jwlr8nbvfq2a"; depends=[ggplot2 gridExtra viridisLite]; }; + viridisLite = derive2 { name="viridisLite"; version="0.4.2"; sha256="18g1rk24kr47jl01r70vvni2146fl9xxpjcvjp6d5k6y64fi2gw9"; depends=[]; }; virtualPollen = derive2 { name="virtualPollen"; version="1.0.1"; sha256="0caiyl7h9qn3nv34dafv5rs4v7n4avyjpng0rkz6aw3ri1zn8sa0"; depends=[cowplot ggplot2 mgcv plyr tidyr viridis]; }; virtualspecies = derive2 { name="virtualspecies"; version="1.5.1"; sha256="0l86awcjq6i1lqax596xy5qfmzwiz3cwp2rczvgg37fdrym97cm3"; depends=[ade4 raster rworldmap sp]; }; virtuoso = derive2 { name="virtuoso"; version="0.1.8"; sha256="1smb8sjfqcp3jflplgf92swasxzrp72fnnqwyisf87pjknm91qsc"; depends=[curl DBI digest fs ini odbc processx ps rappdirs]; }; @@ -18914,14 +19142,14 @@ in with self; { visualFields = derive2 { name="visualFields"; version="1.0.1"; sha256="1z62xappwjdv9f7ql5spydkb626rdj3hvpvzy3d71fwm0y3qwki3"; depends=[boot combinat deldir dplyr DT gtools Hmisc htmlTable oro_dicom plotrix polyclip pracma rlang shiny shinyjs XML]; }; visualize = derive2 { name="visualize"; version="4.4.0"; sha256="1k3jpvj1yysxc4g1a1w3m1y91104aqxqv8jh9qdd23gwy7a29525"; depends=[]; }; visualpred = derive2 { name="visualpred"; version="0.1.0"; sha256="19jq9h9kiv4vbzqz8zrv5gqb1bprq5jy7mcxvdwpfnna2rja6q4z"; depends=[data_table dplyr e1071 FactoMineR gbm ggplot2 ggrepel magrittr MASS MBA mltools nnet pROC randomForest]; }; - visvow = derive2 { name="visvow"; version="1.3.7"; sha256="0bl03aackg417931m60m1bxlqny35lcqhrvlsjj944j8kxmw81zp"; depends=[Cairo dplyr DT formattable ggdendro ggplot2 ggrepel MASS PBSmapping plot3D plyr pracma psych Rdpack readxl Rtsne shiny shinyBS shinybusy splitstackshape svglite tidyr tikzDevice WriteXLS]; }; + visvow = derive2 { name="visvow"; version="1.3.9"; sha256="08cbh2hqvxmd1j1y6p3aigmj6f6fdpw3ffda09j3himmfnxaw1y3"; depends=[Cairo dplyr DT effectsize formattable ggdendro ggplot2 ggrepel MASS PBSmapping plot3D plyr pracma psych Rdpack readxl Rtsne shiny shinyBS shinybusy splitstackshape svglite tidyr tikzDevice WriteXLS]; }; visxhclust = derive2 { name="visxhclust"; version="1.1.0"; sha256="1wx16mg5g58p4mgf5y776i5ahgpqqjy4wbfqhfjph36mrhs6qr22"; depends=[bsplus circlize cluster clValid ComplexHeatmap dendextend dplyr DT dunn_test fastcluster ggplot2 kableExtra knitr patchwork RColorBrewer readr shiny shinycssloaders shinyhelper tidyr]; }; vita = derive2 { name="vita"; version="1.0.0"; sha256="114p2lzcr8rn68f0z4kmjdnragqlmi18axda9ma4sbqh8mrmjs9v"; depends=[randomForest Rcpp]; }; vitae = derive2 { name="vitae"; version="0.5.3"; sha256="19qcympcs9w9klrvhz5ls4p6186dcddv5dv7kn7jkc0js84i9sbv"; depends=[dplyr glue jsonlite knitr pillar rlang rmarkdown tibble vctrs xfun yaml]; }; vitality = derive2 { name="vitality"; version="1.3"; sha256="17micfmlksnw167vavvhlk431fm20k74y5ggs47pgz5fwpm854zp"; depends=[]; }; - vivainsights = derive2 { name="vivainsights"; version="0.3.0"; sha256="18xzk7ka4jfqxi5xzhivwjgqkhp1lrqa6cz6cggiz34x8p1aqlq8"; depends=[data_table dplyr DT ggplot2 ggraph ggrepel ggwordcloud htmltools igraph magrittr markdown networkD3 purrr reshape2 rmarkdown scales tidyr tidyselect tidytext wpa]; }; + vivainsights = derive2 { name="vivainsights"; version="0.3.1"; sha256="0zr8l54sgcxsiqqiq3bvq6zp0i6j8f3p41p3g4fhma1n4dgk65ns"; depends=[data_table dplyr DT ggplot2 ggraph ggrepel ggwordcloud htmltools igraph magrittr markdown networkD3 purrr reshape2 rmarkdown scales tidyr tidyselect tidytext wpa]; }; vivaldi = derive2 { name="vivaldi"; version="1.0.1"; sha256="1dvihjc6vjzg2w1j0q6vjhlhpwkknwsd97lpbqbfpacpp337mvx8"; depends=[dplyr ggplot2 glue magrittr plotly seqinr tidyr tidyselect vcfR]; }; - vivid = derive2 { name="vivid"; version="0.2.6"; sha256="0sg8chg2zjirh823qlr7ysk1n6fm989bxcw9rfgp503xxp0izmd2"; depends=[colorspace condvis2 DendSer dplyr flashlight GGally ggalt ggnewscale ggplot2 igraph RColorBrewer sp]; }; + vivid = derive2 { name="vivid"; version="0.2.7"; sha256="08ngzzni1dyfnfqn7y6f6xxb6lvf2p06nnzydwn6n0psfg5976lp"; depends=[colorspace condvis2 DendSer dplyr flashlight GGally ggalt ggnewscale ggplot2 igraph RColorBrewer sp]; }; vivo = derive2 { name="vivo"; version="0.2.1"; sha256="1cfval06byviw7himr5nql34h4jaway9gb6dzya3v994p7v851cg"; depends=[DALEX ggplot2]; }; vizdraws = derive2 { name="vizdraws"; version="1.2"; sha256="1r4kn8ki4ymqg87j223fs6fs9vyscc5bsfbnc4v9gvjy96jjxy3h"; depends=[dplyr htmlwidgets magrittr stringr]; }; vkR = derive2 { name="vkR"; version="0.2"; sha256="1pk444fcw4yyv2dnfrw9vynbpc4gwr5yv9jd41djp9yipdf6d53l"; depends=[httr jsonlite purrr XML]; }; @@ -18932,20 +19160,22 @@ in with self; { vmr = derive2 { name="vmr"; version="0.0.6"; sha256="0vm4wxf9zb2xgjd9xam3gy6mqr621x922ldshrxs4cibaag3lq5x"; depends=[curl jsonlite]; }; vntrs = derive2 { name="vntrs"; version="0.1.0"; sha256="0ffjjzcs7i4zli7bn83gkgi0q7dmgyxrhv9l3gdambma9hsig45c"; depends=[trust]; }; vocaldia = derive2 { name="vocaldia"; version="0.8.4"; sha256="1nr1w85m4xhk6777iqww94mb82c3smfhr96mybpi9m1kk7f6rv0i"; depends=[]; }; - voice = derive2 { name="voice"; version="0.4.17"; sha256="17k9wnh475ygvk1xdmzbasvdhl8j91l4j1rrf9yn7af01bs7mw6z"; depends=[dplyr R_utils reticulate seewave tibble tidyselect tuneR wrassp zoo]; }; + voi = derive2 { name="voi"; version="1.0"; sha256="1ncxlswjh5z239kipb3mq5j0xvxawhrxd4w6jmdz150gq510nccq"; depends=[dbarts earth ggplot2 gridExtra Matrix mgcv mvtnorm posterior progress]; }; + voice = derive2 { name="voice"; version="0.4.21"; sha256="0fh1k0596npm6yah992g3hc79g6lh12b7k97nnxlm1pgpdbb503v"; depends=[dplyr R_utils reticulate seewave tibble tidyselect tuneR wrassp zoo]; }; + vol2birdR = derive2 { name="vol2birdR"; version="1.0.1"; sha256="0f6zjrsi7slw7wx84q4iq1afmwclmwjq8ly1r4m9l2hkfg3nclim"; depends=[assertthat pkgbuild Rcpp RcppGSL rlang withr]; }; volatilityTrader = derive2 { name="volatilityTrader"; version="1.0.1"; sha256="1zz6286kmzcj8k66mpj9nidsf86dkw2ms75ck6rrvnl5h1idcacj"; depends=[dplyr ggplot2 magrittr tibble]; }; - volcano3D = derive2 { name="volcano3D"; version="2.0.8"; sha256="08qxp9bgm0dbndv1c91xpl0yajmyrxbpss0ga3c47ldyhc0iq7sd"; depends=[ggplot2 ggpubr htmlwidgets magrittr matrixTests plotly Rfast rlang]; }; + volcano3D = derive2 { name="volcano3D"; version="2.0.9"; sha256="1k1n49pzsdkwia09mf9ra75cbnx49q99ygn5c92kyq8kqv83d1w8"; depends=[ggplot2 ggpubr htmlwidgets magrittr matrixTests plotly Rfast rlang]; }; volcanoPlot = derive2 { name="volcanoPlot"; version="1.0.0"; sha256="06nkv56c36wgnb7s6gkpp14syzhm5zm2wdfjx9wamxp5cf0wk3mk"; depends=[dplyr DT fmsb ggplot2 purrr shiny tidyr]; }; - volesti = derive2 { name="volesti"; version="1.1.2-4"; sha256="1vhypy4whdw4k3lqv5p9bz3jh3gzpfj366xzfwsmy7w8zjk5iq05"; depends=[BH Rcpp RcppEigen]; }; + volesti = derive2 { name="volesti"; version="1.1.2-6"; sha256="1ykmxl12ap21ds23nqlc861zn24hs9y7h0kkihyhpxnwfvyx1fbp"; depends=[BH Rcpp RcppEigen]; }; volleystat = derive2 { name="volleystat"; version="0.2.0"; sha256="0n1r0bvvmba21cs3qgpnw9jxpgl2n82fhxa40sa1w2gav5rch5i6"; depends=[]; }; - voluModel = derive2 { name="voluModel"; version="0.1.9"; sha256="1969rkl5msvl6vspjgk0pkg9lp7h7w521866g0ac7jvsy41n3jm6"; depends=[dismo dplyr fields ggplot2 ggtext latticeExtra rangeBuilder raster sf terra viridisLite]; }; + voluModel = derive2 { name="voluModel"; version="0.2.0"; sha256="1ym9cpx4ygzh9956y7sg1zl5kagamkg1wmr3ydzff1gz6ldg7gam"; depends=[dplyr fields ggplot2 ggtext modEvA rangeBuilder sf terra viridisLite]; }; voronoiTreemap = derive2 { name="voronoiTreemap"; version="0.2.0"; sha256="1wvnqdrvba4ss4f3k8gzb720irdq2brv2aaq16ywifv8fnjf02r3"; depends=[data_tree DT htmlwidgets rlang shiny shinyjs]; }; vortexRdata = derive2 { name="vortexRdata"; version="1.0.5"; sha256="0b47q3aslz4110a1bfaa103i098y2ngzrjh01rwasq3gd6xbif9n"; depends=[]; }; voson_tcn = derive2 { name="voson.tcn"; version="0.5.0"; sha256="1fylp5770by5ybpda6n8c3y8n7zsmc62f5q11k0ndh5kp7ka11cb"; depends=[dplyr httr jsonlite openssl progress rlang stringr tibble tidyr]; }; vosonSML = derive2 { name="vosonSML"; version="0.32.7"; sha256="1fs939zq2vnilc3fp6cplsqk0iz71i8xjdcbvspsccw7rsdp2qs8"; depends=[data_table dplyr httr jsonlite lubridate purrr rlang stringr textutils tibble tidyr]; }; vote = derive2 { name="vote"; version="2.3-2"; sha256="12kvz83ncansrsvw4mrws6fafn9fy6c0nvqvknrzl08kv290c9dr"; depends=[data_table fields formattable knitr]; }; voteogram = derive2 { name="voteogram"; version="0.3.2"; sha256="16bhnf9p2sanbcsdmdjb4iqca7hx4ghd40psxavndv1vkhw3cv0r"; depends=[dplyr ggplot2 jsonlite scales tibble]; }; - votesmart = derive2 { name="votesmart"; version="0.1.0"; sha256="19pp0lnvvii9ac8zr7x775j7a4lzfnjkaall47a3lsv98ql85cza"; depends=[dplyr gestalt glue httr jsonlite lubridate magrittr purrr snakecase stringr tidyr]; }; + votesmart = derive2 { name="votesmart"; version="0.1.2"; sha256="184q553p8n76jch4xiyfsqbczbjza3v9s8xsd8zwckxq5j2cgyvp"; depends=[dplyr glue httr jsonlite lubridate magrittr purrr snakecase stringr tidyr]; }; votesys = derive2 { name="votesys"; version="0.1.1"; sha256="1z7cx3rj3bfrkb6jkmf1m1wad5ff46zrab5vhk69wf3jbwd9h920"; depends=[data_table gtools Matrix]; }; vottrans = derive2 { name="vottrans"; version="1.0"; sha256="1fp7jrw072ws39bqsg88bm2qndcv68aa2vdqwgnza58p1dfq3x9f"; depends=[quadprog]; }; vov = derive2 { name="vov"; version="0.1.2"; sha256="0hbb9zj33a98rv4grm644k650pq6kgmm6l01mkd4p0ic0mxa9fyh"; depends=[glue htmltools shiny]; }; @@ -18955,14 +19185,14 @@ in with self; { vprr = derive2 { name="vprr"; version="0.2.3"; sha256="02hx3wbj921fsir8yldkgcygci01w1171bxsxi2khplck4gkqn9i"; depends=[cmocean dplyr ggplot2 gridExtra gsw interp lubridate magick metR oce stringr tidyr usethis withr]; }; vrcp = derive2 { name="vrcp"; version="0.1.1"; sha256="1wrch1dqy752gkj24h1dgi2x3kf1797xj4pf1s9mszf3x3ic905d"; depends=[ggplot2]; }; vrnmf = derive2 { name="vrnmf"; version="1.0.2"; sha256="0n0kmzhygaii9kipcmr943s0vcf8brxgsk25m9illd4fij6nwpp2"; depends=[ica lpSolveAPI Matrix nnls quadprog]; }; - vroom = derive2 { name="vroom"; version="1.6.1"; sha256="0z40655l03gz2pdxlm9zq5f3c5ahpnc2qqwdnglcgy8j6bak63pb"; depends=[bit64 cli cpp11 crayon glue hms lifecycle progress rlang tibble tidyselect tzdb vctrs withr]; }; + vroom = derive2 { name="vroom"; version="1.6.3"; sha256="0qsz38v64b51jpm2s93lcci4xjjxs8sws4l4p1iwymsa5gjh0j6w"; depends=[bit64 cli cpp11 crayon glue hms lifecycle progress rlang tibble tidyselect tzdb vctrs withr]; }; vrtest = derive2 { name="vrtest"; version="1.1"; sha256="136p6qhw7ick8dy7gkhv8dww7ici0zg47rk2qmvc9lc1q55j4kf1"; depends=[]; }; - vscc = derive2 { name="vscc"; version="0.4"; sha256="0ym9wy661d6m2a9drix5jb6r2sm6kqs314yc46qgq7qmdscdw52b"; depends=[mclust teigen]; }; + vscc = derive2 { name="vscc"; version="0.5"; sha256="0g2zhmysys4y5hpncm0mapv94chgrc5w5vvicbb4ic89nl31j3gm"; depends=[ManlyMix mclust teigen]; }; vsd = derive2 { name="vsd"; version="0.1.0"; sha256="18whnvary4glblzx1vxf3yzsllnnnbnyijwhbw7bi3agppnwrf22"; depends=[dplyr flexsurv ggplot2 ggpubr magrittr muhaz survival survminer]; }; vsgoftest = derive2 { name="vsgoftest"; version="1.0-1"; sha256="0vypi4cf04bljmx3jwq3ixs86ivd6p7a825ik189y71fyqg9g70v"; depends=[fitdistrplus Rcpp]; }; vsp = derive2 { name="vsp"; version="0.1.1"; sha256="0aa3vqzazh0x5irbmqh9ac1xiprwnbgbrjl9bybxzynl91hwg9yw"; depends=[ggplot2 glue invertiforms LRMF3 magrittr Matrix rlang RSpectra tibble withr]; }; vstsr = derive2 { name="vstsr"; version="1.1.0"; sha256="071nfxkwwpbp2d8khxq7d1pp268pa1fcfj619bs6xwg4wk9srr3k"; depends=[httr jsonlite R6 RCurl]; }; - vtable = derive2 { name="vtable"; version="1.4.3"; sha256="039hfw99hyjyvjf0m9f9fqa7ff83v6avsh3x9wncf3v54k7fcqq4"; depends=[haven kableExtra knitr rstudioapi sjlabelled]; }; + vtable = derive2 { name="vtable"; version="1.4.4"; sha256="1fc8p4d7c7jy2sxpcbf1qjaq2qz678v0ivlmrxphbmdh6x2lscwy"; depends=[haven kableExtra knitr rstudioapi sjlabelled]; }; vtreat = derive2 { name="vtreat"; version="1.6.3"; sha256="181nsjl811m3k1123bvgnnwr253sc2mbj4ljzmawz9wl7dfbwfij"; depends=[digest wrapr]; }; vtree = derive2 { name="vtree"; version="5.6.5"; sha256="0qszya11qh2xzq1blbrcli3l8hhf0dannhh2hn3gi59c9dn3jr16"; depends=[DiagrammeR DiagrammeRsvg htmlwidgets rsvg shiny utf8]; }; vtype = derive2 { name="vtype"; version="0.8"; sha256="0j070bn86a6hlg99h2qaf0dlbnjjsmx1zdcmvl3acymr31bqyvrj"; depends=[randomForest]; }; @@ -18975,7 +19205,7 @@ in with self; { vvsculptor = derive2 { name="vvsculptor"; version="0.4.10"; sha256="076fdzhr5b39k1vavj3jf7897vpdjgfbf8fxxqi6y4cy0pz4iisi"; depends=[dplyr]; }; vwline = derive2 { name="vwline"; version="0.2-2"; sha256="1hilr996xn5wh8kfyab55w2i1c02a8x909h4ahag5q6s7603qng5"; depends=[gridBezier polyclip]; }; wCorr = derive2 { name="wCorr"; version="1.9.6"; sha256="1f71fxn1cp0rgjf7lmx49dll35ys3lz7s8pw2qrfy59c86wnqvhs"; depends=[minqa mnormt Rcpp RcppArmadillo]; }; - wINEQ = derive2 { name="wINEQ"; version="1.1.2"; sha256="0diwm01d50pq7zkglsz7gkn48q6iav2z90v0ldr7pwzgjrr60d4v"; depends=[dplyr sampling]; }; + wINEQ = derive2 { name="wINEQ"; version="1.2.0"; sha256="1b47dxa9q34xylp2bvzl0c9bbsd2l4fw8avq50575sc3w3v0bs62"; depends=[dplyr sampling]; }; wISAM = derive2 { name="wISAM"; version="0.2.8"; sha256="0c5ic98ihpzkycsj9wg0127civm4w1rmkkw6zsjp8sfn20cl8a8z"; depends=[MASS]; }; wNNSel = derive2 { name="wNNSel"; version="0.1"; sha256="19j2yz6lvkxpmjr0vv6pjc7j1c02y0hb3gay5sy1y0xk706aggb5"; depends=[]; }; wPerm = derive2 { name="wPerm"; version="1.0.1"; sha256="0f3v0kba87wkwyii0pzvs6a8ja897aifpvwkvryl2hzxxxaml7z4"; depends=[]; }; @@ -18986,11 +19216,11 @@ in with self; { waiter = derive2 { name="waiter"; version="0.2.5"; sha256="0ya92qr25ssfkzn888b7rr8rn0304f3gz4h4pnc2a95rknbmxhls"; depends=[htmltools R6 shiny]; }; wakefield = derive2 { name="wakefield"; version="0.3.6"; sha256="1rssh6v8m6fim2pvm4cjw8cbni77bv5qp0rwi6vwdl3jhi5zws7n"; depends=[chron dplyr ggplot2 stringi]; }; wal = derive2 { name="wal"; version="0.1.0"; sha256="0n81c2i2wzmy33kk1k4zjjgv1irh8xqw05clif8n86qr4m0a01sv"; depends=[freesurferformats imager jpeg png spacesXYZ]; }; - waldo = derive2 { name="waldo"; version="0.4.0"; sha256="1aky28rn70l24s0sygl36267cf7hjzhchagsz26abfxwr7p8kvjp"; depends=[cli diffobj fansi glue rematch2 rlang tibble]; }; + waldo = derive2 { name="waldo"; version="0.5.1"; sha256="0inzdwna22axhjw0jdrk800g7zbkpcs7g1cmdi83r7j4zxn0ggs5"; depends=[cli diffobj fansi glue rematch2 rlang tibble]; }; walker = derive2 { name="walker"; version="1.0.6-1"; sha256="0kmk8lxg3m3436bdghqizjgzln4lqrs3ks1mgfza63n59z5d20h8"; depends=[bayesplot BH coda dplyr ggplot2 Hmisc KFAS loo Rcpp RcppArmadillo RcppEigen RcppParallel rlang rstan rstantools StanHeaders]; }; walkscore = derive2 { name="walkscore"; version="0.1.2"; sha256="0ayqkmj7iramg234n3ygvssqjy70jw7x327xjzn2izdyfww59z8k"; depends=[dplyr httr tidyr]; }; walkscoreAPI = derive2 { name="walkscoreAPI"; version="1.2"; sha256="1c2gfkl5yl3mkviah8s8zjnqk6lnzma1yilxgfxckdh5wywi39fx"; depends=[]; }; - wallace = derive2 { name="wallace"; version="2.0.4"; sha256="17ymqms80w7l4g78wqvamhg2p70mvz7knd5cda8ijlhyr9zanq73"; depends=[dplyr DT ecospat ENMeval glue knitcitations leafem leaflet leaflet_extras magrittr RColorBrewer rgdal rgeos rlang rmarkdown shiny shinyalert shinyjs shinyWidgets spocc spThin zip]; }; + wallace = derive2 { name="wallace"; version="2.0.5"; sha256="1gwlnph0dwivn7zpv6pd2gyhaampfb9ffzicjvsj2v2n4ncvb92f"; depends=[dplyr DT ecospat ENMeval glue knitcitations leafem leaflet leaflet_extras magrittr RColorBrewer rgdal rgeos rlang rmarkdown shiny shinyalert shinyjs shinyWidgets spocc spThin zip]; }; wally = derive2 { name="wally"; version="1.0.10"; sha256="1d03vxn6q7v0nsrkd7dxkkv3siysgicv6c13fkvwmypln9vsl6sl"; depends=[data_table prodlim riskRegression]; }; walmartAPI = derive2 { name="walmartAPI"; version="0.1.5"; sha256="1nng8izncj2nmmpywn1ggpzvjh8q7y3q6260qhy9kbmvrrl26spf"; depends=[dplyr glue httr magrittr purrr stringr tibble]; }; walrus = derive2 { name="walrus"; version="1.0.5"; sha256="0z674sg78rdv9rmqr7s4w9rw8diciifwr4bc2v57yfvp0n9gcys4"; depends=[ggplot2 jmvcore R6 WRS2]; }; @@ -19002,7 +19232,7 @@ in with self; { washdata = derive2 { name="washdata"; version="0.1.3"; sha256="0m7rwwi189sbsv3144x14jqmfax30f6ri1pisy47yggmmjpdplps"; depends=[]; }; washeR = derive2 { name="washeR"; version="0.1.3"; sha256="082myz7lw9dyk4ygyj0q39n4h1gghsd1q7667ngzxa20lm0658wd"; depends=[gplots]; }; washex = derive2 { name="washex"; version="1.2.0"; sha256="0g5cgs6y3l7ng4bcia1w3ysb8z7s3187ph5g052bssd3w01kim6g"; depends=[curl dplyr httr purrr rlang XML xml2]; }; - waspasR = derive2 { name="waspasR"; version="0.1.1"; sha256="1mxlplz3n119lxf73i44zcw1pn3prmgqyblysphd3xnrdmbhyq1a"; depends=[]; }; + washi = derive2 { name="washi"; version="0.1.0"; sha256="0b2fdnp92jny59q1qvgi3al83294pg8blfgg0q2lr4phjicxmcp5"; depends=[cli extrafont flextable ggplot2 officer scales]; }; waspr = derive2 { name="waspr"; version="1.0.0"; sha256="0rs7h9pjiqq7as5k7yrj3phn6lgdl7dzyirbmk2jjp7mw9iqhy9i"; depends=[BH Rcpp RcppArmadillo]; }; waterData = derive2 { name="waterData"; version="1.0.8"; sha256="0884agh876wf3qlbc75fbaa47x2iwvncz7r2l25qw34n8lxq1yr6"; depends=[dataRetrieval lattice latticeExtra lubridate xml2]; }; waterYearType = derive2 { name="waterYearType"; version="1.0.1"; sha256="09brbqcd41khycz9lhn84w68wpk8lsdnzb6lzc10gm5s5ambgj06"; depends=[]; }; @@ -19022,28 +19252,30 @@ in with self; { waveslim = derive2 { name="waveslim"; version="1.8.4"; sha256="1510xpkgrhdw394m5anxccdczjikcxazyd09ix2z73i15akyx3j0"; depends=[]; }; wavethresh = derive2 { name="wavethresh"; version="4.7.2"; sha256="0mmn8f5x8iw8vn0zsskzs3g41bm28prvzy9bmbng8va94g5795ws"; depends=[MASS]; }; waydown = derive2 { name="waydown"; version="1.1.0"; sha256="1yjx9cd8h8rsi44s7dcqrvfmsbjhw7vkg2z7bl4knsgbki0c978g"; depends=[Matrix numDeriv]; }; - waywiser = derive2 { name="waywiser"; version="0.3.0"; sha256="0l668f56k860b5vxb50z3nrxd3688xsrlwsrkyb3fi8xblmscqh5"; depends=[dplyr fields FNN glue hardhat Matrix purrr rlang sf spdep tibble tidyselect yardstick]; }; + waywiser = derive2 { name="waywiser"; version="0.4.0"; sha256="0r1fw4738f7sq22ysxc13182db5zqvl9mh6zgcb2bmsd9s1mha0a"; depends=[dplyr fields FNN glue hardhat Matrix purrr rlang sf spdep tibble tidyselect vctrs yardstick]; }; wbacon = derive2 { name="wbacon"; version="0.6"; sha256="0b91h71fs07knnqrbr167wdlb1iakafbadzr4zznndwplx3ygpbz"; depends=[hexbin]; }; wbs = derive2 { name="wbs"; version="1.4"; sha256="0ibrf30riavy6shaxgiznwh4gmnkx92260gsl0d74jkys98mlxdj"; depends=[]; }; wbsd = derive2 { name="wbsd"; version="1.0.0"; sha256="16jhimsq8symf6f2awczqkaqkdmlkzhmgk01iimhkvqlx8g2v219"; depends=[Rcpp RcppEigen]; }; wbstats = derive2 { name="wbstats"; version="1.0.4"; sha256="1va3lrksr5zg4k729xvbh176f8zcp9vfrvwxcp04znyh1rvmh6vz"; depends=[dplyr httr jsonlite lifecycle lubridate magrittr readr rlang stringr tibble tidyr]; }; wbsts = derive2 { name="wbsts"; version="2.1"; sha256="07h3wqmb9ya878fwdj49r0npks0pnd3jlnzri1cmf27c691hwka4"; depends=[mvtnorm Rcpp wavelets]; }; wcde = derive2 { name="wcde"; version="0.0.5"; sha256="1nrzfcrkrq9vff4anj94wcy3jrmjgrm4py854dm4mcsykprxwgd1"; depends=[countrycode dplyr forcats magrittr progress purrr readr stringr tibble tidyr]; }; + wcox = derive2 { name="wcox"; version="1.0"; sha256="13shz5iz2ab9yqp24m6z7ciw70sdg2jdyqifmshq4flp4a737fr7"; depends=[dplyr survival tidyr]; }; wdm = derive2 { name="wdm"; version="0.2.3"; sha256="0fsr5kskg71bwhc5zzhalm29cc7z9p9y8wdmgz2bisgry3v880az"; depends=[Rcpp]; }; wdman = derive2 { name="wdman"; version="0.2.6"; sha256="0n0wwb9ip6qc8qzdxn4dsqfbc8b3f607n8l6jigryd7g83ibnbp6"; depends=[assertthat binman processx semver yaml]; }; - wdnet = derive2 { name="wdnet"; version="1.0.0"; sha256="1yzk49vryfws9yhhflpka1djlb98fa8lddayq3gia76ki2nj1yvk"; depends=[CVXR igraph Matrix rARPACK Rcpp RcppArmadillo RcppXPtrUtils wdm]; }; + wdnet = derive2 { name="wdnet"; version="1.1.0"; sha256="0d5qyls9lsf3cwdayklw5hpk80ihp9pzp5jxmpnnc39s1amgpq2m"; depends=[CVXR igraph Matrix rARPACK Rcpp RcppArmadillo RcppXPtrUtils wdm]; }; wdnr_gis = derive2 { name="wdnr.gis"; version="0.1.4"; sha256="071mjqk117xidqva5qp9xqnca91c5i28j4pv5k0ccfcz6mlj9sbm"; depends=[arcpullr dplyr ggplot2 httr jsonlite rlang sf]; }; wdpar = derive2 { name="wdpar"; version="1.3.4"; sha256="1nb8gazwmv55gcwjn8djwhv5b9dm1yligyqcj1czs5frxfhqja92"; depends=[assertthat cli countrycode curl httr lwgeom pingr progress rappdirs sf sp tibble webdriver withr xml2]; }; weaana = derive2 { name="weaana"; version="0.1.1"; sha256="1wjvn78fkgc28ag1idy7h6sm0rvl57wbqdbxgbl3g5xv844vh8ls"; depends=[dplyr lubridate magrittr reshape2 rlang settings tibble]; }; weakARMA = derive2 { name="weakARMA"; version="1.0.3"; sha256="16dzyw7jiyqv9hd94dff9lxhqv9rwib1xs1km0xfqcy6xa2jhw8w"; depends=[CompQuadForm MASS matrixStats vars]; }; wearables = derive2 { name="wearables"; version="0.8.1"; sha256="0fjf43cgna1mg4mgg98kqhhl88yfhrr57rln2z6xm6d6bj73q5zn"; depends=[dplyr futile_logger ggplot2 kernlab lubridate magrittr padr R_utils RHRV signal varian waveslim xts]; }; + weatherindices = derive2 { name="weatherindices"; version="0.1.0"; sha256="1rqkrbzbihgygx2bg6lpkxqlwmdk88ljdp4j02xygvm0brqy2dc9"; depends=[]; }; weathermetrics = derive2 { name="weathermetrics"; version="1.2.2"; sha256="1hjhgsy3v8328hv4czxxz7kp68sxc10sy10f3dv5j8f6pka6qlsp"; depends=[]; }; webSDM = derive2 { name="webSDM"; version="1.1-3"; sha256="0vhwxldxfbyy8ipadmcn2iicca3fndnvqvyji6c6k5hqpqxzj3l5"; depends=[abind bayesplot brms broom_mixed dismo dplyr GGally ggplot2 glmnet gridExtra igraph jtools Matrix rstanarm rstantools]; }; webchem = derive2 { name="webchem"; version="1.2.0"; sha256="0mvd0hppdrqngg1j7x2sdh3nkdb3zmsdf1gwqvzm128v6clsi7ls"; depends=[base64enc data_tree dplyr httr jsonlite purrr rlang rvest stringr tibble xml2]; }; webdeveloper = derive2 { name="webdeveloper"; version="1.0.5"; sha256="1nw97df9q0dpzl82pdybw527hc407ch2xg8f0s2z4kf89yp6ckhg"; depends=[future html5 httpuv promises readr stringi]; }; webdriver = derive2 { name="webdriver"; version="1.0.6"; sha256="0k87any9rvv367p2zwy89r3rxszsq3w78pzdq36by4ijn659la2l"; depends=[base64enc callr curl debugme httr jsonlite R6 showimage withr]; }; - webexercises = derive2 { name="webexercises"; version="1.0.0"; sha256="1z0dqiqk0v6h97qg89nwn9d57zn1png066va8dirk3mmk4jlfrqc"; depends=[jsonlite knitr rmarkdown yaml]; }; - webfakes = derive2 { name="webfakes"; version="1.1.7"; sha256="1f7n8i4z6vcd5p0kr3wg4g2hvnm0vsh3qwlmfbrkspi9k7x4w0kf"; depends=[]; }; + webexercises = derive2 { name="webexercises"; version="1.1.0"; sha256="1r2wgg89a84q54mrwqv4wcsjvcndiwwjn6rk7qz37pfyciv68hzy"; depends=[jsonlite knitr rmarkdown rstudioapi yaml]; }; + webfakes = derive2 { name="webfakes"; version="1.2.0"; sha256="1wirc2g3nqb1nnj7ndgi6qmnn3j846wfsndfrgnhbg2if1pq5l37"; depends=[]; }; webglobe = derive2 { name="webglobe"; version="1.0.3"; sha256="0gbg4pai4cn7hdc1943aqpx4bn3vgc82zp93a1wl6bmmajv1da4b"; depends=[geojsonio httpuv jsonlite]; }; webmockr = derive2 { name="webmockr"; version="0.9.0"; sha256="1a590fyzmag1p6c9a82yp93wd1s4jdznk0416i0pv8r5jwarkdv7"; depends=[base64enc crul curl fauxpas jsonlite magrittr R6 urltools]; }; webmorphR = derive2 { name="webmorphR"; version="0.1.1"; sha256="1f3sjzck4ys1knn2jmk472yww65wblrdwdlvn1gz2a00nc738rn4"; depends=[dplyr geomorph ggplot2 httr jsonlite magick progress rsvg]; }; @@ -19065,7 +19297,7 @@ in with self; { weightQuant = derive2 { name="weightQuant"; version="1.0.1"; sha256="0v2wxgvv8v5filiabcd19bmcprfv3l8gg79v6s3c5wmnzir617s5"; depends=[doParallel foreach quantreg stringr]; }; weightedCL = derive2 { name="weightedCL"; version="0.5"; sha256="0gb9p3qvbnqmccsfi3a0hx6i67n5z9fg3jgjrgg6qikgngbq3sld"; depends=[MASS matlab rootSolve sure]; }; weightedGCM = derive2 { name="weightedGCM"; version="0.1.0"; sha256="04c24mxpvqdaprg6627w84ikmwxy96c1zcifn2y5n9ir7dlih5r3"; depends=[GeneralisedCovarianceMeasure mgcv xgboost]; }; - weightedRank = derive2 { name="weightedRank"; version="0.1.6"; sha256="0nl0qynifxj3ndalliffj5mlyfcnmgmjz8hin9mjiras16fj7aas"; depends=[mvtnorm]; }; + weightedRank = derive2 { name="weightedRank"; version="0.2.5"; sha256="0sz2d482cjp0z2wxlqjq745xz3ap6h7v03l19q4y99p86909i0v4"; depends=[mvtnorm sensitivitymv]; }; weightedScores = derive2 { name="weightedScores"; version="0.9.5.3"; sha256="1wf01z94snwbqp22waz7qays3ymg5lsxpfpafdarad2b6mg5j2g8"; depends=[mvtnorm rootSolve]; }; weightedZdiff = derive2 { name="weightedZdiff"; version="0.1.0"; sha256="1mrhjg0h7qiwya8jrmf5h4gc352ahc6fczlk5kfhqw5vkwr0b1k3"; depends=[]; }; weightr = derive2 { name="weightr"; version="2.0.2"; sha256="1qsyak91kdgv48wf6qhpfbiirlg4ba9w6rw8ynjcsnqqdvmly1lb"; depends=[ggplot2 scales]; }; @@ -19116,30 +19348,29 @@ in with self; { wildrwolf = derive2 { name="wildrwolf"; version="0.6.1"; sha256="1cl3rv8v3y8y86cl6y5da63qkzha37f20naaqrypk65rn47savig"; depends=[dreamerr fabricatr fixest fwildclusterboot MASS]; }; wildviz = derive2 { name="wildviz"; version="0.1.2"; sha256="03vhacaxp5fahq5afcf1q0qvmndpqc6a63pnins7h3p8ryvlpx14"; depends=[DBI dplyr ggplot2 ggthemes httr jsonlite lubridate plotly purrr rnoaa RSQLite shiny shinythemes tibble tidyr]; }; wilson = derive2 { name="wilson"; version="2.4.2"; sha256="050hi6rigs024is1ry0yymqapgqfhzpp0ghk5ya028k71k22lksx"; depends=[circlize colourpicker ComplexHeatmap data_table DESeq2 DT factoextra FactoMineR ggplot2 ggrepel gplots heatmaply log4r openssl plotly plyr R6 RColorBrewer reshape rintrojs rje rjson RJSONIO scales shiny shinycssloaders shinydashboard shinyjs shinyWidgets viridis zip]; }; - winch = derive2 { name="winch"; version="0.0.12"; sha256="0k9pgwdp0v4wmqw42dkqakz5f4lhqycgp0c916sdsxxig14phn71"; depends=[procmaps]; }; + winch = derive2 { name="winch"; version="0.1.0"; sha256="0v2kyfr5rm4nbh99ii17qh08i88yv0phyf3d59dxfhq1q8wrl6xb"; depends=[lifecycle procmaps]; }; windAC = derive2 { name="windAC"; version="1.2.10"; sha256="077kl7j1db0g2pnr7gc91x2anbw80y5sbl4gy49rzclbhhnwjlrs"; depends=[mvtnorm sf]; }; windex = derive2 { name="windex"; version="2.0.4.1"; sha256="0iwmb72fwvif6l6carn23f5zrkb5baxszi1imy1ls5c847kvqc0w"; depends=[ape geiger phangorn phytools scatterplot3d]; }; windsoraiR = derive2 { name="windsoraiR"; version="0.1.2"; sha256="1smd3zw5ra1fba6mds3diadcmbw59jlvmrvfzzi4fss91wv50jql"; depends=[jsonlite]; }; winfapReader = derive2 { name="winfapReader"; version="0.1-5"; sha256="01hc0kcm7qfzk47rci6lfmrqs4zfj8z7abqydgi2ckq8n1k2pd0h"; depends=[lubridate]; }; - wingui = derive2 { name="wingui"; version="0.2"; sha256="0yf6k33qpcjzyb7ckwsxpdw3pcsja2wsf08vaca7qw27yxrbmaa3"; depends=[Rcpp]; }; wiqid = derive2 { name="wiqid"; version="0.3.3"; sha256="1d5bckkr6cnixccxaa14n7vbsya5cc00y9mryy1j69shhsmxp5ks"; depends=[coda HDInterval MASS mcmcOutput plotrix truncnorm]; }; - wiseR = derive2 { name="wiseR"; version="1.0.1"; sha256="187ylwhk06957x9zm5r0m6w9wg08im83myz3s4gr927ig8yv3b5f"; depends=[arules bnlearn DescTools dplyr DT graph HydeNet igraph linkcomm missRanger psych RBGL Rgraphviz rhandsontable rintrojs shiny shinyalert shinyBS shinycssloaders shinydashboard shinyWidgets visNetwork]; }; + withdots = derive2 { name="withdots"; version="0.1.1"; sha256="0vpbw9swyi8qf5s2nlml9pdmrzvwn4rpm4gbfsc0vikbzp29dmvi"; depends=[]; }; withr = derive2 { name="withr"; version="2.5.0"; sha256="1h4bzj0am9lawbh1cam1jmgk1xjmn9da14r90w3q984hswz7nc9p"; depends=[]; }; - wk = derive2 { name="wk"; version="0.7.2"; sha256="0bxbdsa5zn867l86k5gsry0rp8s39c99gj4bv8psdzif9vsp52vg"; depends=[]; }; + wk = derive2 { name="wk"; version="0.7.3"; sha256="0990r1cnsnyjq5sj06bz6wx2kjg62qbixilvz8pn9p37120apyz1"; depends=[]; }; wkNNMI = derive2 { name="wkNNMI"; version="1.0.0"; sha256="0qpl1b2134kz9mjl38w93lp3g6kpv9ygv9hygpssm845k02hkw7c"; depends=[foreach infotheo]; }; wkb = derive2 { name="wkb"; version="0.4-0"; sha256="0mah538345npkb06bcj18mb6qnnx8nn7bdqmvqqpbawallh546a9"; depends=[sp]; }; wktmo = derive2 { name="wktmo"; version="1.0.5"; sha256="05pjyk0xsdazbi1x7xfmg097ybybd60zmzzm7sch1ikp05hzn0wb"; depends=[]; }; wkutils = derive2 { name="wkutils"; version="0.1.3"; sha256="01gsvyzxd89j979zdm8q159wgkha277xwsn097ja5absxlny6991"; depends=[Rcpp tibble vctrs wk]; }; wmm = derive2 { name="wmm"; version="1.1.1"; sha256="0qy4cp4d8nlcqlcs4mqjv1f1kf1yh9y2wvh1ak6f049qlj7yfwfb"; depends=[]; }; wmwpow = derive2 { name="wmwpow"; version="0.1.3"; sha256="03rd75r4wih1w7srhnwqxjkirisb43y1sd2f1wzixqj8lq0dmb25"; depends=[lamW MASS smoothmest]; }; - wnl = derive2 { name="wnl"; version="0.7.2"; sha256="1jfw3rz495ljaxs4kwp8xpr71i55kzq8qcjlmw6q04vk5lxhr7rj"; depends=[numDeriv]; }; - wnominate = derive2 { name="wnominate"; version="1.3"; sha256="0k4w6qbmwqd720dsslmb3xl53lr0b16rr0w9frybfq4046g9i2c6"; depends=[pscl]; }; + wnl = derive2 { name="wnl"; version="0.7.3"; sha256="1fsvf4rf1ih40d32i9s7gyqfy5lxrqqny95ydrp3pnfrqcxrrr3h"; depends=[numDeriv]; }; + wnominate = derive2 { name="wnominate"; version="1.4"; sha256="1zidc30j3hqa54spafz2h27a719s347k4i6qqs2jy9zk0ngrgiqz"; depends=[pscl]; }; wodds = derive2 { name="wodds"; version="0.1.0"; sha256="00rk7wmz0rknh4v9p0r6syi1c5dch7wkq7cz9zg6n8d72sia4azv"; depends=[dplyr glue magrittr purrr tibble]; }; woe = derive2 { name="woe"; version="0.2"; sha256="15mvcmwnrqxpzn054lq85vyzq5rgxkiwbd40gnn4s3ny1xdrwgsm"; depends=[]; }; woeBinning = derive2 { name="woeBinning"; version="0.1.6"; sha256="0x890h5fh59n54587adyzphr956fkg3px8i7c378aq1fs7k35gxs"; depends=[]; }; womblR = derive2 { name="womblR"; version="1.0.5"; sha256="0acvv7jylissacvln51pi14a8i9y02q5whrz3sx5dsnvsk00slzm"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; woodValuationDE = derive2 { name="woodValuationDE"; version="1.0.1"; sha256="1sbyl4yd766lhjqghm4hq9162wz0qabiwiwnsiwzdn4fbfihxl7v"; depends=[dplyr]; }; - wooldridge = derive2 { name="wooldridge"; version="1.4-2"; sha256="06rc510wmkakc19hcqmya6mgrg2g3x0fkzjb3ix0rayh7lddhy4p"; depends=[]; }; + wooldridge = derive2 { name="wooldridge"; version="1.4-3"; sha256="16lgdzbjp4yjhihbhz9kpagsdral802lhgg6m94vxprlz2sna1r4"; depends=[]; }; worcs = derive2 { name="worcs"; version="0.1.10"; sha256="0n4ypq430ln13bwc6g2m58pz071g9kwg0qcc450lqf9idal1l1j0"; depends=[credentials digest gert gh prereg ranger renv rmarkdown rticles tinytex usethis yaml]; }; word_alignment = derive2 { name="word.alignment"; version="1.1"; sha256="0inlq96j4zkjncz2v66amz91l5y3b5lx49qi2jg6jbqdldw7aa02"; depends=[data_table openxlsx]; }; word2vec = derive2 { name="word2vec"; version="0.3.4"; sha256="0qj39vms6zgwb8lpmfkppayizdmhakic3pkacglary3ain61vnsk"; depends=[Rcpp RcppProgress]; }; @@ -19156,16 +19387,16 @@ in with self; { workboots = derive2 { name="workboots"; version="0.2.0"; sha256="0n55iypiw59n1f09fbynsdznv5mz885rbz4gaqi48ig0hwz896b7"; depends=[assertthat dplyr generics lifecycle Metrics purrr rlang rsample tibble tidyr vip workflows]; }; workflowr = derive2 { name="workflowr"; version="1.7.0"; sha256="0j1ahxm7xjla1xa38dc8ykn1j5a4yw1p8ivjk3k3va25kam25cp3"; depends=[callr fs getPass git2r glue httpuv httr knitr rmarkdown rprojroot rstudioapi stringr whisker xfun yaml]; }; workflows = derive2 { name="workflows"; version="1.1.3"; sha256="10a1my6glvc32zxrar1ir699lwav7iz2ji4s6g9iprjndf3nm8ms"; depends=[cli generics glue hardhat lifecycle modelenv parsnip rlang tidyselect vctrs]; }; - workflowsets = derive2 { name="workflowsets"; version="1.0.0"; sha256="12wj0m6kqnjh8k5k14kqh40wf14gzyg5l3shhbpr2lvk87l9ssqq"; depends=[cli dplyr generics ggplot2 glue hardhat lifecycle parsnip pillar prettyunits purrr rlang rsample tibble tidyr tune vctrs withr workflows]; }; + workflowsets = derive2 { name="workflowsets"; version="1.0.1"; sha256="1rv82lx1vmhjqlim7y5vpfsa7mb6msvkhiz17hxr5k9244ykmbhi"; depends=[cli dplyr generics ggplot2 glue hardhat lifecycle parsnip pillar prettyunits purrr rlang rsample tibble tidyr tune vctrs withr workflows]; }; workloopR = derive2 { name="workloopR"; version="1.1.4"; sha256="1gynlvmqxyibql5j3db9dwvc0jsc9jqzpy3d3gp43d5lcl11mcmq"; depends=[pracma signal]; }; worldfootballR = derive2 { name="worldfootballR"; version="0.6.2"; sha256="1s11qa30x2an8ndjahnx3wxbwf51xdwfqs42qw14wh83m35q2zn2"; depends=[cli curl dplyr glue httr janitor jsonlite lubridate magrittr progress purrr qdapRegex readr rlang rstudioapi rvest stringi stringr tibble tidyr tidyselect withr xml2]; }; worldmet = derive2 { name="worldmet"; version="0.9.7"; sha256="00kgaq5k85wbdj5kj3m1npfgfndhk1z9i1jjal2bc0612cajb44g"; depends=[doParallel dplyr foreach leaflet magrittr openair purrr readr tibble tidyr]; }; worldriskpollr = derive2 { name="worldriskpollr"; version="0.7.4"; sha256="1m3apmdf0ksih7yq9bp5nkyyyxkp6hdw3jjx071df83c4iv8abm9"; depends=[curl dplyr httr janitor labelled magrittr rlang sjlabelled tidyr]; }; - worms = derive2 { name="worms"; version="0.2.2"; sha256="183chjdi5qvsmdznvc9igcxaz769a37rwh5nzgvf5zf012a85wir"; depends=[httr plyr]; }; worrms = derive2 { name="worrms"; version="0.4.2"; sha256="1gpbyplfpcrapmci8axarrjjijsgh2dmhnsn79g1lhrafvm2ichs"; depends=[crul data_table jsonlite tibble]; }; worrrd = derive2 { name="worrrd"; version="0.1.0"; sha256="1czzm30xwssjrhw7kqw23d2s03v9lbwa0crld9qf9q80h5zc0kxi"; depends=[cowplot dplyr ggfittext ggplot2 ggtext glue magrittr purrr stringr tibble yaml]; }; wosr = derive2 { name="wosr"; version="0.3.0"; sha256="0fl9mizrjg3r7n7gslsxgaw3k2v63scqmvnv6341q8sq7018hzln"; depends=[httr jsonlite pbapply xml2]; }; wowa = derive2 { name="wowa"; version="1.0.2"; sha256="0i677bzgd9qx57x7n7qsaqpacgpap2d0n8gq1lc9hsmg13bs2v8f"; depends=[Rcpp]; }; + woylier = derive2 { name="woylier"; version="0.0.5"; sha256="1xa2qdkkqnd6c98a15rfsa3m8jil7gipr4mann3dhkf0zl59g0a4"; depends=[dplyr geozoo tibble tourr]; }; wpa = derive2 { name="wpa"; version="1.8.1"; sha256="1r9b9w208j2czkjv0z9gi052bcb92psxl42sj0kahhya732mw1yk"; depends=[data_table dplyr DT ggplot2 ggraph ggrepel ggwordcloud htmltools igraph magrittr markdown networkD3 proxy purrr reshape2 rmarkdown scales tidyr tidyselect tidytext]; }; wpp2008 = derive2 { name="wpp2008"; version="1.0-1"; sha256="0gd3vjw1fpzhp3qlf1jpc24f76i0pxsjs5pb1v3k2si6df7q4msd"; depends=[]; }; wpp2010 = derive2 { name="wpp2010"; version="1.2-0"; sha256="1h87r1cn4lnx80dprvawsyzfkriscqjgr27gvv7n19wvsx8qd57k"; depends=[]; }; @@ -19177,12 +19408,13 @@ in with self; { wql = derive2 { name="wql"; version="1.0.0"; sha256="1s702gvwx49wky2ylh8q5h1vmh6sls2pq69w6jcijh1qs587dngs"; depends=[ggplot2 reshape2 zoo]; }; wqs = derive2 { name="wqs"; version="0.0.1"; sha256="14qaa9g9v4nqrv897laflib3wwhflyfaf9wpllmbi5xfv9223rcg"; depends=[glm2 Rsolnp]; }; wqspt = derive2 { name="wqspt"; version="1.0.1"; sha256="1xd588kw171djx7q21b2jjarhbzd4i0gx7ccv1j1wyl95yzq07ba"; depends=[cowplot extraDistr ggplot2 gWQS mvtnorm pbapply rlang viridis]; }; - wrGraph = derive2 { name="wrGraph"; version="1.3.2"; sha256="0l8a65p3hyk7ghdhgz3khiimn38c76j59k77w9k0rhm9mdwlq55c"; depends=[lattice RColorBrewer wrMisc]; }; + wrGraph = derive2 { name="wrGraph"; version="1.3.3"; sha256="1kj30qm1qqdss6rhnc4fkxr0759jqvgswvy3dydhfxksb2zl75rw"; depends=[lattice RColorBrewer wrMisc]; }; wrMisc = derive2 { name="wrMisc"; version="1.12.0"; sha256="15xarfqjlvlqkxsm9cgs2q50lkxmmxpmiyjs3hl7yqwzr13f1vk0"; depends=[MASS]; }; - wrProteo = derive2 { name="wrProteo"; version="1.8.0"; sha256="0646pz7kb63hfjyz9jl254i94v0g7fz7fcqxdcv4p02zsw5zq84y"; depends=[knitr limma wrMisc]; }; + wrProteo = derive2 { name="wrProteo"; version="1.9.0"; sha256="0xd4vpv6060wrqs0jz6bcfkwg74vd24y13j0z8y1lcgqdw3mfars"; depends=[knitr limma wrMisc]; }; wrTopDownFrag = derive2 { name="wrTopDownFrag"; version="1.0.2"; sha256="1rdg6rzjz2h514i3c8z89mvj2j3h1s7rr5fry2mq3xvrwrgd3738"; depends=[wrMisc wrProteo]; }; wrangle = derive2 { name="wrangle"; version="0.5.10"; sha256="135160r3hlzxkqh97nycp5ad9b6628f61k6mbm0s8rprxwmcslhq"; depends=[dplyr magrittr rlang tidyr]; }; wrappedtools = derive2 { name="wrappedtools"; version="0.9.1"; sha256="11jbqs49qd4lra96bzs7vz0lqi96dm8aq90mqphy59q72aqr0y11"; depends=[boot broom coin dplyr forcats ggplot2 glue kableExtra knitr lifecycle purrr rlang rlist stringr tibble tidyr]; }; + wrappr = derive2 { name="wrappr"; version="0.1.0"; sha256="0n60var32fyk40mgk6crq565qcpif8cbgmqkqkl0a2ip1l0vrs30"; depends=[]; }; wrapr = derive2 { name="wrapr"; version="2.0.9"; sha256="1swgf10vg9sh29mn4gsia1rjln47lrqsv765yl19hlpk85qwhsk4"; depends=[]; }; wrassp = derive2 { name="wrassp"; version="1.0.4"; sha256="1fapl5cbza3zj2s6x9c55jvy7aj9w1iq30j0519nnj7hc7sf0f1s"; depends=[tibble]; }; write_snns = derive2 { name="write.snns"; version="0.0-4.2"; sha256="0sxg7z8rnh4lssbivkrfxldv4ivy37wkndzzndpbvq2gbvbjnp4l"; depends=[]; }; @@ -19208,7 +19440,7 @@ in with self; { x13binary = derive2 { name="x13binary"; version="1.1.57-3"; sha256="0sp0mwjxpaxlhfv94zb8n9grsq9ssp308c55q8ipkxn116d58ldm"; depends=[]; }; x3ptools = derive2 { name="x3ptools"; version="0.0.3"; sha256="04j40nkwlsaga6kp60rf1grk76dw2i1sqivfm2sj017n0v6mj017"; depends=[assertthat digest dplyr MASS png pracma readr rgl xml2 zoo]; }; xLLiM = derive2 { name="xLLiM"; version="2.2"; sha256="0gmy3jy1nf0fixgwcgfhrwcd85ran5ic7srzcx46akad828a4znq"; depends=[abind capushe corpcor e1071 glmnet igraph MASS Matrix mda progress randomForest]; }; - xQTLbiolinks = derive2 { name="xQTLbiolinks"; version="1.2.2"; sha256="1gsjka4sy7cr852217sbf2v63yfg7gs94q9cvvhbl67l83r06l2c"; depends=[BiocGenerics cowplot curl data_table DBI GenomeInfoDb GenomicRanges ggplot2 ggrepel ggridges httr IRanges jsonlite PupillometryR RMySQL scales stringr SummarizedExperiment viridis]; }; + xQTLbiolinks = derive2 { name="xQTLbiolinks"; version="1.4.2"; sha256="0s2zar4zav9a3q2w5cn915mr2k7mcd570fjaw0yj6q89c74mlw82"; depends=[BiocGenerics cowplot curl data_table DBI GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel IRanges jsonlite RMySQL stringr SummarizedExperiment viridis]; }; xROI = derive2 { name="xROI"; version="0.9.20"; sha256="0xa12qsw5xbbfqyv60apr4f9gx7q6rad4ywayvw8l2zla2wnhq5h"; depends=[colourpicker data_table jpeg lubridate moments raster RCurl rgdal rjson shiny shinyjs sp stringr tiff]; }; xRing = derive2 { name="xRing"; version="0.1.1"; sha256="1k4yhqvmixnjvzbw1ymq4brwn9n71vqsqpqw33p79kn98n4fj7z0"; depends=[dplR imager tcltk2 tkRplotR]; }; xSub = derive2 { name="xSub"; version="3.0.2"; sha256="07mib63zbvffr4w8klpv017d13wvqy3mwrpssr0vydcj8475gjfx"; depends=[countrycode haven RCurl]; }; @@ -19219,10 +19451,10 @@ in with self; { xaringanthemer = derive2 { name="xaringanthemer"; version="0.4.2"; sha256="074lq9m61647ac7crjmpf8qjj4l60ps0ic4c4b83g47drar79v2z"; depends=[colorspace glue purrr whisker]; }; xbreed = derive2 { name="xbreed"; version="1.0.1.1"; sha256="032i04ginyf9dyabfkygnhrkq7lqdvvyw7s41vjimy2kvjrnkkkx"; depends=[BGLR]; }; xdcclarge = derive2 { name="xdcclarge"; version="0.1.0"; sha256="1j8wsidwmfjygqlwavxinv4bqc6rddy42jdmlknsjfrrs49yj8kn"; depends=[nlshrink Rcpp RcppArmadillo]; }; - xefun = derive2 { name="xefun"; version="0.1.3"; sha256="19qz68699xcj817f2l46a1pvyq981187d2zqqlmin93dns5mcqvi"; depends=[data_table]; }; + xefun = derive2 { name="xefun"; version="0.1.4"; sha256="18bps0a1qrcz8a6zvy4vpxklyh507pmsfky2jphfb9f58ccdkmih"; depends=[data_table]; }; xergm_common = derive2 { name="xergm.common"; version="1.7.8"; sha256="03mjpafwfkmyj5ba84jydap9rp0i602izjlbd511xbxcw6dx2k0b"; depends=[ergm network]; }; xesreadR = derive2 { name="xesreadR"; version="0.2.3"; sha256="1pvdx0mxg2f885bhy4hb3kqzcgva4q7hzzaipkfzyi5lnjdsbc81"; depends=[bupaR data_table dplyr lubridate purrr stringr tidyr XML xml2]; }; - xfun = derive2 { name="xfun"; version="0.38"; sha256="12n60c18rgg65qxnlp4sv6q9zryiz146844ayd28kipnjpwc4457"; depends=[]; }; + xfun = derive2 { name="xfun"; version="0.39"; sha256="1jan2ggfywm1g05zszyy8d492wj7vpy35682lrnlklrx4jxsmv6h"; depends=[]; }; xgb2sql = derive2 { name="xgb2sql"; version="0.1.2"; sha256="1gw5dw0ck5hip8mv347zaswrggk395bg2hgn02bvqs0d31jhmgvi"; depends=[data_table xgboost]; }; xgboost = derive2 { name="xgboost"; version="1.7.5.1"; sha256="1g35r6qh4ivgbbvsdysiyy4c9gh396k3wdwz7scfb13g40zq7h2f"; depends=[data_table jsonlite Matrix]; }; xgxr = derive2 { name="xgxr"; version="1.1.2"; sha256="0mmnh6zab7qllbfpl3vn5sd7hcznm83v5rxi1pw5zv96ax0ikagv"; depends=[assertthat binom Deriv DescTools dplyr ggplot2 glue gtable Hmisc labeling magrittr minpack_lm pander png RCurl readr scales stringr tibble]; }; @@ -19235,7 +19467,7 @@ in with self; { xlsxjars = derive2 { name="xlsxjars"; version="0.6.1"; sha256="1rka5smm7yqnhhlblpihhciydfap4i6kjaa4a7isdg7qjmzm3h9p"; depends=[rJava]; }; xlutils3 = derive2 { name="xlutils3"; version="0.1.0"; sha256="1cxishi62bd36zlsy5qhzix1p68akdf9kpjg9gfm9aqpcijzccb9"; depends=[magrittr readxl]; }; xmeta = derive2 { name="xmeta"; version="1.3.1"; sha256="1jl83qpf01h7smgpdkbv434gyimxknk423ri0yy09bxr5smbq7ch"; depends=[aod glmmML MASS metafor mvmeta numDeriv plotrix]; }; - xml2 = derive2 { name="xml2"; version="1.3.3"; sha256="138w7hb487al9cbahmnk5rhi23k8a9g7nk7s5dyxd3k1646rqknb"; depends=[]; }; + xml2 = derive2 { name="xml2"; version="1.3.4"; sha256="0c1h7fvkrcqcgnky6hhp9ysaraxhqdqjvsdlq0450fk4ishv22rl"; depends=[]; }; xml2relational = derive2 { name="xml2relational"; version="0.1.1"; sha256="05nykrmwqa43f9h6wpk6m1spmqr22r0ffiki4hp3jsyw8k7i78hv"; depends=[fs lubridate rlang stringr tidyr xml2]; }; xmlconvert = derive2 { name="xmlconvert"; version="0.1.2"; sha256="0vj5ar61i94if141jzqk7jq091mb2xwzl0x86dj7ddk8y3c1w9dv"; depends=[httr lubridate readr stringr tibble xml2]; }; xmlparsedata = derive2 { name="xmlparsedata"; version="1.0.5"; sha256="1c6bnz3ng1qw7sfip8wq3a4dn36a4d6rbja0sadn0a4pbsmk8q3n"; depends=[]; }; @@ -19250,7 +19482,7 @@ in with self; { xplain = derive2 { name="xplain"; version="0.2.2"; sha256="152a83ckmhns6yniy87mmjva5bkv5x3phv63l1kkcmrr9bclfgz0"; depends=[httr RCurl readr XML]; }; xplorerr = derive2 { name="xplorerr"; version="0.1.2"; sha256="0sca6nngjs6f51di4dgzx868p75bzas0msr0kgivavsv6rj5fz0r"; depends=[Rcpp shiny]; }; xportr = derive2 { name="xportr"; version="0.2.0"; sha256="0dfa666mimva5gzzi9rwsah7i4p4l0ycbkzqcb4mrad5j4sbdm1j"; depends=[cli dplyr glue haven janitor magrittr purrr readr rlang stringr tidyselect tm]; }; - xpose = derive2 { name="xpose"; version="0.4.15"; sha256="12zjrsy7gjwrw8zgsaqwfjvi7mdrcpf2m4v4sryc62ch1pa02gn8"; depends=[dplyr ggforce ggplot2 purrr readr rlang stringr tibble tidyr vpc]; }; + xpose = derive2 { name="xpose"; version="0.4.16"; sha256="1lxfrmr051b5kzr7763lny3hwf4g6hhlqfib48yf8xhr587jwvv0"; depends=[dplyr ggforce ggplot2 purrr readr rlang stringr tibble tidyr vpc]; }; xpose_nlmixr2 = derive2 { name="xpose.nlmixr2"; version="0.4.0"; sha256="0scq6brd7sn1ybmacxlpdlmkwxbn9sc2gpzw6438fwfjss6sza8s"; depends=[crayon dplyr ggplot2 magrittr nlmixr2est rlang stringr tibble tidyr vpc xpose]; }; xpose4 = derive2 { name="xpose4"; version="4.7.2"; sha256="149ridxvbbkyxlnyhvw31gh2574cdycrrn89qwzvi4b5wb0p7psi"; depends=[dplyr gam Hmisc lattice lazyeval readr survival tibble]; }; xray = derive2 { name="xray"; version="0.2"; sha256="1ibj92ljlj8a5rmbrci691yhpd4kwrfyl944nzl2dcbf58l01dzq"; depends=[dplyr foreach ggplot2 lubridate scales]; }; @@ -19263,7 +19495,7 @@ in with self; { xtensor = derive2 { name="xtensor"; version="0.14.1-0"; sha256="1qni98kxyaggb1ixmmj1hh1jmbz8rhji91nifgrjxc1wsvmvswh0"; depends=[Rcpp]; }; xtermStyle = derive2 { name="xtermStyle"; version="3.0.5"; sha256="1q4qq8w4sgxbbb1x0i4k5xndvwisvjszg830wspwb37wigxz8xvz"; depends=[]; }; xtranat = derive2 { name="xtranat"; version="0.1.0"; sha256="1gv0kc1gj305iwwhv7wrfrh45rqwaks696q6q39a55m2vxw11xl1"; depends=[]; }; - xts = derive2 { name="xts"; version="0.13.0"; sha256="0x4nxyp61sgh5zva39fh0f9hpj5ax01a17gv9ma6mi9yihflv3hq"; depends=[zoo]; }; + xts = derive2 { name="xts"; version="0.13.1"; sha256="0pc23na5lrzfchd4i22p035y1krjpddi0iw6i78lhbhns330ff9c"; depends=[zoo]; }; xutils = derive2 { name="xutils"; version="0.0.2"; sha256="1h07gs8pj7hn64r35ld1j1zakc243aiiwdrz92viqrg7z75czdzl"; depends=[Rcpp]; }; xwf = derive2 { name="xwf"; version="0.2-3"; sha256="1byj6vjk2abm9j919107xsa3nd40zbsvxaldvv4ml3c47k1fg3kc"; depends=[mgcv]; }; xxIRT = derive2 { name="xxIRT"; version="2.1.2"; sha256="0b8yv8ixmcjiv9hlvpfdknx815smy7df7f2ixifnvhxxafgf1fwq"; depends=[ggplot2 glpkAPI lpSolveAPI reshape2]; }; @@ -19273,10 +19505,9 @@ in with self; { yager = derive2 { name="yager"; version="0.1.1"; sha256="178ypdr3f0w9rb4ci8q2hshr62b7993m8q6zxc4pf0msq175n1ml"; depends=[lhs MLmetrics randtoolbox]; }; yahoofinancer = derive2 { name="yahoofinancer"; version="0.1.0"; sha256="1zr5hpafqzx6h9qfx7b1ji19kzkh19gz1h1x37rx1256anrc07zq"; depends=[httr jsonlite lubridate magrittr purrr R6 stringr]; }; yaml = derive2 { name="yaml"; version="2.3.7"; sha256="1aw0cvaqw8a0d1r3cplj5kiabkcyz8fghcpi0ax8mi7rw0cv436j"; depends=[]; }; - yamlet = derive2 { name="yamlet"; version="0.10.20"; sha256="1s1grrlyhxx8b1anafa7ryipk8jzbg2nhlf0xd8m3sn6bnq8m7c8"; depends=[csv dplyr encode ggplot2 pillar rlang scales spork tidyr units vctrs xtable yaml]; }; + yamlet = derive2 { name="yamlet"; version="0.10.21"; sha256="0s5p0rr6dnfh805h2s87v2s164vw35bg2mvq5vbb9b0g82cc9hb8"; depends=[csv dplyr encode ggplot2 pillar rlang scales spork tidyr units vctrs xtable yaml]; }; yamlme = derive2 { name="yamlme"; version="0.1.2"; sha256="1019nzchqif4r3c7ywq23bjx711g359q44s8jy0rxyv03rij6xh9"; depends=[rmarkdown yaml]; }; - yap = derive2 { name="yap"; version="0.1.1"; sha256="0m126vpfvlmwkpy14i9wbzr51hb8r6s3wcdm3vp9izfccpnxfxl2"; depends=[lhs randtoolbox]; }; - yardstick = derive2 { name="yardstick"; version="1.1.0"; sha256="0bcirq9mp7c6kwx563nnsd4lk33xk0rfaakj1xj5r8pzmrcgbikj"; depends=[dplyr generics hardhat rlang tidyselect vctrs]; }; + yardstick = derive2 { name="yardstick"; version="1.2.0"; sha256="0aqxnxhyy0bdfm09b7jpzba6c4g5r6l4h48q2xfxsm353nni7wgb"; depends=[cli dplyr generics hardhat lifecycle rlang tibble tidyselect vctrs]; }; yarr = derive2 { name="yarr"; version="0.1.2"; sha256="16q109jrydckz7s1rkmr2sh8q92cgr1c534fvpbh3h0bc3fvvf8g"; depends=[]; }; yarrr = derive2 { name="yarrr"; version="0.1.5"; sha256="1258bj7x4icaxfabnnd3fgwydnqbzxkih7zw0sdlwdax3q8fw5c5"; depends=[BayesFactor circlize jpeg]; }; yasp = derive2 { name="yasp"; version="0.2.0"; sha256="0fza8h9y1wmarsmjcvw4r970d6j4ii795pd2h4xh9nlsirv50adi"; depends=[]; }; @@ -19290,9 +19521,8 @@ in with self; { ymd = derive2 { name="ymd"; version="0.0.1"; sha256="02cd7y28s406yzvax2d47xwrsqyd8mhhb879ywjqfj6lvwf3jvkd"; depends=[]; }; ymlthis = derive2 { name="ymlthis"; version="0.1.7"; sha256="127rh8mfff0ii6wcd7iaaz60vlkynjlrs188wwcap8l2qgv67idy"; depends=[crayon fs glue magrittr purrr rlang rmarkdown rstudioapi stringr usethis whoami withr yaml]; }; ympes = derive2 { name="ympes"; version="0.4.0"; sha256="1vxyq148m7kaj9f4lgr5jlnd31rn1wh8cbjn0j2s22kip1p57aaf"; depends=[]; }; - yorkr = derive2 { name="yorkr"; version="0.0.39"; sha256="1i50krpv88jl5bjy6ij456nsh79s80gljd18jmpy27a3h28ncfcb"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; + yorkr = derive2 { name="yorkr"; version="0.0.41"; sha256="0ypm7di343wpsg7x85bx4044bhf2fxp638yyy0rvj23x11z0ra8v"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; youngSwimmers = derive2 { name="youngSwimmers"; version="0.0.1"; sha256="02ih66ad8v5qkgyszllkh9319sfd6fqcci4zrvbjr1dfwlwa2ri1"; depends=[data_table lifecycle]; }; - youtubecaption = derive2 { name="youtubecaption"; version="1.0.0"; sha256="15cafl7b03xrql2y2ayy6ajf6v764wym3xqs4pbzlf6ncy8qwl5r"; depends=[dplyr magrittr purrr reticulate stringr tibble writexl]; }; ypr = derive2 { name="ypr"; version="0.6.0"; sha256="0hn4zbg270p8yg4wxcszwfc0vsf2mb21lkqi1745000rh5cbz8sa"; depends=[chk ggplot2 lifecycle purrr tibble tidyplus yesno]; }; ypssc = derive2 { name="ypssc"; version="1.1.0"; sha256="0fpph19amj1cafcbh5k6s75pi7nahzgfvnsbs9i5644gv43iavbj"; depends=[dplyr eulerr Peptides readxl spelling stringr svDialogs]; }; yuima = derive2 { name="yuima"; version="1.15.22"; sha256="04qhb8w0f5ix4f99lsfcnfkx0xpwn12rfdvkg1fk484n0l7gli0r"; depends=[boot calculus coda cubature expm glassoFast mvtnorm Rcpp RcppArmadillo zoo]; }; @@ -19302,8 +19532,9 @@ in with self; { zCompositions = derive2 { name="zCompositions"; version="1.4.0-1"; sha256="1rrhja9iaq123r2gqw1bzrn1ri0s3z4wzq8p0sfcr1yb6pv13vik"; depends=[MASS NADA truncnorm]; }; zTree = derive2 { name="zTree"; version="1.0.7"; sha256="005zk6wpchpss6865ki35yawgf668pn70163ah97rnfkhfaswm6y"; depends=[plyr]; }; zalpha = derive2 { name="zalpha"; version="0.3.0"; sha256="04hi5lxgcqzmkbqppp5fv8x7wdgap3bgr8b8pv4pvavzh73jlmxs"; depends=[]; }; + zctaCrosswalk = derive2 { name="zctaCrosswalk"; version="2.0.0"; sha256="14yda45nqn9ywb7zpwp4kmjziglj0qjgm02lmi8ndvc5wi2r1ma7"; depends=[dplyr readr rlang stringr]; }; zcurve = derive2 { name="zcurve"; version="2.3.0"; sha256="1bgc2inc5wmimbhmxqlyg02hcf3n06z2fx26dnqr9baabmdgkpfa"; depends=[evmix nleqslv Rcpp Rdpack]; }; - zdeskR = derive2 { name="zdeskR"; version="0.2.0"; sha256="0kbdkxly20ai3nfwwqj04gncbg1g3sh9gy323hsif919wpid8qzg"; depends=[dplyr httr jsonlite magrittr plyr purrr tidyr]; }; + zdeskR = derive2 { name="zdeskR"; version="0.3.0"; sha256="0a22yhsvzc0z4xbj7cfy33gf73zi1a8ryp0x4na3kximwiiw6v09"; depends=[dplyr httr jsonlite magrittr plyr purrr tidyr]; }; zeallot = derive2 { name="zeallot"; version="0.1.0"; sha256="1sd1igcfnv27pa3bqxlbyxchi562h7grnjg1l7wxx3bwr49i57s3"; depends=[]; }; zebu = derive2 { name="zebu"; version="0.2.0.0"; sha256="0nd44j2zxsagg9sav3lm8gzbyq8cdk1kfgbn503hb3a58kcqyg0d"; depends=[data_table ggplot2 Rcpp reshape2]; }; zeitgebr = derive2 { name="zeitgebr"; version="0.3.5"; sha256="1h2zx3ah1xdyyag40ragrv7gvpnlzqmappbnjp971dn9khqdxfqs"; depends=[behavr data_table lomb pracma WaveletComp]; }; @@ -19315,7 +19546,7 @@ in with self; { zetadiv = derive2 { name="zetadiv"; version="1.2.1"; sha256="0m147z864g2pca28gbna1bb7jqr2f74x15fj8v8hhs3a2lr8lh37"; depends=[car geodist glm2 mgcv nnls scam vegan]; }; zfit = derive2 { name="zfit"; version="0.3.0"; sha256="0qzfl1fvs3rw5fnf27d26arbi70bj2cgbg7b8jbnka2vb2c20kwm"; depends=[]; }; zic = derive2 { name="zic"; version="0.9.1"; sha256="1vd64ljigf6iwgzlgdxgj65nlwir176h7ddznddpaz2abh6n6zwp"; depends=[coda Rcpp RcppArmadillo]; }; - zip = derive2 { name="zip"; version="2.2.2"; sha256="194f19649jqw8wa2bd1kj3873hqnqxsrbqdwnvlzngi8pcixwv71"; depends=[]; }; + zip = derive2 { name="zip"; version="2.3.0"; sha256="0hs5yz324jpiy2h0jkrlcb2h9ks65mcc2vpf68briy9aj92aisrk"; depends=[]; }; zipR = derive2 { name="zipR"; version="0.1.1"; sha256="1aaw3dslhsw3zgxvkc1v60vsk44x64i4qmjwx0gq4f7dad1rbiqp"; depends=[]; }; zipangu = derive2 { name="zipangu"; version="0.3.2"; sha256="0l5jhv0xl0rh7z546zn2p3gaci1v7d9d3ha6040kixclkmhb5dp6"; depends=[arabic2kansuji dplyr lifecycle lubridate magrittr memoise purrr rlang stringi stringr tibble]; }; zipcodeR = derive2 { name="zipcodeR"; version="0.3.5"; sha256="1fmjqfhxd0lgsn6l5jvi3qzhbq9865xcps3jm9iy72jx7jxr59lk"; depends=[curl DBI dplyr httr jsonlite raster rlang RSQLite stringr tidycensus tidyr]; }; @@ -19325,18 +19556,19 @@ in with self; { zlog = derive2 { name="zlog"; version="1.0.2"; sha256="0fi9aqrmikdg5ibwhn82kslj4lxih03vm27jmi14m73h09yy4in5"; depends=[]; }; zmisc = derive2 { name="zmisc"; version="0.2.2"; sha256="154qm0f2ds40gwxqv30nf2px26clkf2lw2y51ak12gxpj08b6mix"; depends=[]; }; zoeppritz = derive2 { name="zoeppritz"; version="1.0-8"; sha256="1711szx9zz17q6pfinyzlyrw7m9772c8ywlixqar2l165bkjalgm"; depends=[]; }; - zoib = derive2 { name="zoib"; version="1.5.5"; sha256="0inm7f2pc68ksqxvq12xp9jc99vj7ydylvs24ip12nksbj5k1n8f"; depends=[abind coda Formula rjags]; }; + zoib = derive2 { name="zoib"; version="1.6"; sha256="1px4jjjpn6ikngzlxz1i6fgld9cy5lv6nqn1bjin4q6sqqixyx2j"; depends=[abind coda Formula rjags]; }; zoid = derive2 { name="zoid"; version="1.1.0"; sha256="0x37250fq3a3jbl1a2p8zkbacwzhc1xylk1nnfmx2fcgjif40lmq"; depends=[BH compositions gtools Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; zoltr = derive2 { name="zoltr"; version="0.5.1"; sha256="12zh7y3pwidclscgvd0b0iaqq9j5y8mc8xd6pz4vs0jy5qs3ahar"; depends=[base64url dplyr httr jsonlite magrittr MMWRweek mockery readr rlang webmockr]; }; zonator = derive2 { name="zonator"; version="0.6.0"; sha256="1plxchpd4ypp36phl13pi9yvlrqi3lk83lv5rldrhdqynhcgfw2k"; depends=[ggplot2 raster RColorBrewer reshape2 rgdal]; }; zonebuilder = derive2 { name="zonebuilder"; version="0.0.2"; sha256="0mxf3dz0d6bi5wwjilqivdxhy5ypnq5svky8zygha0clv45l4dmn"; depends=[RColorBrewer sf]; }; - zoo = derive2 { name="zoo"; version="1.8-11"; sha256="19cw09bhwj2qyd72765ym1cm2wmhh801ccif889nzq5gfpw513l4"; depends=[lattice]; }; + zonohedra = derive2 { name="zonohedra"; version="0.2-1"; sha256="03sbnvyhaq1ldg07g1499n7drvwcgmmwblmc3ccrapwlwaqdsl6b"; depends=[logger]; }; + zoo = derive2 { name="zoo"; version="1.8-12"; sha256="1f1g7f362sidh99n2pcgnj8iwsn7hnjgpdnkrqml5qzrd0k8dhz6"; depends=[lattice]; }; zooaRch = derive2 { name="zooaRch"; version="1.2"; sha256="0grc378xppv0303sf4flfqz5002vq5a23nzbq4bsff41rww7dihc"; depends=[ggplot2]; }; zooimage = derive2 { name="zooimage"; version="5.5.2"; sha256="0ck8w0zb9l1n9xvjwqshq9q9l8pigy3yslq2hnfbgcwk17kk9mp8"; depends=[digest DT filehash jpeg MASS mda mlearning png shiny svDialogs svMisc tiff]; }; zoolog = derive2 { name="zoolog"; version="1.1.0"; sha256="06g44gjk9w73996n4h1a2q8kcd6q2mvm1vhx0iq0785gvrz18pj9"; depends=[Rdpack stringi]; }; zoom = derive2 { name="zoom"; version="2.0.6"; sha256="05ikad4j1qi5y8mn77n9bw7d6ic3api9d7mbcn855w8xcc69ja4q"; depends=[]; }; zoomGroupStats = derive2 { name="zoomGroupStats"; version="0.1.0"; sha256="0gndiq92cy6gi7f833hdjvqii3cn83wz5rjvygcvjl3dw4pwv966"; depends=[data_table dplyr lubridate magick openxlsx paws pbapply stringr syuzhet]; }; - zoomr = derive2 { name="zoomr"; version="0.1.1"; sha256="19nxpa4qlln6ical269dfwq6axln508fvz78qgaa39dxsfg4m3f7"; depends=[dplyr glue httr janitor jsonlite magrittr purrr rlang tidyr tidyselect]; }; + zoomr = derive2 { name="zoomr"; version="0.2.0"; sha256="0i0b4v204p9cpgpw3dn5b29hvmf7r2k7swld0n9iy77asmf5gnvs"; depends=[dplyr glue httr janitor jsonlite magrittr purrr rlang tidyr tidyselect]; }; zoon = derive2 { name="zoon"; version="0.6.5"; sha256="02y29vr2yn8al69km8faiqrwjrc1r3hsvw3dg8lwjr65cxw1krip"; depends=[dismo plyr randomForest raster RCurl rfigshare rgdal roxygen2 rworldmap sp testthat]; }; zscorer = derive2 { name="zscorer"; version="0.3.1"; sha256="0aijhs0fyird5gq68x4dxchb02mxa7ijk10k9zjhngghxbjj7iqn"; depends=[shiny]; }; ztable = derive2 { name="ztable"; version="0.2.3"; sha256="1ps7ix0hc84s0p0ra6bkjxky3cffs1rvdcagqzj78lbdq22dk5j8"; depends=[flextable magrittr officer RColorBrewer rstudioapi scales stringr]; }; @@ -19345,11 +19577,13 @@ in with self; { zyp = derive2 { name="zyp"; version="0.11-1"; sha256="0gqds43ivbsi4770nxj5sf4mp51m410svnap0v1rh8vlk3gkb3l9"; depends=[Kendall]; }; zzlite = derive2 { name="zzlite"; version="0.1.2"; sha256="0vi1slx2s4r5zf82lazqv0c3m12xq73wlgsbz6af4y00h0bkr3ps"; depends=[httr jsonlite]; }; ACD = derive2 { name="ACD"; version="1.5.3"; sha256="1a67bi3hklq8nlc50r0qnyr4k7m9kpvijy8sqqpm54by5hsysfd6"; depends=[]; broken = true; }; + ACDC = derive2 { name="ACDC"; version="1.0.0"; sha256="11nlg6pcmfa8pl1f5fxxcig1z1j74yizllh5y9rcdbdfzcasvnzn"; depends=[colorspace deSolve dplyr ggplot2 latex2exp magrittr patchwork tibble tidyr]; broken = true; }; ACSNMineR = derive2 { name="ACSNMineR"; version="0.16.8.25"; sha256="0gh604s8qall6zfjlwcg2ilxjvz08dplf9k5g47idhv43scm748l"; depends=[ggplot2 gridExtra scales]; broken = true; }; AGSDest = derive2 { name="AGSDest"; version="2.3.4"; sha256="140bqzgaagdyzgxsn998jw2sxak448i47xyacn2psfnps440gfjr"; depends=[ldbounds]; broken = true; }; AGread = derive2 { name="AGread"; version="1.3.2"; sha256="1l7h6hpf28hpff50s7qaj9cwiqki98wiz2a7z773d7qzm28074gy"; depends=[anytime data_table DBI DescTools dplyr lubridate magrittr PAutilities R_utils Rcpp read_gt3x readr reshape2 rlang RSQLite stringr]; broken = true; }; AIG = derive2 { name="AIG"; version="0.1.9"; sha256="1jnnfmcwxcv4fsdcz7jb2lgczxdwrq3qxg2bhsh1610iwz4gzii7"; depends=[dplyr magrittr mgcv rgl]; broken = true; }; AMAP_Seq = derive2 { name="AMAP.Seq"; version="1.0"; sha256="0z0rrzps6rm58k4m1ybg77s3w05m5zfya4x8ril78ksxsjwi3636"; depends=[]; broken = true; }; + AMAPVox = derive2 { name="AMAPVox"; version="1.0.0"; sha256="0pdcsdfflgss9zrc1biiwg7lrvr10irmi2q8zng6yaccnlw4v074"; depends=[curl data_table dplyr jsonlite rappdirs stringr]; broken = true; }; AMGET = derive2 { name="AMGET"; version="1.0"; sha256="18wdzzg5wr7akbd1iasa4mvmy44fb2n5gpghwcrx80knnicy3dxq"; depends=[]; broken = true; }; AMOEBA = derive2 { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[rlecuyer snowfall spdep]; broken = true; }; AMORE = derive2 { name="AMORE"; version="0.2-16"; sha256="0vw6hhykg1r6xxja6d4zb2y00x7pfkmhcq9xkidz8p4arinb7xnl"; depends=[]; broken = true; }; @@ -19357,12 +19591,15 @@ in with self; { APAtree = derive2 { name="APAtree"; version="1.0.1"; sha256="0vhvx2xp62avyq405jqn4i3z8awlifcs1lb527brxxhybrhnk4rv"; depends=[BH FD lwgeom raster Rcpp sf units]; broken = true; }; APML = derive2 { name="APML"; version="0.0.5"; sha256="1md9vryq2qf4cx3jrgh7p2j87qc8iil1cszw0vay5ylzaw4bz1hl"; depends=[dplyr fastDummies ggplot2 h2o performanceEstimation pROC survival]; broken = true; }; APSIMBatch = derive2 { name="APSIMBatch"; version="0.1.0.2374"; sha256="0j44ijq1v1k60lka9nmw8m1jfjw7pidny9bvswqy5v82gzmwl29d"; depends=[]; broken = true; }; + ARTP2 = derive2 { name="ARTP2"; version="0.9.45"; sha256="12nqxry2jkl1n07rbms38mrnp39cn00d0h272d9f1z5x883flv62"; depends=[data_table Formula]; broken = true; }; ASPBay = derive2 { name="ASPBay"; version="1.2"; sha256="0b1qpyvmj7z10ixrmdxp42bj9s72c1l9rihzmv9p58f12a5aznjz"; depends=[hexbin Rcpp RcppArmadillo]; broken = true; }; ASSOCShiny = derive2 { name="ASSOCShiny"; version="0.1.0"; sha256="1g1ba9d5ywd3gbwjb36xnms8l15dg1vwc6r0nsb5adhpb602xsw1"; depends=[arules arulesViz dplyr plotly rmarkdown shiny shinyMatrix]; broken = true; }; ATE = derive2 { name="ATE"; version="0.2.0"; sha256="1i46ivb7q61kq11z9v1rlnwad914nsdjcz9bagqx17vjk160mc0a"; depends=[]; broken = true; }; ATmet = derive2 { name="ATmet"; version="1.2.1"; sha256="17lzb4qnxgvlwy5zaz250mb0c4ayk509700k8mj8zf4dgv51kxa3"; depends=[DiceDesign lhs metRology msm sensitivity]; broken = true; }; AUCRF = derive2 { name="AUCRF"; version="1.1"; sha256="00d7jcg2dyvf7sc9w7vxxd85m7nsbcmfqsavrv236vxfpfc9yn7i"; depends=[randomForest]; broken = true; }; AWAPer = derive2 { name="AWAPer"; version="0.1.46"; sha256="02n662wvd8qwshfmj9qfff730qs6ls82hkdsphw05jj6llddi4k5"; depends=[chron Evapotranspiration maptools ncdf4 raster sp xts zoo]; broken = true; }; + AWR_Athena = derive2 { name="AWR.Athena"; version="2.0.7-0"; sha256="1j9bqhyk0jzry4g379ml65gwxlszn7pjif1dywgns98jbry8mavh"; depends=[rJava RJDBC]; broken = true; }; + ActiSleep = derive2 { name="ActiSleep"; version="0.2.1"; sha256="0nkfddfv0g1bvsg6811lrmy0cx7knmi225snyp22bh9ly9fnlqp8"; depends=[accelerometry DBI dplyr lazyeval lubridate RSQLite stringr tibble]; broken = true; }; AdapEnetClass = derive2 { name="AdapEnetClass"; version="1.2"; sha256="01k3mj4g1ckbng7wkzzn9h0k9yf01cpnnkly0sjda574c5jhj0rc"; depends=[glmnet imputeYn lars quadprog]; broken = true; }; AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.69"; sha256="0mclsnsxjyg1q7p7654gjsczzdzpa6avx3b9jpmdb0n63zdgmwy3"; depends=[MASS mgcv nlme SemiPar]; broken = true; }; AdjBQR = derive2 { name="AdjBQR"; version="1.0"; sha256="14437pyz9v09ighwqvy1lcw0vfp2gaqzs9nzrb1gkfbb8ndzjw7k"; depends=[coda MHadaptive quantreg survival]; broken = true; }; @@ -19401,6 +19638,7 @@ in with self; { BSGS = derive2 { name="BSGS"; version="2.0"; sha256="08m8g4zbsp55msqbic4f17lcry07mdn0f5a61zdcy2msn2ihzzf9"; depends=[batchmeans MASS plyr pscl]; broken = true; }; BaBooN = derive2 { name="BaBooN"; version="0.2-0"; sha256="145q2kabjks2ql3m48sfjis5y35l8rcqnr5s176viv9yhfafn351"; depends=[coda Hmisc MASS nnet Rcpp RcppArmadillo]; broken = true; }; BaPreStoPro = derive2 { name="BaPreStoPro"; version="0.1"; sha256="0zyyyrr5h8dhjsmgaii8jmb8ignvixpc9nzbfishw9yymjswvm57"; depends=[]; broken = true; }; + BaSTA = derive2 { name="BaSTA"; version="1.9.5"; sha256="09wvfg44g9j3gq9arkm2ajm8l4y7gna4fh49ihvmjzqdvsl6gkq6"; depends=[snowfall]; broken = true; }; BacArena = derive2 { name="BacArena"; version="1.8.2"; sha256="1fv3hmr8frqgdl22cvp5w5089ppmqzw42llw2ls054dvsdadlqm9"; depends=[deSolve ggplot2 glpkAPI igraph Matrix plyr R_matlab Rcpp RcppArmadillo RcppEigen ReacTran reshape2 stringr sybil]; broken = true; }; BayHaz = derive2 { name="BayHaz"; version="0.1-3"; sha256="08ilghlkgyma5758yw7mdgqycqcillqmx73knzzdlg2kzc77dvg6"; depends=[]; broken = true; }; BaySIC = derive2 { name="BaySIC"; version="1.0"; sha256="023ji6q1nvksmhp3ny8ad39xxccc0a1rv9iaiaagwavgzzc0pjd9"; depends=[fields poibin rjags]; broken = true; }; @@ -19411,6 +19649,7 @@ in with self; { BayesianAnimalTracker = derive2 { name="BayesianAnimalTracker"; version="1.2"; sha256="1pgjijqznfdpvw296h5vksnxgspxs7qhy6s84ww7abnlhg59bz5s"; depends=[TrackReconstruction]; broken = true; }; BayesianFROC = derive2 { name="BayesianFROC"; version="1.0.0"; sha256="03f0cj528cb4rhkzs4vw4k1wq4gxb3zq121pamjwhbal93b8mz7a"; depends=[bridgesampling car crayon fastDummies ggplot2 knitr pracma Rcpp rhandsontable rstan shiny shinydashboard shinyjs shinythemes]; broken = true; }; BiOFI = derive2 { name="BiOFI"; version="0.1.0"; sha256="0dhqfv1z2r495wr4higpwm2mc1rjgimc9z5w89fshs78y9gj2mrp"; depends=[dplyr ggplot2 ggrepel Hmisc htmlwidgets igraph magrittr networkD3 ppcor tidyverse visNetwork]; broken = true; }; + BiTrinA = derive2 { name="BiTrinA"; version="1.3"; sha256="0sjq5a21vpsjs0ad0v8gsqlbk3n8virg1hzj0nvgm3h3xqhymh1d"; depends=[diptest]; broken = true; }; BigDataStatMeth = derive2 { name="BigDataStatMeth"; version="0.99.32"; sha256="0iz6pzlhkziwdwv80sy9zcxfvkxxjhqmgn7lk7lv1mkhywqkd9jk"; depends=[beachmat BH data_table Rcpp RcppEigen RcppParallel RCurl rhdf5 Rhdf5lib RSpectra]; broken = true; }; BigTSP = derive2 { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; broken = true; }; BinQuasi = derive2 { name="BinQuasi"; version="0.1-6"; sha256="0jf7zf3yqr2kgcm6h35234x2dqf65d2dzsh63b4q8m5l36r77k59"; depends=[BiocGenerics csaw edgeR GenomicAlignments GenomicRanges IRanges mgcv pracma quadprog RMySQL Rsamtools S4Vectors SummarizedExperiment]; broken = true; }; @@ -19432,6 +19671,7 @@ in with self; { CDSeq = derive2 { name="CDSeq"; version="1.0.8"; sha256="06pjp9hn9ziz4wgkaj0r0zzw69r7635j10rmnl331abc4mchpazy"; depends=[Biobase clue dirmult doParallel dplyr foreach ggplot2 ggpubr gplots iterators magrittr MASS Matrix matrixStats qlcMatrix Rcpp RcppArmadillo RcppThread rlang Seurat]; broken = true; }; CHCN = derive2 { name="CHCN"; version="1.5"; sha256="18n8f002w0p0l1s5mrrsyjddn10kdbb6b7jx1v9h1m81ifdbv0xb"; depends=[bitops RCurl]; broken = true; }; CIFsmry = derive2 { name="CIFsmry"; version="1.0.1.1"; sha256="1m2m2zvg9ghy3bm2sll7jp4xm2vw58kc5xaxd2c9k82771m3a4j0"; depends=[]; broken = true; }; + CINNA = derive2 { name="CINNA"; version="1.2.0"; sha256="0pijsr3ciqi9i5pi3ppc8zz573lzwly0mwglz2xdfkwmwy2bzdqi"; depends=[centiserve circlize corrplot dendextend factoextra FactoMineR GGally ggplot2 igraph intergraph network pheatmap plyr qdapTools Rtsne sna viridis]; broken = true; }; CISE = derive2 { name="CISE"; version="0.1.0"; sha256="10mbi4v8dfdc9ngnrrmxpng8fnig5m8nv7799jksbcf6pnj8yv51"; depends=[far gdata glmnet MASS Matrix rARPACK]; broken = true; }; CLSOCP = derive2 { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphjyzxmh6b6k23a8gcczycx6xdq4yhw"; depends=[Matrix]; broken = true; }; CMC = derive2 { name="CMC"; version="1.0"; sha256="1r9a5k79fyw01yiwxq02327hpn4l1v2lp0958jj9217wxmhn3pr5"; depends=[]; broken = true; }; @@ -19443,6 +19683,7 @@ in with self; { COSINE = derive2 { name="COSINE"; version="2.1"; sha256="10ypj849pmvhx117ph3k1jqa62nc4sdmv8665yahds7mh0ymhpjj"; depends=[genalg MASS]; broken = true; }; COUSCOus = derive2 { name="COUSCOus"; version="1.0.0"; sha256="1ykqi72v8v1b3g9qy6h34dvk5fynzf1rl2mby65p08axmaba5798"; depends=[bio3d matrixcalc]; broken = true; }; CRAC = derive2 { name="CRAC"; version="1.0"; sha256="0vnqmmmwakx5jnzqp20dng35p7rvmz3ypm2m7bs41m8nhh2wq1xa"; depends=[]; broken = true; }; + CSTools = derive2 { name="CSTools"; version="4.1.1"; sha256="1a05wv9isrlf7pzhychczvnpvsppnnriaz4jsm78ccg0m9y3wabj"; depends=[abind ClimProjDiags data_table easyVerification ggplot2 maps multiApply ncdf4 plyr qmap rainfarmr RColorBrewer reshape2 s2dv verification]; broken = true; }; CSUV = derive2 { name="CSUV"; version="0.1.1"; sha256="1gh8gxwnrg4j017c08xfhm57rwci24sqmxxx00k3d0mw6j0mbdvw"; depends=[caret doParallel DT futile_logger ggplot2 glmnet HDCI MASS ncvreg relaxo reshape2 shiny shinyjs]; broken = true; }; CTD = derive2 { name="CTD"; version="1.1.0"; sha256="0rc8i01r3fxld01qliybmbifgb5vb55dwk5arzgv95mrxsrbs4ml"; depends=[igraph]; broken = true; }; CVTuningCov = derive2 { name="CVTuningCov"; version="1.0"; sha256="1bwzis82lqwcqp2djy4bnd3vvjr47krlv3pdc5msh12wcs0xhs7n"; depends=[]; broken = true; }; @@ -19450,6 +19691,7 @@ in with self; { CVcalibration = derive2 { name="CVcalibration"; version="1.0-1"; sha256="0ca582fnysrldlzxc3pihsph9pvdgygdh7sfzgxvr5fc3z1jbjzb"; depends=[]; broken = true; }; CallEshotgun = derive2 { name="CallEshotgun"; version="0.2.0"; sha256="09xi0867vi0x244ahg9rrm2rr6f9x7fzrmlifb098akik2pvfn20"; depends=[reticulate]; broken = true; }; CateSelection = derive2 { name="CateSelection"; version="1.0"; sha256="194lk6anrb05gaarwdg8lj5wm6k61b4r702cja3nf3z91i8paqi7"; depends=[]; broken = true; }; + CausalKinetiX = derive2 { name="CausalKinetiX"; version="0.2.1"; sha256="0haxw4vvbw48hlvsl1d1y3xm48qm5vl0d3k5lj89ajwc618nk5jg"; depends=[cvTools deSolve fda glmnet pspline quadprog randomForest sundialr]; broken = true; }; CensRegMod = derive2 { name="CensRegMod"; version="1.0"; sha256="0qqwkxn8knhcjb6mph7mp7mma56zxslbvkfgfajq2lq4gbg901y4"; depends=[]; broken = true; }; CepLDA = derive2 { name="CepLDA"; version="1.0.0"; sha256="15vhk7l5mw2kicw2x60r4z71hc415g8kaf2p06jgf7ykxmzkj7kg"; depends=[astsa class MASS multitaper]; broken = true; }; CfEstimateQuantiles = derive2 { name="CfEstimateQuantiles"; version="1.0"; sha256="1qf85pnl81r0ym1mmsrhbshwi4h1iv19a2wjnghbylpjaslgxp6i"; depends=[]; broken = true; }; @@ -19457,6 +19699,7 @@ in with self; { CityPlot = derive2 { name="CityPlot"; version="2.0"; sha256="0lskgxmagqjglvpq39hgbygkf4qp28i2bj6b4m2av1s3pzb4465g"; depends=[]; broken = true; }; CityWaterBalance = derive2 { name="CityWaterBalance"; version="0.1.0"; sha256="0nvm6bv2cxszjf33xgn1xcvhrgrgbdcar0jahwf7bs03gdlpmgi1"; depends=[dataRetrieval dplyr EcoHydRology geoknife lubridate reshape2 tgp xts zoo]; broken = true; }; ClimDown = derive2 { name="ClimDown"; version="1.0.8"; sha256="0qcag9jwvhi9yss55wy5jxabrvym9hljn1fs5gfkzjs5hiwv3gxv"; depends=[abind fields foreach ncdf4 PCICt seas udunits2]; broken = true; }; + ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.3.1"; sha256="1dblw2m3lrzwv5avqsyvrainhssl3pgxff6dfab5jc72mg3c31ql"; depends=[climdex_pcic multiApply PCICt plyr]; broken = true; }; CoMiRe = derive2 { name="CoMiRe"; version="0.7.1"; sha256="0z42d5xawz7maqnzcqm5dv7v6bvqv3yzabp38bhxa3m3sz4dhvnd"; depends=[ggplot2 gtools KernSmooth mvtnorm NonpModelCheck Rcpp RcppArmadillo rlang splines2 truncnorm]; broken = true; }; CoinMinD = derive2 { name="CoinMinD"; version="1.1"; sha256="0invnbj5589wbs0k2w5aq9qak7axc3s0g9nw85c48lnl0v95s91i"; depends=[MCMCpack]; broken = true; }; ColorPalette = derive2 { name="ColorPalette"; version="1.0-1"; sha256="1dsj5njikx3qm2lnamqqg4qgwwyr11fwx9s5sdi7dkfx3nmf6dac"; depends=[]; broken = true; }; @@ -19486,10 +19729,13 @@ in with self; { D3GB = derive2 { name="D3GB"; version="1.1"; sha256="1r4hxx2qdws7c7hsnswzfh6az8mn720sk8nygilljl2ghnwpq7pa"; depends=[DBI RSQLite]; broken = true; }; DAMisc = derive2 { name="DAMisc"; version="1.7.2"; sha256="1mg40fqb0bj8jlw50dkkby67rj83g6pjhw9vbqvfxq30a1pq9inm"; depends=[AICcmodavg boot car clarkeTest coda dplyr DT effects ggplot2 haven janitor jtools lattice latticeExtra magrittr MASS nnet optiscale rlang srvyr survey tibble tidyr tidyselect xtable]; broken = true; }; DBGSA = derive2 { name="DBGSA"; version="1.2"; sha256="04zqh9y3nqcdzs5jn8aaq5idy9zl450ikvl788xs860wlg692qv2"; depends=[fdrtool]; broken = true; }; + DBIsqldf = derive2 { name="DBIsqldf"; version="0.9.9-2"; sha256="1yp9xqrf6dbq9478w0bd55rzhqf78anwrqzlkphbl7fk2d2ipy6i"; depends=[DBI]; broken = true; }; + DCD = derive2 { name="DCD"; version="0.1.0"; sha256="0p6vk8fdvpcvb1bb5fwy3h1v8y3djlvcm5jl5lnx30ngqj6d7rcj"; depends=[data_table doParallel foreach ggplot2 igraph lattice lsa Matrix plyr qlcMatrix Rdpack ROCR WGCNA]; broken = true; }; DCGL = derive2 { name="DCGL"; version="2.1.2"; sha256="1dhkdvdglpsr0fzrfrrr6q76jhwxgrcjsiqn56s082y7v366xvs4"; depends=[igraph limma]; broken = true; }; DEEPR = derive2 { name="DEEPR"; version="0.1"; sha256="0q8970q3gpjxwxdf2bkhpnqrxpm00w27b20a9sn9vv314rn1n7s8"; depends=[dirmult]; broken = true; }; DESnowball = derive2 { name="DESnowball"; version="1.0"; sha256="012kdnxmzap6afc3ffkcvk1mazlkp286av6g9fwz2wcbf5mh9n1m"; depends=[clue cluster combinat MASS]; broken = true; }; DET = derive2 { name="DET"; version="3.0.1"; sha256="0r2q1r4wc4nhhrr9bllxsp2w6ajja61mh34dyijjsfchx4025ljb"; depends=[doParallel pROC]; broken = true; }; + DIDmultiplegt = derive2 { name="DIDmultiplegt"; version="0.1.0"; sha256="1jzc2ixb92mxlm39xf3rmab9c8959xylnxacr4xqjnhi9hlkq30n"; depends=[assertthat dplyr fixest plotrix sampling stringr]; broken = true; }; DPWeibull = derive2 { name="DPWeibull"; version="1.8"; sha256="05sasi42cakq0k3syvn2hnvb0sl2dflw6x98riwgrjvsmnw6bh2g"; depends=[binaryLogic prodlim Rcpp RcppArmadillo survival truncdist]; broken = true; }; DSBayes = derive2 { name="DSBayes"; version="1.1"; sha256="0iv4l11dww45qg8x6xcf82f9rcz8bcb9w1mj7c7ha9glv5sfb25v"; depends=[BB]; broken = true; }; DSsim = derive2 { name="DSsim"; version="1.1.5"; sha256="0dr8dc91m7s5c198k9cb26a09f14wb8ihr46c0mr9cg33l2wf3nv"; depends=[fields mgcv mrds rgeos shapefiles sp splancs]; broken = true; }; @@ -19508,6 +19754,7 @@ in with self; { Demerelate = derive2 { name="Demerelate"; version="0.9-3"; sha256="1bsf09di6nh0hznqx829jnbn3092rya03hnc82cns6rm8d3bn0a9"; depends=[fts mlogit sfsmisc vegan]; broken = true; }; DengueRT = derive2 { name="DengueRT"; version="1.0.1"; sha256="11qfg4l6y3j8qh4dcsz13xjjj1n0q71c9a3c180nm5lgqv0nwb81"; depends=[drc ggplot2 nlme]; broken = true; }; Density_T_HoldOut = derive2 { name="Density.T.HoldOut"; version="2.00"; sha256="0kh5nns1kqyiqqfsgvxhx774i2mf4gcim8fp5jjyq577x4679r31"; depends=[histogram]; broken = true; }; + DependencyReviewer = derive2 { name="DependencyReviewer"; version="1.2.3"; sha256="0zyya2r3k2pxcjyzxx615pdg00vywzybk848fcchmhdivy0p0am0"; depends=[cli desc dplyr knitr lintr magrittr pak pkgdepends readr rlang stringr tidygraph]; broken = true; }; DetSel = derive2 { name="DetSel"; version="1.0.4"; sha256="01mpjy1cmgbrchdjl0gmrq3zx3mlkznml1qcradj2v5mgz26ifrv"; depends=[ash]; broken = true; }; DiffNet = derive2 { name="DiffNet"; version="1.0-0"; sha256="04dvf0qxnc6jizwfjxw731j7d2fxyapk06rmqvga6h3p075q0mqk"; depends=[data_table doParallel foreach gplots Hmisc igraph lsa Matrix qlcMatrix Rcpp RcppEigen]; broken = true; }; DiffusionRgqd = derive2 { name="DiffusionRgqd"; version="0.1.3"; sha256="1gf5jpvimfrc9ccva0jk85rl4zfkbijm2305ky1rxcgm4kgw4lax"; depends=[colorspace Rcpp RcppArmadillo rgl]; broken = true; }; @@ -19518,14 +19765,15 @@ in with self; { DnE = derive2 { name="DnE"; version="2.1.0"; sha256="02cbfb3m9xf24wkgqc06k3k0rx7qlqh4ma43khg6fpvif6yyahrn"; depends=[]; broken = true; }; DoE_multi_response = derive2 { name="DoE.multi.response"; version="0.1.0"; sha256="1289jlp10999kvyg5adw3dyc2mhh20i6biyqjbxd6g80a8dajknx"; depends=[DoE_wrapper]; broken = true; }; Dominance = derive2 { name="Dominance"; version="1.2.0"; sha256="1z2gcs7myf90986gzw9g3914ph5cyg6pq6k53h4z566x883q8maz"; depends=[chron igraph]; broken = true; }; + DominoDataCapture = derive2 { name="DominoDataCapture"; version="0.1.1"; sha256="168nvarg58x0w7bi365rd810gl5xz1b2kv8jv0myb7qwxdw1igm4"; depends=[lgr rjson uuid]; broken = true; }; DominoPredictionLogging = derive2 { name="DominoPredictionLogging"; version="0.1.0"; sha256="1qzh8inzqk1s6cw9bsl7hazdf6cbfr11zs22723wl4xs31inp1lg"; depends=[lgr rjson uuid]; broken = true; }; DrInsight = derive2 { name="DrInsight"; version="0.1.2"; sha256="1zz9i4aj0ijqfgp30wv0bvrgx2n003dysqg0pm13f7hni27819ff"; depends=[igraph qusage]; broken = true; }; + DriveML = derive2 { name="DriveML"; version="0.1.5"; sha256="0gbrrlz40cs95ml92k7q1lrxkm9iv5bjsr2sy9c7jzygnrlmnmms"; depends=[caTools data_table ggplot2 iml mlr ParamHelpers rmarkdown sampling SmartEDA]; broken = true; }; DunnettTests = derive2 { name="DunnettTests"; version="2.0"; sha256="1sf0bdxays10n8jh2qy85fv7p593x58d4pas9dwlvvah0bddhggg"; depends=[mvtnorm]; broken = true; }; DySeq = derive2 { name="DySeq"; version="0.22"; sha256="1sx6mg0bcqb5ff6x305k43zx3fwd16rvxc7xb3ai5h3w7fs9zz7y"; depends=[boot MASS TraMineR]; broken = true; }; DynComm = derive2 { name="DynComm"; version="2020.1.6"; sha256="09nhcp9rldwrybwhyg86mgpgwq4hzlpp4rm5a5gl33nnhvcdm0mx"; depends=[igraph Rcpp Rdpack]; broken = true; }; DynamicDistribution = derive2 { name="DynamicDistribution"; version="1.1"; sha256="1s78hpj2pxjs4vixin1i816qjbn3wk7b8rd2zdjp4d4rbxifcqf5"; depends=[]; broken = true; }; EBASS = derive2 { name="EBASS"; version="0.1"; sha256="14hxzj06wrc4ihflr7dqk28fsjwbcizr0jy54vhv0mk1y1gd4201"; depends=[]; broken = true; }; - EBEN = derive2 { name="EBEN"; version="4.6"; sha256="0gcf5b2viiq69vs8bd8nhk65g9sbzgg212w7zpnz4y6cv9jkk5zz"; depends=[]; broken = true; }; EDFIR = derive2 { name="EDFIR"; version="1.0"; sha256="0nv1badyg1dri6z91fvs68a72g22vdg0rpi3fkpxw527r11fvrrv"; depends=[geometry lpSolve MASS vertexenum]; broken = true; }; EIAdata = derive2 { name="EIAdata"; version="0.1.3"; sha256="0cx8x16jn8pfik7yd6vfqh23fqlfxnfj3ya42h5zbvsbka8rislh"; depends=[httr XML xts zoo]; broken = true; }; EILA = derive2 { name="EILA"; version="0.1-2"; sha256="0wxl9k4fa0f7jadw3lvn97iwy7n2d02m8wvm9slnhr2n8r8sx3hb"; depends=[class quantreg]; broken = true; }; @@ -19539,9 +19787,10 @@ in with self; { EcoHydRology = derive2 { name="EcoHydRology"; version="0.4.12.1"; sha256="075kgy6cxppkclk6nj5xs1f5yv9w8cpr09xwhf2101a6wswknb88"; depends=[DEoptim operators topmodel XML]; broken = true; }; EffectsRelBaseline = derive2 { name="EffectsRelBaseline"; version="0.5"; sha256="1dsnakcrgmlx44599ii92wvhxbxrh0hij59709wsskx1x1152zvh"; depends=[]; broken = true; }; ElectionsLATAM = derive2 { name="ElectionsLATAM"; version="0.1.1"; sha256="0xs3qff1ayq12cr7xszxvzmyihs4p9vsyrwcglll794vj096ylz4"; depends=[boot dplyr foreign lgr magrittr networkD3 R6 readr readxl testthat webshot]; broken = true; }; + ElstonStewart = derive2 { name="ElstonStewart"; version="1.2"; sha256="1lsapsz8w8srdqdkxvlg5nsn157wbihxjgdaf53r5iaxzcljkzxc"; depends=[digest kinship2]; broken = true; }; EntropyExplorer = derive2 { name="EntropyExplorer"; version="1.1"; sha256="02ljnq9ayxg4lrrnb6nlxr1k5ki8dd5i8hjb9fvvb19hwr2id5h4"; depends=[]; broken = true; }; EnviroStat = derive2 { name="EnviroStat"; version="0.4-2"; sha256="0ckax6vkx0vwczn21nm1dr8skvpm59xs3dgsa5bs54a3xhn5z9hs"; depends=[MASS]; broken = true; }; - EpiNow2 = derive2 { name="EpiNow2"; version="1.3.2"; sha256="1rcyhk0f18asrym9zd7hr5ss7aw2dd2m5wrjcsqkr8q7x6apwh3g"; depends=[BH cowplot data_table futile_logger future future_apply ggplot2 lifecycle lubridate patchwork progressr purrr R_utils Rcpp RcppEigen rlang rstan runner scales StanHeaders truncnorm]; broken = true; }; + EpiSemble = derive2 { name="EpiSemble"; version="0.1.0"; sha256="1m0a6lxd47vv8m9q5j2fxabakhmxw2srknxkccxig2r9glizlsfi"; depends=[Biostrings caret devtools doParallel e1071 entropy foreach ftrCOOL gbm iterators party randomForest seqinr splitstackshape stringr tibble tidyverse]; broken = true; }; EpiStats = derive2 { name="EpiStats"; version="1.5-1"; sha256="0swxww4x0qqlby4m8xw58jr5x2ml5z896m8w0f1v0mr7kf1v6fpi"; depends=[dplyr epiR]; broken = true; }; Eplot = derive2 { name="Eplot"; version="1.0"; sha256="1glmkjjj432z9g4gi56pgvfrm5w86iplirnd5hm4s99qci2hgc64"; depends=[]; broken = true; }; EstSimPDMP = derive2 { name="EstSimPDMP"; version="1.2"; sha256="05gp0gdix4d98111sky8y88p33qr5w4vffkp6mg9klggn37kdj8j"; depends=[]; broken = true; }; @@ -19551,9 +19800,11 @@ in with self; { FAMILY = derive2 { name="FAMILY"; version="0.1.19"; sha256="1912l2zj2cmh8yx8lkg8fpgvfddn6wbi1vrr4yx04mh73gk1s5mk"; depends=[pheatmap pROC]; broken = true; }; FBN = derive2 { name="FBN"; version="1.5.1"; sha256="0723krsddfi4cy2i3vd6pi483qjxniychnsi9r8nw7dm052nb4sf"; depends=[]; broken = true; }; FCGR = derive2 { name="FCGR"; version="1.0-0"; sha256="015nnnc9fasx0qjrc3lbxv14rqwyx36xzsw9076grwm5pqahrdsb"; depends=[kerdiest KernSmooth MASS mgcv nlme pspline sfsmisc]; broken = true; }; + FDRSeg = derive2 { name="FDRSeg"; version="1.0-3"; sha256="0dh6m5vlx664kryh56jzi3zxydjwa5217nhbwn6adp0q5qdh6d8a"; depends=[Rcpp stepR]; broken = true; }; FDRreg = derive2 { name="FDRreg"; version="0.1"; sha256="17hppvyncbmyqpi7sin9qsrgffrnx8xjcla2ra6y0sqzam1145y4"; depends=[fda mosaic Rcpp RcppArmadillo]; broken = true; }; FFdownload = derive2 { name="FFdownload"; version="1.1.0"; sha256="050mn48q36585s2xf0dbsb385rla1jnnlkppnagrijdpmkvjzfy9"; depends=[plyr rvest timetk xml2 xts zoo]; broken = true; }; FField = derive2 { name="FField"; version="0.1.0"; sha256="05q16v2vv64qhbnf2l66dwzmvgzyaq8vxwwdabp534bw7z7zpi8q"; depends=[]; broken = true; }; + FGSG = derive2 { name="FGSG"; version="1.0.2"; sha256="1r3sjhzf9gcnbcx6rqr1s555z8lcwm3fxl096md2jji336ijlk79"; depends=[]; broken = true; }; FREG = derive2 { name="FREG"; version="1.1"; sha256="1f9ss0aj6w6n0x4np6wi3ynhhcibr5zk54gzbkgpk6q3y7pv0qs1"; depends=[fda]; broken = true; }; FacPad = derive2 { name="FacPad"; version="3.0"; sha256="0h7knzin0rfk25li127zwjsyz223w7nx959cs328p6b2azhgn59b"; depends=[MASS Rlab]; broken = true; }; FactMixtAnalysis = derive2 { name="FactMixtAnalysis"; version="1.0"; sha256="1l4wfp39b7g38vdk6jpd5zq08sjhsg0s71f662aca2rj6l3a2x3r"; depends=[MASS mvtnorm]; broken = true; }; @@ -19582,7 +19833,6 @@ in with self; { GExMap = derive2 { name="GExMap"; version="1.1.3"; sha256="1a6i2z9ndgia4v96nkr77cjqnbgxigqbqlibg82gwa0a6pl7r7nz"; depends=[Biobase multtest]; broken = true; }; GGEBiplotGUI = derive2 { name="GGEBiplotGUI"; version="1.0-9"; sha256="0nd0ky3m1avy82z48g7hcysq0y0agxjxdn0g624dkm2w99avxw3j"; depends=[rgl tkrplot]; broken = true; }; GISTools = derive2 { name="GISTools"; version="0.7-4"; sha256="06alb5d2k4qj344i9cpgm3lz9m68rkmjqfx5k2hzn7z458xjrlxs"; depends=[maptools MASS RColorBrewer rgeos sp]; broken = true; }; - GMMAT = derive2 { name="GMMAT"; version="1.3.2"; sha256="04bqvcyg4zl2knnpp150a2jzx1s88ymnb1kcfa6l0jlmn98sm6z5"; depends=[CompQuadForm foreach Matrix Rcpp RcppArmadillo SeqArray SeqVarTools]; broken = true; }; GMZTests = derive2 { name="GMZTests"; version="0.1.4"; sha256="0a5rc9xc0rm97gf3m87x00hj11i6n3ygss4h57iia2hiqr76faak"; depends=[DCCA fgpt fitdistrplus nonlinearTseries PerformanceAnalytics tseries]; broken = true; }; GOGANPA = derive2 { name="GOGANPA"; version="1.0"; sha256="1xbir21zvr5hv2y6nndzpsrpmnr7glrc7y6xgcyb856wx46ajan9"; depends=[GANPA WGCNA]; broken = true; }; GPoM = derive2 { name="GPoM"; version="1.3"; sha256="1c870dfbpswx78n4s1v6zy0l1qknrs9335af0z01v1miyrmi95gd"; depends=[deSolve float rgl]; broken = true; }; @@ -19594,7 +19844,6 @@ in with self; { GSAgm = derive2 { name="GSAgm"; version="1.0"; sha256="18bhk67rpss6gg1ncaj0nrz0wbfxv7kvy1cxria083vi60z0vwbb"; depends=[edgeR survival]; broken = true; }; GWG = derive2 { name="GWG"; version="1.0"; sha256="1va0cd229dhhi1lmrkpwapcm96hrdmxilrmba02xnl7ikhisw0my"; depends=[]; broken = true; }; GaDiFPT = derive2 { name="GaDiFPT"; version="1.0"; sha256="15fnj1w30h0zdj032f3js0bbb1qlyk4b54a4aclykwzicqdgalkg"; depends=[]; broken = true; }; - GaSP = derive2 { name="GaSP"; version="1.0.1"; sha256="0l1a5w3wphm1748qmh3abv9yd1w92wg7irqpgdg6pc7598dvlkr9"; depends=[]; broken = true; }; GenForImp = derive2 { name="GenForImp"; version="1.0"; sha256="1wcvi52fclcm6kknbjh4r9bpkc2rg8nk6cddnf5j8zqbvrwf4k5x"; depends=[mvtnorm sn]; broken = true; }; GenHMM1d = derive2 { name="GenHMM1d"; version="0.1.0"; sha256="0liqfjx17xs8si15yrb4032ac33ibxn2xm010b244gfhl1wr2ar5"; depends=[actuar doParallel EnvStats extraDistr foreach ggplot2 matrixcalc reshape2 rmutil ssdtools VaRES VGAM]; broken = true; }; GenKern = derive2 { name="GenKern"; version="1.2-60"; sha256="12qmd9ydizl7h178ndn25i4xscjnrssl5k7bifwv94m0wrgj4x6c"; depends=[KernSmooth]; broken = true; }; @@ -19618,6 +19867,8 @@ in with self; { HBglm = derive2 { name="HBglm"; version="0.1"; sha256="1sral7lh5qw5mn31n8459pk52frgw1bjq0z5ckpsnbc4qf3xxcjn"; depends=[bayesm Formula MfUSampler sns]; broken = true; }; HCD = derive2 { name="HCD"; version="0.1"; sha256="158szwhpxwj2dj7sibyh8l92dk9cmy6acapmk8wf5hmfybdpgbsh"; depends=[data_table data_tree dendextend irlba Matrix randnet RSpectra stringr]; broken = true; }; HDMD = derive2 { name="HDMD"; version="1.2"; sha256="0na0z08fdf47ghfl2r3fp9qg5pi99kvp7liymwxym2wglkwl4chq"; depends=[MASS psych]; broken = true; }; + HDPenReg = derive2 { name="HDPenReg"; version="0.94.9"; sha256="17lra03iyvs51bgbnbhs4f5rvjvdz9zk7mg2f0xmsr4nvllp44ys"; depends=[Matrix Rcpp rtkore]; broken = true; }; + HDtest = derive2 { name="HDtest"; version="2.1"; sha256="1c9x4s59762sp7drbm5h1xv22kpifq7p0x3dkrfcd0ficbbma5v8"; depends=[checkmate clime doParallel expm fastclime foreach MASS mvtnorm]; broken = true; }; HI = derive2 { name="HI"; version="0.5"; sha256="0s63w3nrcw2zvrmkm54h1292y2iscdc1bck1wwf39qjndylcxvf4"; depends=[]; broken = true; }; HIV_LifeTables = derive2 { name="HIV.LifeTables"; version="0.1"; sha256="0qa5n9w5d5l1kr4827a34581q380xmpyzmmhhl300z1jwr0j94df"; depends=[]; broken = true; }; HIest = derive2 { name="HIest"; version="2.0"; sha256="0ik55kxhzjyg6z6072iz9nfaj7x1nvf91l1kysgvkjccr6jf3y86"; depends=[nnet]; broken = true; }; @@ -19630,6 +19881,7 @@ in with self; { HYRISK = derive2 { name="HYRISK"; version="1.2"; sha256="1ngwwzv1pavmscpca3ryzfxzd9rppsh0sm7k4sp2kzc9c0bix4xp"; depends=[kerdiest pbapply reliaR rgenoud sets triangle]; broken = true; }; HadoopStreaming = derive2 { name="HadoopStreaming"; version="0.2"; sha256="1l9msaizjvnsj1jrpghj4g057qifdgg6vbqhfxhn1fiqdqi2056q"; depends=[getopt]; broken = true; }; HarmonicRegression = derive2 { name="HarmonicRegression"; version="1.0"; sha256="0inz3l610wl0ibqjyrhfbmwmcfzcmcfhixai4lpkbfsyx93z2i4d"; depends=[]; broken = true; }; + HiCfeat = derive2 { name="HiCfeat"; version="1.4"; sha256="1imz7zfax74aakzk8457jww9r66qxpr2ncyvjj0y5paxdn76lnnq"; depends=[GenomeInfoDb GenomicRanges glmnet IRanges Matrix rtracklayer]; broken = true; }; HiLMM = derive2 { name="HiLMM"; version="1.1"; sha256="09135cwi6kqrvzdlivm86q1dqn6cbbi6nspdm0c2s700jl49pl5z"; depends=[]; broken = true; }; HierDpart = derive2 { name="HierDpart"; version="1.5.0"; sha256="10sphan6slzj6bsbzff4z7pglkjhv6xy719dm7594fmgqfjz0ici"; depends=[ade4 adegenet ape diveRsity entropart GGally ggplot2 hierfstat mmod pegas permute reshape2 tibble vegan]; broken = true; }; HierO = derive2 { name="HierO"; version="0.2"; sha256="1lqj5grjly4kzxl7wb192aagz2kdvpnjdan2kcg5yxwvg1xcvwv1"; depends=[bitops RCurl rneos tcltk2 XML]; broken = true; }; @@ -19637,6 +19889,7 @@ in with self; { Holidays = derive2 { name="Holidays"; version="1.0-7"; sha256="1srfbhlrf0pd6gzhp4hbic555lb7camk084rn1qz2g7fjvyijqiq"; depends=[TimeWarp]; broken = true; }; HyPhy = derive2 { name="HyPhy"; version="1.0"; sha256="0994ymv7sswbp8qw3pay34s926cflw2hq2gnchw7rknybvlsrinq"; depends=[ape R_utils]; broken = true; }; HybridMC = derive2 { name="HybridMC"; version="0.2"; sha256="1wgzfyk0scwq9s2sdmc91fj7r4d7zlgwgnj6mdiia8w88ja8kzqy"; depends=[coda]; broken = true; }; + HydeNet = derive2 { name="HydeNet"; version="0.10.11"; sha256="1qi87k2drizqba1nz8psh697ks8ai8xz492kzsrs76xlxpbk1i9k"; depends=[checkmate DiagrammeR dplyr graph magrittr nnet pixiedust plyr rjags stringr]; broken = true; }; IAbin = derive2 { name="IAbin"; version="1.0"; sha256="1cpj2mx72n4v0yd8jbbnhj2w5d0sc8pw7rc8ahnn1hfa38pwwsyx"; depends=[]; broken = true; }; IBDhaploRtools = derive2 { name="IBDhaploRtools"; version="1.8"; sha256="1754239pdil6b383mpzyi8zb9l9hzg15dwgn5246v97g1y3mlp5r"; depends=[]; broken = true; }; IC2 = derive2 { name="IC2"; version="1.0-1"; sha256="03jjb62msxjxdg9l3zd1ns0d2w37hkxy5pnjgaywxw3vfk4zwfj9"; depends=[]; broken = true; }; @@ -19644,6 +19897,7 @@ in with self; { ICBayes = derive2 { name="ICBayes"; version="1.2"; sha256="1hdh7g4nk6yy0xz9564vpvh1blrw30lvyw2wc5mmgn78kwjqla34"; depends=[coda HI survival]; broken = true; }; ICE = derive2 { name="ICE"; version="0.69"; sha256="04p8lakaha28mdh965w0ppyxfrz5ssi1n9xifvsbn3ihdra67rip"; depends=[KernSmooth]; broken = true; }; IDSpatialStats = derive2 { name="IDSpatialStats"; version="0.3.12"; sha256="0gkicafnzq8aq9bmbbr9n868sh91dwkhs1dk4wry5vkbfaawfxis"; depends=[doParallel foreach igraph spatstat_core spatstat_geom]; broken = true; }; + IFAA = derive2 { name="IFAA"; version="1.1.2"; sha256="0phy8g1b0z1cv8sd1ynfnn29clm57wfj7qszlwnz12p20l7viwdd"; depends=[DescTools doParallel doRNG foreach glmnet HDCI mathjaxr Matrix MatrixExtra parallelly S4Vectors stringr SummarizedExperiment]; broken = true; }; IGG = derive2 { name="IGG"; version="1.0"; sha256="1cibb9z18xc1zx1813lk14n6p5am84hm7w0hkrsif4j3p89lrwif"; depends=[GIGrvg glmnet MASS Matrix pscl]; broken = true; }; IGP = derive2 { name="IGP"; version="0.2.0"; sha256="1hsyl6cjm84w4f4v0gw4hi5y483r8v78xb3k3h1ixix9ymjqr8y5"; depends=[R6 reticulate]; broken = true; }; IMAGE = derive2 { name="IMAGE"; version="1.0"; sha256="0xgrja7qhklcmbm0zz5xg94gw5kl05nk3v77l7vxq2d5sk0435g3"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo]; broken = true; }; @@ -19711,9 +19965,9 @@ in with self; { LogisticDx = derive2 { name="LogisticDx"; version="0.3"; sha256="1hry32grqwlarp0cplx8szf4pf7ml1nxd11ahffmr72ihcv5ckga"; depends=[aod data_table pROC RColorBrewer rms speedglm statmod]; broken = true; }; LogitNet = derive2 { name="LogitNet"; version="0.1-1"; sha256="08xi5rpbqkc1b3qj24blv3l0r68wcqbsbjcqxiypm75f3c2irc4i"; depends=[]; broken = true; }; LogrankA = derive2 { name="LogrankA"; version="1.0"; sha256="005zkpzi8h03qvqlpkygrf9xv4q77klafkfxw47x04jvkhklwigb"; depends=[]; broken = true; }; + LowRankQP = derive2 { name="LowRankQP"; version="1.0.5"; sha256="0xqygbcdk7sizlch4rvq6klm9k0h6vp77v09zfgcz0rhrxqv0nby"; depends=[]; broken = true; }; M3 = derive2 { name="M3"; version="0.3"; sha256="1l40alk166lshckqp72k5zmsgm7s5mgyzxlp11l64mgncjwkw2r3"; depends=[mapdata maps ncdf4 rgdal]; broken = true; }; MAFDash = derive2 { name="MAFDash"; version="0.2.1"; sha256="11d503sw423ddawj8lapxpm59532nxz4b6wh06fn4kqzh0gq1mbj"; depends=[bsplus canvasXpress circlize ComplexHeatmap crosstalk data_table dplyr DT ensurer flexdashboard GenomicRanges ggbeeswarm ggplot2 htmltools IRanges knitr maftools pheatmap plotly readr reshape2 rmarkdown TCGAbiolinks tibble tidyr]; broken = true; }; - MAGEE = derive2 { name="MAGEE"; version="1.2.0"; sha256="0xyz4m3b09yxjlzy3j2akwpngbqjqjcbsfkn6hig4wi4lw7szc8a"; depends=[CompQuadForm foreach GMMAT MASS Matrix Rcpp RcppArmadillo SeqArray SeqVarTools]; broken = true; }; MAPLES = derive2 { name="MAPLES"; version="1.0"; sha256="0hzsh7z1k7qazpxjqbm9842zgdpl51irg7yfd119a7b2sd3a8li9"; depends=[mgcv]; broken = true; }; MARX = derive2 { name="MARX"; version="0.2"; sha256="1rc87hz719khl8mclbkfdix499nsc4nyihaaavd73nany7iprm02"; depends=[fBasics matlab metRology stabledist tseries]; broken = true; }; MATTOOLS = derive2 { name="MATTOOLS"; version="1.1"; sha256="1nzrkm3a08rpsd9vplyf33rrkadlrd0ln70k95qxj98ndh2v97px"; depends=[]; broken = true; }; @@ -19723,6 +19977,7 @@ in with self; { MBCluster_Seq = derive2 { name="MBCluster.Seq"; version="1.0"; sha256="0xbi2r0g0gzsy05qrq1ljr5f5s3glwxj204vk2f1lgwdx3fd116m"; depends=[]; broken = true; }; MBI = derive2 { name="MBI"; version="1.0"; sha256="1lb0sjwa6x360n9a9pagz6yhxh37gxq1fk0f5c3i2sd56ny9jpns"; depends=[]; broken = true; }; MC2toPath = derive2 { name="MC2toPath"; version="0.0.16"; sha256="0jdn9wpxavn2wrml907v23mfxr62wwjdh7487ihjj59g434ry7wh"; depends=[RNetCDF]; broken = true; }; + MCDA = derive2 { name="MCDA"; version="0.0.24"; sha256="08xghwzb19ynzvl8l8z14lm97ggw5x05czjljhvm2ws4sknjpqy7"; depends=[combinat ggplot2 glpkAPI plyr RColorBrewer Rglpk triangle]; broken = true; }; MCDM = derive2 { name="MCDM"; version="1.2"; sha256="0r27y9mqvfnv1m0yi2xdyjr4y1s43d5yav960kz2xa732hrrxw01"; depends=[RankAggreg]; broken = true; }; MCMChybridGP = derive2 { name="MCMChybridGP"; version="5.4"; sha256="19nbch76g7jf53nrb1lyzr3zd0z6rpz2k86mq1r9aidwwxh81g7p"; depends=[MASS]; broken = true; }; MCPModPack = derive2 { name="MCPModPack"; version="0.4"; sha256="1xal4dj6i4qvifv4k8x7i1xzh1qq6fcddxk5d8wgriz1viqy2v03"; depends=[devEMF flextable mvtnorm officer Rcpp RcppEigen RcppNumerical shiny shinydashboard]; broken = true; }; @@ -19757,18 +20012,14 @@ in with self; { MRMR = derive2 { name="MRMR"; version="0.1.4"; sha256="0dgbhlynaaka7mdzl6igwgcdzvy6cm2y8mbxaf9pfla8w3z8y0lq"; depends=[ggplot2 lmtest lubridate plyr reshape2]; broken = true; }; MRsurv = derive2 { name="MRsurv"; version="0.2"; sha256="148myzk6r8whkpv1yv59dmdlr2n8vdwmaww165aw696xfjxwq550"; depends=[mvtnorm survival]; broken = true; }; MSGLasso = derive2 { name="MSGLasso"; version="2.1"; sha256="1k17vnvzr647pwfbdxrpqcsp34iygq86wf0ns4rq8cj6q5mik1bv"; depends=[]; broken = true; }; - MTE = derive2 { name="MTE"; version="1.0.2"; sha256="11kbh6sphzyn2k279sfpgyvr32hpggh98cz1saszlpsfg9l8xdn0"; depends=[glmnet quantreg rqPen]; broken = true; }; MVB = derive2 { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo]; broken = true; }; MaXact = derive2 { name="MaXact"; version="0.2.1"; sha256="1n7af7kg54jbr09qk2a8gb9cjh25cnxzj2snscpn8sr8cmcrij0i"; depends=[mnormt]; broken = true; }; - ManlyMix = derive2 { name="ManlyMix"; version="0.1.14"; sha256="0zpcc74965n435d4fah41r9nz0kjyn46hkjl1s0kvlllqj6n69wg"; depends=[]; broken = true; }; - Mapinguari = derive2 { name="Mapinguari"; version="1.0.0"; sha256="1jfqinfr6wkpmkp4jm9ixgawcywm3n1ni03h6zngvx74saz7kd3g"; depends=[dplyr magrittr raster rgdal rlang stringr testthat]; broken = true; }; MaskJointDensity = derive2 { name="MaskJointDensity"; version="1.0"; sha256="0nxhsz57cw96in0sg5xg7sicv920kcnxr2rikn39y2qk4vrw6r78"; depends=[ks MASS np plyr]; broken = true; }; MasterBayes = derive2 { name="MasterBayes"; version="2.58"; sha256="0s6zry5nhwg3zbfgqd6zdrys0irf6336gfcba77z7xwssd4gh9j5"; depends=[coda genetics gtools kinship2]; broken = true; }; MatManlyMix = derive2 { name="MatManlyMix"; version="1.1.1"; sha256="1d2vd5b9lirdybjclxh0nn4mghq64qjj4l8vnj95cni5pfa18a2c"; depends=[]; broken = true; }; - MatTransMix = derive2 { name="MatTransMix"; version="0.1.15"; sha256="1s2wmhiqn024x9l217xak3wp3dbd3mfrih70xc5mc1b4555f2fbm"; depends=[mvtnorm]; broken = true; }; Matrix_utils = derive2 { name="Matrix.utils"; version="0.9.8"; sha256="0a5fq1scykqk0kc9j051j6fix6j2dqwz5wbgb0amaxsiywz9vigb"; depends=[grr Matrix]; broken = true; }; - MaximinInfer = derive2 { name="MaximinInfer"; version="1.0.0"; sha256="1m6xb4blpahgm7b4h96rdg2qakgn893sfjk45flxnvn8gipbwlrh"; depends=[CVXR glmnet intervals MASS SIHR]; broken = true; }; MedOr = derive2 { name="MedOr"; version="0.1"; sha256="1rwc14s16lnzgb78ac2017hv9pss7zw7nw3y7vrvq1qx4fgiw6f8"; depends=[]; broken = true; }; + MedSurvey = derive2 { name="MedSurvey"; version="1.1.1.3.0"; sha256="11lkli2arl5w2aizzd93fb6xsy30000nf3qc08qirrm07rwypaly"; depends=[lavaan Matrix survey]; broken = true; }; MeshesOperations = derive2 { name="MeshesOperations"; version="0.1.0"; sha256="1fms9yd7m8rl3kr244v9cyf3sx3fgrz13q42ikvhqbxr79fy9f6j"; depends=[BH data_table gmp Rcpp RcppCGAL RcppEigen rgl Rvcg]; broken = true; }; MetABEL = derive2 { name="MetABEL"; version="0.2-0"; sha256="0rqjv85mgswrbbp8b8ip6cdmz0cvfy9lm5mcr8a7h38rzgx3g3i3"; depends=[]; broken = true; }; MetFns = derive2 { name="MetFns"; version="3.2.2"; sha256="15fd2d0yysibi2x43qv6b8i1pa18l7z4n0zpmrqhsmvqkgy8sla0"; depends=[astroFns lubridate plotrix pracma]; broken = true; }; @@ -19787,8 +20038,6 @@ in with self; { Miney = derive2 { name="Miney"; version="0.1"; sha256="0sgln0653rgglinr8rns5s2az0lgyp9slmynyhhhs265grkhrfj0"; depends=[]; broken = true; }; MixMAP = derive2 { name="MixMAP"; version="1.3.4"; sha256="0gxghym5ghbyxf589hda2fhv5l3x5jvm6i40x5xdwx4hadcn8k9a"; depends=[lme4]; broken = true; }; ModelGood = derive2 { name="ModelGood"; version="1.0.9"; sha256="1y99a7bgwx167pncxj00lbw3cdjj23fhhzl8r24hwnhxr984kvzl"; depends=[prodlim]; broken = true; }; - Monte_Carlo_se = derive2 { name="Monte.Carlo.se"; version="0.1.0"; sha256="1d5gp4wvpvrlp82g8k8v668mzhmdlk2pvky34v7hxysap9xgmsqr"; depends=[]; broken = true; }; - Morphoscape = derive2 { name="Morphoscape"; version="1.0.0"; sha256="1kmr9pf5a6lyhmzbzs8h8fvr4lhm5f9k5a1bbglw369m053rgd4c"; depends=[automap concaveman ggplot2 sp]; broken = true; }; MorseGen = derive2 { name="MorseGen"; version="1.2"; sha256="1kq35n00ky70zmxb20g4mwx0hn8c5g1hw3csmd5n6892mbrri8s9"; depends=[]; broken = true; }; MortalityLaws = derive2 { name="MortalityLaws"; version="1.9.4"; sha256="1xm32nrfr6sx38w3201s70iqf6i34cvpq5dm6xrrq7584klny6cb"; depends=[minpack_lm pbapply RCurl tidyr]; broken = true; }; MrSGUIDE = derive2 { name="MrSGUIDE"; version="0.1.2"; sha256="1hd0lvvy12r6kxa64vwnjavyv2f7a9jqgjxgmlw86wwh5g09hvfd"; depends=[BH magrittr Rcpp RcppArmadillo yaml]; broken = true; }; @@ -19807,6 +20056,7 @@ in with self; { NHMM = derive2 { name="NHMM"; version="3.11"; sha256="1ynxk4dpllb3w8229dmxzjdmf0zh5cgmh3wa55d02disc6yhm77k"; depends=[BayesLogit MASS MCMCpack msm Rcpp]; broken = true; }; NITPicker = derive2 { name="NITPicker"; version="1.0.1"; sha256="00jmin7y1bp7a4a1qcvv3rkgiy9qij7gbkxcdgpiyzcs6aaif59z"; depends=[fda fda_usc fdasrvf]; broken = true; }; NLMR = derive2 { name="NLMR"; version="1.1"; sha256="1m08nm71wbam6d8nj8akwqrm6nq5bvm3v76kdlasdgs7v36xzri6"; depends=[checkmate dplyr fasterize igraph RandomFields raster Rcpp sf spatstat_core spatstat_geom tibble]; broken = true; }; + NMproject = derive2 { name="NMproject"; version="0.6.9"; sha256="0br58m07yf5bxizz3m14rbskhracyg99gq6di9a5rgzycgs3rvg4"; depends=[crayon diffobj dplyr DT dygraphs git2r htmltools lifecycle magrittr miniUI rlang rmarkdown rprojroot rstudioapi shiny stringr tidyr usethis]; broken = true; }; NORMT3 = derive2 { name="NORMT3"; version="1.0.4"; sha256="147z920qbwf8fgd6a9mn6qjyvbhapc8sl4i7v0pkcpjrs6gkx1sa"; depends=[]; broken = true; }; NPC = derive2 { name="NPC"; version="1.1.0"; sha256="06y6vdln5zyinq9bsp66yz6i1v5bkw9pa2hknl9brwc75z359apn"; depends=[coin dplyr matlab permute]; broken = true; }; NPMLEmix = derive2 { name="NPMLEmix"; version="1.2"; sha256="056jb3kz34lajryfbzkhq0g372iib6h8mr74mq18xkarp5blgmsl"; depends=[CAMAN dplyr FDRreg Hmisc latexpdf Matrix mosaic pbapply pracma progress R_utils Rcpp REBayes Rmosek spatstat]; broken = true; }; @@ -19844,6 +20094,7 @@ in with self; { PAGI = derive2 { name="PAGI"; version="1.0"; sha256="01j1dz5ihqslpwp9yidmhw86l112l7rfkswmf03vss872mpvyp3f"; depends=[igraph]; broken = true; }; PAMA = derive2 { name="PAMA"; version="1.2.0"; sha256="12fvkcdkn66gzr193fq9byf64qlq2x9dkjv9hpfw770l4yw496jn"; depends=[ExtMallows mc2d PerMallows rankdist Rcpp]; broken = true; }; PANDA = derive2 { name="PANDA"; version="0.9.9"; sha256="1sf3c49v4mb3mz2imqlqdbh1iab7bc2pxpi8bmgj2jld133555ip"; depends=[cluster GO_db]; broken = true; }; + PAutilities = derive2 { name="PAutilities"; version="1.1.0"; sha256="0qqxizq856wkx2x5g5pdnb4srh5xj0xyaljbk3i6nq5q41vrw5xk"; depends=[dplyr equivalence ggplot2 lazyeval lubridate magrittr Rcpp reshape2 rlang]; broken = true; }; PEMM = derive2 { name="PEMM"; version="1.0"; sha256="18dd9hsbdrnhrrff7gpdqrw2jv44j8lg0v3lkcdpbd4pppcaq84h"; depends=[]; broken = true; }; PIPS = derive2 { name="PIPS"; version="1.0.1"; sha256="1c5v3s6xys9p1q32k6mpsffhi9gwsq951rh12hs76dmak862yspc"; depends=[]; broken = true; }; PKPDmodels = derive2 { name="PKPDmodels"; version="0.3.2"; sha256="1h893civ77ahbgjnc6kq3l7rszmqmx9dlxwavldigpq3r79vd86k"; depends=[]; broken = true; }; @@ -19853,6 +20104,7 @@ in with self; { POFIBGE = derive2 { name="POFIBGE"; version="0.1.6"; sha256="0llam63hjf1yi6qc44bpgr6dmc4b8sy0sn8gwcgzz50apsn1glc9"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; broken = true; }; POPdemog = derive2 { name="POPdemog"; version="1.0.3"; sha256="0j83c853ligmw8ag4pb0vj46sfn2w2ynh4wvgkabzs688hxxni8r"; depends=[]; broken = true; }; PROTOLIDAR = derive2 { name="PROTOLIDAR"; version="0.1"; sha256="0bz3071b0wlcvh40vl3dyiiixk5avsj6kjjnvlvx264i5g08rij4"; depends=[]; broken = true; }; + PReMiuM = derive2 { name="PReMiuM"; version="3.2.8"; sha256="1hxv4h359fl3lx3d17cq1jjnl423skbp7wccrnrhf68d8h7gx2ff"; depends=[BH cluster data_table gamlss_dist ggplot2 plotrix Rcpp RcppEigen sf spdep]; broken = true; }; PSIMEX = derive2 { name="PSIMEX"; version="1.1"; sha256="0cndzasvg4y49incyd9nfz8y3z88ywbc7xk0zzjir665pv2xn23b"; depends=[knitr MCMCglmm pedigree plotrix]; broken = true; }; PUlasso = derive2 { name="PUlasso"; version="3.2.4"; sha256="0mcmya0a5wzmssq05vpmkx9icfrq49kc0dc9ri3d9kx4w0sabffh"; depends=[doParallel foreach ggplot2 Matrix Rcpp RcppEigen]; broken = true; }; PandemicLP = derive2 { name="PandemicLP"; version="1.3.0"; sha256="12mhzzp5qjdg4krwa7z51lbcyxnp9lyp3jb16bcchmy3ggd1m3cx"; depends=[BH covid19br curl dplyr plotly Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tidyr]; broken = true; }; @@ -19871,10 +20123,13 @@ in with self; { PopGenKit = derive2 { name="PopGenKit"; version="1.0"; sha256="0l4mbm0cyppgvcw2cbimrv29aiciyj00k8wfwcj5zr8sh7fgfhs4"; depends=[]; broken = true; }; PopGenome = derive2 { name="PopGenome"; version="2.7.5"; sha256="0xdwgih1n7bkykbzrnp293yzrlj80vr2v6rlsww61nxlhynbh9yn"; depends=[ff]; broken = true; }; PortalHacienda = derive2 { name="PortalHacienda"; version="0.1.6"; sha256="11fcd1m751xahv13s61n2lzxqxhzfkcxk3zv9kyjvrzb0fiy4jss"; depends=[curl dplyr forecast httr lubridate magrittr purrr tibble timetk xts zoo]; broken = true; }; + PortfolioEffectEstim = derive2 { name="PortfolioEffectEstim"; version="1.4"; sha256="1sfgkwyn7vfy3rqb1cglywiv5xmyxhzvj38vgrvfq5jf3hvzsg21"; depends=[PortfolioEffectHFT rJava]; broken = true; }; + PortfolioEffectHFT = derive2 { name="PortfolioEffectHFT"; version="1.8"; sha256="0y4x0d91j6g52136d921hfs5swzf85gkxafxfkf3c15dl5ns120v"; depends=[ggplot2 rJava zoo]; broken = true; }; PoweR = derive2 { name="PoweR"; version="1.0.7"; sha256="040wc7hxa8y6bm1rs7ip2skdxmmwksxkyb6xzqgdjp8m7a25fppb"; depends=[Rcpp RcppArmadillo]; broken = true; }; PredictiveRegression = derive2 { name="PredictiveRegression"; version="0.1-4"; sha256="15vkisj3q4hinc3d537s8inhj3wk62q67qhy050xmp9j563ainmd"; depends=[]; broken = true; }; PriorCD = derive2 { name="PriorCD"; version="0.1.0"; sha256="1mb50w2i8sfxjzqd5xnfysn3jnzkkyv6l8algxnp0xpyhcq41pfs"; depends=[dplyr igraph ROCR visNetwork]; broken = true; }; ProFit = derive2 { name="ProFit"; version="1.3.3"; sha256="0jrw0v7dg5mf4zxg7pqybh9qzsiqb3nnz8g5qlc4iz73mhr9gm2b"; depends=[celestial checkmate cubature FITSio LaplacesDemon magicaxis RColorBrewer]; broken = true; }; + ProbReco = derive2 { name="ProbReco"; version="0.1.2"; sha256="1f56r0w3rxwdyiq7r18mm8a5j80p3dwcnphgxyy6h5binzdwyfgx"; depends=[BH mvtnorm purrr Rcpp RcppEigen RcppParallel Rdpack StanHeaders]; broken = true; }; PropensitySub = derive2 { name="PropensitySub"; version="0.2.0"; sha256="0cx8f3pcn37vrk1d3jbsnpkcdd1pf8xi4v7si4ii4rkxr2iszahd"; depends=[dplyr ggplot2 gridExtra gtable Matching nnet plyr pROC rlang scales survival survminer]; broken = true; }; PsumtSim = derive2 { name="PsumtSim"; version="0.4"; sha256="0079kb1bgsxs4cwmn33rbbk2jgq39rdjfgz9k9hc64iyzz0i6na3"; depends=[boot EffectsRelBaseline]; broken = true; }; PubBias = derive2 { name="PubBias"; version="1.0"; sha256="0dr5dhfx57knrs05pbx9ngg4k2937n8gjzsgd0jfqd8dfxhy051k"; depends=[R_utils rmeta]; broken = true; }; @@ -19886,6 +20141,7 @@ in with self; { QualInt = derive2 { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdcydnk5kn2i8p1rgl2dwn7cqcqblfvsr4j"; depends=[ggplot2 survival]; broken = true; }; QuantTools = derive2 { name="QuantTools"; version="0.5.7.1"; sha256="1nkf7ihzfwgz7svh1jybgcvqwbim2dqzi00l4m9pma463va4q19d"; depends=[data_table fasttime R6 Rcpp RCurl readxl]; broken = true; }; QuantumClone = derive2 { name="QuantumClone"; version="1.0.0.6"; sha256="1520jgkzp8g7gv7ggqhvlrdnpdyhygqjgsd1my5jq30afdqj6qmp"; depends=[DEoptim doParallel foreach fpc ggplot2 gridExtra NbClust optimx]; broken = true; }; + QuasiSeq = derive2 { name="QuasiSeq"; version="1.0-11-0"; sha256="0lbzmd3mxjfcmvp3p3c8az2kp2fxrrv5mn28sqmsxwhvx3bd26rw"; depends=[edgeR mgcv pracma]; broken = true; }; R2019nCoV = derive2 { name="R2019nCoV"; version="0.1.0"; sha256="1959mwacn0zzq0g5ili2v6aqs51rb6qvlsv16xx7qwml8xahf215"; depends=[dplyr ggplot2 jsonlite maps pinyin]; broken = true; }; R2DGC = derive2 { name="R2DGC"; version="1.0.3"; sha256="0f84fmpf3m2s2p6bllvjs8rgnhwjy54adblv02dq8gakwvb4j2aw"; depends=[]; broken = true; }; R330 = derive2 { name="R330"; version="1.0"; sha256="01sprsg7kph62abhymm8zfqr9bd6dhihrfxzgr4pzi5wj3h80bjm"; depends=[lattice leaps rgl s20x]; broken = true; }; @@ -19911,13 +20167,11 @@ in with self; { RFmerge = derive2 { name="RFmerge"; version="0.1-10"; sha256="1gcdd0a0czimzmzq2izskdaj26cc7qchrwlhssvnh5k59yx54r4l"; depends=[pbapply randomForest raster sf sp zoo]; broken = true; }; RFreak = derive2 { name="RFreak"; version="0.3-0"; sha256="1dmllxb6yjkfkn34f07j2g7w5m63b5d10lh9xsmxyfk23b8l3x0x"; depends=[rJava]; broken = true; }; RGA = derive2 { name="RGA"; version="0.4.2"; sha256="0pjizgvrh0gbjlyxlb3v93nhigg8rpq3mziv1qlp6r0s5y7cmpi9"; depends=[httr jsonlite lubridate plyr]; broken = true; }; - RGBM = derive2 { name="RGBM"; version="1.0-10"; sha256="0p3pw7ddmzhl527xphvsiy8v0liymkjk27yj5rhixb58kdw71g0y"; depends=[doParallel foreach plyr]; broken = true; }; RGISTools = derive2 { name="RGISTools"; version="1.0.2"; sha256="0pildj5pmc34f58bv39gxl3p2g0cr32przdhjnss37kcdlcv5zlb"; depends=[curl fields httr mapview raster Rdpack rjson rvest sf sp stars tmap urltools XML xml2]; broken = true; }; RGoogleAnalytics = derive2 { name="RGoogleAnalytics"; version="0.1.6"; sha256="05wbcdksx5g6y7x4r1pvc9is3afxbpdxdbmc6b4jhn46rg4228z4"; depends=[digest httr lubridate]; broken = true; }; RGtk2 = derive2 { name="RGtk2"; version="2.20.36.2"; sha256="1m3a3h3yxmr2qpcdyxrwxrdplvhb4rprvd8cnmfwk3zkazd69f9n"; depends=[]; broken = true; }; RHT = derive2 { name="RHT"; version="1.0"; sha256="1gxf8nhj3y92h8al7l3fxa45wc568kb3cykrbdjlsy2zjacf7fcc"; depends=[]; broken = true; }; RM2 = derive2 { name="RM2"; version="0.0"; sha256="1v57nhwg8jrpv4zi22fhrphw0p0haynq13pg9k992sb0c72dx70a"; depends=[msm]; broken = true; }; - RMediation = derive2 { name="RMediation"; version="1.2.0"; sha256="17xn1v5hqm9f8546z9l3ym268rq9iky84zkxccxk3nddcpmkj3m5"; depends=[doParallel e1071 foreach iterators lavaan MASS modelr OpenMx stringr]; broken = true; }; RNAstructureModuleMiner = derive2 { name="RNAstructureModuleMiner"; version="0.1.0"; sha256="026r1h4z1jdfww0ay9iixa77ax6b19pgp589bbn77xg1vwjjlbsk"; depends=[RRNA]; broken = true; }; RNRCS = derive2 { name="RNRCS"; version="0.2.5"; sha256="19q78l8mh4701vqvr36vqc87n39s5ivzhiy5lvnxbd4dgibk1jr2"; depends=[ggplot2 magrittr rvest xml2]; broken = true; }; RODM = derive2 { name="RODM"; version="1.1"; sha256="0cyi2y3lsw77gqxmawla5jlm4vnhsagh3ykdgb6izxslc4j2fszx"; depends=[RODBC]; broken = true; }; @@ -19932,7 +20186,6 @@ in with self; { RSurvey = derive2 { name="RSurvey"; version="0.9.3"; sha256="0yk969jdvpgv01zbmk4zyxcmrbdizh37bddj1k128ndyf191z37x"; depends=[colorspace inlmisc MBA raster rgdal rgeos sp]; broken = true; }; RSwissMaps = derive2 { name="RSwissMaps"; version="0.1.0.1"; sha256="16sdd0115793yj74i9m64yfxxn3gkk4nvb0qk2w8j7jjbqhflis0"; depends=[downloader dplyr ggplot2]; broken = true; }; RTConnect = derive2 { name="RTConnect"; version="0.1.4"; sha256="1000jmmqzyhl6vh1ii75jdh88s9inaz52gvfwcin2k2zr7bi91ba"; depends=[]; broken = true; }; - RTL = derive2 { name="RTL"; version="1.3.2"; sha256="0x1r7p7y0hcgspy9a27s32nvdm5pw8rg38cl770z88fqhk8zzncn"; depends=[dplyr ggplot2 glue httr jsonlite lifecycle lubridate magrittr PerformanceAnalytics plotly purrr Rcpp RCurl readr rlang stringr tibble tidyr tidyselect timetk tsibble TTR xts zoo]; broken = true; }; RTextureMetrics = derive2 { name="RTextureMetrics"; version="1.1"; sha256="0d0mvpmcpd62cvqlajrqp32lnvpflyf9bqvdzly2v8v1kb8274fc"; depends=[]; broken = true; }; RVFam = derive2 { name="RVFam"; version="1.1"; sha256="0gw8rgq11zndnqmay6y3y5rmmljvwhxzm2pqa90vs5413dnchq92"; depends=[coxme kinship2 lme4 MASS Matrix survival]; broken = true; }; RVideoPoker = derive2 { name="RVideoPoker"; version="0.3"; sha256="06s4dlw0pw8rcq5b31xxqdpdk396rf27mai2vpvmn585vbm1ib7a"; depends=[pixmap rpanel tkrplot]; broken = true; }; @@ -19940,11 +20193,13 @@ in with self; { RWBP = derive2 { name="RWBP"; version="1.0"; sha256="104vr2cdk185hh4zn3vmqvb14p1q8ifk11wdgvk7fli1m1zxxwdd"; depends=[igraph lsa RANN SnowballC]; broken = true; }; RWebLogo = derive2 { name="RWebLogo"; version="1.0.3"; sha256="1n65mlnr163ywjnyyngnigbj0wpgkr38c3nx8hw5r8mwjnf3d617"; depends=[findpython]; broken = true; }; RYoudaoTranslate = derive2 { name="RYoudaoTranslate"; version="1.0"; sha256="1i3iyqh97vpn02bm66kkmw52ni29js30v18n2aw8pvr88jpdgxm4"; depends=[RCurl rjson]; broken = true; }; + RaProR = derive2 { name="RaProR"; version="1.1-5"; sha256="11hwg609pjcd13qnbchbs86c3q8f4nmh1xfxg3dsiijljl6lzx3n"; depends=[]; broken = true; }; RadTran = derive2 { name="RadTran"; version="1.0"; sha256="1sb8d4y3b37akbxhdavxrkp34zn3ip061b7gzy0ga57pyn76cvpn"; depends=[ReacTran rootSolve]; broken = true; }; Rambo = derive2 { name="Rambo"; version="1.1.1"; sha256="036rvjj6gcnf2gg5xl55n5p8j1pzifb9wmlpwnymz1csxgkl477i"; depends=[sna]; broken = true; }; RandomCoefficients = derive2 { name="RandomCoefficients"; version="0.0.2"; sha256="04l0aczrlbkjk0687w2gxs85ia71yy69mgankwkl37ksznh6y81m"; depends=[fourierin ks orthopolynom polynom RCEIM rdetools robustbase sfsmisc snowfall statmod tmvtnorm VGAM]; broken = true; }; RandomFields = derive2 { name="RandomFields"; version="3.3.14"; sha256="0c5r7l642cw56km56ijachnqhjh5k0izy03cl14rvbwkpywh09i4"; depends=[RandomFieldsUtils sp]; broken = true; }; RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="1.2.5"; sha256="0bjfz3bla6pr7wq4mqqcd4gmxqdx32gci4f71arfski31yx8ihlc"; depends=[]; broken = true; }; + Rbgs = derive2 { name="Rbgs"; version="0.2"; sha256="1q0dnbcpgx7x9klr6z33z6g2p9p8mrmhnsqjy6qw15ch720rrgn3"; depends=[imager magrittr rJava]; broken = true; }; Rbitcoin = derive2 { name="Rbitcoin"; version="0.9.2"; sha256="0ndq4kg1jq6h0jxwhpdp8sw1n5shg53lwa1x0bi7rifmy0gnh66f"; depends=[data_table digest RCurl RJSONIO]; broken = true; }; RcmdrPlugin_FuzzyClust = derive2 { name="RcmdrPlugin.FuzzyClust"; version="1.1"; sha256="1lg6k3h4n45s6wjkl3ycwfngfr2i6mkhirifhbazsvv297bg0iba"; depends=[clue doParallel foreach ggplot2 iterators MASS Rcmdr reshape2 tcltk2 tkrplot]; broken = true; }; RcmdrPlugin_IPSUR = derive2 { name="RcmdrPlugin.IPSUR"; version="0.2-1.1"; sha256="0dbdsxdxhxm79cq7hi0rh8qphan73521lmivcnb4ca8g6ha2y32v"; depends=[Rcmdr]; broken = true; }; @@ -19963,7 +20218,6 @@ in with self; { Rdsm = derive2 { name="Rdsm"; version="2.1.1"; sha256="07fc6c2hv0vvg15va552y54cla1mrqsd75w3zh02vc7yd226l4rj"; depends=[bigmemory]; broken = true; }; Rdtq = derive2 { name="Rdtq"; version="0.1"; sha256="114pyf95nl132014ygn84xi41c2zf1ii2wfgd1acwnnmfzvdw24s"; depends=[Matrix Rcpp]; broken = true; }; ReCiPa = derive2 { name="ReCiPa"; version="3.0"; sha256="019vlvgxnqqlwghxygfqggzp2b4x2pqzdrbhaa703zdhm58k0n1g"; depends=[]; broken = true; }; - Rediscover = derive2 { name="Rediscover"; version="0.3.1"; sha256="12cyxw5dmzm3p83dc3gsw9db2xcb16cax8n0gk77bfyc9mcxpggg"; depends=[data_table maftools Matrix matrixStats PoissonBinomial RColorBrewer ShiftConvolvePoibin speedglm]; broken = true; }; RefFreeEWAS = derive2 { name="RefFreeEWAS"; version="2.2"; sha256="1aya34iz5v3xfpj86x9ab998m7fdwl138ly007mgdayacvqi4a6y"; depends=[quadprog]; broken = true; }; RegClust = derive2 { name="RegClust"; version="1.0"; sha256="1d9w74phw4fgafglc18j7dpmln96fvxnf1kdc9zddgj90p8yfx63"; depends=[]; broken = true; }; RelValAnalysis = derive2 { name="RelValAnalysis"; version="1.0"; sha256="1jl1gfj44gfkmc1yp6g5wwn4miydwpvxwrg76rnkv9454zrc5pvp"; depends=[zoo]; broken = true; }; @@ -19976,10 +20230,10 @@ in with self; { RichR = derive2 { name="RichR"; version="1.0.0"; sha256="0z0ri90jqdmw0vwxd1b4wr9if5cgm1gqpf6g9p1fdvncf4sdi9by"; depends=[magrittr metap plyr reshape2]; broken = true; }; RidgeFusion = derive2 { name="RidgeFusion"; version="1.0-3"; sha256="10llmrsfpcqrkcbw7zj44kvfy7ywn9rk49n7zplilz8h94zzcmjv"; depends=[mvtnorm]; broken = true; }; Ridit = derive2 { name="Ridit"; version="1.1"; sha256="02cni6hzf1bsns7vi8vklnhc0pfb5vwqhjnnfnjnnaxpzpsbvdfn"; depends=[]; broken = true; }; + Rip46 = derive2 { name="Rip46"; version="1.0.2"; sha256="0wfp6fm5mgmjqjkn0c5hvjd95yn4zcv0s8xc5294qf5jqxp8b1w7"; depends=[Rcpp]; broken = true; }; RiverLoad = derive2 { name="RiverLoad"; version="1.0.3"; sha256="01nrkj75smnsfrl0x82dif67q9xs15ngksz0p73i7xf6dqprjjcf"; depends=[imputeTS]; broken = true; }; Rlda = derive2 { name="Rlda"; version="0.2.6"; sha256="0i8n01h9072q339p1kiqhcpwphw0d2x6bsszbhgfqc2b160dk2bl"; depends=[coda doParallel foreach gtools Rcpp RcppArmadillo RcppProgress]; broken = true; }; Rmagic = derive2 { name="Rmagic"; version="2.0.3"; sha256="0g2f887v820rjyjzcahfrnjvif8iwbhnfnjpd4ib3d9lps69agx1"; depends=[ggplot2 Matrix reticulate]; broken = true; }; - Rmalschains = derive2 { name="Rmalschains"; version="0.2-9"; sha256="0qm7ccakdsssm3rag3fiz8rpgx58a9jz8m1vzfkg5ks9kc05784a"; depends=[Rcpp]; broken = true; }; RmixmodCombi = derive2 { name="RmixmodCombi"; version="1.0"; sha256="0cwcyclq143938wby0aj265xyib6gbca1br3x09ijliaj3pjgdqi"; depends=[Rcpp Rmixmod]; broken = true; }; RobRSVD = derive2 { name="RobRSVD"; version="1.0"; sha256="07z5fw8j5lq7nyxgkvb9i4iwb5inddz2ib4m2bjx6q4c1ricpqz9"; depends=[]; broken = true; }; Robocoap = derive2 { name="Robocoap"; version="0.1-1"; sha256="0aj6iv85a1zfaknjhrzf6lnf0qn726dvnj4dywg9nii1kkqrkq2w"; depends=[data_table igraph markovchain tm]; broken = true; }; @@ -20007,8 +20261,10 @@ in with self; { SBRect = derive2 { name="SBRect"; version="0.26"; sha256="16g0ciy9q9irypsl8x36i0lavl41j3af13r2si0by8q6wj56pxi4"; depends=[rJava]; broken = true; }; SBSA = derive2 { name="SBSA"; version="0.2.3"; sha256="1v23lzzziyjlvgn5p2n1qcq2zv9hsyz2w15lbnfi5wvinxhlg8sc"; depends=[Rcpp RcppArmadillo]; broken = true; }; SCAT = derive2 { name="SCAT"; version="0.5.0"; sha256="16dh4l5r8b49n68s571npmk14dnnx6y0np7lzvalg61z31zlya29"; depends=[]; broken = true; }; + SCOR = derive2 { name="SCOR"; version="1.1.1"; sha256="0srkn72g1v7hwms68pjmq5sj562blqn27gi628q6q6zlirbmfb9g"; depends=[doParallel foreach iterators]; broken = true; }; SCORER2 = derive2 { name="SCORER2"; version="0.99.0"; sha256="1a28wga69ip9s98ch2dqgl0qkwa3w6frmaqcvhclc360ik813mxq"; depends=[]; broken = true; }; SCPME = derive2 { name="SCPME"; version="1.0"; sha256="0yhsaaa349wbrswcvp7w8c52wzp7rs3528rs4wqa8b3r3fh983mh"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo RcppProgress]; broken = true; }; + SCtools = derive2 { name="SCtools"; version="0.3.2.1"; sha256="0pw0kpqv4hzskfigl7ch509jj2cmp674l9ms2ivbx3sxq9l0hhj1"; depends=[cvTools dplyr furrr future ggplot2 magrittr purrr stringr Synth]; broken = true; }; SDALGCP = derive2 { name="SDALGCP"; version="0.4.0"; sha256="0az11v9dj3pwl5q2kr2apac06b5hg0msi5r17qrcik1d65k18hm0"; depends=[geoR maptools mapview Matrix pdist PrevMap progress raster sp spacetime spatstat spatstat_geom splancs]; broken = true; }; SDD = derive2 { name="SDD"; version="1.2"; sha256="0wzgm1hgjv5s00bpd7j387qbvn5zvyrrd5fr2rgyll4cw9p4sd33"; depends=[Hmisc rgl rpanel sm tseries]; broken = true; }; SDDE = derive2 { name="SDDE"; version="1.0.1"; sha256="14vql1bypn409w9xcx1jdzff6apiagcz2wng3y24h3mk7yjv9bzy"; depends=[doParallel foreach igraph iterators]; broken = true; }; @@ -20043,17 +20299,20 @@ in with self; { STAR = derive2 { name="STAR"; version="0.3-7"; sha256="1g78j4iyh78li1jaa3zz5qv4p41cg0imhmvbfakd34l32ppih4ll"; depends=[codetools gss mgcv R2HTML survival]; broken = true; }; SUE = derive2 { name="SUE"; version="1.0"; sha256="0akv724s84v2zixvwywj1ydfnfvcjnaabv6gm0601nsrh6ij1mi6"; depends=[]; broken = true; }; SVMMatch = derive2 { name="SVMMatch"; version="1.1"; sha256="1ykwrhlid4hs466xh3kv6y2qdhgk0jiglg0l3zwk5qlni6p26zc9"; depends=[Rcpp RcppArmadillo]; broken = true; }; + SamplerCompare = derive2 { name="SamplerCompare"; version="1.3.2"; sha256="09j06ycr749dbr6xbn5pxw7rp1p3cri40z38hf1kp5kvjxkkpy2w"; depends=[mvtnorm]; broken = true; }; ScoreGGUM = derive2 { name="ScoreGGUM"; version="1.0"; sha256="0f7sjfr3a8b8y1n9lrwyiyyljls3rbz84d9s93psi2fnmjj0kvgw"; depends=[]; broken = true; }; SelvarMix = derive2 { name="SelvarMix"; version="1.2.1"; sha256="02d16ffw5syq0d3yiim9jgrjlz99n956zxp23idpsmq6lb2whq66"; depends=[glasso Rcpp RcppArmadillo Rmixmod]; broken = true; }; SemNeT = derive2 { name="SemNeT"; version="1.4.3"; sha256="1qjjbx86sh2gk91bnx0rn3wszlf1w8wxyda5k2mqn4gzgpfplcsp"; depends=[broom car dplyr effects ggplot2 igraph magrittr pbapply philentropy plyr purrr qgraph RColorBrewer scales]; broken = true; }; ShinyImage = derive2 { name="ShinyImage"; version="0.1.0"; sha256="0nhsaq6i9lr8gqpdkahw3qr0c0cb0qwc0nqpk1ism21l6zg6ahc9"; depends=[EBImage R6 shiny shinyjs]; broken = true; }; SimEvolEnzCons = derive2 { name="SimEvolEnzCons"; version="2.0.0"; sha256="0h3j8lp1s3zqb9qgy16gd0rdlbr2g1jqrc4a19zhmix2kygs5012"; depends=[ade4 RColorBrewer rgl scatterplot3d]; broken = true; }; + SimPhe = derive2 { name="SimPhe"; version="0.2.0"; sha256="01kzypahw41jk8s2c92h0k9w32yaicis07wb6k8qlqcmv0zj8xry"; depends=[]; broken = true; }; SimpleTable = derive2 { name="SimpleTable"; version="0.1-2"; sha256="1rkybrp7zlb7cj37799npss1ldic0yf519q5l7a6ikal4yl1afyb"; depends=[hdrcde locfit MCMCpack]; broken = true; }; Simpsons = derive2 { name="Simpsons"; version="0.1.0"; sha256="1pm6wga1yxc35zgz72plzq23d3l4bbzfdvhszdxmkn1pkk64h8ms"; depends=[mclust]; broken = true; }; SmithWilsonYieldCurve = derive2 { name="SmithWilsonYieldCurve"; version="1.0.1"; sha256="0qvhd1dn2wm9gzyp6k7iq057xqpkngkb4cfmvmjqmf0vhysp371w"; depends=[]; broken = true; }; SoDA = derive2 { name="SoDA"; version="1.0-6.1"; sha256="0d3jb1dsg1q06c08ldmhj0q2sb1pc0g08rfal29ddng3b4qm1lhh"; depends=[]; broken = true; }; SocialNetworks = derive2 { name="SocialNetworks"; version="1.1"; sha256="0d868xka6d35i17r28cvm0ya971xk6y1kycsfff0279w27cjd9x0"; depends=[Rcpp]; broken = true; }; SoftRandomForest = derive2 { name="SoftRandomForest"; version="0.1.0"; sha256="1k439hcp53yg6f2x4bgafsri4jjgpva97dphzsdk5icfs5d38bh8"; depends=[boot]; broken = true; }; + Sojourn = derive2 { name="Sojourn"; version="1.1.0"; sha256="0dy3xb6nazify29xir2krj9509bqa68b1jwq3lvvhfakxjqm0j05"; depends=[dplyr lubridate magrittr nnet PAutilities rlang svDialogs zoo]; broken = true; }; SolveRationalMatrixEquation = derive2 { name="SolveRationalMatrixEquation"; version="0.1.0"; sha256="1m0b4sb247k6mlagvs4nj42ga9p48g9736lmhar7v1c5qhi7pw3v"; depends=[]; broken = true; }; SpNetPrep = derive2 { name="SpNetPrep"; version="1.2"; sha256="1jhjyrb0k5z21vn9bc444rxax3lxsyzyhggrcy7zl9ps7p4ra990"; depends=[leaflet maptools prodlim raster rgdal shiny shinythemes sp spatstat spatstat_core spatstat_geom spatstat_linnet]; broken = true; }; SpaDES = derive2 { name="SpaDES"; version="2.0.9"; sha256="11acb05b957qwbii701y1b4lvcnvmiixkrlmqkccc8n9icqq107n"; depends=[quickPlot reproducible SpaDES_core SpaDES_tools]; broken = true; }; @@ -20081,8 +20340,10 @@ in with self; { SurviMChd = derive2 { name="SurviMChd"; version="0.1.1"; sha256="1sj3i950nmam3r70as85kdx6nd88iidb5jpiz2a5a39i5lb7mgf7"; depends=[dplyr ICBayes icenReg R2jags Rdpack readr rjags rlang survival tidyverse]; broken = true; }; SurvivalPath = derive2 { name="SurvivalPath"; version="1.3.2"; sha256="17glrkz63ms76cmg7lfz0nay131ngwxigwfs0rzgfjna9gy06dgi"; depends=[dplyr ggplot2 ggtree Hmisc rms survival survivalROC survminer treeio]; broken = true; }; SyNet = derive2 { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfmrvvy588vxdqy5dr783bpa5dkiw"; depends=[tkrplot]; broken = true; }; + Synth = derive2 { name="Synth"; version="1.1-6"; sha256="0qi8534rw0z20l1m4hhcn2xm16g8rrqfvpy0fs4hik4xc5cjgmbg"; depends=[kernlab LowRankQP optimx rgenoud]; broken = true; }; SynthCast = derive2 { name="SynthCast"; version="0.2.1"; sha256="0gln7x1vlfdnr0qaqgagr93r484hv3dp65n24b3wl3p02msz9bgn"; depends=[dplyr forcats Synth tidyr]; broken = true; }; TBSSurvival = derive2 { name="TBSSurvival"; version="1.3"; sha256="1r87qvnlvc18i12yi25lfpdb8b5p33fywi38hs2xp1y2vbvz5s9b"; depends=[BMS coda mcmc normalp R_utils Rsolnp survival]; broken = true; }; + TCIU = derive2 { name="TCIU"; version="1.2.2"; sha256="1n08jvc60gng3ziisrvgl9kfi55l6mh7bbnwp5mbnnqh0mkdhfv0"; depends=[cubature doParallel dplyr DT extraDistr fancycut fmri foreach forecast geometry ggplot2 ggpubr gridExtra ICSNP MultiwayRegression plotly pracma RColorBrewer reshape2 rrcov scales spatstat_explore spatstat_geom tidyr zoo]; broken = true; }; TDAmapper = derive2 { name="TDAmapper"; version="1.0"; sha256="0cxgr2888v8azgdr3sg4vlcdyivkrxkk6dsp1ahv4frrwvg2z09k"; depends=[]; broken = true; }; TDD = derive2 { name="TDD"; version="0.4"; sha256="193y8brybkjsajrbnlx1sdnw1wyyn9rhlm5wvp4aamqhvi8z13vn"; depends=[pracma RSEIS signal]; broken = true; }; TDMR = derive2 { name="TDMR"; version="2.2"; sha256="19ljgj5iy41m7rrawzkxkln7acydssk8zm05k3sfb483s8zygwiq"; depends=[adabag SPOT testit twiddler]; broken = true; }; @@ -20108,7 +20369,6 @@ in with self; { TTmoment = derive2 { name="TTmoment"; version="1.0"; sha256="0a4rdb4fk1mqnvvz0r15kni0g5vcj4xkkcwwv7c2gxc94xh5i5ih"; depends=[mvtnorm]; broken = true; }; TargomoR = derive2 { name="TargomoR"; version="0.2.0"; sha256="0dzlqv8v36cm5b9hc9am4351nigknq7vr0mki9kzk2979c18if6b"; depends=[geojsonsf httr jsonlite leaflet magrittr sf tibble xml2]; broken = true; }; TauP_R = derive2 { name="TauP.R"; version="1.5"; sha256="02vk9rj8yx4n2pihgk93bs2f9wkpkyfqm2kp7ixj4wpa29a0iq6v"; depends=[]; broken = true; }; - TensorComplete = derive2 { name="TensorComplete"; version="0.1.0"; sha256="06lr0blkf5pv1zwlffn7m0xxscjii4jg930nkzrh2k7dnbka6vsx"; depends=[MASS pracma tensorregress]; broken = true; }; Thinknum = derive2 { name="Thinknum"; version="1.3.0"; sha256="0j48vgr4wsc2chm95aprq0xm0dk720xk5zmiijxasg92sfp0va6n"; depends=[RCurl RJSONIO]; broken = true; }; TickExec = derive2 { name="TickExec"; version="1.1"; sha256="0v0m0wi49yw0ply19vnirl2zwnk61sxalx24l8cadvkssgs13509"; depends=[]; broken = true; }; TiddlyWikiR = derive2 { name="TiddlyWikiR"; version="1.0.1"; sha256="0vwwjdmfc8c0y2gfa8gls1mzvp29y39c9sxryrgpk253jj9px1kr"; depends=[]; broken = true; }; @@ -20119,9 +20379,9 @@ in with self; { ToxicR = derive2 { name="ToxicR"; version="22.8.1.0.3"; sha256="0sc7i3jzqhjwhcz83p7vgjmlpz4f27k0phbi2q5c8gxcnkzbffwp"; depends=[coda doBy dplyr forcats ggplot2 ggridges multcomp Rcpp RcppEigen RcppGSL scales shiny tidyverse]; broken = true; }; TreePar = derive2 { name="TreePar"; version="3.3"; sha256="1sm518b1b4b1p0n5979qzvi2nacxpp3znbg9n75pf2a8z8wy6p4l"; depends=[ape deSolve Matrix subplex TreeSim]; broken = true; }; Tsphere = derive2 { name="Tsphere"; version="1.0"; sha256="0xgxw2hfj40k5s0b54dcmz7savl8wy4midmmgc7lq4pyb8vd58xx"; depends=[glasso rms]; broken = true; }; - TukeyRegion = derive2 { name="TukeyRegion"; version="0.1.5.5"; sha256="06w1wwrpxn2kglbx2s7i6gcdzmy4g17rsqxrf7k0wjvzayfday88"; depends=[bfp BH ddalpha MASS Rcpp rgl Rglpk]; broken = true; }; TwoCop = derive2 { name="TwoCop"; version="1.0"; sha256="1ycxq8vbp68z82r2dfg2wkc9zk3bn33d94xay20g2p55lnzl2ifd"; depends=[]; broken = true; }; - UComp = derive2 { name="UComp"; version="2.2.3"; sha256="11vhkpz1nvqfldksaa8rdhpn0f05x4h2dfpaabr0w274rwad93ap"; depends=[Rcpp RcppArmadillo]; broken = true; }; + TwoRegression = derive2 { name="TwoRegression"; version="1.0.0"; sha256="0mpgdz7swrzabpf835pawlwvbzqajc329whcsxddwq4l6c71sb11"; depends=[dplyr ggplot2 gridExtra lubridate magrittr PAutilities pROC RcppRoll rlang tidyr]; broken = true; }; + TwoWayFEWeights = derive2 { name="TwoWayFEWeights"; version="0.1.0"; sha256="0zjbh24jm77vj62rw433dqy57m0hciaw1l2l7x6hpzn34iggdwwv"; depends=[dplyr estimatr fixest rlang stringr]; broken = true; }; UNF = derive2 { name="UNF"; version="2.0.8"; sha256="1gag7yqh5zs4azds0axlkpksymakw19s4n50pnhx7k6m9hgcbdgh"; depends=[base64enc digest]; broken = true; }; USAboundaries = derive2 { name="USAboundaries"; version="0.4.0"; sha256="0wwaywg01vz8hmwm58bnf86m8yqivi53bww5y3ycg891msnjwrgr"; depends=[]; broken = true; }; UScancer = derive2 { name="UScancer"; version="0.1-2"; sha256="0p1kxw1phqq598ljk3njznc9kmgscc8gmwdrvx1scba9rr6n61kl"; depends=[rgdal]; broken = true; }; @@ -20135,7 +20395,6 @@ in with self; { VBTree = derive2 { name="VBTree"; version="0.1.0"; sha256="0g0lyvclnfmd3zc8yhcibhli0hyxrba6wb3hx039fsg80q7y02h4"; depends=[tensorA]; broken = true; }; VIF = derive2 { name="VIF"; version="1.0"; sha256="0yvg6ikrcs7mhg0pavhcywrfysv7ylvnhxpc5sam86dbp69flx9x"; depends=[]; broken = true; }; VNM = derive2 { name="VNM"; version="7.1"; sha256="19qglcibb7r6jjz0n0piklwfv3hi4jphd6vmyfbm0ccjjkmn5nin"; depends=[Rcpp]; broken = true; }; - VaRES = derive2 { name="VaRES"; version="1.0.1"; sha256="0di5qadkn9m70l050a5nbpxmsg1dl1ljg6afircsp1wgiivc3bji"; depends=[]; broken = true; }; VarBundle = derive2 { name="VarBundle"; version="0.3.0"; sha256="0jfx9gkb3f29lgc0nrz3xc7m2ham0scx9lay7x5a6ira7crga6cr"; depends=[crayon dplyr glue magrittr R6 stringr tibble]; broken = true; }; VarSwapPrice = derive2 { name="VarSwapPrice"; version="1.0"; sha256="12q2wp2cqi9q47mzbb7sc250zkjqkhs9z0h93ik0h63dv339abgj"; depends=[]; broken = true; }; VariantScan = derive2 { name="VariantScan"; version="1.1.9"; sha256="0mdpj3a39m4gib4a25g3kxwmc82jn6qpi0r6sbgm0aqysv2wisdm"; depends=[caret gam ModelMetrics SNPRelate]; broken = true; }; @@ -20148,7 +20407,6 @@ in with self; { WLinfer = derive2 { name="WLinfer"; version="1.2.0"; sha256="1d4x3w5mamwk7binjr45s62zd7lvxw3abadw22084p10kw7lwfk7"; depends=[bbmle boot cubature goftest LindleyR nleqslv pracma]; broken = true; }; WLogit = derive2 { name="WLogit"; version="1.0"; sha256="0xjzqc5kzbcmfcljvkxx3qxhlin8hvg8kyka9g7h3clia1ia2xaz"; depends=[corpcor cvCovEst genlasso ggplot2 glmnet MASS Matrix tibble]; broken = true; }; WMDB = derive2 { name="WMDB"; version="1.0"; sha256="10wdjy3g2qg975yf1dhy09w9b8rs3w6iszhbzqx9igfqvi8isrr1"; depends=[]; broken = true; }; - WeightedPortTest = derive2 { name="WeightedPortTest"; version="1.0"; sha256="007v3w9ssiv2sds7sikpal27g6pxwxhs7bvcyw6kr0vg8gvlbi8h"; depends=[]; broken = true; }; WilcoxCV = derive2 { name="WilcoxCV"; version="1.0-2"; sha256="1kbb7ikgnlxybmvqrbn4cd8xnqrkwipk4xd6yja1xsi39a109xzl"; depends=[]; broken = true; }; XHWE = derive2 { name="XHWE"; version="1.0"; sha256="1ca8y9q3623d0vn91g62nrqf3pkbcbkpclmddw5byd37sdrgsi5l"; depends=[]; broken = true; }; XPolaris = derive2 { name="XPolaris"; version="1.0.2"; sha256="1l05svscgkv9bzkawi2kp9zhchrhxxma3271b828j34pkrnnmq5m"; depends=[curl dplyr ggplot2 httr magrittr purrr raster sf tidyr]; broken = true; }; @@ -20167,7 +20425,6 @@ in with self; { abcdeFBA = derive2 { name="abcdeFBA"; version="0.4"; sha256="1rxjripy8v6bxi25vdfjnbk24zkmf752qbl73cin6nvnqflwxkx4"; depends=[corrplot lattice rgl Rglpk]; broken = true; }; abf2 = derive2 { name="abf2"; version="0.7-1"; sha256="0d65mc1w4pbiv7xaqzdlw1bfsxf25587rv597hh41vs0j0zlfpxx"; depends=[]; broken = true; }; acmeR = derive2 { name="acmeR"; version="1.1.0"; sha256="000b2hqlhj93958nddw0fqb15ahigs08najv2miivym046x04mf7"; depends=[foreign]; broken = true; }; - activatr = derive2 { name="activatr"; version="0.1.0"; sha256="0c0sn0b5w1k7kgrx8b6vanamlxsr9nqvkwhm0d8imghq8wl90h43"; depends=[dplyr geosphere ggmap glue httr lubridate magrittr rlang tibble timetk xml2]; broken = true; }; activityCounts = derive2 { name="activityCounts"; version="0.1.2"; sha256="0zgxr2sk3a8kmygfxx1p5hnrfwdkxx7php6jlrhm8wv6052ck8jz"; depends=[lubridate magrittr seewave signal tibble]; broken = true; }; adace = derive2 { name="adace"; version="1.0.1"; sha256="1zkvfbvqwxh4k5a0l06khdblm16q7knfcrxfzpmck8053z7kilgr"; depends=[pracma reshape2]; broken = true; }; adapt4pv = derive2 { name="adapt4pv"; version="0.2-2"; sha256="08zgzidw0wmpvhzsn4h8yhzgc45zh16grjp4y8mcc9lhk7pikhy5"; depends=[doParallel foreach glmnet Matrix speedglm xgboost]; broken = true; }; @@ -20176,6 +20433,7 @@ in with self; { adoption = derive2 { name="adoption"; version="0.6.4"; sha256="1xjkvj1ys2xmjgswqfsrry27zyqcc9hk9khl0j4s72gcc8az8sz6"; depends=[quadprog RandomFieldsUtils tkrplot]; broken = true; }; advclust = derive2 { name="advclust"; version="0.4"; sha256="1g8a8q4zh6d4152jb66fh7wj7k6ks5k4kfcazzw70jdn10yi6b38"; depends=[clue ggplot2 knitr MASS reshape2]; broken = true; }; aemo = derive2 { name="aemo"; version="0.3.0"; sha256="108scwyf0dyvn969cks3ikbj2pf2g4dw051asahx26pl0ggw7ijw"; depends=[assertthat dplyr lubridate stringr]; broken = true; }; + agroclim = derive2 { name="agroclim"; version="0.3.0"; sha256="06mv18a73dpcdw2y2df83rx9kfxsd5x2zv6j5md3yzm9ij3rylvx"; depends=[abind cowplot easyNCDF ggforce ggplot2 ggpubr gtable multiApply ncdf4 raster reshape sp zoo]; broken = true; }; agsemisc = derive2 { name="agsemisc"; version="1.3-1"; sha256="1905q35jgjhghlawql43yh296kbpysp927x3hj750yshz5zayzyr"; depends=[lattice MASS]; broken = true; }; akmeans = derive2 { name="akmeans"; version="1.1"; sha256="1nqbxbx583n0h2zmpy002rlmr6j86j6bg76xj5c69brrh59dpyw1"; depends=[]; broken = true; }; akmedoids = derive2 { name="akmedoids"; version="1.3.0"; sha256="19d9fh1cygn04riwc7y7lzdncyxki9rzikf9f5m96vp0y687z2ka"; depends=[clusterCrit dplyr ggplot2 Hmisc kml signal]; broken = true; }; @@ -20184,7 +20442,6 @@ in with self; { amber = derive2 { name="amber"; version="1.0.3"; sha256="0kc7g5rb0wrs1id1k0qay56063gpffwvcll38983b1l3k215mxiv"; depends=[classInt doParallel foreach Hmisc latex2exp ncdf4 raster rgdal rgeos scico sp viridis xtable]; broken = true; }; ambiorix = derive2 { name="ambiorix"; version="2.1.0"; sha256="1831i5fv966cghp5xgq71wqzldlajyjj2p4nkhbw007w2dcn0y21"; depends=[assertthat cli fs glue httpuv jsonlite log promises websocket]; broken = true; }; aml = derive2 { name="aml"; version="0.1-1"; sha256="09xxlxp784wlb561apns3j8f2h9pfk497cy5pk8wr4hhqqv4d3al"; depends=[lars]; broken = true; }; - ammistability = derive2 { name="ammistability"; version="0.1.3"; sha256="066d5k14mi9kpnazbwvl33p9v18igryxzyp6pn3hw4zs44righ3y"; depends=[agricolae ggcorrplot ggplot2 mathjaxr Rdpack reshape2]; broken = true; }; analogueExtra = derive2 { name="analogueExtra"; version="0.1-1"; sha256="1s3qs10hf6hkna0bicid1mc8x8r449bl93xpgyw6lnsjgh2yx62c"; depends=[analogue rgl vegan3d]; broken = true; }; analysisPipelines = derive2 { name="analysisPipelines"; version="1.0.2"; sha256="1rxam52wrbcjrvixb35b9ha37i8a0fczby49vmgzpnrbvkc50ldx"; depends=[dplyr futile_logger ggplot2 magrittr pipeR proto purrr RCurl rlang]; broken = true; }; analyz = derive2 { name="analyz"; version="1.4"; sha256="0qdh1gld2dkl0krbhm2vcqg8dfs03dn51rclgsw02554s06dlgxw"; depends=[]; broken = true; }; @@ -20211,6 +20468,7 @@ in with self; { audiolyzR = derive2 { name="audiolyzR"; version="0.4-9"; sha256="09jsrjy15vcn6da0kgk06ghayyrf3s853gqv8qdawg745ky2hbgi"; depends=[hexbin plotrix RJSONIO]; broken = true; }; aurelius = derive2 { name="aurelius"; version="0.8.4"; sha256="00bpf9sggvnajpmg3zsdgfjinkb6wbrcf1ris7qfhh1rp5rz4m4m"; depends=[gbm glmnet jsonlite]; broken = true; }; aurin = derive2 { name="aurin"; version="0.6.0"; sha256="0nh6jy0pkwfxzcxz1xcdcnqd9pkrddmdmfb2pjalfmp04z66h6dv"; depends=[checkmate cli glue httr jsonlite magrittr ows4R R6 sf stringr]; broken = true; }; + autoMrP = derive2 { name="autoMrP"; version="1.0.2"; sha256="11r849hglwgbqiq34q7xd3cdli5qrbqh90faj7pdm09sjkk4mn37"; depends=[doParallel doRNG dplyr e1071 EBMAforecast forcats foreach gbm ggplot2 glmmLasso knitr lme4 purrr R_rsp rlang tibble tidyr]; broken = true; }; autohd = derive2 { name="autohd"; version="0.1.0"; sha256="14wyiqhmbp8v52s1p5svvcjpwg8pwqrqh3zzm17blcl2hr4p9cy8"; depends=[broom coxme hdbm Hmisc ICBayes icenReg missForest mlr3 Rdpack rjags schoolmath survival SurvRegCensCov tibble usethis]; broken = true; }; automultinomial = derive2 { name="automultinomial"; version="2.0.0"; sha256="04rjg3xjlhnkchzvdxqm762z5abm81s5b9czgzmli30zh07bf3fd"; depends=[igraph Matrix numDeriv]; broken = true; }; avfintools = derive2 { name="avfintools"; version="0.1.0"; sha256="1v04z9qr80zikjb5q0h9796sgnmw43l5ygxs99gsgsghlyj9nrla"; depends=[alphavantager dplyr ggplot2 lubridate plotly tibble]; broken = true; }; @@ -20221,7 +20479,6 @@ in with self; { baggedcv = derive2 { name="baggedcv"; version="1.0"; sha256="1rqs4sm6g1anck5s2dxlm1vcmylpphcbs2dpvf1sjki5lrzdq9z4"; depends=[doParallel foreach kedd mclust]; broken = true; }; baggingbwsel = derive2 { name="baggingbwsel"; version="1.0"; sha256="0khvkxml4nwkahgl5ijdv0bjgwabmznzq99p71iw26ck808hafkl"; depends=[doParallel foreach kedd mclust misc3d nor1mix Rcpp rgl rpanel sm tkrplot]; broken = true; }; baker = derive2 { name="baker"; version="1.0.0"; sha256="166j6b2j3r0apsnvcnfycxhf1kv4nblscmnjdl2xsw5wwrbx677f"; depends=[abind binom coda ggplot2 ggpubr gridExtra lubridate mgcv mvbutils R2jags reshape2 rjags robCompositions shinydashboard shinyFiles]; broken = true; }; - bark = derive2 { name="bark"; version="1.0.1"; sha256="0kg4jfb19bbcls3b29kj695sjy9vdd8ampy5gp38y4g787gvn1ym"; depends=[]; broken = true; }; barplot3d = derive2 { name="barplot3d"; version="1.0.1"; sha256="182kpiknv3id1bsgcc6b3ahbxmm8x3lxcpf1r6rckpr3s0whfx3g"; depends=[rgl]; broken = true; }; baseflow = derive2 { name="baseflow"; version="0.13.2"; sha256="02ygx32dfszk66f33wfszkvwi51v8zw2s45y9nlrgfws9rlpzll2"; depends=[airGR]; broken = true; }; basicTrendline = derive2 { name="basicTrendline"; version="2.0.5"; sha256="0402nvm3i32sx3m3c7r74iaj22h570v819yiwkraicjpmg55dghi"; depends=[investr scales]; broken = true; }; @@ -20232,12 +20489,15 @@ in with self; { bbefkr = derive2 { name="bbefkr"; version="4.2"; sha256="1wjx652w3p41sq71a2zdzmb7frjxm6xvcgrc2ark2spwb0lbjjw6"; depends=[]; broken = true; }; bbemkr = derive2 { name="bbemkr"; version="2.0"; sha256="015c57s8mpimm82nddnh382wlkisxgdmc2hvp7k38pcnqxc5gb5q"; depends=[MASS]; broken = true; }; bbo = derive2 { name="bbo"; version="0.2"; sha256="19xrbla3bb3csg3gjjrpkgyr379zfwyh293bcrcd6j8rnm6g4i01"; depends=[]; broken = true; }; + bbricks = derive2 { name="bbricks"; version="0.1.4"; sha256="1hv4hvnns9vgl6c3n7kg3g9mfcp26ksps29hdl5nwi28cgkx80w2"; depends=[]; broken = true; }; bcTSNE = derive2 { name="bcTSNE"; version="0.11.1"; sha256="1j7aab9j30iypbjvid3dfg8rnz69i83k59ympkycv9k6xwpi330p"; depends=[RSpectra Rtsne splatter]; broken = true; }; bcc = derive2 { name="bcc"; version="1.3.1"; sha256="0ac0wasdifd0v47r9sxrsix5hv7masiphn6dyxpqdrd11z7iimgz"; depends=[qcc]; broken = true; }; + bcf = derive2 { name="bcf"; version="1.3.1"; sha256="04vjvzh8y1dfk6ms5zwbylbfalwngvyjbjcszx26v2fakdk990p7"; depends=[Rcpp RcppArmadillo]; broken = true; }; bcpmeta = derive2 { name="bcpmeta"; version="1.0"; sha256="02fw1qz9cvr7pvmcng7qg7p04wxxpmvb2s8p78f52w4bf694iqhl"; depends=[mvtnorm]; broken = true; }; - bcv = derive2 { name="bcv"; version="1.0.1.4"; sha256="1iln1blr2sdjjv66g73jkj26h1kzfs2sfvw5k7b76mgc0703k45s"; depends=[]; broken = true; }; + bda = derive2 { name="bda"; version="15.2.5"; sha256="19m7xrsckw0lncmi0qsmy194f2c9lmi1vac37h9jfvkb3i30fx20"; depends=[boot]; broken = true; }; bdynsys = derive2 { name="bdynsys"; version="1.3"; sha256="07gfyp0qwq9y1cnh7lhcz7q0b1s51cjwlbpll50l2cza2dszmf29"; depends=[caTools deSolve Formula Hmisc MASS matrixStats plm pracma]; broken = true; }; beadarrayFilter = derive2 { name="beadarrayFilter"; version="1.1.0"; sha256="044dq5irc00v2f2gjz0vb69w7q7b84lppc55ganabdv4f0dxdblc"; depends=[beadarray RColorBrewer]; broken = true; }; + beadplexr = derive2 { name="beadplexr"; version="0.4.1"; sha256="1n37qk4p2kgcrb2w4xmgnrgibjv0pdmlzd1y0c1z6njszg2livgz"; depends=[cluster dplyr drc fpc ggplot2 magrittr mclust purrr raster rlang tibble tidyr yaml]; broken = true; }; benchden = derive2 { name="benchden"; version="1.0.5"; sha256="1cwcgcm660k8rc8cpd9sfpzz66r55b4f4hcjc0hznpml35015zla"; depends=[]; broken = true; }; betaboost = derive2 { name="betaboost"; version="1.0.1"; sha256="1zdyzxl2kp2i5lkiz280wz4av9wqklbn25zmq6n4yb6a579yjfn8"; depends=[gamboostLSS mboost]; broken = true; }; betafam = derive2 { name="betafam"; version="1.0"; sha256="1nf5509alqnr5qpva36f1wb7rdnc084p170h91jv89xvzsidqxca"; depends=[]; broken = true; }; @@ -20245,7 +20505,6 @@ in with self; { bettermc = derive2 { name="bettermc"; version="1.1.2"; sha256="1g264b21kh5kf0v5qk09gf3ya0amblwnqlpw93h6g0k0dd3vks0h"; depends=[checkmate]; broken = true; }; biasbetareg = derive2 { name="biasbetareg"; version="1.0"; sha256="1562zdin0y5mrp36ih11ir3h9cv49cx1l98chxd89fkj8x3c1fbg"; depends=[betareg]; broken = true; }; biclique = derive2 { name="biclique"; version="1.0.5"; sha256="1fdf2r1jc2x8yw0fcw7yyjdxz4b870w6y7mr68qixqxwpl6943zq"; depends=[]; broken = true; }; - bigstep = derive2 { name="bigstep"; version="1.0.3"; sha256="0ygp1vljqqn5vzpjxlv9d6fxxv3bi2kfyqfs1gf0jgxwb9417b82"; depends=[bigmemory magrittr matrixStats R_utils RcppEigen speedglm]; broken = true; }; bimetallic = derive2 { name="bimetallic"; version="1.0"; sha256="181qi4dr0zc7x6wziq7jdc1his20jmprfpq3hrfm56fr5n1sj8wl"; depends=[]; broken = true; }; bimixt = derive2 { name="bimixt"; version="1.0"; sha256="0nhszpzjqy8z3vngl5jdzqxzshnn92wgi0ci5n3n5kzi24xkfrzc"; depends=[pROC]; broken = true; }; binaryLogic = derive2 { name="binaryLogic"; version="0.3.9"; sha256="19ig9qgjjnivfihjy41pc13qlrb95679mmk4zks5lbbri8qi4qxj"; depends=[]; broken = true; }; @@ -20253,11 +20512,12 @@ in with self; { binomialMix = derive2 { name="binomialMix"; version="1.0.1"; sha256="1ak3h0lgjmrv9miwn7fl6jvcp8xdld53swjz71q67q999s42np0m"; depends=[dplyr gmp lubridate MASS rlang Rmpfr stringr]; broken = true; }; binomialcftp = derive2 { name="binomialcftp"; version="1.0"; sha256="00c7ymlxk1xnx3x1814x7bcyir7q5sy4rb82dcpzf2bdly4xa1qr"; depends=[]; broken = true; }; binomlogit = derive2 { name="binomlogit"; version="1.2"; sha256="1njz1g9sciwa8q6h0zd8iw45vg3i1fwcvicj5y8srpk8wqw3qp7k"; depends=[]; broken = true; }; + biokNN = derive2 { name="biokNN"; version="0.1.0"; sha256="113lynbxmv88ycvbsq9drn2f75md7yajhicfw8qd8l6lawiq1fqc"; depends=[cluster desc dplyr ggplot2 lme4 magrittr mice mitml tidyr]; broken = true; }; bioset = derive2 { name="bioset"; version="0.2.3"; sha256="15vchim8cim42j1if0jars696rh50vmbggr9748q321f6ngm1w1i"; depends=[dplyr magrittr rlang tibble tidyr]; broken = true; }; bisect = derive2 { name="bisect"; version="0.9.0"; sha256="1dr95gnc9rb3i8603wspf0hznmvk5akk46nyf1bhv88mjz2i5q77"; depends=[]; broken = true; }; bitsqueezr = derive2 { name="bitsqueezr"; version="0.1.1"; sha256="0dy180r9cclq46mh0fzc68p5zm9x2z5pa8ajgsk7qycdkyw5v829"; depends=[]; broken = true; }; bivquant = derive2 { name="bivquant"; version="0.1"; sha256="05dn4qik2dvmgqc2613vddh312bqhza1vnf94an75888gxri5h03"; depends=[copula cubature lpSolve MASS mvtnorm regpro]; broken = true; }; - blaster = derive2 { name="blaster"; version="1.0.4"; sha256="0y2vdksmy1xngqvf7wxy5yf58830sm0bi82vn02yba1x6345ghjr"; depends=[Rcpp]; broken = true; }; + bjscrapeR = derive2 { name="bjscrapeR"; version="0.1.0"; sha256="18chbgiwify272iqf0w4vsqh73wbk12d8m2awc5hbnfqblz3phwd"; depends=[dplyr glue readr tibble]; broken = true; }; blin = derive2 { name="blin"; version="0.0.1"; sha256="1h94azm7gli9i4v3li5c1p36p3rkcj2p5j6rqzlzf0pcqs0bsc09"; depends=[abind glmnet MASS Matrix mvtnorm]; broken = true; }; blockRAR = derive2 { name="blockRAR"; version="1.0.2"; sha256="1d9izlcgz85kcz1sh11mcxq96qh0cwv6638jha851h2f4lnc8aa4"; depends=[arm dplyr ldbounds magrittr tibble]; broken = true; }; blockcpd = derive2 { name="blockcpd"; version="1.0.0"; sha256="1p3ghk7jbi5cc0qkhc83j8sb2pa84h8rqhazlihmbs8ag92w6gdd"; depends=[Rcpp RcppArmadillo]; broken = true; }; @@ -20267,6 +20527,7 @@ in with self; { bmk = derive2 { name="bmk"; version="1.0"; sha256="1wxkrlrhmsxsiraj8nyiax9bqs834ln2swykmpf40wxspkykgfdq"; depends=[coda functional plyr]; broken = true; }; bmmix = derive2 { name="bmmix"; version="0.1-2"; sha256="00php2pgpnm9n0mnamchi6a3dgaa97kdz2ynivrf38s0vca7fqx8"; depends=[ggplot2 reshape2]; broken = true; }; bmotif = derive2 { name="bmotif"; version="2.0.2"; sha256="1zy153z7kasfivj0mvrkyn96s0sgdp34w4pdjpcvfnym3lr02f0m"; depends=[gtools Rcpp reshape2 tensor]; broken = true; }; + bmrm = derive2 { name="bmrm"; version="4.1"; sha256="1brdd5mhr5282wkdc62lgsqcxw077p69rknjk7fjcs282ahcik2s"; depends=[LowRankQP lpSolve matrixStats Rcpp]; broken = true; }; bnormnlr = derive2 { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; broken = true; }; bnpmr = derive2 { name="bnpmr"; version="1.2"; sha256="0vpqhs1h2mphn9w5yngb7lxvmzrhn7mkj7ca6hykhhg48s2ra98g"; depends=[]; broken = true; }; boomer = derive2 { name="boomer"; version="0.1.1"; sha256="16gwdvcp8bz5bgmvxsvc9iyz2a6mpwf5vgilc1lhf9l4n0l1m685"; depends=[crayon pryr rlang rstudioapi styler withr]; broken = true; }; @@ -20278,17 +20539,18 @@ in with self; { bpcs = derive2 { name="bpcs"; version="1.0.0"; sha256="0jsy2l1qnzr8098614d6pj7rydf6b9s7kxrkahyzq82ivby9hj5m"; depends=[badger BH coda dplyr ggplot2 gtools HDInterval knitr loo magrittr Rcpp RcppEigen RcppParallel rlang rstan rstantools shinystan StanHeaders stringr tibble tidyr tidyselect]; broken = true; }; breakage = derive2 { name="breakage"; version="1.1-1"; sha256="0zjazyz92criiimpz4wyd4hd8ccspvh3hhqpd4qkfdzdf9wp3kns"; depends=[Imap]; broken = true; }; brickr = derive2 { name="brickr"; version="0.3.5"; sha256="1a6yxhq2zly3i3gs4dd19xhyrin1qaxdr7x3a887j7zbcj0j4z9q"; depends=[colorspace dplyr farver ggplot2 magrittr purrr rgl scales tidyr]; broken = true; }; + brolgar = derive2 { name="brolgar"; version="1.0.0"; sha256="0jw0cnszwdcj6jdxpr17bq338jaxihaacg62rr3n1ayig54bgbyn"; depends=[dplyr fabletools ggplot2 glue magrittr purrr rlang tibble tidyr tsibble vctrs]; broken = true; }; broomExtra = derive2 { name="broomExtra"; version="4.3.2"; sha256="02ijhqgymm8nv40fy4j6psqkhak3dfwz8i5k0ay3g7aic49lzcbf"; depends=[broom broom_mixed dplyr magrittr parameters performance rlang]; broken = true; }; brranching = derive2 { name="brranching"; version="0.7.0"; sha256="06jy3qhbr0v4m1j4j8a7fb7ic59sx4zhlsm1yb3g6rdwc00d67wj"; depends=[ape conditionz crul curl phylocomr phytools taxize]; broken = true; }; bsem = derive2 { name="bsem"; version="1.0.0"; sha256="1h4wsib6ppqj8nbvj4pzkm04bzrdkg9l7xfmzzmld9cswai4iw52"; depends=[BH coda DiagrammeR lattice magrittr Rcpp RcppEigen rstan rstantools shiny StanHeaders viridis visNetwork]; broken = true; }; - btergm = derive2 { name="btergm"; version="1.10.6"; sha256="19iil8dfrxjwm3gmrhlbiacv9fhicng9x37bxf04i53lx6fw7yar"; depends=[boot coda ergm igraph Matrix network ROCR sna speedglm statnet_common]; broken = true; }; buffeRs = derive2 { name="buffeRs"; version="0.31"; sha256="1yr2bg2cyl8sm4g7jrjw9apj5lqhbqscw5mshs8r8niz0fkyq6lg"; depends=[sf]; broken = true; }; bvenn = derive2 { name="bvenn"; version="0.1"; sha256="1xrya49w5bd2b7plfxpqla60b2828rkm0rjmc4qnqzvrahsbal0y"; depends=[]; broken = true; }; + c2d4u_tools = derive2 { name="c2d4u.tools"; version="1.2"; sha256="1ssp3sk5kml8in1ggnir77cq2kpmdmrhjblvw67ydxp22sqw7vwr"; depends=[]; broken = true; }; cRegulome = derive2 { name="cRegulome"; version="0.3.2"; sha256="0cvxad73l85zsgqmis5p24v71kkzi784b8v5z07f0dh9yp41p96q"; depends=[DBI ggplot2 ggridges httr igraph R_utils RSQLite UpSetR VennDiagram]; broken = true; }; caMST = derive2 { name="caMST"; version="0.1.6"; sha256="0zg4j81ikm8izgvn4p80z2bxrrg4qlccq4cs3pn2iwy25d6aiknn"; depends=[catR diagram mstR]; broken = true; }; cairoDevice = derive2 { name="cairoDevice"; version="2.28.2.1"; sha256="040gd6cyaabdi0lhfdba4isqjihj28hdxm7mc129nl863pxkx6qm"; depends=[]; broken = true; }; caliver = derive2 { name="caliver"; version="2.0.0"; sha256="04qa3zrk70c8ak70djfh23jyfxs8293s8wzkk6cs0nyrknhaxzzj"; depends=[ggplot2 lubridate ncdf4 raster rworldmap]; broken = true; }; - campsis = derive2 { name="campsis"; version="1.3.0"; sha256="0wl8p64k8ihqrshshljbvxxhlhi75p8n2rw0xg864ix8hh2b7v19"; depends=[assertthat campsismod digest dplyr ggplot2 MASS plyr progress purrr rlang tibble tidyr]; broken = true; }; + canadacovid = derive2 { name="canadacovid"; version="0.3.4"; sha256="1hxcz3bk0p063cidj19zzacvxarpracnzglmb1212b2jx9w4i3gw"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang stringr tibble tidyr tidyselect]; broken = true; }; capwire = derive2 { name="capwire"; version="1.1.4"; sha256="18a3dnbgr55yjdk6pd7agmb48lsiqjpd7fm64dr1si6rpgpl4i9c"; depends=[]; broken = true; }; cartools = derive2 { name="cartools"; version="0.1.0"; sha256="0gc5502373f0c2m2rh6awvyfqrg1wx1f341dm2byk9znba887lgs"; depends=[animation devtools dplyr gapminder ggplot2 knitr rlist rmarkdown roxygen2 sde shiny tidyverse usethis]; broken = true; }; carx = derive2 { name="carx"; version="0.7.1"; sha256="1qyqsj6pfzzqyaj6076zvgcimhl4cll6sxfb6aigm02rwfkq5gvh"; depends=[matrixStats mvtnorm nlme tmvtnorm xts zoo]; broken = true; }; @@ -20314,7 +20576,8 @@ in with self; { cecs = derive2 { name="cecs"; version="0.2.4"; sha256="1fm1yrb8kd7f97kgsp5wfp02fspzvndki2aqsfcwb0rlrlckflzf"; depends=[cec2013 stringr]; broken = true; }; ced = derive2 { name="ced"; version="1.0.1"; sha256="0xrf3y1cr4dylhh2xr1gggnwdwn7riz37g6yw55hyryg03hxkms6"; depends=[Rcpp]; broken = true; }; censNID = derive2 { name="censNID"; version="0-0-1"; sha256="1ij5ci6nkqf0rq51vyh4jw5sr3y46yndfkjmwl78ppdj66axxir5"; depends=[]; broken = true; }; - censo2017 = derive2 { name="censo2017"; version="0.6.1"; sha256="02q25kxv6kxj3634xk7vd3mwa8qvnmagwyh020z9yq6l6qfn2s6b"; depends=[cli crayon DBI duckdb httr purrr rstudioapi tibble]; broken = true; }; + censusGeography = derive2 { name="censusGeography"; version="0.1.0"; sha256="1ncgd05ml571g3vy1g4p5xxg2bm08hbb6d5r3hpz7frn7w3l8l1d"; depends=[qdapTools]; broken = true; }; + censusxy = derive2 { name="censusxy"; version="1.1.1"; sha256="1gdry73xzcixa3hfchlf2xmmlnhk1vsg7k3axvynvlr493i7qf2a"; depends=[doParallel foreach httr]; broken = true; }; cernn = derive2 { name="cernn"; version="0.1"; sha256="0gz2x20pgsiq85hwkkpg4s1cdlw9plygx0446djc7qsymp469p2w"; depends=[]; broken = true; }; cgdsr = derive2 { name="cgdsr"; version="1.3.0"; sha256="07yc819hkabpzzh0g0cbqza6bcfy67b2marrzz1lj97f9iba78ja"; depends=[httr R_methodsS3 R_oo]; broken = true; }; cghRA = derive2 { name="cghRA"; version="1.6.0"; sha256="16dlw27s8wckc75xcwc2g74pw6bar0y0ii3h53w1hql05d4f7sb8"; depends=[DNAcopy Rgb]; broken = true; }; @@ -20325,7 +20588,6 @@ in with self; { cheatR = derive2 { name="cheatR"; version="1.2.1"; sha256="0ph7bw2b3frmq6z7qb99pds8j81dbx0bxkbhb55mczqa7n0k50hy"; depends=[ngram purrr R_utils textreadr]; broken = true; }; cheb = derive2 { name="cheb"; version="0.3"; sha256="0vqkdx7i40w493vr7xywjypr398rjzdk5g410m1yi95cy1nk4mc7"; depends=[]; broken = true; }; chebpol = derive2 { name="chebpol"; version="2.1-2"; sha256="126cgqnl9jy332q0ywg9dr11d4q1aichwwakb1xcrxrqw2j26zzi"; depends=[geometry]; broken = true; }; - cheem = derive2 { name="cheem"; version="0.2.0"; sha256="0l8mbhl8jhwsikhy2nakdp21zz9k71fanhznjcqlpy7m7aqagp7i"; depends=[data_table DT ggplot2 magrittr plotly Rcpp shiny shinycssloaders shinythemes spinifex]; broken = true; }; chessR = derive2 { name="chessR"; version="1.5.2"; sha256="1czv5y4ybbi15b87959vri25fy31yv2l2cdd5q6p9fw291kj1qnp"; depends=[curl dplyr httr jsonlite lubridate magrittr purrr rlang rvest stringr tidyr xml2]; broken = true; }; chi2x3way = derive2 { name="chi2x3way"; version="1.1"; sha256="13qc8sigiw4gcxk8y50q7yfgzbssjyl41fizzjqzcp3p14kpsmzw"; depends=[]; broken = true; }; chickn = derive2 { name="chickn"; version="1.2.3"; sha256="1d3xl2pigan6vb29nk2ks04dsl5vy16cv9z7miskmhcqcx2wm1qb"; depends=[bigstatsr doParallel doRNG foreach MASS mvnfast nloptr pracma Rcpp RcppArmadillo RcppParallel Rdpack rmio zipfR]; broken = true; }; @@ -20337,18 +20599,22 @@ in with self; { citbcmst = derive2 { name="citbcmst"; version="1.0.4"; sha256="1zkd117h9nahwbg5z6byw2grg5n3l0kyvv2ifrkww7ar30a2yikl"; depends=[]; broken = true; }; citccmst = derive2 { name="citccmst"; version="1.0.2"; sha256="1b7awn1hjckxisfdi4ck697hwd4a5sqklwi7xzh6kgqhk9pv7vjn"; depends=[]; broken = true; }; ciuupi = derive2 { name="ciuupi"; version="1.1.0"; sha256="0czfmmf62p1vml24s87pdwv52spqycchpkqzwk8vyd4n1z27r5s2"; depends=[functional nloptr pracma statmod]; broken = true; }; + clampSeg = derive2 { name="clampSeg"; version="1.1-1"; sha256="1zrndnd8n7ssn2fm0l7y31a2la0nsybqsl4j44r0mmc1m0m94vks"; depends=[lowpassFilter stepR]; broken = true; }; classyfireR = derive2 { name="classyfireR"; version="0.3.8"; sha256="1k1j4p5xmracrlaxfmvpp1r6krirvpfrv0f0jq8377kmhxmdwmm5"; depends=[cli clisymbols crayon dplyr httr jsonlite magrittr purrr rjson RSQLite stringr tibble tidyjson tidyr]; broken = true; }; cleanTS = derive2 { name="cleanTS"; version="0.1.1"; sha256="09lix3699rfjcazb0ikizpj97scspvpkgnm2bchaxh1asg61p5cq"; depends=[anomalize data_table gganimate ggplot2 ggtext glue imputeTestbench imputeTS lubridate shiny stringr tibble tibbletime transformr]; broken = true; }; cleanerR = derive2 { name="cleanerR"; version="0.1.1"; sha256="0rghn8rx7dj5clmc1dqvqwfm9kiva04k9gxsjjga3109l4jcpg63"; depends=[data_table plyr]; broken = true; }; cleanr = derive2 { name="cleanr"; version="1.3.5"; sha256="0hi1ykg7z0mai5hs4vqri45llwnjnc5gfxrzfcv6yv2s4c2hwq2w"; depends=[checkmate fritools pkgload rprojroot]; broken = true; }; clere = derive2 { name="clere"; version="1.2.0"; sha256="0qc26ycycxphrbksk7jb1m6vh66a2zsnw8k4jnazs23sqdg24im9"; depends=[Rcpp RcppEigen]; broken = true; }; climate = derive2 { name="climate"; version="1.0.5"; sha256="17hfxav8j0zyyl1839sj7nysv08j5z7xwz3p42di16cyx57czm4w"; depends=[curl data_table httr XML]; broken = true; }; + climdex_pcic = derive2 { name="climdex.pcic"; version="1.1-11"; sha256="01ax0kas43g3h21ixzc80f9gl4m9846gmk8v48rr0gkhcmbcc6jx"; depends=[PCICt Rcpp]; broken = true; }; clinUtiDNA = derive2 { name="clinUtiDNA"; version="1.0"; sha256="0x3hb09073gkh60fc8ia0sfk948sm6z6j8sqkz275k4m8ryrabas"; depends=[]; broken = true; }; clpAPI = derive2 { name="clpAPI"; version="1.3.1"; sha256="0hjpdbmwaww5fznqkkg9jli5y8f8zyd7crn0imdb0xxypmnp7zgf"; depends=[]; broken = true; }; clustcurv = derive2 { name="clustcurv"; version="2.0.1"; sha256="1xkl84pd1a3phl5yfm21yr5c0gbmmg1wk9b0lyl2x8466v5hl53q"; depends=[doParallel doRNG foreach ggfortify ggplot2 Gmedian npregfast RColorBrewer survival]; broken = true; }; clusterCrit = derive2 { name="clusterCrit"; version="1.2.8"; sha256="10pz1bikdbkm2ky3xnagp0qv60whalavp6j39b4p7d75jj5xcxgk"; depends=[]; broken = true; }; clusterGenomics = derive2 { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; broken = true; }; clustsig = derive2 { name="clustsig"; version="1.1"; sha256="0n5nf712vsa8zb0c2lv4gjqsgva62678vjngr9idgswb73shxm8v"; depends=[]; broken = true; }; + cns = derive2 { name="cns"; version="0.1.0"; sha256="1kn1cq32pp05ag22n7iwjxn6lxpqn443npzk6vdskjm5pbnsc33k"; depends=[]; broken = true; }; + cocktailApp = derive2 { name="cocktailApp"; version="0.2.2"; sha256="1dfalz1psmy1h8hb8hksgr7iq05ckf22yick7syhjapprb556mik"; depends=[dplyr DT forcats ggplot2 ggtern magrittr shiny shinythemes tibble tidyr]; broken = true; }; codadiags = derive2 { name="codadiags"; version="1.0"; sha256="1x243pn6qnkjyxs31h1hxy8x852r0fc952ww77g40qnrk8qw79xg"; depends=[coda]; broken = true; }; coexist = derive2 { name="coexist"; version="1.0"; sha256="15ydhrx996i6caa0360c2bgn2zvgwfg5wdhsqq1gvrggs15w7nml"; depends=[]; broken = true; }; collectArgs = derive2 { name="collectArgs"; version="0.4.0"; sha256="0fz5w1xsxiddzrwahrg50px4igyhd4plq655jaix6grancs7kvix"; depends=[magrittr]; broken = true; }; @@ -20360,6 +20626,7 @@ in with self; { compareODM = derive2 { name="compareODM"; version="1.2"; sha256="019hq8j56asjvh4x1p65785mf38xr05j3by0749gl9k9yl8645da"; depends=[XML]; broken = true; }; composits = derive2 { name="composits"; version="0.1.1"; sha256="0njz6yn3dxi5czzmp93lcz2xr5gphiii857s5jggygq0xdszlx86"; depends=[anomalize dobin dplyr fastICA forecast ggplot2 gridExtra ICS kableExtra otsad pracma rlang tibble tidyr tsoutliers]; broken = true; }; compstatr = derive2 { name="compstatr"; version="0.2.1"; sha256="0pg8yacfb7jvg9xr0gmis8a4g339isd77h6wr8dd6w900q47xac0"; depends=[dplyr fs httr janitor lubridate purrr readr rlang rvest sf stringr tibble tidyr xml2]; broken = true; }; + comtradr = derive2 { name="comtradr"; version="0.3.0"; sha256="17fdcgx27352jqdvz05q3crg29h78d0alp0abxmkzymwk3yq842j"; depends=[httr jsonlite magrittr purrr]; broken = true; }; concurve = derive2 { name="concurve"; version="2.7.7"; sha256="185jwz7a33sc9gbkfbcxwzgzd39xn5x72d0nk6p045mq3xssk3j9"; depends=[bcaboot boot colorspace dplyr flextable ggplot2 knitr metafor officer pbmcapply ProfileLikelihood scales survival survminer tibble tidyr]; broken = true; }; confoundr = derive2 { name="confoundr"; version="1.2"; sha256="000vf828qv04pplx8yc8q3mafxf4g0axip6z5zbsj2581yxv9jjh"; depends=[dplyr ggplot2 gridExtra magrittr purrr rlang Rmpfr scales stringr tidyr]; broken = true; }; conics = derive2 { name="conics"; version="0.3"; sha256="06p6dj5dkkcy7hg1aa7spi9py45296dk0m6n8s2n3bzh3aal5nzq"; depends=[]; broken = true; }; @@ -20372,11 +20639,11 @@ in with self; { corTools = derive2 { name="corTools"; version="1.0"; sha256="0arvqk2xp19ap73zmdk0kb1fycb3v2mf65b4bhanvcqwr4kg4vdk"; depends=[]; broken = true; }; coreTDT = derive2 { name="coreTDT"; version="1.0"; sha256="14rnh61gk3m6g8rq77hm9ybds0px15di2mxm3jiyfdfynx5ng58f"; depends=[]; broken = true; }; coreheat = derive2 { name="coreheat"; version="0.2.2"; sha256="1mahnd6k7whd7nj9ax1fhpm17j35i6prww06qx691l8dfn954ld9"; depends=[Biobase convertid heatmapFlex WGCNA]; broken = true; }; + corpus = derive2 { name="corpus"; version="0.10.2"; sha256="0fxa38xbd5fyhh0q1ycx8snj7ly8hv9jclbs77agkb6pb6p7yr64"; depends=[utf8]; broken = true; }; cort = derive2 { name="cort"; version="0.3.2"; sha256="1iayvgwjmpmb96w5841jxhwivca7s4v5bpsdy0lrbk121saqq5z1"; depends=[furrr nloptr osqp purrr Rcpp Rdpack]; broken = true; }; countyfloods = derive2 { name="countyfloods"; version="0.1.0"; sha256="0ld8p8dfk9khvwffbn8sad0j3an25s7cvbi6jxljgx4zc6ldh699"; depends=[dataRetrieval dplyr ggplot2 lubridate maps plyr R_utils tidyr]; broken = true; }; countytimezones = derive2 { name="countytimezones"; version="1.0.0"; sha256="0sk22fmz9d3wvlfvjl1xdavvl04q1ywy8ww2gi5am3yiizkf0v9w"; depends=[dplyr lubridate]; broken = true; }; covLCA = derive2 { name="covLCA"; version="1.0"; sha256="15jsjrlaws1cqyrwvh4lzbhxkb11jmgpmddg98nfrzmjpczn2iw3"; depends=[Matrix mlogit poLCA]; broken = true; }; - covid19br = derive2 { name="covid19br"; version="0.1.4"; sha256="01hyci2mr1716r9wddd7zjzlm2jb03w9qcisrzmpn4g4mglziy83"; depends=[curl data_table dplyr httr rlang sf tidyr]; broken = true; }; covidregionaldata = derive2 { name="covidregionaldata"; version="0.9.3"; sha256="1pq3il8wzygih419avf3nn5swd0z09mf2n0q361w3n7aa2m20yjf"; depends=[countrycode dplyr httr jsonlite lifecycle lubridate memoise purrr R6 readxl rlang stringr tidyr tidyselect vroom xml2]; broken = true; }; covreg = derive2 { name="covreg"; version="1.0"; sha256="0v19yhknklmgl58zhvg4szznb374cdh65i7s8pcj2nwrarycwzaq"; depends=[]; broken = true; }; coxinterval = derive2 { name="coxinterval"; version="1.2"; sha256="0vb7vmzbb2dsihx04jbp2yvzcr033g435mywmwimqhfqdrmjx3fi"; depends=[Matrix survival timereg]; broken = true; }; @@ -20385,13 +20652,13 @@ in with self; { crantastic = derive2 { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; broken = true; }; crestr = derive2 { name="crestr"; version="1.2.0"; sha256="1dr2xzr72cm0i7ldgx0kf96r0q1qa18fq6zivck1qd1gwy22iiq9"; depends=[clipr DBI openxlsx plot3D plyr raster rgdal rgeos RPostgres RSQLite scales sp stringr viridis]; broken = true; }; crimelinkage = derive2 { name="crimelinkage"; version="0.0.4"; sha256="1zzk50kyccvnp51vzp28c9yi23hsp25arrgdn88lwfwa0m43rlar"; depends=[geosphere igraph]; broken = true; }; - crispRdesignR = derive2 { name="crispRdesignR"; version="1.1.6"; sha256="1h9153iv55qkx9hyf3gs118m99mkzj5mbj6i3jg58chfp0m6jx78"; depends=[BiocGenerics Biostrings DT gbm GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors shiny stringr vtreat]; broken = true; }; crn = derive2 { name="crn"; version="1.1"; sha256="1fw0cwx478bs6hxidisykz444jj5g136zld1i8cv859lf44fvx2d"; depends=[chron RCurl]; broken = true; }; crossReg = derive2 { name="crossReg"; version="1.0"; sha256="1866jhfnksv9rk89vw7w4gaxi76bxfjvqxx7cfa8nlrcsmaqd7rf"; depends=[]; broken = true; }; crossmatch = derive2 { name="crossmatch"; version="1.3-1"; sha256="082lrv2129mfhwlh99z3g8id3a29s8854skl152bl3ig8pk2gbjz"; depends=[nbpMatching survival]; broken = true; }; crrp = derive2 { name="crrp"; version="1.0"; sha256="1fq54jr6avrli91a4z1hp5img4kghyw1yvjr5xyccsanf9i35x8r"; depends=[cmprsk Matrix survival]; broken = true; }; crrstep = derive2 { name="crrstep"; version="2015-2.1"; sha256="03vd97prws9gxc7iv3jfzffvlrzhjh0g6kyvclrf87gdnwifyn1z"; depends=[cmprsk]; broken = true; }; csSAM = derive2 { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; broken = true; }; + csa = derive2 { name="csa"; version="0.7.0"; sha256="0cmabcvfxfplnzx7mdsfas3jhgz44y86411amaphm75zmv8khcif"; depends=[data_table doParallel foreach ggplot2 ggpubr Lmoments moments raster reshape2 scales]; broken = true; }; csabounds = derive2 { name="csabounds"; version="1.0.0"; sha256="15l7i15w5jk4h3148dlk8v2i4awns5vxvv6m59qcv0hzns6jhx9j"; depends=[BMisc ggplot2 pbapply progress qte]; broken = true; }; csrplus = derive2 { name="csrplus"; version="1.03-0"; sha256="0kljndmiwblsvvdnxfywida9k0dmdwjq63d934l5yl6z7k4zd0xa"; depends=[sp]; broken = true; }; cstar = derive2 { name="cstar"; version="1.0"; sha256="1zws4cq5d37hqdxdk86g85p2wwihbqnkdsg48vx66sgffsf1fgxd"; depends=[]; broken = true; }; @@ -20400,6 +20667,7 @@ in with self; { customsteps = derive2 { name="customsteps"; version="0.7.1.0"; sha256="1v6ks8j1mj623yai515xnrpx60hvilbrsn59r3zw30n68555cvw8"; depends=[dplyr generics magrittr purrr recipes rlang tibble tidyselect]; broken = true; }; cutoffR = derive2 { name="cutoffR"; version="1.0"; sha256="1801jylmpp4msyf07rhg4153kky1zvi4v0kkjb9d51dc7zkhh531"; depends=[ggplot2 reshape2]; broken = true; }; cuttlefish_model = derive2 { name="cuttlefish.model"; version="1.0"; sha256="1rmkfyfd1323g2ymd5gi1aksp160cwy5ha5cjqh5r6fzd8hhqjxs"; depends=[]; broken = true; }; + cvam = derive2 { name="cvam"; version="0.9.3"; sha256="1fq1xwxhpny8fy2l1a45vj9gj3czkifb1bnbi33dlf99vv1pml7r"; depends=[coda Formula]; broken = true; }; cvcqv = derive2 { name="cvcqv"; version="1.0.0"; sha256="0327r4jw6m4avcz1zvdkxszqwaw2s9sh1i1jagl6aggd7aaiiyg0"; depends=[boot dplyr MBESS R6 SciViews]; broken = true; }; cvq2 = derive2 { name="cvq2"; version="1.2.0"; sha256="19k95xg2y3wd4mx3wvbrc1invybd446g13vsp3dv05nw2kx4f6w8"; depends=[]; broken = true; }; cwhmisc = derive2 { name="cwhmisc"; version="6.6"; sha256="1pf365g4f51cfrhlff9mqw2ddvkps0abax17zcn3vw1ba2djalnp"; depends=[lattice]; broken = true; }; @@ -20409,6 +20677,7 @@ in with self; { dTBM = derive2 { name="dTBM"; version="2.0"; sha256="14y0x97gb1345ybvpd4rk0bidlzl613lgrl9pa4y197nhdkqdrx0"; depends=[EnvStats tensorregress WeightedCluster]; broken = true; }; daff = derive2 { name="daff"; version="0.3.5"; sha256="00zcdf215m7p3xm9yv571v09znhdqacxg69hb5b5j749mp4wdsyj"; depends=[jsonlite V8]; broken = true; }; daiR = derive2 { name="daiR"; version="0.9.0"; sha256="0kq633jpiagbpsj0190pzpxmz8df6niqc6lwqgrahxfpda798srk"; depends=[base64enc curl fs gargle glue googleCloudStorageR httr jsonlite magick pdftools purrr stringr]; broken = true; }; + dalmatian = derive2 { name="dalmatian"; version="1.0.0"; sha256="0hpyg8sl5v87l1hxax9sj863hy9njdyp7hnsaw3cida365p0dswa"; depends=[coda dglm dplyr ggmcmc rlang tidyr]; broken = true; }; darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; broken = true; }; dash = derive2 { name="dash"; version="0.9.4"; sha256="1ggdfzlf7ayv2nc6qpmyrg3cx31cikhnv7smwpx6xlmj2sc75war"; depends=[assertthat base64enc brotli crayon digest fiery glue htmltools jsonlite magrittr mime plotly R6 reqres rlang routr]; broken = true; }; dashboard = derive2 { name="dashboard"; version="0.1.0"; sha256="1znqwvz49r47lp6q48qaas0s63wclgybav82a247qvcavzns3kip"; depends=[Rook]; broken = true; }; @@ -20417,7 +20686,8 @@ in with self; { datamap = derive2 { name="datamap"; version="0.1-1"; sha256="0qm4zb9ldg4wz1a7paj5ilr1dhyagq81rk9l2v43hmkv52sssgkv"; depends=[DBI]; broken = true; }; datamart = derive2 { name="datamart"; version="0.5.2"; sha256="0c0l157fzkcp30ch4ymaalcx18zhz6sa5srr50w9izhbx3pmldxp"; depends=[base64 gsubfn markdown RCurl RJSONIO XML]; broken = true; }; datapackage_r = derive2 { name="datapackage.r"; version="1.3.5"; sha256="01xx8alj3niznkrn3y2w9j1g60zn1fq0a2clf4r5p2pjyr2rqgy3"; depends=[config future httr iterators jsonlite jsonvalidate purrr R_utils R6 readr rlist stringr tableschema_r urltools V8]; broken = true; }; - datelife = derive2 { name="datelife"; version="0.6.5"; sha256="1ss0387y360rqaahipxadmhcqh4gww4dk1lvzip0glcx65mk7lj7"; depends=[abind ape BiocManager bold cluster compare data_table geiger httr ips knitcitations paleotree phangorn phylobase phylocomr phytools plyr rotl stringr taxize treebase]; broken = true; }; + datastructures = derive2 { name="datastructures"; version="0.2.9"; sha256="0prw24iy1af02g1nzw588dv085bdnl6pzvizpxspmwzj6vrfbaav"; depends=[BH purrr Rcpp]; broken = true; }; + dave = derive2 { name="dave"; version="2.0"; sha256="1rraphpp34czyjj15xzvj1ihlnqzcppqls9n2g85n49zv0n1ngn8"; depends=[cluster labdsv nnet tree vegan]; broken = true; }; dbEmpLikeGOF = derive2 { name="dbEmpLikeGOF"; version="1.2.4"; sha256="0vhpcxy702cp3lvlif2fzmvccys8iy7bv1fbg6ki2l8bvn2f7c5p"; depends=[]; broken = true; }; dbEmpLikeNorm = derive2 { name="dbEmpLikeNorm"; version="1.0.0"; sha256="0h5r2mqgallxf9hin64771qqn9ilgk1kpsjsdj2dqfl3m8zg967l"; depends=[dbEmpLikeGOF]; broken = true; }; dccvalidator = derive2 { name="dccvalidator"; version="0.3.0"; sha256="1l74pqvac0n7dyfzkz2m0m6j19c8icymbwcifp2g5qvrpznfhxjb"; depends=[config ggplot2 glue golem htmltools knitr markdown purrr reactable readr readxl reticulate rlang shiny shinyBS shinydashboard shinyjs skimr tibble visdat]; broken = true; }; @@ -20433,6 +20703,7 @@ in with self; { dendrometeR = derive2 { name="dendrometeR"; version="1.0.0"; sha256="1par27ipgbfbrmdlwvkf82i5dgnfrcawmavakrf8lplin2hhb7gs"; depends=[forecast pspline zoo]; broken = true; }; denpro = derive2 { name="denpro"; version="0.9.2"; sha256="19hrpfd44jaavq81dbyj3frris4aflfc8lig0471whv0pc6jci2k"; depends=[]; broken = true; }; depth = derive2 { name="depth"; version="2.1-1.1"; sha256="0szy0027nh4ps1z919i740i50app5q7cfyg1fj7pdyl45nbl8k6m"; depends=[abind circular rgl]; broken = true; }; + dequer = derive2 { name="dequer"; version="2.0-2"; sha256="0bc1gf5kbp36zxds70l40r4bsa4f1ih11cy7dkxc6yym6hp79789"; depends=[]; broken = true; }; deseasonalize = derive2 { name="deseasonalize"; version="1.35"; sha256="1fjsa7g34dckjs6mx9b10m99byxagggm0p9pw2f1vmpjqlasin0l"; depends=[FitAR lattice]; broken = true; }; designGG = derive2 { name="designGG"; version="1.1"; sha256="1x043j36llwd7kd4skbpl2smz2ybsxjqf5yd1xwqmardq60gdv2w"; depends=[]; broken = true; }; desire = derive2 { name="desire"; version="1.0.7"; sha256="0jmj644nj6ck0gsk7c30af9wbg3asf0pqv1fny98irndqv508kf6"; depends=[loglognorm]; broken = true; }; @@ -20476,19 +20747,21 @@ in with self; { dsims = derive2 { name="dsims"; version="1.0.1"; sha256="15yy3kivg26pmzaby0kaj4vq4526jrnvpiqj24bcvh7sskv8myif"; depends=[Distance dssd ggplot2 gridExtra mgcv mrds rgeos rlang rstudioapi sf sp]; broken = true; }; dssd = derive2 { name="dssd"; version="1.0.0"; sha256="1svzd3d32lw6qvrpkgnidyrpq1903y2a1xplyq51gf2niwjyaxa0"; depends=[ggplot2 rgdal sf]; broken = true; }; dtree = derive2 { name="dtree"; version="0.4.2"; sha256="1cpv0pyf515610djxzfw1c83p3alk5a93clg4x9gk7a7qy4cyhr1"; depends=[caret evtree party partykit rpart]; broken = true; }; - dual_spls = derive2 { name="dual.spls"; version="0.1.2"; sha256="0cy3l715bf8l6yx5sdqmz9v5an3jr0zqhc99hzqv8iyzrdrd8hwd"; depends=[pdist]; broken = true; }; dummies = derive2 { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; broken = true; }; dupiR = derive2 { name="dupiR"; version="1.2"; sha256="0p649yw7iz6hnp7rqa2gk3dqkjbqx1f6fzpf1xh9088nbf3bhhz3"; depends=[plotrix]; broken = true; }; durmod = derive2 { name="durmod"; version="1.1-4"; sha256="0d721sbxjfh00gpxd4hj8iq04awfd0pcd6bw8cv7kny21l2f3w44"; depends=[data_table mvtnorm nloptr numDeriv Rcpp]; broken = true; }; + dwp = derive2 { name="dwp"; version="1.0"; sha256="1q8gbn18gsgknazzvdg5qg2lzqdaz3x14w210hw06q98dfpkvfih"; depends=[boot expint GenEst gtools invgamma magrittr MASS matrixStats mvtnorm numDeriv plotrix pracma sf statmod VGAM]; broken = true; }; dynConfiR = derive2 { name="dynConfiR"; version="0.0.2"; sha256="11grish5x9xiw6gkr2bmg1vpi2hdqw7j52czhgc9d9gxvxlyjxp8"; depends=[dplyr magrittr minqa progress Rcpp rlang]; broken = true; }; dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; broken = true; }; + dynamite = derive2 { name="dynamite"; version="1.3.1"; sha256="0xidyjfi1mqvazwncxjzgxbkb4dcanq1i18h93wdyr4qsxs860dg"; depends=[checkmate cli data_table ggplot2 glue loo patchwork posterior rlang rstan tibble]; broken = true; }; dynatopmodel = derive2 { name="dynatopmodel"; version="1.2.1"; sha256="0lpfhj69bvagqzzg2kjqvn9xx8f93ii34flrrns20z3bxla6gds9"; depends=[deSolve lubridate maptools raster rgdal rgeos sp topmodel xts zoo]; broken = true; }; dynia = derive2 { name="dynia"; version="0.2"; sha256="1swip4kqjln3wsa9xl0g92zklqafarva923nw7s44g4pjdy73d5l"; depends=[]; broken = true; }; + easyNCDF = derive2 { name="easyNCDF"; version="0.1.1"; sha256="1ffpl5zf9i62ifiasimv32j9s9bpmbqi9wrv520124arv4lwcyix"; depends=[abind ClimProjDiags ncdf4]; broken = true; }; ebSNP = derive2 { name="ebSNP"; version="1.0"; sha256="0x3ijwg4yycsfy6jch1zvakzfvdgpiq8i7sqdp5assb8z1823w0b"; depends=[]; broken = true; }; ebmstate = derive2 { name="ebmstate"; version="0.1.3"; sha256="04pg9yqbjrq10ai13c8zm8sy7spnf96ldbbql7qysjl91ljgrqz6"; depends=[HDInterval mstate Rcpp survival]; broken = true; }; + ecan = derive2 { name="ecan"; version="0.2.0"; sha256="0b0p8g20zh775539654agdpak6adgk9fzik6nazyv18irgnakbi8"; depends=[cluster dave dendextend dplyr ggplot2 jsonlite labdsv magrittr MASS purrr rlang stringr tibble tidyr vegan]; broken = true; }; ecap = derive2 { name="ecap"; version="0.1.2"; sha256="0d260y4phh1a7zlj2lgvdf7xd2z14l9djv7nrwa84pwqqyijc7rl"; depends=[ggplot2 quadprog]; broken = true; }; ecce = derive2 { name="ecce"; version="1.0.9"; sha256="071ahimmwc1bgcwli4c40h7drdg5ldhh0w1ldzxkjc78qyw8s23d"; depends=[purrr RCurl rjson stringr]; broken = true; }; - ech = derive2 { name="ech"; version="0.1.2.0"; sha256="0xkgbqs6wmfp6a7dih4n850dw6ky596hlpmfrv72lnp77w03pll9"; depends=[assertthat curl dplyr fs geouy glue haven janitor labelled laeken purrr readxl rlang srvyr statar stringr survey tidyr]; broken = true; }; edbuildr = derive2 { name="edbuildr"; version="0.3.0"; sha256="19fsk8qkxyzncn614fy6hmmxpv1dikqghs101hbzd0g0a511xk8f"; depends=[dplyr magrittr openxlsx scales stringr tidyselect]; broken = true; }; edcc = derive2 { name="edcc"; version="1.0-0"; sha256="036fi6mnn9480hkb378xb5jilkfvdydjmkyw4mcc9s1lz195f62w"; depends=[spc]; broken = true; }; edci = derive2 { name="edci"; version="1.1-3"; sha256="1f1ry2adfranfrrvf1gkiy58pra3z6bray4v5fgr0z9n1ybcaff0"; depends=[]; broken = true; }; @@ -20499,28 +20772,33 @@ in with self; { effectFusion = derive2 { name="effectFusion"; version="1.1.3"; sha256="0653857zgfv2lrksja6k9i7m2jn3ha4lri6mlmcn6fgxkmr54bgw"; depends=[bayesm cluster ggplot2 GreedyEPL gridExtra MASS Matrix mcclust]; broken = true; }; eflm = derive2 { name="eflm"; version="0.3.0"; sha256="0pl1z0yy257x4yhy2m7w6xkicr2a5b37rdsrf7a5ramk7z2nvs4m"; depends=[tibble]; broken = true; }; efts = derive2 { name="efts"; version="0.9-0"; sha256="1cdn37sij3q73z9gal6x3nnnds55whfj5ywyww119hx092xcb2h4"; depends=[lubridate magrittr ncdf4 plyr stringr udunits2 xts]; broken = true; }; + eiCompare = derive2 { name="eiCompare"; version="3.0.1"; sha256="0302czk1g1cdnp8jwwrim1y2iw0c0vv3cg7qg5n8dyrqzh4jqvyl"; depends=[bayestestR censusxy coda data_table doParallel doSNOW dplyr ei eiPack foreach ggplot2 leaflet magrittr mcmcse overlapping purrr rlang sf stringr tidyr tidyselect wru]; broken = true; }; eigeninv = derive2 { name="eigeninv"; version="2011.8-1"; sha256="18dh29js824d7mrvmq3a33gl05fyldzvgi8mmmr477573iy9r30g"; depends=[]; broken = true; }; eigenprcomp = derive2 { name="eigenprcomp"; version="1.0"; sha256="156qyv7sl8nng55n3ay6dnpayyfrqv27ndz40xf4w92is9zmymy0"; depends=[]; broken = true; }; elasticIsing = derive2 { name="elasticIsing"; version="0.2"; sha256="1zjgvz7w5j06x2cd1fzjl85di95ah67m1lanw01kic2bvhfwfbn6"; depends=[cvTools glmnet magrittr qgraph reshape2]; broken = true; }; elbird = derive2 { name="elbird"; version="0.2.5"; sha256="1n9z71xii5kymrm5ar4gldz2czk8z94qzd2ms7fwk0cwynbdcc5k"; depends=[cpp11 dplyr matchr purrr R6 tibble vroom]; broken = true; }; elec_strat = derive2 { name="elec.strat"; version="0.1.1"; sha256="09196k5c3jsikh98d33bn70izwcbx0wb5ki9fv1ij0dw9mnv4c3p"; depends=[elec]; broken = true; }; + emba = derive2 { name="emba"; version="0.1.8"; sha256="1bzp1cplr977w87bm0pvabvgai91a3j51pfjn4lc1ncjbr2v6wl0"; depends=[Ckmeans_1d_dp dplyr igraph purrr readr rje stringr tibble tidyr tidyselect usefun visNetwork]; broken = true; }; emma = derive2 { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[clusterSim earth]; broken = true; }; emme2 = derive2 { name="emme2"; version="0.9"; sha256="035s4h95ychqb14wib0dqbg4sjy9q01fsryr0ri25g1hsi5f8lpm"; depends=[reshape]; broken = true; }; empiricalFDR_DESeq2 = derive2 { name="empiricalFDR.DESeq2"; version="1.0.3"; sha256="0h2mcdw4v3ac6dn0s4z37l4sdzbi12sxrnn0f0gc9z207dyyf6w3"; depends=[DESeq2 GenomicRanges]; broken = true; }; enRich = derive2 { name="enRich"; version="3.1"; sha256="0xl9rhz6mflzp1g5d51xz74dsm8qp16jbkflhzrha3vfirn2jh8q"; depends=[]; broken = true; }; endogMNP = derive2 { name="endogMNP"; version="0.2-1"; sha256="0maxcp321ngbxrg0i23nlwhj849v771xahh53367x928ss4f8v7i"; depends=[]; broken = true; }; + ensModelVis = derive2 { name="ensModelVis"; version="0.1.0"; sha256="06nhk616h32225p65ms4k9ia5qwd7kngpa4z6hxzn9nzmiirma60"; depends=[dplyr forcats ggplot2 magrittr rlang tidyr]; broken = true; }; entcn = derive2 { name="entcn"; version="1.0.0"; sha256="0zwhhjrc24d3hr9494p9ayxlkd0g6jml9raxwv59mpvpprrasdws"; depends=[RYoudaoTranslate stringr]; broken = true; }; enviPick = derive2 { name="enviPick"; version="1.5"; sha256="04q6zwqq2ip8b8h2n1jpgx1bzcvi7lazljs0806wiakbc79x232p"; depends=[readMzXmlData shiny]; broken = true; }; envlpaster = derive2 { name="envlpaster"; version="0.1-2"; sha256="11a5n40k1ln5gxxvwq1vh4dhmhifhlm89hkhf36qnhj4bjh3v3y0"; depends=[aster aster2 caTools MASS]; broken = true; }; + eoa3 = derive2 { name="eoa3"; version="1.0"; sha256="099irdxripakk6sjy5gdwvd1nv70yad0q4cdm9w3q4q0ks5gss5w"; depends=[actuar GenEst MASS rjags survival VGAM]; broken = true; }; epi2me2r = derive2 { name="epi2me2r"; version="0.1.0"; sha256="1zsh9fhwjjh9y98s7hdhchbfdjm5xxqqz1qinq55x9yv11b1xfwy"; depends=[Biobase data_table metagenomeSeq phyloseq taxonomizr]; broken = true; }; epiGWAS = derive2 { name="epiGWAS"; version="1.0.2"; sha256="0jqblfmz02za3b2pgi15379bzgh98yv5kyv8kh0lkzhrmpgph2zj"; depends=[DescTools glmnet matrixStats SNPknock]; broken = true; }; epidemia = derive2 { name="epidemia"; version="1.0.0"; sha256="1lfbibcpm58a05wrikwfzxkfqxw6yk41b1q07wpchxpz1lfv2v5y"; depends=[bayesplot BH dplyr ggplot2 hrbrthemes lme4 magrittr Matrix Rcpp RcppEigen Rdpack rlang rstan rstanarm rstantools scales StanHeaders tidyr zoo]; broken = true; }; epiphy = derive2 { name="epiphy"; version="0.3.4"; sha256="04wsppjycnrzrml3zxrpr0xdxxas3hj8rskiivx5vfmfjpwipq4r"; depends=[ggplot2 msm pbapply Rcpp transport]; broken = true; }; episplineDensity = derive2 { name="episplineDensity"; version="0.0-1"; sha256="0nmh97xajnnh54i04yq8fdici4n5xvcbpdbjdbz79483gnils4vn"; depends=[nloptr pracma]; broken = true; }; + epitopR = derive2 { name="epitopR"; version="0.1.2"; sha256="0bqj62jl48pql7dbmq96fgs0pza3krycd9i6fj0sjz7yxg4i46q6"; depends=[Biostrings dplyr fs here httr janitor purrr readr seqinr stringr tibble tidyverse]; broken = true; }; eqs2lavaan = derive2 { name="eqs2lavaan"; version="3.0"; sha256="1lj6jwkfd84h9ldb6l74lrx2pnsl1c0d7mnrcrjkska87djb2nzd"; depends=[lavaan stringr]; broken = true; }; eqtl = derive2 { name="eqtl"; version="1.1-7"; sha256="0xfr8344irhzyxs9flnqn4avk3iv1scqhzac5c2ppmzqhb398azr"; depends=[qtl]; broken = true; }; + equatiomatic = derive2 { name="equatiomatic"; version="0.3.1"; sha256="0gy1wy10zc7h7h1s0hwd545iv4af5x2g8pqsgzyryydd6426g2gj"; depends=[broom broom_mixed knitr shiny]; broken = true; }; erboost = derive2 { name="erboost"; version="1.3"; sha256="09hlpn6mqsmxfrrf7j3iy8ibb2lc4aw7rxy21g3pgqdmd9sbprim"; depends=[lattice]; broken = true; }; - ergMargins = derive2 { name="ergMargins"; version="0.1.3"; sha256="0liq64qjd3b0v5pcsvfmvmv7dr0ak4ld2mbin8w2wcdnvpfajjy5"; depends=[btergm ergm Matrix network numDeriv sna statnet_common]; broken = true; }; ergm_userterms = derive2 { name="ergm.userterms"; version="3.10.0"; sha256="1aqrgdayh73dkr71gf8vawlj6qgv66pxr4klxgqb6ffan66b5p8g"; depends=[ergm network statnet_common]; broken = true; }; ergmclust = derive2 { name="ergmclust"; version="1.0.0"; sha256="18vx02vr2wi0gw09g4hxb8glf38y06v4a0c6q666qv8bgcb0pgkw"; depends=[igraph lda MASS quadprog Rcpp RcppArmadillo viridis]; broken = true; }; ergmito = derive2 { name="ergmito"; version="0.3-0"; sha256="0ajfx8g31p0lf0ajrgssb9lkhs1bxkz19z3q99l500znlivc2fy2"; depends=[ergm MASS network Rcpp RcppArmadillo texreg]; broken = true; }; @@ -20532,7 +20810,6 @@ in with self; { evaluator = derive2 { name="evaluator"; version="0.4.3"; sha256="1gccymjb1ad3xw3kmqafchazv9rid6v6c3h8w96ai5b2jh8zlgwk"; depends=[cli crayon dplyr extrafont ggplot2 magrittr mc2d purrr readr readxl rlang rstudioapi scales stringi tibble tidyr vctrs viridis]; broken = true; }; eventr = derive2 { name="eventr"; version="1.0.0"; sha256="08ljjvfrnfmi49b9bgizvvswxydln8ny901grn5j288pq0djjqyk"; depends=[dplyr magrittr purrr]; broken = true; }; eventstudies = derive2 { name="eventstudies"; version="1.2.2"; sha256="01vpd0gnxaibxn3nq6618rxlwapm86idz86n0wj5kfz4a9kj7lsx"; depends=[boot sandwich testthat xts zoo]; broken = true; }; - evt0 = derive2 { name="evt0"; version="1.1-3"; sha256="08sbyvx49kp3jsyki60gbbnci26d6yk0yj2zcl4bhfac8c3mm6ya"; depends=[evd]; broken = true; }; exactLoglinTest = derive2 { name="exactLoglinTest"; version="1.4.2"; sha256="0j146ih9szzks9r45vq1jf47hrwjq081q1nsja5h1gpllks8217h"; depends=[]; broken = true; }; exactmeta = derive2 { name="exactmeta"; version="1.0-2"; sha256="1v807ns799qajffky4k18iah0s3qh2ava6sz5i85hwx9dhkz19h4"; depends=[]; broken = true; }; excerptr = derive2 { name="excerptr"; version="2.0.1"; sha256="0lmcxlpxvldxwqxrprqq39hk5f770ii1x38jm2jbs4n75smp4m21"; depends=[checkmate reticulate]; broken = true; }; @@ -20568,14 +20845,15 @@ in with self; { fakeR = derive2 { name="fakeR"; version="1.0"; sha256="0f4ngnd8s34j1327zp3aqnsiw0gfxkp1i24ng20hrmfl13s1qmxp"; depends=[mvtnorm polycor pscl VGAM]; broken = true; }; fakemake = derive2 { name="fakemake"; version="1.10.4"; sha256="04k5dkfw07np0fgpp0n9zzswfnk2qrvv2dzghqb4mwasnlffqz57"; depends=[fritools igraph MakefileR]; broken = true; }; fam2r = derive2 { name="fam2r"; version="1.2"; sha256="0pq5cmzwk3s8cz5x8dsfb2d6qfpapkrwbzvkqmqkhcwhwryy40mm"; depends=[Familias paramlink]; broken = true; }; + fame = derive2 { name="fame"; version="2.21.1"; sha256="18lzf2vxyzlmd73m9q0si663mjjm66nrf7q1iy0fw73gpvxqr9bf"; depends=[tis]; broken = true; }; fasi = derive2 { name="fasi"; version="1.0.0"; sha256="1hfd6nl8zvn7sybji8s1pa2wl95l2vqa07rv96yn9rk07qvdc6dy"; depends=[fastAdaboost gam naivebayes]; broken = true; }; fastAdaboost = derive2 { name="fastAdaboost"; version="1.0.0"; sha256="1pv1y6znvc37pgwk99v4r0hljhipq8v6r3r5cb5vhgyl0bfi8g38"; depends=[Rcpp rpart]; broken = true; }; fastCorrDiff = derive2 { name="fastCorrDiff"; version="0.5"; sha256="0fis04xfarvmhpdkh7524ffga8f8svpcn3837rqwy0g039dcfa64"; depends=[irlba Matrix plyr RSpectra]; broken = true; }; fastHICA = derive2 { name="fastHICA"; version="1.0.2"; sha256="1h794ybbii0k7v3x0r1499zxdqa1i1dpi3i7idzqdrffnb5kmwlv"; depends=[energy fastICA]; broken = true; }; + fastclime = derive2 { name="fastclime"; version="1.4.1"; sha256="0zcir8r11b2hxr9vvkmvxlzmhfcaxbr0wbjy86ysr912mp8fs9i3"; depends=[igraph lattice MASS Matrix]; broken = true; }; fastcmprsk = derive2 { name="fastcmprsk"; version="1.1.1"; sha256="00jpmmlpldrqamgw7q7gx6s4rl1bxqlzw2jglw36k5zawcdb69y6"; depends=[dynpred foreach survival]; broken = true; }; fasteraster = derive2 { name="fasteraster"; version="1.1.1"; sha256="1ycr2h046jds2758xvxn00rhglx3zarbzn3r38j66j5pnz2iiq4f"; depends=[Rcpp]; broken = true; }; fasthplus = derive2 { name="fasthplus"; version="1.0"; sha256="05j4lg1gkkz1vi99dx73igvk9xyrli8j6m4hzhpcnyhy0h9bxiqj"; depends=[]; broken = true; }; - faux = derive2 { name="faux"; version="1.1.0"; sha256="0cmgsm8c8w5d5zk00j4872x7fby0rdi7lmw0w0ncahlnh72grpjm"; depends=[dplyr ggplot2 jsonlite lme4 rlang truncnorm]; broken = true; }; fbRanks = derive2 { name="fbRanks"; version="2.0"; sha256="17kbmdpgqkj2n951c6mdsrgfga6kiij1gqiw1wpi0q3fq4dlfrzx"; depends=[igraph stringr]; broken = true; }; fcd = derive2 { name="fcd"; version="0.1"; sha256="091wbf5iskcgyr7jv58wrf590qijb0qcpninmvm3xrwxi34r37xr"; depends=[combinat glmnet MASS]; broken = true; }; fdakma = derive2 { name="fdakma"; version="1.3.0"; sha256="1l4knr72kg7vqqnh0n5a7abqhsxz35g3byh00b5pwvndzf42xjj9"; depends=[cli fdacluster]; broken = true; }; @@ -20594,7 +20872,6 @@ in with self; { fgpt = derive2 { name="fgpt"; version="2.3"; sha256="1d0qzsn4b68jhk07k97iv765jpmzzh1gwqpid0r76vg4cwqfs3n7"; depends=[]; broken = true; }; fidap = derive2 { name="fidap"; version="0.0.3"; sha256="0zq07395qx59xxb3cj5axhpkwnad2h88qbm3aan43q5cip9wi2bx"; depends=[httr jsonlite]; broken = true; }; fieldRS = derive2 { name="fieldRS"; version="0.2.3"; sha256="0jr2l5cnrawd6wibmb6r0sngd851z9mbz4mwprnbbqbv3hzzrpm9"; depends=[caret concaveman geosphere ggplot2 raster rgeos sp stringdist vegan]; broken = true; }; - finnts = derive2 { name="finnts"; version="0.2.2"; sha256="17gb479svks3xhfqvm0q8l0nv5iz77ngdl3f7xrrbwi695wrrpc1"; depends=[cli Cubist dials doParallel dplyr earth foreach generics glmnet gtools hts kernlab lubridate magrittr modeltime modeltime_gluonts modeltime_resample parsnip plyr purrr recipes rsample rules stringr tibble tidyr tidyselect timetk tune workflows]; broken = true; }; fipe = derive2 { name="fipe"; version="0.0.1"; sha256="055jav8h4wws76jahm2d5dj49wkvzchh3f2vk5d50pny4dc7smar"; depends=[dplyr forcats furrr future httr jsonlite lubridate magrittr purrr readr stringr tibble tidyr]; broken = true; }; firebase = derive2 { name="firebase"; version="1.0.1"; sha256="0sdv3l13byqn4sfp360scj4260adyvnbvzxkc88zvg3k33fx5hmn"; depends=[base64enc cli htmltools jose jsonlite openssl R6 shiny]; broken = true; }; fisheyeR = derive2 { name="fisheyeR"; version="0.9"; sha256="1w6va7gakqq2q8hsvdszpn8s2ysdfc648bk5p5v3wbl5s403bci8"; depends=[tkrplot]; broken = true; }; @@ -20603,8 +20880,10 @@ in with self; { fitDRC = derive2 { name="fitDRC"; version="1.1.1"; sha256="09z9l27iwl0fd3zy6rsdhmy8qbm5d9a4wcaj5rxp7ynlnpi102aa"; depends=[]; broken = true; }; fitTetra = derive2 { name="fitTetra"; version="1.0"; sha256="0ia6wk4gicpmn6kclsd28p7v1npwfv2blagiz0cxzwfw3njv103g"; depends=[]; broken = true; }; fitdc = derive2 { name="fitdc"; version="0.0.1"; sha256="1b1abib7jkl7a6r686r53qjw2ywb9q2h67is8691kkaqxpawg30p"; depends=[]; broken = true; }; + fixedincome = derive2 { name="fixedincome"; version="0.0.4"; sha256="1h3gh6bbb2sdbqwx5p53j3c6k28az1a7mvxfh8754lx24h2igfgk"; depends=[bizdays ggplot2 scales]; broken = true; }; flair = derive2 { name="flair"; version="0.0.2"; sha256="0hvg9k7l6vdhmbmql1viyn54f07r31ssyyhdv2v242i0npa2l25r"; depends=[dplyr evaluate ggplot2 glue knitr magrittr purrr rmarkdown stringr]; broken = true; }; flars = derive2 { name="flars"; version="1.0"; sha256="06qma1ar1nj7n6g9alk1qydm5bkj6lsjx0pqkikxpb41d91civqk"; depends=[fda MASS Matrix Rcpp RcppEigen]; broken = true; }; + flatness = derive2 { name="flatness"; version="0.1.4"; sha256="0zl1x4wn5wgm9aksb96ghh395z7fz1awglfjdiid4ak5ssbqgsbq"; depends=[data_table lattice xtable]; broken = true; }; flightplanning = derive2 { name="flightplanning"; version="0.8.4"; sha256="1n0mjrqlnfv4fvl512slw3d3vmlcn2lhf89jlfg2s0xfrd9k4pq8"; depends=[rgdal rgeos sp]; broken = true; }; flow = derive2 { name="flow"; version="0.1.0"; sha256="1d5cj0qbmx6cwzik83vb0vijryq4b93y5wwgm8k92wg3lgknzdj6"; depends=[here htmlwidgets lifecycle nomnoml rstudioapi styler webshot]; broken = true; }; flower = derive2 { name="flower"; version="1.0"; sha256="1h2fvpjrvpbyrqb8hd51sslr1ibpwa7h9fiqy9anvf2yim5j11yq"; depends=[]; broken = true; }; @@ -20619,7 +20898,6 @@ in with self; { foster = derive2 { name="foster"; version="0.1.1"; sha256="1gkn3mgxsq3p7nazw80z61yhc1dqxhjvd667xklpjka4rrk2am8p"; depends=[caret data_table dplyr randomForest raster reshape2 rgdal RStoolbox sp spatstat spatstat_geom trend yaImpute]; broken = true; }; fpca = derive2 { name="fpca"; version="0.2-1"; sha256="13b102026xlfb7c2rb3xsqsymm7xpmaxppaafjkb5dx0b1lz0jrc"; depends=[sm]; broken = true; }; fpmoutliers = derive2 { name="fpmoutliers"; version="0.1.0"; sha256="108bp3smk9jnckd5237xly4ywmal03rq1kidq5z61l6zrhc3yfh9"; depends=[arules doParallel foreach Matrix pmml pryr R_utils XML]; broken = true; }; - fractalRegression = derive2 { name="fractalRegression"; version="1.0"; sha256="0lkxm3f9xz1c4kc81rfhd521q9jzsdb3ngrgn7nsawllpi2zrgwb"; depends=[Rcpp RcppArmadillo]; broken = true; }; frailtySurv = derive2 { name="frailtySurv"; version="1.3.7"; sha256="0jyqnj4mscfcjg38a04246xfggnjgwdgwd7w4krz6wa1c3igzx0f"; depends=[ggplot2 nleqslv numDeriv Rcpp reshape2 survival]; broken = true; }; frambgrowth = derive2 { name="frambgrowth"; version="0.1.0"; sha256="1xmy1zxp7aa2n8frlxhn1bl41zda1jldvvxb3q41yam3pslc8m1q"; depends=[]; broken = true; }; freesurfer = derive2 { name="freesurfer"; version="1.6.8"; sha256="0ks6ms5vp38pykcg66w960nmfgq383iprrbbzw5dlx9xnrx4yhbh"; depends=[neurobase R_utils reshape2]; broken = true; }; @@ -20631,14 +20909,15 @@ in with self; { fts = derive2 { name="fts"; version="0.9.9.2"; sha256="08pwhi19db173d4nsk5rl8xa8qmaddj4bn3cjxb8ql4kny59i57q"; depends=[BH zoo]; broken = true; }; fugeR = derive2 { name="fugeR"; version="0.1.2"; sha256="0kd90s91vzv0g3v9ii733h10d8y6i05lk21p5npb3csizqbdx94l"; depends=[Rcpp snowfall]; broken = true; }; fulltext = derive2 { name="fulltext"; version="2.0"; sha256="104wkas9azyb2drfaz1hrgbx2ilbb0k2mb8411l10rsbkqva099f"; depends=[aRxiv crul data_table digest fauxpas hoardr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble xml2]; broken = true; }; + funHDDC = derive2 { name="funHDDC"; version="2.3.1"; sha256="1fd3n3y5icm2lcdz5jzfybbbmmzbbgq949x1g4bx4s0h0dnc0rkk"; depends=[fda MASS]; broken = true; }; functClust = derive2 { name="functClust"; version="0.1.6"; sha256="0mdfxvrx3wk497a9bbkwnzbm6hm2s4wqs3h09m3hj48ybpqmhz9i"; depends=[clusterCrit multcompView]; broken = true; }; futile_paradigm = derive2 { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; broken = true; }; fuzzyFDR = derive2 { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; broken = true; }; g2f = derive2 { name="g2f"; version="0.2"; sha256="1jsmiv6v8ilpxg1k1npcgqa467hpyw7mzh5m8dp7bxar4j5npsp4"; depends=[KEGGREST minval sybil]; broken = true; }; - gMWT = derive2 { name="gMWT"; version="1.2"; sha256="0gy8mm6ajbd2nl059nrb24wkh06qbbbg2h8m6fl58n5wgsjns1va"; depends=[clinfun Rcpp RcppArmadillo]; broken = true; }; gPdtest = derive2 { name="gPdtest"; version="0.4"; sha256="00dlhnklfg2yp4hp7yjgr2nfswv22c007xq1mxdbkll62zgd94mq"; depends=[]; broken = true; }; gRapfa = derive2 { name="gRapfa"; version="1.0"; sha256="07yzwzna9pdyzndxk6wwyl6v3gkfc7dvy1ixmdl3d38mcl1ahwyq"; depends=[igraph]; broken = true; }; gWidgets2RGtk2 = derive2 { name="gWidgets2RGtk2"; version="1.0-7"; sha256="14c933j0wj3lb5da75zxg3w3mfqh0nqk8rczbi4dnqd8sna6jks9"; depends=[gWidgets2 memoise RGtk2]; broken = true; }; + gadget2 = derive2 { name="gadget2"; version="2.3.9"; sha256="1cha4n0bd1imlvpzsgd337p0my75kakjsxdmmgx8p519r2dl07vz"; depends=[]; broken = true; }; galah = derive2 { name="galah"; version="1.5.0"; sha256="1rpjavkhamqn1ap4zg4m0ch1ykwijrls9v4gz35fwys6a42x6ihq"; depends=[assertthat crul data_table data_tree digest glue httr jsonlite lifecycle rlang sf stringr tibble tidyselect]; broken = true; }; gameofthrones = derive2 { name="gameofthrones"; version="1.0.2"; sha256="10ns4yl1s8adlf334gl8yararj1fpxbg3gy7h69s554m4h878awk"; depends=[ggplot2 gridExtra MASS]; broken = true; }; games = derive2 { name="games"; version="1.1.2"; sha256="01hbbr2hsxi5j9axpdl0jihpd55pa9hacjxmab8p7cixk3xqqqbf"; depends=[Formula MASS maxLik stringr]; broken = true; }; @@ -20670,6 +20949,7 @@ in with self; { getlandsat = derive2 { name="getlandsat"; version="0.2.0"; sha256="15450v93lc4i2qda0zlb5vplwbarkmf3f6sb4rlrdpv9vlj85hff"; depends=[crul data_table rappdirs readr tibble xml2]; broken = true; }; getpublist = derive2 { name="getpublist"; version="0.1.0"; sha256="0p6l7qha6i7vhqvav74yxpa6qph35g41v00173mjjqsvyhd0qc5i"; depends=[dplyr magrittr rvest stringr tibble tidyr xml2]; broken = true; }; gfmR = derive2 { name="gfmR"; version="1.1-0"; sha256="0qzzbcra1fnbp0h31b1as20yhmqmi7p62xrhikj64an9avg9b277"; depends=[faraway nnet]; broken = true; }; + ggDCA = derive2 { name="ggDCA"; version="1.1"; sha256="0jpg7n6nk2jgq668ff0l9zk26zk39abc74f6w5x8gf4zsb8y0zp9"; depends=[base_rms do ggplot2 rms set survival]; broken = true; }; ggROC = derive2 { name="ggROC"; version="1.0"; sha256="0p9gdy7ia59d5m84z9flz5b03ri7nbigb3fav2v2wrml300d24vn"; depends=[ggplot2]; broken = true; }; ggbraid = derive2 { name="ggbraid"; version="0.2.2"; sha256="1y5yskhc63cprvdk1j7nhz8mz9i36qs8sqlr9h09yi172mp6ignn"; depends=[ggplot2]; broken = true; }; ggconf = derive2 { name="ggconf"; version="0.1.3"; sha256="0g4xasqhdiqfqahakv6p5npl56f2iakx4bnc9v9zcjr077kdda4n"; depends=[ggplot2 rly]; broken = true; }; @@ -20678,25 +20958,29 @@ in with self; { gglogo = derive2 { name="gglogo"; version="0.1.5"; sha256="08wg0svcksdzchp6bdllmsnklxia3d0ygqwzgmqb2sga8nbkf5hl"; depends=[dplyr ggplot2 jpeg knitr magrittr plyr purrr reshape2 rlang tidyr]; broken = true; }; ggloop = derive2 { name="ggloop"; version="0.1.0"; sha256="0jpbgb16jfsv557zvishln98y7nd6p1ryp6hxkrkmhp9p35vzvc0"; depends=[assertthat ggplot2 lazyeval magrittr plyr]; broken = true; }; ggpacman = derive2 { name="ggpacman"; version="0.1.0"; sha256="1040d6aciyllrpszh7l7y55fw4dx8cya2yvj0x4i2fibvygz83p6"; depends=[dplyr gganimate ggforce ggplot2 magrittr purrr rlang tidyr]; broken = true; }; + ggtern = derive2 { name="ggtern"; version="3.4.1"; sha256="0w0kg6755kfpczqpaly251fgqv31js9gdzr17x734l2adycji3yr"; depends=[compositions ggplot2 gridExtra gtable hexbin latex2exp lattice MASS plyr proto scales]; broken = true; }; ghee = derive2 { name="ghee"; version="0.1.0"; sha256="0b3czx2ibi5p8xl7i36zxnab032vrkh5bv204r7wgg1xpx8pdlra"; depends=[gh jsonlite]; broken = true; }; gibbs_met = derive2 { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; broken = true; }; giphyr = derive2 { name="giphyr"; version="0.2.0"; sha256="0273f7lama8bhaalafs66m6ksp32vx0j6rmh1qr4484i7wkmdfqn"; depends=[dplyr httr miniUI purrr rstudioapi shiny tibble]; broken = true; }; + gitgadget = derive2 { name="gitgadget"; version="0.7.6"; sha256="0x30asifnyrvsp0wqrc5xwszsbzrwys9m98b01sfkv8kbg2z45am"; depends=[callr curl dplyr jsonlite markdown miniUI rstudioapi shiny shinyFiles usethis]; broken = true; }; glacierSMBM = derive2 { name="glacierSMBM"; version="0.1"; sha256="0117fzz2b1lccs0kkwz59w2yysi72j54yvz7373pz11w7rjds84f"; depends=[raster sp udunits2]; broken = true; }; glmdisc = derive2 { name="glmdisc"; version="0.6"; sha256="031rz3s5d7hz9fzmsj7aqhzwrn05rnfvk9292k2r0qpr6k02mk3b"; depends=[caret dplyr gam magrittr MASS nnet Rcpp RcppEigen RcppNumerical]; broken = true; }; glmdm = derive2 { name="glmdm"; version="2.60"; sha256="09vljki24fccqkvxkmg2i6a8pxqhfwm155b41m2q51lqaq29bfw7"; depends=[]; broken = true; }; glmmsr = derive2 { name="glmmsr"; version="0.2.3"; sha256="1fbg5zji0xjr9q1yc6phsp37nsrj7nfs8yiri0j9s84wzgwjili1"; depends=[BH lme4 Matrix numDeriv R6 Rcpp RcppEigen]; broken = true; }; + glmnetr = derive2 { name="glmnetr"; version="0.1-2"; sha256="1m3xlzcv60l6wb7d6xbk60sdg3npq1ly7i7i9j45ndj28yb6yr6k"; depends=[glmnet Matrix rpart survival]; broken = true; }; globalGSA = derive2 { name="globalGSA"; version="1.0"; sha256="1f3xv03m6g2p725ff0xjhvn2xcfm7r7flyrba080i4ldy6fd8jg8"; depends=[]; broken = true; }; glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; broken = true; }; - gmGeostats = derive2 { name="gmGeostats"; version="0.11.2"; sha256="182sqhlnvax09jbz53bfgp9wr9f309y84zk6dfgkj8la5yz273ni"; depends=[boot compositions foreach gstat RColorBrewer sp]; broken = true; }; goldi = derive2 { name="goldi"; version="1.0.1"; sha256="191ac02bwrxr3khq6qirhxzfhv7pqfhqyg7jb473p5vwygpvc53l"; depends=[dplyr futile_logger magrittr Rcpp RcppArmadillo SnowballC tm]; broken = true; }; + googlePrintr = derive2 { name="googlePrintr"; version="0.0.1"; sha256="19rm78x8qd61ilc6h1kn3dw63m6dfsckqkd3n76krvi0akgl72w5"; depends=[googleAuthR httr jsonlite]; broken = true; }; googlesheets = derive2 { name="googlesheets"; version="0.3.0"; sha256="11q07nxys72wkxx9mawmjyf20gvwvrb7h3gpa73h6lgh2vgrwnv8"; depends=[cellranger dplyr httr jsonlite purrr readr stringr tibble tidyr xml2]; broken = true; }; gpclib = derive2 { name="gpclib"; version="1.5-6"; sha256="11jjgg74l8hy9jz4jylhriqnzv8jcf12y1bkx22v29z3fhgkwkps"; depends=[]; broken = true; }; - gps = derive2 { name="gps"; version="1.0"; sha256="1yzmv0zpgnis3v2f7m9j02zxw31kgcw9fny3vrvk4637jzz2ij56"; depends=[Matrix]; broken = true; }; + gppm = derive2 { name="gppm"; version="0.2.0"; sha256="1n9is3xj52lsck2fiy9j320p2ca6ib36s251i7g3iz99a77b0ahh"; depends=[ggplot2 ggthemes MASS mvtnorm Rcpp rstan]; broken = true; }; gptk = derive2 { name="gptk"; version="1.08"; sha256="0fk6c8f8fni4y2n2cbfwywlfyz74xlb8lx25wajsxr2v4x74pa7l"; depends=[fields Matrix]; broken = true; }; gradDescent = derive2 { name="gradDescent"; version="3.0"; sha256="1jxgvnjw9qk5bkb0fw4kyks4vb9d1933jn79ry0w6956mq2xbb79"; depends=[]; broken = true; }; grainchanger = derive2 { name="grainchanger"; version="0.3.2"; sha256="1anq9gmbf9cjh6f9q2h7f65j220f56rmb59zhp5j2d26bs7dbnz8"; depends=[checkmate furrr raster sf usethis]; broken = true; }; graphscan = derive2 { name="graphscan"; version="1.1.1"; sha256="1dgjb0grdymhimdgwnddjcivgy2i9r1i1nni4v9mx0447skcahk9"; depends=[ape rgl snowfall sp]; broken = true; }; - gravity = derive2 { name="gravity"; version="1.0"; sha256="1xbdw1gl3vsjfg90bb1pqy4jhp2wd4ss96z2xd3pbgyanf6fkdkf"; depends=[censReg dplyr glm2 lmtest magrittr MASS multiwayvcov purrr Rdpack rlang sandwich survival tibble tidyr]; broken = true; }; + grattan = derive2 { name="grattan"; version="2.0.0.0"; sha256="067acsrxzdj4bxybyah4c5j8lzrj1vbmarpbngf4r59qnryj4bf8"; depends=[assertthat checkmate data_table fastmatch forecast fy hutils hutilscpp ineq magrittr zoo]; broken = true; }; + gremes = derive2 { name="gremes"; version="0.1.1"; sha256="1i3j23ssx0grkzq1qf4naiqrfd753m992pqhxy5y7c805acm77mj"; depends=[abind copula igraph mev mvtnorm quadprog]; broken = true; }; greyzoneSurv = derive2 { name="greyzoneSurv"; version="1.0"; sha256="115i0d4fy4p4g4vd419hj9f23hi8cbiyfilgpgmag91ilr1xpcdp"; depends=[Hmisc survAUC survival]; broken = true; }; grouped = derive2 { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; broken = true; }; gset = derive2 { name="gset"; version="1.1.0"; sha256="1gingqw6la8n7mnl47wpz9sicxca4zi2m8p35n6cnihrniibhajc"; depends=[Hmisc MCMCpack mvtnorm]; broken = true; }; @@ -20716,13 +21000,12 @@ in with self; { hcp = derive2 { name="hcp"; version="0.1"; sha256="0hhcy70g13kclxv733kgiys7qn5bi28abpkli5n2vj0a58ac333m"; depends=[]; broken = true; }; hddtools = derive2 { name="hddtools"; version="0.9.4"; sha256="011yhs8c6riimz63pa2am56n5aip2yk5gryx2amvk29pzp1v6my9"; depends=[curl raster readxl rgdal sp tidyr XML zoo]; broken = true; }; hdlm = derive2 { name="hdlm"; version="1.3.1"; sha256="1zl6bksw0apkmn5shf8qjpxjyx6vb40dc4m4db76hhn5nhcp10ic"; depends=[foreach glmnet iterators MASS Matrix]; broken = true; }; + hdtg = derive2 { name="hdtg"; version="0.2.0"; sha256="11shszhgpm8aka2awxyrnxpq8f8sdgw9b97mvdz5yb9xbm9kl57z"; depends=[mgcv Rcpp RcppEigen RcppParallel RcppXsimd Rdpack]; broken = true; }; healthcareai = derive2 { name="healthcareai"; version="2.5.1"; sha256="0ah855wvb2v8b8zz5a64q8psjrkpgq9xzyrla3mdpm5xx2gh0z0p"; depends=[caret cowplot data_table dplyr e1071 generics ggplot2 glmnet lubridate MLmetrics purrr ranger recipes rlang ROCR stringr tibble tidyr xgboost]; broken = true; }; healthforum = derive2 { name="healthforum"; version="0.1.0"; sha256="13ih00amv9hrpngm6pxc8vzqzhx8c0yqgaprxdcp5li90lg5r3av"; depends=[magrittr purrr rvest stringr tokenizers xml2]; broken = true; }; - healthyR = derive2 { name="healthyR"; version="0.2.0"; sha256="0fyaamw06kv2gsz2r9fiys2wf48h0k2x1z133682p3hs37g36kr0"; depends=[cowplot dplyr ggplot2 ggrepel lubridate magrittr plotly purrr rlang scales sqldf stringr tibble tidyr timetk writexl]; broken = true; }; - healthyR_ts = derive2 { name="healthyR.ts"; version="0.2.7"; sha256="0mlfg90103512dsdnrcxfqzpn3xgbrccq8pdby83khdirwybimkr"; depends=[cowplot dplyr forcats ggplot2 hardhat lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyr timetk workflowsets]; broken = true; }; - healthyverse = derive2 { name="healthyverse"; version="1.0.3"; sha256="1zb6nxmahyplk39hjl8pf16bvkyb26jp9bq8916cnkypwxrb7yhc"; depends=[cli crayon dplyr healthyR healthyR_ai healthyR_data healthyR_ts magrittr purrr rlang rstudioapi tibble tidyAML TidyDensity]; broken = true; }; heavy = derive2 { name="heavy"; version="0.38.196"; sha256="05k788ynw9fhhmjydzp8dbk1vhl44j2rz2shqwn02i40jmwdvwrk"; depends=[]; broken = true; }; helda = derive2 { name="helda"; version="1.1.5"; sha256="0wza0l52l4ijpasrm3czfncajvcc3p2y2ljmp61xxmn38hhvqyk9"; depends=[dplyr ggplot2 rlang sqldf stringr]; broken = true; }; + heritEWAS = derive2 { name="heritEWAS"; version="0.2.0"; sha256="0yss9vf2m9szq8xi5i2nhf85mfvzvhv6c1f4kvvb2z9lmaicjni5"; depends=[]; broken = true; }; hhcartr = derive2 { name="hhcartr"; version="1.0.0"; sha256="104xy3ihpi031pyzifnpc0jfq68gsbc12gzv6hp1vjrgy0nqw5l1"; depends=[bookdown captioner checkmate DiagrammeR DiagrammeRsvg ggplot2 hash Matrix rsvg]; broken = true; }; hiPOD = derive2 { name="hiPOD"; version="1.0"; sha256="1i15ickz2s0kffh99qq30pl5hsl0lbj0kp55jnbv4x72hndzhmla"; depends=[rgl]; broken = true; }; hier_part = derive2 { name="hier.part"; version="1.0-6"; sha256="15wlpb2rsn6am8galsbjiy4psp78nlv1x2hz3cnqbwj508w6gsj0"; depends=[betareg gtools MASS]; broken = true; }; @@ -20732,7 +21015,6 @@ in with self; { highD2pop = derive2 { name="highD2pop"; version="1.0"; sha256="1s4v6m2d3vzvxsgmjzczv1zj3kv3ygvv6gbkkbjwsdhkvc1rdmf0"; depends=[fastclime]; broken = true; }; hillmakeR = derive2 { name="hillmakeR"; version="0.2"; sha256="1baynibgn4xqmpsxna8irggxvdc484mq5nza00rwg58vh1bc7wzq"; depends=[]; broken = true; }; hit = derive2 { name="hit"; version="0.4.0"; sha256="1vyla7jlg61rlrmqjb1wya404xj90xys175h12qy30paxsl5icqz"; depends=[glmnet Rcpp speedglm]; broken = true; }; - hkevp = derive2 { name="hkevp"; version="1.1.4"; sha256="01m5yywi4vjnwhdayaqaqcp5lz70mllj5ifnwdb4c60wm9aby9pm"; depends=[Rcpp RcppArmadillo]; broken = true; }; hmgm = derive2 { name="hmgm"; version="1.0.3"; sha256="12gaz2pi9ny7y772yzrfvl02p3n89cq1l5dzmcksd172gv9ayyz1"; depends=[binaryLogic glmnet MASS Matrix nat Rcpp rgl]; broken = true; }; hmi = derive2 { name="hmi"; version="1.0.0"; sha256="0fjcw13mkxza6nkq3fhp188ga1sjspq1sc6wjm4hy13xh7vdjpqq"; depends=[boot broom_mixed coda linLIR lme4 MASS Matrix MCMCglmm mice msm mvtnorm nlme nnet ordinal pbivnorm rlang tmvtnorm]; broken = true; }; hmlasso = derive2 { name="hmlasso"; version="0.0.1"; sha256="0ydcyz9pw30ji8ghrvkgcbmp27d661vajl97b8cwis52605a3gfx"; depends=[BH MASS Matrix Rcpp RSpectra]; broken = true; }; @@ -20744,7 +21026,6 @@ in with self; { hsicCCA = derive2 { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; broken = true; }; hsm = derive2 { name="hsm"; version="0.2.0"; sha256="066shjikqrrkxpnra4zknax1a0sk5nx9ms1br58vwqqvqq479rym"; depends=[]; broken = true; }; hsmm = derive2 { name="hsmm"; version="0.4"; sha256="1fh8c5kfv4brygdq6bfkrhrhkm99mxl4ljb1mhp9nf2bjlla11mc"; depends=[mvtnorm]; broken = true; }; - htetree = derive2 { name="htetree"; version="0.1.14"; sha256="069l9cwc7m1fv0hqyrilyqxd42qfs6h7xaq283yn6kj9xlb265kq"; depends=[data_tree dplyr grf jsonlite Matching partykit Rcpp rpart rpart_plot shiny stringr]; broken = true; }; htmltab = derive2 { name="htmltab"; version="0.8.2"; sha256="09hnf339f3hzll7a0shq615h9d6f6xqrcv0c9iid6575m5qsallf"; depends=[httr XML]; broken = true; }; htmltidy = derive2 { name="htmltidy"; version="0.5.0"; sha256="1djkjff3750fm1sp54kf9cjvsqz2x7ia1ns12h5vqqcvwzfd0701"; depends=[htmltools htmlwidgets Rcpp XML xml2]; broken = true; }; htree = derive2 { name="htree"; version="2.0.0"; sha256="15bi5c2p4aghihp3k12s78447j2x9hbsaq56b5lc8jmd1vf0jdwb"; depends=[]; broken = true; }; @@ -20767,8 +21048,10 @@ in with self; { idbg = derive2 { name="idbg"; version="1.0"; sha256="1rxmj04hswxybrg7dfib3mjy8v8mdiv13zwbscp2q55z55hhf1m5"; depends=[]; broken = true; }; identity = derive2 { name="identity"; version="0.2-1"; sha256="1j5wb5cj5j49in2g6r1shdm4ri4cfzj22hpqazvcmq4dm291sdi9"; depends=[]; broken = true; }; ideq = derive2 { name="ideq"; version="0.1.4"; sha256="06xk9ghvh3fb79lbkmbqsk07xj06qaigiw41rzbi3bji3fjq1prw"; depends=[matrixcalc mvtnorm pdist Rcpp RcppArmadillo rgen]; broken = true; }; + idmTPreg = derive2 { name="idmTPreg"; version="1.1"; sha256="1329sjb4dnw3yiyg16whbj4l2v0kg8phg1x4ysvyp2kqkmw14yq6"; depends=[doParallel foreach survival]; broken = true; }; ifa = derive2 { name="ifa"; version="7.0"; sha256="1cxafd7iwvyidzy27lyk1b9m27vk785ipj9ydkyx9z1v0zna2wnl"; depends=[mvtnorm]; broken = true; }; ifultools = derive2 { name="ifultools"; version="2.0-26"; sha256="1lkmzrh65j6vdb8523axxk9gig5q4zxy08wiqsp16w482d2q2sl1"; depends=[MASS splus2R]; broken = true; }; + iheatmapr = derive2 { name="iheatmapr"; version="0.5.1"; sha256="1pwkwh7ljlpr6zyz6j8knpz3iw60xzkw8amc98x4pc2mw148jvzx"; depends=[fastcluster ggdendro htmlwidgets jsonlite knitr magrittr RColorBrewer scales]; broken = true; }; iilasso = derive2 { name="iilasso"; version="0.0.2"; sha256="043m1n5840459zsknkb54801apb0a2cqfprncmj2wp235rbqj832"; depends=[BH Matrix Rcpp]; broken = true; }; ilc = derive2 { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast rainbow survival]; broken = true; }; imfr = derive2 { name="imfr"; version="0.1.9.1"; sha256="1l1lvzvz9hsqwk60k2w8ry8mvgzj7wrd6ycfhgwv39xid9vk70g7"; depends=[dplyr httr jsonlite]; broken = true; }; @@ -20814,10 +21097,12 @@ in with self; { jSonarR = derive2 { name="jSonarR"; version="1.1.1"; sha256="054q3ly471xa64yyz2as6vkr440ip1y8n5wl6s3zbhqy3bqkdqif"; depends=[jsonlite RCurl]; broken = true; }; james_analysis = derive2 { name="james.analysis"; version="1.0.1"; sha256="1b2n4ds4ivfk564z87s2rxjl9j0y4drd3cmyv8jqpccmdvx1137d"; depends=[naturalsort rjson]; broken = true; }; jaod = derive2 { name="jaod"; version="0.3.0"; sha256="071j3xqk7gzsic1sk8v0pwmqv6pav0nj9vvbskss3l1gczy80dfr"; depends=[crul jsonlite tibble]; broken = true; }; + japanmesh = derive2 { name="japanmesh"; version="0.1.1"; sha256="1p6kssz0q2zjx7yd4x7jf56n62nx4g8gmbc8v2din1mgks4rm614"; depends=[dplyr geosphere lifecycle magrittr purrr rlang sf stringr tibble tidyr units vctrs]; broken = true; }; + jcolors = derive2 { name="jcolors"; version="0.0.4"; sha256="18dmjcrci0z1xy2kglrarzm0idr9g3nhbbw7f1ijls3i0piqdri6"; depends=[ggplot2 scales]; broken = true; }; jdx = derive2 { name="jdx"; version="0.1.4"; sha256="0jqf0nkdyv9g4rifzlkls0n64fdcma2yphwl478772jlgfmxm2jb"; depends=[rJava]; broken = true; }; jjAnno = derive2 { name="jjAnno"; version="0.0.3"; sha256="1xqkkqzdalpzc9d9kibc7b2lfmpzxn84f9y8pl1wjs7ins4dhsck"; depends=[dplyr ggiraphExtra ggplot2 magick magrittr]; broken = true; }; joineRmeta = derive2 { name="joineRmeta"; version="0.1.2"; sha256="0lkj3rry8kvdcl3dxrkvnql8rl3fsgc4lk5qdifhl41aws2q7ccs"; depends=[ggplot2 gridExtra gtools JM joineR lme4 MASS Matrix meta msm statmod survival]; broken = true; }; - jointPm = derive2 { name="jointPm"; version="2.3.1"; sha256="1c2cn9sqwfyv9ksd63w8rrz0kh18jm2wv2sfdkgncjb7vfs4hbv9"; depends=[]; broken = true; }; + jsontools = derive2 { name="jsontools"; version="0.1.0"; sha256="13i1g8lmzgs7hd0xay4gm8z2myzbjzi73fwp9x4f4f9mywj7zl5s"; depends=[bit64 DBI glue jsonlite magrittr pillar purrr rlang RSQLite tibble tidyselect vctrs withr]; broken = true; }; jsr223 = derive2 { name="jsr223"; version="0.3.4"; sha256="0rir9v0qhnbl2rgkx1qz2ydj68ba9ccbdzsg6y1acczdhpl03j51"; depends=[curl jdx R6 rJava]; broken = true; }; jtrans = derive2 { name="jtrans"; version="0.2.1"; sha256="18zggqdjzjhjwmsmdhl6kf35w9rdajpc2nffag4rs6134gn81i3m"; depends=[]; broken = true; }; kaps = derive2 { name="kaps"; version="1.0.2"; sha256="0jg4smbq51v88i3815icb284j97iam09pc52rv3izxa57nv9a0gz"; depends=[coin Formula survival]; broken = true; }; @@ -20828,7 +21113,6 @@ in with self; { kerasR = derive2 { name="kerasR"; version="0.8.1"; sha256="0h278g3s6awbnq05n4fi80h80yrikybqccq23wzk3m08p5h9ay6f"; depends=[reticulate]; broken = true; }; kerdiest = derive2 { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[chron date evir]; broken = true; }; kernelPSI = derive2 { name="kernelPSI"; version="1.1.1"; sha256="1gnp3ixqmijy6xanlc4l8255biwxmlfyhd3y68arry9rzfjkmxpz"; depends=[CompQuadForm kernlab lmtest pracma Rcpp RcppArmadillo]; broken = true; }; - kgrams = derive2 { name="kgrams"; version="0.1.2"; sha256="0m1cw55lr0bl83p379wh3103d1rw9933lvf457kvxy56r1164l2h"; depends=[Rcpp RcppProgress Rdpack rlang]; broken = true; }; kineticF = derive2 { name="kineticF"; version="1.0"; sha256="1k54zikgva9fw9c4vhkc9b0kv8sq5pmc962s8wxr6qv97liv9p46"; depends=[circular lqmm MASS plotrix sp splancs]; broken = true; }; kmcudaR = derive2 { name="kmcudaR"; version="1.1.0"; sha256="16dkv9ag5375zc23nqakbg7v6knxvh1pips9rjsls0d7rw2bg1bs"; depends=[Rcpp RcppEigen]; broken = true; }; kmlShape = derive2 { name="kmlShape"; version="0.9.5"; sha256="1p35ihjq84jnzq78yksdblc0c1qcn13f8n4khddsxcqvk3a44xb1"; depends=[class kml lattice longitudinalData]; broken = true; }; @@ -20852,12 +21136,14 @@ in with self; { leafletR = derive2 { name="leafletR"; version="0.4-0"; sha256="0j1i971dl3smq8rcsa5s4rfmmk936k2q6xa4hppfzwhrxs3xkkkx"; depends=[brew jsonlite]; broken = true; }; learnstats = derive2 { name="learnstats"; version="0.1.1"; sha256="1sa064cr7ykl4s1ssdfmb3v1sjrnkbwdh04hmwwd9b3x0llsi9vv"; depends=[ggplot2 Rcmdr shiny]; broken = true; }; legco = derive2 { name="legco"; version="0.1.4"; sha256="0fd1d2zf510lyrwclsy57d8lgqprk6p8c6ghxglgm6gbx9d2yrgg"; depends=[dplyr httr jsonlite]; broken = true; }; + liGP = derive2 { name="liGP"; version="1.0.1"; sha256="01yhrzx67gz7j201mkv1aracrvjh4hxkrc7jn48cfwz0dp1lznws"; depends=[doParallel foreach hetGP laGP]; broken = true; }; libproj = derive2 { name="libproj"; version="8.1.0-1"; sha256="16mavs0kpbn1lskfgyzgw5ns270kdvvh2991c8w26cyl23zrcys6"; depends=[cpp11 rappdirs]; broken = true; }; libsoc = derive2 { name="libsoc"; version="0.7.3"; sha256="0baglknb67gmzr4cimlvz44f11np8glcdjdgs3jy8qlz0c8pm95p"; depends=[]; broken = true; }; likeLTD = derive2 { name="likeLTD"; version="6.3.0"; sha256="1mjf4667xd9pf2684d7vqaj54l5s9pgljn4vkfp32wzbfknq6y8r"; depends=[DEoptim gdata ggplot2 gtools rtf]; broken = true; }; limitplot = derive2 { name="limitplot"; version="1.2"; sha256="0wj1xalm80fa5pvjwh2zf5hpvxa3r1hnkh2z9z285wkbrcl0qfl2"; depends=[]; broken = true; }; linLIR = derive2 { name="linLIR"; version="1.1"; sha256="1v5bwki5j567x2kndfd5nli5i093a33in31025h9hsvkbal1dxgp"; depends=[]; broken = true; }; linear_tools = derive2 { name="linear.tools"; version="1.3.0"; sha256="14lp3gifzbid82lkr7rdqajz2abp8m7y8irpwx6s8w66djjfckda"; depends=[ggplot2 magrittr plyr pryr scales stringr]; broken = true; }; + linearQ = derive2 { name="linearQ"; version="2.0"; sha256="0sx7bx0x1k193day5w1dbmc09kn5741pcilxijjn2y5aijhd5wk9"; depends=[Rcpp stepR]; broken = true; }; linkim = derive2 { name="linkim"; version="0.1"; sha256="0yvyid9x59ias8h436a202hd2kmqvn8k1zcrgja2l4z2pzcvfn91"; depends=[]; broken = true; }; lisp = derive2 { name="lisp"; version="0.1"; sha256="025sq46277q9i21189cbmx5dnrh5wfshc5k6la1wjilhr1iqf6nj"; depends=[]; broken = true; }; listdtr = derive2 { name="listdtr"; version="1.1"; sha256="13p27cx2w3qb1rcizrva2ib7x7sm310gasi7n5pvvd8rkpwaypzq"; depends=[ggplot2]; broken = true; }; @@ -20869,17 +21155,17 @@ in with self; { lmec = derive2 { name="lmec"; version="1.0"; sha256="09shj01h2dl5lh7ch0wayr7qyhlmk0prv3p1vfgy91sn0wpbqlxr"; depends=[mvtnorm]; broken = true; }; lmem_qtler = derive2 { name="lmem.qtler"; version="0.1.1"; sha256="0qbllj66y294n1m8dsyrnwyvzscbzg8mb2dmjyghcrfaz925vkin"; depends=[lattice lme4 pastecs qtl stringr]; broken = true; }; lmvar = derive2 { name="lmvar"; version="1.5.2"; sha256="0wrny8yzk5y4mzpri6xv5wibbnbaxm0195lcbk5jrl5l5gs99bn6"; depends=[Matrix matrixcalc maxLik]; broken = true; }; + loadflux = derive2 { name="loadflux"; version="0.0.2"; sha256="08lbpd0nwwck36bkklmqx62lyj9p1ywwk80v1qx7f6zhgfjx8pj4"; depends=[dplyr dygraphs ggplot2 lubridate rlang tidyr tsibble xts zoo]; broken = true; }; logcondens_mode = derive2 { name="logcondens.mode"; version="1.0.1"; sha256="1i2c2prk5j863p3a3q3xnsv684igfi5czz3dib7zfjldpf0qyaq7"; depends=[distr logcondens]; broken = true; }; longclust = derive2 { name="longclust"; version="1.2.3"; sha256="1g45d5pak2vhbjrcmxxrk9jyrdxkqwy45phzpsw6b2bjyrgr4i7g"; depends=[]; broken = true; }; - longitudinalcascade = derive2 { name="longitudinalcascade"; version="0.3.2.1"; sha256="03nqglxyz6qfalxdnyh2aarxv3agn0b3r4nhsji4v9703h4m1fvg"; depends=[dplyr ggplot2 lubridate rlang scales survival tidyr zoo]; broken = true; }; loop = derive2 { name="loop"; version="1.1"; sha256="1gr257fm92rfh1sdhsb4hy0fzwjkwvwm3v85302gzn02f86qr5dm"; depends=[MASS]; broken = true; }; loose_rock = derive2 { name="loose.rock"; version="1.2.0"; sha256="13p3mp8m2in3cbcwgj42hgzrwxmgalc2v0z3r1zn1n77iqjvcd7r"; depends=[digest dplyr futile_options ggplot2 httr MASS reshape2]; broken = true; }; lpbrim = derive2 { name="lpbrim"; version="1.0.0"; sha256="1cbkzl23vgs9hf83ggkcnkmxvvj8867k5b9vhfdrznpqyqv1f2gp"; depends=[Matrix plyr RColorBrewer]; broken = true; }; + lpjmlkit = derive2 { name="lpjmlkit"; version="1.0.11"; sha256="0znkzpa4ydakn3sxs6pvg6kx6fsvpa2g0prbklk9w26c9m3kaac7"; depends=[abind doParallel dplyr foreach jsonlite magrittr processx rlang tibble withr]; broken = true; }; lpmodeler = derive2 { name="lpmodeler"; version="0.2-1"; sha256="17k67l03dkjx61p4hwswghjm6awk0zx173x9xafxrfd8jrgsf6kf"; depends=[slam]; broken = true; }; lsdv = derive2 { name="lsdv"; version="1.1"; sha256="0rl1xszr9r8v71j98gjpav30n2ncsci19hjlc9flzs1s20sb1xpr"; depends=[]; broken = true; }; lshorth = derive2 { name="lshorth"; version="0.1-6"; sha256="0nbjakx0zx4fg09fv26pr9dlrbvb7ybi6swg84m2kwjky8399vvx"; depends=[]; broken = true; }; ltbayes = derive2 { name="ltbayes"; version="0.4"; sha256="0kv5k56hmc1m7bv5pmmmk46822szsgwqgpwydn0x56az7xn6hjk6"; depends=[mcmc MHadaptive numDeriv]; broken = true; }; - ltmle = derive2 { name="ltmle"; version="1.2-0"; sha256="1mqrf77319cjs3q48iigrkjc3rjibz7qyij49a7l0nim3c1hd0b0"; depends=[Matrix matrixStats speedglm]; broken = true; }; ltsbase = derive2 { name="ltsbase"; version="1.0.1"; sha256="16p5ln9ak3h7h0icv5jfi0a3fbw5wdqs3si69sjbn8f5qs2hz7yp"; depends=[MASS robustbase]; broken = true; }; lxb = derive2 { name="lxb"; version="1.5"; sha256="16x1mvhxqhvibzmv6mlqcmkgic2sha1xagf7r2azmn4z8x1m9w6n"; depends=[]; broken = true; }; lymphclon = derive2 { name="lymphclon"; version="1.3.0"; sha256="1jns41sk2rx1j3mg06dzy434k30gpfhbkn6s47fmyv1y8701vfl0"; depends=[corpcor expm MASS]; broken = true; }; @@ -20907,6 +21193,7 @@ in with self; { mcll = derive2 { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[locfit statmod]; broken = true; }; mcsm = derive2 { name="mcsm"; version="1.0"; sha256="13sx7s3ywis5n4a70ld2szld9fb8jkfsc82dy6iskhy17vy8pml0"; depends=[coda MASS]; broken = true; }; meaRtools = derive2 { name="meaRtools"; version="1.0.4"; sha256="1nxyvdq4670696mhg0svxxlvk9hnr8szai8b18pw6754kmw1bjvn"; depends=[emdist ggplot2 gridExtra gtools lattice plyr Rcpp reshape2]; broken = true; }; + medflex = derive2 { name="medflex"; version="0.6-7"; sha256="171vp0wmmmbz42xcwjy065vhvig49s4ac2hzawfww2mvpfj0g0fj"; depends=[boot car Matrix multcomp sandwich]; broken = true; }; meditate = derive2 { name="meditate"; version="0.1.3"; sha256="02mgnbxlvi73zpnghlcx89jvri8144cf0bzq0hrbhh2nq2c1sdjg"; depends=[audio checkmate deldir wesanderson]; broken = true; }; medmod = derive2 { name="medmod"; version="1.0.0"; sha256="1f7bzdcjnbz9izlfblxcaa85qxx8kzn62qgjd3qlb7jl7mdy5q54"; depends=[ggplot2 jmvcore lavaan R6]; broken = true; }; mergedblocks = derive2 { name="mergedblocks"; version="1.1.0"; sha256="0hgfyb99hdph4rx32072v40j3z56bwl8lvpxqmms783b997alaml"; depends=[randomizeR]; broken = true; }; @@ -20918,12 +21205,13 @@ in with self; { meteogRam = derive2 { name="meteogRam"; version="1.0"; sha256="167gyxjnl4dyfqs3znv8sdpkvpqdxzdqi1g730s30gycrm9snap9"; depends=[ggplot2 RadioSonde]; broken = true; }; mfbvar = derive2 { name="mfbvar"; version="0.5.6"; sha256="1wv46h6cr0xnvr8dxymx362skf7nf77yw84y6g48rj9mbq8kkkcj"; depends=[dplyr ggplot2 GIGrvg lubridate magrittr Rcpp RcppArmadillo RcppParallel RcppProgress stochvol tibble zoo]; broken = true; }; mfe = derive2 { name="mfe"; version="0.1.5"; sha256="1pw9gw9bd778s57dyjwbmrmsla4m8dkf8g49gplv4zrsvlgsgbr3"; depends=[cluster clusterCrit e1071 ECoL infotheo MASS rpart rrcov]; broken = true; }; - mgee2 = derive2 { name="mgee2"; version="0.2"; sha256="1bhjajcjvm8brc92v6ij378i0d3vniip77m4pz7n02sgswj0w61a"; depends=[ggplot2 MASS]; broken = true; }; mgpd = derive2 { name="mgpd"; version="1.99"; sha256="0cxpgza9i0hjm5w1i5crzlgh740v143120zwjn95cav8pk8n2wyb"; depends=[corpcor evd fields numDeriv]; broken = true; }; miRada = derive2 { name="miRada"; version="1.13.8-8"; sha256="1m6rm65pv4r16r0s5ih69nr3v2rnpsvpdpk07pi7k4f7v9wck71v"; depends=[]; broken = true; }; miceMNAR = derive2 { name="miceMNAR"; version="1.0.2"; sha256="1s607icaf3c25mn8xdi3zkzmm8m7qd9a6vjdlz5j7ig2gc9f2y2d"; depends=[GJRM mice mvtnorm pbivnorm sampleSelection]; broken = true; }; + microSTASIS = derive2 { name="microSTASIS"; version="0.1.0"; sha256="09zyf80l964lfil56vln70i0r2d8ry2ffx4zz3f3xcka22m94r78"; depends=[crayon fmsb future future_apply ggplot2 ggside progressr reshape2 stringr]; broken = true; }; microclustr = derive2 { name="microclustr"; version="0.1.0"; sha256="04xn8p4wgmxq1jbxawq0rhx6l7y1kddlbdfid8zsi4x4arkz7hvp"; depends=[Rcpp]; broken = true; }; microdemic = derive2 { name="microdemic"; version="0.6.0"; sha256="1w4zh0vagnar95l5b8cgmcvp8q7vk2iba5g8d8g2ywynqiqcx5fc"; depends=[crul data_table httpcode jsonlite tibble]; broken = true; }; + microsynth = derive2 { name="microsynth"; version="2.0.31"; sha256="0wmrp9igylzp4qbvdr13r2rxfkcq9xwg8gw29j1g6kcqyq4aflds"; depends=[boot kernlab LowRankQP nleqslv pracma survey]; broken = true; }; migrbc = derive2 { name="migrbc"; version="2.0.9"; sha256="1nbxdm70a9lvbp4sw78719hdpbqnziw1y7r4xk8i390q2c195am1"; depends=[dplyr futile_logger lubridate Rcpp stringr]; broken = true; }; minimist = derive2 { name="minimist"; version="0.1"; sha256="007y829d766b1v6wkrhk7pkg99r38bvmhc8bwvs8rs13dr7444ln"; depends=[V8]; broken = true; }; minval = derive2 { name="minval"; version="0.8-2"; sha256="06anbb90c8wg0374ykmb6chcwrcdyi903jkbrmrv3kgx511l699z"; depends=[]; broken = true; }; @@ -20937,7 +21225,6 @@ in with self; { mixlink = derive2 { name="mixlink"; version="0.1.5"; sha256="0ywgrcplhspc0x5fniw52xqz20y7j9mwgy4ky8lv3vii659mr52m"; depends=[mvtnorm numDeriv Rcpp RcppGSL]; broken = true; }; mixsep = derive2 { name="mixsep"; version="0.2.1-2"; sha256="1ywwag02wbx3pkd7h0j9aab44bdmwsaaz0p2pcqn1fs3cpw35wa2"; depends=[MASS RODBC tcltk2]; broken = true; }; mixtNB = derive2 { name="mixtNB"; version="1.0"; sha256="0lqbm1yl54zfs0xcmf3f2vcg78rsqyzlgvpydhmhg7x6dkissb22"; depends=[]; broken = true; }; - mixtur = derive2 { name="mixtur"; version="1.2.0"; sha256="1kdzhjad6bwg6ga4bm545iw147h6zhj1a038ajlnbgynd9j8h8nh"; depends=[dplyr ggplot2 RColorBrewer rlang tidyr]; broken = true; }; mkde = derive2 { name="mkde"; version="0.1"; sha256="04v84arpnmjrkk88ffphnhkz32x7y0dypk75jfmbbgcgv59xlglv"; depends=[raster Rcpp sp]; broken = true; }; mlbstatsR = derive2 { name="mlbstatsR"; version="0.1.0.3"; sha256="0rcjfbi383rdk2fyrw47ni0jrzp7yj2sr8xzxvk3gmh321i3pn5d"; depends=[dplyr ggplot2 ggtext glue httr janitor jsonlite purrr rvest stringr tibble tidyr xml2]; broken = true; }; mleap = derive2 { name="mleap"; version="1.1.0"; sha256="0s15srbnk8fs5vj12gdszpg6g563q17v42fng2rydkgi4q7m2vj6"; depends=[digest fs jsonlite purrr rJava sparklyr tibble]; broken = true; }; @@ -20951,13 +21238,13 @@ in with self; { moc = derive2 { name="moc"; version="2.0"; sha256="0fgp8dg9qf7aw1qawmszlxs4bcccqmd87y4kkzdqggm807c2k5gh"; depends=[]; broken = true; }; modcmfitr = derive2 { name="modcmfitr"; version="0.1.0"; sha256="1d6fi7pc10w2a97h1prhkg5cvzmxjp11c5bwrz90zry0m8anwjyh"; depends=[gtools nloptr]; broken = true; }; modelROC = derive2 { name="modelROC"; version="1.0"; sha256="0iyx7c98ym7dy6pfssj7474h9wjpzjwy0fyc5bnqyi1lmjgd508k"; depends=[do ggplot2 ROCit survivalROC tmcn]; broken = true; }; - modelfree = derive2 { name="modelfree"; version="1.1-1"; sha256="0ammka2wxx90z31zfzypw9dk5n118l0vxhykxbx6srfig2vdyn82"; depends=[PolynomF SparseM]; broken = true; }; - modeltime_ensemble = derive2 { name="modeltime.ensemble"; version="1.0.2"; sha256="1yywl3vnc03wbz9fl3gq9cclvx8rsvnndyqb6d4ws9y5g60hnxhd"; depends=[cli doParallel dplyr foreach generics glue magrittr modeltime modeltime_resample parsnip purrr recipes rlang rsample stringr tibble tictoc tidyr timetk tune workflows yardstick]; broken = true; }; + modelgrid = derive2 { name="modelgrid"; version="1.1.1.0"; sha256="1z6g0akczry7vldkk6anfq572zbsfzbd6qnyllgjpbxhy3rrrq0r"; depends=[caret dplyr ggplot2 lattice magrittr purrr]; broken = true; }; modeltime_gluonts = derive2 { name="modeltime.gluonts"; version="0.1.0"; sha256="1nivqpdyr2s6q70bixna0a18gbhrf1r20vm0gj8b51idjignwpp7"; depends=[dplyr forcats fs glue magrittr modeltime parsnip purrr reticulate rlang stringr tibble tidyr timetk]; broken = true; }; modeltime_h2o = derive2 { name="modeltime.h2o"; version="0.1.1"; sha256="0rg7ha1zy0a1fbwrljsglfnfgkl747hjga8xajlzyrczhrmh4vnk"; depends=[dplyr fs glue h2o magrittr modeltime parsnip purrr rlang stringr tibble tidyr timetk]; broken = true; }; - modeltime_resample = derive2 { name="modeltime.resample"; version="0.2.2"; sha256="0gqzxay45k5h4m1vq582w5d8c3xif16yk36w35qjjnqknwhyj065"; depends=[cli crayon dials dplyr forcats ggplot2 glue hardhat magrittr modeltime parsnip plotly progressr purrr recipes rlang rsample stringr tibble tictoc tidyr timetk tune workflows yardstick]; broken = true; }; + moderate_mediation = derive2 { name="moderate.mediation"; version="0.0.2"; sha256="178xkw125qjvzp5zb37hd75js4spf129jfms6cdqcm7r25p77zdy"; depends=[cowplot distr doSNOW foreach ggplot2 mvtnorm reshape2 scales]; broken = true; }; modiscloud = derive2 { name="modiscloud"; version="0.14"; sha256="0vwhfp50yb21xkanvzk983vk0laflv60kj1ybx3fydfljwqx0rwj"; depends=[date raster rgdal sfsmisc sp]; broken = true; }; moezipfR = derive2 { name="moezipfR"; version="1.0.2"; sha256="0sfl1c7cvm1milcglcvz9lyvgricsdm7shx0jxyn50y7xz0padww"; depends=[tolerance VGAM]; broken = true; }; + molic = derive2 { name="molic"; version="2.0.3"; sha256="1qgb63wl5726mypv0f07wcf3aznl93vh045ghx66hiqj3kzfir2b"; depends=[doParallel ess foreach ggplot2 ggridges Rcpp]; broken = true; }; mopsocd = derive2 { name="mopsocd"; version="0.5.1"; sha256="10hssnm1afqmxa9kw6ifqnz3p3yyjrmxgi98zlj31a5g4nis8wb1"; depends=[]; broken = true; }; morgenstemning = derive2 { name="morgenstemning"; version="1.0"; sha256="17y90cf8ajmkfwla0hm4jgkbkd1mxnym63ph2468sfxkhn0r3v88"; depends=[]; broken = true; }; mosaic_find = derive2 { name="mosaic.find"; version="0.1.2"; sha256="1fzgksh8sp701qjfrvjl2bg967qjkjpilxsfkrazhw71cgmzjgjl"; depends=[minpack_lm]; broken = true; }; @@ -20992,8 +21279,10 @@ in with self; { multiversion = derive2 { name="multiversion"; version="0.3.6"; sha256="1gcr4p2kwyyi1skkq1b5ian0flfviyrhh14i66jajyc2qdxfqfic"; depends=[]; broken = true; }; multiviewtest = derive2 { name="multiviewtest"; version="2.0.1"; sha256="1jnb9l9nqnciczgxy9k7fq66rycbq0gr4sjdc2ck274jisj5bbaq"; depends=[doParallel foreach irlba Matrix matrixStats mclust randnet]; broken = true; }; muma = derive2 { name="muma"; version="1.4"; sha256="0midx3wzyvcz8rk9kvsfll3xg41pkz40si4jw2ps54ykkf9rkm99"; depends=[bitops car caTools gplots gtools mvtnorm pcaPP pdist pls robustbase rrcov]; broken = true; }; + mumm = derive2 { name="mumm"; version="0.2.1"; sha256="1wjg2pqn2wb9hk9mqgpi3k26qwjnkmp4apx09lxcwrz35bbwhfzv"; depends=[lme4 Matrix Rcpp RcppEigen stringr TMB]; broken = true; }; musicNMR = derive2 { name="musicNMR"; version="0.0.2"; sha256="09xxc78ajk428yc3617jfxqp5fy89nfc24f1rig6cw28fflwqj0k"; depends=[seewave]; broken = true; }; mut = derive2 { name="mut"; version="1.1"; sha256="0v0vviarsmaiap3fa82ia01cblana65fd3cbj7jkd3aral6pm6yz"; depends=[expm Familias IBDsim paramlink]; broken = true; }; + mvMonitoring = derive2 { name="mvMonitoring"; version="0.2.0"; sha256="0nfkcbi29fprz3mb7rrnn2rvixi4wmfmdsfsw219hj21vafk1bqz"; depends=[dplyr lazyeval plyr rlang robustbase xts zoo]; broken = true; }; mvc = derive2 { name="mvc"; version="1.3"; sha256="0kmh6vp7c2y9jf71f4a29b0fxcl0h7m4p8wig4dk3fi7alhjf7ym"; depends=[rattle]; broken = true; }; mvcluster = derive2 { name="mvcluster"; version="1.0"; sha256="0yfl31scdgsiljvpv1yxc5bwwzr6kbhpjwqh2kql7xf0m0hc1pr4"; depends=[Rcpp RcppArmadillo]; broken = true; }; mvprpb = derive2 { name="mvprpb"; version="1.0.4"; sha256="1kcjynz9s7vrvcgjb9sbqv7g50yiymbpkpg6ci34wznd33f7nrxm"; depends=[]; broken = true; }; @@ -21003,6 +21292,7 @@ in with self; { myepisodes = derive2 { name="myepisodes"; version="1.1.1"; sha256="0xk9bwgpl630nhc8qa2pc0rwqbqk3haxnp78gfxq6sn6z7i44k1p"; depends=[XML]; broken = true; }; mztwinreg = derive2 { name="mztwinreg"; version="1.0-1"; sha256="1rg6ikaqdrc7q44s3r3km8h45prnvcpzpxd7nxbmh209iz9j19ai"; depends=[mclogit rms]; broken = true; }; nCal = derive2 { name="nCal"; version="2021.9-12"; sha256="133dpy2rp8sabwdlk0wjxs9rzixzcja73im94qaw26z5xsnaydhf"; depends=[drc gdata gWidgets2 kyotil]; broken = true; }; + nCov2019 = derive2 { name="nCov2019"; version="0.4.6"; sha256="00jwywvb4prypn7cvwd1fb29jffvzdmg18axnl9ncncr0xjmvgx3"; depends=[downloader ggplot2 jsonlite RColorBrewer]; broken = true; }; nFCA = derive2 { name="nFCA"; version="0.3"; sha256="1jyyzagmppm3i7vh3ia4ic0zql1w04f66z81v0zpdihd4cbl5ra7"; depends=[]; broken = true; }; nVennR = derive2 { name="nVennR"; version="0.2.3"; sha256="035gblc8427v0vq288rib3jfpz5fmcpvqg6nfaijwmbkz3gd41b6"; depends=[Rcpp]; broken = true; }; nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; broken = true; }; @@ -21052,6 +21342,8 @@ in with self; { oncomodel = derive2 { name="oncomodel"; version="1.0"; sha256="1jyyq9znffiv7rg26mjldbwc5yi2f4f8npsd2ykhxyacb3g96fp1"; depends=[ade4]; broken = true; }; onepass = derive2 { name="onepass"; version="0.1.2"; sha256="1r8wk00aqc0sc7l6mmy1k4hkijfikynysrx5vvahbd6mlcdb3bmp"; depends=[jsonlite]; broken = true; }; onlineVAR = derive2 { name="onlineVAR"; version="0.1-1"; sha256="01z2d91mbdjvwwiqjq1dbqp50jbc9v6d7nw4gs7d1abhsqyiqa13"; depends=[lattice]; broken = true; }; + oops = derive2 { name="oops"; version="0.2.0"; sha256="0xg69riqphvsqqa953v4mlcakvl0invf29678nrljibg31n4wak5"; depends=[]; broken = true; }; + openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; broken = true; }; opentimsr = derive2 { name="opentimsr"; version="1.0.13"; sha256="0m4xp70cq4h76r4qk7krn5p9w3xv44z5lrkpys7kbvxr38g5y0il"; depends=[DBI Rcpp RSQLite]; broken = true; }; opentraj = derive2 { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; broken = true; }; optAUC = derive2 { name="optAUC"; version="1.0"; sha256="0j1llzqa3n7kqw3i5bb7284z0hi6s5jbjfl9zap0l7xf6hg4x1dn"; depends=[MASS]; broken = true; }; @@ -21060,13 +21352,13 @@ in with self; { optrees = derive2 { name="optrees"; version="1.0"; sha256="1zqpjii8dsfs98n58qpif81ckvyxkr0661svhlbgzi19xb2vszqs"; depends=[igraph]; broken = true; }; orQA = derive2 { name="orQA"; version="0.2.1"; sha256="0vivjrpcbql42y078gi91kfpfdpv73j23jkiv8fpazzwzdi8ydqq"; depends=[genefilter gtools nlme Rcpp]; broken = true; }; orderbook = derive2 { name="orderbook"; version="1.03"; sha256="0dlvjrzdhhh8js4g1lvxs46q7fdxfxavxnb4nj6xlwca75i51675"; depends=[hash lattice]; broken = true; }; - ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.7"; sha256="0c1a4ziyh6jcqnblvc97gpv7bqyhd56gmxxyn1jascpvs2xxq2qy"; depends=[survival]; broken = true; }; ordinalpattern = derive2 { name="ordinalpattern"; version="0.2.1"; sha256="1hlzi8rd24d9ab28dn70hf96d82r275l784ryk0c3hx574a1brlq"; depends=[gtools mvtnorm]; broken = true; }; osmar = derive2 { name="osmar"; version="1.1-7"; sha256="0q6d8nw7d580bnx66mjc282dx45zw9srczz90b520hjcli4w3i3r"; depends=[geosphere RCurl XML]; broken = true; }; osmgeosample = derive2 { name="osmgeosample"; version="0.1"; sha256="1vcdisf147mcdqkc35czcphjh6rhaix9vy6l5inknaarmmajri3x"; depends=[dplyr geoR mapview nngeo osmdata pdist processx qpdf Rcpp rgdal sf sp splancs tibble]; broken = true; }; osmose = derive2 { name="osmose"; version="3.3.4"; sha256="144mklbish59amzz7j95qmn98yqlz3bqzd2rp03wg9f5s69bxjj6"; depends=[fields knitr mgcv ncdf4 rlist rmarkdown stringr]; broken = true; }; osmplotr = derive2 { name="osmplotr"; version="0.3.3"; sha256="0p94phv7jn0q9k25300zz59ldfphm9xgy6i7n3r8xj4zay0c7mf2"; depends=[e1071 ggm ggplot2 mapproj osmdata rgeos sp spatstat spatstat_core spatstat_geom]; broken = true; }; ospsuite_utils = derive2 { name="ospsuite.utils"; version="1.2.0"; sha256="16gcqnkqz0nz7mhgbnji3p1k2vv43jypx2xbcz4i4d8v1368akly"; depends=[R6]; broken = true; }; + ot = derive2 { name="ot"; version="0.2.0"; sha256="0lym92hsxhfjdkh738rxlpkq084454055vgxm2b4wdhqw00jwf5y"; depends=[]; broken = true; }; otvPlots = derive2 { name="otvPlots"; version="0.2.1"; sha256="0fjx0kl9y77mazwy7lg4mxc9sg8ysvvbl4h3k6bvfpnjm5x62hff"; depends=[data_table ggplot2 gridExtra Hmisc moments quantreg scales stringi]; broken = true; }; outsider = derive2 { name="outsider"; version="0.1.1"; sha256="082yygvjs31clz8b3p59gkc26249gqp8hl1071gm6zi4vi2ng43x"; depends=[crayon curl jsonlite outsider_base remotes tibble yaml]; broken = true; }; outsider_base = derive2 { name="outsider.base"; version="0.1.4"; sha256="1wlr3a14a330r9p4lahdmgs4hbgfsp05rsbzr30djwpv21bfl03a"; depends=[callr cli crayon devtools pkgload sys tibble yaml]; broken = true; }; @@ -21088,6 +21380,7 @@ in with self; { param6 = derive2 { name="param6"; version="0.2.4"; sha256="0h4r2l670zvsbq0cakbm7f5yc0ghaf40kby80q3ql8lwgfnay1jd"; depends=[checkmate data_table dictionar6 R6 set6]; broken = true; }; parboost = derive2 { name="parboost"; version="0.1.4"; sha256="087b4as0w8bckwqpisq9mllvm523vlxmld3irrms13la23z6rjvf"; depends=[caret doParallel glmnet iterators mboost party plyr]; broken = true; }; parcoords = derive2 { name="parcoords"; version="1.0.0"; sha256="15w0g789a2igagfrgv1978ib4ipxpfkid5jpj4q344mpdvgp6ip2"; depends=[crosstalk htmlwidgets]; broken = true; }; + paropt = derive2 { name="paropt"; version="0.2.1"; sha256="0a9xd340lqmj32vzwbnrxqa3cklprpikr8f8d8xfj8n1cyw39jwl"; depends=[Rcpp RcppArmadillo]; broken = true; }; partialAR = derive2 { name="partialAR"; version="1.0.12"; sha256="0fv1ffgqdbl04b4cmfmvzwah8ms9cxx3dsdralkk92bxxhybcjsl"; depends=[data_table ggplot2 KFAS MASS plot3D Rcpp tseries urca zoo]; broken = true; }; partialCI = derive2 { name="partialCI"; version="1.2.0"; sha256="0hi936yg4g5bg61ix2i68f8q4c5nvvshl2728ynz1rl970qfcrp7"; depends=[data_table ggplot2 glmnet KFAS MASS partialAR Rcpp TTR zoo]; broken = true; }; partialOR = derive2 { name="partialOR"; version="0.9"; sha256="02vbvln8lswysaafpxq5rxb6crp7yhlc13i42kybv8fr10jaagjj"; depends=[nnet]; broken = true; }; @@ -21105,6 +21398,7 @@ in with self; { pds3 = derive2 { name="pds3"; version="0.5.0"; sha256="1hipi4ygk30khrrslxq3m9qdichazhrl34k444shs7gi6wjx9ilr"; depends=[rly]; broken = true; }; peakPick = derive2 { name="peakPick"; version="0.11"; sha256="1zf7ff9arm4hkdxrfhb0p8p7npd51icy773g2raaqsfys825xwhm"; depends=[matrixStats]; broken = true; }; pedigreeTools = derive2 { name="pedigreeTools"; version="0.1"; sha256="0kgbjyw9dlp4s91cyg5w0p2vn2h9pg9ixrhc5pwvkp3v1acd0xfm"; depends=[Matrix]; broken = true; }; + penDvine = derive2 { name="penDvine"; version="0.2.4"; sha256="0znpvsr7zy2wgy7znha1qiajcrz1z6mypi3f5hpims33z7npa7dl"; depends=[doParallel fda foreach lattice latticeExtra Matrix quadprog TSP]; broken = true; }; penalizedclr = derive2 { name="penalizedclr"; version="0.1.0"; sha256="0ka27azfdj4wa1p628b99pkrfjy1x8yjyd3d5g2v8mbsfg3j3bwg"; depends=[clogitL1 penalized survival tidyverse]; broken = true; }; perARMA = derive2 { name="perARMA"; version="1.6"; sha256="0k70lcqhiiffrwzvh51asnhx68qxpnjnxadarvgpgbc7kfy7lv9x"; depends=[corpcor gnm matlab Matrix signal]; broken = true; }; permGPU = derive2 { name="permGPU"; version="0.15"; sha256="1bxydc5dw7ka45k6ban35d5xb1dw9yq9480qns8b39cc0x3acmhc"; depends=[Biobase foreach RUnit survival]; broken = true; }; @@ -21112,14 +21406,16 @@ in with self; { pfocal = derive2 { name="pfocal"; version="1.0.0"; sha256="1flpzwv66q5rx6y2irck589svx7kmrcbymb6pn5s7p269skxh0p4"; depends=[Rcpp]; broken = true; }; ph2rand = derive2 { name="ph2rand"; version="0.1.0"; sha256="0k6azygcvzkirjx3vpx6kbhax1yai8r467kmmnvhh3p0v46mc5zp"; depends=[dplyr ggplot2 Rcpp scales tibble tidyr]; broken = true; }; phenability = derive2 { name="phenability"; version="2.0"; sha256="0can8qgdpfr4h6jfg23cnwh7hhmwv6538wg2jla9w138la7rhpd1"; depends=[calibrate]; broken = true; }; - phylocomr = derive2 { name="phylocomr"; version="0.3.3"; sha256="0l9ap65m927pqwxs051y4q7fmipn3kkpk1nkgis6q5fqgfxy0igi"; depends=[sys tibble]; broken = true; }; phyloland = derive2 { name="phyloland"; version="1.3"; sha256="10g40m6n2s4qvnzlqcwpy3k0j7bxdp79f586jj910b8p00ymrksp"; depends=[ape]; broken = true; }; physx = derive2 { name="physx"; version="1.0"; sha256="1b6bx08jzfg4pxicawkn013bqrvqkp19pigxl3iwjrqclvi8mx73"; depends=[celestial cubature data_table docore MASS pracma Rcpp]; broken = true; }; phytotools = derive2 { name="phytotools"; version="1.0"; sha256="049znviv2vvzv23biy1l28axm7bc7biwmq4bnn0cnjqgkk48ysz3"; depends=[FME insol]; broken = true; }; pinbasic = derive2 { name="pinbasic"; version="1.2.2"; sha256="0mcw68wrixz2jf62nfifdgg8bnp4h1p3byivz28wi61blj8iaa75"; depends=[fastcluster ggplot2 lubridate Rcpp reshape2 scales]; broken = true; }; + pinnacle_API = derive2 { name="pinnacle.API"; version="2.3.3"; sha256="1b6adns1xr3cgcj2mdjvl16cm2vjjgsj2l8m2c47plyc5jh05qmb"; depends=[data_table httr jsonlite magrittr openssl purrr rjson uuid]; broken = true; }; + pipenostics = derive2 { name="pipenostics"; version="0.1.7"; sha256="0c0qnh8kjgnmsg8arj7jhpdyjcdm58j9lzwi0yvl7ygk4k2klgv3"; depends=[checkmate]; broken = true; }; plRasch = derive2 { name="plRasch"; version="1.0"; sha256="1rnpvxw6pzl5f6zp4xl2wfndgvqz5l3kiv9sh4cpvhga0gl8zjaw"; depends=[survival]; broken = true; }; planar = derive2 { name="planar"; version="1.6"; sha256="0x5xdb2afpc1w8s217hy765mz938kg5b5j7vzqzhlsh2dzdjccpj"; depends=[cubature dielectric ggplot2 plyr Rcpp RcppArmadillo reshape2 statmod]; broken = true; }; plmm = derive2 { name="plmm"; version="0.1-1"; sha256="1dfxd1mqqjy2mf7qc6mh4wx5ya9q8fkqgrf01apisb66xxx5zya7"; depends=[Formula nlme sm]; broken = true; }; + plot3logit = derive2 { name="plot3logit"; version="3.1.3"; sha256="0p12xm7i9319h3rx732vh49gzz3f817mdwkp4y8ha6f7pf2fjwz8"; depends=[dplyr ellipse forcats generics ggplot2 ggtern lifecycle magrittr purrr Rdpack stringr Ternary tibble tidyr tidyselect]; broken = true; }; plsr = derive2 { name="plsr"; version="0.0.1"; sha256="0l413m49zjpb35v0zw8dlxn53nh7fghinbmwfmldl3jgdvay2s7x"; depends=[boot ggplot2 reshape2 shiny]; broken = true; }; plus = derive2 { name="plus"; version="1.0"; sha256="1l7lvnq7vahj8m7knmr4q3wj00ar7iq89j45a2dqn2bh0qyj68ls"; depends=[]; broken = true; }; pm4py = derive2 { name="pm4py"; version="1.2.7"; sha256="11xbsmsc9pxd98fy28l3nxzhb6c2pwvh1gmm34jnqn0rjbpb2n9i"; depends=[bupaR petrinetR purrr reticulate stringr]; broken = true; }; @@ -21135,12 +21431,13 @@ in with self; { popKorn = derive2 { name="popKorn"; version="0.3-0"; sha256="1zcl6ms7ghbcjyjgfg35h37ma8nspg15rk2ik82yalqlzxjf7kxw"; depends=[boot]; broken = true; }; popRF = derive2 { name="popRF"; version="1.0.0"; sha256="0w3w1ffyy5b8glviib7ryjqzhmfp5aw6am3z8qpvis6l745p7vgh"; depends=[doParallel foreach gdalUtils plyr quantregForest randomForest raster]; broken = true; }; portes = derive2 { name="portes"; version="5.0"; sha256="1iarvgz23979lipqyyvh8h0nd978p1nzbbjf020q11yqpl863502"; depends=[forecast]; broken = true; }; + postGIStools = derive2 { name="postGIStools"; version="0.2.4"; sha256="04d6iqnk7j2lgv1h5c94j6y89jk75pmv26sxa51s5iwkjq7rchym"; depends=[DBI jsonlite rgdal rgeos RPostgreSQL sp stringr]; broken = true; }; + povcalnetR = derive2 { name="povcalnetR"; version="0.1.1"; sha256="0ah6n3wpjiwyh0mancqqpvyknx25dxr13p0nqnrfzmhfwyaywar0"; depends=[dplyr httr js jsonlite memoise naniar purrr readr stringr tibble tidyr]; broken = true; }; powerAnalysis = derive2 { name="powerAnalysis"; version="0.2.1"; sha256="0cma4v402n6wcb2gy9g1ymydzh8vimy9nfrrn8xhnjsf7x6jh215"; depends=[]; broken = true; }; powerHaDeX = derive2 { name="powerHaDeX"; version="1.0"; sha256="188a09jnn8xr5jx1n785gghpn3k8cqkhp76m47gixh5n9v15lzzg"; depends=[checkmate data_table expm ggplot2 glmnet lme4 lmerTest nlme plyr Rcpp signal]; broken = true; }; prLogistic = derive2 { name="prLogistic"; version="1.2"; sha256="1abwz7nqkz2qbyqyr603kl9a3rkad3f4vxhck6a9kl80xrmfrj9s"; depends=[boot Hmisc lme4]; broken = true; }; pragma = derive2 { name="pragma"; version="0.1.3"; sha256="1n30a346pph4d8cj4p4qx2l6fnwhkxa8yxdisx47pix376ljpjfx"; depends=[]; broken = true; }; praktikum = derive2 { name="praktikum"; version="0.1"; sha256="0kkydgglvqw371fxh46fi86fmdndhwq1n8qj0ynbh2gz1cn86aw1"; depends=[]; broken = true; }; - predict3d = derive2 { name="predict3d"; version="0.1.3.3"; sha256="1kb3jacpgzln1ddnkfzhvfpzzf9wig60lppca6iy0fvq5cm8ddr4"; depends=[dplyr ggiraphExtra ggplot2 magrittr modelr moonBook plyr prediction purrr reshape2 rgl rlang stringr TH_data tidyr]; broken = true; }; predmixcor = derive2 { name="predmixcor"; version="1.1-1"; sha256="0v99as0dzn0lqnbbzycq9j885rgsa1cy4qgbya37bbjd01b3pykd"; depends=[]; broken = true; }; presser = derive2 { name="presser"; version="1.1.0"; sha256="1slkdfh0wq242adp6a60612sjz117bii3pbahn00bfmnpa9g1wya"; depends=[]; broken = true; }; prewas = derive2 { name="prewas"; version="1.1.1"; sha256="16dpwpks0sqfq7pdhbpipb8hnm2viic2dnz1g7v86ar51z8db4xk"; depends=[ape future future_apply phangorn vcfR]; broken = true; }; @@ -21165,7 +21462,6 @@ in with self; { pts2polys = derive2 { name="pts2polys"; version="0.1.3"; sha256="0rmgryv0vds20npvaqvvwrhrx0grfcz9qwdy2w3bx945r0chhw39"; depends=[Rcpp]; broken = true; }; pubchunks = derive2 { name="pubchunks"; version="0.3.0"; sha256="14jzl0ra0d68s246a9jhfgp1wyy9g7d0rzahvl97crkklld1crvx"; depends=[data_table rcrossref xml2]; broken = true; }; pvsR = derive2 { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; broken = true; }; - pycno = derive2 { name="pycno"; version="1.2"; sha256="0ha5css95xb98dq6qk98gnp1al32gy6w5fkz74255vs4hmkwfzw2"; depends=[maptools rgeos sp]; broken = true; }; qLearn = derive2 { name="qLearn"; version="1.0"; sha256="1ilxmgazm8gjz8c1hhbp4fccibnvnalxrag8b0rn081zsqmhf094"; depends=[]; broken = true; }; qmix = derive2 { name="qmix"; version="0.1.2.0"; sha256="172lhvj7adphxq9gws2i9lysc9bj1wpk60f4hf2h5sisnli15v0x"; depends=[BH Formula Rcpp RcppEigen rstan StanHeaders]; broken = true; }; qoma_smuggler = derive2 { name="qoma.smuggler"; version="0.0.1"; sha256="03p9i0kr6i3adpb9lcszcmdr9p26nfy7f8hw2sbydazglaw4hscr"; depends=[lubridate rhli tibble]; broken = true; }; @@ -21174,14 +21470,15 @@ in with self; { qtlDesign = derive2 { name="qtlDesign"; version="0.941"; sha256="138yi85i5xiaqrns4v2hw46b731bdgnb301wg2h4cfrxvrw4l0d5"; depends=[]; broken = true; }; quad = derive2 { name="quad"; version="1.0"; sha256="0fak12l19f260k0ygh6zimx8dabzsv7a9i2njw8hnfcs3ndffhv5"; depends=[PearsonDS]; broken = true; }; quantable = derive2 { name="quantable"; version="0.3.6"; sha256="15q4phc2j7aihl8f4qzpdwxcvshq2cfzkfcxc8k4qypsxk9a00sb"; depends=[caret dplyr e1071 ggplot2 ggrepel gplots Matrix plyr pROC RColorBrewer readr reshape2 rlang scales stringr tibble tidyr]; broken = true; }; + quickerstats = derive2 { name="quickerstats"; version="0.0.1"; sha256="0jlczz042701p6j4m60k425m9x3q88m27mmf62ngz80dylcl2fdx"; depends=[curl httr readr tibble]; broken = true; }; quokar = derive2 { name="quokar"; version="0.1.0"; sha256="1qnl3x1aa665xpyb3ac07xrnnjdwbmj645p103144k5is5b8likc"; depends=[ald ALDqr bayesQR dplyr ggplot2 GIGrvg gridExtra knitr magrittr MCMCpack purrr quantreg robustbase tidyr]; broken = true; }; - r_proxy = derive2 { name="r.proxy"; version="0.1.0"; sha256="0k7bcgp1d53ps6aalqz764v33mkamz5czdp72fc69zwrfb9rz63w"; depends=[curl jsonlite]; broken = true; }; r2dRue = derive2 { name="r2dRue"; version="1.0.4"; sha256="1apdq7zj5fhs349wm9g6y06nn33x24pg3gdp4z1frd18qlacf8z5"; depends=[matrixStats rgdal sp]; broken = true; }; r511 = derive2 { name="r511"; version="0.1.1"; sha256="1njsnjf0746cv6x7fznq4cg556fczqcfawwb869r3w9zv0zj1iy9"; depends=[assertthat dplyr httr tibble xml2]; broken = true; }; rAltmetric = derive2 { name="rAltmetric"; version="0.7.0"; sha256="1vbvjv273vg3pi30vxxa2bivlajfsbqrzflk3payp6ym9myi27mg"; depends=[httr jsonlite rlist]; broken = true; }; rAvis = derive2 { name="rAvis"; version="0.1.4"; sha256="0svplnrn8rrr59v04nr1pz7d5r4dr1kdl0bd3kg8c3azxv47mxbp"; depends=[gdata maptools raster RCurl rgdal scales scrapeR sp stringr XML]; broken = true; }; rClinicalCodes = derive2 { name="rClinicalCodes"; version="1.0.1"; sha256="1p4p8r2n0k8h9xdzbngb95rshjp3376f5lsx228biqmswhpkhvlf"; depends=[RCurl rjson stringr tm XML]; broken = true; }; rDotNet = derive2 { name="rDotNet"; version="0.9.1"; sha256="18cd5373pdfi1x958llb4cgjqdi1fb7h7m5nkdwcd4xw9hxhinzd"; depends=[Rcpp testthat]; broken = true; }; + rDppDiversity = derive2 { name="rDppDiversity"; version="0.0.2"; sha256="0833v5wkamqipfxpsdxz040q6vlgg9qqpwiaivvh8ar5sci10v88"; depends=[Rcpp]; broken = true; }; rFDSN = derive2 { name="rFDSN"; version="0.0.0"; sha256="1ffiqpdzy4ipy2aci22zkih4373ifkjkpvsrza8awhyf9fwqwdsl"; depends=[XML]; broken = true; }; rFIA = derive2 { name="rFIA"; version="1.0.0"; sha256="13c50hn8fna9f5zwxp3nzpzvgv8aw5a5pxkpw6600yhmg1nmrwgp"; depends=[bit64 data_table dplyr dtplyr ggplot2 rlang sf stringr tidyr tidyselect]; broken = true; }; rForest = derive2 { name="rForest"; version="0.1.4"; sha256="0vk9sfnbzpjqh7mr3qwi5awlh8qc0h1i6qwbyv7qj72apy05s2d8"; depends=[alphashape3d geometry rgl sp]; broken = true; }; @@ -21199,12 +21496,12 @@ in with self; { rRofex = derive2 { name="rRofex"; version="2.0.6"; sha256="0yg3bxadgmn5d7bljzn9bjzy833lfi6bwz24z52f8qcbm1nqchgb"; depends=[dplyr glue httr jsonlite later lifecycle magrittr purrr rlang tibble tidyr websocket]; broken = true; }; rSPARCS = derive2 { name="rSPARCS"; version="0.1.0"; sha256="0k46nhkdn68c7h7bbbdfwl02bldi1m3m62zbp20kh8np9bxy1rnk"; depends=[data_table geosphere plyr raster sp spatialEco tigris]; broken = true; }; rSQM = derive2 { name="rSQM"; version="1.3.14"; sha256="0m69n2pnfv2085dln6p149a5gw0gif9xk00xmad5s9j68hwjdmym"; depends=[dplyr EcoHydRology ggplot2 gsubfn mise ncdf4 qmap reshape2 stringr yaml zoo]; broken = true; }; + rTLS = derive2 { name="rTLS"; version="0.2.5.6"; sha256="0xjcqmjq3s9bfzfzndj2fi3830c3p1rrjr511amp186wmfnslmyd"; depends=[alphashape3d boot data_table doSNOW foreach Rcpp RcppArmadillo RcppHNSW RcppProgress rgeos rgl sp]; broken = true; }; rWBclimate = derive2 { name="rWBclimate"; version="0.1.3"; sha256="0vs56hx7a85pw4jx8nb8bdlr9dbkl4zdhzhqsm0505xc3qz18vxh"; depends=[ggplot2 httr jsonlite plyr reshape2 rgdal sp]; broken = true; }; radix = derive2 { name="radix"; version="0.6"; sha256="0290n0yax8649srdjbq4439h0d9f6jsmxayyhp86igcnszcxilnb"; depends=[base64enc bookdown digest downloader htmltools jsonlite knitr lubridate mime png progress rmarkdown rprojroot rstudioapi stringr whisker xfun xml2 yaml]; broken = true; }; radmixture = derive2 { name="radmixture"; version="0.0.1"; sha256="0rs60xjd43lg5c9972qhpg6bsqfg2578qvrz7gz3bdip10jb1ryj"; depends=[magrittr MCMCpack plyr quadprog]; broken = true; }; randNames = derive2 { name="randNames"; version="0.2.3"; sha256="0vhzg14yg4c9inzxin8prfzh6nhf8fvbi4hbn122fyqyp5d6f8zi"; depends=[httr jsonlite tibble]; broken = true; }; randaes = derive2 { name="randaes"; version="0.3"; sha256="14803argy0xdd8mpn4v67gbp90qi2is4x6na9zw7i9pm504xji1x"; depends=[]; broken = true; }; - randnet = derive2 { name="randnet"; version="0.5"; sha256="131bkfzxjd3x02dj6wc2ilwpgymmm18apd4v1dd70ib4sibvir16"; depends=[AUC entropy irlba Matrix nnls poweRlaw pracma RSpectra]; broken = true; }; randomsearch = derive2 { name="randomsearch"; version="0.2.0"; sha256="0ywr4ms66p5nmq8bzy04gbvmpp0nhfyf8rvynhr2c4alqva9x3yi"; depends=[checkmate fs parallelMap ParamHelpers smoof]; broken = true; }; rangemap = derive2 { name="rangemap"; version="0.1.18"; sha256="17ycliswmsrc1rvyxj2ik2rs7f061dvam6ck0pm6myj52m2xg781"; depends=[concaveman dplyr maps maptools raster rgdal rgeos rgl rnaturalearthdata scales sf sp spatial]; broken = true; }; ranlip = derive2 { name="ranlip"; version="1.0.1"; sha256="04jh7m8gmz0b4h507amnj708sg5qf4fzawybss01681hsnb3swnz"; depends=[Rcpp]; broken = true; }; @@ -21216,6 +21513,7 @@ in with self; { rbace = derive2 { name="rbace"; version="0.2.2"; sha256="04jcbrcp0l1v2q8hhwr5w72spdja8r0fw71v68kx39yigy7m1sgp"; depends=[crul data_table tibble xml2]; broken = true; }; rbefdata = derive2 { name="rbefdata"; version="0.3.5"; sha256="12mcqz0pqgwfw5fmma0gwddj4zk0hpwmrsb74dvzqvgcvpfjnv98"; depends=[RColorBrewer RCurl rjson rtematres wordcloud XML]; broken = true; }; rbhl = derive2 { name="rbhl"; version="0.9.2"; sha256="0rs1mmah4yyy5dgz1lvzslm4dk53x0wpiy3742z3hwr8p4agnkqi"; depends=[crul jsonlite plyr tibble xml2]; broken = true; }; + rbison = derive2 { name="rbison"; version="1.0.0"; sha256="0g586hsqci4amci10zjq6xpjvxfjr6rv5i63vp85v3z6bkwfamwr"; depends=[crul data_table dplyr ggplot2 jsonlite mapproj plyr sp tibble]; broken = true; }; rbitcoinchartsapi = derive2 { name="rbitcoinchartsapi"; version="1.0.4"; sha256="0r272jvjh3rzch8dmn4s0a5n5k6dsir7pr4qswzfvafqjdiwjajz"; depends=[RCurl RJSONIO]; broken = true; }; rbundler = derive2 { name="rbundler"; version="0.3.7"; sha256="0wmahn59h9vqm6bq1gwnf6mvfkyhqh6xvdc5hraszn1419asy26f"; depends=[devtools]; broken = true; }; rcage = derive2 { name="rcage"; version="1.2"; sha256="1xa9hdzl3dkrhzjp3bng9pxip9c0crr6zh6iq5916h78nm5k7bir"; depends=[ClustGeo ff fields ggplot2 gridExtra LaplacesDemon MASS Matrix pracma raster rgeos rlang sf sp]; broken = true; }; @@ -21227,9 +21525,12 @@ in with self; { rcol = derive2 { name="rcol"; version="0.2.0"; sha256="1ypn5fiwhyvfnmjs2davqqhxf5pjg7f0101v40bqrv4jz563h5n1"; depends=[crul data_table glue jsonlite tibble]; broken = true; }; rcoreoa = derive2 { name="rcoreoa"; version="0.4.0"; sha256="0q5dprz0ag04w265bk7isd2lr61nahf223qza47m0izd9nyi9h8a"; depends=[crul hoardr jsonlite pdftools]; broken = true; }; rcosmo = derive2 { name="rcosmo"; version="1.1.3"; sha256="08zw2xnchima9gzjn3nchj8q1phf3cchq9340fffsac77l4am3mb"; depends=[cli entropy FITSio geoR mmap nnls Rcpp rgl tibble]; broken = true; }; + rcrypt = derive2 { name="rcrypt"; version="0.1.1"; sha256="002r5wr0bmqbj014iz8wacj883j6gqcxc786m6p9a7zdrjpx2pqi"; depends=[]; broken = true; }; rdaemon = derive2 { name="rdaemon"; version="1.0.6"; sha256="1qr6v7kgk9nd5qp96667x51331xmpp1yz1r190dgd1fqigw735s5"; depends=[base64enc futile_logger Rcpp]; broken = true; }; rdddr = derive2 { name="rdddr"; version="1.0.0"; sha256="0biq1nxfhkbmay70hfp5yg6zakzcdr7rp0x2zpmyq200cwyyr6lm"; depends=[broom dataverse DeclareDesign dplyr estimatr fabricatr generics ggplot2 prediction purrr randomizr readr rlang tibble tidyr]; broken = true; }; rdetools = derive2 { name="rdetools"; version="1.0"; sha256="0pkl990viv7ifr7ihgdcsww93sk2wlzp2cg931wywagfp8dijd02"; depends=[]; broken = true; }; + rdracor = derive2 { name="rdracor"; version="0.7.2"; sha256="006m1fppdfsmvyllks4x94z8v0q1d36m3af95yw53b1vrz6v9nvx"; depends=[data_table httr igraph jsonlite purrr Rdpack stringr tibble tidyr xml2]; broken = true; }; + read_dbc = derive2 { name="read.dbc"; version="1.0.5"; sha256="1vrvxkcrk3iw5am9rsadxzf0wsr7z2mdpa5wb0v9jbhda710b4yf"; depends=[foreign]; broken = true; }; readthat = derive2 { name="readthat"; version="0.0.1"; sha256="04vnpvfa8in3gxi6nv3si59hr8hj17wq3a5n8rnpiaczg46qr1dr"; depends=[curl Rcpp]; broken = true; }; regexTestR = derive2 { name="regexTestR"; version="0.1.3"; sha256="0nnp2xlrrywpi1lmj8ymsjgiqvq8777hhdgcwjq549m7whfw6lsg"; depends=[config data_table DT golem htmltools pkgload processx purrr RColorBrewer rvest shiny shinyBS shinythemes stringr tidyr xml2]; broken = true; }; regpro = derive2 { name="regpro"; version="0.1.1"; sha256="02axbq63hsqwg3q2ixr0lpsdai9q6wj57s5k1343q9m0pw90vr73"; depends=[denpro]; broken = true; }; @@ -21245,7 +21546,6 @@ in with self; { retractcheck = derive2 { name="retractcheck"; version="1.0.0"; sha256="1c4p8afh9g359s560sswcys3manc0lqvk0aqgvd09p4rpzls2dm7"; depends=[httr plyr textreadr]; broken = true; }; retrocombinator = derive2 { name="retrocombinator"; version="1.0.0"; sha256="0ci5cm9ml2gsn0n0scaahpfi8kyn6i0s3fb4mn7m9s83c0ls6xgv"; depends=[dplyr ggplot2 magrittr Rcpp rlang]; broken = true; }; reweight = derive2 { name="reweight"; version="1.2.1"; sha256="0fv7q1zb3f4vplg3b5ykb1ydwbzmiajgd1ihrxl732ll8rkkfa4v"; depends=[]; broken = true; }; - rfars = derive2 { name="rfars"; version="0.2.0"; sha256="1shw96m11l9119ngrsc6p4l5i2f5vfd0snj75jjwpjl8gx4m58fv"; depends=[data_table downloader dplyr janitor lubridate magrittr readr rlang stringr tidyr tidyselect timetk]; broken = true; }; rfinance = derive2 { name="rfinance"; version="0.1.0"; sha256="0xy4jw50vqbvicpwc3drzgg8ywgpdyxda7bqym52c76vsghcmq2d"; depends=[cli curl data_table dplyr glue httr janitor lubridate magrittr PerformanceAnalytics readr rvest stringr tibble TTR xml2 xts]; broken = true; }; rforensicbatwing = derive2 { name="rforensicbatwing"; version="1.3.1"; sha256="1i521h2nmlkhcxfxqir8jfjv0llwr6cz0ck5w6hzplk48044bn16"; depends=[Rcpp]; broken = true; }; rgeolocate = derive2 { name="rgeolocate"; version="1.4.2"; sha256="08dps73sdlhsyzkykw3y9ckxazznymfsx63p9rcssghb2silw9xw"; depends=[httr Rcpp]; broken = true; }; @@ -21255,8 +21555,10 @@ in with self; { rhli = derive2 { name="rhli"; version="0.0.2"; sha256="1mb6bizqkg7zd8nc5a81fw7d0y0vcv6zh6y28k9vikqmc5l1n21q"; depends=[]; broken = true; }; ri = derive2 { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; broken = true; }; rijkspalette = derive2 { name="rijkspalette"; version="1.0.2"; sha256="00726q8s36si08ghd9sgi7ikadcj11xqwhgv8f3cml6lvwz7ppzz"; depends=[crayon imager jsonlite]; broken = true; }; + riot = derive2 { name="riot"; version="1.1.0"; sha256="1a5w6m443rc16fbzkmrrsisac92ch2x2psvywl5i60hlr0r88d60"; depends=[cli dplyr fs purrr Rcpp readr rlang tibble]; broken = true; }; rivervis = derive2 { name="rivervis"; version="0.46.0"; sha256="19jsl5g46jcbc0kg47bsif1wrw9z9brgvwdcxqjc89shnx3hzzfv"; depends=[]; broken = true; }; rjpdmp = derive2 { name="rjpdmp"; version="2.0.0"; sha256="0r0r58zrwab4zxhgbfhh4qk6vbbza00m8h73mz70f5kqp786i9wy"; depends=[data_table Rcpp RcppArmadillo]; broken = true; }; + rkafka = derive2 { name="rkafka"; version="1.4"; sha256="00m9zj2fnd32dhm7gn3fclpmp9r2y06sd8yckdbhlvd784b2d4c9"; depends=[rJava rkafkajars RUnit]; broken = true; }; rknn = derive2 { name="rknn"; version="1.2-1"; sha256="1x9r01314q0wgqwqzd7d13ycjzb4jzghzd3whgjvm2rsmnabai95"; depends=[gmp]; broken = true; }; rld = derive2 { name="rld"; version="1.0"; sha256="1glv4q25z14hcwifwg623h77p4awpsn3nk843pnph4sb3p5qbmn3"; depends=[emdbook MASS survival]; broken = true; }; rmaf = derive2 { name="rmaf"; version="3.0.1"; sha256="0w247mamwgibr5576p5c2lzaiz2lv2c25n7gw9q99s7rc4bps7j7"; depends=[]; broken = true; }; @@ -21265,7 +21567,6 @@ in with self; { robFitConGraph = derive2 { name="robFitConGraph"; version="0.4.1"; sha256="0w5x4ndv5r8v7ji3dhmch0di4krphxrclyidfg5b3qbmn1hlhlih"; depends=[Rcpp RcppArmadillo]; broken = true; }; robets = derive2 { name="robets"; version="1.4"; sha256="0lvzfpv6569pjysblhadd05sglx0qvyr9wipb9cpiya4a1992n61"; depends=[forecast Rcpp]; broken = true; }; robustarima = derive2 { name="robustarima"; version="0.2.6"; sha256="137x9w3fq523bw2wix7bwc255mq7kvqa047chcnb2prihn9d6as7"; depends=[splusTimeDate splusTimeSeries]; broken = true; }; - robustfa = derive2 { name="robustfa"; version="1.0-5"; sha256="04nk5ipml54snsmiqf5sbhx490i46gnhs7yibf4wscrsj1bh2mqy"; depends=[rrcov]; broken = true; }; robustgam = derive2 { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[mgcv Rcpp RcppArmadillo robustbase]; broken = true; }; rorutadis = derive2 { name="rorutadis"; version="0.4.2"; sha256="13a7xj4qw1nd8xgrqhrki3php960lgy9gy38sg4kpvs4j2rwijzc"; depends=[ggplot2 gridExtra hitandrun Rglpk]; broken = true; }; royston = derive2 { name="royston"; version="1.2"; sha256="1rywc89qzx0hldbq10201bjdhz60pq2gmgd9b9j52mza3w4canjz"; depends=[moments nortest]; broken = true; }; @@ -21281,13 +21582,16 @@ in with self; { rredis = derive2 { name="rredis"; version="1.7.0"; sha256="0wzamwpmx20did8xj8x9dllri2ps83viyqjic18ari7i4h1bpixv"; depends=[]; broken = true; }; rromeo = derive2 { name="rromeo"; version="0.1.1"; sha256="1jjk5b41qg22a0zpjha2p2mfcb5q00gicqlxhkahjbj49q0c3mn9"; depends=[httr xml2]; broken = true; }; rsat = derive2 { name="rsat"; version="0.1.18"; sha256="1idm50m94qx4fgri05wwjb49w7fdzl911g1fa138y5rm6wkawsc5"; depends=[calendR curl fields httr leafem leaflet raster Rdpack rjson rvest sf sp stars terra tmap XML xml2 zip]; broken = true; }; - rsatscan = derive2 { name="rsatscan"; version="0.3.9200"; sha256="00vgby24jknq8nl7rnqcwg7gawcxhwq8b7m98vjx2hkqx39n4g21"; depends=[foreign]; broken = true; }; + rscimark = derive2 { name="rscimark"; version="1.0"; sha256="1jsjz4d5bnxb90qqzz42m4nyvm8d8w8bs0m1r5g2n78zmckqb8vy"; depends=[checkmate]; broken = true; }; rstoat = derive2 { name="rstoat"; version="1.0.2"; sha256="0npwv33a7axwhnfyz39nh0x5kk4q3chscings3msx532lzvif0cl"; depends=[curl httr jsonlite keyring]; broken = true; }; rsurfer = derive2 { name="rsurfer"; version="0.2"; sha256="14zd8fhak12yha6miwb84085722v5ipk8lagijhc6af291kp70i9"; depends=[gdata stringr]; broken = true; }; rtext = derive2 { name="rtext"; version="0.1.22"; sha256="0wsy0iqzbfin92pw0bqj4bxm2p4f2y4frr137l6c3yvd0jrax3q4"; depends=[digest hellno magrittr R6 Rcpp RSQLite stringb]; broken = true; }; rtsVis = derive2 { name="rtsVis"; version="0.0.3"; sha256="0j48p4cdkd3dwc5bxv8kmmqj38yaq4rz0wp47kx21msbajcw5m3m"; depends=[assertthat dplyr forcats ggplot2 magrittr moveVis pbapply raster RStoolbox sf sp tidyr]; broken = true; }; rvTDT = derive2 { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; broken = true; }; + rwebstat = derive2 { name="rwebstat"; version="1.1.0"; sha256="106dkhlr33ii17q45c1hrmbslwsj1qlmx325skch2q71mv7ii0lj"; depends=[dplyr getPass htmltools httr jsonlite readr stringr]; broken = true; }; rwt = derive2 { name="rwt"; version="1.0.2"; sha256="17ydpjnhg0glgpvbcwnrmyk49qqvflss1njk044j4f0zk7h0i6wi"; depends=[matlab]; broken = true; }; + ryouready = derive2 { name="ryouready"; version="0.4"; sha256="1d9z3paxcrkwsgn5g83x57jwz2iqarks30x0bwg48i5ispw6xbr3"; depends=[car ggplot2 stringr]; broken = true; }; + s2dv = derive2 { name="s2dv"; version="1.4.0"; sha256="1xx7rjrc3fjjzc4mmpfbmddlmrjdlizsb4dvqxl314mjp84bls79"; depends=[abind bigmemory ClimProjDiags easyNCDF easyVerification mapproj maps multiApply NbClust ncdf4 plyr SpecsVerification]; broken = true; }; sBF = derive2 { name="sBF"; version="1.1.1"; sha256="0dankakl4rwl9apl46hk57ps4mvn2l1crw4gdqds26fc8w6f6rab"; depends=[]; broken = true; }; sabarsi = derive2 { name="sabarsi"; version="0.1.0"; sha256="14c94zby3jjm6jr28nrg3qp6r6iw68wsb5l5bpd6jjz9pkljrk9i"; depends=[]; broken = true; }; saccades = derive2 { name="saccades"; version="0.1-1"; sha256="138a6g3hjmcyvflpxx1lhgxnb8svrynplrjnvzij7c4bzkp8zip6"; depends=[zoom]; broken = true; }; @@ -21296,6 +21600,7 @@ in with self; { sail = derive2 { name="sail"; version="0.1.0"; sha256="1wrh2dam5lblascqd8gl76jks72ys1amz84c6p08y8ykdmn2saq1"; depends=[gglasso glmnet]; broken = true; }; salbm = derive2 { name="salbm"; version="1.0"; sha256="06nizpphyn5q292b2kbsjax0ljw3340n655qwiyp8lvi2zcnl6jy"; depends=[randomForestSRC]; broken = true; }; salem = derive2 { name="salem"; version="0.2.0"; sha256="1pk27d57bmds0jvnvwai2scjy798lb7w6lb84yxl4ccgyn1ldh45"; depends=[]; broken = true; }; + samon = derive2 { name="samon"; version="4.0.1"; sha256="1zhnv7kdpd2zhp6il5x56v4yh5703n1nsnkrysygns4i7xhvcf6z"; depends=[]; broken = true; }; sampSurf = derive2 { name="sampSurf"; version="0.7-6"; sha256="1f2ndfrxz0v0di9sb17rxs3iik2qw2nj1dn7apl55b2d07nsmpk3"; depends=[boot lattice latticeExtra raster rasterVis sp]; broken = true; }; sapa = derive2 { name="sapa"; version="2.0-3"; sha256="0kj681rd4c2lvqr926lb6f4qwp281x5274dg6vbk8pf5y7s0qlpc"; depends=[ifultools splus2R]; broken = true; }; saves = derive2 { name="saves"; version="0.5"; sha256="1b4mfi2851bwcp0frx079h5yl6y1bhc2s8ziigmr8kwy1y1cxw10"; depends=[]; broken = true; }; @@ -21304,6 +21609,7 @@ in with self; { scImmuneGraph = derive2 { name="scImmuneGraph"; version="1.1.3"; sha256="0mvajasskcl4v0bjwzvkqjdicxb0329nxk93ich7qr37wfcp2n1n"; depends=[BiocStyle cowplot dplyr easypackages forcats ggplot2 gtools plyr purrr RColorBrewer readr scales stringr tibble tidyr tidyverse]; broken = true; }; scPOP = derive2 { name="scPOP"; version="0.1.0"; sha256="0bi9dmqj9cd8f09qmfl3d65922xn3j3jipxi6615jbk6bz67kkh9"; depends=[cluster Matrix RANN Rcpp RcppArmadillo]; broken = true; }; scTEP = derive2 { name="scTEP"; version="0.1.0"; sha256="1qdmsdn56sl5na0smhis9p3jwdwfs88p1x409fbpskxwpzz5cd52"; depends=[BiocGenerics doParallel dplyr foreach ggsci igraph Matrix psych rlang scDHA SingleCellExperiment SummarizedExperiment tibble]; broken = true; }; + scatteR = derive2 { name="scatteR"; version="0.0.1"; sha256="0w6sf8zkp0jjgrx2nbp43crx3w3dbrld3pk6hzjrqhf2l9wrqygw"; depends=[GenSA rJava scagnostics]; broken = true; }; scenario = derive2 { name="scenario"; version="1.0"; sha256="0v1b00kiny21yx4qkk2x51cy1zqibdnd68z76qia7h5py28yhxsi"; depends=[]; broken = true; }; scpm = derive2 { name="scpm"; version="2.0.0"; sha256="1ib46m3i50annp90n2ih4qdxabxik4ngg9j0a5hgspsvk1i4hrvp"; depends=[interp lattice MASS Matrix mvtnorm RandomFields rgl]; broken = true; }; scrapeR = derive2 { name="scrapeR"; version="0.1.6"; sha256="1rqgqpn9rc43rh356z9gb51pjhdczr9a9mgv0i078nniq156rmlb"; depends=[RCurl XML]; broken = true; }; @@ -21311,6 +21617,8 @@ in with self; { sdat = derive2 { name="sdat"; version="1.1"; sha256="1mxijw2yfblqjvqqb2xrzhfn9c872i1q9ggw24xicvr2fk4lvjw6"; depends=[]; broken = true; }; sdcTarget = derive2 { name="sdcTarget"; version="0.9-11"; sha256="18cf276mh1sv16xn0dn8par4zg8k7y8710byxiih6db4i616fjpi"; depends=[doParallel foreach magic tuple]; broken = true; }; sdtoolkit = derive2 { name="sdtoolkit"; version="2.33-1"; sha256="0pirgzcn8b87hjb35bmg082qp14idc5pfvm6dikpgkswag23hwh8"; depends=[]; broken = true; }; + seAMLess = derive2 { name="seAMLess"; version="0.1.0"; sha256="18rpka0qq6hh7v241bv5k8ln03qk90lpf3ak2plq861lnf3p0wxb"; depends=[Biobase ggplot2 ggtern randomForest]; broken = true; }; + secsse = derive2 { name="secsse"; version="2.1.7"; sha256="0cad1flym8bhra11chc16ylfa3i0nhi9jyy6r4nacwh6qpbbavjg"; depends=[ape apTreeshape DDD deSolve doParallel foreach geiger phylobase]; broken = true; }; seedwater = derive2 { name="seedwater"; version="2.0"; sha256="1q6q612245hqqx89jzlp77f73vj2baxi0bghd9l8kpjz4ydh6rv8"; depends=[rpanel]; broken = true; }; selfea = derive2 { name="selfea"; version="1.0.1"; sha256="0zyxbd5vg8nhigill3ndcvavzbb9sbh5bz6yrdsvzy8i5gzpspvx"; depends=[ggplot2 MASS plyr pwr]; broken = true; }; selfmade = derive2 { name="selfmade"; version="0.1"; sha256="0d3v202dqr3c2564g6w7k27mhy1nxx7ngpiai7yxq2s88wa7cydi"; depends=[lme4 Matrix mgcv]; broken = true; }; @@ -21336,14 +21644,13 @@ in with self; { siar = derive2 { name="siar"; version="4.2"; sha256="1c4z72jr81dzkp9xqyrrkwjsalvvksl67pnbaadkc52v84fhzx3r"; depends=[bayesm coda hdrcde MASS mnormt spatstat]; broken = true; }; siconfir = derive2 { name="siconfir"; version="2.0.3"; sha256="1s9zxswbyi7g9bim6szgf7rrsci3ias6rvd2r7rsj13d0bangn8x"; depends=[dplyr httr magrittr purrr rlang stringr tibble tidyr]; broken = true; }; sideChannelAttack = derive2 { name="sideChannelAttack"; version="1.0-6"; sha256="1xcsy1h8gc8a4f9nzs7zv8x6v55g1pg8vy1kg64iqxm0gnz2f20l"; depends=[ade4 corpcor infotheo MASS mmap]; broken = true; }; - sigQC = derive2 { name="sigQC"; version="0.1.22"; sha256="17b16mjadmsbqbai90bvryydkfy9k5ww9i65a5ahy3bfjch851f2"; depends=[biclust circlize class cluster ComplexHeatmap fmsb gplots gridGraphics GSVA KernSmooth lattice MASS mclust moments nnet RankProd]; broken = true; }; sigmaNet = derive2 { name="sigmaNet"; version="1.1.0"; sha256="1i0xikwad9kiyrqxi1klkc4h4hyqfkxr388sw4mrx9pswfpbv3xr"; depends=[htmlwidgets igraph jsonlite RColorBrewer]; broken = true; }; signmedian_test = derive2 { name="signmedian.test"; version="1.5.1"; sha256="05n7a4h2bibv2r64cqschzhjnm204m2lm1yrwxvx17cwdp847hkm"; depends=[]; broken = true; }; simLife = derive2 { name="simLife"; version="0.5.2"; sha256="1dhrjszfgxr0j4dkc2bwykyj515ji5rkb572nmnyjgkyi652j01v"; depends=[splancs]; broken = true; }; simba = derive2 { name="simba"; version="0.3-5"; sha256="14kqxqavacckl5s1518iiwzrmlgbxz1lxy33y8c9qq7xaln41g9h"; depends=[vegan]; broken = true; }; simfinR = derive2 { name="simfinR"; version="0.2.3"; sha256="1swlgwmd5frz72i3vjv7am8s6vr6i7mv76j7hxffk3l7xmq7y53s"; depends=[crayon digest dplyr jsonlite lubridate magrittr memoise purrr]; broken = true; }; - simpr = derive2 { name="simpr"; version="0.2.4"; sha256="1qilqx4hv9lyw7zal6q8263n8impln02rgglghmd0az3max17bcz"; depends=[broom dplyr furrr generics lifecycle magrittr purrr rlang tibble tidyr tidyselect]; broken = true; }; sismonr = derive2 { name="sismonr"; version="2.1.0"; sha256="1v4vfz6zc4f70fay8r9vaxj62pcp8gqnh4aczbqpym9874330vi9"; depends=[dplyr ggplot2 ggpubr igraph jsonlite magrittr rlang scales stringr tictoc tidyr truncnorm XR XRJulia]; broken = true; }; + sjSDM = derive2 { name="sjSDM"; version="1.0.4"; sha256="00f3wkz2cnafdxnj4xfmy8q95yf8k585sa8mbxnmx2jhmbrz079c"; depends=[abind checkmate cli crayon ggplot2 ggtern mathjaxr Metrics mgcv mvtnorm reticulate rstudioapi Ternary]; broken = true; }; skda = derive2 { name="skda"; version="0.1"; sha256="0a6mksr1d0j3pd0kz4jb6yh466gvl4fkrvgvnlmvivpv6b2gqs3q"; depends=[]; broken = true; }; sknifedatar = derive2 { name="sknifedatar"; version="0.1.2"; sha256="0zi9anrxg9zkgxlzlfyry5i5zlj3fs8580mp6xckkl096dry9ih0"; depends=[cli dplyr knitr magrittr modeltime parsnip purrr rlang rsample tibble tidyr tune]; broken = true; }; slga = derive2 { name="slga"; version="1.2.0"; sha256="0n96vqczpzc51ln2nraxz0846amasfbm541sy0wf0dsng283mh13"; depends=[httr raster s2 sf xml2]; broken = true; }; @@ -21368,16 +21675,15 @@ in with self; { spacey = derive2 { name="spacey"; version="0.1.1"; sha256="1p8kx3d08q9kz1wb286m3d8ckwkhfm5n42m65m4w5gz5kpfx0xfz"; depends=[httr jsonlite magrittr png raster rayshader rgdal]; broken = true; }; spagmix = derive2 { name="spagmix"; version="0.3-5"; sha256="0rjdsg1pl8vpbcyyiqaqgc10h3i0q8xqivpawfaw43ybz15csnzl"; depends=[abind mvtnorm RandomFields sparr spatstat spatstat_core spatstat_geom spatstat_linnet spatstat_random]; broken = true; }; spanel = derive2 { name="spanel"; version="0.1"; sha256="1riyvvfij277mclgik41gyi01qv0k466wyk2wbqqhlvrlj79yzsc"; depends=[]; broken = true; }; - sparseSEM = derive2 { name="sparseSEM"; version="2.5"; sha256="0ig8apsi94kvbcq3i8nzmywbdizlss7c6r9bppcyl9lxgikc3cds"; depends=[]; broken = true; }; sparsebn = derive2 { name="sparsebn"; version="0.1.2"; sha256="1b1601n3nmxck6a27xqxpsa79p4xnz7yyzdfqiddn9zd2b4v9wc5"; depends=[ccdrAlgorithm discretecdAlgorithm sparsebnUtils]; broken = true; }; spatialnbda = derive2 { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[mvtnorm SocialNetworks]; broken = true; }; spatstat_core = derive2 { name="spatstat.core"; version="2.4-4"; sha256="0fyi8y1z919nzn47kaviln7gflhcp5qdi3gfvf7nwkdix3pkk373"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; broken = true; }; + spdplyr = derive2 { name="spdplyr"; version="0.4.0"; sha256="0lijp78wgrky103137vfk3k4s051qppd6jq6s065k9i7y1azbpc1"; depends=[dplyr rlang sp spbabel tibble]; broken = true; }; spe = derive2 { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq07anpzx0afwffyx9fv20fvys0"; depends=[]; broken = true; }; speccalt = derive2 { name="speccalt"; version="0.1.1"; sha256="0j7rbidmmx78vgwsqvqjbjjh92fnkf2sdx0q79xlpjl2dph7d6l6"; depends=[]; broken = true; }; specmine = derive2 { name="specmine"; version="3.1.6"; sha256="0ik3nsb9mrja6709fwsf97f9qbf7lmmyc2zqrm7398h3mibf64l7"; depends=[baseline caret compare e1071 ellipse genefilter GGally ggplot2 impute imputeTS MASS Metrics mrbin narray pcaPP plotly pls RColorBrewer readJDX speaq specmine_datasets]; broken = true; }; specmine_datasets = derive2 { name="specmine.datasets"; version="0.0.2"; sha256="0amqb4qy5ac1jc4g95sf4678ll3xhscyrcxq6pgh8imfyk1ifrmx"; depends=[xcms]; broken = true; }; sped = derive2 { name="sped"; version="0.2-1"; sha256="05igpk8szdcs6kjhpmd9dmjvqdg199pz3hi0rwkhdjglxivvjzjn"; depends=[pooh]; broken = true; }; - speedglm = derive2 { name="speedglm"; version="0.3-4"; sha256="1kj662nfkfhvx37jrbvxd4dyjclz5cm3xh50z7s5rbzapiyxn4hs"; depends=[MASS Matrix]; broken = true; }; spfrontier = derive2 { name="spfrontier"; version="0.2.5"; sha256="1vnvwcjbhvbmyn5rp4760amzy8k3y156q629fjymw9rw6zy45pbf"; depends=[ezsim moments mvtnorm numDeriv optimx spdep tmvtnorm]; broken = true; }; spftir = derive2 { name="spftir"; version="0.1.0"; sha256="07vw8igy698jx671cj6hmf6ll9xvaq81fb6la7j95pqbd6jl284z"; depends=[pracma]; broken = true; }; spgrass6 = derive2 { name="spgrass6"; version="0.8-9"; sha256="05xvdhisad0d7c69mvahzg6pvgvmb6dph50r34981palykic7qhn"; depends=[sp XML]; broken = true; }; @@ -21398,29 +21704,35 @@ in with self; { sqlutils = derive2 { name="sqlutils"; version="1.2"; sha256="0dq4idg8i4hv9xg8jllllizqf3s75pdfm1wgncdjj52xhxh169pf"; depends=[DBI roxygen2 stringr]; broken = true; }; sqp = derive2 { name="sqp"; version="0.5"; sha256="0l01zwcryv5bmzmd98gj0m5ip8nvr8lziq1awvfif1bzwvvd2kzx"; depends=[Matrix Rcpp RcppArmadillo RcppEigen Rdpack]; broken = true; }; squashinformr = derive2 { name="squashinformr"; version="0.2.6"; sha256="0qsgvcmw4yxsj3y2li3k33mycr2k3n8v9b09rcvs0qk036fmivgx"; depends=[dplyr Hmisc janitor lubridate naniar plyr polite rlang rvest stringr tibble tidyr]; broken = true; }; + squat = derive2 { name="squat"; version="0.1.0"; sha256="1sxdfqn18xfky3z1wxl82fb0c7glvhfm670xymgp4q3dri60a5r1"; depends=[cli dtw fdacluster funData furrr ggplot2 ggrepel MFPCA progressr purrr Rcpp RcppArmadillo RcppEigen roahd scales tibble tidyr]; broken = true; }; ssd = derive2 { name="ssd"; version="0.3"; sha256="1z61n9m6vn0ijawyz924ak0zfl9z13jsb4k4575b7c424ci2p6gy"; depends=[]; broken = true; }; ssh_utils = derive2 { name="ssh.utils"; version="1.0"; sha256="08313zzzgcyvzkrkq0w0yf748ya1a9shx5xnan5891v0lah9v0b1"; depends=[stringr]; broken = true; }; sspline = derive2 { name="sspline"; version="0.1-6"; sha256="0d6ms8szyn39c7v0397d5ar2hrl8v1l2b7m8hlj37hgp70b9s55h"; depends=[]; broken = true; }; sspm = derive2 { name="sspm"; version="0.9.1"; sha256="1j62cphwqfkn6jmabqcqcbxd65by41ghvf3cpnbj6n20wakpkh05"; depends=[checkmate cli dplyr magrittr mgcv purrr rlang sf stringr tibble tidyr units]; broken = true; }; sstModel = derive2 { name="sstModel"; version="1.0.0"; sha256="04dvj6dbxidn1df2rslppl2pw2ql09rag39jrzdbnv6z20szbbd9"; depends=[data_table MASS openxlsx readxl shiny shinydashboard]; broken = true; }; ssvd = derive2 { name="ssvd"; version="1.0"; sha256="1fdpr38qi59ijrz16jixn6ii1hvmxfjirjqfcp7dxrqz9nx8x0sk"; depends=[]; broken = true; }; - stabiliser = derive2 { name="stabiliser"; version="1.0.2"; sha256="1r74p82p9g796nzwgvldrnk0nl1bpnwgcasmrz7lqkg3zpkj3wzn"; depends=[bigstep broom caret dplyr expss ggplot2 glmnet Hmisc knitr lme4 lmerTest matrixStats ncvreg purrr recipes rsample stringr tibble tidyr]; broken = true; }; stam = derive2 { name="stam"; version="0.0-1"; sha256="1x1j45fir64kffny0nssb2hwn4rcp8gd2cjv6fw4yy0l4d0xi5iv"; depends=[np sp]; broken = true; }; stanette = derive2 { name="stanette"; version="2.21.4"; sha256="0417wbvc1gqkfnqg736cljbf0yg1csv7s98ndzzw7f18wbh69nqk"; depends=[BH brew coda ggplot2 gridExtra inline lattice loo pkgbuild Rcpp RcppEigen RcppParallel StanHeaders V8]; broken = true; }; + staplr = derive2 { name="staplr"; version="3.1.1"; sha256="0g3a13qndi4w35wq9bm0gb2b8v9svih9gbj5ymggqlcwz1dzywga"; depends=[assertthat glue rJava stringr XML]; broken = true; }; starschemar = derive2 { name="starschemar"; version="1.2.0"; sha256="0jjaic1zwdc3lvdlgs0vzkjjivjs2dskmhx4qg469ban34az0591"; depends=[dplyr generics pander purrr readr rlang snakecase tibble tidyr tidyselect]; broken = true; }; + startR = derive2 { name="startR"; version="2.2.2"; sha256="09zdka2mgkqkanamza8izhn9xwdpmj91l88538zxm9ckbk2213kw"; depends=[abind bigmemory ClimProjDiags easyNCDF future multiApply PCICt s2dv]; broken = true; }; + stat_extend = derive2 { name="stat.extend"; version="0.2.1"; sha256="1qwjqnjds733xvxhby604yqvwlj1rkr3411diwzhbgwp89rhy11r"; depends=[sets]; broken = true; }; + static = derive2 { name="static"; version="0.1.0"; sha256="1n9ijilh81w2fz4cyd4abjj7qam8q7rirmp8lni5cxsb4il0qbfa"; depends=[]; broken = true; }; + stepR = derive2 { name="stepR"; version="2.1-4"; sha256="18n368q7kc6q46ilvsvzjlrnlc93dgz01dzi4n10cn9sa2cvk496"; depends=[digest lowpassFilter R_cache Rcpp]; broken = true; }; stickr = derive2 { name="stickr"; version="0.3.1"; sha256="0krz123vz4bdcdi4p27r637pgz4rcj6kmyiqdf5x69riddvfxx8r"; depends=[base64enc fs gh stringr]; broken = true; }; stlcsb = derive2 { name="stlcsb"; version="0.1.2"; sha256="08pnj1yb4xcbhnrp2wny8lq9rvcvmsgaza07k4358csfksvmcira"; depends=[dplyr lubridate purrr readr readxl rlang rvest sf stringr tibble xml2]; broken = true; }; strm = derive2 { name="strm"; version="0.1.3"; sha256="1jwsdr2pja7gjrrdn37bv9r8xvyzl03akrgldh4qbrvx9p03w67w"; depends=[dplyr knitr magrittr purrr rgdal rlang rmarkdown spatialreg testthat tidyr]; broken = true; }; stsm = derive2 { name="stsm"; version="1.9"; sha256="18ypmkd7l7m7qkahb0nqf8f1m8g4irxlw48v2ms0dq1bsnhbzx7j"; depends=[KFKSDS]; broken = true; }; stubthat = derive2 { name="stubthat"; version="1.2.1"; sha256="130naxzvswcyadwcgldvwnxxdxbfwx5vljac7901vn3ahjp75d8z"; depends=[testthat]; broken = true; }; + stylest = derive2 { name="stylest"; version="0.2.0"; sha256="1c036zsn1gi5vhsz37p56wz1bcr3pwdp2k62j7ikmrrnkcv2w9kz"; depends=[corpus Matrix]; broken = true; }; sublime = derive2 { name="sublime"; version="1.3"; sha256="0455fppc68azxknxjvxci4kjpcj6c1jkp9adbxqrn3qnnywaj5v2"; depends=[AnalyzeFMRI downloader oro_nifti]; broken = true; }; subtype = derive2 { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; broken = true; }; + sundialr = derive2 { name="sundialr"; version="0.1.4.1"; sha256="1ln8zbihxfa7dnbhrm254l8qzdw16fhva58p5bd0p8j43grq6qrv"; depends=[Rcpp RcppArmadillo]; broken = true; }; superMDS = derive2 { name="superMDS"; version="1.0.2"; sha256="0jxbwm3izk7bc3bd01ygisn6ihnapg9k5lr6nbkr96d3blpikk04"; depends=[]; broken = true; }; support = derive2 { name="support"; version="0.1.5"; sha256="0gs6mva1lwanq4rm8l70sid28if2l0k249ydirqkz72lz12hg1br"; depends=[BH MHadaptive nloptr randtoolbox Rcpp RcppArmadillo]; broken = true; }; supportInt = derive2 { name="supportInt"; version="1.1"; sha256="14fh75sds05c06xkcfbijd8my3sa9kpnczzh96xx0gwj1193yya9"; depends=[ProfileLikelihood]; broken = true; }; supreme = derive2 { name="supreme"; version="1.1.0"; sha256="0y5kd911f7h754ppdpw94qw3r8vzz3yhyj5b99h3h96iifydlik6"; depends=[nomnoml shiny yaml]; broken = true; }; surf = derive2 { name="surf"; version="1.0.0"; sha256="0hiqs55apwq02lm0hr0r06zg734yr5w2xn9cdqjq3bk4lap4m0q1"; depends=[abind MASS Matrix numDeriv survey]; broken = true; }; - surrosurv = derive2 { name="surrosurv"; version="1.1.25"; sha256="05s1skjp1vzwai2nfw65ff4q2qhbj596lhfvzd1gdrbs39r90hxh"; depends=[copula eha lme4 MASS Matrix msm mvmeta optextras optimx parfm SurvCorr survival]; broken = true; }; survJamda = derive2 { name="survJamda"; version="1.1.4"; sha256="14ly1g548ysm8jgsyrhj12zmd6i2lca7rsgby3jbwikyqyk1mx5q"; depends=[ecodist survcomp survival survivalROC survJamda_data]; broken = true; }; survMS = derive2 { name="survMS"; version="0.0.1"; sha256="0313pwf0l6wq9l4qjj1al9ybzm79kdxwzdrw6k0af706rxfzzha0"; depends=[ggplot2]; broken = true; }; survRatio = derive2 { name="survRatio"; version="0.1"; sha256="1xrqin3q3b7r8ga4i71ci97rsm4lj5ffd0720n7s563jkpnpyb9l"; depends=[ggplot2 ggpubr gridExtra survival]; broken = true; }; @@ -21452,7 +21764,8 @@ in with self; { tangles = derive2 { name="tangles"; version="0.8.1"; sha256="06a5hn5hkvgr6pcjz3n0vi1zwmv00wypi5f62agqh8mas80v44vh"; depends=[digest raster sp]; broken = true; }; tbart = derive2 { name="tbart"; version="1.0"; sha256="0m8l9ic7na70il6r9ha0pyrjwznbgjq7gk5xwa5k9px4ysws29k5"; depends=[Rcpp sp]; broken = true; }; tcensReg = derive2 { name="tcensReg"; version="0.1.7"; sha256="07wwn65c4q2ngafxhdd9vl0y1wambfy158mf38skxm295yidd05n"; depends=[maxLik Rdpack]; broken = true; }; - tensorregress = derive2 { name="tensorregress"; version="4.0"; sha256="0pb512v3gahgv3qc31i5v2jg8wixi6ps3p920sq5dgpfrig9hg2q"; depends=[MASS pracma speedglm]; broken = true; }; + tempoR = derive2 { name="tempoR"; version="1.0.4.4"; sha256="0gn16j496833pvbjaf6wx26z9ilwssjp947mcyk6n2jb33x93rr2"; depends=[doParallel foreach pls]; broken = true; }; + tensorFun = derive2 { name="tensorFun"; version="0.1.1"; sha256="0ij3dshnj448scws6d2pdw2ik34hbhq9mksmllgy0g8l257a3x8d"; depends=[ClimProjDiags MASS psychTools]; broken = true; }; textreadr = derive2 { name="textreadr"; version="1.2.0"; sha256="163ziizi3r00gamdl7wiwy5qsmb4sxlkw64qfij0b4jcr7p1ncqg"; depends=[antiword curl data_table pdftools readxl rvest striprtf textshape xml2]; broken = true; }; thectar = derive2 { name="thectar"; version="1.0.0"; sha256="1qh0qzg0ybb38kzm56xxlvhm201pdjm16aky5f1fdflcsszgy8mx"; depends=[proxy smacof]; broken = true; }; themetagenomics = derive2 { name="themetagenomics"; version="1.0.2"; sha256="14i81cd9cyzhi3j2d9ygwlairkimhx8ffvva3pg3xwwvpywb6mla"; depends=[ggplot2 lda lme4 Matrix plotly Rcpp rstan scales shiny stm]; broken = true; }; @@ -21478,6 +21791,7 @@ in with self; { toRvik = derive2 { name="toRvik"; version="1.1.1"; sha256="09b4c5j3wsiawx5pc1n6ga4qs1s0ybavh1drz6s2ikrpdvb62724"; depends=[cli crayon data_table dplyr glue httr janitor jsonlite lubridate magrittr purrr readr rlang rvest stringr tidyr withr]; broken = true; }; tobit1 = derive2 { name="tobit1"; version="0.1-3"; sha256="08rq1h3psxjzzfna6krji4ixrbd43v77qb9k00v1rysarlqyg0k1"; depends=[Formula generics margins numDeriv prediction Rdpack tibble]; broken = true; }; tosls = derive2 { name="tosls"; version="1.0"; sha256="03nqwahap504yvcksvxdhykplbzmf5wdwgpzm7svn8bymdc472v2"; depends=[Formula]; broken = true; }; + tosr = derive2 { name="tosr"; version="0.1.2"; sha256="1jv5bh1b7x242rb97i1w6x0w76cjyva4p6w5xr5qazgz7lfm6ysb"; depends=[bibliometrix CINNA dplyr igraph magrittr rebus rlang stringr tibble tidyr]; broken = true; }; touchard = derive2 { name="touchard"; version="2.0.1"; sha256="06491r4x3ycmv3ddbqwig334wj9qvm395xlaifx4hjjyyi65xb3q"; depends=[MASS nleqslv numDeriv plotrix]; broken = true; }; toxtestD = derive2 { name="toxtestD"; version="2.0"; sha256="0b7hmpfhwg626r8il12shni0kw94cqnbj49y4vfh8gn98x1s6m48"; depends=[]; broken = true; }; track = derive2 { name="track"; version="1.1.9"; sha256="1d0hab7xyayyhyyrbv8nvpka1kzry4yx10fg8aqwkca3nm7n2q3c"; depends=[]; broken = true; }; @@ -21487,10 +21801,12 @@ in with self; { translate = derive2 { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[functional lisp RCurl RJSONIO]; broken = true; }; translateR = derive2 { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; broken = true; }; translation_ko = derive2 { name="translation.ko"; version="0.0.1.5.2"; sha256="1w5xibg4znhd39f3i0vsqckp6iia43nblqxnzgj0ny6s7zmdq1wd"; depends=[]; broken = true; }; + treasuryTR = derive2 { name="treasuryTR"; version="0.1.6"; sha256="1m7pw2y9q03vn32y63la56l816b3yqkix1yd3j3nk6mwmdyqcyjq"; depends=[dplyr lubridate quantmod xts zoo]; broken = true; }; treelet = derive2 { name="treelet"; version="1.1"; sha256="0k3qhxjg7ws6jfhcvvv9jmy26v2wzi4ghnxnwpjm8nh7b90lbysd"; depends=[]; broken = true; }; treeman = derive2 { name="treeman"; version="1.1.4"; sha256="1rlq8sklvpj6an8x9wvs3501y6dpl2vhl5zfmz0yvmif04msf49v"; depends=[ape bigmemory plyr RJSONIO stringr]; broken = true; }; treeperm = derive2 { name="treeperm"; version="1.6"; sha256="0mz7p9khrsq4dbkijymfvlwr01y4fvs0x6si4x5xid16s2zsnmm4"; depends=[]; broken = true; }; treeplyr = derive2 { name="treeplyr"; version="0.1.10"; sha256="0k5hblnpbs8h2812blc6crx1j9w9r7lzkz3fraxkn4gdfpfi5100"; depends=[ape dplyr geiger lazyeval phytools Rcpp]; broken = true; }; + tricolore = derive2 { name="tricolore"; version="1.2.2"; sha256="0pxahddc3dah4n4xk4i0dkiwvh4wf03gcx8q3nfrsk07zzap1zh1"; depends=[assertthat ggplot2 ggtern shiny]; broken = true; }; triggerstrategy = derive2 { name="triggerstrategy"; version="1.1.0"; sha256="1gly2brw0glcnx8is4mrlrbxgnma57vpfid5lkpz2wdakwn7y2by"; depends=[GA gsrsb ldbounds mvtnorm nleqslv]; broken = true; }; trimTrees = derive2 { name="trimTrees"; version="1.2"; sha256="0v75xf5186dy76332x4w7vdwcz7zpqga8mxrb5all2miq2v45fi8"; depends=[mlbench randomForest]; broken = true; }; trioGxE = derive2 { name="trioGxE"; version="0.1-1"; sha256="1ra86l3i7fhb6nsy8izixyvm6z23shv7fcjmnnpil54995j15ax4"; depends=[gtools mgcv msm]; broken = true; }; @@ -21502,6 +21818,7 @@ in with self; { tsc = derive2 { name="tsc"; version="1.0-3"; sha256="1acsdkxizlkix1sskwqv2a80rshw6f14zvcsjhrmmdfd4bmwh36y"; depends=[]; broken = true; }; tsgui = derive2 { name="tsgui"; version="0.2.1"; sha256="0crm2ripxpjaz1cqz9lkj3y9xj4ia0hlq4lvz1rff0wq6d5w79dn"; depends=[RandomFieldsUtils tcltk2 tkrplot]; broken = true; }; ttwa = derive2 { name="ttwa"; version="0.8.5.1"; sha256="1lhypcwssq0dspizvln3w4dg16ad6mz8cj4w34c5vsrayqid7fyn"; depends=[data_table]; broken = true; }; + tukeyGH = derive2 { name="tukeyGH"; version="1.0.0"; sha256="1nlhv8lyjaqq95l7j85bdqdrsphagwf69iq8g3ryyyckchirljjg"; depends=[magrittr minqa Rdpack rootSolve]; broken = true; }; tumblR = derive2 { name="tumblR"; version="1.2"; sha256="1qili2c9wb6hpjjf7m0gyvdymzls5w4pghjkyi3sbp0q7ayhbh12"; depends=[httr RCurl RJSONIO stringr]; broken = true; }; turfR = derive2 { name="turfR"; version="0.8-7"; sha256="007jmkppfv1x4zzvvd65fhg5k15ybjhsya2zfjgwm77wm34y81ca"; depends=[dplyr]; broken = true; }; tutorial = derive2 { name="tutorial"; version="0.4.3"; sha256="0sxdlpw0w4azlaxdlk36ycrric6pbj2zi4nyv26pgsp0cr1hrx6r"; depends=[base64enc knitr markdown rjson]; broken = true; }; @@ -21524,6 +21841,7 @@ in with self; { vbdm = derive2 { name="vbdm"; version="0.0.4"; sha256="1rbff0whhbfcf6q5wpr3ws1n4n2kcr79yifcni12vxg69a3v6dd3"; depends=[]; broken = true; }; vbsr = derive2 { name="vbsr"; version="0.0.5"; sha256="1avskbxxyinjjdga4rnghcfvd4sypv4m39ysfaij5avvmi89bx3b"; depends=[]; broken = true; }; vcrpart = derive2 { name="vcrpart"; version="1.0-4"; sha256="1mg87jpdih33lalxhfcxbri439d4cgi7hqdrnvijr7qabjmnc7p4"; depends=[formula_tools nlme numDeriv partykit rpart sandwich strucchange ucminf zoo]; broken = true; }; + vdra = derive2 { name="vdra"; version="1.0.0"; sha256="1ldl3wm55a5ywc5398lzky6l6x5a9djxwrqnrd570fg4iq6d30l1"; depends=[]; broken = true; }; vertexenum = derive2 { name="vertexenum"; version="1.0.2"; sha256="16ywz3z1kzhb3knhhi2i5igm3djdaaxyyrw69wkc5saa7ayhdb4y"; depends=[numbers]; broken = true; }; vetools = derive2 { name="vetools"; version="1.3-28"; sha256="1470xgqdq9n5kj86gdfds15k3vqidk3h99zi3g76hhyfl8gyl1c0"; depends=[lubridate maptools plyr scales sp stringr tis xts]; broken = true; }; viewshed3d = derive2 { name="viewshed3d"; version="4.0.0"; sha256="039xx39w3k3hckf0qci7j1364s47vja5s18siqjh6c5yy1w8q737"; depends=[data_table hyper_fit lidR nabor pkgcond plotrix pracma raster rgl sp viridis]; broken = true; }; @@ -21538,6 +21856,7 @@ in with self; { wSVM = derive2 { name="wSVM"; version="0.1-7"; sha256="0c7rblzgagwfb8mmddkc0nd0f9rv6kapw8znpwapv3fv0j2qzq7h"; depends=[MASS quadprog]; broken = true; }; waccR = derive2 { name="waccR"; version="0.1.0"; sha256="092p1bibyqx1gcrch68l9ilzilg5aqf46b6iagm562292cfi074l"; depends=[dplyr lubridate magrittr rvest tibble xml2]; broken = true; }; wahc = derive2 { name="wahc"; version="1.0"; sha256="1324xhajgmxq6dxzpnkcvxdpm2m3g47drhyb2b3h227cn3aakxyg"; depends=[]; broken = true; }; + waspasR = derive2 { name="waspasR"; version="0.1.1"; sha256="1mxlplz3n119lxf73i44zcw1pn3prmgqyblysphd3xnrdmbhyq1a"; depends=[]; broken = true; }; water = derive2 { name="water"; version="0.8"; sha256="0qglf922dlgi41jzz3sivq7ckmzl8axqjfg4klcgnddycmm3ha5j"; depends=[raster rgdal sp]; broken = true; }; wcep = derive2 { name="wcep"; version="1.0.0"; sha256="1hpakygvh3b64i5hwkriwq5g8vnvghvgdj0jn9m59j43050k32cy"; depends=[coin dplyr progress tidyr]; broken = true; }; weathercan = derive2 { name="weathercan"; version="0.6.2"; sha256="1mr926rymacx1f8k79pwhcyl5xcymq77l4dxaa2ddlrx5cmyh5cv"; depends=[dplyr httr lubridate memoise purrr rappdirs readr rlang rvest stringi stringr tidyr tidyselect xml2]; broken = true; }; @@ -21548,10 +21867,13 @@ in with self; { weibull4 = derive2 { name="weibull4"; version="1.0.0"; sha256="1a95yw67iy7dqib33v31apxmskl019zng66jrlflbqx6p2vjdh30"; depends=[]; broken = true; }; wellknown = derive2 { name="wellknown"; version="0.7.4"; sha256="0d0sxmp58dscfxny1492lgw8x0ypwakmrkkl7rcfs2fz7v26ygj8"; depends=[BH jsonlite Rcpp wk]; broken = true; }; winRatioAnalysis = derive2 { name="winRatioAnalysis"; version="0.1.0"; sha256="1msvc06bfzw9clinxbvr5fdw38dff0c0xii46182nwnk5kj0libr"; depends=[data_table JM Matrix MLEcens mvtnorm nlme plyr pssm survival]; broken = true; }; + wingui = derive2 { name="wingui"; version="0.2"; sha256="0yf6k33qpcjzyb7ckwsxpdw3pcsja2wsf08vaca7qw27yxrbmaa3"; depends=[Rcpp]; broken = true; }; + wiseR = derive2 { name="wiseR"; version="1.0.1"; sha256="187ylwhk06957x9zm5r0m6w9wg08im83myz3s4gr927ig8yv3b5f"; depends=[arules bnlearn DescTools dplyr DT graph HydeNet igraph linkcomm missRanger psych RBGL Rgraphviz rhandsontable rintrojs shiny shinyalert shinyBS shinycssloaders shinydashboard shinyWidgets visNetwork]; broken = true; }; wmlf = derive2 { name="wmlf"; version="0.1.2"; sha256="0zxw84l5v12r15hpyd1kbajjz3cbkn5g884kmj72y7yi0yi1b6d6"; depends=[waveslim]; broken = true; }; wordbankr = derive2 { name="wordbankr"; version="1.0.0"; sha256="1jcls9pw0qwf14d9f1kwyd77yrwmcx7k4hzs1h2dli29mvi6hcxg"; depends=[assertthat DBI dbplyr dplyr glue jsonlite lifecycle purrr quantregGrowth rlang RMySQL robustbase stringr tidyr]; broken = true; }; wordgraph = derive2 { name="wordgraph"; version="0.1.0"; sha256="06q42sjdj7i680zqx66hsvrpmkrlcyxnvsk1lygnqhlv97ycl3vv"; depends=[dplyr ggplot2 ggraph plyr purrr tibble tidygraph]; broken = true; }; wordmatch = derive2 { name="wordmatch"; version="1.0"; sha256="0zscp361qf79y1zsliga18hc7wj36cnydshrqb9pv67b65njrznz"; depends=[plyr reshape2]; broken = true; }; + worms = derive2 { name="worms"; version="0.2.2"; sha256="183chjdi5qvsmdznvc9igcxaz769a37rwh5nzgvf5zf012a85wir"; depends=[httr plyr]; broken = true; }; wvtool = derive2 { name="wvtool"; version="1.0"; sha256="0x9awj6g5lzqp2lhwgh9ib7jmfdzyhwazrjvw1vwacqqfhbz8qxv"; depends=[]; broken = true; }; x12GUI = derive2 { name="x12GUI"; version="0.13.0"; sha256="1mga7g9gwb3nv2qs27lz4n9rp6j3svads28hql88sxaif6is3nk1"; depends=[cairoDevice Hmisc lattice RGtk2 stringr x12]; broken = true; }; xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; broken = true; }; @@ -21563,10 +21885,12 @@ in with self; { xtune = derive2 { name="xtune"; version="0.1.0"; sha256="0bpf1cx7v7q0a1jip04xd0bjg9ilagrf7wg7a9y0m6wgw7s2b9jn"; depends=[glmnet selectiveInference]; broken = true; }; xyz = derive2 { name="xyz"; version="0.2"; sha256="13w4sb4pvgciwr8wsz785dafj2k2kpx7znz46r5d32wx88vkycp4"; depends=[Rcpp]; broken = true; }; yakmoR = derive2 { name="yakmoR"; version="0.1.1"; sha256="09aklz79s0911p2wnpd7gc6vrbr9lmiskhkahsc63pdigggmq9f7"; depends=[BBmisc checkmate Rcpp]; broken = true; }; + yap = derive2 { name="yap"; version="0.1.1"; sha256="0m126vpfvlmwkpy14i9wbzr51hb8r6s3wcdm3vp9izfccpnxfxl2"; depends=[lhs randtoolbox]; broken = true; }; yaps = derive2 { name="yaps"; version="1.2.5"; sha256="0309vc67v5kfbdcah5gnvdqwdxir4k1ik47dw6msw2hvg6lpqvqf"; depends=[circular cowplot data_table ggplot2 ggrepel nloptr plyr Rcpp RcppEigen reshape2 splusTimeSeries tictoc TMB viridis zoo]; broken = true; }; ycinterextra = derive2 { name="ycinterextra"; version="0.1"; sha256="0hr37izbbmxqkjy6a7q8vcn0vs8an1ck9y8xfjpl5z0rygi8xc1v"; depends=[mcGlobaloptim]; broken = true; }; ykmeans = derive2 { name="ykmeans"; version="1.0"; sha256="0xfji2fmslvc059kk3rwkv575ffzl787sa9d4vw5hxnsmkn8lq50"; depends=[foreach plyr]; broken = true; }; yonder = derive2 { name="yonder"; version="0.2.0"; sha256="1ilzn17w6skd0dhwxyrgnfzyazafp8hsi8q6pfxz6k16cd668mc0"; depends=[htmltools magrittr shiny]; broken = true; }; + youtubecaption = derive2 { name="youtubecaption"; version="1.0.0"; sha256="15cafl7b03xrql2y2ayy6ajf6v764wym3xqs4pbzlf6ncy8qwl5r"; depends=[dplyr magrittr purrr reticulate stringr tibble writexl]; broken = true; }; yowie = derive2 { name="yowie"; version="0.1.0"; sha256="1sm3dg4sirvlb17ciwldvnc1zzfgwxm38x1k2n99nwa6sygn1nrw"; depends=[tsibble]; broken = true; }; yummlyr = derive2 { name="yummlyr"; version="0.1.1"; sha256="0xrk6g58laksz92d8mxck923sk4j92g55szrkxk123wjp5kg9vx6"; depends=[httr jsonlite]; broken = true; }; zGPS_AO = derive2 { name="zGPS.AO"; version="0.1.0"; sha256="18dqssnj4gch1yg0qvrj4j2ry95sy6a9z8yz2zi8nzhhsj8dz1qq"; depends=[doParallel doRNG dplyr foreach ggplot2 hrbrthemes MASS plotly pscl questionr viridis]; broken = true; }; diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index b5f18f6237b71..3ba79111d7cf0 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -357,6 +357,7 @@ let kza = [ pkgs.fftw.dev ]; lpsymphony = with pkgs; [ pkg-config gfortran gettext ]; lwgeom = with pkgs; [ proj geos gdal ]; + rvg = [ pkgs.libpng.dev ]; magick = [ pkgs.imagemagick.dev ]; ModelMetrics = lib.optional stdenv.isDarwin pkgs.llvmPackages.openmp; mvabund = [ pkgs.gsl ]; diff --git a/pkgs/development/r-modules/patches/rhdf5filters.patch b/pkgs/development/r-modules/patches/rhdf5filters.patch index 39f09f54ceef8..93a99704302a6 100644 --- a/pkgs/development/r-modules/patches/rhdf5filters.patch +++ b/pkgs/development/r-modules/patches/rhdf5filters.patch @@ -1,19 +1,31 @@ diff --git a/src/Makevars.in b/src/Makevars.in -index 4441634..665a2dd 100644 +index dead2df..b86e3de 100644 --- a/src/Makevars.in +++ b/src/Makevars.in -@@ -20,10 +20,9 @@ export PKG_LDFLAGS=@LDFLAGS@ +@@ -22,20 +22,19 @@ export PKG_LDFLAGS=@LDFLAGS@ all: copying $(SHLIB) #copy hdf5 library headers to package include --copying: blosc/libH5Zblosc.so bzip2/libH5Zbz2.so lzf/libH5Zlzf.so -+copying: bzip2/libH5Zbz2.so lzf/libH5Zlzf.so +-copying: libH5Zblosc.so libH5Zbz2.so libH5Zlzf.so ++copying: libH5Zbz2.so libH5Zlzf.so libH5Zzstd.so mkdir -p "${USER_LIB_DIR}" cp ${BZIP2_LIB} "${USER_LIB_DIR}" - cp ${BLOSC_LIB} "${USER_LIB_DIR}" cp ${LZF_LIB} "${USER_LIB_DIR}" + # cp ${VBZ_LIB} "${USER_LIB_DIR}" + cp ${ZSTD_LIB} "${USER_LIB_DIR}" +- ++ + #libH5Zvbz.so: libH5Zzstd.so + # $(MAKE) -C vbz + + libH5Zblosc.so: libH5Zzstd.so + $(MAKE) -C blosc +- ++ + libH5Zzstd.so: + $(MAKE) -C zstd - blosc/libH5Zblosc.so: diff --git a/src/bzip2/Makefile b/src/bzip2/Makefile index 449bbe7..154354e 100644 --- a/src/bzip2/Makefile diff --git a/pkgs/development/ruby-modules/bundler-update-script/default.nix b/pkgs/development/ruby-modules/bundler-update-script/default.nix index fce983a0e8efa..5d5ebfabce0e3 100644 --- a/pkgs/development/ruby-modules/bundler-update-script/default.nix +++ b/pkgs/development/ruby-modules/bundler-update-script/default.nix @@ -1,11 +1,11 @@ -{ runtimeShell, lib, writeScript, bundix, bundler, bundler-audit, coreutils, git, nix }: +{ runtimeShell, lib, writeScript, bundix, bundler, coreutils, git, nix }: attrPath: let updateScript = writeScript "bundler-update-script" '' #!${runtimeShell} - PATH=${lib.makeBinPath [ bundler bundler-audit bundix coreutils git nix ]} + PATH=${lib.makeBinPath [ bundler bundix coreutils git nix ]} set -o errexit set -o nounset set -o pipefail @@ -19,7 +19,6 @@ let cd "$gemdir" bundler lock --update - bundler-audit check --update bundix ''; in [ updateScript attrPath ] diff --git a/pkgs/development/ruby-modules/gem-config/default.nix b/pkgs/development/ruby-modules/gem-config/default.nix index 4e9f663d9ac57..22794da251675 100644 --- a/pkgs/development/ruby-modules/gem-config/default.nix +++ b/pkgs/development/ruby-modules/gem-config/default.nix @@ -283,6 +283,15 @@ in meta.mainProgram = "rbprettier"; }; + prometheus-client-mmap = attrs: { + dontBuild = false; + postPatch = let + getconf = if stdenv.hostPlatform.isGnu then stdenv.cc.libc else getconf; + in '' + substituteInPlace lib/prometheus/client/page_size.rb --replace "getconf" "${lib.getBin getconf}/bin/getconf" + ''; + }; + glib2 = attrs: { nativeBuildInputs = [ pkg-config ] ++ lib.optionals stdenv.isDarwin [ DarwinTools ]; diff --git a/pkgs/development/tools/air/default.nix b/pkgs/development/tools/air/default.nix index 92dcf2cf3af99..9d374fc022883 100644 --- a/pkgs/development/tools/air/default.nix +++ b/pkgs/development/tools/air/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "air"; - version = "1.43.0"; + version = "1.44.0"; src = fetchFromGitHub { owner = "cosmtrek"; repo = "air"; rev = "v${version}"; - hash = "sha256-gFMT/casY2ASbh0UzUjtgVGCiVFcFHBlvWlRptqRw3Y="; + hash = "sha256-BLha2PDn7iF0B5OPVkJT6en1Znt/6xiHxuCj14ha9tc="; }; vendorHash = "sha256-n2Ei+jckSYAydAdJnMaPc7FGUcwSbC49hk6nlDyDMPE="; diff --git a/pkgs/development/tools/altair-graphql-client/default.nix b/pkgs/development/tools/altair-graphql-client/default.nix index af29e7e590b3a..ff611d5a385f5 100644 --- a/pkgs/development/tools/altair-graphql-client/default.nix +++ b/pkgs/development/tools/altair-graphql-client/default.nix @@ -2,11 +2,11 @@ let pname = "altair"; - version = "5.0.23"; + version = "5.0.25"; src = fetchurl { url = "https://github.com/imolorhe/altair/releases/download/v${version}/altair_${version}_x86_64_linux.AppImage"; - sha256 = "sha256-sjM5KztkFqsZT153b181OLrus5YS09Dp/w4LD6Q6Ros="; + sha256 = "sha256-uDIjNlT93fKV0DtpJua59hUcHF90fDdvNUt1/PA1gIY="; }; appimageContents = appimageTools.extract { inherit pname version src; }; diff --git a/pkgs/development/tools/analysis/checkov/default.nix b/pkgs/development/tools/analysis/checkov/default.nix index 7e8db6b8cb539..05e38097b17ad 100644 --- a/pkgs/development/tools/analysis/checkov/default.nix +++ b/pkgs/development/tools/analysis/checkov/default.nix @@ -22,14 +22,14 @@ with py.pkgs; buildPythonApplication rec { pname = "checkov"; - version = "2.3.261"; + version = "2.3.281"; format = "setuptools"; src = fetchFromGitHub { owner = "bridgecrewio"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-GRP9crehMlU+T2Iss0fUh00M6nD7dJYDtagDvBakipo="; + hash = "sha256-ESekvthtLMSwAlwcFHEZ+6uVDr+BHgmrnTMwS/BauQw="; }; patches = [ @@ -37,11 +37,12 @@ buildPythonApplication rec { ]; pythonRelaxDeps = [ - "dpath" "bc-detect-secrets" "bc-python-hcl2" - "pycep-parser" + "dpath" + "license-expression" "networkx" + "pycep-parser" ]; nativeBuildInputs = [ diff --git a/pkgs/development/tools/analysis/checkstyle/default.nix b/pkgs/development/tools/analysis/checkstyle/default.nix index 87d2c776bdd94..d07b73f48fc22 100644 --- a/pkgs/development/tools/analysis/checkstyle/default.nix +++ b/pkgs/development/tools/analysis/checkstyle/default.nix @@ -1,12 +1,12 @@ { lib, stdenv, fetchurl, makeWrapper, jre }: stdenv.mkDerivation rec { - version = "10.11.0"; + version = "10.12.0"; pname = "checkstyle"; src = fetchurl { url = "https://github.com/checkstyle/checkstyle/releases/download/checkstyle-${version}/checkstyle-${version}-all.jar"; - sha256 = "sha256-Fw8sG3iAnFXbdzGgbDJEoGGGdd+dSxCrS4KTLunEyjA="; + sha256 = "sha256-pA1K58kBZ3lZVgzg0NFYt+vA1JHOW+yW41t0ARlqvJE="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/tools/analysis/codeql/default.nix b/pkgs/development/tools/analysis/codeql/default.nix index 4bfc023725e82..9cd79c13288c7 100644 --- a/pkgs/development/tools/analysis/codeql/default.nix +++ b/pkgs/development/tools/analysis/codeql/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "codeql"; - version = "2.13.1"; + version = "2.13.3"; dontConfigure = true; dontBuild = true; @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { src = fetchzip { url = "https://github.com/github/codeql-cli-binaries/releases/download/v${version}/codeql.zip"; - sha256 = "sha256-RJ4ditBvMBnzY/QEU5fWQhQ/bBTpkxjbe12PwP8c1cc="; + sha256 = "sha256-CYc/tFjDFXFlSY4/ykM7OR8HsUbYQUHL5IfGYw7to4k="; }; nativeBuildInputs = [ diff --git a/pkgs/development/tools/analysis/valgrind/default.nix b/pkgs/development/tools/analysis/valgrind/default.nix index 9949ec7ec7c70..6cee7ef029df6 100644 --- a/pkgs/development/tools/analysis/valgrind/default.nix +++ b/pkgs/development/tools/analysis/valgrind/default.nix @@ -6,11 +6,11 @@ stdenv.mkDerivation rec { pname = "valgrind"; - version = "3.20.0"; + version = "3.21.0"; src = fetchurl { url = "https://sourceware.org/pub/${pname}/${pname}-${version}.tar.bz2"; - sha256 = "sha256-hTbAMdvgeNNC8SH6iBqezSBctaeOY5AFrVcAEb2588Y="; + hash = "sha256-EM4WGLs+M/rRbreVUrCj4SEXYkSKDX/OEcimJDuayXE="; }; patches = [ diff --git a/pkgs/development/tools/argc/default.nix b/pkgs/development/tools/argc/default.nix index 853030a025f8c..94ab17e4eed22 100644 --- a/pkgs/development/tools/argc/default.nix +++ b/pkgs/development/tools/argc/default.nix @@ -2,31 +2,20 @@ , rustPlatform , fetchFromGitHub , installShellFiles -, fetchpatch }: rustPlatform.buildRustPackage rec { pname = "argc"; - version = "1.2.0"; + version = "1.3.0"; src = fetchFromGitHub { owner = "sigoden"; repo = pname; rev = "v${version}"; - hash = "sha256-sJINgB1cGtqLPl2RmwgChwnSrJL5TWu5AU6hfLhvmE4="; + hash = "sha256-mcJAtcGVqOQNafGu59QNcABvNNkImQ2qydZylf3a2Qs="; }; - cargoHash = "sha256-HrmqARhEKlAjrW6QieVEEKkfda6R69oLcG/6fd3rvWM="; - - patches = [ - # tests make the assumption that the compiled binary is in target/debug, - # which fails since `cargoBuildHook` uses `--release` and `--target` - (fetchpatch { - name = "fix-tests-with-release-or-target"; - url = "https://github.com/sigoden/argc/commit/a4f2db46e27cad14d3251ef0b25b6f2ea9e70f0e.patch"; - hash = "sha256-bsHSo11/RVstyzdg0BKFhjuWUTLdKO4qsWIOjTTi+HQ="; - }) - ]; + cargoHash = "sha256-Q7jL+9EwHD0HcRpS6SQ2M625z2h/eA7cUF60zDpekZY="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/development/tools/bazel-gazelle/default.nix b/pkgs/development/tools/bazel-gazelle/default.nix index 51fc1410c6595..e31ddd0b37683 100644 --- a/pkgs/development/tools/bazel-gazelle/default.nix +++ b/pkgs/development/tools/bazel-gazelle/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "bazel-gazelle"; - version = "0.30.0"; + version = "0.31.0"; src = fetchFromGitHub { owner = "bazelbuild"; repo = pname; rev = "v${version}"; - sha256 = "sha256-95nA6IEuAIh/6J6G2jADz3UKpQj5wybQ1HpaHSI+QRo="; + sha256 = "sha256-Y1otQcGtG7jIJE5G0DET8bFRVL6AEG0r98X5PufT7Lw="; }; vendorHash = null; diff --git a/pkgs/development/tools/bearer/default.nix b/pkgs/development/tools/bearer/default.nix index 015dae93adbb7..6ca484de15064 100644 --- a/pkgs/development/tools/bearer/default.nix +++ b/pkgs/development/tools/bearer/default.nix @@ -1,17 +1,19 @@ { lib , buildGoModule , fetchFromGitHub +, testers +, bearer }: buildGoModule rec { pname = "bearer"; - version = "1.8.0"; + version = "1.9.0"; src = fetchFromGitHub { owner = "bearer"; repo = "bearer"; rev = "refs/tags/v${version}"; - hash = "sha256-RwLYBz51zfJltsHOqRi7GJLP2ncPiqRqo229wv5jvdc="; + hash = "sha256-p+nQiIZfTScS6zNc8+qa+X5onfSecJzIrwMkWonJ3/w="; }; vendorHash = "sha256-FRB01Tfz87MZp4V0HPeiEgYV8KEPcbzkeUM0uIBh6DU="; @@ -23,9 +25,15 @@ buildGoModule rec { ldflags = [ "-s" "-w" + "-X=github.com/bearer/bearer/cmd/bearer/build.Version=${version}" ]; -# doCheck = false; + passthru.tests = { + version = testers.testVersion { + package = bearer; + command = "bearer version"; + }; + }; meta = with lib; { description = "Code security scanning tool (SAST) to discover, filter and prioritize security and privacy risks"; diff --git a/pkgs/development/tools/benthos/default.nix b/pkgs/development/tools/benthos/default.nix index 3f5903e173ad7..7d99238c19787 100644 --- a/pkgs/development/tools/benthos/default.nix +++ b/pkgs/development/tools/benthos/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "benthos"; - version = "4.15.0"; + version = "4.16.0"; src = fetchFromGitHub { owner = "benthosdev"; repo = "benthos"; rev = "refs/tags/v${version}"; - hash = "sha256-RqfTDE4dcVUegiaHsJMm9z9WV2dxFpgT/5LlM5105Oc="; + hash = "sha256-3cT+UBbjqCwglcGpAGpyxwD7MW5e/0w/BkSlS8E91vQ="; }; - vendorHash = "sha256-jfRmzCrw0qZJqt9tHkr/FmLWEAc911Z1hmk+nc6Lyb4="; + vendorHash = "sha256-1G1KxD+9aEnkaNsqPAVo+M+jslQcX4zZMQiKpN2PLRY="; doCheck = false; diff --git a/pkgs/development/tools/buf/default.nix b/pkgs/development/tools/buf/default.nix index 3e052c48dbaca..6f981dc93a113 100644 --- a/pkgs/development/tools/buf/default.nix +++ b/pkgs/development/tools/buf/default.nix @@ -10,16 +10,16 @@ buildGoModule rec { pname = "buf"; - version = "1.19.0"; + version = "1.20.0"; src = fetchFromGitHub { owner = "bufbuild"; repo = pname; rev = "v${version}"; - hash = "sha256-vLiOAlzIrIwMKPn8yl/YyFmXbFHFAZB1yLejQbAEivg="; + hash = "sha256-Tr8vsa7PfjoShep2/qhMFLWd4H9xXm9G2YwDS3RenSE="; }; - vendorHash = "sha256-DT3vffs33hGlylQLKc5o7Xble8Blyy4hgvE27CHnmJc="; + vendorHash = "sha256-NnN0MvcyMdIc7vCTTz8yHdRu0SzmmO0DgyYR2k9NPdk="; patches = [ # Skip a test that requires networking to be available to work. diff --git a/pkgs/development/tools/build-managers/apache-maven/default.nix b/pkgs/development/tools/build-managers/apache-maven/default.nix index 8e8df20795b3f..cb09482146f1f 100644 --- a/pkgs/development/tools/build-managers/apache-maven/default.nix +++ b/pkgs/development/tools/build-managers/apache-maven/default.nix @@ -18,6 +18,7 @@ stdenv.mkDerivation rec { inherit jdk; meta = with lib; { + mainProgram = "mvn"; description = "Build automation tool (used primarily for Java projects)"; homepage = "https://maven.apache.org/"; license = licenses.asl20; diff --git a/pkgs/development/tools/build-managers/meson/darwin-case-sensitive-fs.patch b/pkgs/development/tools/build-managers/meson/darwin-case-sensitive-fs.patch new file mode 100644 index 0000000000000..2de9484226b12 --- /dev/null +++ b/pkgs/development/tools/build-managers/meson/darwin-case-sensitive-fs.patch @@ -0,0 +1,51 @@ +From 1643ed0d8a9201732905bee51b096605d26aaaac Mon Sep 17 00:00:00 2001 +From: Randy Eckenrode <randy@largeandhighquality.com> +Date: Fri, 26 May 2023 00:10:45 -0400 +Subject: [PATCH] Fix test failures on Darwin on a case-sensitive fs + +This issue was encounetered while working on a contribution to nixpkgs. +Nix allows the store to be installed on a separate, case-sensitive APFS +volume. When the store is on a case-sensitive volume, these tests fail +because they try to use `foundation` instead of `Foundation`. +--- + .../failing/78 framework dependency with version/meson.build | 2 +- + test cases/objc/2 nsstring/meson.build | 2 +- + test cases/osx/6 multiframework/meson.build | 2 +- + 3 files changed, 3 insertions(+), 3 deletions(-) + +diff --git a/test cases/failing/78 framework dependency with version/meson.build b/test cases/failing/78 framework dependency with version/meson.build +index b7e04bab446..ee315ebcbd7 100644 +--- a/test cases/failing/78 framework dependency with version/meson.build ++++ b/test cases/failing/78 framework dependency with version/meson.build +@@ -5,4 +5,4 @@ if host_machine.system() != 'darwin' + endif + + # do individual frameworks have a meaningful version to test? And multiple frameworks might be listed... +-dep = dependency('appleframeworks', modules: 'foundation', version: '>0') ++dep = dependency('appleframeworks', modules: 'Foundation', version: '>0') +diff --git a/test cases/objc/2 nsstring/meson.build b/test cases/objc/2 nsstring/meson.build +index 94d2cf18ab4..2c483d50d68 100644 +--- a/test cases/objc/2 nsstring/meson.build ++++ b/test cases/objc/2 nsstring/meson.build +@@ -1,7 +1,7 @@ + project('nsstring', 'objc') + + if host_machine.system() == 'darwin' +- dep = dependency('appleframeworks', modules : 'foundation') ++ dep = dependency('appleframeworks', modules : 'Foundation') + elif host_machine.system() == 'cygwin' + error('MESON_SKIP_TEST GNUstep is not packaged for Cygwin.') + else +diff --git a/test cases/osx/6 multiframework/meson.build b/test cases/osx/6 multiframework/meson.build +index 28846243b21..57e5d61560b 100644 +--- a/test cases/osx/6 multiframework/meson.build ++++ b/test cases/osx/6 multiframework/meson.build +@@ -4,7 +4,7 @@ project('multiframework', 'objc') + # that causes a build failure when defining two modules. The + # arguments for the latter module overwrote the arguments for + # the first one rather than adding to them. +-cocoa_dep = dependency('appleframeworks', modules : ['AppKit', 'foundation']) ++cocoa_dep = dependency('appleframeworks', modules : ['AppKit', 'Foundation']) + + executable('deptester', + 'main.m', diff --git a/pkgs/development/tools/build-managers/meson/default.nix b/pkgs/development/tools/build-managers/meson/default.nix index f6004285ddb44..3914f65840967 100644 --- a/pkgs/development/tools/build-managers/meson/default.nix +++ b/pkgs/development/tools/build-managers/meson/default.nix @@ -26,6 +26,10 @@ python3.pkgs.buildPythonApplication rec { }; patches = [ + # Fix Meson tests that fail when the Nix store is case-sensitive APFS. + # https://github.com/mesonbuild/meson/pull/11820 + ./darwin-case-sensitive-fs.patch + # Meson is currently inspecting fewer variables than autoconf does, which # makes it harder for us to use setup hooks, etc. Taken from # https://github.com/mesonbuild/meson/pull/6827 diff --git a/pkgs/development/tools/build-managers/moon/default.nix b/pkgs/development/tools/build-managers/moon/default.nix new file mode 100644 index 0000000000000..6e77d6d26a30e --- /dev/null +++ b/pkgs/development/tools/build-managers/moon/default.nix @@ -0,0 +1,44 @@ +{ lib +, rustPlatform +, fetchFromGitHub +, darwin +, stdenv +, openssl +, pkg-config +}: + +rustPlatform.buildRustPackage rec { + pname = "moon"; + version = "v1.5.1"; + + src = fetchFromGitHub { + owner = "moonrepo"; + repo = pname; + rev = version; + hash = "sha256-TA27e0W0XSOC326lnO/mSlJNLGn6roJhd1CrQadWb/U="; + }; + + cargoHash = "sha256-Q044nxI6VGGal9I31VuZeGLho4KIz/Rzg4Lrn1prj4Y="; + + env = { + RUSTFLAGS = "-C strip=symbols"; + OPENSSL_NO_VENDOR = 1; + }; + + buildInputs = [ openssl ] ++ + lib.optionals stdenv.isDarwin [ + darwin.apple_sdk.frameworks.Security + darwin.apple_sdk.frameworks.SystemConfiguration + ]; + nativeBuildInputs = [ pkg-config ]; + + # Some tests fail, because test using internet connection and install NodeJS by example + doCheck = false; + + meta = with lib; { + description = "A task runner and repo management tool for the web ecosystem, written in Rust"; + homepage = "https://github.com/moonrepo/moon"; + license = licenses.mit; + maintainers = with maintainers; [ flemzord ]; + }; +} diff --git a/pkgs/development/tools/build-managers/xmake/default.nix b/pkgs/development/tools/build-managers/xmake/default.nix new file mode 100644 index 0000000000000..4ad117ab93f7f --- /dev/null +++ b/pkgs/development/tools/build-managers/xmake/default.nix @@ -0,0 +1,46 @@ +{ lib +, stdenv +, fetchurl +, pkg-config +, lua +, readline +, ncurses +, lz4 +, tbox +, xmake-core-sv +}: + +stdenv.mkDerivation rec { + pname = "xmake"; + version = "2.7.9"; + + src = fetchurl { + url = "https://github.com/xmake-io/xmake/releases/download/v${version}/xmake-v${version}.tar.gz"; + hash = "sha256-m0LYY0gz9IhbBbiUKd1gBE3KmSMvYJYyC42Ff7M9Ku8="; + }; + + nativeBuildInputs = [ + pkg-config + ]; + + buildInputs = [ + lua + lua.pkgs.cjson + readline + ncurses + lz4 + tbox + xmake-core-sv + ]; + + configureFlags = [ "--external=y" ]; + + meta = with lib; { + description = "A cross-platform build utility based on Lua"; + homepage = "https://xmake.io"; + license = licenses.asl20; + platforms = lua.meta.platforms; + maintainers = with maintainers; [ rewine ]; + }; +} + diff --git a/pkgs/development/tools/capnproto-rust/default.nix b/pkgs/development/tools/capnproto-rust/default.nix new file mode 100644 index 0000000000000..f3015427add7d --- /dev/null +++ b/pkgs/development/tools/capnproto-rust/default.nix @@ -0,0 +1,29 @@ +{ lib +, fetchCrate +, rustPlatform +, capnproto +}: + +rustPlatform.buildRustPackage rec { + pname = "capnproto-rust"; + version = "0.17.1"; + + src = fetchCrate { + crateName = "capnpc"; + inherit version; + sha256 = "sha256-7RfJUYV3X9w0FALP3pbhmeIqrWLqlgr4oNvPnBc+RY8="; + }; + + cargoHash = "sha256-wmoXdukXWagW61jbFBODnIjlBrV6Q+wgvuFG/TqkvVk="; + + nativeCheckInputs = [ + capnproto + ]; + + meta = with lib; { + description = "Cap'n Proto codegen plugin for Rust"; + homepage = "https://github.com/capnproto/capnproto-rust"; + license = licenses.mit; + maintainers = with maintainers; [ mikroskeem ]; + }; +} diff --git a/pkgs/development/tools/checkmate/default.nix b/pkgs/development/tools/checkmate/default.nix index b14079c749dd5..82fb04f344b05 100644 --- a/pkgs/development/tools/checkmate/default.nix +++ b/pkgs/development/tools/checkmate/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "checkmate"; - version = "0.8.4"; + version = "0.9.3"; src = fetchFromGitHub { owner = "adedayo"; repo = pname; rev = "v${version}"; - hash = "sha256-tgiZDTPIAYirPX6nGPEAt6BoYEC8uUJwT6zuHJqPF1w="; + hash = "sha256-XzzN4oIG6E4NsMGl4HzFlgAGhkRieRn+jyA0bT8fcrg="; }; - vendorHash = "sha256-eL1fLJwzVpU9NqaAl5R/fbaqI3AnEkl6EuPkMTuY86w="; + vendorHash = "sha256-D87b/LhHnu8xE0wRdB/wLIuf5NlqrVnKt2WAF29bdZo="; subPackages = [ "." ]; diff --git a/pkgs/development/tools/clj-kondo/default.nix b/pkgs/development/tools/clj-kondo/default.nix index 53a9573a92e19..41e63d8667bf1 100644 --- a/pkgs/development/tools/clj-kondo/default.nix +++ b/pkgs/development/tools/clj-kondo/default.nix @@ -2,11 +2,11 @@ buildGraalvmNativeImage rec { pname = "clj-kondo"; - version = "2023.05.18"; + version = "2023.05.26"; src = fetchurl { url = "https://github.com/clj-kondo/${pname}/releases/download/v${version}/${pname}-${version}-standalone.jar"; - sha256 = "sha256-ZWGP8P/RJ5vBm6ijAcAlqDwlICrGFa+uieLG49JMkFI="; + sha256 = "sha256-YnieYpRTBTnV3/jjcy1m469qH4m8uTeAVt3SG55r2/0="; }; extraNativeImageBuildArgs = [ diff --git a/pkgs/development/tools/cocoapods/Gemfile-beta.lock b/pkgs/development/tools/cocoapods/Gemfile-beta.lock index 164f32125dc46..bfc2b4c58baf3 100644 --- a/pkgs/development/tools/cocoapods/Gemfile-beta.lock +++ b/pkgs/development/tools/cocoapods/Gemfile-beta.lock @@ -3,7 +3,7 @@ GEM specs: CFPropertyList (3.0.6) rexml - activesupport (7.0.4.3) + activesupport (7.0.5) concurrent-ruby (~> 1.0, >= 1.0.2) i18n (>= 1.6, < 2) minitest (>= 5.1) @@ -15,10 +15,10 @@ GEM json (>= 1.5.1) atomos (0.1.3) claide (1.1.0) - cocoapods (1.12.0) + cocoapods (1.12.1) addressable (~> 2.8) claide (>= 1.0.2, < 2.0) - cocoapods-core (= 1.12.0) + cocoapods-core (= 1.12.1) cocoapods-deintegrate (>= 1.0.3, < 2.0) cocoapods-downloader (>= 1.6.0, < 2.0) cocoapods-plugins (>= 1.0.0, < 2.0) @@ -33,7 +33,7 @@ GEM nap (~> 1.0) ruby-macho (>= 2.3.0, < 3.0) xcodeproj (>= 1.21.0, < 2.0) - cocoapods-core (1.12.0) + cocoapods-core (1.12.1) activesupport (>= 5.0, < 8) addressable (~> 2.8) algoliasearch (~> 1.0) @@ -62,7 +62,7 @@ GEM fuzzy_match (2.0.4) gh_inspector (1.1.3) httpclient (2.8.3) - i18n (1.12.0) + i18n (1.13.0) concurrent-ruby (~> 1.0) json (2.6.3) minitest (5.18.0) diff --git a/pkgs/development/tools/cocoapods/Gemfile.lock b/pkgs/development/tools/cocoapods/Gemfile.lock index 2e2ffbf4e29a3..4c842e36c1acb 100644 --- a/pkgs/development/tools/cocoapods/Gemfile.lock +++ b/pkgs/development/tools/cocoapods/Gemfile.lock @@ -3,7 +3,7 @@ GEM specs: CFPropertyList (3.0.6) rexml - activesupport (7.0.4.3) + activesupport (7.0.5) concurrent-ruby (~> 1.0, >= 1.0.2) i18n (>= 1.6, < 2) minitest (>= 5.1) @@ -15,10 +15,10 @@ GEM json (>= 1.5.1) atomos (0.1.3) claide (1.1.0) - cocoapods (1.12.0) + cocoapods (1.12.1) addressable (~> 2.8) claide (>= 1.0.2, < 2.0) - cocoapods-core (= 1.12.0) + cocoapods-core (= 1.12.1) cocoapods-deintegrate (>= 1.0.3, < 2.0) cocoapods-downloader (>= 1.6.0, < 2.0) cocoapods-plugins (>= 1.0.0, < 2.0) @@ -33,7 +33,7 @@ GEM nap (~> 1.0) ruby-macho (>= 2.3.0, < 3.0) xcodeproj (>= 1.21.0, < 2.0) - cocoapods-core (1.12.0) + cocoapods-core (1.12.1) activesupport (>= 5.0, < 8) addressable (~> 2.8) algoliasearch (~> 1.0) @@ -62,7 +62,7 @@ GEM fuzzy_match (2.0.4) gh_inspector (1.1.3) httpclient (2.8.3) - i18n (1.12.0) + i18n (1.13.0) concurrent-ruby (~> 1.0) json (2.6.3) minitest (5.18.0) diff --git a/pkgs/development/tools/cocoapods/gemset-beta.nix b/pkgs/development/tools/cocoapods/gemset-beta.nix index 3d1b7f393a77e..8862a620a833f 100644 --- a/pkgs/development/tools/cocoapods/gemset-beta.nix +++ b/pkgs/development/tools/cocoapods/gemset-beta.nix @@ -5,10 +5,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "15m0b1im6i401ab51vzr7f8nk8kys1qa0snnl741y3sir3xd07jp"; + sha256 = "1c7k5i6531z5il4q1jnbrv7x7zcl3bgnxp5fzl71rzigk6zn53ym"; type = "gem"; }; - version = "7.0.4.3"; + version = "7.0.5"; }; addressable = { dependencies = ["public_suffix"]; @@ -69,10 +69,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "071kl1d0wi0v3w4gqjh9hzf8jclk59m2xn5dynmr0waammmm1yhw"; + sha256 = "0c25gpi6vrv4fvhwfqscjq5pqqg3g3s3vjm6z8xmgbi9bl9m7ws8"; type = "gem"; }; - version = "1.12.0"; + version = "1.12.1"; }; cocoapods-core = { dependencies = ["activesupport" "addressable" "algoliasearch" "concurrent-ruby" "fuzzy_match" "nap" "netrc" "public_suffix" "typhoeus"]; @@ -80,10 +80,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0gz84agvxbcp7ngkixkgyj9dcjd3q4q8qffx0b75kzg8p31ywl5b"; + sha256 = "03hz6i56603j3zlxy9is74bgs88isrnj9y7xc6wakr4c0m238hv9"; type = "gem"; }; - version = "1.12.0"; + version = "1.12.1"; }; cocoapods-deintegrate = { groups = ["default"]; @@ -244,10 +244,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1vdcchz7jli1p0gnc669a7bj3q1fv09y9ppf0y3k0vb1jwdwrqwi"; + sha256 = "1yk33slipi3i1kydzrrchbi7cgisaxym6pgwlzx7ir8vjk6wl90x"; type = "gem"; }; - version = "1.12.0"; + version = "1.13.0"; }; json = { groups = ["default"]; diff --git a/pkgs/development/tools/cocoapods/gemset.nix b/pkgs/development/tools/cocoapods/gemset.nix index 1e12c69fc6bd2..2a4f3e62890ee 100644 --- a/pkgs/development/tools/cocoapods/gemset.nix +++ b/pkgs/development/tools/cocoapods/gemset.nix @@ -5,10 +5,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "15m0b1im6i401ab51vzr7f8nk8kys1qa0snnl741y3sir3xd07jp"; + sha256 = "1c7k5i6531z5il4q1jnbrv7x7zcl3bgnxp5fzl71rzigk6zn53ym"; type = "gem"; }; - version = "7.0.4.3"; + version = "7.0.5"; }; addressable = { dependencies = ["public_suffix"]; @@ -67,10 +67,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "071kl1d0wi0v3w4gqjh9hzf8jclk59m2xn5dynmr0waammmm1yhw"; + sha256 = "0c25gpi6vrv4fvhwfqscjq5pqqg3g3s3vjm6z8xmgbi9bl9m7ws8"; type = "gem"; }; - version = "1.12.0"; + version = "1.12.1"; }; cocoapods-core = { dependencies = ["activesupport" "addressable" "algoliasearch" "concurrent-ruby" "fuzzy_match" "nap" "netrc" "public_suffix" "typhoeus"]; @@ -78,10 +78,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0gz84agvxbcp7ngkixkgyj9dcjd3q4q8qffx0b75kzg8p31ywl5b"; + sha256 = "03hz6i56603j3zlxy9is74bgs88isrnj9y7xc6wakr4c0m238hv9"; type = "gem"; }; - version = "1.12.0"; + version = "1.12.1"; }; cocoapods-deintegrate = { groups = ["default"]; @@ -232,10 +232,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1vdcchz7jli1p0gnc669a7bj3q1fv09y9ppf0y3k0vb1jwdwrqwi"; + sha256 = "1yk33slipi3i1kydzrrchbi7cgisaxym6pgwlzx7ir8vjk6wl90x"; type = "gem"; }; - version = "1.12.0"; + version = "1.13.0"; }; json = { groups = ["default"]; diff --git a/pkgs/development/tools/codespelunker/default.nix b/pkgs/development/tools/codespelunker/default.nix new file mode 100644 index 0000000000000..13258987eb362 --- /dev/null +++ b/pkgs/development/tools/codespelunker/default.nix @@ -0,0 +1,25 @@ +{ lib, buildGoModule, fetchFromGitHub }: + +buildGoModule rec { + pname = "codespelunker"; + version = "1.0.0"; + + src = fetchFromGitHub { + owner = "boyter"; + repo = "cs"; + rev = "v${version}"; + hash = "sha256-NN/78paePdvYHQ4J2aQu56PvEciOXY8DxHd4ajfVCFU="; + }; + + vendorHash = null; + + subPackages = [ "." ]; + + meta = with lib; { + description = "A command code search tool"; + homepage = "https://github.com/boyter/cs"; + license = with licenses; [ mit unlicense ]; + maintainers = with maintainers; [ viraptor ]; + mainProgram = "cs"; + }; +} diff --git a/pkgs/development/tools/continuous-integration/buildkite-agent/default.nix b/pkgs/development/tools/continuous-integration/buildkite-agent/default.nix index 0f846cdb8a5d3..20fb023d15db2 100644 --- a/pkgs/development/tools/continuous-integration/buildkite-agent/default.nix +++ b/pkgs/development/tools/continuous-integration/buildkite-agent/default.nix @@ -3,16 +3,16 @@ nixosTests }: buildGoModule rec { pname = "buildkite-agent"; - version = "3.46.1"; + version = "3.47.0"; src = fetchFromGitHub { owner = "buildkite"; repo = "agent"; rev = "v${version}"; - sha256 = "sha256-IhTzN0L5wKXmo2GkuSy6mQyqyUjh97Dugd6SQ0c2ng8="; + sha256 = "sha256-Hj1KaRgH4LOacLwHKoJfIKJ5ueNEgqWVEZrIvMl+bf4="; }; - vendorHash = "sha256-54v3P4uqU7A77yizjWAIzlvpjUaG8HHmH3j9p8d+LQc="; + vendorHash = "sha256-2yVykKfjNAlo4jUpcsUnpVaQoBLZF7xbzYQxOZqNiTQ="; postPatch = '' substituteInPlace bootstrap/shell/shell.go --replace /bin/bash ${bash}/bin/bash diff --git a/pkgs/development/tools/continuous-integration/cirrus-cli/default.nix b/pkgs/development/tools/continuous-integration/cirrus-cli/default.nix index bee76e13cd223..69f06fdba595c 100644 --- a/pkgs/development/tools/continuous-integration/cirrus-cli/default.nix +++ b/pkgs/development/tools/continuous-integration/cirrus-cli/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "cirrus-cli"; - version = "0.99.0"; + version = "0.100.0"; src = fetchFromGitHub { owner = "cirruslabs"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ekNdifSAwB2w5xys1B4eexgqlXwpkkvxJ6FQNTkIQEw="; + sha256 = "sha256-dUp0jmw4b+uzlhiFZ4IQLqgrPn03BSWh9mBP/cJ6idA="; }; - vendorHash = "sha256-BtcuqdVOOBG/yPdKaj+8nCvg050F/s/davblLUval+o="; + vendorHash = "sha256-IWZnenOY4//iSFFBnRDJBSj8Vm2uh3XDAh3gaI1OXjA="; ldflags = [ "-X github.com/cirruslabs/cirrus-cli/internal/version.Version=v${version}" diff --git a/pkgs/development/tools/continuous-integration/dagger/default.nix b/pkgs/development/tools/continuous-integration/dagger/default.nix index 3d1f4d5f56963..b850b3b555551 100644 --- a/pkgs/development/tools/continuous-integration/dagger/default.nix +++ b/pkgs/development/tools/continuous-integration/dagger/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "dagger"; - version = "0.5.3"; + version = "0.6.0"; src = fetchFromGitHub { owner = "dagger"; repo = "dagger"; rev = "v${version}"; - hash = "sha256-yMegSRO9wkpw2o429mLoDmUmysXmR93MULHjtc/V/cQ="; + hash = "sha256-NFQ1VPgY3WDwMsOi0wZ/b7sV/Ckv/WCeegSyLCnOPJM="; }; - vendorHash = "sha256-LuCbo7T0lXoQUBfSeCGw3SLydA2iM7dv7pYCterapHU="; + vendorHash = "sha256-KniHuJWkwZEzFcdtZUaYEoqcvmotbO+yuEB5L3Q3FGI="; proxyVendor = true; subPackages = [ diff --git a/pkgs/development/tools/continuous-integration/jenkins/default.nix b/pkgs/development/tools/continuous-integration/jenkins/default.nix index 9767f2e9289d9..3aa53619666d2 100644 --- a/pkgs/development/tools/continuous-integration/jenkins/default.nix +++ b/pkgs/development/tools/continuous-integration/jenkins/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec { pname = "jenkins"; - version = "2.387.2"; + version = "2.401.1"; src = fetchurl { url = "https://get.jenkins.io/war-stable/${version}/jenkins.war"; - hash = "sha256-XjnLBtm56xijIYtFoHxru4Afs1O3dOtb93SfiRtQDKk="; + hash = "sha256-YAtz6r95eFLjmRlUG4T3aG/2Abl8d7ROsAhD65HH3Ww="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/tools/continuous-integration/laminar/default.nix b/pkgs/development/tools/continuous-integration/laminar/default.nix index f847297831102..e32d3e4a97014 100644 --- a/pkgs/development/tools/continuous-integration/laminar/default.nix +++ b/pkgs/development/tools/continuous-integration/laminar/default.nix @@ -20,18 +20,18 @@ let sha256 = "1dx8wn38ds8d01kkih26fx1yrisg3kpz61qynjr4zil03ap0hrlr"; }; js.Chart = fetchurl { - url = "https://cdnjs.cloudflare.com/ajax/libs/Chart.js/2.7.2/Chart.min.js"; - sha256 = "1jh4h12qchsba03dx03mrvs4r8g9qfjn56xm56jqzgqf7r209xq9"; + url = "https://cdnjs.cloudflare.com/ajax/libs/Chart.js/3.9.1/chart.min.js"; + hash = "sha256-+8RZJua0aEWg+QVVKg4LEzEEm/8RFez5Tb4JBNiV5xA="; }; in stdenv.mkDerivation rec { pname = "laminar"; - version = "1.2"; + version = "1.3"; outputs = [ "out" "doc" ]; src = fetchFromGitHub { owner = "ohwgiles"; repo = "laminar"; rev = version; - sha256 = "sha256-PLnfiWpelgKhs4FNry60sm6/QdhYs76FnZ/ZcRmb4Ok="; + hash = "sha256-eo5WzvmjBEe0LAfZdQ/U0XepEE2kdWKKiyE4HOi3RXk="; }; patches = [ ./patches/no-network.patch ]; diff --git a/pkgs/development/tools/continuous-integration/laminar/patches/no-network.patch b/pkgs/development/tools/continuous-integration/laminar/patches/no-network.patch index 33683fdb15194..7b4d3134d69ff 100644 --- a/pkgs/development/tools/continuous-integration/laminar/patches/no-network.patch +++ b/pkgs/development/tools/continuous-integration/laminar/patches/no-network.patch @@ -4,8 +4,8 @@ does so unconditionally is twice as bad. Required files are downloaded as separate fixed-output derivations and put into correct location before build phase starts. ---- laminar-1.1/CMakeLists.txt -+++ laminar-1.1-new/CMakeLists.txt +--- laminar-1.3/CMakeLists.txt ++++ laminar-1.3-new/CMakeLists.txt @@ -82,13 +82,6 @@ COMMAND sh -c '( echo -n "\\#define INDEX_HTML_UNCOMPRESSED_SIZE " && wc -c < "${CMAKE_SOURCE_DIR}/src/resources/index.html" ) > index_html_size.h' DEPENDS src/resources/index.html) @@ -15,13 +15,13 @@ put into correct location before build phase starts. - js/vue.min.js EXPECTED_MD5 fb192338844efe86ec759a40152fcb8e) -file(DOWNLOAD https://raw.githubusercontent.com/drudru/ansi_up/v4.0.4/ansi_up.js - js/ansi_up.js EXPECTED_MD5 b31968e1a8fed0fa82305e978161f7f5) --file(DOWNLOAD https://cdnjs.cloudflare.com/ajax/libs/Chart.js/2.7.2/Chart.min.js -- js/Chart.min.js EXPECTED_MD5 f6c8efa65711e0cbbc99ba72997ecd0e) +-file(DOWNLOAD https://cdnjs.cloudflare.com/ajax/libs/Chart.js/3.9.1/chart.min.js +- js/Chart.min.js EXPECTED_MD5 7dd5ea7d2cf22a1c42b43c40093d2669) # ...and compile them generate_compressed_bins(${CMAKE_BINARY_DIR} js/vue.min.js js/ansi_up.js js/Chart.min.js) @@ -139,12 +132,12 @@ - target_link_libraries(laminar-tests ${GTEST_LIBRARY} capnp-rpc capnp kj-http kj-async kj pthread sqlite3 z) + target_link_libraries(laminar-tests ${GTEST_LIBRARIES} capnp-rpc capnp kj-http kj-async kj pthread sqlite3 z) endif() -set(SYSTEMD_UNITDIR /lib/systemd/system CACHE PATH "Path to systemd unit files") diff --git a/pkgs/development/tools/crd2pulumi/default.nix b/pkgs/development/tools/crd2pulumi/default.nix index 74cdd96da80ae..7bf85bdb4bfae 100644 --- a/pkgs/development/tools/crd2pulumi/default.nix +++ b/pkgs/development/tools/crd2pulumi/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "crd2pulumi"; - version = "1.2.4"; + version = "1.2.5"; src = fetchFromGitHub { owner = "pulumi"; repo = "crd2pulumi"; rev = "v${version}"; - sha256 = "sha256-2Lr6TMTZLxBisb8IZNIib4rQEvxj9KmljSQ5JGoeTEw="; + sha256 = "sha256-Km9zL9QQgQjmIaAILzJy8oSd9GyZn/MnmBYTRMFtXlE="; }; vendorHash = "sha256-iWFZ20U4S2utIqhoXgLtT4pp5e9h8IpbveIKHPe0AAw="; diff --git a/pkgs/development/tools/database/clickhouse-backup/default.nix b/pkgs/development/tools/database/clickhouse-backup/default.nix index d50a37b9eeff8..53b413c8c82aa 100644 --- a/pkgs/development/tools/database/clickhouse-backup/default.nix +++ b/pkgs/development/tools/database/clickhouse-backup/default.nix @@ -7,13 +7,13 @@ buildGoModule rec { pname = "clickhouse-backup"; - version = "2.2.6"; + version = "2.2.7"; src = fetchFromGitHub { owner = "AlexAkulov"; repo = pname; rev = "v${version}"; - sha256 = "sha256-oFGaNxK8cVrs+rkmJR9wSYB4+i3B8BGYhsuHbUTK3es="; + sha256 = "sha256-r84mbjkS3qdTNeM4t1S4YRJdKa6qNUzZVI0NOBM2MPI="; }; vendorHash = "sha256-UY/8fWPoO3d0g1/CN215Q4z744S2cCT7fB4ctpridAI="; diff --git a/pkgs/development/tools/database/dbmate/default.nix b/pkgs/development/tools/database/dbmate/default.nix index 625b99271ad25..fcca97ff9e1a2 100644 --- a/pkgs/development/tools/database/dbmate/default.nix +++ b/pkgs/development/tools/database/dbmate/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "dbmate"; - version = "2.3.0"; + version = "2.4.0"; src = fetchFromGitHub { owner = "amacneil"; repo = "dbmate"; rev = "refs/tags/v${version}"; - hash = "sha256-bWmRdrULXXVIaO5f3rntsVURnyojYFbhbZ43WvGzoZk="; + hash = "sha256-EwGyRDgd9di1gjefq9G3u+lVD2XEfdCULuLhtDAFDkY="; }; - vendorHash = "sha256-m1Nbu1bE04iOXnxW5kJfI9W95FU87eRKkOzg+YVvRsg="; + vendorHash = "sha256-t5GPbDBwq92erEpbkfIc/RMWkDr6Mb4oQ4BWmhCLrSc="; doCheck = false; diff --git a/pkgs/development/tools/database/mermerd/default.nix b/pkgs/development/tools/database/mermerd/default.nix index 2240c23433afa..2dd7317265182 100644 --- a/pkgs/development/tools/database/mermerd/default.nix +++ b/pkgs/development/tools/database/mermerd/default.nix @@ -7,13 +7,13 @@ buildGoModule rec { pname = "mermerd"; - version = "0.7.1"; + version = "0.8.0"; src = fetchFromGitHub { 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+[[package]] +name = "yansi" +version = "0.5.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "09041cd90cf85f7f8b2df60c646f853b7f535ce68f85244eb6731cf89fa498ec" + +[[package]] +name = "zeroize" +version = "1.6.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2a0956f1ba7c7909bfb66c2e9e4124ab6f6482560f6628b5aaeba39207c9aad9" diff --git a/pkgs/development/tools/database/surrealdb-migrations/default.nix b/pkgs/development/tools/database/surrealdb-migrations/default.nix index cc7254345d989..852f75dcb62e6 100644 --- a/pkgs/development/tools/database/surrealdb-migrations/default.nix +++ b/pkgs/development/tools/database/surrealdb-migrations/default.nix @@ -10,7 +10,7 @@ let pname = "surrealdb-migrations"; - version = "0.9.5"; + version = "0.9.9"; in rustPlatform.buildRustPackage rec { inherit pname version; @@ -19,10 +19,12 @@ rustPlatform.buildRustPackage rec { owner = "Odonno"; repo = pname; rev = "v${version}"; - sha256 = "sha256-raDWqdOid4WSl6Ads8dmh7KI6NMWZrSwGfh+wbd/Vao="; + hash = "sha256-wVaNsdNrRhb6lai60c1msBWTtLWsESOJNoHFJzdHtrs="; }; - cargoSha256 = "sha256-1+cvOhDeH9vx/8J1RwKLPdkBmqBKFmbNXv3H44pZfj0="; + cargoLock = { + lockFile = ./Cargo.lock; + }; buildInputs = [ ] ++ lib.optionals stdenv.isDarwin [ Security ]; diff --git a/pkgs/development/tools/datree/default.nix b/pkgs/development/tools/datree/default.nix index 6a9ee36e9f913..409a40120e295 100644 --- a/pkgs/development/tools/datree/default.nix +++ b/pkgs/development/tools/datree/default.nix @@ -8,13 +8,13 @@ buildGoModule rec { pname = "datree"; - version = "1.9.2"; + version = "1.9.3"; src = fetchFromGitHub { owner = "datreeio"; repo = "datree"; rev = "refs/tags/${version}"; - hash = "sha256-yE2HrFhmiYriIgmYumcIQ6/ptr6m44Lm7wrfaeu8CeU="; + hash = "sha256-tf/1BJ23EpFjdHYNQJMben6CEAsZ9cvLoyI6BVn6roo="; }; vendorHash = "sha256-ECVKofvmLuFAFvncq63hYUaYW8/2+F4gZr8wIGQyrdU="; diff --git a/pkgs/development/tools/ddosify/default.nix b/pkgs/development/tools/ddosify/default.nix index dd54db22925dd..778a08b383f7d 100644 --- a/pkgs/development/tools/ddosify/default.nix +++ b/pkgs/development/tools/ddosify/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "ddosify"; - version = "1.0.1"; + version = "1.0.3"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "sha256-QinC03SdJ0V2t69LJYsoV+KV13D+OcTkLetFe8vLF3Y="; + sha256 = "sha256-SkKETcKlH6OF6+gLBq/6P7txcmMRxoXc1Mm005piCHc="; }; vendorHash = "sha256-cGhMhX+SEv9fejViLZrEwXg584o204OQ5iR6AkxKnXo="; diff --git a/pkgs/development/tools/devbox/default.nix b/pkgs/development/tools/devbox/default.nix index 595ad5b5c27f6..c4cf8e2354ca8 100644 --- a/pkgs/development/tools/devbox/default.nix +++ b/pkgs/development/tools/devbox/default.nix @@ -5,13 +5,13 @@ }: buildGoModule rec { pname = "devbox"; - version = "0.5.2"; + version = "0.5.4"; src = fetchFromGitHub { owner = "jetpack-io"; repo = pname; rev = version; - hash = "sha256-fC/cUtuXTxjDv35gJXN7meq/uRFH3nsVULxmOJe8WwY="; + hash = "sha256-PcD7VNIB50AD1Ho3agM6DocDgAxrRWjPBpK1NDgE+IU="; }; ldflags = [ @@ -23,7 +23,7 @@ buildGoModule rec { # integration tests want file system access doCheck = false; - vendorHash = "sha256-Ct1hftgMYAF8DPdnYTB1QQYD0HGC4wifIbMX+TrgDdk="; + vendorHash = "sha256-SkhV8xcj2Pdt/D650OANbMYaZ2VDkJqziW5Q/NT6Vmc="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/development/tools/diesel-cli/default.nix b/pkgs/development/tools/diesel-cli/default.nix index b33d0647cad9f..29b98eb77fa52 100644 --- a/pkgs/development/tools/diesel-cli/default.nix +++ b/pkgs/development/tools/diesel-cli/default.nix @@ -25,15 +25,15 @@ in rustPlatform.buildRustPackage rec { pname = "diesel-cli"; - version = "2.0.1"; + version = "2.1.0"; src = fetchCrate { inherit version; crateName = "diesel_cli"; - sha256 = "sha256-IHxK5hI0RYNFQQe/Kfao0Zw8L3bs1gdN1xwmO4kKi08="; + hash = "sha256-FdmjfywvDD3mo1d1pUQMYvebo5AUTa99gQbQuOWmZZk="; }; - cargoSha256 = "sha256-KoTeDzUk/KbUx+4NLVifX3yehm4V13LJ/YUmzoUSuDM="; + cargoHash = "sha256-onPzM9E53VUogZdIu3jAeB4dL3MC2FP3b6QWZ5Tr3j0="; nativeBuildInputs = [ installShellFiles pkg-config ]; diff --git a/pkgs/development/tools/doctl/default.nix b/pkgs/development/tools/doctl/default.nix index 6bb75fc2ee7d0..fbcc8780eb2c8 100644 --- a/pkgs/development/tools/doctl/default.nix +++ b/pkgs/development/tools/doctl/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "doctl"; - version = "1.96.0"; + version = "1.96.1"; vendorHash = null; @@ -31,7 +31,7 @@ buildGoModule rec { owner = "digitalocean"; repo = "doctl"; rev = "v${version}"; - sha256 = "sha256-UptiVsT7pLOcJ4kXDnXiwpuloGKTY4AZMIxSYllfuUo="; + sha256 = "sha256-COkD0YFij07mHpkeJSnZXLaB9olZGBN/HpFb06ag4Rs="; }; meta = with lib; { diff --git a/pkgs/development/tools/documentation/doxygen/default.nix b/pkgs/development/tools/documentation/doxygen/default.nix index 29f4fcfd4ae83..d735637cb53d3 100644 --- a/pkgs/development/tools/documentation/doxygen/default.nix +++ b/pkgs/development/tools/documentation/doxygen/default.nix @@ -13,13 +13,13 @@ stdenv.mkDerivation rec { pname = "doxygen"; - version = "1.9.6"; + version = "1.9.7"; src = fetchFromGitHub { owner = "doxygen"; repo = "doxygen"; rev = "Release_${lib.replaceStrings [ "." ] [ "_" ] version}"; - sha256 = "sha256-SqboPBqK7gDVTTjGgCUB9oIGBZR55EA7x65a0wumiKw="; + sha256 = "sha256-ezeMQk+Vyi9qNsYwbaRRruaIYGY8stFf71W7GonXqco="; }; nativeBuildInputs = [ diff --git a/pkgs/development/tools/earthly/default.nix b/pkgs/development/tools/earthly/default.nix index cb76c5387dfc3..ab03d6e0eb169 100644 --- a/pkgs/development/tools/earthly/default.nix +++ b/pkgs/development/tools/earthly/default.nix @@ -1,35 +1,42 @@ -{ lib, buildGoModule, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub, stdenv }: buildGoModule rec { pname = "earthly"; - version = "0.6.23"; + version = "0.7.7"; src = fetchFromGitHub { owner = "earthly"; repo = "earthly"; rev = "v${version}"; - sha256 = "sha256-RbLAnk2O7wqY0OQLprWuRDUWMicqcLOPia+7aRuXbsk="; + sha256 = "sha256-tYoC9OCNAtdQwWyznac5PVl7KLObbFfjs138y5LeQ2A="; }; - vendorSha256 = "sha256-MDyQ9Wn5A5F5CQCfEXzkXZi/Fg6sT/Ikv+Y7fvLY8LA="; + vendorSha256 = "sha256-1y34WH1JGAs1eDxreHMqUlGTyrixUFIV1DPN/N5wzS4="; + subPackages = [ "cmd/earthly" "cmd/debugger" ]; + + CGO_ENABLED = 0; ldflags = [ - "-s" "-w" + "-s" + "-w" "-X main.Version=v${version}" - "-X main.DefaultBuildkitdImage=earthly/buildkitd:v${version}" + "-X main.DefaultBuildkitdImage=docker.io/earthly/buildkitd:v${version}" + "-X main.GitSha=v${version}" + "-X main.DefaultInstallationName=earthly" + ] ++ lib.optionals stdenv.isLinux [ + "-extldflags '-static'" ]; - BUILDTAGS = "dfrunmount dfrunsecurity dfsecrets dfssh dfrunnetwork"; - preBuild = '' - makeFlagsArray+=(BUILD_TAGS="${BUILDTAGS}") - ''; - - # For some reasons the tests fail, but the program itself seems to work. - doCheck = false; + tags = [ + "dfrunmount" + "dfrunnetwork" + "dfrunsecurity" + "dfsecrets" + "dfssh" + ]; postInstall = '' mv $out/bin/debugger $out/bin/earthly-debugger - mv $out/bin/shellrepeater $out/bin/earthly-shellrepeater ''; meta = with lib; { @@ -37,6 +44,6 @@ buildGoModule rec { homepage = "https://earthly.dev/"; changelog = "https://github.com/earthly/earthly/releases/tag/v${version}"; license = licenses.mpl20; - maintainers = with maintainers; [ zoedsoupe ]; + maintainers = with maintainers; [ zoedsoupe konradmalik ]; }; } diff --git a/pkgs/development/tools/electron/binary/default.nix b/pkgs/development/tools/electron/binary/default.nix index 1056803fd5b23..ff3290189a099 100644 --- a/pkgs/development/tools/electron/binary/default.nix +++ b/pkgs/development/tools/electron/binary/default.nix @@ -24,7 +24,7 @@ let in rec { - electron-bin = electron_24-bin; + electron-bin = electron_25-bin; electron_9-bin = mkElectron "9.4.4" { x86_64-linux = "781d6ca834d415c71078e1c2c198faba926d6fce19e31448bbf4450869135450"; @@ -151,30 +151,39 @@ rec { headers = "0zvwd3gz5y3yq5jgkswnarv75j05lfaz58w37fidq5aib1hi50hn"; }; - electron_22-bin = mkElectron "22.3.8" { - armv7l-linux = "6488e32debf6e4a2027897b7748e2fdb6e27d1d05475e7aacd30e798e92af996"; - aarch64-linux = "ab93be098c74edcc6f66ed461cbe6eb5f8185245edb611252ebb91a07e04ebe4"; - x86_64-linux = "40a2394417c976dbe055fe96875f482bb73731991f547a977d049dba6a067c0e"; - x86_64-darwin = "47cf839bbb59fc9d4abfff9bdfe3ec8ada88c0cfafe451227034e20592565344"; - aarch64-darwin = "6dcc9ae7928f6fa01bc17377bd78ddef4fe5beb9a69ee293a8df60b2cc058a00"; - headers = "1g4d81iwbkhw3b75q4fh1qajxfwwryqfbiqhviz1yqcw01cbah4f"; - }; - - electron_23-bin = mkElectron "23.3.1" { - armv7l-linux = "0a0b4baf598fac6eed150436cccc754277c6c5765dcf06d33bf1457eb570e260"; - aarch64-linux = "6aae5e986fd578d7ba8a6bf0f4631f314d48bac58f66f493e79f35ab9af911c1"; - x86_64-linux = "084e16b84df37e31761cbf7f76effdd673d923c17115608b95a7b0cfc84caa46"; - x86_64-darwin = "811309609df9dcd6e727fac6694b56847a1401d76eee94c26f12343e11a81beb"; - aarch64-darwin = "2c092341413725c7609f6a891e6552dd094807fbce1a6f272be85723041e3b6f"; - headers = "0as0wri865kj9m44qka8by8nw3c4g1hgyc8ar5m18r8kr0x28z00"; - }; - - electron_24-bin = mkElectron "24.2.0" { - armv7l-linux = "c611ec6a6620a199a0656656c191384f498cff7e7831c45e449728379de4ba23"; - aarch64-linux = "e81baa9f45dcf36f10960e823143bd30633ff679b4253a266896028c3b438959"; - x86_64-linux = "8d7780dd2afcfe5e94a2cf574f4fa10a2a2c691227771fca49051c524ac67513"; - x86_64-darwin = "23f77fbde72cad8315e7d370d929cdceb5408f5533494241fc5dd503d8ad0cdc"; - aarch64-darwin = "529d0745e99278c66f631c81edbef22a5ad8871332366002edd371b409850b24"; - headers = "1ydj6fddrn8h6igzim637di39i4vx7fajc9n98nhlzvpmc43rgbs"; + electron_22-bin = mkElectron "22.3.12" { + armv7l-linux = "aee831671cb7f869366ed165900743e6e8a53845e9a059a68ef81bb725c93dca"; + aarch64-linux = "35d8ba41d2247a26923e93d7b96425b39ac821fd24d31c286718a1e5b64a7156"; + x86_64-linux = "616bc674bf7cbdd6369888b987514c7a63442755561e1f5e6d85575e881d107e"; + x86_64-darwin = "e421bc52de410b45b68bae2f13c405ef0ef43f8aa2046419a0f15e38d04f214a"; + aarch64-darwin = "f2d4b327df42f9801e09260b94adaeed878e02b7e4a9adfd5912b754181ead3c"; + headers = "1k5a8sg8g5jzv9vih4n81wwlvi14snzxgvrh13w5canihj6hiygi"; + }; + + electron_23-bin = mkElectron "23.3.5" { + armv7l-linux = "3525ab12e582c36b7e905550a13a4f8c205586eccbd818db7f705ee46be19939"; + aarch64-linux = "49e9ff90165d12accd34e8fc6808016e20f7588fba2195af39f4467698adbcf0"; + x86_64-linux = "168c9332448276c7f0338bffd02a90d6bdea90c4789ae655464831f74d3e6e43"; + x86_64-darwin = "453ddddbe0a935b5349410d783f3dba079b4e913bfbd6b56a9c4927c4c3f1601"; + aarch64-darwin = "a41bd320d73143f0469e6d250e65f2f629bef2c36f1e6730110b86436842d2d1"; + headers = "11w1vz5kyklahhn7046bccknym24f076b5p19mxjwmmdbvggmvsq"; + }; + + electron_24-bin = mkElectron "24.4.1" { + armv7l-linux = "4c0d12186e1fe918b0e5a618fc10eabb2b120b432ea5ff45e29c41a163f338f4"; + aarch64-linux = "e9e9ac6b24e6dd79650be3619a98187fb9d07cc97bb181051912bead7c06cefe"; + x86_64-linux = "4751d5320e0a2668e5b964dccf433fc7e537a3cb7f215d3042fd7d61d7f1198e"; + x86_64-darwin = "a8417febf79db15f15edf209a03dcf4240ed0d7b7e731b31224173b685a768c2"; + aarch64-darwin = "f2efec7bfe62002e1b52b0e14fa7bc5fd586812c0c49fbb0aa99830c20088484"; + headers = "13zicpwzsnl34nvy0y15ykfabkda4991h6kc933r9n4fz4wk7493"; + }; + + electron_25-bin = mkElectron "25.0.1" { + armv7l-linux = "1bfdb7e6d85880dd1695d8fab69558e69728fb4f23756375ba7f7bc4f441516a"; + aarch64-linux = "0a8b44cc2c280a31f7a7e3c9927e55e4ea8ad3841a8cd4fe70237771e6c71023"; + x86_64-linux = "c7c85dd575b7d1eccba8d338c91f524663514eb43c2fb936035c219bd84ab885"; + x86_64-darwin = "f4a51adf95b37bfe39320ab7f8025b148a6b6b7140bd96101788a62b77c13d8c"; + aarch64-darwin = "6a26d58eb5b37ce9852668e59330ca54bf6226e8bb1172e179bb9ddb592e4b8c"; + headers = "0par0jw88j5n0jpg0lik6gws7iwqq45jcfs42w7vxz2g2nkpdgxp"; }; } diff --git a/pkgs/development/tools/eslint_d/default.nix b/pkgs/development/tools/eslint_d/default.nix new file mode 100644 index 0000000000000..abaf5857cf791 --- /dev/null +++ b/pkgs/development/tools/eslint_d/default.nix @@ -0,0 +1,24 @@ +{ lib, buildNpmPackage, fetchFromGitHub }: + +buildNpmPackage rec { + pname = "eslint_d"; + version = "12.2.1"; + + src = fetchFromGitHub { + owner = "mantoni"; + repo = "eslint_d.js"; + rev = "v${version}"; + hash = "sha256-rups2y07Y3GkvGt/T9lPG0NUoCxddp/P9PAYczZYNIw="; + }; + + npmDepsHash = "sha256-enHppjkX1syANgFmfAX+LlISyN5ltADjojjrvukAI+I="; + + dontNpmBuild = true; + + meta = with lib; { + description = "Makes eslint the fastest linter on the planet"; + homepage = "github.com/mantoni/eslint_d.js"; + license = licenses.mit; + maintainers = [ maintainers.ehllie ]; + }; +} diff --git a/pkgs/development/tools/fastddsgen/default.nix b/pkgs/development/tools/fastddsgen/default.nix index d181c2fb8e05d..707e3ae6b7aa2 100644 --- a/pkgs/development/tools/fastddsgen/default.nix +++ b/pkgs/development/tools/fastddsgen/default.nix @@ -1,14 +1,14 @@ { lib, stdenv, runtimeShell, writeText, fetchFromGitHub, gradle_7, openjdk17, git, perl, cmake }: let pname = "fastddsgen"; - version = "2.3.0"; + version = "2.4.0"; src = fetchFromGitHub { owner = "eProsima"; repo = "Fast-DDS-Gen"; rev = "v${version}"; fetchSubmodules = true; - hash = "sha256-lxMv1hXjHFslJts63/FJPjj0mAKTluY/pNTvf15Oo9o="; + hash = "sha256-CSlimEShTxjr6II9YSuNFc/pdbMmqVMCQA0ZJ9rl5j8="; }; gradle = gradle_7; @@ -35,7 +35,7 @@ let outputHashAlgo = "sha256"; outputHashMode = "recursive"; - outputHash = "sha256-wnnoyaO1QndAYrqmYu1fO6OJrP1NQs8IX4uh37dVntY="; + outputHash = "sha256-ZGWTK665wIX/Biz4JDrbaU4EZNqT7Q8o6DSpziUd/SM="; }; in stdenv.mkDerivation { diff --git a/pkgs/development/tools/frece/default.nix b/pkgs/development/tools/frece/default.nix index 2eebf2bcfbe98..64de6d162f0a0 100644 --- a/pkgs/development/tools/frece/default.nix +++ b/pkgs/development/tools/frece/default.nix @@ -18,6 +18,6 @@ rustPlatform.buildRustPackage rec { homepage = "https://github.com/YodaEmbedding/frece"; license = licenses.mit; platforms = platforms.linux; - maintainers = with maintainers; [ WeebSorceress ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/tools/ginkgo/default.nix b/pkgs/development/tools/ginkgo/default.nix index cad04204916bb..87bab08fd8133 100644 --- a/pkgs/development/tools/ginkgo/default.nix +++ b/pkgs/development/tools/ginkgo/default.nix @@ -2,15 +2,15 @@ buildGoModule rec { pname = "ginkgo"; - version = "2.9.5"; + version = "2.9.7"; src = fetchFromGitHub { owner = "onsi"; repo = "ginkgo"; rev = "v${version}"; - sha256 = "sha256-1Hb8pCvPs/L5UU280XwwEOnQ1CjJjgw0+GdCbtLkIpg="; + sha256 = "sha256-+Wkd0+RSNnJb1ganYGhnRdLZGofTwWtDEN82dhc6HPc="; }; - vendorHash = "sha256-IxyPRUS7aqkfZ+hjtuopCd95dgiTgVdg1thSiTBZArg="; + vendorHash = "sha256-x4IghXr80sDPZhe97Q+04Mfcnvku/S/tNPZ9RSUmiVE="; # integration tests expect more file changes # types tests are missing CodeLocation diff --git a/pkgs/development/tools/godot/3/default.nix b/pkgs/development/tools/godot/3/default.nix index 6873fc44f94a3..84b3d60ea3259 100644 --- a/pkgs/development/tools/godot/3/default.nix +++ b/pkgs/development/tools/godot/3/default.nix @@ -79,9 +79,9 @@ stdenv.mkDerivation rec { installPhase = '' mkdir -p "$out/bin" - cp bin/godot.* $out/bin/godot + cp bin/godot.* $out/bin/godot3 - wrapProgram "$out/bin/godot" \ + wrapProgram "$out/bin/godot3" \ --set ALSA_PLUGIN_DIR ${alsa-plugins}/lib/alsa-lib mkdir "$dev" @@ -91,11 +91,12 @@ stdenv.mkDerivation rec { cp misc/dist/linux/godot.6 "$man/share/man/man6/" mkdir -p "$out"/share/{applications,icons/hicolor/scalable/apps} - cp misc/dist/linux/org.godotengine.Godot.desktop "$out/share/applications/" + cp misc/dist/linux/org.godotengine.Godot.desktop "$out/share/applications/org.godotengine.Godot3.desktop" cp icon.svg "$out/share/icons/hicolor/scalable/apps/godot.svg" cp icon.png "$out/share/icons/godot.png" - substituteInPlace "$out/share/applications/org.godotengine.Godot.desktop" \ - --replace "Exec=godot" "Exec=$out/bin/godot" + substituteInPlace "$out/share/applications/org.godotengine.Godot3.desktop" \ + --replace "Exec=godot" "Exec=$out/bin/godot3" \ + --replace "Godot Engine" "Godot Engine 3" ''; meta = with lib; { diff --git a/pkgs/development/tools/godot/4/default.nix b/pkgs/development/tools/godot/4/default.nix index 87145c9f398a3..8e77a7e9e298f 100644 --- a/pkgs/development/tools/godot/4/default.nix +++ b/pkgs/development/tools/godot/4/default.nix @@ -109,14 +109,15 @@ stdenv.mkDerivation rec { installPhase = '' mkdir -p "$out/bin" - cp bin/godot.* $out/bin/godot + cp bin/godot.* $out/bin/godot4 installManPage misc/dist/linux/godot.6 mkdir -p "$out"/share/{applications,icons/hicolor/scalable/apps} - cp misc/dist/linux/org.godotengine.Godot.desktop "$out/share/applications/" - substituteInPlace "$out/share/applications/org.godotengine.Godot.desktop" \ - --replace "Exec=godot" "Exec=$out/bin/godot" + cp misc/dist/linux/org.godotengine.Godot.desktop "$out/share/applications/org.godotengine.Godot4.desktop" + substituteInPlace "$out/share/applications/org.godotengine.Godot4.desktop" \ + --replace "Exec=godot" "Exec=$out/bin/godot4" \ + --replace "Godot Engine" "Godot Engine 4" cp icon.svg "$out/share/icons/hicolor/scalable/apps/godot.svg" cp icon.png "$out/share/icons/godot.png" ''; diff --git a/pkgs/development/tools/gojq/default.nix b/pkgs/development/tools/gojq/default.nix index 3fd6f7dacfed3..09c78835e5f97 100644 --- a/pkgs/development/tools/gojq/default.nix +++ b/pkgs/development/tools/gojq/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "gojq"; - version = "0.12.12"; + version = "0.12.13"; src = fetchFromGitHub { owner = "itchyny"; repo = pname; rev = "v${version}"; - hash = "sha256-axiIHy6vNs0ySVP4UnYZ9J+GeAOz3LJ9vOP1xT4dcME="; + hash = "sha256-tlnj0CCsPZRQjIZCvNPjN0JD6oqRDvdWOCYR3tYMPUA="; }; - vendorHash = "sha256-kHwCh/6yaPaFce5k3NgAQ1GsoVmvmfIJujVaMwqrLBM="; + vendorHash = "sha256-DVJZ35C+6SuhaaGDM3u+3fB1497qaW6oTByAUPVwhJI="; ldflags = [ "-s" "-w" ]; diff --git a/pkgs/development/tools/golangci-lint/default.nix b/pkgs/development/tools/golangci-lint/default.nix index 30529f03ffdb2..3b96d563e7767 100644 --- a/pkgs/development/tools/golangci-lint/default.nix +++ b/pkgs/development/tools/golangci-lint/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "golangci-lint"; - version = "1.52.2"; + version = "1.53.2"; src = fetchFromGitHub { owner = "golangci"; repo = "golangci-lint"; rev = "v${version}"; - hash = "sha256-FmNXjOMDDdGxMQvy5f1NoaqrKFpmlPWclXooMxXP8zg="; + hash = "sha256-fsK9uHPh3ltZpAlo4kDp9MtGKBYqDMxJSygvaloKbMs="; }; - vendorHash = "sha256-BhD3a0LNc3hpiH4QC8FpmNn3swx3to8+6gfcgZT8TLg="; + vendorHash = "sha256-gg4E+6u1aukyXWJrRJRmhdeqUN/zw76kznSuE+99CDc="; subPackages = [ "cmd/golangci-lint" ]; diff --git a/pkgs/development/tools/grpc-gateway/default.nix b/pkgs/development/tools/grpc-gateway/default.nix index acb035694bb63..84174993ef2fb 100644 --- a/pkgs/development/tools/grpc-gateway/default.nix +++ b/pkgs/development/tools/grpc-gateway/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "grpc-gateway"; - version = "2.15.2"; + version = "2.16.0"; src = fetchFromGitHub { owner = "grpc-ecosystem"; repo = "grpc-gateway"; rev = "v${version}"; - sha256 = "sha256-0fpVSFo+o+M7vwwHIrYQZcAjdZjASdWz/cKXnPr6Je8="; + sha256 = "sha256-yoy3wESegXxlyaelex2gqr3GdzwwjxK7YTAzDCILr/c="; }; - vendorHash = "sha256-WHwZ0EAJIz7mZr27x+Z7PKLLAiw1z2rQvvNynpMJQDw="; + vendorHash = "sha256-dxzAiLEiZ+2+J9ZrkBemUt+slxz1zUa9Fx0VhUjFdN0="; meta = with lib; { description = diff --git a/pkgs/development/tools/hclfmt/default.nix b/pkgs/development/tools/hclfmt/default.nix index 63042f8c38234..ce2baa4fe3d5e 100644 --- a/pkgs/development/tools/hclfmt/default.nix +++ b/pkgs/development/tools/hclfmt/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "hclfmt"; - version = "2.16.2"; + version = "2.17.0"; src = fetchFromGitHub { owner = "hashicorp"; repo = "hcl"; rev = "v${version}"; - hash = "sha256-7RHRUIZhF6UOZDi85HAzQhzD7c8Y4aPjt4Ly3KUM26k="; + hash = "sha256-6OALbouj1b6Jbtv0znpkfgYS4MyBpxQ56Sen3OJYaHs="; }; - vendorHash = "sha256-QZzDFVAmmjkm7n/KpMxDMAjShKiVVGZbZB1W3/TeVjs="; + vendorHash = "sha256-SjewF3q4vQ3oWR+vxqpZVP6St8db/GXezTDWYUeK2g8="; # The code repository includes other tools which are not useful. Only build # hclfmt. diff --git a/pkgs/development/tools/hcloud/default.nix b/pkgs/development/tools/hcloud/default.nix index 735e307849635..0fbce0647b3a5 100644 --- a/pkgs/development/tools/hcloud/default.nix +++ b/pkgs/development/tools/hcloud/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "hcloud"; - version = "1.34.0"; + version = "1.34.1"; src = fetchFromGitHub { owner = "hetznercloud"; repo = "cli"; rev = "v${version}"; - sha256 = "sha256-9jiRCatd6rWbzrekBgBU6yW56xz3x0jyzdcpB7TI7zI="; + sha256 = "sha256-sibLu/lar1up1E0QiNRiWOwHqb8eYtE01tSLh8d2cqs="; }; vendorHash = "sha256-Q9le/jbWkABlobn4qG/h48HEDYAPSkiy1N9YlUo6swQ="; diff --git a/pkgs/development/tools/konstraint/default.nix b/pkgs/development/tools/konstraint/default.nix index f6209fec3f210..cbaa5c2586530 100644 --- a/pkgs/development/tools/konstraint/default.nix +++ b/pkgs/development/tools/konstraint/default.nix @@ -2,15 +2,15 @@ buildGoModule rec { pname = "konstraint"; - version = "0.28.0"; + version = "0.29.0"; src = fetchFromGitHub { owner = "plexsystems"; repo = pname; rev = "v${version}"; - sha256 = "sha256-d5PmWhWRBch+q+4CrYMFBf/IRoEdy7CH8kEnJ0sl+AQ="; + sha256 = "sha256-j1pvTA3XrmQTgnyyrTAOmcgIJPBcj54YGCPqBjzNIog="; }; - vendorHash = "sha256-juhMRSAgvt83jF8LRefJuyPwKD392IINLOj13dBhZdQ="; + vendorHash = "sha256-75XFFJtVhVLpZaPDQghlqols54ZuXzpzUx1dw4vSlRg="; # Exclude go within .github folder excludedPackages = ".github"; diff --git a/pkgs/development/tools/kustomize/kustomize-sops.nix b/pkgs/development/tools/kustomize/kustomize-sops.nix index a4057f4e4d391..ee6c8d0b5c4b5 100644 --- a/pkgs/development/tools/kustomize/kustomize-sops.nix +++ b/pkgs/development/tools/kustomize/kustomize-sops.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "kustomize-sops"; - version = "4.2.0"; + version = "4.2.1"; src = fetchFromGitHub { owner = "viaduct-ai"; repo = pname; rev = "v${version}"; - sha256 = "sha256-vIFq42wp5Do4+Wc52D+abxRxtk+NrJ+mRxRzIY7ZcQA="; + sha256 = "sha256-Jm4mA91fyXQ8eScvRGDAmCBFVqT2GP57XIBZQo/bApg="; }; vendorHash = "sha256-tNYPgXFDJuNRlrVE0ywg77goNzfoWHFVzOG9mHqK3q8="; diff --git a/pkgs/development/tools/language-servers/ansible-language-server/default.nix b/pkgs/development/tools/language-servers/ansible-language-server/default.nix index 5b0ba5bfca201..a4e7590ccd262 100644 --- a/pkgs/development/tools/language-servers/ansible-language-server/default.nix +++ b/pkgs/development/tools/language-servers/ansible-language-server/default.nix @@ -6,16 +6,16 @@ buildNpmPackage rec { pname = "ansible-language-server"; - version = "1.0.4"; + version = "1.0.5"; src = fetchFromGitHub { owner = "ansible"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-IBySScjfF2bIbiOv09uLMt9QH07zegm/W1vmGhdWxGY="; + hash = "sha256-OpYxG6rSPCu2jWyOU1+Dt4LM/3pZKaQyJE8emykh2K4="; }; - npmDepsHash = "sha256-rJ1O2OsrJhTIfywK9/MRubwwcCmMbu61T4zyayg+mAU="; + npmDepsHash = "sha256-pK8Kn4w3QFcfjm0F1bEK9La36wTbmuGzkKMeBIc/9eo="; npmBuildScript = "compile"; # We remove/ignore the prepare and prepack scripts because they run the diff --git a/pkgs/development/tools/language-servers/dot-language-server/default.nix b/pkgs/development/tools/language-servers/dot-language-server/default.nix index ef42edeec9d9c..d269b63ecf819 100644 --- a/pkgs/development/tools/language-servers/dot-language-server/default.nix +++ b/pkgs/development/tools/language-servers/dot-language-server/default.nix @@ -2,16 +2,16 @@ buildNpmPackage rec { pname = "dot-language-server"; - version = "1.1.27"; + version = "1.2.1"; src = fetchFromGitHub { owner = "nikeee"; repo = "dot-language-server"; rev = "v${version}"; - hash = "sha256-Dha6S+qc9rwPvxUkBXYUomyKckEcqp/ESU/24GkrmpA="; + hash = "sha256-NGkobMZrvWlW/jteFowZgGUVQiNm3bS5gv5tN2485VA="; }; - npmDepsHash = "sha256-nI8xPCTZNqeGW4I99cDTxtVLicF1MEIMTPRp7O0bFE4="; + npmDepsHash = "sha256-spskj0vqfR9GoQeKyfLsQgRp6JasZeVLCVBt6wZiSP8="; npmBuildScript = "compile"; diff --git a/pkgs/development/tools/language-servers/gopls/default.nix b/pkgs/development/tools/language-servers/gopls/default.nix index ca0a0b5638fe9..7646f0d807829 100644 --- a/pkgs/development/tools/language-servers/gopls/default.nix +++ b/pkgs/development/tools/language-servers/gopls/default.nix @@ -2,17 +2,17 @@ buildGoModule rec { pname = "gopls"; - version = "0.11.0"; + version = "0.12.2"; src = fetchFromGitHub { owner = "golang"; repo = "tools"; rev = "gopls/v${version}"; - sha256 = "sha256-49TDAxFx4kSwCn1YGQgMn3xLG3RHCCttMzqUfm4OPtE="; + sha256 = "sha256-mbJ9CzJxhAxYByfNpNux/zOWBGaiH4fvIRIh+BMprMk="; }; modRoot = "gopls"; - vendorSha256 = "sha256-1/stMvxsCs2OPMN7KGbZ61s2qGT5Yg7kHVHsWi6ekcY="; + vendorSha256 = "sha256-Wx0tXrw3Y3Of3aZNYiD9EVYKFpqA3kqe5tFqppoe0A0="; doCheck = false; diff --git a/pkgs/development/tools/language-servers/metals/default.nix b/pkgs/development/tools/language-servers/metals/default.nix index f0c1e92fe0ece..20a14a0951674 100644 --- a/pkgs/development/tools/language-servers/metals/default.nix +++ b/pkgs/development/tools/language-servers/metals/default.nix @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { -r bintray:scalacenter/releases \ -r sonatype:snapshots > deps mkdir -p $out/share/java - cp -n $(< deps) $out/share/java/ + cp $(< deps) $out/share/java/ ''; outputHashMode = "recursive"; outputHashAlgo = "sha256"; diff --git a/pkgs/development/tools/language-servers/millet/Cargo.lock b/pkgs/development/tools/language-servers/millet/Cargo.lock index 69520391f8885..b279fbe48d84a 100644 --- a/pkgs/development/tools/language-servers/millet/Cargo.lock +++ b/pkgs/development/tools/language-servers/millet/Cargo.lock @@ -28,7 +28,7 @@ dependencies = [ [[package]] name = "analysis" -version = "0.9.8" +version = "0.10.1" dependencies = [ "config", "diagnostic", @@ -44,6 +44,7 @@ dependencies = [ "sml-namespace", "sml-statics", "sml-statics-types", + "sml-symbol-kind", "sml-syntax", "str-util", "text-pos", @@ -107,7 +108,7 @@ checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" [[package]] name = "chain-map" -version = "0.9.8" +version = "0.10.1" dependencies = [ "fast-hash", "str-util", @@ -120,7 +121,7 @@ source = "git+https://github.com/azdavis/language-util.git#13b015c6a11357b2b9a7e [[package]] name = "cm-syntax" -version = "0.9.8" +version = "0.10.1" dependencies = [ "lex-util", "paths", @@ -138,8 +139,18 @@ dependencies = [ ] [[package]] +name = "codespan-reporting" +version = "0.11.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "3538270d33cc669650c4b093848450d380def10c331d38c768e34cac80576e6e" +dependencies = [ + "termcolor", + "unicode-width", +] + +[[package]] name = "config" -version = "0.9.8" +version = "0.10.1" dependencies = [ "fast-hash", "serde", @@ -384,7 +395,7 @@ dependencies = [ [[package]] name = "input" -version = "0.9.8" +version = "0.10.1" dependencies = [ "cm-syntax", "config", @@ -443,7 +454,7 @@ checksum = "1dabfe0d01e15fde0eba33b9de62475c59e681a47ce4ffe0534af2577a3f8524" [[package]] name = "lang-srv" -version = "0.9.8" +version = "0.10.1" dependencies = [ "analysis", "anyhow", @@ -471,7 +482,7 @@ checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646" [[package]] name = "lex-util" -version = "0.9.8" +version = "0.10.1" [[package]] name = "libc" @@ -546,9 +557,10 @@ dependencies = [ [[package]] name = "millet-cli" -version = "0.9.8" +version = "0.10.1" dependencies = [ "analysis", + "codespan-reporting", "config", "diagnostic", "env_logger", @@ -557,11 +569,13 @@ dependencies = [ "paths", "pico-args", "sml-naive-fmt", + "text-pos", + "text-size-util", ] [[package]] name = "millet-ls" -version = "0.9.8" +version = "0.10.1" dependencies = [ "anyhow", "env_logger", @@ -590,7 +604,7 @@ dependencies = [ [[package]] name = "mlb-hir" -version = "0.9.8" +version = "0.10.1" dependencies = [ "fast-hash", "paths", @@ -601,7 +615,7 @@ dependencies = [ [[package]] name = "mlb-statics" -version = "0.9.8" +version = "0.10.1" dependencies = [ "config", "diagnostic", @@ -625,7 +639,7 @@ dependencies = [ [[package]] name = "mlb-syntax" -version = "0.9.8" +version = "0.10.1" dependencies = [ "lex-util", "paths", @@ -697,7 +711,7 @@ dependencies = [ [[package]] name = "panic-hook" -version = "0.9.8" +version = "0.10.1" dependencies = [ "better-panic", ] @@ -891,7 +905,7 @@ dependencies = [ [[package]] name = "slash-var-path" -version = "0.9.8" +version = "0.10.1" dependencies = [ "fast-hash", "str-util", @@ -899,14 +913,14 @@ dependencies = [ [[package]] name = "sml-comment" -version = "0.9.8" +version = "0.10.1" dependencies = [ "sml-syntax", ] [[package]] name = "sml-dynamics" -version = "0.9.8" +version = "0.10.1" dependencies = [ "fast-hash", "fmt-util", @@ -917,7 +931,7 @@ dependencies = [ [[package]] name = "sml-dynamics-tests" -version = "0.9.8" +version = "0.10.1" dependencies = [ "config", "sml-dynamics", @@ -932,7 +946,7 @@ dependencies = [ [[package]] name = "sml-file-syntax" -version = "0.9.8" +version = "0.10.1" dependencies = [ "config", "elapsed", @@ -946,7 +960,7 @@ dependencies = [ [[package]] name = "sml-fixity" -version = "0.9.8" +version = "0.10.1" dependencies = [ "fast-hash", "once_cell", @@ -955,7 +969,7 @@ dependencies = [ [[package]] name = "sml-hir" -version = "0.9.8" +version = "0.10.1" dependencies = [ "la-arena", "sml-lab", @@ -966,7 +980,7 @@ dependencies = [ [[package]] name = "sml-hir-lower" -version = "0.9.8" +version = "0.10.1" dependencies = [ "config", "diagnostic", @@ -980,14 +994,14 @@ dependencies = [ [[package]] name = "sml-lab" -version = "0.9.8" +version = "0.10.1" dependencies = [ "str-util", ] [[package]] name = "sml-lex" -version = "0.9.8" +version = "0.10.1" dependencies = [ "diagnostic", "lex-util", @@ -1001,7 +1015,7 @@ source = "git+https://github.com/azdavis/sml-libs.git#7ae671a607a143fd8529e34019 [[package]] name = "sml-naive-fmt" -version = "0.9.8" +version = "0.10.1" dependencies = [ "fast-hash", "sml-comment", @@ -1010,11 +1024,11 @@ dependencies = [ [[package]] name = "sml-namespace" -version = "0.9.8" +version = "0.10.1" [[package]] name = "sml-parse" -version = "0.9.8" +version = "0.10.1" dependencies = [ "diagnostic", "event-parse", @@ -1026,14 +1040,14 @@ dependencies = [ [[package]] name = "sml-path" -version = "0.9.8" +version = "0.10.1" dependencies = [ "str-util", ] [[package]] name = "sml-scon" -version = "0.9.8" +version = "0.10.1" dependencies = [ "num-bigint", "num-traits", @@ -1042,7 +1056,7 @@ dependencies = [ [[package]] name = "sml-statics" -version = "0.9.8" +version = "0.10.1" dependencies = [ "chain-map", "config", @@ -1057,13 +1071,14 @@ dependencies = [ "sml-namespace", "sml-path", "sml-statics-types", + "sml-symbol-kind", "str-util", "uniq", ] [[package]] name = "sml-statics-types" -version = "0.9.8" +version = "0.10.1" dependencies = [ "chain-map", "code-h2-md-map", @@ -1079,8 +1094,16 @@ dependencies = [ ] [[package]] +name = "sml-symbol-kind" +version = "0.10.1" +dependencies = [ + "sml-namespace", + "sml-statics-types", +] + +[[package]] name = "sml-syntax" -version = "0.9.8" +version = "0.10.1" dependencies = [ "char-name", "code-h2-md-map", @@ -1093,7 +1116,7 @@ dependencies = [ [[package]] name = "sml-ty-var-scope" -version = "0.9.8" +version = "0.10.1" dependencies = [ "fast-hash", "sml-hir", @@ -1161,7 +1184,7 @@ dependencies = [ [[package]] name = "tests" -version = "0.9.8" +version = "0.10.1" dependencies = [ "analysis", "cm-syntax", @@ -1495,7 +1518,7 @@ dependencies = [ [[package]] name = "xtask" -version = "0.9.8" +version = "0.10.1" dependencies = [ "anyhow", "flate2", diff --git a/pkgs/development/tools/language-servers/millet/default.nix b/pkgs/development/tools/language-servers/millet/default.nix index 931367e2c9eda..f3942867b731d 100644 --- a/pkgs/development/tools/language-servers/millet/default.nix +++ b/pkgs/development/tools/language-servers/millet/default.nix @@ -2,13 +2,13 @@ rustPlatform.buildRustPackage rec { pname = "millet"; - version = "0.9.8"; + version = "0.10.1"; src = fetchFromGitHub { owner = "azdavis"; repo = pname; rev = "v${version}"; - hash = "sha256-04XP5Mw41KRCB1n1iqSxBXXCiVLO8UN05SoaVqMnwjU="; + hash = "sha256-f5vftRc/hI0erXZiU+0HbNHPqNUUz6Df2+uIGsRu2+M="; }; cargoLock = { diff --git a/pkgs/development/tools/language-servers/pylyzer/default.nix b/pkgs/development/tools/language-servers/pylyzer/default.nix index 4e03a6bfc617a..2a4fbe1b7ff5a 100644 --- a/pkgs/development/tools/language-servers/pylyzer/default.nix +++ b/pkgs/development/tools/language-servers/pylyzer/default.nix @@ -11,16 +11,16 @@ rustPlatform.buildRustPackage rec { pname = "pylyzer"; - version = "0.0.29"; + version = "0.0.31"; src = fetchFromGitHub { owner = "mtshiba"; repo = "pylyzer"; rev = "v${version}"; - hash = "sha256-9oZAkbA/KCP0fIzsC91xTrEnqiID1knxvY7Y2syfK+o="; + hash = "sha256-1sUsCZFm61XYFguohLA3NzYa2tX21lc3wYiFkg1y0/o="; }; - cargoHash = "sha256-MRoCPoxv8mhoxty04f5aLVgb0U4WEmkRWZmCOy9zTf0="; + cargoHash = "sha256-pQnRFGAeVVGKRBfpbQXCGBHxkXBYei7nOxYKg3hPJ1k="; nativeBuildInputs = [ git diff --git a/pkgs/development/tools/lightningcss/default.nix b/pkgs/development/tools/lightningcss/default.nix index 132faaa4aeeee..4a5b040ab990b 100644 --- a/pkgs/development/tools/lightningcss/default.nix +++ b/pkgs/development/tools/lightningcss/default.nix @@ -6,16 +6,16 @@ rustPlatform.buildRustPackage rec { pname = "lightningcss"; - version = "1.19.0"; + version = "1.20.0"; src = fetchFromGitHub { owner = "parcel-bundler"; repo = "lightningcss"; rev = "refs/tags/v${version}"; - sha256 = "sha256-ncZ1tof8InP+8KLTQ2YOwaD/liwU1LNZkllBm53VYNo="; + sha256 = "zy1kV53ZvgMbQL5skBCmqRezooyzvv90YAIAkLmuMKc="; }; - cargoHash = "sha256-xxR80iizEej1vAzItaoqQnJDZ62dxPOeEdaUpgqhG7I="; + cargoHash = "sha256-QL7O84Y6yaHL4UEbnfL8jLXH/Q6Ba4RC1NLq40Y3XDk="; buildFeatures = [ "cli" diff --git a/pkgs/development/tools/loganalyzer/default.nix b/pkgs/development/tools/loganalyzer/default.nix new file mode 100644 index 0000000000000..d8368df1e44c6 --- /dev/null +++ b/pkgs/development/tools/loganalyzer/default.nix @@ -0,0 +1,56 @@ +{ lib +, stdenv +, fetchFromGitHub +, qtbase +, qtsvg +, wrapQtAppsHook +}: + +stdenv.mkDerivation rec { + pname = "loganalyzer"; + version = "23.5.1"; + + src = fetchFromGitHub { + owner = "pbek"; + repo = "loganalyzer"; + rev = "v${version}"; + fetchSubmodules = true; + hash = "sha256-k9hOGI/TmiftwhSHQEh3ZVV8kkMSs1yKejqHelFSQJ4="; + }; + + buildInputs = [ + qtbase + qtsvg + ]; + + nativeBuildInputs = [ + wrapQtAppsHook + ]; + + sourceRoot = "source/src"; + + buildPhase = '' + runHook preBuild + + qmake LogAnalyzer.pro CONFIG+=release PREFIX=/ + make + + runHook postBuild + ''; + + installFlags = [ "INSTALL_ROOT=$(out)" ]; + + postInstall = '' + ln -s $out/bin/LogAnalyzer $out/bin/loganalyzer + ''; + + meta = with lib; { + description = "Tool that helps you to analyze your log files by reducing the content with patterns you define"; + homepage = "https://github.com/pbek/loganalyzer"; + changelog = "https://github.com/pbek/loganalyzer/blob/develop/CHANGELOG.md"; + downloadPage = "https://github.com/pbek/loganalyzer/releases/tag/v${version}"; + license = licenses.gpl2Only; + maintainers = with maintainers; [ pbek ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/development/tools/mani/default.nix b/pkgs/development/tools/mani/default.nix index 66fbb4dc7311f..06c7bcc842148 100644 --- a/pkgs/development/tools/mani/default.nix +++ b/pkgs/development/tools/mani/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "mani"; - version = "0.23.0"; + version = "0.24.0"; src = fetchFromGitHub { owner = "alajmo"; repo = "mani"; rev = "v${version}"; - sha256 = "sha256-PuoGuweuDcSM1qfjXABSdoqbMLc5a+lYGFr0kZZkgVE="; + sha256 = "sha256-ROFqeRa43qDjO+xwC68gJJqLeLSRiX+L/gf2o8kURaI="; }; - vendorHash = "sha256-9DP6SRcvHtZhkk2XoYesC1mhfq06KsLs0X02AG9vwJ8="; + vendorHash = "sha256-mFan09oJ+BPVJHAxoROj282WJ+4e7TD0ZqeQH1kDabQ="; nativeBuildInputs = [ installShellFiles makeWrapper ]; diff --git a/pkgs/development/tools/minizinc/default.nix b/pkgs/development/tools/minizinc/default.nix index a0fb567385072..40bc816e31443 100644 --- a/pkgs/development/tools/minizinc/default.nix +++ b/pkgs/development/tools/minizinc/default.nix @@ -1,21 +1,37 @@ -{ lib, stdenv, fetchFromGitHub, cmake, flex, bison }: -stdenv.mkDerivation rec { +{ lib, stdenv, fetchFromGitHub, callPackage, jq, cmake, flex, bison, gecode, mpfr, cbc, zlib }: + +stdenv.mkDerivation (finalAttrs: { pname = "minizinc"; version = "2.7.4"; - nativeBuildInputs = [ cmake flex bison ]; - src = fetchFromGitHub { owner = "MiniZinc"; repo = "libminizinc"; - rev = version; + rev = finalAttrs.version; sha256 = "sha256-Zq5gAwe9IQmknSDilFyHhSk5ZCQ8EfBOiM6Oef2WxYg="; }; + nativeBuildInputs = [ bison cmake flex jq ]; + + buildInputs = [ gecode mpfr cbc zlib ]; + + postInstall = '' + mkdir -p $out/share/minizinc/solvers/ + jq \ + '.version = "${gecode.version}" + | .mznlib = "${gecode}/share/gecode/mznlib" + | .executable = "${gecode}/bin/fzn-gecode"' \ + ${./gecode.msc} \ + >$out/share/minizinc/solvers/gecode.msc + ''; + + passthru.tests = { + simple = callPackage ./simple-test { }; + }; + meta = with lib; { homepage = "https://www.minizinc.org/"; description = "A medium-level constraint modelling language"; - longDescription = '' MiniZinc is a medium-level constraint modelling language. It is high-level enough to express most @@ -23,9 +39,8 @@ stdenv.mkDerivation rec { that it can be mapped onto existing solvers easily and consistently. It is a subset of the higher-level language Zinc. ''; - license = licenses.mpl20; platforms = platforms.unix; maintainers = [ maintainers.sheenobu ]; }; -} +}) diff --git a/pkgs/development/tools/minizinc/gecode.msc b/pkgs/development/tools/minizinc/gecode.msc new file mode 100644 index 0000000000000..fc0b4a2046895 --- /dev/null +++ b/pkgs/development/tools/minizinc/gecode.msc @@ -0,0 +1,16 @@ +{ + "id": "org.gecode.gecode", + "name": "Gecode", + "description": "Gecode FlatZinc executable", + "version": "VERSION-WILL-BE-REPLACED-BY-JQ", + "mznlib": "MZNLIB-WILL-BE-REPLACED-BY-JQ", + "executable": "FZN_GECODE-WILL-BE-REPLACED-BY-JQ", + "tags": ["cp","int", "float", "set", "restart"], + "stdFlags": ["-a","-f","-n","-p","-r","-s","-t"], + "supportsMzn": false, + "supportsFzn": true, + "needsSolns2Out": true, + "needsMznExecutable": false, + "needsStdlibDir": false, + "isGUIApplication": false +} diff --git a/pkgs/development/tools/minizinc/ide.nix b/pkgs/development/tools/minizinc/ide.nix index 8c2756f801eef..f89f067d20385 100644 --- a/pkgs/development/tools/minizinc/ide.nix +++ b/pkgs/development/tools/minizinc/ide.nix @@ -1,11 +1,9 @@ { lib, mkDerivation, fetchFromGitHub, qtbase, qtwebengine, qtwebkit, qmake, minizinc }: + mkDerivation rec { pname = "minizinc-ide"; version = "2.5.5"; - nativeBuildInputs = [ qmake ]; - buildInputs = [ qtbase qtwebengine qtwebkit ]; - src = fetchFromGitHub { owner = "MiniZinc"; repo = "MiniZincIDE"; @@ -14,6 +12,9 @@ mkDerivation rec { fetchSubmodules = true; }; + nativeBuildInputs = [ qmake ]; + buildInputs = [ qtbase qtwebengine qtwebkit ]; + sourceRoot = "source/MiniZincIDE"; dontWrapQtApps = true; @@ -25,7 +26,6 @@ mkDerivation rec { meta = with lib; { homepage = "https://www.minizinc.org/"; description = "IDE for MiniZinc, a medium-level constraint modelling language"; - longDescription = '' MiniZinc is a medium-level constraint modelling language. It is high-level enough to express most @@ -33,7 +33,6 @@ mkDerivation rec { that it can be mapped onto existing solvers easily and consistently. It is a subset of the higher-level language Zinc. ''; - license = licenses.mpl20; platforms = platforms.linux; maintainers = [ maintainers.dtzWill ]; diff --git a/pkgs/development/tools/minizinc/simple-test/aust.mzn b/pkgs/development/tools/minizinc/simple-test/aust.mzn new file mode 100644 index 0000000000000..73d6dbfb7daae --- /dev/null +++ b/pkgs/development/tools/minizinc/simple-test/aust.mzn @@ -0,0 +1,20 @@ +% Taken from https://www.minizinc.org/doc-2.7.3/en/modelling.html +int: nc = 3; + +var 1..nc: wa; var 1..nc: nt; var 1..nc: sa; var 1..nc: q; +var 1..nc: nsw; var 1..nc: v; var 1..nc: t; + +constraint wa != nt; +constraint wa != sa; +constraint nt != sa; +constraint nt != q; +constraint sa != q; +constraint sa != nsw; +constraint sa != v; +constraint q != nsw; +constraint nsw != v; +solve satisfy; + +output ["wa=\(wa)\t nt=\(nt)\t sa=\(sa)\n", + "q=\(q)\t nsw=\(nsw)\t v=\(v)\n", + "t=", show(t), "\n"]; diff --git a/pkgs/development/tools/minizinc/simple-test/default.nix b/pkgs/development/tools/minizinc/simple-test/default.nix new file mode 100644 index 0000000000000..ee813e09cf00a --- /dev/null +++ b/pkgs/development/tools/minizinc/simple-test/default.nix @@ -0,0 +1,21 @@ +# These tests show that the minizinc build is capable of running the +# examples in the official tutorial: +# https://www.minizinc.org/doc-2.7.3/en/modelling.html + +{ stdenv, minizinc }: + +stdenv.mkDerivation { + name = "minizinc-simple-test"; + + nativeBuildInputs = [ minizinc ]; + + dontInstall = true; + + buildCommand = '' + minizinc --solver gecode ${./aust.mzn} + minizinc --solver cbc ${./loan.mzn} ${./loan1.dzn} + touch $out + ''; + + meta.timeout = 10; +} diff --git a/pkgs/development/tools/minizinc/simple-test/loan.mzn b/pkgs/development/tools/minizinc/simple-test/loan.mzn new file mode 100644 index 0000000000000..b3c1b735847ee --- /dev/null +++ b/pkgs/development/tools/minizinc/simple-test/loan.mzn @@ -0,0 +1,24 @@ +% Taken from https://www.minizinc.org/doc-2.7.3/en/modelling.html +% variables +var float: R; % quarterly repayment +var float: P; % principal initially borrowed +var 0.0 .. 10.0: I; % interest rate (per quarter) + +% intermediate variables +var float: B1; % balance after one quarter +var float: B2; % balance after two quarters +var float: B3; % balance after three quarters +var float: B4; % balance owing at end + +constraint B1 = P * (1.0 + I) - R; +constraint B2 = B1 * (1.0 + I) - R; +constraint B3 = B2 * (1.0 + I) - R; +constraint B4 = B3 * (1.0 + I) - R; + +solve satisfy; + +output [ + "Borrowing ", show_float(0, 2, P), " at ", show(I*100.0), + "% interest, and repaying ", show_float(0, 2, R), + "\nper quarter for 1 year leaves ", show_float(0, 2, B4), " owing\n" +]; diff --git a/pkgs/development/tools/minizinc/simple-test/loan1.dzn b/pkgs/development/tools/minizinc/simple-test/loan1.dzn new file mode 100644 index 0000000000000..d5fd9dad2e957 --- /dev/null +++ b/pkgs/development/tools/minizinc/simple-test/loan1.dzn @@ -0,0 +1,3 @@ +I = 0.04; +P = 1000.0; +R = 260.0; diff --git a/pkgs/development/tools/misc/act/default.nix b/pkgs/development/tools/misc/act/default.nix index e395645c9bcee..932c6892d0853 100644 --- a/pkgs/development/tools/misc/act/default.nix +++ b/pkgs/development/tools/misc/act/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "act"; - version = "0.2.45"; + version = "0.2.46"; src = fetchFromGitHub { owner = "nektos"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-mp5+hDSZsp46WMCCqVoorKSHeoQY/+ORtj0fNrKsFWI="; + hash = "sha256-74ap3UgAFrt/ZrSMECdL3Mu26/53VWUEAUnqHw3oJDU="; }; - vendorHash = "sha256-37fHVy4NLhWyk1yD9zSNnZoVVyd2QizzDCDbiNJCBlc="; + vendorHash = "sha256-OYBFaosO1PKoN236pMFauC0ensnoFDlmAKVWd9OwLHU="; doCheck = false; diff --git a/pkgs/development/tools/misc/arcanist/default.nix b/pkgs/development/tools/misc/arcanist/default.nix index 178bb9b3d0592..06c0f700ffe8c 100644 --- a/pkgs/development/tools/misc/arcanist/default.nix +++ b/pkgs/development/tools/misc/arcanist/default.nix @@ -25,13 +25,13 @@ let makeArcWrapper = toolset: '' in stdenv.mkDerivation { pname = "arcanist"; - version = "20220517"; + version = "20230530"; src = fetchFromGitHub { owner = "phacility"; repo = "arcanist"; - rev = "85c953ebe4a6fef332158fd757d97c5a58682d3a"; - sha256 = "0x847fw74mzrbhzpgc4iqgvs6dsf4svwfa707dsbxi78fn2lxbl7"; + rev = "e50d1bc4eabac9c37e3220e9f3fb8e37ae20b957"; + hash = "sha256-u+HRsaCuAAyLrEihrZtLrdZ6NTVjPshieJATK3t5Fo4="; }; patches = [ @@ -80,7 +80,7 @@ stdenv.mkDerivation { meta = { description = "Command line interface to Phabricator"; - homepage = "http://phabricator.org"; + homepage = "https://www.phacility.com/"; license = lib.licenses.asl20; platforms = lib.platforms.unix; maintainers = [ lib.maintainers.thoughtpolice ]; diff --git a/pkgs/development/tools/misc/binutils/CVE-2023-1972.patch b/pkgs/development/tools/misc/binutils/CVE-2023-1972.patch new file mode 100644 index 0000000000000..838fbf7227619 --- /dev/null +++ b/pkgs/development/tools/misc/binutils/CVE-2023-1972.patch @@ -0,0 +1,23 @@ +diff --git a/bfd/elf.c b/bfd/elf.c +index 027d0143735..185028cbd97 100644 +--- a/bfd/elf.c ++++ b/bfd/elf.c +@@ -9030,6 +9030,9 @@ _bfd_elf_slurp_version_tables (bfd *abfd, bool default_imported_symver) + bfd_set_error (bfd_error_file_too_big); + goto error_return_verdef; + } ++ ++ if (amt == 0) ++ goto error_return_verdef; + elf_tdata (abfd)->verdef = (Elf_Internal_Verdef *) bfd_zalloc (abfd, amt); + if (elf_tdata (abfd)->verdef == NULL) + goto error_return_verdef; +@@ -9133,6 +9136,8 @@ _bfd_elf_slurp_version_tables (bfd *abfd, bool default_imported_symver) + bfd_set_error (bfd_error_file_too_big); + goto error_return; + } ++ if (amt == 0) ++ goto error_return; + elf_tdata (abfd)->verdef = (Elf_Internal_Verdef *) bfd_zalloc (abfd, amt); + if (elf_tdata (abfd)->verdef == NULL) + goto error_return; diff --git a/pkgs/development/tools/misc/binutils/default.nix b/pkgs/development/tools/misc/binutils/default.nix index 0db491f225c19..0a2610ffd2e71 100644 --- a/pkgs/development/tools/misc/binutils/default.nix +++ b/pkgs/development/tools/misc/binutils/default.nix @@ -88,6 +88,10 @@ stdenv.mkDerivation (finalAttrs: { # not need to know binutils' BINDIR at all. It's an absolute path # where libraries are stored. ./plugins-no-BINDIR.patch + + # CVE-2023-1972 fix to bfd/elf.c from: + # https://sourceware.org/git/?p=binutils-gdb.git;a=commit;h=c22d38baefc5a7a1e1f5cdc9dbb556b1f0ec5c57 + ./CVE-2023-1972.patch ] ++ lib.optional targetPlatform.isiOS ./support-ios.patch # Adds AVR-specific options to "size" for compatibility with Atmel's downstream distribution diff --git a/pkgs/development/tools/misc/blackfire/default.nix b/pkgs/development/tools/misc/blackfire/default.nix index d4877d530e35d..52f406c11e162 100644 --- a/pkgs/development/tools/misc/blackfire/default.nix +++ b/pkgs/development/tools/misc/blackfire/default.nix @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { pname = "blackfire"; - version = "2.15.0"; + version = "2.16.1"; src = passthru.sources.${stdenv.hostPlatform.system} or (throw "Unsupported platform for blackfire: ${stdenv.hostPlatform.system}"); @@ -57,23 +57,23 @@ stdenv.mkDerivation rec { sources = { "x86_64-linux" = fetchurl { url = "https://packages.blackfire.io/debian/pool/any/main/b/blackfire/blackfire_${version}_amd64.deb"; - sha256 = "eKHP7yOy6hnHi0EomZhsGXWinNy4roQ9qRGn8tah6KI="; + sha256 = "G+uiPCt7AJQsxkY2Snc2941nkyo9NY3wv3uNCAFfSmE="; }; "i686-linux" = fetchurl { url = "https://packages.blackfire.io/debian/pool/any/main/b/blackfire/blackfire_${version}_i386.deb"; - sha256 = "sCFVmGz850h9NKoVKUBV+93k913ihpfk+48buzsNOqw="; + sha256 = "F2uRmxe8fAPAN/z7T7Kr0h4zcVS4I9mg6nqNXmcwxpE="; }; "aarch64-linux" = fetchurl { url = "https://packages.blackfire.io/debian/pool/any/main/b/blackfire/blackfire_${version}_arm64.deb"; - sha256 = "V6adZVR82Z15fN//wuwHZK6C95hAxXPB9NuA0kx1qPA="; + sha256 = "0MJDqRU+2phJ9P/c8GpB+btde0rSkR1gPx8Jbc4gIGo="; }; "aarch64-darwin" = fetchurl { url = "https://packages.blackfire.io/blackfire/${version}/blackfire-darwin_arm64.pkg.tar.gz"; - sha256 = "X0sWPjmVAzJTKHUxVLbhWTdc7ryn2GkNMj9CuRgTb0I="; + sha256 = "j6EfHRIN81uyro0QlzAjRSl3BLzObqI1EVuT9WaACu0="; }; "x86_64-darwin" = fetchurl { url = "https://packages.blackfire.io/blackfire/${version}/blackfire-darwin_amd64.pkg.tar.gz"; - sha256 = "FvoslunTPxmc2KqaxNSb0uK9fP4CV5HR39UDoW3zJfw="; + sha256 = "n02ABC8HzmQXWpgmXgCNBNFl1xw/kW/ncTNIeoJCUB0="; }; }; diff --git a/pkgs/development/tools/misc/blackfire/php-probe.nix b/pkgs/development/tools/misc/blackfire/php-probe.nix index bda782c1ae52d..f806c83245398 100644 --- a/pkgs/development/tools/misc/blackfire/php-probe.nix +++ b/pkgs/development/tools/misc/blackfire/php-probe.nix @@ -13,47 +13,47 @@ let phpMajor = lib.versions.majorMinor php.version; - version = "1.86.8"; + version = "1.87.2"; hashes = { "x86_64-linux" = { system = "amd64"; sha256 = { - "8.0" = "zoT9f906lvMTyq+w7BAqwA3Wnadk0hEsc9KLYuffE8c="; - "8.1" = "KJB3/BlS8FCDg3CEaYf14RJk3xhda1K2XEPVylSRFTQ="; - "8.2" = "PrhPtYUkz+Zs4ctIJUsHlUqLHZDfXNMc7s6uA5RJNVI="; + "8.0" = "ylzxQlyk6jpyO9Zcqv/uUiRWcMSkPKFBgiCDnyU8lWI="; + "8.1" = "FEb0NBJpwoYaNdEHEn4TkSQR7VShGpHptaDIRKwrmkQ="; + "8.2" = "itB0Zm1Mog18F8vIHn9AZMYMzafLQR0v5zcOgqy1ouI="; }; }; "i686-linux" = { system = "i386"; sha256 = { - "8.0" = "IByOPOvzJZOR9hw6Ngn81XtXBczRPLswDA4Mvh8dQdQ="; - "8.1" = "Mob30xhKWaREiqw3cjlrz0jtAc9onERT6NxTz9bUSSY="; - "8.2" = "a7paFrgLfMLvcQRcHPi+sJ61XTjphcba+tewrJw0OnE="; + "8.0" = "DL5wiaez4tzrn8xY+ptYiCvZ1HWaStT9vGWPd5whTaE="; + "8.1" = "0bX2frll0ne6H6o7HNH4TRV2D+NDe11mVvqwhvSDg9E="; + "8.2" = "U6zmbEkRr3+9yVwUgQ1+SBNK0zWD92S2KBOHJ1gMmjM="; }; }; "aarch64-linux" = { system = "arm64"; sha256 = { - "8.0" = "6ZhFRjjj/y3yyH2PXVnw+Mhkm2trfpysxfXocH5nx48="; - "8.1" = "x2TGaehSJmgJJcapr6xBO9Svo1HE66eVRHt/Ab+RSzQ="; - "8.2" = "YUs8h/DBwaNvmYA9TS7l0skg+X4yBzcHbPH4QXeSdCI="; + "8.0" = "R6zdOw/K+/YPYzSEOEyz83hqiLHCM4EOjz2tLrJOPlE="; + "8.1" = "agLQVI3u7ENcWLDRx7YSEBZobRnwEaKAmFpIU5AXhqo="; + "8.2" = "Y2bUYaymoZ/Ct5a7K+5U+zNh9ZKUaq0Oal/v04nzuaU="; }; }; "aarch64-darwin" = { system = "arm64"; sha256 = { - "8.0" = "HZV7I8HOWvGwV9kMuSBW1/vgs+plxYLvbVs/d8aNNfE="; - "8.1" = "PsHDB/P/vbdpqbLl12UqelHfvHHt2WxiWEUCV7s5ZJg="; - "8.2" = "pEkFLhjWOLquBcxE06Gv7HUB/lPU8cPajhsFc0kcKlA="; + "8.0" = "XcFU1lq694aLIn1HQdDSg2Zx68/fLew3GjkTLsxHYvk="; + "8.1" = "ovTtwXPut9jCvxVyd5mQzrfJPCy+rQvUi4c74NrBzY4="; + "8.2" = "8hybE62l8vSwbqpcrnj/lI2Wjy8R3wuO04zwofLi9EY="; }; }; "x86_64-darwin" = { system = "amd64"; sha256 = { - "8.0" = "VOi901nkVNjHSk02HNk6/z9q3avs+doHWL+Zxxruc6k="; - "8.1" = "TVV9Iysueo1M2WaaX6CF52WzMfJJ96gOIxuy1mIA6ao="; - "8.2" = "XOcjZes3JNfulJimdCTkipiRzrJ/237SSfqNAelVPNU="; + "8.0" = "F4mIvjyf3Zi3icKcPe6KP2gR9jeC7EJskw9TfsTHz6Y="; + "8.1" = "WsHH/XJboHeRhxpYY0WtXEJwOsGNFtfexBShC/J7GaQ="; + "8.2" = "w3Vu7CTFebn59i1FYVCYHiOadTIPlPCkQ1QHEfvHWig="; }; }; }; diff --git a/pkgs/development/tools/misc/dart-sass/default.nix b/pkgs/development/tools/misc/dart-sass/default.nix index b8cc7265fb08f..d5af4ac95ede1 100644 --- a/pkgs/development/tools/misc/dart-sass/default.nix +++ b/pkgs/development/tools/misc/dart-sass/default.nix @@ -17,7 +17,7 @@ buildDartApplication rec { pubspecLockFile = ./pubspec.lock; vendorHash = "sha256-Atm7zfnDambN/BmmUf4BG0yUz/y6xWzf0reDw3Ad41s="; - dartCompileFlags = "--define=version=${version}"; + dartCompileFlags = [ "--define=version=${version}" ]; meta = with lib; { homepage = "https://github.com/sass/dart-sass"; diff --git a/pkgs/development/tools/misc/gperf/default.nix b/pkgs/development/tools/misc/gperf/default.nix index d836e5a973aef..c6b6e89495c0a 100644 --- a/pkgs/development/tools/misc/gperf/default.nix +++ b/pkgs/development/tools/misc/gperf/default.nix @@ -9,6 +9,11 @@ stdenv.mkDerivation rec { sha256 = "1qispg6i508rq8pkajh26cznwimbnj06wq9sd85vg95v8nwld1aq"; }; + patches = [ + # Clang 16 defaults to C++17, which does not allow `register` as a storage class specifier. + ./gperf-c++17-register-fix.patch + ]; + enableParallelBuilding = true; meta = { diff --git a/pkgs/development/tools/misc/gperf/gperf-c++17-register-fix.patch b/pkgs/development/tools/misc/gperf/gperf-c++17-register-fix.patch new file mode 100644 index 0000000000000..bb8c414a1a26c --- /dev/null +++ b/pkgs/development/tools/misc/gperf/gperf-c++17-register-fix.patch @@ -0,0 +1,13 @@ +diff --git a/lib/getline.cc b/lib/getline.cc +index c57c633..0984a7c 100644 +--- a/lib/getline.cc ++++ b/lib/getline.cc +@@ -55,7 +55,7 @@ getstr (char **lineptr, size_t *n, FILE *stream, char terminator, size_t offset) + + for (;;) + { +- register int c = getc (stream); ++ int c = getc (stream); + + /* We always want at least one char left in the buffer, since we + always (unless we get an error while reading the first char) diff --git a/pkgs/development/tools/misc/husky/default.nix b/pkgs/development/tools/misc/husky/default.nix new file mode 100644 index 0000000000000..dd2fef2a60260 --- /dev/null +++ b/pkgs/development/tools/misc/husky/default.nix @@ -0,0 +1,23 @@ +{ lib, buildNpmPackage, fetchFromGitHub }: + +buildNpmPackage rec { + pname = "husky"; + version = "8.0.3"; + + src = fetchFromGitHub { + owner = "typicode"; + repo = "husky"; + rev = "v${version}"; + hash = "sha256-KoF2+vikgFyCGjfKeaqkC720UVMuvCIn9ApDPKbudsA="; + }; + + npmDepsHash = "sha256-u1dndTKvInobva+71yI2vPiwrW9vqzAJ2sDAqT9YJsg="; + + meta = with lib; { + description = "Git hooks made easy 🐶 woof!"; + homepage = "https://github.com/typicode/husky"; + changelog = "https://github.com/typicode/husky/releases/tag/v${version}"; + license = licenses.mit; + maintainers = with maintainers; [ dit7ya ]; + }; +} diff --git a/pkgs/development/tools/misc/namaka/default.nix b/pkgs/development/tools/misc/namaka/default.nix index 885ebf9d497ca..185f24b47211c 100644 --- a/pkgs/development/tools/misc/namaka/default.nix +++ b/pkgs/development/tools/misc/namaka/default.nix @@ -8,16 +8,16 @@ rustPlatform.buildRustPackage rec { pname = "namaka"; - version = "0.1.1"; + version = "0.2.0"; src = fetchFromGitHub { owner = "nix-community"; repo = "namaka"; rev = "v${version}"; - hash = "sha256-ZTMqleCWmuNWhZE375gtF1j1JRkaKEUFN1AM43e7h4Y="; + hash = "sha256-CLGEW11Fo1v4vj0XSqiyW1EbhRZFO7dkgM43eKwItrk="; }; - cargoHash = "sha256-QnEiCWC0awE7CUSpfGJGV7ItXRnP1omodPfKAtXSihY="; + cargoHash = "sha256-exftXTO/NbTfd7gNPpZ886jXH1XveqX+Cl/gXpZlS4c="; nativeBuildInputs = [ installShellFiles diff --git a/pkgs/development/tools/misc/opengrok/default.nix b/pkgs/development/tools/misc/opengrok/default.nix index 8fe08ac6a609c..49b0b6f3b9197 100644 --- a/pkgs/development/tools/misc/opengrok/default.nix +++ b/pkgs/development/tools/misc/opengrok/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { pname = "opengrok"; - version = "1.12.7"; + version = "1.12.9"; # binary distribution src = fetchurl { url = "https://github.com/oracle/opengrok/releases/download/${version}/${pname}-${version}.tar.gz"; - hash = "sha256-4Nq+/yr+MhY4D0yZZSzl3etQEUCGIJjcuaP6ZFGLMpY="; + hash = "sha256-8VyCMFFL85qqnkO66qobB0OzF8DWfpjkc8Jxbp8FtH0="; }; nativeBuildInputs = [ makeWrapper ]; @@ -26,6 +26,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Source code search and cross reference engine"; homepage = "https://opengrok.github.io/OpenGrok/"; + changelog = "https://github.com/oracle/opengrok/releases/tag/${version}"; license = licenses.cddl; maintainers = [ ]; platforms = platforms.all; diff --git a/pkgs/development/tools/misc/pkg-config/default.nix b/pkgs/development/tools/misc/pkg-config/default.nix index d4feca6dfe6e5..b883dab6cc143 100644 --- a/pkgs/development/tools/misc/pkg-config/default.nix +++ b/pkgs/development/tools/misc/pkg-config/default.nix @@ -35,6 +35,9 @@ stdenv.mkDerivation rec { "ac_cv_func_posix_getgrgid_r=yes" ]; + # Silence "incompatible integer to pointer conversion passing 'gsize'" when building with Clang. + env.NIX_CFLAGS_COMPILE = lib.optionalString stdenv.cc.isClang "-Wno-int-conversion"; + enableParallelBuilding = true; doCheck = true; diff --git a/pkgs/development/tools/misc/planus/default.nix b/pkgs/development/tools/misc/planus/default.nix new file mode 100644 index 0000000000000..9074debb26336 --- /dev/null +++ b/pkgs/development/tools/misc/planus/default.nix @@ -0,0 +1,38 @@ +{ lib +, rustPlatform +, fetchCrate +, installShellFiles +, stdenv +}: + +rustPlatform.buildRustPackage rec { + pname = "planus"; + version = "0.4.0"; + + src = fetchCrate { + pname = "planus-cli"; + inherit version; + hash = "sha256-KpX4KSA2MjfRS8M0WVYpY4hoSvOOB7MUz7YKZwEGqj8="; + }; + + cargoHash = "sha256-yT/ZK5GG0rXpiaCQlQclK2iY8BXhhmiW/UDX9aL8wBQ="; + + nativeBuildInputs = [ + installShellFiles + ]; + + postInstall = lib.optionalString (stdenv.buildPlatform.canExecute stdenv.hostPlatform) '' + installShellCompletion --cmd planus \ + --bash <($out/bin/planus generate-completions bash) \ + --fish <($out/bin/planus generate-completions fish) \ + --zsh <($out/bin/planus generate-completions zsh) + ''; + + meta = with lib; { + description = "An alternative compiler for flatbuffers"; + homepage = "https://github.com/planus-org/planus"; + changelog = "https://github.com/planus-org/planus/blob/v${version}/CHANGELOG.md"; + license = with licenses; [ asl20 mit ]; + maintainers = with maintainers; [ figsoda ]; + }; +} diff --git a/pkgs/development/tools/misc/runme/default.nix b/pkgs/development/tools/misc/runme/default.nix index d90ff72e12dc0..506648005bd89 100644 --- a/pkgs/development/tools/misc/runme/default.nix +++ b/pkgs/development/tools/misc/runme/default.nix @@ -10,13 +10,13 @@ buildGoModule rec { pname = "runme"; - version = "1.2.1"; + version = "1.2.2"; src = fetchFromGitHub { owner = "stateful"; repo = "runme"; rev = "v${version}"; - hash = "sha256-Gk15sqGQRL5v7Fo+tIYM4GM1FihoEAs23HK0cQN9hy4="; + hash = "sha256-SVYxFutmDDHEbYLExy0IxqZZZO13gUVPAA0X1ehVXME="; }; vendorHash = "sha256-el+gM3GRN5KU4RlSAx02rn+22xj28IZq3erZUzPbUUw="; diff --git a/pkgs/development/tools/misc/sccache/default.nix b/pkgs/development/tools/misc/sccache/default.nix index 922cc63716c9e..7511f47f9a6b1 100644 --- a/pkgs/development/tools/misc/sccache/default.nix +++ b/pkgs/development/tools/misc/sccache/default.nix @@ -1,17 +1,17 @@ { lib, fetchFromGitHub, rustPlatform, pkg-config, openssl, stdenv, Security }: rustPlatform.buildRustPackage rec { - version = "0.5.0"; + version = "0.5.3"; pname = "sccache"; src = fetchFromGitHub { owner = "mozilla"; repo = "sccache"; rev = "v${version}"; - sha256 = "sha256-WAIF+X+kwab/my7bineBsWImnHXKne1Suw+b8VM3xUg="; + sha256 = "sha256-oyuXpb0K2lUnjenYrSHhJ+JaRzfoSSkbPyzA4xersQY="; }; - cargoSha256 = "sha256-3+KxoSrZzrn/H4ZWB+jlZTMPo3EkKv/Z/gvBap1sMyg="; + cargoSha256 = "sha256-StPUajNtHLd8YcjUDTd+X75PeldWltV9Wp/L3QhB3Vs="; nativeBuildInputs = [ pkg-config ]; buildInputs = [ openssl ] ++ lib.optional stdenv.isDarwin Security; diff --git a/pkgs/development/tools/misc/typical/default.nix b/pkgs/development/tools/misc/typical/default.nix new file mode 100644 index 0000000000000..6b4a9ab2d0fff --- /dev/null +++ b/pkgs/development/tools/misc/typical/default.nix @@ -0,0 +1,43 @@ +{ lib +, rustPlatform +, fetchFromGitHub +, installShellFiles +, stdenv +}: + +rustPlatform.buildRustPackage rec { + pname = "typical"; + version = "0.9.5"; + + src = fetchFromGitHub { + owner = "stepchowfun"; + repo = "typical"; + rev = "v${version}"; + hash = "sha256-4OByyczbHucav9v9pXqWYyreG+F36G0IodcDTedJxic="; + }; + + cargoHash = "sha256-BtnPCMBPVUGL+6ufhE2TF+dnHCeC/12DMHBaTPlYqBg="; + + nativeBuildInputs = [ + installShellFiles + ]; + + preCheck = '' + export NO_COLOR=true + ''; + + postInstall = lib.optionalString (stdenv.buildPlatform.canExecute stdenv.hostPlatform) '' + installShellCompletion --cmd typical \ + --bash <($out/bin/typical shell-completion bash) \ + --fish <($out/bin/typical shell-completion fish) \ + --zsh <($out/bin/typical shell-completion zsh) + ''; + + meta = with lib; { + description = "Data interchange with algebraic data types"; + homepage = "https://github.com/stepchowfun/typical"; + changelog = "https://github.com/stepchowfun/typical/blob/${src.rev}/CHANGELOG.md"; + license = licenses.mit; + maintainers = with maintainers; [ figsoda ]; + }; +} diff --git a/pkgs/development/tools/nc4nix/default.nix b/pkgs/development/tools/nc4nix/default.nix index 56bad18129384..84c7c2bb76023 100644 --- a/pkgs/development/tools/nc4nix/default.nix +++ b/pkgs/development/tools/nc4nix/default.nix @@ -8,13 +8,13 @@ buildGoModule rec { pname = "nc4nix"; - version = "unstable-2023-05-25"; + version = "unstable-2023-06-05"; src = fetchFromGitHub { owner = "helsinki-systems"; repo = "nc4nix"; - rev = "14cab9b2f8628ae6668c1d01519f558069f7f675"; - sha256 = "sha256-iy9jJMRu0SkfrDufO6WAObqdiusvwhyv+GGHVrD3CV4="; + rev = "b7fa87cb9b21aceaf0cb0f9b612dde4f91ca6655"; + sha256 = "sha256-fVB8l1HyBL7Xq99MgsnnlU4a+ZM7R1ImsAg4czajwCA="; }; patches = [ @@ -32,13 +32,6 @@ buildGoModule rec { sha256 = "sha256-qAAbR1G748+2vwwfAhpe8luVEIKNGifqXqTV9QqaUFc="; name = "add_package_selection_command_line_arg.patch"; }) - # Only consider (new) stable releases of NC apps - # https://github.com/helsinki-systems/nc4nix/issues/4 - (fetchpatch { - url = "https://github.com/helsinki-systems/nc4nix/pull/5/commits/076a188bf30203ddea0217d83f2e3b16f3b9392b.patch"; - sha256 = "sha256-N7X9j0tWD8ZAWjXXCXGITl/EBbrIbKbHJHyskT1rVTs="; - name = "only_consider_stable_releases.patch"; - }) ]; vendorSha256 = "sha256-uhINWxFny/OY7M2vV3ehFzP90J6Z8cn5IZHWOuEg91M="; diff --git a/pkgs/development/tools/ocaml/utop/default.nix b/pkgs/development/tools/ocaml/utop/default.nix index 0afaff2649470..e1a739e999e02 100644 --- a/pkgs/development/tools/ocaml/utop/default.nix +++ b/pkgs/development/tools/ocaml/utop/default.nix @@ -3,35 +3,17 @@ , zed, logs, lwt, react, lwt_react }: -let - switch = - if lib.versionAtLeast ocaml.version "4.08" - then - { - version = "2.10.0"; - sha256 = "sha256-R10WovnqYcYCrDJnPuIQx2zHaPchSYfXDAaVMsJ4LQA="; - duneVersion = "3"; - propagatedBuildInputs = [ findlib lambda-term zed logs ]; - } - else - { - version = "2.9.2"; - sha256 = "sha256-kvFBCe69TRQIWvZV47SH7ISus9k8afGRw5WLKzKqw08="; - duneVersion = "2"; - propagatedBuildInputs = [ lambda-term ]; - }; -in - buildDunePackage rec { pname = "utop"; - inherit (switch) version duneVersion propagatedBuildInputs; + version = "2.12.1"; + propagatedBuildInputs = [ findlib lambda-term zed logs ]; - minimalOCamlVersion = "4.03"; + minimalOCamlVersion = "4.08"; src = fetchurl { url = "https://github.com/ocaml-community/utop/releases/download/${version}/utop-${version}.tbz"; - sha256 = switch.sha256; + sha256 = "sha256-Z6S3pUE4RY5Q7keRUVSQuzkikewWgM+sRLgcR+8bIlM="; }; nativeBuildInputs = [ makeWrapper cppo ]; diff --git a/pkgs/development/tools/oh-my-posh/default.nix b/pkgs/development/tools/oh-my-posh/default.nix index f20592292bdd0..f082f137e1953 100644 --- a/pkgs/development/tools/oh-my-posh/default.nix +++ b/pkgs/development/tools/oh-my-posh/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "oh-my-posh"; - version = "16.8.0"; + version = "16.9.1"; src = fetchFromGitHub { owner = "jandedobbeleer"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-9uMnRGS9sO6Ps/acbAGuef6DbS49DrgFTJ9ad/VJ70g="; + hash = "sha256-oOpTjo0+3nTmQXgB5eGsQnklLdZdizy4HNx5enJ8Hb8="; }; - vendorHash = "sha256-Jd/AsajX2gOEG+UA3+FI0rpiRXvbcBElx0lVJpsBJuM="; + vendorHash = "sha256-nODeIR5TU7tcmoQI7ZqCDxuESmx23Mj1WsFTcCB/htQ="; sourceRoot = "source/src"; diff --git a/pkgs/development/tools/okteto/default.nix b/pkgs/development/tools/okteto/default.nix index 3e30b14f9b44d..b8e7a67270dfe 100644 --- a/pkgs/development/tools/okteto/default.nix +++ b/pkgs/development/tools/okteto/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "okteto"; - version = "2.15.3"; + version = "2.16.3"; src = fetchFromGitHub { owner = "okteto"; repo = "okteto"; rev = version; - hash = "sha256-BzyKmM5Yp9zdNonkDZoJBAmy8jSDwt85Wr9/1nbD7V8="; + hash = "sha256-SbLOrdsBy4rq2wm4tTIfjF61kcXXQQZdOJEclRdASOc="; }; - vendorHash = "sha256-dZ6gzW5R5na5qcHFQqQvKfYb0Bu0kVvVMOaRdtTgkhE="; + vendorHash = "sha256-aNXKRP7WFzscDPjZmDTbgKItNEQrRpsq+XiOuggx85w="; postPatch = '' # Disable some tests that need file system & network access. diff --git a/pkgs/development/tools/operator-sdk/default.nix b/pkgs/development/tools/operator-sdk/default.nix index 93a88fb3bd9d2..6c60b9e1600cc 100644 --- a/pkgs/development/tools/operator-sdk/default.nix +++ b/pkgs/development/tools/operator-sdk/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "operator-sdk"; - version = "1.28.1"; + version = "1.29.0"; src = fetchFromGitHub { owner = "operator-framework"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-YzkPAKwkV8io0lz7JxIX4lciv85iqldkyitrLicbFJc="; + hash = "sha256-oHGs1Bx5k02k6mp9WAe8wIQ4FjMOREcUYv0DKZaXGdE="; }; - vendorHash = "sha256-ZWOIF3vmtoXzdGHHzjPy/351bHzMTTXcgSRBso+ixyM="; + vendorHash = "sha256-I2vL4uRmUbgaf3KGUHSQV2jWozStKHyjek3BQlxyY/c="; nativeBuildInputs = [ makeWrapper diff --git a/pkgs/development/tools/package-project-cmake/default.nix b/pkgs/development/tools/package-project-cmake/default.nix index 3636f4e0412cb..af22ce40a0625 100644 --- a/pkgs/development/tools/package-project-cmake/default.nix +++ b/pkgs/development/tools/package-project-cmake/default.nix @@ -5,13 +5,13 @@ stdenvNoCC.mkDerivation (finalAttrs: { pname = "package-project-cmake"; - version = "1.10.0"; + version = "1.11.0"; src = fetchFromGitHub { owner = "TheLartians"; repo = "PackageProject.cmake"; rev = "v${finalAttrs.version}"; - hash = "sha256-tDjWknwqN8NLx6GX16WOn0JUDAyaGU9HA7fTsHNLx9s="; + hash = "sha256-41cJm6eO5Q6xhARJbshi6Tesk/IxEQNsMShmDcjVqzs="; }; dontConfigure = true; diff --git a/pkgs/development/tools/packer/default.nix b/pkgs/development/tools/packer/default.nix index 1019e55588913..e0a176a15bacf 100644 --- a/pkgs/development/tools/packer/default.nix +++ b/pkgs/development/tools/packer/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "packer"; - version = "1.8.7"; + version = "1.9.1"; src = fetchFromGitHub { owner = "hashicorp"; repo = "packer"; rev = "v${version}"; - sha256 = "sha256-M37JFKAv1GMtMr0UQ8lFEcTuboSMmCQ29dr6OP07HB8="; + sha256 = "sha256-imdVXgW3w0Bv4qWPJIRhZPim7c0WRHKvRS/uBk7nzaI="; }; - vendorHash = "sha256-uQQv89562bPOoKDu5qEEs+p+N8HPRmgFZKUc5YEsz/w="; + vendorHash = "sha256-aRjSYnb8xyjI4Gn4I91aP3evCqimlL5zR6jpgWNFRME="; subPackages = [ "." ]; diff --git a/pkgs/development/tools/parsing/byacc/default.nix b/pkgs/development/tools/parsing/byacc/default.nix index a04527063a83d..17df32083cdc0 100644 --- a/pkgs/development/tools/parsing/byacc/default.nix +++ b/pkgs/development/tools/parsing/byacc/default.nix @@ -5,14 +5,14 @@ stdenv.mkDerivation (finalAttrs: { pname = "byacc"; - version = "20230219"; + version = "20230521"; src = fetchurl { urls = [ "https://invisible-mirror.net/archives/byacc/byacc-${finalAttrs.version}.tgz" "ftp://ftp.invisible-island.net/byacc/byacc-${finalAttrs.version}.tgz" ]; - hash = "sha256-NrlyptSul1hN0YaSX7vDl9JssgYyp2wvUqx2U80IG1g="; + hash = "sha256-WtkVp9WDOqOKXjG9B3UFZmApw142Xf+Faf5FmOqp/vI="; }; configureFlags = [ diff --git a/pkgs/development/tools/parsing/re-flex/default.nix b/pkgs/development/tools/parsing/re-flex/default.nix index 1b4f5051e71fd..c9572e548c18c 100644 --- a/pkgs/development/tools/parsing/re-flex/default.nix +++ b/pkgs/development/tools/parsing/re-flex/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "re-flex"; - version = "3.3.2"; + version = "3.3.4"; src = fetchFromGitHub { owner = "Genivia"; repo = "RE-flex"; rev = "v${version}"; - sha256 = "sha256-nThI0o9m2AM8LTew3TX/lz80kxGoq87geaYw/VokIVk="; + sha256 = "sha256-Fb6Z3LejlWY1L7PkITRh4bCVKpzuwpGOeTc2ZoLxRO0="; }; nativeBuildInputs = [ boost autoconf automake ]; diff --git a/pkgs/development/tools/pip-audit/default.nix b/pkgs/development/tools/pip-audit/default.nix index 6643ddb0e1d15..b14f35a625831 100644 --- a/pkgs/development/tools/pip-audit/default.nix +++ b/pkgs/development/tools/pip-audit/default.nix @@ -22,14 +22,14 @@ with py.pkgs; buildPythonApplication rec { pname = "pip-audit"; - version = "2.5.5"; + version = "2.5.6"; format = "pyproject"; src = fetchFromGitHub { owner = "trailofbits"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-tHNDJF4gmg5JnL+bt7kaLE+Xho721K5+gg1kpIjKY1k="; + hash = "sha256-hpzJtKtvhudT7OzZnuv6LbnMHnHIBYmQsAR1oRglvT0="; }; nativeBuildInputs = [ diff --git a/pkgs/development/tools/pqrs/default.nix b/pkgs/development/tools/pqrs/default.nix index 20ec174015b35..56c99d30babca 100644 --- a/pkgs/development/tools/pqrs/default.nix +++ b/pkgs/development/tools/pqrs/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "pqrs"; - version = "0.2.2"; + version = "0.3.1"; src = fetchFromGitHub { owner = "manojkarthick"; repo = "pqrs"; rev = "v${version}"; - sha256 = "sha256-fqxPQUcd8DG+UYJRWLDJ9RpRkCWutEXjc6J+w1qv8PQ="; + sha256 = "sha256-t6Y6gpMEpccCoyhG66FZEKHVNCbHblaqYZY1iJUZVUA="; }; - cargoSha256 = "sha256-/nfVu8eiQ8JAAUplSyA4eCQqZPCSrcxFzdc2gV95a2w="; + cargoHash = "sha256-fnoYVWpBn5Dil2o+u2MKQqd8dEKFE2i29Qz7cJae+gE="; meta = with lib; { description = "CLI tool to inspect Parquet files"; diff --git a/pkgs/development/tools/protoc-gen-connect-go/default.nix b/pkgs/development/tools/protoc-gen-connect-go/default.nix index eff0d8f900950..ac664c5b2aa72 100644 --- a/pkgs/development/tools/protoc-gen-connect-go/default.nix +++ b/pkgs/development/tools/protoc-gen-connect-go/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "protoc-gen-connect-go"; - version = "1.7.0"; + version = "1.8.0"; src = fetchFromGitHub { owner = "bufbuild"; repo = "connect-go"; rev = "refs/tags/v${version}"; - hash = "sha256-KtyDnBDG67H4r/3s1ehbJhrzeG1LoU2BatWWgfTkAAs="; + hash = "sha256-V6PXapfWo0WlRz1PP90ZcHI/s9MHXhU3p4i7K6eWC8g="; }; vendorHash = "sha256-yCZ16rmqi8DAwIVuEgCw373bQX+cLhSNbpKutF5L2bc="; diff --git a/pkgs/development/tools/pypi2nix/default.nix b/pkgs/development/tools/pypi2nix/default.nix deleted file mode 100644 index 63e98038ee684..0000000000000 --- a/pkgs/development/tools/pypi2nix/default.nix +++ /dev/null @@ -1,26 +0,0 @@ -{ python3 -, fetchPypi -}: -with python3; - -pkgs.buildPythonApplication rec { - pname = "pypi2nix"; - version = "2.0.4"; - src = fetchPypi { - inherit pname version; - sha256 = "0y4zkkcijz5hchd8j6a106ysrg1dnad7dzdgnmz38rgm6zbrky0d"; - }; - propagatedBuildInputs = with pkgs; [ - attrs - click - jinja2 - nix-prefetch-github - packaging - parsley - setuptools - toml - jsonschema - ]; - # https://github.com/nix-community/pypi2nix/issues/460 - meta.broken = true; -} diff --git a/pkgs/development/tools/reindeer/Cargo.lock b/pkgs/development/tools/reindeer/Cargo.lock index 3e59f991547b0..12f3e50dc94fe 100644 --- a/pkgs/development/tools/reindeer/Cargo.lock +++ b/pkgs/development/tools/reindeer/Cargo.lock @@ -72,9 +72,9 @@ checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a" [[package]] name = "bstr" -version = "1.4.0" +version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c3d4260bcc2e8fc9df1eac4919a720effeb63a3f0952f5bf4944adfa18897f09" +checksum = "a246e68bb43f6cd9db24bea052a53e40405417c5fb372e3d1a8a7f770a564ef5" dependencies = [ "memchr", "serde", @@ -82,9 +82,9 @@ dependencies = [ [[package]] name = "bumpalo" -version = "3.12.2" +version = "3.13.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3c6ed94e98ecff0c12dd1b04c15ec0d7d9458ca8fe806cea6f12954efe74c63b" +checksum = "a3e2c3daef883ecc1b5d58c15adae93470a91d425f3532ba1695849656af3fc1" [[package]] name = "byteorder" @@ -350,16 +350,6 @@ dependencies = [ ] [[package]] -name = "ctor" -version = "0.1.26" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6d2301688392eb071b0bf1a37be05c469d3cc4dbbd95df672fe28ab021e6a096" -dependencies = [ - "quote", - "syn 1.0.109", -] - -[[package]] name = "cvss" version = "2.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -425,6 +415,15 @@ dependencies = [ ] [[package]] +name = "erased-serde" +version = "0.3.25" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "4f2b0c2380453a92ea8b6c8e5f64ecaafccddde8ceab55ff7a8ac1029f894569" +dependencies = [ + "serde", +] + +[[package]] name = "errno" version = "0.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -662,9 +661,9 @@ dependencies = [ [[package]] name = "io-lifetimes" -version = "1.0.10" +version = "1.0.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9c66c74d2ae7e79a5a8f7ac924adbe38ee42a859c6539ad869eb51f0b52dc220" +checksum = "eae7b9aee968036d54dce06cebaefd919e4472e753296daccd6d344e3e2df0c2" dependencies = [ "hermit-abi 0.3.1", "libc", @@ -779,17 +778,16 @@ dependencies = [ [[package]] name = "linux-raw-sys" -version = "0.3.7" +version = "0.3.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ece97ea872ece730aed82664c424eb4c8291e1ff2480247ccf7409044bc6479f" +checksum = "ef53942eb7bf7ff43a617b3e2c1c4a5ecf5944a7c1bc12d7ee39bbb15e5c1519" [[package]] name = "log" -version = "0.4.17" +version = "0.4.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "abb12e687cfb44aa40f41fc3978ef76448f9b6038cad6aef4259d3c095a2382e" +checksum = "518ef76f2f87365916b142844c16d8fefd85039bc5699050210a7778ee1cd1de" dependencies = [ - "cfg-if", "value-bag", ] @@ -842,7 +840,7 @@ checksum = "8795add3e14028f11f8e848bd3294898a8294767b3776b6f733560d33bd2530b" dependencies = [ "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", ] [[package]] @@ -885,15 +883,15 @@ dependencies = [ [[package]] name = "once_cell" -version = "1.17.1" +version = "1.17.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b7e5500299e16ebb147ae15a00a942af264cf3688f47923b8fc2cd5858f23ad3" +checksum = "9670a07f94779e00908f3e686eab508878ebb390ba6e604d3a284c00e8d0487b" [[package]] name = "openssl" -version = "0.10.52" +version = "0.10.53" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "01b8574602df80f7b85fdfc5392fa884a4e3b3f4f35402c070ab34c3d3f78d56" +checksum = "12df40a956736488b7b44fe79fe12d4f245bb5b3f5a1f6095e499760015be392" dependencies = [ "bitflags", "cfg-if", @@ -912,7 +910,7 @@ checksum = "a948666b637a0f465e8564c73e89d4dde00d72d4d473cc972f390fc3dcee7d9c" dependencies = [ "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", ] [[package]] @@ -923,18 +921,18 @@ checksum = "ff011a302c396a5197692431fc1948019154afc178baf7d8e37367442a4601cf" [[package]] name = "openssl-src" -version = "111.25.3+1.1.1t" +version = "111.26.0+1.1.1u" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "924757a6a226bf60da5f7dd0311a34d2b52283dd82ddeb103208ddc66362f80c" +checksum = "efc62c9f12b22b8f5208c23a7200a442b2e5999f8bdf80233852122b5a4f6f37" dependencies = [ "cc", ] [[package]] name = "openssl-sys" -version = "0.9.87" +version = "0.9.88" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8e17f59264b2809d77ae94f0e1ebabc434773f370d6ca667bd223ea10e06cc7e" +checksum = "c2ce0f250f34a308dcfdbb351f511359857d4ed2134ba715a4eadd46e1ffd617" dependencies = [ "cc", "libc", @@ -1002,18 +1000,18 @@ dependencies = [ [[package]] name = "proc-macro2" -version = "1.0.58" +version = "1.0.59" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fa1fb82fc0c281dd9671101b66b771ebbe1eaf967b96ac8740dcba4b70005ca8" +checksum = "6aeca18b86b413c660b781aa319e4e2648a3e6f9eadc9b47e9038e6fe9f3451b" dependencies = [ "unicode-ident", ] [[package]] name = "quote" -version = "1.0.27" +version = "1.0.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8f4f29d145265ec1c483c7c654450edde0bfe043d3938d6972630663356d9500" +checksum = "1b9ab9c7eadfd8df19006f1cf1a4aed13540ed5cbc047010ece5826e10825488" dependencies = [ "proc-macro2", ] @@ -1071,9 +1069,9 @@ dependencies = [ [[package]] name = "regex" -version = "1.8.1" +version = "1.8.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "af83e617f331cc6ae2da5443c602dfa5af81e517212d9d611a5b3ba1777b5370" +checksum = "81ca098a9821bd52d6b24fd8b10bd081f47d39c22778cafaa75a2857a62c6390" dependencies = [ "aho-corasick 1.0.1", "memchr", @@ -1082,9 +1080,9 @@ dependencies = [ [[package]] name = "regex-syntax" -version = "0.7.1" +version = "0.7.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a5996294f19bd3aae0453a862ad728f60e6600695733dd5df01da90c54363a3c" +checksum = "436b050e76ed2903236f032a59761c1eb99e1b0aead2c257922771dab1fc8c78" [[package]] name = "reindeer" @@ -1110,7 +1108,7 @@ dependencies = [ "serde_starlark", "spdx", "structopt", - "syn 2.0.16", + "syn 2.0.18", "tempfile", "termcolor", "toml 0.7.4", @@ -1230,9 +1228,9 @@ dependencies = [ [[package]] name = "security-framework" -version = "2.9.0" +version = "2.9.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ca2855b3715770894e67cbfa3df957790aa0c9edc3bf06efa1a84d77fa0839d1" +checksum = "1fc758eb7bffce5b308734e9b0c1468893cae9ff70ebf13e7090be8dcbcc83a8" dependencies = [ "bitflags", "core-foundation", @@ -1277,7 +1275,16 @@ checksum = "8c805777e3930c8883389c602315a24224bcc738b63905ef87cd1420353ea93e" dependencies = [ "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", +] + +[[package]] +name = "serde_fmt" +version = "1.0.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e1d4ddca14104cd60529e8c7f7ba71a2c8acd8f7f5cfcdc2faf97eeb7c3010a4" +dependencies = [ + "serde", ] [[package]] @@ -1400,9 +1407,71 @@ dependencies = [ [[package]] name = "sval" -version = "1.0.0-alpha.5" +version = "2.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "0e6aa16ce8d9e472e21a528a52c875a76a49190f3968f2ec7e9b550ccc28b410" + +[[package]] +name = "sval_buffer" +version = "2.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "905c4373621186ee9637464b0aaa026389ea9e7f841f2225f160a32ba5d5bac4" +dependencies = [ + "sval", + "sval_ref", +] + +[[package]] +name = "sval_dynamic" +version = "2.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ad6b4988322c5f22859a6a7649fa1249aa3dd01514caf8ed57d83735f997bb8b" +dependencies = [ + "sval", +] + +[[package]] +name = "sval_fmt" +version = "2.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "45f6ee7c7b87caf59549e9fe45d6a69c75c8019e79e212a835c5da0e92f0ba08" +checksum = "9d3ccd10346f925c2fbd97b75e8573b38e34431bfba04cc531cd23aad0fbabb8" +dependencies = [ + "itoa", + "ryu", + "sval", +] + +[[package]] +name = "sval_json" +version = "2.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "6a12e1488defd6344e23243c17ea4a1b185c547968749e8a281373fde0bde2d5" +dependencies = [ + "itoa", + "ryu", + "sval", +] + +[[package]] +name = "sval_ref" +version = "2.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b797fc4b284dd0e45f7ec424479e604ea5be9bb191a1ef4e96c20c7685649938" +dependencies = [ + "sval", +] + +[[package]] +name = "sval_serde" +version = "2.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "810fa9a837e67a23e0efa7536250fc4d24043306cc1efd076f1943ba2fc2e62d" +dependencies = [ + "serde", + "sval", + "sval_buffer", + "sval_fmt", +] [[package]] name = "syn" @@ -1417,9 +1486,9 @@ dependencies = [ [[package]] name = "syn" -version = "2.0.16" +version = "2.0.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a6f671d4b5ffdb8eadec19c0ae67fe2639df8684bd7bc4b83d986b8db549cf01" +checksum = "32d41677bcbe24c20c52e7c70b0d8db04134c5d1066bf98662e2871ad200ea3e" dependencies = [ "proc-macro2", "quote", @@ -1493,7 +1562,7 @@ checksum = "f9456a42c5b0d803c8cd86e73dd7cc9edd429499f37a3550d286d5e86720569f" dependencies = [ "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", ] [[package]] @@ -1539,7 +1608,7 @@ dependencies = [ "serde", "serde_spanned", "toml_datetime", - "toml_edit 0.19.9", + "toml_edit 0.19.10", ] [[package]] @@ -1566,9 +1635,9 @@ dependencies = [ [[package]] name = "toml_edit" -version = "0.19.9" +version = "0.19.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "92d964908cec0d030b812013af25a0e57fddfadb1e066ecc6681d86253129d4f" +checksum = "2380d56e8670370eee6566b0bfd4265f65b3f432e8c6d85623f728d4fa31f739" dependencies = [ "indexmap", "serde", @@ -1585,9 +1654,9 @@ checksum = "92888ba5573ff080736b3648696b70cafad7d250551175acbaa4e0385b3e1460" [[package]] name = "unicode-ident" -version = "1.0.8" +version = "1.0.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e5464a87b239f13a63a501f2701565754bae92d243d4bb7eb12f6d57d2269bf4" +checksum = "b15811caf2415fb889178633e7724bad2509101cde276048e013b9def5e51fa0" [[package]] name = "unicode-normalization" @@ -1649,13 +1718,38 @@ dependencies = [ [[package]] name = "value-bag" -version = "1.0.0-alpha.9" +version = "1.4.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a4d330786735ea358f3bc09eea4caa098569c1c93f342d9aca0514915022fe7e" +dependencies = [ + "value-bag-serde1", + "value-bag-sval2", +] + +[[package]] +name = "value-bag-serde1" +version = "1.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2209b78d1249f7e6f3293657c9779fe31ced465df091bbd433a1cf88e916ec55" +checksum = "4735c95b4cca1447b448e2e2e87e98d7e7498f4da27e355cf7af02204521001d" +dependencies = [ + "erased-serde", + "serde", + "serde_fmt", +] + +[[package]] +name = "value-bag-sval2" +version = "1.4.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "859cb4f0ce7da6a118b559ba74b0e63bf569bea867c20ba457a6b1c886a04e97" dependencies = [ - "ctor", "sval", - "version_check", + "sval_buffer", + "sval_dynamic", + "sval_fmt", + "sval_json", + "sval_ref", + "sval_serde", ] [[package]] @@ -1713,7 +1807,7 @@ dependencies = [ "once_cell", "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", "wasm-bindgen-shared", ] @@ -1735,7 +1829,7 @@ checksum = "e128beba882dd1eb6200e1dc92ae6c5dbaa4311aa7bb211ca035779e5efc39f8" dependencies = [ "proc-macro2", "quote", - "syn 2.0.16", + "syn 2.0.18", "wasm-bindgen-backend", "wasm-bindgen-shared", ] diff --git a/pkgs/development/tools/reindeer/default.nix b/pkgs/development/tools/reindeer/default.nix index 4e7ec42464f7e..f46212cc2ac47 100644 --- a/pkgs/development/tools/reindeer/default.nix +++ b/pkgs/development/tools/reindeer/default.nix @@ -11,13 +11,13 @@ rustPlatform.buildRustPackage rec { pname = "reindeer"; - version = "unstable-2023-05-18"; + version = "unstable-2023-05-31"; src = fetchFromGitHub { owner = "facebookincubator"; repo = pname; - rev = "2d6d37dcddaa840b6cd99951176c972f4c3afddd"; - sha256 = "sha256-31Kf6cVqAVFprTHEJp06E0p0y5YwdowhmPti8JBJw3g="; + rev = "9971d473177b26e7ba8cae2a42501f433e5d62b4"; + sha256 = "sha256-RaPYy6ansK/JXEfz7KWDeVSGr6pZH5T1oQRuZW4ZqzI="; }; cargoLock = { @@ -36,7 +36,9 @@ rustPlatform.buildRustPackage rec { darwin.apple_sdk.frameworks.CoreServices ]; - passthru.updateScript = ./update.sh; + passthru.updateScript = nix-update-script { + extraArgs = [ "--version" "branch" ]; + }; meta = with lib; { description = "Reindeer is a tool which takes Rust Cargo dependencies and generates Buck build rules"; diff --git a/pkgs/development/tools/reindeer/update.sh b/pkgs/development/tools/reindeer/update.sh deleted file mode 100755 index 8047fb2bbdc0e..0000000000000 --- a/pkgs/development/tools/reindeer/update.sh +++ /dev/null @@ -1,37 +0,0 @@ -#!/usr/bin/env nix-shell -#!nix-shell -I nixpkgs=./. -i bash -p curl jq nix-prefetch common-updater-scripts mktemp nix coreutils - -# First, check that we only update once per day since the version tag is dependent on the date. -NEW_VERSION="unstable-$(date +%F)" -CURRENT_VERSION=$(nix-instantiate --eval -E "with import ./. {}; reindeer.version" | tr -d '"') -if [[ "$NEW_VERSION" == "$CURRENT_VERSION" ]]; then - echo "skipping reindeer update within same day (version: \"$CURRENT_VERSION\")" - exit 0 -fi - -# Second, let's check if there's a new commit to main. -NEW_REV=$(curl https://api.github.com/repos/facebookincubator/reindeer/branches/main | jq '.commit.sha') -CURRENT_REV=$(nix-instantiate --eval -E "with import ./. {}; reindeer.src.rev") -if [[ "$NEW_REV" == "$CURRENT_REV" ]]; then - echo "reindeer is up-to-date (rev: $CURRENT_REV)" - exit 0 -fi -echo "updating reindeer (new: $NEW_REV) (old: $CURRENT_REV)" - -# Generate the new lockfile in a temporary directory. -pushd $(mktemp -d) -git clone https://github.com/facebookincubator/reindeer.git --depth=1 -pushd reindeer -cargo generate-lockfile -LOCKFILE=$(realpath ./Cargo.lock) -popd -popd -cp $LOCKFILE pkgs/development/tools/reindeer/ - -# Get the new sha256 value. -TRIMMED_REV=$(echo $NEW_REV | tr -d '"') -HASH_RAW=$(nix-prefetch-url https://github.com/facebookincubator/reindeer/archive/${TRIMMED_REV}.tar.gz --unpack --type sha256) -HASH_SRI=$(nix hash to-sri --type sha256 ${HASH_RAW}) - -# Update the file accordingly. -update-source-version reindeer "$NEW_VERSION" ${HASH_SRI} --rev=${TRIMMED_REV} diff --git a/pkgs/development/tools/relic/default.nix b/pkgs/development/tools/relic/default.nix index 6652e5547f126..8d5d9fb3231e9 100644 --- a/pkgs/development/tools/relic/default.nix +++ b/pkgs/development/tools/relic/default.nix @@ -1,23 +1,40 @@ -{ lib, buildGoModule, fetchFromGitHub }: +{ lib +, buildGoModule +, fetchFromGitHub +, testers +, relic +}: buildGoModule rec { pname = "relic"; - version = "7.5.4"; + version = "7.5.5"; src = fetchFromGitHub { owner = "sassoftware"; repo = pname; rev = "v${version}"; - sha256 = "sha256-rm52XrN0554copqIllfaNC9EIZ+6rxVeZWTWR2y9X14="; + sha256 = "sha256-2mE3A2aJWEHqsl/hX6zxjPx+vxDhWLkxENLCNpYEI1M="; }; - vendorHash = "sha256-389ki4hsx7l2gHSiOHledo/ZP+I3NAkk1K8anq2kfEE="; + vendorHash = "sha256-EZohpGzMDYKUbjSOIfoUbbsABNDOddrTt52pv+VQLdI="; + + ldflags = [ + "-s" + "-w" + "-X=main.version=${version}" + "-X=main.commit=${src.rev}" + ]; + + passthru.tests = { + version = testers.testVersion { + package = relic; + }; + }; meta = with lib; { homepage = "https://github.com/sassoftware/relic"; description = "A service and a tool for adding digital signatures to operating system packages for Linux and Windows"; license = licenses.asl20; maintainers = with maintainers; [ strager ]; - platforms = platforms.unix; }; } diff --git a/pkgs/development/tools/renderdoc/default.nix b/pkgs/development/tools/renderdoc/default.nix index f02700c0b8e41..600d01e9bb593 100644 --- a/pkgs/development/tools/renderdoc/default.nix +++ b/pkgs/development/tools/renderdoc/default.nix @@ -32,13 +32,13 @@ let in mkDerivation rec { pname = "renderdoc"; - version = "1.26"; + version = "1.27"; src = fetchFromGitHub { owner = "baldurk"; repo = "renderdoc"; rev = "v${version}"; - sha256 = "sha256-z3qHW7hVde51TkRZO3Ld8DbUODa2Gbnh3zosW2O8eOQ="; + sha256 = "sha256-zkot9LbbZyzQ7CLSEVPsospAo9u7WR2VHjQdnpNiLR0="; }; buildInputs = [ diff --git a/pkgs/development/tools/rgp/default.nix b/pkgs/development/tools/rgp/default.nix index e4af78037a0d0..bfbccdf9d48f7 100644 --- a/pkgs/development/tools/rgp/default.nix +++ b/pkgs/development/tools/rgp/default.nix @@ -19,15 +19,15 @@ }: let - buildNum = "2023-04-25-1075"; + buildNum = "2023-05-22-1083"; in stdenv.mkDerivation { pname = "rgp"; - version = "1.15"; + version = "1.15.1"; src = fetchurl { url = "https://gpuopen.com/download/radeon-developer-tool-suite/RadeonDeveloperToolSuite-${buildNum}.tgz"; - hash = "sha256-sk7Z+fmcDsbnYSjf4H4ke2U1pKTh/p4fWRj+f5XX6LQ="; + hash = "sha256-WSSiNiiIVw1wwt9vxgyirBDe+SPzH87LU1GlSdUhZB8="; }; nativeBuildInputs = [ makeWrapper autoPatchelfHook ]; diff --git a/pkgs/development/tools/rome/default.nix b/pkgs/development/tools/rome/default.nix index 9dd2b7067a0f6..6a6ade47ccac3 100644 --- a/pkgs/development/tools/rome/default.nix +++ b/pkgs/development/tools/rome/default.nix @@ -4,20 +4,21 @@ , pkg-config , stdenv , darwin +, nix-update-script }: rustPlatform.buildRustPackage rec { pname = "rome"; - version = "12.1.0"; + version = "12.1.3"; src = fetchFromGitHub { owner = "rome"; repo = "tools"; rev = "cli/v${version}"; - hash = "sha256-XORu6c/9jrRObdM3qAGszhiUjo88NTzrTyrITuHyd/4="; + hash = "sha256-BlHpdfbyx6nU44vasEw0gRZ0ickyD2eUXPfeFZHSCbI="; }; - cargoHash = "sha256-75r280PMM1zDrqRmhuaU++5aZSCxeyqjHQls8pTzOgQ="; + cargoHash = "sha256-jHdoRymKPjBonT4TvAiTNzGBuTcNoPsvdFKEf33dpVc="; cargoBuildFlags = [ "--package" "rome_cli" ]; @@ -43,6 +44,10 @@ rustPlatform.buildRustPackage rec { "--skip commands::check::fs_error_dereferenced_symlink" ]; + passthru.updateScript = nix-update-script { + extraArgs = [ "--version-regex" "cli%2Fv(.*)" ]; + }; + meta = with lib; { description = "A formatter, linter, bundler, and more for JavaScript, TypeScript, JSON, HTML, Markdown, and CSS"; homepage = "https://rome.tools"; diff --git a/pkgs/development/tools/rust/cargo-dephell/default.nix b/pkgs/development/tools/rust/cargo-dephell/default.nix index 374e88ad38ea5..6a6cfa46d5fd3 100644 --- a/pkgs/development/tools/rust/cargo-dephell/default.nix +++ b/pkgs/development/tools/rust/cargo-dephell/default.nix @@ -32,7 +32,7 @@ rustPlatform.buildRustPackage rec { buildInputs = [ openssl - ] ++ lib.optional stdenv.isDarwin [ + ] ++ lib.optionals stdenv.isDarwin [ curl darwin.apple_sdk.frameworks.Security libgit2_1_3_0 diff --git a/pkgs/development/tools/rust/cargo-llvm-cov/default.nix b/pkgs/development/tools/rust/cargo-llvm-cov/default.nix index f8e1ebebfc9cb..a088e8d6a442e 100644 --- a/pkgs/development/tools/rust/cargo-llvm-cov/default.nix +++ b/pkgs/development/tools/rust/cargo-llvm-cov/default.nix @@ -6,13 +6,13 @@ rustPlatform.buildRustPackage rec { pname = "cargo-llvm-cov"; - version = "0.5.19"; + version = "0.5.20"; src = fetchCrate { inherit pname version; - sha256 = "sha256-5xHDjNFQDmi+SnhxfoCxoBdCqHpZEk/87r2sBKsT+W4="; + sha256 = "sha256-76FR1Irmqi/m6fJbhqN6+iBMfQNDkgO1SDBw/hzNCOY="; }; - cargoSha256 = "sha256-0fj5GJ/gjVBAdfYPHnT33kbnXBIE5+VRONcNBgBSoPc="; + cargoSha256 = "sha256-9QCXHVANvlmgEWNClgFkpCaduK/69vOLD9NTWv4H+Rw="; # skip tests which require llvm-tools-preview checkFlags = [ diff --git a/pkgs/development/tools/rust/cargo-make/default.nix b/pkgs/development/tools/rust/cargo-make/default.nix index a4d6bad29549a..67254a9ad2f54 100644 --- a/pkgs/development/tools/rust/cargo-make/default.nix +++ b/pkgs/development/tools/rust/cargo-make/default.nix @@ -13,11 +13,11 @@ rustPlatform.buildRustPackage rec { pname = "cargo-make"; - version = "0.36.7"; + version = "0.36.8"; src = fetchCrate { inherit pname version; - sha256 = "sha256-OE24RKbSWylX2dXkjBMZ8Va9ONVeMKG/BVdlZD6O+Yc="; + sha256 = "sha256-YLkeGLpNklXFOZ4bKn0GxWIEl9U77+PtAm8WxpDd1a4="; }; nativeBuildInputs = [ pkg-config ]; @@ -25,7 +25,7 @@ rustPlatform.buildRustPackage rec { buildInputs = [ openssl ] ++ lib.optionals stdenv.isDarwin [ Security SystemConfiguration libiconv ]; - cargoHash = "sha256-AAZYY9CbLbbvWWMhkHOc8OhzmwSFXSL9jSga3qMbkDU="; + cargoHash = "sha256-JSMBJYwm/QH1W6j4X+1YLnzKlGizsiu/NI2A1wTXpJk="; # Some tests fail because they need network access. # However, Travis ensures a proper build. diff --git a/pkgs/development/tools/rust/cargo-modules/default.nix b/pkgs/development/tools/rust/cargo-modules/default.nix index 987fff1ff49ad..3cffebbe8df05 100644 --- a/pkgs/development/tools/rust/cargo-modules/default.nix +++ b/pkgs/development/tools/rust/cargo-modules/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-modules"; - version = "0.8.0"; + version = "0.9.0"; src = fetchFromGitHub { owner = "regexident"; repo = pname; rev = version; - sha256 = "sha256-hbhj+D/zJDmRtPuEfg6ECvbfi2P7ecoiJASE8UXs9UE="; + hash = "sha256-F/AAPNhasXnSr0edl0PVSEnX/oWe6QkgHlDOFWXjOkk="; }; - cargoSha256 = "sha256-ydL2LQVewDmTsMWWAvTXSEp2bkfZdCSBxCIY8+DnABQ="; + cargoHash = "sha256-PHPpuMhv8Oj3whrLv9m20dALVUjS9JJRrhXR64wNaqU="; buildInputs = lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.CoreServices diff --git a/pkgs/development/tools/rust/cargo-pgrx/default.nix b/pkgs/development/tools/rust/cargo-pgrx/default.nix new file mode 100644 index 0000000000000..4a00caf9fed99 --- /dev/null +++ b/pkgs/development/tools/rust/cargo-pgrx/default.nix @@ -0,0 +1,29 @@ +{ lib, stdenv, fetchCrate, rustPlatform, pkg-config, openssl, Security }: + +let + pname = "cargo-pgrx"; + version = "0.9.2"; +in +rustPlatform.buildRustPackage rec { + inherit version pname; + + src = fetchCrate { + inherit version pname; + hash = "sha256-z5YmeUBXLyPfodKAI/t2I4sMg0nbdo0thTgoT/kSuwo="; + }; + + cargoHash = "sha256-Ox/jk2+cLNpfBU5IxILMPYaFi56BmfehmA+WDaEkae0="; + + nativeBuildInputs = [ pkg-config ]; + + buildInputs = [ openssl ] + ++ lib.optionals stdenv.isDarwin [ Security ]; + + meta = with lib; { + description = "Build Postgres Extensions with Rust!"; + homepage = "https://github.com/tcdi/pgrx"; + changelog = "https://github.com/tcdi/pgrx/releases/tag/v${version}"; + license = licenses.mit; + maintainers = with maintainers; [ happysalada ]; + }; +} diff --git a/pkgs/development/tools/rust/cargo-public-api/default.nix b/pkgs/development/tools/rust/cargo-public-api/default.nix index 066b61901df25..457b188fa6216 100644 --- a/pkgs/development/tools/rust/cargo-public-api/default.nix +++ b/pkgs/development/tools/rust/cargo-public-api/default.nix @@ -9,14 +9,14 @@ rustPlatform.buildRustPackage rec { pname = "cargo-public-api"; - version = "0.30.0"; + version = "0.31.0"; src = fetchCrate { inherit pname version; - hash = "sha256-bBMjHnDmgFRQ9R8BWVc6zTHDrbFxjBAelkgtHsGLC9w="; + hash = "sha256-TzdYmDLqFYHdp881SDc/QnRZv8QRgSHa00RGN0YPL2M="; }; - cargoHash = "sha256-c8jubHQexg7k0pxUREEGpa9F3SyMBdKLw87ZInEs/fI="; + cargoHash = "sha256-ndRpp9+dcywPKWZ7UB/NadmZKxmdiJjaiQJ/lJj8TKA="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/rust/cargo-semver-checks/default.nix b/pkgs/development/tools/rust/cargo-semver-checks/default.nix index f4f236aa5c842..d6c000405acbe 100644 --- a/pkgs/development/tools/rust/cargo-semver-checks/default.nix +++ b/pkgs/development/tools/rust/cargo-semver-checks/default.nix @@ -12,16 +12,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-semver-checks"; - version = "0.20.1"; + version = "0.21.0"; src = fetchFromGitHub { owner = "obi1kenobi"; repo = pname; rev = "v${version}"; - sha256 = "sha256-pDyF8KCgAhugzTuMSVqfCda5kRAvJwR+OF+G+ZfjeDo="; + sha256 = "sha256-4poiEkZBGbjDh/Ih2n5E/zUSnxJ+Zvv23sJtkoQXeEk="; }; - cargoSha256 = "sha256-zbraVGjEayJJcBH9/GVnTcQGLcNgxaRhbgdJeHCGEEo="; + cargoSha256 = "sha256-aYd8Do5CWayBdbrwyjvIsPmEfUya2r2bpTmQjur0jsg="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/rust/cargo-shuttle/Cargo.lock b/pkgs/development/tools/rust/cargo-shuttle/Cargo.lock index 1f7e5c6f2775a..9e85099d5caa3 100644 --- a/pkgs/development/tools/rust/cargo-shuttle/Cargo.lock +++ b/pkgs/development/tools/rust/cargo-shuttle/Cargo.lock @@ -49,10 +49,19 @@ dependencies = [ ] [[package]] +name = "aho-corasick" +version = "1.0.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "67fc08ce920c31afb70f013dcce1bfc3a3195de6a228474e45e1f145b36f8d04" +dependencies = [ + "memchr", +] + +[[package]] name = "ambient-authority" -version = "0.0.1" +version = "0.0.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ec8ad6edb4840b78c5c3d88de606b22252d552b55f3a4699fbb10fc070ec3049" +checksum = "e9d4ee0d472d1cd2e28c97dfa124b3d8d992e10eb0a035f33f5d12e3a177ba3b" [[package]] name = "android_system_properties" @@ -64,16 +73,59 @@ dependencies = [ ] [[package]] +name = "anstream" +version = "0.3.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "0ca84f3628370c59db74ee214b3263d58f9aadd9b4fe7e711fd87dc452b7f163" +dependencies = [ + "anstyle", + "anstyle-parse", + "anstyle-query", + "anstyle-wincon", + "colorchoice", + "is-terminal", + "utf8parse", +] + +[[package]] name = "anstyle" -version = "0.3.5" +version = "1.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "41ed9a86bf92ae6580e0a31281f65a1b1d867c0cc68d5346e2ae128dddfa6a7d" + +[[package]] +name = "anstyle-parse" +version = "0.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e765fd216e48e067936442276d1d57399e37bce53c264d6fefbe298080cb57ee" +dependencies = [ + "utf8parse", +] + +[[package]] +name = "anstyle-query" +version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "23ea9e81bd02e310c216d080f6223c179012256e5151c41db88d12c88a1684d2" +checksum = "5ca11d4be1bab0c8bc8734a9aa7bf4ee8316d462a08c6ac5052f888fef5b494b" +dependencies = [ + "windows-sys 0.48.0", +] + +[[package]] +name = "anstyle-wincon" +version = "1.0.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "180abfa45703aebe0093f79badacc01b8fd4ea2e35118747e5811127f926e188" +dependencies = [ + "anstyle", + "windows-sys 0.48.0", +] [[package]] name = "anyhow" -version = "1.0.70" +version = "1.0.71" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7de8ce5e0f9f8d88245311066a578d72b7af3e7088f32783804676302df237e4" +checksum = "9c7d0618f0e0b7e8ff11427422b64564d5fb0be1940354bfe2e0529b18a9d9b8" [[package]] name = "arc-swap" @@ -140,9 +192,9 @@ dependencies = [ [[package]] name = "assert_cmd" -version = "2.0.10" +version = "2.0.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ec0b2340f55d9661d76793b2bfc2eb0e62689bd79d067a95707ea762afd5e9dd" +checksum = "86d6b683edf8d1119fe420a94f8a7e389239666aa72e65495d91c00462510151" dependencies = [ "anstyle", "bstr", @@ -185,9 +237,9 @@ dependencies = [ [[package]] name = "async-stream" -version = "0.3.4" +version = "0.3.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ad445822218ce64be7a341abfb0b1ea43b5c23aa83902542a4542e78309d8e5e" +checksum = "cd56dd203fef61ac097dd65721a419ddccb106b2d2b70ba60a6b529f03961a51" dependencies = [ "async-stream-impl", "futures-core", @@ -196,24 +248,24 @@ dependencies = [ [[package]] name = "async-stream-impl" -version = "0.3.4" +version = "0.3.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e4655ae1a7b0cdf149156f780c5bf3f1352bc53cbd9e0a361a7ef7b22947e965" +checksum = "16e62a023e7c117e27523144c5d2459f4397fcc3cab0085af8e2224f643a0193" dependencies = [ "proc-macro2", "quote", - "syn 1.0.109", + "syn 2.0.16", ] [[package]] name = "async-trait" -version = "0.1.67" +version = "0.1.68" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "86ea188f25f0255d8f92797797c97ebf5631fa88178beb1a46fdf5622c9a00e4" +checksum = "b9ccdd8f2a161be9bd5c023df56f1b2a0bd1d83872ae53b71a84a12c9bf6e842" dependencies = [ "proc-macro2", "quote", - "syn 2.0.5", + "syn 2.0.16", ] [[package]] @@ -457,10 +509,10 @@ dependencies = [ "http", "http-body", "hyper", - "hyper-rustls", + "hyper-rustls 0.23.2", "lazy_static", "pin-project-lite", - "rustls", + "rustls 0.20.8", "tokio", "tower", "tracing", @@ -563,14 +615,14 @@ dependencies = [ [[package]] name = "axum" -version = "0.6.11" +version = "0.6.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "13d8068b6ccb8b34db9de397c7043f91db8b4c66414952c6db944f238c4d3db3" +checksum = "f8175979259124331c1d7bf6586ee7e0da434155e4b2d48ec2c8386281d8df39" dependencies = [ "async-trait", "axum-core", - "base64 0.21.0", - "bitflags 1.3.2", + "base64 0.21.1", + "bitflags", "bytes", "futures-util", "headers", @@ -599,9 +651,9 @@ dependencies = [ [[package]] name = "axum-core" -version = "0.3.3" +version = "0.3.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b2f958c80c248b34b9a877a643811be8dbca03ca5ba827f2b63baf3a81e5fc4e" +checksum = "759fa577a247914fd3f7f76d62972792636412fbfd634cd452f6a385a74d2d2c" dependencies = [ "async-trait", "bytes", @@ -636,17 +688,20 @@ dependencies = [ [[package]] name = "axum-extra" -version = "0.7.1" +version = "0.7.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2094b0e3a4f9c2589cbfdaa7eaab9ba9f9f4ab12c601eff22ae4f964340d0e5d" +checksum = "febf23ab04509bd7672e6abe76bd8277af31b679e89fa5ffc6087dc289a448a3" dependencies = [ "axum", + "axum-core", "bytes", "cookie 0.17.0", "futures-util", "http", + "http-body", "mime", "pin-project-lite", + "serde", "tokio", "tower", "tower-http 0.4.0", @@ -667,10 +722,10 @@ dependencies = [ "http-body", "hyper", "pin-project-lite", - "rustls", + "rustls 0.20.8", "rustls-pemfile", "tokio", - "tokio-rustls", + "tokio-rustls 0.23.4", "tower-service", ] @@ -710,9 +765,9 @@ checksum = "0ea22880d78093b0cbe17c89f64a7d457941e65759157ec6cb31a31d652b05e5" [[package]] name = "base64" -version = "0.21.0" +version = "0.21.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a4a4ddaa51a5bc52a6948f74c06d20aaaddb71924eab79b8c97a8c556e942d6a" +checksum = "3f1e31e207a6b8fb791a38ea3105e6cb541f55e4d029902d3039a4ad07cc4105" [[package]] name = "base64-simd" @@ -770,12 +825,6 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a" [[package]] -name = "bitflags" -version = "2.0.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "487f1e0fcbe47deb8b0574e646def1c903389d95241dd1bbcc6ce4a715dfc0c1" - -[[package]] name = "bitmaps" version = "2.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -835,7 +884,7 @@ version = "0.14.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "af254ed2da4936ef73309e9597180558821cb16ae9bba4cb24ce6b612d8d80ed" dependencies = [ - "base64 0.21.0", + "base64 0.21.1", "bollard-stubs", "bytes", "futures-core", @@ -865,7 +914,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "602bda35f33aeb571cef387dcd4042c643a8bf689d8aaac2cc47ea24cb7bc7e0" dependencies = [ "serde", - "serde_with 2.3.1", + "serde_with 2.3.3", ] [[package]] @@ -891,9 +940,9 @@ dependencies = [ [[package]] name = "bstr" -version = "1.4.0" +version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c3d4260bcc2e8fc9df1eac4919a720effeb63a3f0952f5bf4944adfa18897f09" +checksum = "a246e68bb43f6cd9db24bea052a53e40405417c5fb372e3d1a8a7f770a564ef5" dependencies = [ "memchr", "once_cell", @@ -903,9 +952,9 @@ dependencies = [ [[package]] name = "bumpalo" -version = "3.12.0" +version = "3.13.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0d261e256854913907f67ed06efbc3338dfe6179796deefc1ff763fc1aee5535" +checksum = "a3e2c3daef883ecc1b5d58c15adae93470a91d425f3532ba1695849656af3fc1" [[package]] name = "byteorder" @@ -946,38 +995,38 @@ dependencies = [ [[package]] name = "cap-fs-ext" -version = "1.0.7" +version = "1.0.15" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "07d9cd7dc1d714d59974a6a68bed489c914b7b2620d1d4334d88d5ec9f29ebbd" +checksum = "58bc48200a1a0fa6fba138b1802ad7def18ec1cdd92f7b2a04e21f1bd887f7b9" dependencies = [ "cap-primitives", "cap-std", "io-lifetimes", - "windows-sys 0.45.0", + "windows-sys 0.48.0", ] [[package]] name = "cap-primitives" -version = "1.0.7" +version = "1.0.15" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8e41334d53bab60f94878253f8a950c231596c8bbb99b4f71b13223dd48e18c6" +checksum = "a4b6df5b295dca8d56f35560be8c391d59f0420f72e546997154e24e765e6451" dependencies = [ "ambient-authority", - "fs-set-times", + "fs-set-times 0.19.1", "io-extras", "io-lifetimes", "ipnet", "maybe-owned", - "rustix", - "windows-sys 0.45.0", + "rustix 0.37.19", + "windows-sys 0.48.0", "winx", ] [[package]] name = "cap-rand" -version = "1.0.7" +version = "1.0.15" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6b5ddc7e3565e7cc4bf20d0c386b328f9e0f1b83fe0bcc0e055a1f08245e2aca" +checksum = "4d25555efacb0b5244cf1d35833d55d21abc916fff0eaad254b8e2453ea9b8ab" dependencies = [ "ambient-authority", "rand", @@ -985,34 +1034,33 @@ dependencies = [ [[package]] name = "cap-std" -version = "1.0.7" +version = "1.0.15" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e9dd840c16dee1df417f3985d173a2bb6ef55d48ea3d4deddcef46f31c9e7028" +checksum = "3373a62accd150b4fcba056d4c5f3b552127f0ec86d3c8c102d60b978174a012" dependencies = [ "cap-primitives", "io-extras", "io-lifetimes", - "ipnet", - "rustix", + "rustix 0.37.19", ] [[package]] name = "cap-time-ext" -version = "1.0.7" +version = "1.0.15" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "77c39790e8e7455a92993bea5a2e947721c395cfbc344b74f092746c55441d76" +checksum = "e95002993b7baee6b66c8950470e59e5226a23b3af39fc59c47fe416dd39821a" dependencies = [ "cap-primitives", "once_cell", - "rustix", + "rustix 0.37.19", "winx", ] [[package]] name = "cargo" -version = "0.69.0" +version = "0.69.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1fdc51fbabb210bf9bb6ad6127a647cd6c96fb0f0ce6877fdabc6043d3013fe6" +checksum = "2ecf1ab9246253733b30352b5194b4c3a7038a1c7729e1a18b3ba00e479c4d54" dependencies = [ "anyhow", "base64 0.13.1", @@ -1076,20 +1124,20 @@ dependencies = [ [[package]] name = "cargo-edit" -version = "0.11.9" +version = "0.11.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "12e65bf53896ae772812950467a4314e26b8c2d5447aed5b60ae27f747ab718a" +checksum = "435a6490610675d2a027649184df64c709d45f10774a7e5cf4a3f4f2817817db" dependencies = [ "anyhow", "cargo_metadata", "clap", "concolor-control", "crates-index", - "dirs-next", "dunce", "env_proxy", "git2", "hex 0.4.3", + "home", "indexmap", "native-tls", "pathdiff", @@ -1100,8 +1148,8 @@ dependencies = [ "serde_json", "subprocess", "termcolor", - "toml 0.7.3", - "toml_edit 0.19.7", + "toml 0.7.4", + "toml_edit 0.19.9", "ureq", "url", ] @@ -1117,7 +1165,7 @@ dependencies = [ [[package]] name = "cargo-shuttle" -version = "0.16.0" +version = "0.18.0" dependencies = [ "anyhow", "assert_cmd", @@ -1131,7 +1179,7 @@ dependencies = [ "crossbeam-channel", "crossterm", "dialoguer", - "dirs 5.0.0", + "dirs 5.0.1", "dunce", "flate2", "futures", @@ -1195,9 +1243,9 @@ dependencies = [ [[package]] name = "cargo_metadata" -version = "0.15.3" +version = "0.15.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "08a1ec454bc3eead8719cb56e15dbbfecdbc14e4b3a3ae4936cc6e31f5fc0d07" +checksum = "eee4243f1f26fc7a42710e7439c149e2b10b05472f88090acce52632f231a73a" dependencies = [ "camino", "cargo-platform", @@ -1249,60 +1297,61 @@ dependencies = [ [[package]] name = "clap" -version = "4.1.11" +version = "4.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "42dfd32784433290c51d92c438bb72ea5063797fc3cc9a21a8c4346bebbb2098" +checksum = "93aae7a4192245f70fe75dd9157fc7b4a5bf53e88d30bd4396f7d8f9284d5acc" dependencies = [ - "bitflags 2.0.2", + "clap_builder", "clap_derive", - "clap_lex", - "is-terminal", "once_cell", +] + +[[package]] +name = "clap_builder" +version = "4.3.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "4f423e341edefb78c9caba2d9c7f7687d0e72e89df3ce3394554754393ac3990" +dependencies = [ + "anstream", + "anstyle", + "bitflags", + "clap_lex", "strsim", - "termcolor", "terminal_size", ] [[package]] name = "clap_complete" -version = "4.1.5" +version = "4.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "37686beaba5ac9f3ab01ee3172f792fc6ffdd685bfb9e63cfef02c0571a4e8e1" +checksum = "a04ddfaacc3bc9e6ea67d024575fafc2a813027cf374b8f24f7bc233c6b6be12" dependencies = [ "clap", ] [[package]] name = "clap_derive" -version = "4.1.9" +version = "4.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fddf67631444a3a3e3e5ac51c36a5e01335302de677bd78759eaa90ab1f46644" +checksum = "191d9573962933b4027f932c600cd252ce27a8ad5979418fe78e43c07996f27b" dependencies = [ "heck", - "proc-macro-error", "proc-macro2", "quote", - "syn 1.0.109", + "syn 2.0.16", ] [[package]] name = "clap_lex" -version = "0.3.3" +version = "0.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "033f6b7a4acb1f358c742aaca805c939ee73b4c6209ae4318ec7aca81c42e646" -dependencies = [ - "os_str_bytes", -] +checksum = "2da6da31387c7e4ef160ffab6d5e7f00c42626fe39aea70a7b0f1773f7dd6c1b" [[package]] -name = "codespan-reporting" -version = "0.11.1" +name = "colorchoice" +version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3538270d33cc669650c4b093848450d380def10c331d38c768e34cac80576e6e" -dependencies = [ - "termcolor", - "unicode-width", -] +checksum = "acbf1af155f9b9ef647e42cdc158db4b64a1b61f743629225fde6f3e0be2a7c7" [[package]] name = "colored" @@ -1327,9 +1376,9 @@ dependencies = [ [[package]] name = "comfy-table" -version = "6.1.4" +version = "6.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6e7b787b0dc42e8111badfdbe4c3059158ccb2db8780352fa1b01e8ccf45cc4d" +checksum = "7e959d788268e3bf9d35ace83e81b124190378e4c91c9067524675e33394b8ba" dependencies = [ "crossterm", "strum", @@ -1368,7 +1417,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7104119c2f80d887239879d0c50e033cd40eac9a3f3561e0684ba7d5d654f4da" dependencies = [ "atty", - "bitflags 1.3.2", + "bitflags", "concolor-query", ] @@ -1380,15 +1429,15 @@ checksum = "ad159cc964ac8f9d407cbc0aa44b02436c054b541f2b4b5f06972e1efdc54bc7" [[package]] name = "console" -version = "0.15.5" +version = "0.15.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c3d79fbe8970a77e3e34151cc13d3b3e248aa0faaecb9f6091fa07ebefe5ad60" +checksum = "c926e00cc70edefdc64d3a5ff31cc65bb97a3460097762bd23afb4d8145fccf8" dependencies = [ "encode_unicode", "lazy_static", "libc", "unicode-width", - "windows-sys 0.42.0", + "windows-sys 0.45.0", ] [[package]] @@ -1448,9 +1497,9 @@ dependencies = [ [[package]] name = "core-foundation-sys" -version = "0.8.3" +version = "0.8.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5827cebf4670468b8772dd191856768aedcb1b0278a04f989f7766351917b9dc" +checksum = "e496a50fda8aacccc86d7529e2c1e0892dbd0f898a6b5645b5561b89c3210efa" [[package]] name = "cpp_demangle" @@ -1463,27 +1512,27 @@ dependencies = [ [[package]] name = "cpufeatures" -version = "0.2.5" +version = "0.2.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "28d997bd5e24a5928dd43e46dc529867e207907fe0b239c3477d924f7f2ca320" +checksum = "3e4c1eaa2012c47becbbad2ab175484c2a84d1185b566fb2cc5b8707343dfe58" dependencies = [ "libc", ] [[package]] name = "cranelift-bforest" -version = "0.94.0" +version = "0.94.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "862eb053fc21f991db27c73bc51494fe77aadfa09ea257cb43b62a2656fd4cc1" +checksum = "0853f4732d9557cc1f3b4a97112bd5f00a7c619c9828edb45d0a2389ce2913f9" dependencies = [ "cranelift-entity", ] [[package]] name = "cranelift-codegen" -version = "0.94.0" +version = "0.94.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "038a74bc85da2f6f9e237c51b7998b47229c0f9da69b4c6b0590cf6621c45d46" +checksum = "ed06a9dd2e065be7c1f89cdc820c8c328d2cb69b2be0ba6338fe4050b30bf510" dependencies = [ "bumpalo", "cranelift-bforest", @@ -1501,33 +1550,33 @@ dependencies = [ [[package]] name = "cranelift-codegen-meta" -version = "0.94.0" +version = "0.94.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c7fb720a7955cf7cc92c58f3896952589062e6f12d8eb35ef4337e708ed2e738" +checksum = "416f0e0e34689be78c2689b31374404d21f1c7667431fd7cd29bed0fa8a67ce8" dependencies = [ "cranelift-codegen-shared", ] [[package]] name = "cranelift-codegen-shared" -version = "0.94.0" +version = "0.94.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c0954f9426cf0fa7ad57910ea5822a09c5da590222a767a6c38080a8534a0af8" +checksum = "a05c0a89f82c5731ccad8795cd91cc3c771295aa42c268c7f81607388495d374" [[package]] name = "cranelift-entity" -version = "0.94.0" +version = "0.94.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "68c7096c1a66cfa73899645f0a46a6f5c91641e678eeafb0fc47a19ab34069ca" +checksum = "f184fc14ff49b119760e5f96d1c836d89ee0f5d1b94073ebe88f45b745a9c7a5" dependencies = [ "serde", ] [[package]] name = "cranelift-frontend" -version = "0.94.0" +version = "0.94.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "697f2fdaceb228fea413ea91baa7c6b8533fc2e61ac5a08db7acc1b31e673a2a" +checksum = "1990b107c505d3bb0e9fe7ee9a4180912c924c12da1ebed68230393789387858" dependencies = [ "cranelift-codegen", "log", @@ -1537,15 +1586,15 @@ dependencies = [ [[package]] name = "cranelift-isle" -version = "0.94.0" +version = "0.94.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f41037f4863e0c6716dbe60e551d501f4197383cb43d75038c0170159fc8fb5b" +checksum = "e47d398114545d4de2b152c28b1428c840e55764a6b58eea2a0e5c661d9a382a" [[package]] name = "cranelift-native" -version = "0.94.0" +version = "0.94.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "797c6e5643eb654bb7bf496f1f03518323a89b937b84020b786620f910364a52" +checksum = "9c769285ed99f5791ca04d9716b3ca3508ec4e7b959759409fddf51ad0481f51" dependencies = [ "cranelift-codegen", "libc", @@ -1554,9 +1603,9 @@ dependencies = [ [[package]] name = "cranelift-wasm" -version = "0.94.0" +version = "0.94.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "69b5fae12cefda3a2c43837e562dd525ab1d75b27989eece66de5b2c8fe120f9" +checksum = "e0cbcdec1d7b678919910d213b9e98d5d4c65eeb2153ac042535b00931f093d3" dependencies = [ "cranelift-codegen", "cranelift-entity", @@ -1570,9 +1619,9 @@ dependencies = [ [[package]] name = "crates-index" -version = "0.19.7" +version = "0.19.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "51ddd986d8b0405750d3da55a36cfa5ddad74a6dbf8826dec1cae40bf1218bd4" +checksum = "65aa5fcd68f892b56202f15a18a53308b2d489b728958dbce48d2d1f3bbaa685" dependencies = [ "git2", "hex 0.4.3", @@ -1586,7 +1635,7 @@ dependencies = [ "serde_derive", "serde_json", "smol_str", - "toml 0.7.3", + "toml 0.7.4", ] [[package]] @@ -1629,9 +1678,9 @@ dependencies = [ [[package]] name = "crossbeam-channel" -version = "0.5.7" +version = "0.5.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cf2b3e8478797446514c91ef04bafcb59faba183e621ad488df88983cc14128c" +checksum = "a33c2bf77f2df06183c3aa30d1e96c0695a313d4f9c453cc3762a6db39f99200" dependencies = [ "cfg-if 1.0.0", "crossbeam-utils", @@ -1682,11 +1731,11 @@ dependencies = [ [[package]] name = "crossterm" -version = "0.25.0" +version = "0.26.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e64e6c0fbe2c17357405f7c758c1ef960fce08bdfb2c03d88d2a18d7e09c4b67" +checksum = "a84cda67535339806297f1b331d6dd6320470d2a0fe65381e79ee9e156dd3d13" dependencies = [ - "bitflags 1.3.2", + "bitflags", "crossterm_winapi", "libc", "mio", @@ -1707,9 +1756,9 @@ dependencies = [ [[package]] name = "crypto-bigint" -version = "0.5.1" +version = "0.5.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7c2538c4e68e52548bacb3e83ac549f903d44f011ac9d5abb5e132e67d0808f7" +checksum = "cf4c2f4e1afd912bc40bfd6fed5d9dc1f288e0ba01bfcc835cc5bc3eb13efe15" dependencies = [ "generic-array", "rand_core", @@ -1792,9 +1841,9 @@ dependencies = [ [[package]] name = "curl-sys" -version = "0.4.61+curl-8.0.1" +version = "0.4.62+curl-8.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "14d05c10f541ae6f3bc5b3d923c20001f47db7d5f0b2bc6ad16490133842db79" +checksum = "274ef7ef7c1113c7611af49ce248a700afa1171045a1aaa40137030773f993b8" dependencies = [ "cc", "libc", @@ -1807,50 +1856,6 @@ dependencies = [ ] [[package]] -name = "cxx" -version = "1.0.93" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a9c00419335c41018365ddf7e4d5f1c12ee3659ddcf3e01974650ba1de73d038" -dependencies = [ - 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"dirs-sys 0.4.0", -] - -[[package]] -name = "dirs-next" -version = "2.0.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b98cf8ebf19c3d1b223e151f99a4f9f0690dca41414773390fc824184ac833e1" -dependencies = [ - "cfg-if 1.0.0", - "dirs-sys-next", + "dirs-sys 0.4.1", ] [[package]] @@ -2049,13 +2045,14 @@ dependencies = [ [[package]] name = "dirs-sys" -version = "0.4.0" +version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "04414300db88f70d74c5ff54e50f9e1d1737d9a5b90f53fcf2e95ca2a9ab554b" +checksum = "520f05a5cbd335fae5a99ff7a6ab8627577660ee5cfd6a94a6a929b52ff0321c" dependencies = [ "libc", + "option-ext", "redox_users", - "windows-sys 0.45.0", + "windows-sys 0.48.0", ] [[package]] @@ -2071,13 +2068,13 @@ dependencies = [ [[package]] name = "displaydoc" -version = "0.2.3" +version = "0.2.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3bf95dc3f046b9da4f2d51833c0d3547d8564ef6910f5c1ed130306a75b92886" +checksum = "487585f4d0c6655fe74905e2504d8ad6908e4db67f744eb140876906c2f3175d" dependencies = [ "proc-macro2", "quote", - "syn 1.0.109", + "syn 2.0.16", ] [[package]] @@ -2088,26 +2085,28 @@ checksum = "fea41bba32d969b513997752735605054bc0dfa92b4c56bf1189f2e174be7a10" [[package]] name = "dotenvy" -version = "0.15.6" +version = "0.15.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "03d8c417d7a8cb362e0c37e5d815f5eb7c37f79ff93707329d5a194e42e54ca0" +checksum = "1aaf95b3e5c8f23aa320147307562d361db0ae0d51242340f558153b4eb2439b" [[package]] name = "dunce" -version = "1.0.3" +version = "1.0.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0bd4b30a6560bbd9b4620f4de34c3f14f60848e58a9b7216801afcb4c7b31c3c" +checksum = "56ce8c6da7551ec6c462cbaf3bfbc75131ebbfa1c944aeaa9dab51ca1c5f0c3b" [[package]] name = "ecdsa" -version = "0.16.1" +version = "0.16.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d1b0a1222f8072619e8a6b667a854020a03d363738303203c09468b3424a420a" +checksum = "0997c976637b606099b9985693efa3581e84e41f5c11ba5255f88711058ad428" dependencies = [ "der", + "digest 0.10.7", "elliptic-curve", "rfc6979", "signature", + "spki", ] [[package]] @@ -2127,13 +2126,13 @@ checksum = "7fcaabb2fef8c910e7f4c7ce9f67a1283a1715879a7c230ca9d6d1ae31f16d91" [[package]] name = "elliptic-curve" -version = "0.13.2" +version = "0.13.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6ea5a92946e8614bb585254898bb7dd1ddad241ace60c52149e3765e34cc039d" +checksum = "968405c8fdc9b3bf4df0a6638858cc0b52462836ab6b1c87377785dd09cf1c0b" dependencies = [ "base16ct", "crypto-bigint", - "digest 0.10.6", + "digest 0.10.7", "ff", "generic-array", "group", @@ -2198,13 +2197,13 @@ dependencies = [ [[package]] name = "errno" -version = "0.2.8" +version = "0.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f639046355ee4f37944e44f60642c6f3a7efa3cf6b78c78a0d989a8ce6c396a1" +checksum = "4bcfec3a70f97c962c307b2d2c56e358cf1d00b558d74262b5f929ee8cc7e73a" dependencies = [ "errno-dragonfly", "libc", - "winapi", + "windows-sys 0.48.0", ] [[package]] @@ -2240,13 +2239,13 @@ dependencies = [ [[package]] name = "fd-lock" -version = "3.0.10" +version = "3.0.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8ef1a30ae415c3a691a4f41afddc2dbcd6d70baf338368d85ebc1e8ed92cedb9" +checksum = "39ae6b3d9530211fb3b12a95374b8b0823be812f53d09e18c5675c0146b09642" dependencies = [ "cfg-if 1.0.0", - "rustix", - "windows-sys 0.45.0", + "rustix 0.37.19", + "windows-sys 0.48.0", ] [[package]] @@ -2261,9 +2260,9 @@ dependencies = [ [[package]] name = "fiat-crypto" -version = "0.1.19" +version = "0.1.20" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "93ace6ec7cc19c8ed33a32eaa9ea692d7faea05006b5356b9e2b668ec4bc3955" +checksum = "e825f6987101665dea6ec934c09ec6d721de7bc1bf92248e1d5810c8cd636b77" [[package]] name = "file-per-thread-logger" @@ -2277,14 +2276,14 @@ dependencies = [ [[package]] name = "filetime" -version = "0.2.20" +version = "0.2.21" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8a3de6e8d11b22ff9edc6d916f890800597d60f8b2da1caf2955c274638d6412" +checksum = "5cbc844cecaee9d4443931972e1289c8ff485cb4cc2767cb03ca139ed6885153" dependencies = [ "cfg-if 1.0.0", "libc", - "redox_syscall", - "windows-sys 0.45.0", + "redox_syscall 0.2.16", + "windows-sys 0.48.0", ] [[package]] @@ -2301,9 +2300,9 @@ checksum = "0ce7134b9999ecaf8bcd65542e436736ef32ddca1b3e06094cb6ec5755203b80" [[package]] name = "flate2" -version = "1.0.25" +version = "1.0.26" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a8a2db397cb1c8772f31494cb8917e48cd1e64f0fa7efac59fbd741a0a8ce841" +checksum = "3b9429470923de8e8cbd4d2dc513535400b4b3fef0319fb5c4e1f520a7bef743" dependencies = [ "crc32fast", "libz-sys", @@ -2319,7 +2318,7 @@ dependencies = [ "futures-core", "futures-sink", "pin-project", - "spin 0.9.6", + "spin 0.9.8", ] [[package]] @@ -2365,11 +2364,22 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "857cf27edcb26c2a36d84b2954019573d335bb289876113aceacacdca47a4fd4" dependencies = [ "io-lifetimes", - "rustix", + "rustix 0.36.14", "windows-sys 0.45.0", ] [[package]] +name = "fs-set-times" +version = "0.19.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7833d0f115a013d51c55950a3b09d30e4b057be9961b709acb9b5b17a1108861" +dependencies = [ + "io-lifetimes", + "rustix 0.37.19", + "windows-sys 0.48.0", +] + +[[package]] name = "funty" version = "2.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2377,9 +2387,9 @@ checksum = "e6d5a32815ae3f33302d95fdcb2ce17862f8c65363dcfd29360480ba1001fc9c" [[package]] name = "futures" -version = "0.3.27" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "531ac96c6ff5fd7c62263c5e3c67a603af4fcaee2e1a0ae5565ba3a11e69e549" +checksum = "23342abe12aba583913b2e62f22225ff9c950774065e4bfb61a19cd9770fec40" dependencies = [ "futures-channel", "futures-core", @@ -2392,9 +2402,9 @@ dependencies = [ [[package]] name = "futures-channel" -version = "0.3.27" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "164713a5a0dcc3e7b4b1ed7d3b433cabc18025386f9339346e8daf15963cf7ac" +checksum = "955518d47e09b25bbebc7a18df10b81f0c766eaf4c4f1cccef2fca5f2a4fb5f2" dependencies = [ "futures-core", "futures-sink", @@ -2402,15 +2412,15 @@ dependencies = [ [[package]] name = "futures-core" -version = "0.3.27" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "86d7a0c1aa76363dac491de0ee99faf6941128376f1cf96f07db7603b7de69dd" +checksum = "4bca583b7e26f571124fe5b7561d49cb2868d79116cfa0eefce955557c6fee8c" [[package]] name = "futures-executor" -version = "0.3.27" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1997dd9df74cdac935c76252744c1ed5794fac083242ea4fe77ef3ed60ba0f83" +checksum = "ccecee823288125bd88b4d7f565c9e58e41858e47ab72e8ea2d64e93624386e0" dependencies = [ "futures-core", "futures-task", @@ -2430,38 +2440,38 @@ dependencies = [ [[package]] name = "futures-io" -version = "0.3.27" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "89d422fa3cbe3b40dca574ab087abb5bc98258ea57eea3fd6f1fa7162c778b91" +checksum = "4fff74096e71ed47f8e023204cfd0aa1289cd54ae5430a9523be060cdb849964" [[package]] name = "futures-macro" -version = "0.3.27" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3eb14ed937631bd8b8b8977f2c198443447a8355b6e3ca599f38c975e5a963b6" +checksum = "89ca545a94061b6365f2c7355b4b32bd20df3ff95f02da9329b34ccc3bd6ee72" dependencies = [ "proc-macro2", "quote", - "syn 1.0.109", + "syn 2.0.16", ] [[package]] name = "futures-sink" -version = "0.3.27" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ec93083a4aecafb2a80a885c9de1f0ccae9dbd32c2bb54b0c3a65690e0b8d2f2" +checksum = "f43be4fe21a13b9781a69afa4985b0f6ee0e1afab2c6f454a8cf30e2b2237b6e" [[package]] name = "futures-task" -version = "0.3.27" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fd65540d33b37b16542a0438c12e6aeead10d4ac5d05bd3f805b8f35ab592879" +checksum = "76d3d132be6c0e6aa1534069c705a74a5997a356c0dc2f86a47765e5617c5b65" [[package]] name = "futures-util" -version = "0.3.27" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3ef6b17e481503ec85211fed8f39d1970f128935ca1f814cd32ac4a6842e84ab" +checksum = "26b01e40b772d54cf6c6d721c1d1abd0647a0106a12ecaa1c186273392a69533" dependencies = [ "futures-channel", "futures-core", @@ -2505,9 +2515,9 @@ dependencies = [ [[package]] name = "generic-array" -version = "0.14.6" +version = "0.14.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bff49e947297f3312447abdca79f45f4738097cc82b06e72054d2223f601f1b9" +checksum = "85649ca51fd72272d7821adaf274ad91c288277713d9c18820d8499a7ff69e9a" dependencies = [ "typenum", "version_check", @@ -2516,9 +2526,9 @@ dependencies = [ [[package]] name = "getrandom" -version = "0.2.8" +version = "0.2.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c05aeb6a22b8f62540c194aac980f2115af067bfe15a0734d7277a768d396b31" +checksum = "c85e1d9ab2eadba7e5040d4e09cbd6d072b76a557ad64e797c2cb9d4da21d7e4" dependencies = [ "cfg-if 1.0.0", "js-sys", @@ -2544,7 +2554,7 @@ version = "0.16.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "be36bc9e0546df253c0cc41fd0af34f5e92845ad8509462ec76672fac6997f5b" dependencies = [ - "bitflags 1.3.2", + "bitflags", "libc", "libgit2-sys", "log", @@ -2577,7 +2587,7 @@ version = "0.4.10" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "029d74589adefde59de1a0c4f4732695c32805624aec7b68d91503d4dba79afc" dependencies = [ - "aho-corasick", + "aho-corasick 0.7.20", "bstr", "fnv", "log", @@ -2597,9 +2607,9 @@ dependencies = [ [[package]] name = "h2" -version = "0.3.16" +version = "0.3.19" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5be7b54589b581f624f566bf5d8eb2bab1db736c51528720b6bd36b96b55924d" +checksum = "d357c7ae988e7d2182f7d7871d0b963962420b0678b0997ce7de72001aeab782" dependencies = [ "bytes", "fnv", @@ -2619,9 +2629,6 @@ name = "hashbrown" version = "0.12.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8a9ee70c43aaf417c914396645a0fa852624801b24ebb7ae78fe8272889ac888" -dependencies = [ - "ahash 0.7.6", -] [[package]] name = "hashbrown" @@ -2634,11 +2641,11 @@ dependencies = [ [[package]] name = "hashlink" -version = "0.8.1" +version = "0.8.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "69fe1fcf8b4278d860ad0548329f892a3631fb63f82574df68275f34cdbe0ffa" +checksum = "0761a1b9491c4f2e3d66aa0f62d0fba0af9a0e2852e4d48ea506632a4b56e6aa" dependencies = [ - "hashbrown 0.12.3", + "hashbrown 0.13.2", ] [[package]] @@ -2648,7 +2655,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f3e372db8e5c0d213e0cd0b9be18be2aca3d44cf2fe30a9d46a65581cd454584" dependencies = [ "base64 0.13.1", - "bitflags 1.3.2", + "bitflags", "bytes", "headers-core", "http", @@ -2739,16 +2746,16 @@ version = "0.12.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6c49c37c09c17a53d937dfbb742eb3a961d65a994e6bcdcf37e7399d0cc8ab5e" dependencies = [ - "digest 0.10.6", + "digest 0.10.7", ] [[package]] name = "home" -version = "0.5.4" +version = "0.5.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "747309b4b440c06d57b0b25f2aee03ee9b5e5397d288c60e21fc709bb98a7408" +checksum = "5444c27eef6923071f7ebcc33e3444508466a76f7a2b93da00ed6e19f30c1ddb" dependencies = [ - "winapi", + "windows-sys 0.48.0", ] [[package]] @@ -2829,9 +2836,9 @@ checksum = "9a3a5bfb195931eeb336b2a7b4d761daec841b97f947d34394601737a7bba5e4" [[package]] name = "hyper" -version = "0.14.25" +version = "0.14.26" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cc5e554ff619822309ffd57d8734d77cd5ce6238bc956f037ea06c58238c9899" +checksum = "ab302d72a6f11a3b910431ff93aae7e773078c769f0a3ef15fb9ec692ed147d4" dependencies = [ "bytes", "futures-channel", @@ -2871,10 +2878,24 @@ dependencies = [ "http", "hyper", "log", - "rustls", + "rustls 0.20.8", + "rustls-native-certs", + "tokio", + "tokio-rustls 0.23.4", +] + +[[package]] +name = "hyper-rustls" +version = "0.24.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "0646026eb1b3eea4cd9ba47912ea5ce9cc07713d105b1a14698f4e6433d348b7" +dependencies = [ + "http", + "hyper", + "rustls 0.21.1", "rustls-native-certs", "tokio", - "tokio-rustls", + "tokio-rustls 0.24.0", ] [[package]] @@ -2917,9 +2938,9 @@ dependencies = [ [[package]] name = "iana-time-zone" -version = "0.1.54" +version = "0.1.56" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0c17cc76786e99f8d2f055c11159e7f0091c42474dcc3189fbab96072e873e6d" +checksum = "0722cd7114b7de04316e7ea5456a0bbb20e4adb46fd27a3697adb812cff0f37c" dependencies = [ "android_system_properties", "core-foundation-sys", @@ -2931,12 +2952,11 @@ dependencies = [ [[package]] name = "iana-time-zone-haiku" -version = "0.1.1" +version = "0.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0703ae284fc167426161c2e3f1da3ea71d94b21bedbcc9494e92b28e334e3dca" +checksum = "f31827a206f56af32e590ba56d5d2d085f558508192593743f16b2306495269f" dependencies = [ - "cxx", - "cxx-build", + "cc", ] [[package]] @@ -3005,9 +3025,9 @@ dependencies = [ [[package]] name = "indexmap" -version = "1.9.2" +version = "1.9.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1885e79c1fc4b10f0e172c475f458b7f7b93061064d98c3293e98c5ba0c8b399" +checksum = "bd070e393353796e801d209ad339e89596eb4c8d430d18ede6a1cced8fafbd99" dependencies = [ "autocfg", "hashbrown 0.12.3", @@ -3022,7 +3042,7 @@ checksum = "cef509aa9bc73864d6756f0d34d35504af3cf0844373afe9b8669a5b8005a729" dependencies = [ "console", "number_prefix", - "portable-atomic", + "portable-atomic 0.3.20", "unicode-width", ] @@ -3046,13 +3066,13 @@ dependencies = [ [[package]] name = "instant-acme" -version = "0.2.0" +version = "0.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fbbf90cf8ba6f21d654be86375ee5e516ea38540a842b7259d3ddb848181691c" +checksum = "f3d50eb225913c1903c788287ddd0b16369771e5abc988756a5e5927390ba04f" dependencies = [ - "base64 0.21.0", + "base64 0.21.1", "hyper", - "hyper-rustls", + "hyper-rustls 0.24.0", "ring", "serde", "serde_json", @@ -3061,23 +3081,23 @@ dependencies = [ [[package]] name = "io-extras" -version = "0.17.2" +version = "0.17.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d79107d6e60d78351e11f0a2dc9d0eaf304a7efb592e92603783afb8479c7d97" +checksum = "fde93d48f0d9277f977a333eca8313695ddd5301dc96f7e02aeddcb0dd99096f" dependencies = [ "io-lifetimes", - "windows-sys 0.45.0", + "windows-sys 0.48.0", ] [[package]] name = "io-lifetimes" -version = "1.0.9" +version = "1.0.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "09270fd4fa1111bc614ed2246c7ef56239a3063d5be0d1ec3b589c505d400aeb" +checksum = "9c66c74d2ae7e79a5a8f7ac924adbe38ee42a859c6539ad869eb51f0b52dc220" dependencies = [ "hermit-abi 0.3.1", "libc", - "windows-sys 0.45.0", + "windows-sys 0.48.0", ] [[package]] @@ -3094,20 +3114,20 @@ dependencies = [ [[package]] name = "ipnet" -version = "2.7.1" +version = "2.7.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "30e22bd8629359895450b59ea7a776c850561b96a3b1d31321c1949d9e6c9146" +checksum = "12b6ee2129af8d4fb011108c73d99a1b83a85977f23b82460c0ae2e25bb4b57f" [[package]] name = "is-terminal" -version = "0.4.5" +version = "0.4.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8687c819457e979cc940d09cb16e42a1bf70aa6b60a549de6d3a62a0ee90c69e" +checksum = "adcf93614601c8129ddf72e2d5633df827ba6551541c6d8c59520a371475be1f" dependencies = [ "hermit-abi 0.3.1", "io-lifetimes", - "rustix", - "windows-sys 0.45.0", + "rustix 0.37.19", + "windows-sys 0.48.0", ] [[package]] @@ -3178,9 +3198,9 @@ dependencies = [ [[package]] name = "js-sys" -version = "0.3.61" +version = "0.3.63" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "445dde2150c55e483f3d8416706b97ec8e8237c307e5b7b4b8dd15e6af2a0730" +checksum = "2f37a4a5928311ac501dee68b3c7613a1037d0edb30c8e5427bd832d55d1b790" dependencies = [ "wasm-bindgen", ] @@ -3191,7 +3211,7 @@ version = "8.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6971da4d9c3aa03c3d8f3ff0f4155b534aad021292003895a469716b2a230378" dependencies = [ - "base64 0.21.0", + "base64 0.21.1", "pem", "ring", "serde", @@ -3228,9 +3248,9 @@ checksum = "884e2677b40cc8c339eaefcb701c32ef1fd2493d71118dc0ca4b6a736c93bd67" [[package]] name = "libc" -version = "0.2.140" +version = "0.2.144" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "99227334921fae1a979cf0bfdfcc6b3e5ce376ef57e16fb6fb3ea2ed6095f80c" +checksum = "2b00cc1c228a6782d0f076e7b232802e0c5689d41bb5df366f2a6b6621cfdfe1" [[package]] name = "libgit2-sys" @@ -3248,9 +3268,9 @@ dependencies = [ [[package]] name = "libm" -version = "0.2.6" +version = "0.2.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "348108ab3fba42ec82ff6e9564fc4ca0247bdccdc68dd8af9764bbc79c3c8ffb" +checksum = "f7012b1bbb0719e1097c47611d3898568c546d597c2e74d66f6087edd5233ff4" [[package]] name = "libnghttp2-sys" @@ -3289,9 +3309,9 @@ dependencies = [ [[package]] name = "libz-sys" -version = "1.1.8" +version = "1.1.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9702761c3935f8cc2f101793272e202c72b99da8f4224a19ddcf1279a6450bbf" +checksum = "56ee889ecc9568871456d42f603d6a0ce59ff328d291063a45cbdf0036baf6db" dependencies = [ "cc", "libc", @@ -3300,15 +3320,6 @@ dependencies = [ ] [[package]] -name = "link-cplusplus" -version = "1.0.8" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ecd207c9c713c34f95a097a5b029ac2ce6010530c7b49d7fea24d977dede04f5" -dependencies = [ - "cc", -] - -[[package]] name = "linked-hash-map" version = "0.5.6" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3321,6 +3332,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f051f77a7c8e6957c0696eac88f26b0117e54f52d3fc682ab19397a8812846a4" [[package]] +name = "linux-raw-sys" +version = "0.3.8" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ef53942eb7bf7ff43a617b3e2c1c4a5ecf5944a7c1bc12d7ee39bbb15e5c1519" + +[[package]] name = "lock_api" version = "0.4.9" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3405,7 +3422,7 @@ version = "0.10.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6365506850d44bff6e2fbcb5176cf63650e48bd45ef2fe2665ae1570e0f4b9ca" dependencies = [ - "digest 0.10.6", + "digest 0.10.7", ] [[package]] @@ -3416,11 +3433,11 @@ checksum = "2dffe52ecf27772e601905b7522cb4ef790d2cc203488bbd0e2fe85fcb74566d" [[package]] name = "memfd" -version = "0.6.2" +version = "0.6.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b20a59d985586e4a5aef64564ac77299f8586d8be6cf9106a5a40207e8908efb" +checksum = "ffc89ccdc6e10d6907450f753537ebc5c5d3460d2e4e62ea74bd571db62c0f9e" dependencies = [ - "rustix", + "rustix 0.37.19", ] [[package]] @@ -3465,9 +3482,9 @@ checksum = "68354c5c6bd36d73ff3feceb05efa59b6acb7626617f4962be322a825e61f79a" [[package]] name = "miniz_oxide" -version = "0.6.2" +version = "0.7.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b275950c28b37e794e8c55d88aeb5e139d0ce23fdbbeda68f8d7174abdf9e8fa" +checksum = "e7810e0be55b428ada41041c41f32c9f1a42817901b4ccf45fa3d4b6561e74c7" dependencies = [ "adler", ] @@ -3495,13 +3512,13 @@ dependencies = [ [[package]] name = "mongodb" -version = "2.4.0" +version = "2.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a37fe10c1485a0cd603468e284a1a8535b4ecf46808f5f7de3639a1e1252dbf8" +checksum = "ebe15399de63ad4294c80069967736cbb87ebe467a8cd0629df9cab88a6fbde6" dependencies = [ "async-trait", "base64 0.13.1", - "bitflags 1.3.2", + "bitflags", "bson", "chrono", "derivative", @@ -3518,7 +3535,7 @@ dependencies = [ "percent-encoding", "rand", "rustc_version_runtime", - "rustls", + "rustls 0.20.8", "rustls-pemfile", "serde", "serde_bytes", @@ -3531,7 +3548,7 @@ dependencies = [ "take_mut", "thiserror", "tokio", - "tokio-rustls", + "tokio-rustls 0.23.4", "tokio-util", "trust-dns-proto", "trust-dns-resolver", @@ -3577,7 +3594,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f346ff70e7dbfd675fe90590b92d59ef2de15a8779ae305ebcbfd3f0caf59be4" dependencies = [ "autocfg", - "bitflags 1.3.2", + "bitflags", "cfg-if 1.0.0", "libc", "memoffset 0.6.5", @@ -3714,11 +3731,11 @@ dependencies = [ [[package]] name = "openssl" -version = "0.10.47" +version = "0.10.52" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d8b277f87dacc05a6b709965d1cbafac4649d6ce9f3ce9ceb88508b5666dfec9" +checksum = "01b8574602df80f7b85fdfc5392fa884a4e3b3f4f35402c070ab34c3d3f78d56" dependencies = [ - "bitflags 1.3.2", + "bitflags", "cfg-if 1.0.0", "foreign-types", "libc", @@ -3729,13 +3746,13 @@ dependencies = [ [[package]] name = "openssl-macros" -version = "0.1.0" +version = "0.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b501e44f11665960c7e7fcf062c7d96a14ade4aa98116c004b2e37b5be7d736c" +checksum = "a948666b637a0f465e8564c73e89d4dde00d72d4d473cc972f390fc3dcee7d9c" dependencies = [ "proc-macro2", "quote", - "syn 1.0.109", + "syn 2.0.16", ] [[package]] @@ -3746,20 +3763,19 @@ checksum = "ff011a302c396a5197692431fc1948019154afc178baf7d8e37367442a4601cf" [[package]] name = "openssl-src" -version = "111.25.2+1.1.1t" +version = "111.25.3+1.1.1t" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "320708a054ad9b3bf314688b5db87cf4d6683d64cfc835e2337924ae62bf4431" +checksum = "924757a6a226bf60da5f7dd0311a34d2b52283dd82ddeb103208ddc66362f80c" dependencies = [ "cc", ] [[package]] name = "openssl-sys" -version = "0.9.82" +version = "0.9.87" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a95792af3c4e0153c3914df2261bedd30a98476f94dc892b67dfe1d89d433a04" +checksum = "8e17f59264b2809d77ae94f0e1ebabc434773f370d6ca667bd223ea10e06cc7e" dependencies = [ - "autocfg", "cc", "libc", "openssl-src", @@ -3769,9 +3785,9 @@ dependencies = [ [[package]] name = "opentelemetry" -version = "0.18.0" +version = "0.19.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "69d6c3d7288a106c0a363e4b0e8d308058d56902adefb16f4936f417ffef086e" +checksum = "5f4b8347cc26099d3aeee044065ecc3ae11469796b4d65d065a23a584ed92a6f" dependencies = [ "opentelemetry_api", "opentelemetry_sdk", @@ -3779,9 +3795,9 @@ dependencies = [ [[package]] name = "opentelemetry-http" -version = "0.7.0" +version = "0.8.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1edc79add46364183ece1a4542592ca593e6421c60807232f5b8f7a31703825d" +checksum = "a819b71d6530c4297b49b3cae2939ab3a8cc1b9f382826a1bc29dd0ca3864906" dependencies = [ "async-trait", "bytes", @@ -3791,9 +3807,9 @@ dependencies = [ [[package]] name = "opentelemetry-otlp" -version = "0.11.0" +version = "0.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d1c928609d087790fc936a1067bdc310ae702bdf3b090c3f281b713622c8bbde" +checksum = "8af72d59a4484654ea8eb183fea5ae4eb6a41d7ac3e3bae5f4d2a282a3a7d3ca" dependencies = [ "async-trait", "futures", @@ -3809,39 +3825,38 @@ dependencies = [ [[package]] name = "opentelemetry-proto" -version = "0.1.0" +version = "0.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d61a2f56df5574508dd86aaca016c917489e589ece4141df1b5e349af8d66c28" +checksum = "045f8eea8c0fa19f7d48e7bc3128a39c2e5c533d5c61298c548dfefc1064474c" dependencies = [ "futures", "futures-util", "opentelemetry", "prost", "tonic", - "tonic-build", ] [[package]] name = "opentelemetry_api" -version = "0.18.0" +version = "0.19.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c24f96e21e7acc813c7a8394ee94978929db2bcc46cf6b5014fc612bf7760c22" +checksum = "ed41783a5bf567688eb38372f2b7a8530f5a607a4b49d38dd7573236c23ca7e2" dependencies = [ "fnv", "futures-channel", "futures-util", "indexmap", - "js-sys", "once_cell", "pin-project-lite", "thiserror", + "urlencoding", ] [[package]] name = "opentelemetry_sdk" -version = "0.18.0" +version = "0.19.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1ca41c4933371b61c2a2f214bf16931499af4ec90543604ec828f7a625c09113" +checksum = "8b3a2a91fdbfdd4d212c0dcc2ab540de2c2bcbbd90be17de7a7daf8822d010c1" dependencies = [ "async-trait", "crossbeam-channel", @@ -3860,6 +3875,12 @@ dependencies = [ ] [[package]] +name = "option-ext" +version = "0.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "04744f49eae99ab78e0d5c0b603ab218f515ea8cfe5a456d7629ad883a3b6e7d" + +[[package]] name = "ordered-float" version = "2.10.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3891,12 +3912,6 @@ dependencies = [ ] [[package]] -name = "os_str_bytes" -version = "6.5.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ceedf44fb00f2d1984b0bc98102627ce622e083e49a5bacdb3e514fa4238e267" - -[[package]] name = "output_vt100" version = "0.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3959,7 +3974,7 @@ dependencies = [ "cfg-if 1.0.0", "instant", "libc", - "redox_syscall", + "redox_syscall 0.2.16", "smallvec", "winapi", ] @@ -3972,7 +3987,7 @@ checksum = "9069cbb9f99e3a5083476ccb29ceb1de18b9118cafa53e90c9551235de2b9521" dependencies = [ "cfg-if 1.0.0", "libc", - "redox_syscall", + "redox_syscall 0.2.16", "smallvec", "windows-sys 0.45.0", ] @@ -4016,7 +4031,7 @@ version = "0.11.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "83a0692ec44e4cf1ef28ca317f14f8f07da2d95ec3fa01f86e4467b725e60917" dependencies = [ - "digest 0.10.6", + "digest 0.10.7", ] [[package]] @@ -4055,22 +4070,22 @@ dependencies = [ [[package]] name = "pin-project" -version = "1.0.12" +version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ad29a609b6bcd67fee905812e544992d216af9d755757c05ed2d0e15a74c6ecc" +checksum = "c95a7476719eab1e366eaf73d0260af3021184f18177925b07f54b30089ceead" dependencies = [ "pin-project-internal", ] [[package]] name = "pin-project-internal" -version = "1.0.12" +version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "069bdb1e05adc7a8990dce9cc75370895fbe4e3d58b9b73bf1aee56359344a55" +checksum = "39407670928234ebc5e6e580247dd567ad73a3578460c5990f9503df207e8f07" dependencies = [ "proc-macro2", "quote", - "syn 1.0.109", + "syn 2.0.16", ] [[package]] @@ -4096,9 +4111,9 @@ dependencies = [ [[package]] name = "pkcs8" -version = "0.10.1" +version = "0.10.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3d2820d87d2b008616e5c27212dd9e0e694fb4c6b522de06094106813328cb49" +checksum = "f950b2377845cebe5cf8b5165cb3cc1a5e0fa5cfa3e1f7f55707d8fd82e0a7b7" dependencies = [ "der", "spki", @@ -4106,15 +4121,24 @@ dependencies = [ [[package]] name = "pkg-config" -version = "0.3.26" +version = "0.3.27" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6ac9a59f73473f1b8d852421e59e64809f025994837ef743615c6d0c5b305160" +checksum = "26072860ba924cbfa98ea39c8c19b4dd6a4a25423dbdf219c1eca91aa0cf6964" [[package]] name = "portable-atomic" -version = "0.3.19" +version = "0.3.20" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e30165d31df606f5726b090ec7592c308a0eaf61721ff64c9a3018e344a8753e" +dependencies = [ + "portable-atomic 1.3.2", +] + +[[package]] +name = "portable-atomic" +version = "1.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "26f6a7b87c2e435a3241addceeeff740ff8b7e76b74c13bf9acb17fa454ea00b" +checksum = "dc59d1bcc64fc5d021d67521f818db868368028108d37f0e98d74e33f68297b5" [[package]] name = "portpicker" @@ -4133,9 +4157,9 @@ checksum = "5b40af805b3121feab8a3c29f04d8ad262fa8e0561883e7653e024ae4479e6de" [[package]] name = "predicates" -version = "3.0.1" +version = "3.0.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1ba7d6ead3e3966038f68caa9fc1f860185d95a793180bbcfe0d0da47b3961ed" +checksum = "09963355b9f467184c04017ced4a2ba2d75cbcb4e7462690d388233253d4b1a9" dependencies = [ "anstyle", "difflib", @@ -4183,9 +4207,9 @@ dependencies = [ [[package]] name = "primeorder" -version = "0.13.0" +version = "0.13.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7613fdcc0831c10060fa69833ea8fa2caa94b6456f51e25356a885b530a2e3d0" +checksum = "cf8d3875361e28f7753baefef104386e7aa47642c93023356d97fdef4003bfb5" dependencies = [ "elliptic-curve", ] @@ -4216,9 +4240,9 @@ dependencies = [ [[package]] name = "proc-macro2" -version = "1.0.53" +version = "1.0.58" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ba466839c78239c09faf015484e5cc04860f88242cff4d03eb038f04b4699b73" +checksum = "fa1fb82fc0c281dd9671101b66b771ebbe1eaf967b96ac8740dcba4b70005ca8" dependencies = [ "unicode-ident", ] @@ -4230,7 +4254,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "29f1b898011ce9595050a68e60f90bad083ff2987a695a42357134c8381fba70" dependencies = [ "bit-set", - "bitflags 1.3.2", + "bitflags", "byteorder", "lazy_static", "num-traits", @@ -4238,7 +4262,7 @@ dependencies = [ "rand", "rand_chacha", "rand_xorshift", - "regex-syntax", + "regex-syntax 0.6.29", "rusty-fork", "tempfile", "unarray", @@ -4246,9 +4270,9 @@ dependencies = [ [[package]] name = "prost" -version = "0.11.8" +version = "0.11.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e48e50df39172a3e7eb17e14642445da64996989bc212b583015435d39a58537" +checksum = "0b82eaa1d779e9a4bc1c3217db8ffbeabaae1dca241bf70183242128d48681cd" dependencies = [ "bytes", "prost-derive", @@ -4256,9 +4280,9 @@ dependencies = [ [[package]] name = "prost-build" -version = "0.11.8" +version = "0.11.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2c828f93f5ca4826f97fedcbd3f9a536c16b12cff3dbbb4a007f932bbad95b12" +checksum = "119533552c9a7ffacc21e099c24a0ac8bb19c2a2a3f363de84cd9b844feab270" dependencies = [ "bytes", "heck", @@ -4278,9 +4302,9 @@ dependencies = [ [[package]] name = "prost-derive" -version = "0.11.8" +version = "0.11.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4ea9b0f8cbe5e15a8a042d030bd96668db28ecb567ec37d691971ff5731d2b1b" +checksum = "e5d2d8d10f3c6ded6da8b05b5fb3b8a5082514344d56c9f871412d29b4e075b4" dependencies = [ "anyhow", "itertools", @@ -4291,9 +4315,9 @@ dependencies = [ [[package]] name = "prost-types" -version = "0.11.8" +version = "0.11.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "379119666929a1afd7a043aa6cf96fa67a6dce9af60c88095a4686dbce4c9c88" +checksum = "213622a1460818959ac1181aaeb2dc9c7f63df720db7d788b3e24eacd1983e13" dependencies = [ "prost", ] @@ -4313,7 +4337,7 @@ version = "0.8.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ffade02495f22453cd593159ea2f59827aae7f53fa8323f756799b670881dcf8" dependencies = [ - "bitflags 1.3.2", + "bitflags", "memchr", "unicase", ] @@ -4338,9 +4362,9 @@ checksum = "a993555f31e5a609f617c12db6250dedcac1b0a85076912c436e6fc9b2c8e6a3" [[package]] name = "quote" -version = "1.0.26" +version = "1.0.27" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4424af4bf778aae2051a77b60283332f386554255d722233d09fbfc7e30da2fc" +checksum = "8f4f29d145265ec1c483c7c654450edde0bfe043d3938d6972630663356d9500" dependencies = [ "proc-macro2", ] @@ -4401,9 +4425,9 @@ dependencies = [ [[package]] name = "raw-window-handle" -version = "0.5.1" +version = "0.5.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4f851a03551ceefd30132e447f07f96cb7011d6b658374f3aed847333adb5559" +checksum = "f2ff9a1f06a88b01621b7ae906ef0211290d1c8a168a15542486a8f61c0833b9" [[package]] name = "rayon" @@ -4445,7 +4469,16 @@ version = "0.2.16" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "fb5a58c1855b4b6819d59012155603f0b22ad30cad752600aadfcb695265519a" dependencies = [ - "bitflags 1.3.2", + "bitflags", +] + +[[package]] +name = "redox_syscall" +version = "0.3.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "567664f262709473930a4bf9e51bf2ebf3348f2e748ccc50dea20646858f8f29" +dependencies = [ + "bitflags", ] [[package]] @@ -4455,7 +4488,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "b033d837a7cf162d7993aded9304e30a83213c648b6e389db233191f891e5c2b" dependencies = [ "getrandom", - "redox_syscall", + "redox_syscall 0.2.16", "thiserror", ] @@ -4473,13 +4506,13 @@ dependencies = [ [[package]] name = "regex" -version = "1.7.2" +version = "1.8.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cce168fea28d3e05f158bda4576cf0c844d5045bc2cc3620fa0292ed5bb5814c" +checksum = "d1a59b5d8e97dee33696bf13c5ba8ab85341c002922fba050069326b9c498974" dependencies = [ - "aho-corasick", + "aho-corasick 1.0.1", "memchr", - "regex-syntax", + "regex-syntax 0.7.2", ] [[package]] @@ -4488,7 +4521,7 @@ version = "0.1.10" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6c230d73fb8d8c1b9c0b3135c5142a8acee3a0558fb8db5cf1cb65f8d7862132" dependencies = [ - "regex-syntax", + "regex-syntax 0.6.29", ] [[package]] @@ -4498,12 +4531,18 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f162c6dd7b008981e4d40210aca20b4bd0f9b60ca9271061b07f78537722f2e1" [[package]] +name = "regex-syntax" +version = "0.7.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "436b050e76ed2903236f032a59761c1eb99e1b0aead2c257922771dab1fc8c78" + +[[package]] name = "reqwest" -version = "0.11.15" +version = "0.11.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0ba30cc2c0cd02af1222ed216ba659cdb2f879dfe3181852fe7c50b1d0005949" +checksum = "cde824a14b7c14f85caff81225f411faacc04a2013f41670f41443742b1c1c55" dependencies = [ - "base64 0.21.0", + "base64 0.21.1", "bytes", "encoding_rs", "futures-core", @@ -4537,9 +4576,9 @@ dependencies = [ [[package]] name = "reqwest-middleware" -version = "0.2.1" +version = "0.2.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "99c50db2c7ccd815f976473dd7d0bde296f8c3b77c383acf4fc021cdcf10852b" +checksum = "4531c89d50effe1fac90d095c8b133c20c5c714204feee0bfc3fd158e784209d" dependencies = [ "anyhow", "async-trait", @@ -4691,9 +4730,9 @@ dependencies = [ [[package]] name = "rustc-demangle" -version = "0.1.21" +version = "0.1.23" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7ef03e0a2b150c7a90d01faf6254c9c48a41e95fb2a8c2ac1c6f0d2b9aefc342" +checksum = "d626bb9dae77e28219937af045c257c28bfd3f69333c512553507f5f9798cb76" [[package]] name = "rustc-hash" @@ -4758,18 +4797,32 @@ dependencies = [ [[package]] name = "rustix" -version = "0.36.11" +version = "0.36.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "db4165c9963ab29e422d6c26fbc1d37f15bace6b2810221f9d925023480fcf0e" +checksum = "14e4d67015953998ad0eb82887a0eb0129e18a7e2f3b7b0f6c422fddcd503d62" dependencies = [ - "bitflags 1.3.2", + "bitflags", + "errno", + "io-lifetimes", + "libc", + "linux-raw-sys 0.1.4", + "windows-sys 0.45.0", +] + +[[package]] +name = "rustix" +version = "0.37.19" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "acf8729d8542766f1b2cf77eb034d52f40d375bb8b615d0b147089946e16613d" +dependencies = [ + "bitflags", "errno", "io-lifetimes", "itoa", "libc", - "linux-raw-sys", + "linux-raw-sys 0.3.8", "once_cell", - "windows-sys 0.45.0", + "windows-sys 0.48.0", ] [[package]] @@ -4785,6 +4838,17 @@ dependencies = [ ] [[package]] +name = "rustls" +version = "0.21.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c911ba11bc8433e811ce56fde130ccf32f5127cab0e0194e9c68c5a5b671791e" +dependencies = [ + "ring", + "rustls-webpki", + "sct", +] + +[[package]] name = "rustls-native-certs" version = "0.6.2" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4802,17 +4866,27 @@ version = "1.0.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d194b56d58803a43635bdc398cd17e383d6f71f9182b9a192c127ca42494a59b" dependencies = [ - "base64 0.21.0", + "base64 0.21.1", +] + +[[package]] +name = "rustls-webpki" +version = "0.100.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d6207cd5ed3d8dca7816f8f3725513a34609c0c765bf652b8c3cb4cfd87db46b" +dependencies = [ + "ring", + "untrusted", ] [[package]] name = "rustrict" -version = "0.7.4" +version = "0.7.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "51873ee45dae28c00a079be7dd004fbf59991e0105d3508660ce8ca24da5dd85" +checksum = "4074b92c3fe398b8bc7b860a30dabda12539e876f6bbb4598c671fdddb3e3203" dependencies = [ "arrayvec 0.7.2", - "bitflags 1.3.2", + "bitflags", "doc-comment", "finl_unicode", "itertools", @@ -4871,12 +4945,6 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d29ab0c6d3fc0ee92fe66e2d99f700eab17a8d57d1c1d3b748380fb20baa78cd" [[package]] -name = "scratch" -version = "1.0.5" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1792db035ce95be60c3f8853017b3999209281c24e2ba5bc8e59bf97a0c590c1" - -[[package]] name = "sct" version = "0.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4888,9 +4956,9 @@ dependencies = [ [[package]] name = "sec1" -version = "0.7.1" +version = "0.7.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "48518a2b5775ba8ca5b46596aae011caa431e6ce7e4a67ead66d92f08884220e" +checksum = "f0aec48e813d6b90b15f0b8948af3c63483992dee44c03e9930b3eebdabe046e" dependencies = [ "base16ct", "der", @@ -4902,11 +4970,11 @@ dependencies = [ [[package]] name = "security-framework" -version = "2.8.2" +version = "2.9.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a332be01508d814fed64bf28f798a146d73792121129962fdf335bb3c49a4254" +checksum = "1fc758eb7bffce5b308734e9b0c1468893cae9ff70ebf13e7090be8dcbcc83a8" dependencies = [ - "bitflags 1.3.2", + "bitflags", "core-foundation", "core-foundation-sys", "libc", @@ -4915,9 +4983,9 @@ dependencies = [ [[package]] name = "security-framework-sys" -version = "2.8.0" +version = "2.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "31c9bb296072e961fcbd8853511dd39c2d8be2deb1e17c6860b1d30732b323b4" +checksum = "f51d0c0d83bec45f16480d0ce0058397a69e48fcdc52d1dc8855fb68acbd31a7" dependencies = [ "core-foundation-sys", "libc", @@ -4949,9 +5017,9 @@ checksum = "388a1df253eca08550bef6c72392cfe7c30914bf41df5269b68cbd6ff8f570a3" [[package]] name = "serde" -version = "1.0.158" +version = "1.0.163" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "771d4d9c4163ee138805e12c710dd365e4f44be8be0503cb1bb9eb989425d9c9" +checksum = "2113ab51b87a539ae008b5c6c02dc020ffa39afd2d83cffcb3f4eb2722cebec2" dependencies = [ "serde_derive", ] @@ -4977,13 +5045,13 @@ dependencies = [ [[package]] name = "serde_derive" -version = "1.0.158" +version = "1.0.163" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e801c1712f48475582b7696ac71e0ca34ebb30e09338425384269d9717c62cad" +checksum = "8c805777e3930c8883389c602315a24224bcc738b63905ef87cd1420353ea93e" dependencies = [ "proc-macro2", "quote", - "syn 2.0.5", + "syn 2.0.16", ] [[package]] @@ -4997,9 +5065,9 @@ dependencies = [ [[package]] name = "serde_json" -version = "1.0.94" +version = "1.0.96" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1c533a59c9d8a93a09c6ab31f0fd5e5f4dd1b8fc9434804029839884765d04ea" +checksum = "057d394a50403bcac12672b2b18fb387ab6d289d957dab67dd201875391e52f1" dependencies = [ "indexmap", "itoa", @@ -5024,14 +5092,14 @@ checksum = "bcec881020c684085e55a25f7fd888954d56609ef363479dc5a1305eb0d40cab" dependencies = [ "proc-macro2", "quote", - "syn 2.0.5", + "syn 2.0.16", ] [[package]] name = "serde_spanned" -version = "0.6.1" +version = "0.6.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0efd8caf556a6cebd3b285caf480045fcc1ac04f6bd786b09a6f11af30c4fcf4" +checksum = "93107647184f6027e3b7dcb2e11034cf95ffa1e3a682c67951963ac69c1c007d" dependencies = [ "serde", ] @@ -5060,9 +5128,9 @@ dependencies = [ [[package]] name = "serde_with" -version = "2.3.1" +version = "2.3.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "85456ffac572dc8826334164f2fb6fb40a7c766aebe195a2a21ee69ee2885ecf" +checksum = "07ff71d2c147a7b57362cead5e22f772cd52f6ab31cfcd9edcd7f6aeb2a0afbe" dependencies = [ "base64 0.13.1", "chrono", @@ -5093,7 +5161,7 @@ checksum = "f5058ada175748e33390e40e872bd0fe59a19f265d0158daa551c5a88a76009c" dependencies = [ "cfg-if 1.0.0", "cpufeatures", - "digest 0.10.6", + "digest 0.10.7", ] [[package]] @@ -5104,7 +5172,7 @@ checksum = "f04293dc80c3993519f2d7f6f511707ee7094fe0c6d3406feb330cdb3540eba3" dependencies = [ "cfg-if 1.0.0", "cpufeatures", - "digest 0.10.6", + "digest 0.10.7", ] [[package]] @@ -5128,7 +5196,7 @@ checksum = "82e6b795fe2e3b1e845bafcb27aa35405c4d47cdfc92af5fc8d3002f76cebdc0" dependencies = [ "cfg-if 1.0.0", "cpufeatures", - "digest 0.10.6", + "digest 0.10.7", ] [[package]] @@ -5163,11 +5231,11 @@ dependencies = [ [[package]] name = "shuttle-admin" -version = "0.16.0" +version = "0.18.0" dependencies = [ "anyhow", "clap", - "dirs 5.0.0", + "dirs 5.0.1", "reqwest", "serde", "serde_json", @@ -5180,12 +5248,12 @@ dependencies = [ [[package]] name = "shuttle-auth" -version = "0.16.0" +version = "0.18.0" dependencies = [ "anyhow", "async-trait", "axum", - "axum-extra 0.7.1", + "axum-extra 0.7.4", "axum-sessions", "clap", "http", @@ -5209,19 +5277,19 @@ dependencies = [ [[package]] name = "shuttle-codegen" -version = "0.16.0" +version = "0.18.0" dependencies = [ "pretty_assertions", "proc-macro-error", "proc-macro2", "quote", - "syn 2.0.5", + "syn 2.0.16", "trybuild", ] [[package]] name = "shuttle-common" -version = "0.16.2" +version = "0.18.0" dependencies = [ "anyhow", "async-trait", @@ -5270,7 +5338,7 @@ dependencies = [ [[package]] name = "shuttle-deployer" -version = "0.16.0" +version = "0.18.0" dependencies = [ "anyhow", "async-trait", @@ -5319,7 +5387,7 @@ dependencies = [ [[package]] name = "shuttle-gateway" -version = "0.16.0" +version = "0.18.0" dependencies = [ "anyhow", "async-trait", @@ -5348,7 +5416,7 @@ dependencies = [ "rand", "rcgen", "ring", - "rustls", + "rustls 0.20.8", "rustls-pemfile", "serde", "serde_json", @@ -5360,6 +5428,7 @@ dependencies = [ "tokio", "tower", "tower-http 0.4.0", + "tower-sanitize-path", "tracing", "tracing-opentelemetry", "tracing-subscriber", @@ -5372,7 +5441,7 @@ dependencies = [ [[package]] name = "shuttle-proto" -version = "0.16.0" +version = "0.18.0" dependencies = [ "anyhow", "chrono", @@ -5389,7 +5458,7 @@ dependencies = [ [[package]] name = "shuttle-provisioner" -version = "0.16.0" +version = "0.18.0" dependencies = [ "aws-config", "aws-sdk-rds", @@ -5415,7 +5484,7 @@ dependencies = [ [[package]] name = "shuttle-runtime" -version = "0.16.0" +version = "0.18.0" dependencies = [ "anyhow", "async-trait", @@ -5447,7 +5516,7 @@ dependencies = [ [[package]] name = "shuttle-service" -version = "0.16.0" +version = "0.18.0" dependencies = [ "anyhow", "async-trait", @@ -5497,11 +5566,11 @@ dependencies = [ [[package]] name = "signature" -version = "2.0.0" +version = "2.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8fe458c98333f9c8152221191a77e2a44e8325d0193484af2e9421a53019e57d" +checksum = "5e1788eed21689f9cf370582dfc467ef36ed9c707f073528ddafa8d83e3b8500" dependencies = [ - "digest 0.10.6", + "digest 0.10.7", "rand_core", ] @@ -5538,9 +5607,9 @@ dependencies = [ [[package]] name = "slice-group-by" -version = "0.3.0" +version = "0.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "03b634d87b960ab1a38c4fe143b508576f075e7c978bfad18217645ebfdfa2ec" +checksum = "826167069c09b99d56f31e9ae5c99049e932a98c9dc2dac47645b08dbbf76ba7" [[package]] name = "smallvec" @@ -5550,9 +5619,9 @@ checksum = "a507befe795404456341dfab10cef66ead4c041f62b8b11bbb92bffe5d0953e0" [[package]] name = "smol_str" -version = "0.1.24" +version = "0.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fad6c857cbab2627dcf01ec85a623ca4e7dcb5691cbaa3d7fb7653671f0d09c9" +checksum = "74212e6bbe9a4352329b2f68ba3130c15a3f26fe88ff22dbdc6cdd58fa85e99c" dependencies = [ "serde", ] @@ -5596,18 +5665,18 @@ checksum = "6e63cff320ae2c57904679ba7cb63280a3dc4613885beafb148ee7bf9aa9042d" [[package]] name = "spin" -version = "0.9.6" +version = "0.9.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b5d6e0250b93c8427a177b849d144a96d5acc57006149479403d7861ab721e34" +checksum = "6980e8d7511241f8acf4aebddbb1ff938df5eebe98691418c4468d0b72a96a67" dependencies = [ "lock_api", ] [[package]] name = "spki" -version = "0.7.0" +version = "0.7.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c0445c905640145c7ea8c1993555957f65e7c46d0535b91ba501bc9bfc85522f" +checksum = "9d1e996ef02c474957d681f1b05213dfb0abab947b446a62d37770b23500184a" dependencies = [ "base64ct", "der", @@ -5643,7 +5712,7 @@ dependencies = [ "ahash 0.7.6", "atoi", "base64 0.13.1", - "bitflags 1.3.2", + "bitflags", "byteorder", "bytes", "chrono", @@ -5815,9 +5884,9 @@ dependencies = [ [[package]] name = "syn" -version = "2.0.5" +version = "2.0.16" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "89c2d1c76a26822187a1fbb5964e3fff108bc208f02e820ab9dac1234f6b388a" +checksum = "a6f671d4b5ffdb8eadec19c0ae67fe2639df8684bd7bc4b83d986b8db549cf01" dependencies = [ "proc-macro2", "quote", @@ -5844,17 +5913,17 @@ dependencies = [ [[package]] name = "system-interface" -version = "0.25.4" +version = "0.25.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f355df185d945435f24c51fda9bf01bea6acb6c0b753e1241e5cc05413a659d4" +checksum = "928ebd55ab758962e230f51ca63735c5b283f26292297c81404289cda5d78631" dependencies = [ - "bitflags 1.3.2", + "bitflags", "cap-fs-ext", "cap-std", "fd-lock", "io-lifetimes", - "rustix", - "windows-sys 0.45.0", + "rustix 0.37.19", + "windows-sys 0.48.0", "winx", ] @@ -5883,9 +5952,9 @@ dependencies = [ [[package]] name = "target-lexicon" -version = "0.12.6" +version = "0.12.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8ae9980cab1db3fceee2f6c6f643d5d8de2997c58ee8d25fb0cc8a9e9e7348e5" +checksum = "fd1ba337640d60c3e96bc6f0638a939b9c9a7f2c316a1598c279828b3d1dc8c5" [[package]] name = "task-local-extensions" @@ -5898,15 +5967,15 @@ dependencies = [ [[package]] name = "tempfile" -version = "3.4.0" +version = "3.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "af18f7ae1acd354b992402e9ec5864359d693cd8a79dcbef59f76891701c1e95" +checksum = "b9fbec84f381d5795b08656e4912bec604d162bff9291d6189a78f4c8ab87998" dependencies = [ "cfg-if 1.0.0", "fastrand", - "redox_syscall", - "rustix", - "windows-sys 0.42.0", + "redox_syscall 0.3.5", + "rustix 0.37.19", + "windows-sys 0.45.0", ] [[package]] @@ -5920,12 +5989,12 @@ dependencies = [ [[package]] name = "terminal_size" -version = "0.2.5" +version = "0.2.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4c9afddd2cec1c0909f06b00ef33f94ab2cc0578c4a610aa208ddfec8aa2b43a" +checksum = "8e6bf6f19e9f8ed8d4048dc22981458ebcf406d67e94cd422e5ecd73d63b3237" dependencies = [ - "rustix", - "windows-sys 0.45.0", + "rustix 0.37.19", + "windows-sys 0.48.0", ] [[package]] @@ -5972,7 +6041,7 @@ checksum = "f9456a42c5b0d803c8cd86e73dd7cc9edd429499f37a3550d286d5e86720569f" dependencies = [ "proc-macro2", "quote", - "syn 2.0.5", + "syn 2.0.16", ] [[package]] @@ -5987,9 +6056,9 @@ dependencies = [ [[package]] name = "time" -version = "0.3.20" +version = "0.3.21" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cd0cbfecb4d19b5ea75bb31ad904eb5b9fa13f21079c3b92017ebdf4999a5890" +checksum = "8f3403384eaacbca9923fa06940178ac13e4edb725486d70e8e15881d0c836cc" dependencies = [ "itoa", "serde", @@ -5999,15 +6068,15 @@ dependencies = [ [[package]] name = "time-core" -version = "0.1.0" +version = "0.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2e153e1f1acaef8acc537e68b44906d2db6436e2b35ac2c6b42640fff91f00fd" +checksum = "7300fbefb4dadc1af235a9cef3737cea692a9d97e1b9cbcd4ebdae6f8868e6fb" [[package]] name = "time-macros" -version = "0.2.8" +version = "0.2.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fd80a657e71da814b8e5d60d3374fc6d35045062245d80224748ae522dd76f36" +checksum = "372950940a5f07bf38dbe211d7283c9e6d7327df53794992d293e534c733d09b" dependencies = [ "time-core", ] @@ -6029,14 +6098,13 @@ checksum = "1f3ccbac311fea05f86f61904b462b55fb3df8837a366dfc601a0161d0532f20" [[package]] name = "tokio" -version = "1.26.0" +version = "1.28.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "03201d01c3c27a29c8a5cee5b55a93ddae1ccf6f08f65365c2c918f8c1b76f64" +checksum = "0aa32867d44e6f2ce3385e89dceb990188b8bb0fb25b0cf576647a6f98ac5105" dependencies = [ "autocfg", "bytes", "libc", - "memchr", "mio", "num_cpus", "parking_lot 0.12.1", @@ -6044,7 +6112,7 @@ dependencies = [ "signal-hook-registry", "socket2", "tokio-macros", - "windows-sys 0.45.0", + "windows-sys 0.48.0", ] [[package]] @@ -6059,13 +6127,13 @@ dependencies = [ [[package]] name = "tokio-macros" -version = "1.8.2" +version = "2.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d266c00fde287f55d3f1c3e96c500c362a2b8c695076ec180f27918820bc6df8" +checksum = "630bdcf245f78637c13ec01ffae6187cca34625e8c63150d424b59e55af2675e" dependencies = [ "proc-macro2", "quote", - "syn 1.0.109", + "syn 2.0.16", ] [[package]] @@ -6084,16 +6152,26 @@ version = "0.23.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c43ee83903113e03984cb9e5cebe6c04a5116269e900e3ddba8f068a62adda59" dependencies = [ - "rustls", + "rustls 0.20.8", "tokio", "webpki", ] [[package]] +name = "tokio-rustls" +version = "0.24.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e0d409377ff5b1e3ca6437aa86c1eb7d40c134bfec254e44c830defa92669db5" +dependencies = [ + "rustls 0.21.1", + "tokio", +] + +[[package]] name = "tokio-stream" -version = "0.1.12" +version = "0.1.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8fb52b74f05dbf495a8fba459fdc331812b96aa086d9eb78101fa0d4569c3313" +checksum = "397c988d37662c7dda6d2208364a706264bf3d6138b11d436cbac0ad38832842" dependencies = [ "futures-core", "pin-project-lite", @@ -6129,9 +6207,9 @@ dependencies = [ [[package]] name = "tokio-util" -version = "0.7.7" +version = "0.7.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5427d89453009325de0d8f342c9490009f76e999cb7672d77e46267448f7e6b2" +checksum = "806fe8c2c87eccc8b3267cbae29ed3ab2d0bd37fca70ab622e46aaa9375ddb7d" dependencies = [ "bytes", "futures-core", @@ -6170,14 +6248,14 @@ dependencies = [ [[package]] name = "toml" -version = "0.7.3" +version = "0.7.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b403acf6f2bb0859c93c7f0d967cb4a75a7ac552100f9322faf64dc047669b21" +checksum = "d6135d499e69981f9ff0ef2167955a5333c35e36f6937d382974566b3d5b94ec" dependencies = [ "serde", "serde_spanned", - "toml_datetime 0.6.1", - "toml_edit 0.19.7", + "toml_datetime 0.6.2", + "toml_edit 0.19.9", ] [[package]] @@ -6191,9 +6269,9 @@ dependencies = [ [[package]] name = "toml_datetime" -version = "0.6.1" +version = "0.6.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3ab8ed2edee10b50132aed5f331333428b011c99402b5a534154ed15746f9622" +checksum = "5a76a9312f5ba4c2dec6b9161fdf25d87ad8a09256ccea5a556fef03c706a10f" dependencies = [ "serde", ] @@ -6226,14 +6304,14 @@ dependencies = [ [[package]] name = "toml_edit" -version = "0.19.7" +version = "0.19.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dc18466501acd8ac6a3f615dd29a3438f8ca6bb3b19537138b3106e575621274" +checksum = "92d964908cec0d030b812013af25a0e57fddfadb1e066ecc6681d86253129d4f" dependencies = [ "indexmap", "serde", "serde_spanned", - "toml_datetime 0.6.1", + "toml_datetime 0.6.2", "winnow", ] @@ -6308,7 +6386,7 @@ version = "0.2.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "aba3f3efabf7fb41fae8534fc20a817013dd1c12cb45441efb6c82e6556b4cd8" dependencies = [ - "bitflags 1.3.2", + "bitflags", "bytes", "futures-core", "futures-util", @@ -6326,7 +6404,7 @@ version = "0.3.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f873044bf02dd1e8239e9c1293ea39dad76dc594ec16185d0a1bf31d8dc8d858" dependencies = [ - "bitflags 1.3.2", + "bitflags", "bytes", "futures-core", "futures-util", @@ -6345,7 +6423,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5d1d42a9b3f3ec46ba828e8d376aec14592ea199f70a06a548587ecd1c4ab658" dependencies = [ "base64 0.20.0", - "bitflags 1.3.2", + "bitflags", "bytes", "futures-core", "futures-util", @@ -6366,6 +6444,18 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c20c8dbed6283a09604c3e69b4b7eeb54e298b8a600d4d5ecb5ad39de609f1d0" [[package]] +name = "tower-sanitize-path" +version = "0.1.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "3d4accf4be86b13057d30cd97f606c707b6ec8df01c2e91ee735f89de8216f21" +dependencies = [ + "http", + "tower-layer", + "tower-service", + "url-escape", +] + +[[package]] name = "tower-service" version = "0.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -6386,20 +6476,20 @@ dependencies = [ [[package]] name = "tracing-attributes" -version = "0.1.23" +version = "0.1.24" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4017f8f45139870ca7e672686113917c71c7a6e02d4924eda67186083c03081a" +checksum = "0f57e3ca2a01450b1a921183a9c9cbfda207fd822cef4ccb00a65402cbba7a74" dependencies = [ "proc-macro2", "quote", - "syn 1.0.109", + "syn 2.0.16", ] [[package]] name = "tracing-core" -version = "0.1.30" +version = "0.1.31" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "24eb03ba0eab1fd845050058ce5e616558e8f8d8fca633e6b163fe25c797213a" +checksum = "0955b8137a1df6f1a2e9a37d8a6656291ff0297c1a97c24e0d8425fe2312f79a" dependencies = [ "once_cell", "valuable", @@ -6439,9 +6529,9 @@ dependencies = [ [[package]] name = "tracing-opentelemetry" -version = "0.18.0" +version = "0.19.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "21ebb87a95ea13271332df069020513ab70bdb5637ca42d6e492dc3bbbad48de" +checksum = "00a39dcf9bfc1742fa4d6215253b33a6e474be78275884c216fc2a06267b3600" dependencies = [ "once_cell", "opentelemetry", @@ -6453,9 +6543,9 @@ dependencies = [ [[package]] name = "tracing-subscriber" -version = "0.3.16" +version = "0.3.17" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a6176eae26dd70d0c919749377897b54a9276bd7061339665dd68777926b5a70" +checksum = "30a651bc37f915e81f087d86e62a18eec5f79550c7faff886f7090b4ea757c77" dependencies = [ "matchers", "nu-ansi-term", @@ -6657,7 +6747,7 @@ dependencies = [ "log", "native-tls", "once_cell", - "rustls", + "rustls 0.20.8", "serde", "serde_json", "socks", @@ -6678,6 +6768,15 @@ dependencies = [ ] [[package]] +name = "url-escape" +version = "0.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "44e0ce4d1246d075ca5abec4b41d33e87a6054d08e2366b63205665e950db218" +dependencies = [ + "percent-encoding", +] + +[[package]] name = "urlencoding" version = "2.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -6697,9 +6796,9 @@ checksum = "711b9620af191e0cdc7468a8d14e709c3dcdb115b36f838e601583af800a370a" [[package]] name = "utoipa" -version = "3.2.1" +version = "3.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "24e7ee17c9ef094b86e1e04170d90765bd76cb381921dacb4d3e175a267bdae6" +checksum = "68ae74ef183fae36d650f063ae7bde1cacbe1cd7e72b617cbe1e985551878b98" dependencies = [ "indexmap", "serde", @@ -6709,14 +6808,14 @@ dependencies = [ [[package]] name = "utoipa-gen" -version = "3.2.1" +version = "3.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "df6f458e5abc811d44aca28455efc4163fb7565a7af2aa32d17611f3d1d9794d" +checksum = "7ea8ac818da7e746a63285594cce8a96f5e00ee31994e655bd827569cb8b137b" dependencies = [ "proc-macro-error", "proc-macro2", "quote", - "syn 2.0.5", + "syn 2.0.16", "uuid", ] @@ -6738,9 +6837,9 @@ dependencies = [ [[package]] name = "uuid" -version = "1.3.0" +version = "1.3.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1674845326ee10d37ca60470760d4288a6f80f304007d92e5c53bab78c9cfd79" +checksum = "345444e32442451b267fc254ae85a209c64be56d2890e601a0c37ff0c3c5ecd2" dependencies = [ "getrandom", "serde", @@ -6828,9 +6927,9 @@ checksum = "9c8d87e72b64a3b4db28d11ce29237c246188f4f51057d65a7eab63b7987e423" [[package]] name = "wasi-cap-std-sync" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "39c029a2dfc62195f26612e1f9de4c4207e4088ce48f84861229fa268021d1d0" +checksum = "20ef833092c0215e44f601591593cb3bf0853d5cd1e3104d698808dc525f2852" dependencies = [ "anyhow", "async-trait", @@ -6838,12 +6937,12 @@ dependencies = [ "cap-rand", "cap-std", "cap-time-ext", - "fs-set-times", + "fs-set-times 0.18.1", "io-extras", "io-lifetimes", "is-terminal", "once_cell", - "rustix", + "rustix 0.36.14", "system-interface", "tracing", "wasi-common", @@ -6852,17 +6951,17 @@ dependencies = [ [[package]] name = "wasi-common" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "be54f652e97bf4ffd98368386785ef80a70daf045ee307ec321be51b3ad7370c" +checksum = "474a216b3461220699d5e192ceac8fbc5b489af020760803b5a9d1e030dc8b0f" dependencies = [ "anyhow", - "bitflags 1.3.2", + "bitflags", "cap-rand", "cap-std", "io-extras", "log", - "rustix", + "rustix 0.36.14", "thiserror", "tracing", "wasmtime", @@ -6872,9 +6971,9 @@ dependencies = [ [[package]] name = "wasm-bindgen" -version = "0.2.84" +version = "0.2.86" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "31f8dcbc21f30d9b8f2ea926ecb58f6b91192c17e9d33594b3df58b2007ca53b" +checksum = "5bba0e8cb82ba49ff4e229459ff22a191bbe9a1cb3a341610c9c33efc27ddf73" dependencies = [ "cfg-if 1.0.0", "wasm-bindgen-macro", @@ -6882,24 +6981,24 @@ dependencies = [ [[package]] name = "wasm-bindgen-backend" -version = "0.2.84" +version = "0.2.86" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "95ce90fd5bcc06af55a641a86428ee4229e44e07033963a2290a8e241607ccb9" +checksum = "19b04bc93f9d6bdee709f6bd2118f57dd6679cf1176a1af464fca3ab0d66d8fb" dependencies = [ "bumpalo", "log", "once_cell", "proc-macro2", "quote", - "syn 1.0.109", + "syn 2.0.16", "wasm-bindgen-shared", ] [[package]] name = "wasm-bindgen-futures" -version = "0.4.34" +version = "0.4.36" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f219e0d211ba40266969f6dbdd90636da12f75bee4fc9d6c23d1260dadb51454" +checksum = "2d1985d03709c53167ce907ff394f5316aa22cb4e12761295c5dc57dacb6297e" dependencies = [ "cfg-if 1.0.0", "js-sys", @@ -6909,9 +7008,9 @@ dependencies = [ [[package]] name = "wasm-bindgen-macro" -version = "0.2.84" +version = "0.2.86" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4c21f77c0bedc37fd5dc21f897894a5ca01e7bb159884559461862ae90c0b4c5" +checksum = "14d6b024f1a526bb0234f52840389927257beb670610081360e5a03c5df9c258" dependencies = [ "quote", "wasm-bindgen-macro-support", @@ -6919,28 +7018,28 @@ dependencies = [ [[package]] name = "wasm-bindgen-macro-support" -version = "0.2.84" +version = "0.2.86" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2aff81306fcac3c7515ad4e177f521b5c9a15f2b08f4e32d823066102f35a5f6" +checksum = "e128beba882dd1eb6200e1dc92ae6c5dbaa4311aa7bb211ca035779e5efc39f8" dependencies = [ "proc-macro2", "quote", - "syn 1.0.109", + "syn 2.0.16", "wasm-bindgen-backend", "wasm-bindgen-shared", ] [[package]] name = "wasm-bindgen-shared" -version = "0.2.84" +version = "0.2.86" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0046fef7e28c3804e5e38bfa31ea2a0f73905319b677e57ebe37e49358989b5d" +checksum = "ed9d5b4305409d1fc9482fee2d7f9bcbf24b3972bf59817ef757e23982242a93" [[package]] name = "wasm-encoder" -version = "0.25.0" +version = "0.27.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4eff853c4f09eec94d76af527eddad4e9de13b11d6286a1ef7134bc30135a2b7" +checksum = "e77053dc709db790691d3732cfc458adc5acc881dec524965c608effdcd9c581" dependencies = [ "leb128", ] @@ -6972,9 +7071,9 @@ dependencies = [ [[package]] name = "wasmtime" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d137f87df6e037b2bcb960c2db7ea174e04fb897051380c14b5e5475a870669e" +checksum = "a15ac4b4bee3bcf3750911c7104cf50f12c6b1055cc491254c508294b019fd79" dependencies = [ "anyhow", "async-trait", @@ -7004,26 +7103,26 @@ dependencies = [ [[package]] name = "wasmtime-asm-macros" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ad63d4175d6af44af2046186c87deae4e9a8150b92de2d4809c6f745d5ee9b38" +checksum = "06f9859a704f6b807a3e2e3466ab727f3f748134a96712d0d27c48ba32b32992" dependencies = [ "cfg-if 1.0.0", ] [[package]] name = "wasmtime-cache" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f3055fb327f795b4639f47b9dadad9d3d9b185fd3001adf8db08f5fa06d07032" +checksum = "a66f6967ff6d89a4aa0abe11a145c7a2538f10d9dca6a0718dba6470166c8182" dependencies = [ "anyhow", - "base64 0.21.0", + "base64 0.21.1", "bincode", "directories-next", "file-per-thread-logger", "log", - "rustix", + "rustix 0.36.14", "serde", "sha2 0.10.6", "toml 0.5.11", @@ -7033,9 +7132,9 @@ dependencies = [ [[package]] name = "wasmtime-component-macro" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "64cf4906f990d6ab3065d042cf5a15eb7a2a5406d1c001a45ab9615de876458a" +checksum = "0f851a08ee7b76f74a51d1fd1ce22b139a40beb1792b4f903279c46b568eb1ec" dependencies = [ "anyhow", "proc-macro2", @@ -7048,15 +7147,15 @@ dependencies = [ [[package]] name = "wasmtime-component-util" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "22ccf49c18c1ce3f682310e642dcdc00ffc67f1ce0767c89a16fc8fcf5eaeb97" +checksum = "ddc0e0e733a8d097a137e05d5e7f62376600d32bd89bdc22c002d1826ae5af2e" [[package]] name = "wasmtime-cranelift" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "274590ecbb1179d45a5c8d9f54b9d236e9414d9ca3b861cd8956cec085508eb0" +checksum = "5f5ce3bc589c19cd055cc5210daaf77288563010f45cce40c58b57182b9b5bdd" dependencies = [ "anyhow", "cranelift-codegen", @@ -7075,9 +7174,9 @@ dependencies = [ [[package]] name = "wasmtime-environ" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "05b4a897e6ce1f2567ba98e7b1948c0e12cae1202fd88e7639f901b8ce9203f7" +checksum = "78a205f0f0ea33bcb56756718a9a9ca1042614237d6258893c519f6fed593325" dependencies = [ "anyhow", "cranelift-entity", @@ -7094,22 +7193,22 @@ dependencies = [ [[package]] name = "wasmtime-fiber" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "01b1192624694399f601de28db78975ed20fa859da8e048bf8250bd3b38d302b" +checksum = "d55f4f52b3f26b03e6774f2e6c41c72d4106175c58ddd0b74b4b4a81c1ba702c" dependencies = [ "cc", "cfg-if 1.0.0", - "rustix", + "rustix 0.36.14", "wasmtime-asm-macros", "windows-sys 0.45.0", ] [[package]] name = "wasmtime-jit" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f3f035bfe27ce5129c9d081d6288480f2e6ae9d16d0eb035a5d9e3b5b6c36658" +checksum = "2b111d642a32c858096a57456e503f6b72abdbd04d15b44e12f329c238802f66" dependencies = [ "addr2line", "anyhow", @@ -7132,20 +7231,20 @@ dependencies = [ [[package]] name = "wasmtime-jit-debug" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "17e35d335dd2461c631ba24d2326d993bd3a4bdb4b0217e5bda4f518ba0e29f3" +checksum = "e7da0f3ae2e2cefa9d28f3f11bcf7d956433a60ccb34f359cd8c930e2bf1cf5a" dependencies = [ "object", "once_cell", - "rustix", + "rustix 0.36.14", ] [[package]] name = "wasmtime-jit-icache-coherence" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4c8c01a070f55343f7afd309a9609c12378548b26c3f53c599bc711bb1ce42ee" +checksum = "52aab5839634bd3b158757b52bb689e04815023f2a83b281d657b3a0f061f7a0" dependencies = [ "cfg-if 1.0.0", "libc", @@ -7154,9 +7253,9 @@ dependencies = [ [[package]] name = "wasmtime-runtime" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1ac02cc14c8247f6e4e48c7653a79c226babac8f2cacdd933d3f15ca2a6ab20b" +checksum = "b738633d1c81b5df6f959757ac529b5c0f69ca917c1cfefac2e114af5c397014" dependencies = [ "anyhow", "cc", @@ -7169,7 +7268,7 @@ dependencies = [ "memoffset 0.8.0", "paste", "rand", - "rustix", + "rustix 0.36.14", "wasmtime-asm-macros", "wasmtime-environ", "wasmtime-fiber", @@ -7179,9 +7278,9 @@ dependencies = [ [[package]] name = "wasmtime-types" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c8dc0062ab053e1aa22d2355a2de4df482a0007fecae82ea02cc596c2329971d" +checksum = "dc565951214d0707de731561b84457e1200c545437a167f232e150c496295c6e" dependencies = [ "cranelift-entity", "serde", @@ -7191,9 +7290,9 @@ dependencies = [ [[package]] name = "wasmtime-wasi" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dc41b56ec1c032e4bb67cf0fe0b36443f7a8be341abce2e5ec9cc8ac6ef4bee0" +checksum = "3e94602bafb39e36746156127a97f4e33991fa02179f9f8e5b3372365ec61da8" dependencies = [ "anyhow", "libc", @@ -7205,9 +7304,9 @@ dependencies = [ [[package]] name = "wasmtime-wit-bindgen" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fd2cf93f3c8a6f443d8a9098fddc5fd887783c0fe725dc10c54ca9280546421d" +checksum = "0e1f2a35ff0a64ae07d4fcfd7c9b745e517be00ddb9991f8e2ad2c913cc11094" dependencies = [ "anyhow", "heck", @@ -7225,9 +7324,9 @@ dependencies = [ [[package]] name = "wast" -version = "55.0.0" +version = "58.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4984d3e1406571f4930ba5cf79bd70f75f41d0e87e17506e0bd19b0e5d085f05" +checksum = "372eecae2d10a5091c2005b32377d7ecd6feecdf2c05838056d02d8b4f07c429" dependencies = [ "leb128", "memchr", @@ -7237,18 +7336,18 @@ dependencies = [ [[package]] name = "wat" -version = "1.0.61" +version = "1.0.64" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "af2b53f4da14db05d32e70e9c617abdf6620c575bd5dd972b7400037b4df2091" +checksum = "6d47446190e112ab1579ab40b3ad7e319d859d74e5134683f04e9f0747bf4173" dependencies = [ - "wast 55.0.0", + "wast 58.0.0", ] [[package]] name = "web-sys" -version = "0.3.61" +version = "0.3.63" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e33b99f4b23ba3eec1a53ac264e35a755f00e966e0065077d6027c0f575b0b97" +checksum = "3bdd9ef4e984da1187bf8110c5cf5b845fbc87a23602cdf912386a76fcd3a7c2" dependencies = [ "js-sys", "wasm-bindgen", @@ -7256,12 +7355,12 @@ dependencies = [ [[package]] name = "webbrowser" -version = "0.8.8" +version = "0.8.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "579cc485bd5ce5bfa0d738e4921dd0b956eca9800be1fd2e5257ebe95bc4617e" +checksum = "fd222aa310eb7532e3fd427a5d7db7e44bc0b0cf1c1e21139c345325511a85b6" dependencies = [ "core-foundation", - "dirs 4.0.0", + "home", "jni", "log", "ndk-context", @@ -7319,13 +7418,13 @@ checksum = "17882f045410753661207383517a6f62ec3dbeb6a4ed2acce01f0728238d1983" [[package]] name = "wiggle" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "43991a6d0a435642831e40de3e412eb96950f1c9c72289e486db469ff7c4e53c" +checksum = "6627da83e9cdf851594a1dcf047573e700ecaa7ce79b70e02f3df5e5d24d0096" dependencies = [ "anyhow", "async-trait", - "bitflags 1.3.2", + "bitflags", "thiserror", "tracing", "wasmtime", @@ -7334,9 +7433,9 @@ dependencies = [ [[package]] name = "wiggle-generate" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "424062dad40b2020239ae2de27c962b5dfa6f36b9fe4ddfc3bcff3d5917d078f" +checksum = "0857652586aafc82fca56bbbf90fde5d5e086ffba58b0f1c0f113e54c500b55b" dependencies = [ "anyhow", "heck", @@ -7349,9 +7448,9 @@ dependencies = [ [[package]] name = "wiggle-macro" -version = "7.0.0" +version = "7.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7dc0c6a4cbe4f073e7e24c0452fc58c2775574f3b8c89703148d6308d2531b16" +checksum = "97189f1092c8877865aa64467ca99afd0182eb23ad1b4ce22319f18422543d55" dependencies = [ "proc-macro2", "quote", @@ -7392,11 +7491,11 @@ checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f" [[package]] name = "windows" -version = "0.46.0" +version = "0.48.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cdacb41e6a96a052c6cb63a144f24900236121c6f63f4f8219fef5977ecb0c25" +checksum = "e686886bc078bc1b0b600cac0147aadb815089b6e4da64016cbd754b6342700f" dependencies = [ - "windows-targets", + "windows-targets 0.48.0", ] [[package]] @@ -7405,13 +7504,13 @@ version = "0.42.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5a3e1820f08b8513f676f7ab6c1f99ff312fb97b553d30ff4dd86f9f15728aa7" dependencies = [ - "windows_aarch64_gnullvm", - "windows_aarch64_msvc", - "windows_i686_gnu", - "windows_i686_msvc", - "windows_x86_64_gnu", - "windows_x86_64_gnullvm", - "windows_x86_64_msvc", + "windows_aarch64_gnullvm 0.42.2", + "windows_aarch64_msvc 0.42.2", + "windows_i686_gnu 0.42.2", + "windows_i686_msvc 0.42.2", + "windows_x86_64_gnu 0.42.2", + "windows_x86_64_gnullvm 0.42.2", + "windows_x86_64_msvc 0.42.2", ] [[package]] @@ -7420,7 +7519,16 @@ version = "0.45.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "75283be5efb2831d37ea142365f009c02ec203cd29a3ebecbc093d52315b66d0" dependencies = [ - "windows-targets", + "windows-targets 0.42.2", +] + +[[package]] +name = "windows-sys" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "677d2418bec65e3338edb076e806bc1ec15693c5d0104683f2efe857f61056a9" +dependencies = [ + "windows-targets 0.48.0", ] [[package]] @@ -7429,13 +7537,28 @@ version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8e5180c00cd44c9b1c88adb3693291f1cd93605ded80c250a75d472756b4d071" dependencies = [ - "windows_aarch64_gnullvm", - "windows_aarch64_msvc", - "windows_i686_gnu", - "windows_i686_msvc", - "windows_x86_64_gnu", - "windows_x86_64_gnullvm", - "windows_x86_64_msvc", + "windows_aarch64_gnullvm 0.42.2", + "windows_aarch64_msvc 0.42.2", + "windows_i686_gnu 0.42.2", + "windows_i686_msvc 0.42.2", + "windows_x86_64_gnu 0.42.2", + "windows_x86_64_gnullvm 0.42.2", + "windows_x86_64_msvc 0.42.2", +] + +[[package]] +name = "windows-targets" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7b1eb6f0cd7c80c79759c929114ef071b87354ce476d9d94271031c0497adfd5" +dependencies = [ + "windows_aarch64_gnullvm 0.48.0", + "windows_aarch64_msvc 0.48.0", + "windows_i686_gnu 0.48.0", + "windows_i686_msvc 0.48.0", + "windows_x86_64_gnu 0.48.0", + "windows_x86_64_gnullvm 0.48.0", + "windows_x86_64_msvc 0.48.0", ] [[package]] @@ -7445,46 +7568,88 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "597a5118570b68bc08d8d59125332c54f1ba9d9adeedeef5b99b02ba2b0698f8" [[package]] +name = "windows_aarch64_gnullvm" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "91ae572e1b79dba883e0d315474df7305d12f569b400fcf90581b06062f7e1bc" + +[[package]] name = "windows_aarch64_msvc" version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e08e8864a60f06ef0d0ff4ba04124db8b0fb3be5776a5cd47641e942e58c4d43" [[package]] +name = "windows_aarch64_msvc" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b2ef27e0d7bdfcfc7b868b317c1d32c641a6fe4629c171b8928c7b08d98d7cf3" + +[[package]] name = "windows_i686_gnu" version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c61d927d8da41da96a81f029489353e68739737d3beca43145c8afec9a31a84f" [[package]] +name = "windows_i686_gnu" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "622a1962a7db830d6fd0a69683c80a18fda201879f0f447f065a3b7467daa241" + +[[package]] name = "windows_i686_msvc" version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "44d840b6ec649f480a41c8d80f9c65108b92d89345dd94027bfe06ac444d1060" [[package]] +name = "windows_i686_msvc" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "4542c6e364ce21bf45d69fdd2a8e455fa38d316158cfd43b3ac1c5b1b19f8e00" + +[[package]] name = "windows_x86_64_gnu" version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8de912b8b8feb55c064867cf047dda097f92d51efad5b491dfb98f6bbb70cb36" [[package]] +name = "windows_x86_64_gnu" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ca2b8a661f7628cbd23440e50b05d705db3686f894fc9580820623656af974b1" + +[[package]] name = "windows_x86_64_gnullvm" version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "26d41b46a36d453748aedef1486d5c7a85db22e56aff34643984ea85514e94a3" [[package]] +name = "windows_x86_64_gnullvm" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7896dbc1f41e08872e9d5e8f8baa8fdd2677f29468c4e156210174edc7f7b953" + +[[package]] name = "windows_x86_64_msvc" version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9aec5da331524158c6d1a4ac0ab1541149c0b9505fde06423b02f5ef0106b9f0" [[package]] +name = "windows_x86_64_msvc" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1a515f5799fe4961cb532f983ce2b23082366b898e52ffbce459c86f67c8378a" + +[[package]] name = "winnow" -version = "0.3.6" +version = "0.4.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "23d020b441f92996c80d94ae9166e8501e59c7bb56121189dc9eab3bd8216966" +checksum = "61de7bac303dc551fe038e2b3cef0f571087a47571ea6e79a87692ac99b99699" dependencies = [ "memchr", ] @@ -7500,13 +7665,13 @@ dependencies = [ [[package]] name = "winx" -version = "0.35.0" +version = "0.35.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "129cd8ee937d535e1a239d9d3c9c0525af0454bc0967d9211a251be062513520" +checksum = "1c52a121f0fbf9320d5f2a9a5d82f6cb7557eda5e8b47fc3e7f359ec866ae960" dependencies = [ - "bitflags 1.3.2", + "bitflags", "io-lifetimes", - "windows-sys 0.45.0", + "windows-sys 0.48.0", ] [[package]] @@ -7586,24 +7751,24 @@ checksum = "09041cd90cf85f7f8b2df60c646f853b7f535ce68f85244eb6731cf89fa498ec" [[package]] name = "yasna" -version = "0.5.1" +version = "0.5.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "aed2e7a52e3744ab4d0c05c20aa065258e84c49fd4226f5191b2ed29712710b4" +checksum = "e17bb3549cc1321ae1296b9cdc2698e2b6cb1992adfa19a8c72e5b7a738f44cd" dependencies = [ "time", ] [[package]] name = "zeroize" -version = "1.5.7" +version = "1.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c394b5bd0c6f669e7275d9c20aa90ae064cb22e75a1cad54e1b34088034b149f" +checksum = "2a0956f1ba7c7909bfb66c2e9e4124ab6f6482560f6628b5aaeba39207c9aad9" [[package]] name = "zip" -version = "0.6.4" +version = "0.6.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0445d0fbc924bb93539b4316c11afb121ea39296f99a3c4c9edad09e3658cdef" +checksum = "760394e246e4c28189f19d488c058bf16f564016aefac5d32bb1f3b51d5e9261" dependencies = [ "byteorder", "crc32fast", @@ -7632,9 +7797,9 @@ dependencies = [ [[package]] name = "zstd-sys" -version = "2.0.7+zstd.1.5.4" +version = "2.0.8+zstd.1.5.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "94509c3ba2fe55294d752b79842c530ccfab760192521df74a081a78d2b3c7f5" +checksum = "5556e6ee25d32df2586c098bbfa278803692a20d0ab9565e049480d52707ec8c" dependencies = [ "cc", "libc", diff --git a/pkgs/development/tools/rust/cargo-shuttle/default.nix b/pkgs/development/tools/rust/cargo-shuttle/default.nix index 8e179b13ef52d..4eec6053880ea 100644 --- a/pkgs/development/tools/rust/cargo-shuttle/default.nix +++ b/pkgs/development/tools/rust/cargo-shuttle/default.nix @@ -12,13 +12,13 @@ rustPlatform.buildRustPackage rec { pname = "cargo-shuttle"; - version = "0.17.0"; + version = "0.18.0"; src = fetchFromGitHub { owner = "shuttle-hq"; repo = "shuttle"; rev = "v${version}"; - hash = "sha256-w2PkrkHMthGRqWW8PQIoRY41S3qPib5JDKDV6I6ESAw="; + hash = "sha256-8i7iYJ9j3NP7otA6d0ow9S6aV2TGxKtYlGS0FXTXUbM="; }; cargoLock = { @@ -51,11 +51,6 @@ rustPlatform.buildRustPackage rec { "init::shuttle_init_tests::" ]; - # Cargo.lock is outdated - preConfigure = '' - cargo metadata --offline - ''; - meta = with lib; { description = "A cargo command for the shuttle platform"; homepage = "https://shuttle.rs"; diff --git a/pkgs/development/tools/rust/cargo-workspaces/default.nix b/pkgs/development/tools/rust/cargo-workspaces/default.nix index ed0eec126d8ce..f473dc5a12795 100644 --- a/pkgs/development/tools/rust/cargo-workspaces/default.nix +++ b/pkgs/development/tools/rust/cargo-workspaces/default.nix @@ -5,7 +5,6 @@ , openssl , zlib , stdenv -, darwin , libssh2 , libgit2 , IOKit @@ -25,7 +24,6 @@ rustPlatform.buildRustPackage rec { }; cargoSha256 = "sha256-wUVNsUx7JS5icjxbz3CV1lNUvuuL+gTL2QzuE+030WU="; - verifyCargoDeps = true; # needed to get libssh2/libgit2 to link properly LIBGIT2_SYS_USE_PKG_CONFIG = true; diff --git a/pkgs/development/tools/rust/duckscript/default.nix b/pkgs/development/tools/rust/duckscript/default.nix index 683ef150c709d..5691823ae25a1 100644 --- a/pkgs/development/tools/rust/duckscript/default.nix +++ b/pkgs/development/tools/rust/duckscript/default.nix @@ -13,11 +13,11 @@ rustPlatform.buildRustPackage rec { pname = "duckscript_cli"; - version = "0.8.18"; + version = "0.8.19"; src = fetchCrate { inherit pname version; - sha256 = "sha256-AbdGyRCeypmsBc2QdR4Tdl3MeUlK9xmNmB63axpUfFI="; + sha256 = "sha256-lIev80us8+XlS6opyTViWEcueisEJfSaXfbxLLvdVCo="; }; nativeBuildInputs = [ pkg-config ]; @@ -25,7 +25,7 @@ rustPlatform.buildRustPackage rec { buildInputs = [ openssl ] ++ lib.optionals stdenv.isDarwin [ Security SystemConfiguration libiconv ]; - cargoHash = "sha256-Exsgt1yV3EiEewzDU4YLhSYGpzr4t2o5hm3evyAkO44="; + cargoHash = "sha256-YtPCfoHxKiVXEpWwQRf2zHGZ8nIKN0hx5p50j0dS/Xw="; meta = with lib; { description = "Simple, extendable and embeddable scripting language."; diff --git a/pkgs/development/tools/rust/maturin/default.nix b/pkgs/development/tools/rust/maturin/default.nix index 8e4a75cbf9bca..27691c748a9ae 100644 --- a/pkgs/development/tools/rust/maturin/default.nix +++ b/pkgs/development/tools/rust/maturin/default.nix @@ -11,18 +11,18 @@ rustPlatform.buildRustPackage rec { pname = "maturin"; - version = "0.14.17"; + version = "1.0.1"; src = fetchFromGitHub { owner = "PyO3"; repo = "maturin"; rev = "v${version}"; - hash = "sha256-Qvk9Pde1xmQ/lqU6KCda+F6UV7b414TDswP5Cwrh4jc="; + hash = "sha256-iVN6LpikU+TP4P9ZJUVQR/ZNkRHjYLgdDA0aQeWMZfA="; }; - cargoHash = "sha256-mPpM8jVDA9TbdNR1AdAzVP6sd2glUpDKhyVaaCcQzKE="; + cargoHash = "sha256-iX4cbZ0PV0/o42f1QKNlAkwHEif2fu+RvhdzH7tWOZE="; - nativeBuildInputs = [ pkg-config ]; + nativeBuildInputs = lib.optionals stdenv.isLinux [ pkg-config ]; buildInputs = lib.optionals stdenv.isLinux [ dbus ] ++ lib.optionals stdenv.isDarwin [ Security libiconv ]; @@ -43,7 +43,8 @@ rustPlatform.buildRustPackage rec { Python and can upload them to PyPI. ''; homepage = "https://github.com/PyO3/maturin"; - license = licenses.asl20; + changelog = "https://github.com/PyO3/maturin/blob/v${version}/Changelog.md"; + license = with licenses; [ asl20 /* or */ mit ]; maintainers = [ ]; }; } diff --git a/pkgs/development/tools/rust/rust-analyzer/default.nix b/pkgs/development/tools/rust/rust-analyzer/default.nix index 7eae0d0d55ed6..7cdba5adbc885 100644 --- a/pkgs/development/tools/rust/rust-analyzer/default.nix +++ b/pkgs/development/tools/rust/rust-analyzer/default.nix @@ -13,14 +13,14 @@ rustPlatform.buildRustPackage rec { pname = "rust-analyzer-unwrapped"; - version = "2023-05-22"; - cargoSha256 = "sha256-44UNNHOegP2Q1THPnEa37etedwstQbnB2Gr3dF39ZXU="; + version = "2023-05-29"; + cargoSha256 = "sha256-Qsr+cpggftYR9JL1y3ZgmuNSNsyBeQVVr+pt3R9/gm8="; src = fetchFromGitHub { owner = "rust-lang"; repo = "rust-analyzer"; rev = version; - sha256 = "sha256-xDUpgRcACQQREemfVQnft6AImqF2+dbxmHupw6gzSho="; + sha256 = "sha256-8fOFw6B9lDUt4slKAGHj6Bipi5or7nNQvOB9vvN2R9U="; }; cargoBuildFlags = [ "--bin" "rust-analyzer" "--bin" "rust-analyzer-proc-macro-srv" ]; diff --git a/pkgs/development/tools/rust/svd2rust/default.nix b/pkgs/development/tools/rust/svd2rust/default.nix index 516fab607ccd4..abbaf78961c9b 100644 --- a/pkgs/development/tools/rust/svd2rust/default.nix +++ b/pkgs/development/tools/rust/svd2rust/default.nix @@ -2,14 +2,14 @@ rustPlatform.buildRustPackage rec { pname = "svd2rust"; - version = "0.28.0"; + version = "0.29.0"; src = fetchCrate { inherit pname version; - sha256 = "sha256-/Pt0eKS6Rfrh18nb1lR/T+T+b73rmX4jmGIjbXJtcMA="; + sha256 = "sha256-VxjoS93OwJAc9Cb0VL9R/49pAcXPYrzC7q6vYJSDYB4="; }; - cargoSha256 = "sha256-Vum7Ltq9h6BMXvIESO9jC2B775BZlCWmatazk1bavQs="; + cargoHash = "sha256-f8dht3HCgzeTfyhFhJS2F+TL5Y0qi+A5PGZkNXF1AUw="; meta = with lib; { description = "Generate Rust register maps (`struct`s) from SVD files"; diff --git a/pkgs/development/tools/rye/Cargo.lock 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"dialoguer-0.10.4" = "sha256-WDqUKOu7Y0HElpPxf2T8EpzAY3mY8sSn9lf0V0jyAFc="; + }; + }; + + env = { + OPENSSL_NO_VENDOR = 1; + }; nativeBuildInputs = [ pkg-config ]; buildInputs = [ + git openssl ] ++ lib.optional stdenv.isDarwin SystemConfiguration; + nativeCheckInputs = [ git ]; + meta = with lib; { description = "A tool to easily manage python dependencies and environments"; homepage = "https://github.com/mitsuhiko/rye"; diff --git a/pkgs/development/tools/skaffold/default.nix b/pkgs/development/tools/skaffold/default.nix index 1c7d7c594ca5f..acd2ddd865a81 100644 --- a/pkgs/development/tools/skaffold/default.nix +++ b/pkgs/development/tools/skaffold/default.nix @@ -1,14 +1,14 @@ -{ lib, buildGoModule, fetchFromGitHub, installShellFiles }: +{ lib, buildGoModule, fetchFromGitHub, installShellFiles, makeWrapper }: buildGoModule rec { pname = "skaffold"; - version = "2.4.1"; + version = "2.5.0"; src = fetchFromGitHub { owner = "GoogleContainerTools"; repo = "skaffold"; rev = "v${version}"; - hash = "sha256-0sOj5U9GFDFOs6uvgGHQfRFLlAoGk1DwRW4kN0lOIK0="; + hash = "sha256-nCJcgWVQeX5QsMyH117PWBBW+7H5ZigjDxPmiaYER1Y="; }; vendorHash = null; @@ -22,7 +22,7 @@ buildGoModule rec { "-X ${t}/version.buildDate=unknown" ]; - nativeBuildInputs = [ installShellFiles ]; + nativeBuildInputs = [ installShellFiles makeWrapper ]; doInstallCheck = true; installCheckPhase = '' @@ -30,6 +30,8 @@ buildGoModule rec { ''; postInstall = '' + wrapProgram $out/bin/skaffold --set SKAFFOLD_UPDATE_CHECK false + installShellCompletion --cmd skaffold \ --bash <($out/bin/skaffold completion bash) \ --zsh <($out/bin/skaffold completion zsh) diff --git a/pkgs/development/tools/sq/default.nix b/pkgs/development/tools/sq/default.nix index d5be7ed0a2864..d66623c057b3f 100644 --- a/pkgs/development/tools/sq/default.nix +++ b/pkgs/development/tools/sq/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "sq"; - version = "0.35.0"; + version = "0.36.2"; src = fetchFromGitHub { owner = "neilotoole"; repo = pname; rev = "v${version}"; - sha256 = "sha256-yCV/vn6c1FeHhPM+YCS6tr8M45SZiytrDjdocKVJ5Mk="; + sha256 = "sha256-EuNB39FcpkFHWgyQkOTqm5WUTEHHgmuqssM2qLycvTM="; }; - vendorHash = "sha256-SOnYK9JtP1V8Y6/GszU26kYM1e2xupBmHsJrVpRT2vc="; + vendorHash = "sha256-nzXYKV3pZToh9UzCTADpzZQNmfEAL4lshJmC/sj0zs0="; proxyVendor = true; diff --git a/pkgs/development/tools/supabase-cli/default.nix b/pkgs/development/tools/supabase-cli/default.nix index 54d3149b1d48d..e12122ddb0c32 100644 --- a/pkgs/development/tools/supabase-cli/default.nix +++ b/pkgs/development/tools/supabase-cli/default.nix @@ -9,16 +9,16 @@ buildGoModule rec { pname = "supabase-cli"; - version = "1.64.2"; + version = "1.64.8"; src = fetchFromGitHub { owner = "supabase"; repo = "cli"; rev = "v${version}"; - sha256 = "sha256-xqH4twh65nOcB+IqqYjGRdbCYC7MZjAVKeIJARGTG3U="; + sha256 = "sha256-ueOOEiJ6NWwBaSarXWiAZLnNZg/1RM9Tej602selbC8="; }; - vendorSha256 = "sha256-sQ4lJKQaSUWlet3dEnD8bKLYtkEtdnLuGHVfqCTdFyg="; + vendorSha256 = "sha256-dNK8ZqV6Cr88BsGWQEU8uAzi+eOQh0IhKpKmjUbrViA="; ldflags = [ "-s" diff --git a/pkgs/development/tools/toast/default.nix b/pkgs/development/tools/toast/default.nix index 87343ed789b84..7db2dcab59461 100644 --- a/pkgs/development/tools/toast/default.nix +++ b/pkgs/development/tools/toast/default.nix @@ -5,16 +5,16 @@ rustPlatform.buildRustPackage rec { pname = "toast"; - version = "0.47.3"; + version = "0.47.4"; src = fetchFromGitHub { owner = "stepchowfun"; repo = pname; rev = "v${version}"; - sha256 = "sha256-rPS0jLlfZFeSHY/zdD1mAPm+00UPJAQuPnK7/hCHeGg="; + sha256 = "sha256-9uIZPmvjRjR9rRVp+rfLEjp6yDmf+87OglKqOwlRSEQ="; }; - cargoHash = "sha256-zCM9h4sJlfeXKyNy5LWrPaAmo2+/um0WSoJcYchYa/E="; + cargoHash = "sha256-cO2mO7ZtFuoIs58Y53xb4q+Cr5V94WTEgYkOYB0aGvY="; checkFlags = [ "--skip=format::tests::code_str_display" ]; # fails diff --git a/pkgs/development/tools/typos/default.nix b/pkgs/development/tools/typos/default.nix index 57fc89d708741..eeb0179d21032 100644 --- 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"windows_aarch64_gnullvm", + "windows_aarch64_msvc 0.42.0", + "windows_i686_gnu 0.42.0", + "windows_i686_msvc 0.42.0", + "windows_x86_64_gnu 0.42.0", + "windows_x86_64_gnullvm", + "windows_x86_64_msvc 0.42.0", +] + +[[package]] +name = "windows_aarch64_gnullvm" +version = "0.42.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "41d2aa71f6f0cbe00ae5167d90ef3cfe66527d6f613ca78ac8024c3ccab9a19e" + +[[package]] +name = "windows_aarch64_msvc" +version = "0.36.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9bb8c3fd39ade2d67e9874ac4f3db21f0d710bee00fe7cab16949ec184eeaa47" + +[[package]] +name = "windows_aarch64_msvc" +version = "0.42.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "dd0f252f5a35cac83d6311b2e795981f5ee6e67eb1f9a7f64eb4500fbc4dcdb4" + +[[package]] +name = "windows_i686_gnu" +version = "0.36.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "180e6ccf01daf4c426b846dfc66db1fc518f074baa793aa7d9b9aaeffad6a3b6" + +[[package]] +name = "windows_i686_gnu" +version = "0.42.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "fbeae19f6716841636c28d695375df17562ca208b2b7d0dc47635a50ae6c5de7" + +[[package]] +name = "windows_i686_msvc" +version = "0.36.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e2e7917148b2812d1eeafaeb22a97e4813dfa60a3f8f78ebe204bcc88f12f024" + +[[package]] +name = "windows_i686_msvc" +version = "0.42.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "84c12f65daa39dd2babe6e442988fc329d6243fdce47d7d2d155b8d874862246" + +[[package]] +name = "windows_x86_64_gnu" +version = "0.36.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "4dcd171b8776c41b97521e5da127a2d86ad280114807d0b2ab1e462bc764d9e1" + +[[package]] +name = "windows_x86_64_gnu" +version = "0.42.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "bf7b1b21b5362cbc318f686150e5bcea75ecedc74dd157d874d754a2ca44b0ed" + +[[package]] +name = "windows_x86_64_gnullvm" +version = "0.42.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "09d525d2ba30eeb3297665bd434a54297e4170c7f1a44cad4ef58095b4cd2028" + +[[package]] +name = "windows_x86_64_msvc" +version = "0.36.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c811ca4a8c853ef420abd8592ba53ddbbac90410fab6903b3e79972a631f7680" + +[[package]] +name = "windows_x86_64_msvc" +version = "0.42.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f40009d85759725a34da6d89a94e63d7bdc50a862acf0dbc7c8e488f1edcb6f5" + +[[package]] +name = "winreg" +version = "0.10.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "80d0f4e272c85def139476380b12f9ac60926689dd2e01d4923222f40580869d" +dependencies = [ + "winapi", +] + +[[package]] +name = "xattr" +version = "0.2.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "244c3741f4240ef46274860397c7c74e50eb23624996930e484c16679633a54c" +dependencies = [ + "libc", +] + +[[package]] +name = "zip" +version = "0.2.8" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e7341988e4535c60882d5e5f0b7ad0a9a56b080ade8bdb5527cb512f7b2180e0" +dependencies = [ + "bzip2", + "flate2", + "msdos_time", + "podio", + "time", +] diff --git a/pkgs/development/tools/volta/default.nix b/pkgs/development/tools/volta/default.nix new file mode 100644 index 0000000000000..125c396d1a28a --- /dev/null +++ b/pkgs/development/tools/volta/default.nix @@ -0,0 +1,55 @@ +{ + lib, + rustPlatform, + libiconv, + stdenv, + installShellFiles, + darwin, + fetchFromGitHub, +}: +rustPlatform.buildRustPackage rec { + pname = "volta"; + version = "1.1.1"; + + src = fetchFromGitHub { + owner = "volta-cli"; + repo = "volta"; + rev = "v${version}"; + hash = "sha256-+j3WRpunV+3YfZnyuKA/CsiKr+gOaP2NbmnyoGMN+Mg="; + }; + + cargoLock = { + lockFile = ./Cargo.lock; + outputHashes = { + "detect-indent-0.1.0" = "sha256-qtPkPaBiyuT8GhpEFdU7IkAgKnCbTES0FB2CvNKWqic="; + "semver-0.9.0" = "sha256-nw1somkZe9Qi36vjfWlTcDqHAIbaJj72KBTfmucVxXs="; + "semver-parser-0.10.0" = "sha256-iTGnKSddsriF6JS6lvJNjp9aDzGtfjrHEiCijeie3uE="; + }; + }; + + buildInputs = [ installShellFiles ] + ++ lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.Security libiconv ]; + + HOME = "$TMPDIR"; + + postInstall = '' + installShellCompletion --cmd volta \ + --bash <($out/bin/volta completions bash) \ + --fish <($out/bin/volta completions fish) \ + --zsh <($out/bin/volta completions zsh) + ''; + meta = with lib; { + description = "The Hassle-Free JavaScript Tool Manager"; + longDescription = '' + With Volta, you can select a Node engine once and then stop worrying + about it. You can switch between projects and stop having to manually + switch between Nodes. You can install npm package binaries in your + toolchain without having to periodically reinstall them or figure out why + they’ve stopped working. + ''; + homepage = "https://volta.sh/"; + changelog = "https://github.com/volta-cli/volta/blob/main/RELEASES.md"; + license = with licenses; [ bsd2 ]; + maintainers = with maintainers; [ fbrs ]; + }; +} diff --git a/pkgs/development/tools/worker-build/default.nix b/pkgs/development/tools/worker-build/default.nix index 356f035319455..54f5f0191b43d 100644 --- a/pkgs/development/tools/worker-build/default.nix +++ b/pkgs/development/tools/worker-build/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "worker-build"; - version = "0.0.16"; + version = "0.0.17"; src = fetchFromGitHub { owner = "cloudflare"; repo = "workers-rs"; rev = "v${version}"; - sha256 = "sha256-8+ifSCfHYrS5iAa4fsujmofzicbwk/00VRNZvIkIc+E="; + sha256 = "sha256-siKIE+RHAnZ8Lj3kWg7jEVo5t10dqc59OMrro26ClWo="; }; - cargoHash = "sha256-fj/l53AdgJXYz+IA45yfNYgSw7DKbBrGVyFCfbqxxq0="; + cargoHash = "sha256-j6WG8pRM6fIvMeXDdkjzRREE9tIug0w+UwWdOmPao4U="; buildInputs = lib.optionals stdenv.isDarwin [ Security ]; diff --git a/pkgs/development/tools/zed/default.nix b/pkgs/development/tools/zed/default.nix index be359b0496e22..98e7f37e5c198 100644 --- a/pkgs/development/tools/zed/default.nix +++ b/pkgs/development/tools/zed/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "zed"; - version = "1.7.0"; + version = "1.8.1"; src = fetchFromGitHub { owner = "brimdata"; repo = pname; rev = "v${version}"; - sha256 = "sha256-laqHFrRp83IE75RgAmxxTsq7c48RDapAJQFXWI1NO2o="; + sha256 = "sha256-3YLQi/9YTUDyprlSjzCACffF6eXwLbmfsU/LPhEriqA="; }; - vendorHash = "sha256-Uy8GR+mNVElx+MOu8IxHjBhp1GT5nLqqizQH9q1s0wA="; + vendorHash = "sha256-n/7HV3dyV8qsJeEk+vikZvuM5G7nf0QOwVBtInJdU2k="; subPackages = [ "cmd/zed" "cmd/zq" ]; diff --git a/pkgs/development/tools/zprint/default.nix b/pkgs/development/tools/zprint/default.nix index f93098aebfe24..74b0db2bb9d71 100644 --- a/pkgs/development/tools/zprint/default.nix +++ b/pkgs/development/tools/zprint/default.nix @@ -2,11 +2,11 @@ buildGraalvmNativeImage rec { pname = "zprint"; - version = "1.2.5"; + version = "1.2.6"; src = fetchurl { url = "https://github.com/kkinnear/${pname}/releases/download/${version}/${pname}-filter-${version}"; - sha256 = "sha256-PWdR5jqyzvTk9HoxqDldwtZNik34dmebBtZZ5vtva4A="; + sha256 = "sha256-mzhl7boAMKZ5bj184LLCWR/faDjJI+crX4Vzbh7eosY="; }; extraNativeImageBuildArgs = [ diff --git a/pkgs/development/web/bun/default.nix b/pkgs/development/web/bun/default.nix index e89bdcdf11110..1555933142c9e 100644 --- a/pkgs/development/web/bun/default.nix +++ b/pkgs/development/web/bun/default.nix @@ -12,7 +12,7 @@ }: stdenvNoCC.mkDerivation rec { - version = "0.6.3"; + version = "0.6.7"; pname = "bun"; src = passthru.sources.${stdenvNoCC.hostPlatform.system} or (throw "Unsupported system: ${stdenvNoCC.hostPlatform.system}"); @@ -33,19 +33,19 @@ stdenvNoCC.mkDerivation rec { sources = { "aarch64-darwin" = fetchurl { url = "https://github.com/oven-sh/bun/releases/download/bun-v${version}/bun-darwin-aarch64.zip"; - sha256 = "u2sgfejY9I6zjpo30H63Pf8FrnI9yzvKZKdVCEwuMJo="; + sha256 = "g3DuKv8K2+PtMkLb5wK4m85tMsB5z7KzgJwWsFJ9abg="; }; "aarch64-linux" = fetchurl { url = "https://github.com/oven-sh/bun/releases/download/bun-v${version}/bun-linux-aarch64.zip"; - sha256 = "fGq9m17WZ382UOROpAHUuk21mU1WhgmzQDUAb0RpGfo="; + sha256 = "P5dK+uWiZZ0F3hy40oiNKnFOQTcHHrl3QcIMIXKFp5I="; }; "x86_64-darwin" = fetchurl { url = "https://github.com/oven-sh/bun/releases/download/bun-v${version}/bun-darwin-x64.zip"; - sha256 = "npRAY3ffTDd5uOcHGoKksD5mDHPBqYAqxuuQKd4PC3Q="; + sha256 = "uOqUagzkvJ1vcxgDLkTdJanzFpSdOT9HqBa+0EMKy1U="; }; "x86_64-linux" = fetchurl { url = "https://github.com/oven-sh/bun/releases/download/bun-v${version}/bun-linux-x64.zip"; - sha256 = "UBrNOjrK+40OlkiFT8d8oav/2ZSAaz0xWYCalGtahs8="; + sha256 = "bX3gV3wR2ZJabP6LXT4Tg3T+061aghktXD2YOrQfmWo="; }; }; updateScript = writeShellScript "update-bun" '' diff --git a/pkgs/development/web/deno/default.nix b/pkgs/development/web/deno/default.nix index 696558519da58..6363906772d34 100644 --- a/pkgs/development/web/deno/default.nix +++ b/pkgs/development/web/deno/default.nix @@ -11,15 +11,15 @@ rustPlatform.buildRustPackage rec { pname = "deno"; - version = "1.34.0"; + version = "1.34.1"; src = fetchFromGitHub { owner = "denoland"; repo = pname; rev = "v${version}"; - hash = "sha256-B9YzJsnbohzQQQj2Ec1szh/aY2zoYFOoEXTShwOzMlE="; + hash = "sha256-LpW1cbedMPG8VeuQldfYfnxdLrOeDSSf60WfYJbDwHw="; }; - cargoHash = "sha256-rwN7pEb6bDLb7YrcfuWC9Y0m7b+50AeLKMKx7WLKYT8="; + cargoHash = "sha256-HRsEekv1vSDm2Nk7xvcRmMfHxl4M6BWwHbdPNNop4Ic="; postPatch = '' # upstream uses lld on aarch64-darwin for faster builds diff --git a/pkgs/development/web/deno/librusty_v8.nix b/pkgs/development/web/deno/librusty_v8.nix index 3c1ee3059ecc4..7157610227089 100644 --- a/pkgs/development/web/deno/librusty_v8.nix +++ b/pkgs/development/web/deno/librusty_v8.nix @@ -11,11 +11,11 @@ let }; in fetch_librusty_v8 { - version = "0.72.0"; + version = "0.73.0"; shas = { - x86_64-linux = "sha256-APF8pCLLJ2m2XdvsecEQu5HBuNZx+WO/qRGdwogZi10="; - aarch64-linux = "sha256-clhSbml1qnPGEU6KfhVouIHqWTWjZeN6xLw+AIhHuKI="; - x86_64-darwin = "sha256-2pEpeDJucUIOY0pOpbaUAKW4is7A1Axz+ZDhDSiIEa8="; - aarch64-darwin = "sha256-BL9u5nS0okQyLzLWJh70vyqBoSGW6bJaYzxeCNHGBwg="; + x86_64-linux = "sha256-rDthrqAs4yUl9BpFm8yJ2sKbUImydMMZegUBhcu6vdk="; + aarch64-linux = "sha256-fM7yteYrPxCLNIUKvUpH6XTdD2aYsK4SEyrkknZgzLk="; + x86_64-darwin = "sha256-3c3oNq6WJkFR7E/EeJ7CnN+JO7X5x+wSlqo39TbEDQk="; + aarch64-darwin = "sha256-fO1R99XWfgAGcZXJX8nHbfnPZOlz28kXO7fkkeEF43A="; }; } diff --git a/pkgs/development/web/flyctl/default.nix b/pkgs/development/web/flyctl/default.nix index 3d9199a951c53..f997259f84d70 100644 --- a/pkgs/development/web/flyctl/default.nix +++ b/pkgs/development/web/flyctl/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "flyctl"; - version = "0.1.18"; + version = "0.1.23"; src = fetchFromGitHub { owner = "superfly"; repo = "flyctl"; rev = "v${version}"; - hash = "sha256-ZRLkqymNeSIHfMYqT6T4YzkOuHCrUWRiJHFN1bWbzmk="; + hash = "sha256-ekVqY5rM/CeewZ0wnlSjWusPEQzdeVwIGdfnicMe3k8"; }; - vendorHash = "sha256-UCP73yAeT3JO7fhpshTpbhmB2wLGc26GiLY/DkBAgTg="; + vendorHash = "sha256-7KLEfK2eZLEtOHqQxhpdQCeKVfn+rUu3i699Zk06J/U="; subPackages = [ "." ]; diff --git a/pkgs/development/web/netlify-cli/generate.sh b/pkgs/development/web/netlify-cli/generate.sh index 20264f1b3e243..6377d204a3e30 100755 --- a/pkgs/development/web/netlify-cli/generate.sh +++ b/pkgs/development/web/netlify-cli/generate.sh @@ -10,5 +10,5 @@ node2nix \ --output node-packages.nix \ --composition composition.nix \ --node-env node-env.nix \ - --nodejs-16 \ + --nodejs-18 \ ; diff --git a/pkgs/development/web/netlify-cli/node-env.nix b/pkgs/development/web/netlify-cli/node-env.nix index 5dad9ec63d47c..bc1e36628ac8a 100644 --- a/pkgs/development/web/netlify-cli/node-env.nix +++ b/pkgs/development/web/netlify-cli/node-env.nix @@ -530,12 +530,15 @@ let then ln -s $out/lib/node_modules/.bin $out/bin - # Patch the shebang lines of all the executables + # Fixup all executables ls $out/bin/* | while read i do file="$(readlink -f "$i")" chmod u+rwx "$file" - patchShebangs "$file" + if isScript "$file" + then + sed -i 's/\r$//' "$file" # convert crlf to lf + fi done fi diff --git a/pkgs/development/web/nodejs/nodejs.nix b/pkgs/development/web/nodejs/nodejs.nix index d824d576a471c..75690367ec937 100644 --- a/pkgs/development/web/nodejs/nodejs.nix +++ b/pkgs/development/web/nodejs/nodejs.nix @@ -178,7 +178,7 @@ let Name: v8 Description: V8 JavaScript Engine Version: $major.$minor.$patch - Libs: -L$libv8/lib -lv8 -pthread -licui18n + Libs: -L$libv8/lib -lv8 -pthread -licui18n -licuuc Cflags: -I$libv8/include EOF ''; diff --git a/pkgs/development/web/playwright-test/default.nix b/pkgs/development/web/playwright-test/default.nix index 08f947ea46bc9..b795f708f1896 100644 --- a/pkgs/development/web/playwright-test/default.nix +++ b/pkgs/development/web/playwright-test/default.nix @@ -2,7 +2,7 @@ {pkgs ? import <nixpkgs> { inherit system; - }, system ? builtins.currentSystem, nodejs ? pkgs."nodejs-14_x"}: + }, system ? builtins.currentSystem, nodejs ? pkgs."nodejs_14"}: let nodeEnv = import ./node-env.nix { diff --git a/pkgs/development/web/playwright-test/node-env.nix b/pkgs/development/web/playwright-test/node-env.nix index 5dad9ec63d47c..bc1e36628ac8a 100644 --- a/pkgs/development/web/playwright-test/node-env.nix +++ b/pkgs/development/web/playwright-test/node-env.nix @@ -530,12 +530,15 @@ let then ln -s $out/lib/node_modules/.bin $out/bin - # Patch the shebang lines of all the executables + # Fixup all executables ls $out/bin/* | while read i do file="$(readlink -f "$i")" chmod u+rwx "$file" - patchShebangs "$file" + if isScript "$file" + then + sed -i 's/\r$//' "$file" # convert crlf to lf + fi done fi diff --git a/pkgs/development/web/playwright-test/node-packages.json b/pkgs/development/web/playwright-test/node-packages.json index e8b10e3381a4f..87012158d5e41 100644 --- a/pkgs/development/web/playwright-test/node-packages.json +++ b/pkgs/development/web/playwright-test/node-packages.json @@ -1,3 +1,3 @@ [ - {"@playwright/test": "1.31.1"} + {"@playwright/test": "1.34.3"} ] diff --git a/pkgs/development/web/playwright-test/node-packages.nix b/pkgs/development/web/playwright-test/node-packages.nix index 7dcb6be8080c3..329452c14beeb 100644 --- a/pkgs/development/web/playwright-test/node-packages.nix +++ b/pkgs/development/web/playwright-test/node-packages.nix @@ -4,13 +4,13 @@ let sources = { - "@types/node-18.15.11" = { + "@types/node-20.2.5" = { name = "_at_types_slash_node"; packageName = "@types/node"; - version = "18.15.11"; + version = "20.2.5"; src = fetchurl { - url = "https://registry.npmjs.org/@types/node/-/node-18.15.11.tgz"; - sha512 = "E5Kwq2n4SbMzQOn6wnmBjuK9ouqlURrcZDVfbo9ftDDTFt3nk7ZKK4GMOzoYgnpQJKcxwQw+lGaBvvlMo0qN/Q=="; + url = "https://registry.npmjs.org/@types/node/-/node-20.2.5.tgz"; + sha512 = "JJulVEQXmiY9Px5axXHeYGLSjhkZEnD+MDPDGbCbIAbMslkKwmygtZFy1X6s/075Yo94sf8GuSlFfPzysQrWZQ=="; }; }; "fsevents-2.3.2" = { @@ -22,30 +22,30 @@ let sha512 = "xiqMQR4xAeHTuB9uWm+fFRcIOgKBMiOBP+eXiyT7jsgVCq1bkVygt00oASowB7EdtpOHaaPgKt812P9ab+DDKA=="; }; }; - "playwright-core-1.31.1" = { + "playwright-core-1.34.3" = { name = "playwright-core"; packageName = "playwright-core"; - version = "1.31.1"; + version = "1.34.3"; src = fetchurl { - url = "https://registry.npmjs.org/playwright-core/-/playwright-core-1.31.1.tgz"; - sha512 = "JTyX4kV3/LXsvpHkLzL2I36aCdml4zeE35x+G5aPc4bkLsiRiQshU5lWeVpHFAuC8xAcbI6FDcw/8z3q2xtJSQ=="; + url = "https://registry.npmjs.org/playwright-core/-/playwright-core-1.34.3.tgz"; + sha512 = "2pWd6G7OHKemc5x1r1rp8aQcpvDh7goMBZlJv6Co5vCNLVcQJdhxRL09SGaY6HcyHH9aT4tiynZabMofVasBYw=="; }; }; }; in { - "@playwright/test-1.31.1" = nodeEnv.buildNodePackage { + "@playwright/test-1.34.3" = nodeEnv.buildNodePackage { name = "_at_playwright_slash_test"; packageName = "@playwright/test"; - version = "1.31.1"; + version = "1.34.3"; src = fetchurl { - url = "https://registry.npmjs.org/@playwright/test/-/test-1.31.1.tgz"; - sha512 = "IsytVZ+0QLDh1Hj83XatGp/GsI1CDJWbyDaBGbainsh0p2zC7F4toUocqowmjS6sQff2NGT3D9WbDj/3K2CJiA=="; + url = "https://registry.npmjs.org/@playwright/test/-/test-1.34.3.tgz"; + sha512 = "zPLef6w9P6T/iT6XDYG3mvGOqOyb6eHaV9XtkunYs0+OzxBtrPAAaHotc0X+PJ00WPPnLfFBTl7mf45Mn8DBmw=="; }; dependencies = [ - sources."@types/node-18.15.11" + sources."@types/node-20.2.5" sources."fsevents-2.3.2" - sources."playwright-core-1.31.1" + sources."playwright-core-1.34.3" ]; buildInputs = globalBuildInputs; meta = { diff --git a/pkgs/development/web/playwright/driver.nix b/pkgs/development/web/playwright/driver.nix index 2ebb884aab184..3ee02fe402ec5 100644 --- a/pkgs/development/web/playwright/driver.nix +++ b/pkgs/development/web/playwright/driver.nix @@ -29,15 +29,16 @@ let in { pname = "playwright-driver"; - version = "1.31.1"; + # run ./pkgs/development/python-modules/playwright/update.sh to update + version = "1.34.3"; src = fetchurl { url = "https://playwright.azureedge.net/builds/driver/${filename}"; sha256 = { - x86_64-linux = "1wg49kfs8fflmx8g01bkckbjkghhwy7c44akckjf7dp4lbh1z8fd"; - aarch64-linux = "0f09a0cxqxihy8lmbjzii80jkpf3n5xlvhjpgdkwmrr3wh0nnixj"; - x86_64-darwin = "1zd0dz8jazymcpa1im5yzxb7rwl6wn4xz19lpz83bnpd1njq01b3"; - aarch64-darwin = "0hcn80zm9aki8hzsf1cljzcmi4iaw7fascs8ajj0qcwqkkm4jnw0"; + x86_64-linux = "1xh05v3yqa8gkwayhl4nffgjcnlakpyyi17hwzh0wqzrbwwn0cs8"; + aarch64-linux = "18jxbmhiqda5pzrv6b3n7xi14xg4zvlh6sn7hc3b3hckl77vl933"; + x86_64-darwin = "0fy5nxbvp1kxplavj832gxiznjqpvl0ww869hsfj0h1fibhly7cy"; + aarch64-darwin = "11msl4pnmr8cmlw32xq2qvfz3g3fy0azvq134a47c0fnpj2gd5zl"; }.${system} or throwSystem; }; diff --git a/pkgs/development/web/twitter-bootstrap/default.nix b/pkgs/development/web/twitter-bootstrap/default.nix index 373806af02f3a..7284bc95e54e1 100644 --- a/pkgs/development/web/twitter-bootstrap/default.nix +++ b/pkgs/development/web/twitter-bootstrap/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "bootstrap"; - version = "5.2.3"; + version = "5.3.0"; src = fetchurl { url = "https://github.com/twbs/bootstrap/releases/download/v${version}/${pname}-${version}-dist.zip"; - sha256 = "sha256-j6IBaj3uHiBL0WI+BQ3PR36dKME7uYofWPV+D9QM3Tg="; + sha256 = "sha256-RUN0HbrDlUt7fMDjSHaIoTyOchSmfsMQZyATZmz2zY0="; }; nativeBuildInputs = [ unzip ]; diff --git a/pkgs/games/aaaaxy/default.nix b/pkgs/games/aaaaxy/default.nix index b5f537304b5e3..ccc8ad8853c18 100644 --- a/pkgs/games/aaaaxy/default.nix +++ b/pkgs/games/aaaaxy/default.nix @@ -12,22 +12,24 @@ , libXxf86vm , go-licenses , pkg-config +, zip +, advancecomp , nixosTests }: buildGoModule rec { pname = "aaaaxy"; - version = "1.3.538"; + version = "1.4.6"; src = fetchFromGitHub { owner = "divVerent"; repo = pname; rev = "v${version}"; - hash = "sha256-APoU+VlIUSwMai9INSOyqBp8azy970tF5bz8IDr5NiI="; + hash = "sha256-vl5xFGsajjrD/rUQzA7qae/nTGo99wjyElpHNMbd5fg="; fetchSubmodules = true; }; - vendorHash = "sha256-slvBpweXRLsDegJDQ0ysZ0pugx5fdOOnD/OxWUfUnno="; + vendorHash = "sha256-A8pzwt7Rzn7jPuuApQoZpSFXk1Oepf5u13rk4atG9ww="; buildInputs = [ alsa-lib @@ -39,6 +41,8 @@ buildGoModule rec { nativeBuildInputs = [ go-licenses pkg-config + zip + advancecomp ]; outputs = [ "out" "testing_infra" ]; diff --git a/pkgs/games/alephone/default.nix b/pkgs/games/alephone/default.nix index 03388ae289e1d..1bf732e446bfd 100644 --- a/pkgs/games/alephone/default.nix +++ b/pkgs/games/alephone/default.nix @@ -7,12 +7,12 @@ let self = stdenv.mkDerivation rec { outputs = [ "out" "icons" ]; pname = "alephone"; - version = "1.6.1"; + version = "1.6.2"; src = fetchurl { - url = let date = "20230119"; + url = let date = "20230529"; in "https://github.com/Aleph-One-Marathon/alephone/releases/download/release-${date}/AlephOne-${date}.tar.bz2"; - sha256 = "sha256-rC9RfWUolsKjKGsJaGj0PaO+J4HNF/gQhd56XapcMCY="; + sha256 = "sha256-UqhZvOMOxU4W0eLRRTQvGXaqTpWD5KIdXULClHW7Iyc="; }; nativeBuildInputs = [ pkg-config icoutils ]; diff --git a/pkgs/games/anki/bin.nix b/pkgs/games/anki/bin.nix index 234cba439c7ed..2e97bb91d65f9 100644 --- a/pkgs/games/anki/bin.nix +++ b/pkgs/games/anki/bin.nix @@ -3,22 +3,22 @@ let pname = "anki-bin"; # Update hashes for both Linux and Darwin! - version = "2.1.64"; + version = "2.1.65"; sources = { linux = fetchurl { url = "https://github.com/ankitects/anki/releases/download/${version}/anki-${version}-linux-qt6.tar.zst"; - sha256 = "sha256-J3bfqqleE5DSfEUnzbWBYdMg653MokW9LYN3rnLd/mU="; + sha256 = "sha256-JBqW/aCMUyR0H52WMYuVkcE3/t/joLxfvFho64IzvDg="; }; # For some reason anki distributes completely separate dmg-files for the aarch64 version and the x86_64 version darwin-x86_64 = fetchurl { url = "https://github.com/ankitects/anki/releases/download/${version}/anki-${version}-mac-intel-qt6.dmg"; - sha256 = "sha256-5vve6eiH/OlCqa2HINQfuwmGDpjc1uiiVJSc6iF5rlo="; + sha256 = "sha256-zmCI77yLdoJm/znUgy+xZ8Jd77F3CPlzq3ceBzckA4U="; }; darwin-aarch64 = fetchurl { url = "https://github.com/ankitects/anki/releases/download/${version}/anki-${version}-mac-apple-qt6.dmg"; - sha256 = "sha256-SJWRAI1Xi92pIcOUaW8c4sLAAJTUWteL4oqXm66OWvs="; + sha256 = "sha256-1owbeL28dnOYD7nR9uZt9EHvFK75GFGRe6S9oV85Eoo="; }; }; diff --git a/pkgs/games/chessdb/default.nix b/pkgs/games/chessdb/default.nix index 4b96662d84d79..db6214bdf0964 100644 --- a/pkgs/games/chessdb/default.nix +++ b/pkgs/games/chessdb/default.nix @@ -20,10 +20,6 @@ stdenv.mkDerivation rec { "MANDIR=$(out)/man" ]; - postInstall = '' - wrapProgram $out/bin/chessdb --set TK_LIBRARY "${tk}/lib/${tk.libPrefix}" - ''; - meta = { homepage = "https://chessdb.sourceforge.net/"; description = "A free chess database"; diff --git a/pkgs/games/ddnet/default.nix b/pkgs/games/ddnet/default.nix index b9db71f420820..f235430ca9907 100644 --- a/pkgs/games/ddnet/default.nix +++ b/pkgs/games/ddnet/default.nix @@ -34,19 +34,19 @@ stdenv.mkDerivation rec { pname = "ddnet"; - version = "17.0"; + version = "17.0.3"; src = fetchFromGitHub { owner = "ddnet"; repo = pname; rev = version; - hash = "sha256-boFXzARVG2At92j9gSavteAQ8qTjgJ91hIefVr/e6og="; + hash = "sha256-93zYa6Y5Da8ksaCbgRpePiehMHtcICs4hY6Ys+vUeHw="; }; cargoDeps = rustPlatform.fetchCargoTarball { name = "${pname}-${version}"; inherit src; - hash = "sha256-3itblnHlY1L8g/EGCi1BIWGD6INOpnvLCwJ7zL7KV4w="; + hash = "sha256-OeTINJVe/Ov3A4UmCC3QtCMj8e3vi+Qmai0DXJ3DpVU="; }; nativeBuildInputs = [ diff --git a/pkgs/games/doom-ports/rbdoom-3-bfg/default.nix b/pkgs/games/doom-ports/rbdoom-3-bfg/default.nix index 6fcfb84a689db..a6588ef4cc64f 100644 --- a/pkgs/games/doom-ports/rbdoom-3-bfg/default.nix +++ b/pkgs/games/doom-ports/rbdoom-3-bfg/default.nix @@ -16,13 +16,13 @@ stdenv.mkDerivation rec { pname = "rbdoom-3-bfg"; - version = "1.5.0"; + version = "1.5.1"; src = fetchFromGitHub { owner = "RobertBeckebans"; repo = pname; rev = "v${version}"; - hash = "sha256-jO1+Evk17JUjvYl6QOVAn+pWwr/G8gWMae5CwMhgYZI="; + hash = "sha256-bjjeTdbQDWTibSrIWhCnr6F0Ef17efLgWGQAAwezjUw="; fetchSubmodules = true; }; diff --git a/pkgs/games/doom-ports/slade/default.nix b/pkgs/games/doom-ports/slade/default.nix index 104b4f4582ead..920e22251fb2b 100644 --- a/pkgs/games/doom-ports/slade/default.nix +++ b/pkgs/games/doom-ports/slade/default.nix @@ -19,13 +19,13 @@ stdenv.mkDerivation rec { pname = "slade"; - version = "3.2.2"; + version = "3.2.3"; src = fetchFromGitHub { owner = "sirjuddington"; repo = "SLADE"; rev = version; - sha256 = "sha256-UAxGNJ66o5wO8i/g0CgY395uHfJRJSxTlXlBbhgDAbM="; + sha256 = "sha256-YZTCviGhOlAgD3RidPu8gPqqo4MLURiBGV7nazILwFg="; }; postPatch = lib.optionalString (!stdenv.hostPlatform.isx86) '' diff --git a/pkgs/games/gamepad-tool/default.nix b/pkgs/games/gamepad-tool/default.nix new file mode 100644 index 0000000000000..b73a1d4f3c0dc --- /dev/null +++ b/pkgs/games/gamepad-tool/default.nix @@ -0,0 +1,46 @@ +{ stdenvNoCC, fetchurl, dpkg, lib, qt5, autoPatchelfHook, SDL2 }: + +stdenvNoCC.mkDerivation (finalAttrs: { + pname = "gamepad-tool"; + version = "1.2"; + + src = fetchurl { + url = "https://generalarcade.com/gamepadtool/linux/gamepadtool_${finalAttrs.version}_amd64.deb"; + hash = "sha256-ZuB0TOyT2B5QkU1o5h3/8PL85tBq06hlz5YclRanD88="; + }; + + nativeBuildInputs = [ dpkg qt5.wrapQtAppsHook autoPatchelfHook ]; + + unpackCmd = '' + mkdir -p root + dpkg-deb -x $curSrc root + ''; + + dontBuild = true; + + buildInputs = [ + SDL2 + qt5.qtbase + ]; + + installPhase = '' + runHook preInstall + + mkdir -p $out/bin $out/share/applications + cp usr/bin/gamepad-tool $out/bin + cp -r usr/share/icons $out/share/icons + substitute usr/share/applications/gamepad-tool-debian.desktop \ + $out/share/applications/gamepad-tool.desktop \ + --replace "Exec=gamepad-tool" "Exec=$out/bin/gamepad-tool" \ + --replace "/usr/share/icons/hicolor/256x256/apps/gamepad-tool.png" "$out/share/icons/hicolor/256x256/apps/gamepad-tool.png" + runHook postInstall + ''; + + meta = with lib; { + description = "A simple GUI tool to create/modify gamepad mappings for games that use SDL2 Game Controller API"; + homepage = "https://generalarcade.com/gamepadtool/"; + license = licenses.unfree; + platforms = [ "x86_64-linux" ]; + maintainers = with maintainers; [ gador ]; + }; +}) diff --git a/pkgs/games/gogdl/default.nix b/pkgs/games/gogdl/default.nix index 25b30a00a2e28..346d5f81459ae 100644 --- a/pkgs/games/gogdl/default.nix +++ b/pkgs/games/gogdl/default.nix @@ -10,14 +10,14 @@ buildPythonApplication rec { pname = "gogdl"; - version = "0.7.1"; + version = "0.7.2"; format = "pyproject"; src = fetchFromGitHub { owner = "Heroic-Games-Launcher"; repo = "heroic-gogdl"; - rev = "8bfb965090153c946c616bb0f82e3dc432e0d0e1"; - sha256 = "sha256-ZdPyJk4WPVBtKMTf/AHNpG8QTV2qmpD1DT1D3gK5g2I="; + rev = "d7f29dfef5818e8b323d04761e18a9abb750f93e"; + hash = "sha256-9dAenawt9h/sz5paVYoqk+nmzPrInlqyh1EgshI25CE="; }; disabled = pythonOlder "3.8"; diff --git a/pkgs/games/heroic/default.nix b/pkgs/games/heroic/default.nix index 22913264f3c73..1baf9cbf81630 100644 --- a/pkgs/games/heroic/default.nix +++ b/pkgs/games/heroic/default.nix @@ -2,8 +2,6 @@ , stdenv , fetchFromGitHub , fetchYarnDeps -, fetchpatch -, gitUpdater , yarn , fixup_yarn_lock , nodejs @@ -17,29 +15,20 @@ let appName = "heroic"; in stdenv.mkDerivation rec { pname = "heroic-unwrapped"; - version = "2.7.1"; + version = "2.8.0"; src = fetchFromGitHub { owner = "Heroic-Games-Launcher"; repo = "HeroicGamesLauncher"; rev = "v${version}"; - sha256 = "sha256-l2eVLn1N+1nGxr8Oa2ecQgBmO0w/VJ8AY06GYQ0HiiI="; + hash = "sha256-AZwJRBkWuzBPT+ADVHabiK2KRXe6clZFa0IO99BO2Wk="; }; offlineCache = fetchYarnDeps { yarnLock = "${src}/yarn.lock"; - sha256 = "sha256-R0lZrVfUH8NucuwarcE47jQ8ex5FY2hK6jJJ2TIRSWY="; + hash = "sha256-xiLK0D9+oL2UMD7b/9htOQJEpYCNayKW+KJ/vNVCgsw="; }; - patches = [ - # Fix for capturing keyboard shortcuts when not in focus. - # TODO: Remove when updating past 2.7.1. - (fetchpatch { - url = "https://github.com/Heroic-Games-Launcher/HeroicGamesLauncher/commit/c82e6ca8dd7070071793fe5a3c4c04b4ae02c3c7.patch"; - hash = "sha256-Pum67YPejfq8ERv6XWVLQzs+/SyNojmTGTQpE0UR4kg="; - }) - ]; - nativeBuildInputs = [ yarn fixup_yarn_lock @@ -102,10 +91,6 @@ in stdenv.mkDerivation rec { runHook postInstall ''; - passthru.updateScript = gitUpdater { - rev-prefix = "v"; - }; - meta = with lib; { description = "A Native GOG and Epic Games Launcher for Linux, Windows and Mac"; homepage = "https://github.com/Heroic-Games-Launcher/HeroicGamesLauncher"; diff --git a/pkgs/games/hyperrogue/default.nix b/pkgs/games/hyperrogue/default.nix index 17a5fd95e0375..cd44b9904c461 100644 --- a/pkgs/games/hyperrogue/default.nix +++ b/pkgs/games/hyperrogue/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { pname = "hyperrogue"; - version = "12.1o"; + version = "12.1q"; src = fetchFromGitHub { owner = "zenorogue"; repo = "hyperrogue"; rev = "v${version}"; - sha256 = "sha256-p7F+A7+wjHb17nJqsULhBZMs2P64s9gDOk2Oh4dc/lQ="; + sha256 = "sha256-dYkeAQBpnETbJiXZSejFPJVhXt3kJBBv6qBKPb7t9fU="; }; CXXFLAGS = [ diff --git a/pkgs/games/maptool/default.nix b/pkgs/games/maptool/default.nix new file mode 100644 index 0000000000000..53d8d89d69206 --- /dev/null +++ b/pkgs/games/maptool/default.nix @@ -0,0 +1,119 @@ +{ lib +, copyDesktopItems +, fetchurl +, ffmpeg +, gitUpdater +, jre +, libarchive +, makeDesktopItem +, openjfx +, stdenvNoCC +, wrapGAppsHook +}: +let + pname = "maptool"; + version = "1.13.0"; + repoBase = "https://github.com/RPTools/${pname}"; + src = fetchurl { + url = "${repoBase}/releases/download/${version}/MapTool-${version}.jar"; + hash = "sha256-0jiUYdr2KwMNc8VBgJsEsf4dkrzYfMGwv+jT1RLhUAg="; + }; + + icon = fetchurl { + url = "https://raw.githubusercontent.com/RPTools/${pname}/${version}/package/linux/MapTool.png"; + hash = "sha256-xkVYjMprTanHu8r4b9PHORI8E1aJp+9KDSP5mqCE8ew="; + }; + + meta = with lib; { + description = "Virtual Tabletop for playing roleplaying games with remote players or face to face"; + homepage = "https://www.rptools.net/toolbox/maptool/"; + sourceProvenance = with sourceTypes; [ + binaryBytecode + binaryNativeCode + ]; + license = licenses.agpl3; + maintainers = with maintainers; [ rhendric ]; + }; + + javafxModules = [ "base" "controls" "media" "swing" "web" "fxml" "graphics" ]; + + classpath = + lib.concatMap (mod: [ + "${openjfx}/modules_src/javafx.${mod}/module-info.java" + "${openjfx}/modules/javafx.${mod}" + "${openjfx}/modules_libs/javafx.${mod}" + ]) javafxModules ++ + [ src ]; + + jvmArgs = [ + "-cp" (lib.concatStringsSep ":" classpath) + "-Xss8M" + "-Dsun.java2d.d3d=false" + "-Dfile.encoding=UTF-8" + "-Dpolyglot.engine.WarnInterpreterOnly=false" + "-XX:+ShowCodeDetailsInExceptionMessages" + "--add-opens=java.desktop/java.awt=ALL-UNNAMED" + "--add-opens=java.desktop/java.awt.geom=ALL-UNNAMED" + "--add-opens=java.desktop/sun.awt.geom=ALL-UNNAMED" + "--add-opens=java.base/java.util=ALL-UNNAMED" + "--add-opens=javafx.web/javafx.scene.web=ALL-UNNAMED" + "--add-opens=javafx.web/com.sun.webkit=ALL-UNNAMED" + "--add-opens=javafx.web/com.sun.webkit.dom=ALL-UNNAMED" + "--add-opens=java.desktop/javax.swing=ALL-UNNAMED" + "--add-opens=java.desktop/sun.awt.shell=ALL-UNNAMED" + "--add-opens=java.desktop/com.sun.java.swing.plaf.windows=ALL-UNNAMED" + + # disable telemetry (the empty DSN disables the Sentry library, setting the + # environment to Development disables some logic inside MapTool) + "-Dsentry.dsn" + "-Dsentry.environment=Development" + ]; + + binName = pname; + rdnsName = "net.rptools.maptool"; +in +stdenvNoCC.mkDerivation { + inherit pname version src meta; + + dontUnpack = true; + dontBuild = true; + dontWrapGApps = true; + + nativeBuildInputs = [ + copyDesktopItems + libarchive + wrapGAppsHook + ]; + + desktopItems = [ + (makeDesktopItem { + name = rdnsName; + desktopName = "MapTool"; + icon = rdnsName; + exec = binName; + comment = meta.description; + categories = [ "Game" ]; + }) + ]; + + installPhase = '' + runHook preInstall + + mkdir -p $out/bin + makeWrapper ${jre}/bin/java $out/bin/${binName} \ + "''${gappsWrapperArgs[@]}" \ + --prefix LD_LIBRARY_PATH : ${lib.makeLibraryPath [ ffmpeg ]} \ + --add-flags '${lib.concatStringsSep " " jvmArgs} net.rptools.maptool.client.LaunchInstructions' + + dest=$out/share/icons/hicolor/256x256/apps + mkdir -p "$dest" + ln -s ${icon} "$dest/${rdnsName}.png" + + runHook postInstall + ''; + + passthru.updateScript = gitUpdater { + url = "${repoBase}.git"; + ignoredVersions = "-"; + }; +} diff --git a/pkgs/games/openra/build-engine.nix b/pkgs/games/openra/build-engine.nix new file mode 100644 index 0000000000000..664a4c0735b3a --- /dev/null +++ b/pkgs/games/openra/build-engine.nix @@ -0,0 +1,82 @@ +{ lib, buildDotnetModule, dotnetCorePackages +, fetchFromGitHub +, SDL2, freetype, openal, lua51Packages +}: +engine: + +buildDotnetModule rec { + pname = "openra-${engine.build}"; + inherit (engine) version; + + src = if engine ? src then engine.src else fetchFromGitHub { + owner = "OpenRA"; + repo = "OpenRA"; + rev = "${engine.build}-${engine.version}"; + sha256 = engine.sha256; + }; + + nugetDeps = engine.deps; + + dotnet-sdk = dotnetCorePackages.sdk_6_0; + dotnet-runtime = dotnetCorePackages.runtime_6_0; + + useAppHost = false; + + dotnetFlags = [ "-p:Version=0.0.0.0" ]; # otherwise dotnet build complains, version is saved in VERSION file anyway + + dotnetBuildFlags = [ "-p:TargetPlaform=unix-generic" ]; + dotnetInstallFlags = [ + "-p:TargetPlaform=unix-generic" + "-p:CopyGenericLauncher=True" + "-p:CopyCncDll=True" + "-p:CopyD2kDll=True" + "-p:UseAppHost=False" + ]; + + dontDotnetFixup = true; + + preBuild = '' + make VERSION=${version} version + ''; + + postInstall = '' + # Create the file so that the install_data script will not attempt to download it. + # TODO: fetch the file and include it + touch './IP2LOCATION-LITE-DB1.IPV6.BIN.ZIP' + + # Install all the asset data + ( + . ./packaging/functions.sh + install_data . "$out/lib/${pname}" cnc d2k ra + ) + + # Replace precompiled libraries with links to native one. + # This is similar to configure-system-libraries.sh in the source repository + ln -s -f ${lua51Packages.lua}/lib/liblua.so $out/lib/${pname}/lua51.so + ln -s -f ${SDL2}/lib/libSDL2.so $out/lib/${pname}/SDL2.so + ln -s -f ${openal}/lib/libopenal.so $out/lib/${pname}/soft_oal.so + ln -s -f ${freetype}/lib/libfreetype.so $out/lib/${pname}/freetype6.so + ''; + + postFixup = '' + ( + . ./packaging/functions.sh + install_linux_shortcuts . "" "$out/lib/${pname}" "$out/.bin-unwrapped" "$out/share" "${version}" cnc d2k ra + ) + + # Create Nix wrappers to the application scripts which setup the needed environment + for bin in $(find $out/.bin-unwrapped -type f); do + makeWrapper "$bin" "$out/bin/$(basename "$bin")" \ + --prefix "PATH" : "${lib.makeBinPath [ dotnet-runtime ]}" + done + ''; + + meta = with lib; { + description = "Open Source real-time strategy game engine for early Westwood games such as Command & Conquer: Red Alert. ${engine.build} version."; + homepage = "https://www.openra.net/"; + license = licenses.gpl3; + maintainers = with maintainers; [ mdarocha ]; + platforms = [ "x86_64-linux" ]; + mainProgram = "openra-ra"; + }; +} diff --git a/pkgs/games/openra/default.nix b/pkgs/games/openra/default.nix index 76454f69e4b39..19913a224f46f 100644 --- a/pkgs/games/openra/default.nix +++ b/pkgs/games/openra/default.nix @@ -1,71 +1,12 @@ -/* This file defines all OpenRA packages under `openraPackages`, - e.g. the OpenRA release engine can be found at `openraPackages.engines.release` (see `engines.nix`), - or the out-of-tree mod "Combined Arms" can be found at `openraPackages.mods.ca` (see `mods.nix`). - The `openra` package is just an alias to `openraPackages.engines.release`, - and just provides the mods included in the source code of the engine. - Additional engines or mods can be added with `openraPackages.buildOpenRAEngine` (function around `engine.nix`) - and `openraPackages.buildOpenRAMod` (function around `mod.nix`), respectively. -*/ -pkgs: - -with pkgs.lib; +{ callPackage }: let - /* Building an engine or out-of-tree mod is very similar, - but different enough not to be able to build them with the same package definition, - so instaed we define what is common between them in a separate file. - - Although `callPackage` could be used, it would require undoing `makeOverridable`, - because `common.nix` does not define a package, but just an attribute set, - which is directly passed as part of the argument to the engines and mods `callPackage`, - so either the attributes added by `makeOverridable` have to be removed - or the engine and mod package definitions will need to add `...` to the argument list. - */ - common = let f = import ./common.nix; in f (builtins.intersectAttrs (functionArgs f) pkgs // { - lua = pkgs.lua5_1; - # It is not necessary to run the game, but it is nicer to be given an error dialog in the case of failure, - # rather than having to look to the logs why it is not starting. - inherit (pkgs.gnome) zenity; - }); - - /* Building a set of engines or mods requires some dependencies as well, - so the sets will actually be defined as a function instead, - requiring the dependencies and returning the actual set. - - Not all dependencies for defining a engine or mod set are shared, - so additional arguments can be passed as well. - - The builders for engines and mods allow to delay specifying the name, - by returning a function that expects a name, which we use, in this case, - to base the name on the attribute name instead, preventing the need to specify the name twice - if the attribute name and engine/mod name are equal. - */ - callWithName = name: value: if isFunction value then value name else value; - buildOpenRASet = f: args: pkgs.recurseIntoAttrs (mapAttrs callWithName (f ({ - inherit (pkgs) fetchFromGitHub; - postFetch = '' - sed -i 's/curl/curl --insecure/g' $out/thirdparty/{fetch-thirdparty-deps,noget}.sh - $out/thirdparty/fetch-thirdparty-deps.sh - ''; - } // args))); - -in pkgs.recurseIntoAttrs rec { - # The whole attribute set is destructered to ensure those (and only those) attributes are given - # and to provide defaults for those that are optional. - buildOpenRAEngine = { name ? null, version, description, homepage, mods, src }@engine: - # Allow specifying the name at a later point if no name has been given. - let builder = name: pkgs.callPackage ./engine.nix (common // { - engine = engine // { inherit name; }; - }); in if name == null then builder else builder name; - - # See `buildOpenRAEngine`. - buildOpenRAMod = { name ? null, version, title, description, homepage, src, engine, assetsError ? "" }@mod: ({ version, mods ? [], src }@engine: - let builder = name: pkgs.callPackage ./mod.nix (common // { - mod = mod // { inherit name assetsError; }; - engine = engine // { inherit mods; }; - }); in if name == null then builder else builder name) engine; - - # See `buildOpenRASet`. - engines = buildOpenRASet (import ./engines.nix) { inherit buildOpenRAEngine; }; - mods = buildOpenRASet (import ./mods.nix) { inherit buildOpenRAMod; }; + buildOpenRAEngine = callPackage ./build-engine.nix {}; + callPackage' = path: callPackage path { inherit buildOpenRAEngine; }; +in +{ + engines = { + release = callPackage' ./engines/release; + devtest = callPackage' ./engines/devtest; + }; } diff --git a/pkgs/games/openra/engines/devtest/default.nix b/pkgs/games/openra/engines/devtest/default.nix new file mode 100644 index 0000000000000..7c10b6341b2d8 --- /dev/null +++ b/pkgs/games/openra/engines/devtest/default.nix @@ -0,0 +1,8 @@ +{ buildOpenRAEngine }: + +buildOpenRAEngine { + build = "devtest"; + version = "20230414"; + sha256 = "sha256-NU7NEINyrXSkEI5f3q0FLDve1NkNtr0Gww8E8WF9f5A="; 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+ +let + /* Building an engine or out-of-tree mod is very similar, + but different enough not to be able to build them with the same package definition, + so instaed we define what is common between them in a separate file. + + Although `callPackage` could be used, it would require undoing `makeOverridable`, + because `common.nix` does not define a package, but just an attribute set, + which is directly passed as part of the argument to the engines and mods `callPackage`, + so either the attributes added by `makeOverridable` have to be removed + or the engine and mod package definitions will need to add `...` to the argument list. + */ + common = let f = import ./common.nix; in f (builtins.intersectAttrs (functionArgs f) pkgs // { + lua = pkgs.lua5_1; + # It is not necessary to run the game, but it is nicer to be given an error dialog in the case of failure, + # rather than having to look to the logs why it is not starting. + inherit (pkgs.gnome) zenity; + }); + + /* Building a set of engines or mods requires some dependencies as well, + so the sets will actually be defined as a function instead, + requiring the dependencies and returning the actual set. + + Not all dependencies for defining a engine or mod set are shared, + so additional arguments can be passed as well. + + The builders for engines and mods allow to delay specifying the name, + by returning a function that expects a name, which we use, in this case, + to base the name on the attribute name instead, preventing the need to specify the name twice + if the attribute name and engine/mod name are equal. + */ + callWithName = name: value: if isFunction value then value name else value; + buildOpenRASet = f: args: pkgs.recurseIntoAttrs (mapAttrs callWithName (f ({ + inherit (pkgs) fetchFromGitHub; + postFetch = '' + sed -i 's/curl/curl --insecure/g' $out/thirdparty/{fetch-thirdparty-deps,noget}.sh + $out/thirdparty/fetch-thirdparty-deps.sh + ''; + } // args))); + +in pkgs.recurseIntoAttrs rec { + # The whole attribute set is destructered to ensure those (and only those) attributes are given + # and to provide defaults for those that are optional. + buildOpenRAEngine = { name ? null, version, description, homepage, mods, src }@engine: + # Allow specifying the name at a later point if no name has been given. + let builder = name: pkgs.callPackage ./engine.nix (common // { + engine = engine // { inherit name; }; + }); in if name == null then builder else builder name; + + # See `buildOpenRAEngine`. + buildOpenRAMod = { name ? null, version, title, description, homepage, src, engine, assetsError ? "" }@mod: ({ version, mods ? [], src }@engine: + let builder = name: pkgs.callPackage ./mod.nix (common // { + mod = mod // { inherit name assetsError; }; + engine = engine // { inherit mods; }; + }); in if name == null then builder else builder name) engine; + + # See `buildOpenRASet`. + engines = buildOpenRASet (import ./engines.nix) { inherit buildOpenRAEngine; }; + mods = buildOpenRASet (import ./mods.nix) { inherit buildOpenRAMod; }; +} diff --git a/pkgs/games/openra/engine.nix b/pkgs/games/openra_2019/engine.nix index adc1bf76e0053..d6acf10cfc697 100644 --- a/pkgs/games/openra/engine.nix +++ b/pkgs/games/openra_2019/engine.nix @@ -17,7 +17,7 @@ with lib; stdenv.mkDerivation (recursiveUpdate packageAttrs rec { - pname = "openra"; + pname = "openra_2019"; version = "${engine.name}-${engine.version}"; src = engine.src; diff --git a/pkgs/games/openra/engines.nix b/pkgs/games/openra_2019/engines.nix index bbb4947acd237..bbb4947acd237 100644 --- a/pkgs/games/openra/engines.nix +++ b/pkgs/games/openra_2019/engines.nix diff --git a/pkgs/games/openra/mkdirp.sh b/pkgs/games/openra_2019/mkdirp.sh index 7b2cf0b89c0e6..7b2cf0b89c0e6 100644 --- a/pkgs/games/openra/mkdirp.sh +++ b/pkgs/games/openra_2019/mkdirp.sh diff --git a/pkgs/games/openra/mod-launch-game.sh b/pkgs/games/openra_2019/mod-launch-game.sh index 88b53e71e1bc4..88b53e71e1bc4 100644 --- a/pkgs/games/openra/mod-launch-game.sh +++ b/pkgs/games/openra_2019/mod-launch-game.sh diff --git a/pkgs/games/openra/mod-update.sh b/pkgs/games/openra_2019/mod-update.sh index 8489d5a97a7cc..8489d5a97a7cc 100755 --- a/pkgs/games/openra/mod-update.sh +++ b/pkgs/games/openra_2019/mod-update.sh diff --git a/pkgs/games/openra/mod.nix b/pkgs/games/openra_2019/mod.nix index 4d0a18e6334ea..9d69b79bdeb4b 100644 --- a/pkgs/games/openra/mod.nix +++ b/pkgs/games/openra_2019/mod.nix @@ -23,7 +23,7 @@ let # Based on: https://build.opensuse.org/package/show/home:fusion809/openra-ura in stdenv.mkDerivation (recursiveUpdate packageAttrs rec { name = "${pname}-${version}"; - pname = "openra-${mod.name}"; + pname = "openra_2019-${mod.name}"; inherit (mod) version; srcs = [ diff --git a/pkgs/games/openra/mods.nix b/pkgs/games/openra_2019/mods.nix index 47e86fd09a7d2..47e86fd09a7d2 100644 --- a/pkgs/games/openra/mods.nix +++ b/pkgs/games/openra_2019/mods.nix diff --git a/pkgs/games/openra/openra-mod.desktop b/pkgs/games/openra_2019/openra-mod.desktop index 090b6c1325d10..090b6c1325d10 100644 --- a/pkgs/games/openra/openra-mod.desktop +++ b/pkgs/games/openra_2019/openra-mod.desktop diff --git a/pkgs/games/openra/packages.nix b/pkgs/games/openra_2019/packages.nix index 5ee78fe2b8ff1..5ee78fe2b8ff1 100644 --- a/pkgs/games/openra/packages.nix +++ b/pkgs/games/openra_2019/packages.nix diff --git a/pkgs/games/pokerth/default.nix b/pkgs/games/pokerth/default.nix index fba528933ff40..021fe4100eaeb 100644 --- a/pkgs/games/pokerth/default.nix +++ b/pkgs/games/pokerth/default.nix @@ -1,19 +1,8 @@ -{ lib, mkDerivation, fetchFromGitHub, runCommand, fetchpatch, patchutils, qmake, qtbase +{ lib, mkDerivation, fetchFromGitHub, fetchpatch, qmake, qtbase , SDL, SDL_mixer, boost, curl, gsasl, libgcrypt, libircclient, protobuf, sqlite , wrapQtAppsHook , tinyxml2, target ? "client" }: -let - hiDPI = fetchpatch { - url = "https://github.com/pokerth/pokerth/commit/ad8c9cabfb85d8293720d0f14840278d38b5feeb.patch"; - sha256 = "192x3lqvd1fanasb95shdygn997qfrpk1k62k1f4j3s5chkwvjig"; - }; - - revertPatch = patch: runCommand "revert-${patch.name}" {} '' - ${patchutils}/bin/interdiff ${patch} /dev/null > $out - ''; -in - mkDerivation rec { pname = "pokerth-${target}"; version = "1.1.2"; @@ -21,12 +10,26 @@ mkDerivation rec { src = fetchFromGitHub { owner = "pokerth"; repo = "pokerth"; - rev = "f5688e01b0efb37035e3b0e3a432200185b9a0c5"; - sha256 = "0la8d036pbscjnbxf8lkrqjfq8a4ywsfwxil452fhlays6mr19h0"; + rev = "v${version}"; + hash = "sha256-j4E3VMpaPqX7+hE3wYRZZUeRD//F+K2Gp8oPmJqX5FQ="; }; patches = [ - (revertPatch hiDPI) + (fetchpatch { + name = "pokerth-1.1.2.patch"; + url = "https://aur.archlinux.org/cgit/aur.git/plain/pokerth-1.1.2.patch?h=pokerth&id=7734029cf9c6ef58f42ed873e1b9c3c19eb1df3b"; + hash = "sha256-we2UOCFF5J/Wlji/rJeCHDu/dNsUU+R+bTw83AmvDxs="; + }) + (fetchpatch { + name = "pokerth-1.1.2.patch.2019"; + url = "https://aur.archlinux.org/cgit/aur.git/plain/pokerth-1.1.2.patch.2019?h=pokerth&id=7734029cf9c6ef58f42ed873e1b9c3c19eb1df3b"; + hash = "sha256-m6uFPmPC3T9kV7EI1p33vQSi0d/w+YCH0dKjviAphMY="; + }) + (fetchpatch { + name = "pokerth-1.1.2.patch.2020"; + url = "https://aur.archlinux.org/cgit/aur.git/plain/pokerth-1.1.2.patch.2020?h=pokerth&id=7734029cf9c6ef58f42ed873e1b9c3c19eb1df3b"; + hash = "sha256-I2qrgLGSMvFDHyUZFWGPGnuecZ914NBf2uGK02X/wOg="; + }) ]; postPatch = '' diff --git a/pkgs/games/scid/default.nix b/pkgs/games/scid/default.nix index 792909f856f31..576e6dc36772f 100644 --- a/pkgs/games/scid/default.nix +++ b/pkgs/games/scid/default.nix @@ -1,59 +1,55 @@ -{ lib, fetchurl, tcl, tk, libX11, zlib, makeWrapper }: - -tcl.mkTclDerivation { +{ lib +, stdenv +, fetchFromGitHub +, makeWrapper +, tcl +, tk +, libX11 +, zlib +}: + +tcl.mkTclDerivation rec { pname = "scid"; - version = "4.3"; + version = "5.0.2"; - src = fetchurl { - url = "mirror://sourceforge/scid/scid-4.3.tar.bz2"; - sha256 = "0zb5qp04x8w4gn2kvfdfq2p44kmzfcqn7v167dixz6nlyxg41hrw"; + src = fetchFromGitHub { + owner = "benini"; + repo = "scid"; + rev = "v${version}"; + hash = "sha256-5WGZm7EwhZAMKJKxj/OOIFOJIgPBcc6/Bh4xVAlia4Y="; }; - nativeBuildInputs = [ makeWrapper ]; - buildInputs = [ tk libX11 zlib ]; + postPatch = '' + substituteInPlace configure \ + --replace "set var(INSTALL) {install_mac}" "" + ''; - prePatch = '' - sed -i -e '/^ *set headerPath *{/a ${tcl}/include ${tk}/include' \ - -e '/^ *set libraryPath *{/a ${tcl}/lib ${tk}/lib' \ - -e '/^ *set x11Path *{/a ${libX11}/lib/' \ - configure + nativeBuildInputs = [ + makeWrapper + ]; - sed -i -e '/^ *set scidShareDir/s|\[file.*|"'"$out/share"'"|' \ - tcl/config.tcl - ''; + buildInputs = [ + tk + libX11 + zlib + ]; configureFlags = [ "BINDIR=$(out)/bin" "SHAREDIR=$(out)/share" ]; - hardeningDisable = [ "format" ]; - - dontPatchShebangs = true; - - # TODO: can this use tclWrapperArgs? - postFixup = '' - for cmd in sc_addmove sc_eco sc_epgn scidpgn \ - sc_import sc_spell sc_tree spliteco - do - sed -i -e '1c#!'"$out"'/bin/tcscid' "$out/bin/$cmd" - done - - sed -i -e '1c#!${tcl}/bin/tcslsh' "$out/bin/spf2spi" - sed -i -e '1c#!${tk}/bin/wish' "$out/bin/sc_remote" - sed -i -e '1c#!'"$out"'/bin/tkscid' "$out/bin/scid" + makeFlags = [ + "CC=${stdenv.cc.targetPrefix}cc" + ]; - for cmd in $out/bin/* - do - wrapProgram "$cmd" \ - --set TK_LIBRARY "${tk}/lib/${tk.libPrefix}" - done - ''; + enableParallelBuilding = true; meta = { description = "Chess database with play and training functionality"; maintainers = with lib.maintainers; [ agbrooks ]; homepage = "https://scid.sourceforge.net/"; license = lib.licenses.gpl2; + platforms = lib.platforms.all; }; } diff --git a/pkgs/games/theforceengine/default.nix b/pkgs/games/theforceengine/default.nix index ffc9811e869e0..08209ac28c52e 100644 --- a/pkgs/games/theforceengine/default.nix +++ b/pkgs/games/theforceengine/default.nix @@ -13,13 +13,13 @@ stdenv.mkDerivation rec { pname = "theforceengine"; - version = "1.09.100"; + version = "1.09.200"; src = fetchFromGitHub { owner = "luciusDXL"; repo = "TheForceEngine"; rev = "v${version}"; - sha256 = "sha256-nw9yp/StaSi5thafVT1V5YA2ZCYGWNoHUvQTpK90Foc="; + sha256 = "sha256-r3fNhiPl6fjrIbdLoNIyTETw3lpPZCQYlTA2QJgiDgw="; }; nativeBuildInputs = [ diff --git a/pkgs/games/unciv/default.nix b/pkgs/games/unciv/default.nix index 1042060c171c1..3fc7768c031db 100644 --- a/pkgs/games/unciv/default.nix +++ b/pkgs/games/unciv/default.nix @@ -25,11 +25,11 @@ let in stdenv.mkDerivation rec { pname = "unciv"; - version = "4.6.14-patch1"; + version = "4.6.15"; src = fetchurl { url = "https://github.com/yairm210/Unciv/releases/download/${version}/Unciv.jar"; - hash = "sha256-CVwME8lvRjJ0ugps0lcO8FRk8AsFYs8w0oGNAB9TCnM="; + hash = "sha256-69JEf5dG3Nf4CLT8eKfeo/8givyyxb9QpQSAZ2dG7TI="; }; dontUnpack = true; diff --git a/pkgs/games/vintagestory/default.nix b/pkgs/games/vintagestory/default.nix index 046fbefb43188..0a8eb2e6a0f8c 100644 --- a/pkgs/games/vintagestory/default.nix +++ b/pkgs/games/vintagestory/default.nix @@ -17,11 +17,11 @@ stdenv.mkDerivation rec { pname = "vintagestory"; - version = "1.17.11"; + version = "1.18.5"; src = fetchurl { url = "https://cdn.vintagestory.at/gamefiles/stable/vs_archive_${version}.tar.gz"; - sha256 = "sha256-iIQRwnJX+7GJcOqXJutInqpSX2fKlPmwFFAq6TqNWWY="; + sha256 = "sha256-VW85a8Yi1s+cOSZU5E/Rhhz4IMNLMtdAfOZKJ0axApA="; }; nativeBuildInputs = [ makeWrapper copyDesktopItems ]; diff --git a/pkgs/misc/cups/default.nix b/pkgs/misc/cups/default.nix index d9f136f81389f..44e46355d0bf3 100644 --- a/pkgs/misc/cups/default.nix +++ b/pkgs/misc/cups/default.nix @@ -1,6 +1,5 @@ { lib, stdenv , fetchurl -, fetchpatch , pkg-config , removeReferencesTo , zlib @@ -24,11 +23,11 @@ stdenv.mkDerivation rec { pname = "cups"; - version = "2.4.2"; + version = "2.4.3"; src = fetchurl { url = "https://github.com/OpenPrinting/cups/releases/download/v${version}/cups-${version}-source.tar.gz"; - sha256 = "sha256-8DzLQLCH0eMJQKQOAUHcu6Jj85l0wg658lIQZsnGyQg="; + sha256 = "sha256-nd65jyDpyfSvEhwrEFPnQgt5vWdw8a3tKGYwPSdSb28="; }; outputs = [ "out" "lib" "dev" "man" ]; @@ -41,6 +40,9 @@ stdenv.mkDerivation rec { # service would stop the socket and break subsequent socket activations. # See https://github.com/apple/cups/issues/6005 sed -i '/PartOf=cups.service/d' scheduler/cups.socket.in + '' + lib.optionalString (stdenv.isDarwin && lib.versionOlder stdenv.targetPlatform.darwinSdkVersion "12") '' + substituteInPlace backend/usb-darwin.c \ + --replace "kIOMainPortDefault" "kIOMasterPortDefault" ''; nativeBuildInputs = [ pkg-config removeReferencesTo ]; @@ -134,7 +136,12 @@ stdenv.mkDerivation rec { --replace "Exec=htmlview" "Exec=xdg-open" ''; - passthru.tests.nixos = nixosTests.printing; + passthru.tests = { + inherit (nixosTests) + printing-service + printing-socket + ; + }; meta = with lib; { homepage = "https://openprinting.github.io/cups/"; diff --git a/pkgs/misc/cups/drivers/canon/default.nix b/pkgs/misc/cups/drivers/canon/default.nix index 12e4f5cac9662..40438d333cf97 100644 --- a/pkgs/misc/cups/drivers/canon/default.nix +++ b/pkgs/misc/cups/drivers/canon/default.nix @@ -16,35 +16,32 @@ , coreutils , atk , pkg-config -, gnome2 , libxml2 , runtimeShell -, proot +, libredirect , ghostscript , pkgs -, pkgsi686Linux , zlib }: let - i686_NIX_GCC = pkgsi686Linux.callPackage ({ gcc }: gcc) { }; - ld32 = - if stdenv.hostPlatform.system == "x86_64-linux" then "${stdenv.cc}/nix-support/dynamic-linker-m32" - else if stdenv.hostPlatform.system == "i686-linux" then "${stdenv.cc}/nix-support/dynamic-linker" - else throw "Unsupported platform for Canon UFR2 Drivers: ${stdenv.hostPlatform.system}"; + system = + if stdenv.targetPlatform.system == "x86_64-linux" then "intel" + else if stdenv.targetPlatform.system == "aarch64-linux" then "arm" + else throw "Unsupported platform for Canon UFR2 Drivers: ${stdenv.targetPlatform.system}"; ld64 = "${stdenv.cc}/nix-support/dynamic-linker"; libs = pkgs: lib.makeLibraryPath buildInputs; - version = "5.40"; - dl = "6/0100009236/10"; + version = "5.70"; + dl = "8/0100007658/33"; versionNoDots = builtins.replaceStrings [ "." ] [ "" ] version; src_canon = fetchurl { - url = "http://gdlp01.c-wss.com/gds/${dl}/linux-UFRII-drv-v${versionNoDots}-usen-20.tar.gz"; - sha256 = "sha256:069z6ijmql62mcdyxnzc9mf0dxa6z1107cd0ab4i1adk8kr3d75k"; + url = "http://gdlp01.c-wss.com/gds/${dl}/linux-UFRII-drv-v${versionNoDots}-m17n-11.tar.gz"; + hash = "sha256-d5VHlPpUPAr3RWVdQRdn42YLuVekOw1IaMFLVt1Iu7o="; }; - buildInputs = [ cups zlib jbigkit glib gtk3 gnome2.libglade libxml2 gdk-pixbuf pango cairo atk ]; + buildInputs = [ cups zlib jbigkit glib gtk3 libxml2 gdk-pixbuf pango cairo atk ]; in stdenv.mkDerivation rec { pname = "canon-cups-ufr2"; @@ -54,10 +51,11 @@ stdenv.mkDerivation rec { postUnpack = '' ( cd $sourceRoot - tar -xzf Sources/cnrdrvcups-lb-${version}-1.tar.gz + tar -xf Sources/cnrdrvcups-lb-${version}-1.11.tar.xz sed -ie "s@_prefix=/usr@_prefix=$out@" cnrdrvcups-common-${version}/allgen.sh sed -ie "s@_libdir=/usr/lib@_libdir=$out/lib@" cnrdrvcups-common-${version}/allgen.sh sed -ie "s@_bindir=/usr/bin@_bindir=$out/bin@" cnrdrvcups-common-${version}/allgen.sh + sed -ie "s@/usr@$out@" cnrdrvcups-common-${version}/{{backend,rasterfilter}/Makefile.am,rasterfilter/cnrasterproc.h} sed -ie "s@etc/cngplp@$out/etc/cngplp@" cnrdrvcups-common-${version}/cngplp/Makefile.am sed -ie "s@usr/share/cngplp@$out/usr/share/cngplp@" cnrdrvcups-common-${version}/cngplp/src/Makefile.am patchShebangs cnrdrvcups-common-${version} @@ -67,6 +65,7 @@ stdenv.mkDerivation rec { sed -ie "s@_bindir=/usr/bin@_bindir=$out/bin@" cnrdrvcups-lb-${version}/allgen.sh sed -ie '/^cd \.\.\/cngplp/,/^cd files/{/^cd files/!{d}}' cnrdrvcups-lb-${version}/allgen.sh sed -ie "s@cd \.\./pdftocpca@cd pdftocpca@" cnrdrvcups-lb-${version}/allgen.sh + sed -ie "s@/usr@$out@" cnrdrvcups-lb-${version}/pdftocpca/Makefile.am sed -i "/CNGPLPDIR/d" cnrdrvcups-lb-${version}/Makefile patchShebangs cnrdrvcups-lb-${version} ) @@ -86,8 +85,8 @@ stdenv.mkDerivation rec { ) ( cd cnrdrvcups-common-${version}/Rule - mkdir -p $out/share/usb - install -m 644 *.usb-quirks $out/share/usb + mkdir -p $out/share/cups/usb + install -m 644 *.usb-quirks $out/share/cups/usb ) ( cd cnrdrvcups-lb-${version} @@ -97,73 +96,56 @@ stdenv.mkDerivation rec { mkdir -p $out/share/cups/model install -m 644 ppd/*.ppd $out/share/cups/model/ ) + ( cd lib - mkdir -p $out/lib32 - install -m 755 libs32/intel/libColorGearCufr2.so.2.0.0 $out/lib32 - install -m 755 libs32/intel/libcaepcmufr2.so.1.0 $out/lib32 - install -m 755 libs32/intel/libcaiocnpkbidir.so.1.0.0 $out/lib32 - install -m 755 libs32/intel/libcaiousb.so.1.0.0 $out/lib32 - install -m 755 libs32/intel/libcaiowrapufr2.so.1.0.0 $out/lib32 - install -m 755 libs32/intel/libcanon_slimufr2.so.1.0.0 $out/lib32 - install -m 755 libs32/intel/libcanonufr2r.so.1.0.0 $out/lib32 - install -m 755 libs32/intel/libcnaccm.so.1.0 $out/lib32 - install -m 755 libs32/intel/libcnlbcmr.so.1.0 $out/lib32 - install -m 755 libs32/intel/libcnncapcmr.so.1.0 $out/lib32 - install -m 755 libs32/intel/libufr2filterr.so.1.0.0 $out/lib32 - mkdir -p $out/lib - install -m 755 libs64/intel/libColorGearCufr2.so.2.0.0 $out/lib - install -m 755 libs64/intel/libcaepcmufr2.so.1.0 $out/lib - install -m 755 libs64/intel/libcaiocnpkbidir.so.1.0.0 $out/lib - install -m 755 libs64/intel/libcaiousb.so.1.0.0 $out/lib - install -m 755 libs64/intel/libcaiowrapufr2.so.1.0.0 $out/lib - install -m 755 libs64/intel/libcanon_slimufr2.so.1.0.0 $out/lib - install -m 755 libs64/intel/libcanonufr2r.so.1.0.0 $out/lib - install -m 755 libs64/intel/libcnaccm.so.1.0 $out/lib - install -m 755 libs64/intel/libcnlbcmr.so.1.0 $out/lib - install -m 755 libs64/intel/libcnncapcmr.so.1.0 $out/lib - install -m 755 libs64/intel/libufr2filterr.so.1.0.0 $out/lib - - install -m 755 libs64/intel/cnpdfdrv $out/bin - install -m 755 libs64/intel/cnpkbidir $out/bin - install -m 755 libs64/intel/cnpkmoduleufr2r $out/bin - install -m 755 libs64/intel/cnrsdrvufr2 $out/bin - install -m 755 libs64/intel/cnsetuputil2 $out/bin/cnsetuputil2 + install -m 755 libs64/${system}/libColorGearCufr2.so.2.0.0 $out/lib + install -m 755 libs64/${system}/libcaepcmufr2.so.1.0 $out/lib + install -m 755 libs64/${system}/libcaiocnpkbidir.so.1.0.0 $out/lib + install -m 755 libs64/${system}/libcaiousb.so.1.0.0 $out/lib + install -m 755 libs64/${system}/libcaiowrapufr2.so.1.0.0 $out/lib + install -m 755 libs64/${system}/libcanon_slimufr2.so.1.0.0 $out/lib + install -m 755 libs64/${system}/libcanonufr2r.so.1.0.0 $out/lib + install -m 755 libs64/${system}/libcnaccm.so.1.0 $out/lib + install -m 755 libs64/${system}/libcnlbcmr.so.1.0 $out/lib + install -m 755 libs64/${system}/libcnncapcmr.so.1.0 $out/lib + install -m 755 libs64/${system}/libufr2filterr.so.1.0.0 $out/lib + + install -m 755 libs64/${system}/cnpdfdrv $out/bin + install -m 755 libs64/${system}/cnpkbidir $out/bin + install -m 755 libs64/${system}/cnpkmoduleufr2r $out/bin + install -m 755 libs64/${system}/cnrsdrvufr2 $out/bin + install -m 755 libs64/${system}/cnsetuputil2 $out/bin/cnsetuputil2 mkdir -p $out/share/cnpkbidir - install -m 644 libs64/intel/cnpkbidir_info* $out/share/cnpkbidir + install -m 644 libs64/${system}/cnpkbidir_info* $out/share/cnpkbidir mkdir -p $out/share/ufr2filter - install -m 644 libs64/intel/ThLB* $out/share/ufr2filter - ) - - ( - cd $out/lib32 - ln -sf libcaepcmufr2.so.1.0 libcaepcmufr2.so - ln -sf libcaepcmufr2.so.1.0 libcaepcmufr2.so.1 - ln -sf libcaiowrapufr2.so.1.0.0 libcaiowrapufr2.so - ln -sf libcaiowrapufr2.so.1.0.0 libcaiowrapufr2.so.1 - ln -sf libcanon_slimufr2.so.1.0.0 libcanon_slimufr2.so - ln -sf libcanon_slimufr2.so.1.0.0 libcanon_slimufr2.so.1 - ln -sf libufr2filterr.so.1.0.0 libufr2filterr.so - ln -sf libufr2filterr.so.1.0.0 libufr2filterr.so.1 - - patchelf --set-rpath "$(cat ${i686_NIX_GCC}/nix-support/orig-cc)/lib:${libs pkgsi686Linux}:${pkgsi686Linux.stdenv.cc.libc}/lib:${pkgsi686Linux.libxml2.out}/lib:$out/lib32" libcanonufr2r.so.1.0.0 - patchelf --set-rpath "$(cat ${i686_NIX_GCC}/nix-support/orig-cc)/lib:${libs pkgsi686Linux}:${pkgsi686Linux.stdenv.cc.libc}/lib" libcaepcmufr2.so.1.0 - patchelf --set-rpath "$(cat ${i686_NIX_GCC}/nix-support/orig-cc)/lib:${libs pkgsi686Linux}:${pkgsi686Linux.stdenv.cc.libc}/lib" libColorGearCufr2.so.2.0.0 + install -m 644 libs64/${system}/ThLB* $out/share/ufr2filter ) ( cd $out/lib + + ln -sf libColorGearCufr2.so.2.0.0 libColorGearCufr2.so + ln -sf libColorGearCufr2.so.2.0.0 libColorGearCufr2.so.2 ln -sf libcaepcmufr2.so.1.0 libcaepcmufr2.so ln -sf libcaepcmufr2.so.1.0 libcaepcmufr2.so.1 + ln -sf libcaiocnpkbidir.so.1.0.0 libcaiocnpkbidir.so + ln -sf libcaiocnpkbidir.so.1.0.0 libcaiocnpkbidir.so.1 ln -sf libcaiowrapufr2.so.1.0.0 libcaiowrapufr2.so ln -sf libcaiowrapufr2.so.1.0.0 libcaiowrapufr2.so.1 ln -sf libcanon_slimufr2.so.1.0.0 libcanon_slimufr2.so ln -sf libcanon_slimufr2.so.1.0.0 libcanon_slimufr2.so.1 + ln -sf libcanonufr2r.so.1.0.0 libcanonufr2r.so + ln -sf libcanonufr2r.so.1.0.0 libcanonufr2r.so.1 + ln -sf libcnlbcmr.so.1.0 libcnlbcmr.so + ln -sf libcnlbcmr.so.1.0 libcnlbcmr.so.1 ln -sf libufr2filterr.so.1.0.0 libufr2filterr.so ln -sf libufr2filterr.so.1.0.0 libufr2filterr.so.1 + ln -sf libuictlufr2r.so.1.0.0 libuictlufr2r.so + ln -sf libuictlufr2r.so.1.0.0 libuictlufr2r.so.1 patchelf --set-rpath "$(cat $NIX_CC/nix-support/orig-cc)/lib:${libs pkgs}:${stdenv.cc.cc.lib}/lib64:${stdenv.cc.libc}/lib64:$out/lib" libcanonufr2r.so.1.0.0 patchelf --set-rpath "$(cat $NIX_CC/nix-support/orig-cc)/lib:${libs pkgs}:${stdenv.cc.cc.lib}/lib64:${stdenv.cc.libc}/lib64" libcaepcmufr2.so.1.0 @@ -172,15 +154,17 @@ stdenv.mkDerivation rec { ( cd $out/bin - patchelf --set-interpreter "$(cat ${ld64})" --set-rpath "${lib.makeLibraryPath buildInputs}:${stdenv.cc.cc.lib}/lib64:${stdenv.cc.libc}/lib64" cnsetuputil2 - patchelf --set-interpreter "$(cat ${ld64})" --set-rpath "${lib.makeLibraryPath buildInputs}:${stdenv.cc.cc.lib}/lib64:${stdenv.cc.libc}/lib64" cnpdfdrv - patchelf --set-interpreter "$(cat ${ld64})" --set-rpath "${lib.makeLibraryPath buildInputs}:${stdenv.cc.cc.lib}/lib64:${stdenv.cc.libc}/lib64:$out/lib" cnpkbidir - patchelf --set-interpreter "$(cat ${ld64})" --set-rpath "${lib.makeLibraryPath buildInputs}:${stdenv.cc.cc.lib}/lib64:${stdenv.cc.libc}/lib64:$out/lib" cnrsdrvufr2 - - mv cnsetuputil2 cnsetuputil2.wrapped - echo "#!${runtimeShell} -e" > cnsetuputil2 - echo "exec ${proot}/bin/proot -b $out/usr/share/cnsetuputil2:/usr/share/cnsetuputil2 -b ${coreutils}/bin/ls:/bin/ls -b ${cups}/share:/usr/share/cups $out/bin/cnsetuputil2.wrapped" > cnsetuputil2 - chmod +x cnsetuputil2 + patchelf --set-interpreter "$(cat ${ld64})" --set-rpath "${lib.makeLibraryPath buildInputs}:${stdenv.cc.cc.lib}/lib64:${stdenv.cc.libc}/lib64" cnsetuputil2 cnpdfdrv + patchelf --set-interpreter "$(cat ${ld64})" --set-rpath "${lib.makeLibraryPath buildInputs}:${stdenv.cc.cc.lib}/lib64:${stdenv.cc.libc}/lib64:$out/lib" cnpkbidir cnrsdrvufr2 cnpkmoduleufr2r cnjbigufr2 + + wrapProgram $out/bin/cnrsdrvufr2 \ + --prefix LD_LIBRARY_PATH ":" "$out/lib" \ + --set LD_PRELOAD "${libredirect}/lib/libredirect.so" \ + --set NIX_REDIRECTS /usr/bin/cnpkmoduleufr2r=$out/bin/cnpkmoduleufr2r:/usr/bin/cnjbigufr2=$out/bin/cnjbigufr2 + + wrapProgram $out/bin/cnsetuputil2 \ + --set LD_PRELOAD "${libredirect}/lib/libredirect.so" \ + --set NIX_REDIRECTS /usr/share/cnsetuputil2=$out/usr/share/cnsetuputil2 ) ( @@ -210,8 +194,6 @@ stdenv.mkDerivation rec { homepage = "http://www.canon.com/"; sourceProvenance = with sourceTypes; [ binaryNativeCode ]; license = licenses.unfree; - maintainers = with maintainers; [ - # please consider maintaining if you are updating this package - ]; + maintainers = with maintainers; [ lluchs ]; }; } diff --git a/pkgs/misc/drivers/sc-controller/default.nix b/pkgs/misc/drivers/sc-controller/default.nix index 11663d5d4c444..009e089674533 100644 --- a/pkgs/misc/drivers/sc-controller/default.nix +++ b/pkgs/misc/drivers/sc-controller/default.nix @@ -1,6 +1,5 @@ { lib, buildPythonApplication, fetchFromGitHub, wrapGAppsHook , pytestCheckHook -, fetchpatch , gtk3, gobject-introspection, libappindicator-gtk3, librsvg , evdev, pygobject3, pylibacl, bluez, vdf , linuxHeaders @@ -9,13 +8,13 @@ buildPythonApplication rec { pname = "sc-controller"; - version = "0.4.8.9"; + version = "0.4.8.11"; src = fetchFromGitHub { owner = "Ryochan7"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ym5fkOTRhibBaUqT0+p/jyqqKOVsyMz5INgfkoz0IJA="; + sha256 = "xu9QqddJf0cXkhNPrOnE+L8CV5AfgcCyk9DSh+G94c0="; }; nativeBuildInputs = [ wrapGAppsHook gobject-introspection ]; @@ -26,14 +25,6 @@ buildPythonApplication rec { nativeCheckInputs = [ pytestCheckHook ]; - patches = [ - # Fix a broken test - (fetchpatch { - url = "https://github.com/Ryochan7/sc-controller/pull/73.patch"; - sha256 = "sha256-qU8hIReZE3cEPCMOFc4RCUCIhiS0gJ3PushMkfDlPns="; - }) - ]; - postPatch = '' substituteInPlace scc/paths.py --replace sys.prefix "'$out'" substituteInPlace scc/uinput.py --replace /usr/include ${linuxHeaders}/include diff --git a/pkgs/misc/ghostscript/default.nix b/pkgs/misc/ghostscript/default.nix index 2588e7e9140a3..ad1f3e8e1e44a 100644 --- a/pkgs/misc/ghostscript/default.nix +++ b/pkgs/misc/ghostscript/default.nix @@ -60,7 +60,7 @@ let in stdenv.mkDerivation rec { - pname = "ghostscript${lib.optionalString (x11Support) "-with-X"}"; + pname = "ghostscript${lib.optionalString x11Support "-with-X"}"; version = "10.01.1"; src = fetchurl { @@ -112,7 +112,7 @@ stdenv.mkDerivation rec { ] ++ lib.optionals dynamicDrivers [ "--enable-dynamic" "--disable-hidden-visibility" - ] ++ lib.optional x11Support [ + ] ++ lib.optionals x11Support [ "--with-x" ] ++ lib.optionals cupsSupport [ "--enable-cups" diff --git a/pkgs/misc/jackaudio/default.nix b/pkgs/misc/jackaudio/default.nix index 536c654f0be7f..7c85da21f7f39 100644 --- a/pkgs/misc/jackaudio/default.nix +++ b/pkgs/misc/jackaudio/default.nix @@ -37,6 +37,8 @@ stdenv.mkDerivation (finalAttrs: { sha256 = "01s8i64qczxqawgrzrw19asaqmcspf5l2h3203xzg56wnnhhzcw7"; }; + outputs = [ "out" "dev" ]; + nativeBuildInputs = [ pkg-config python makeWrapper wafHook ]; buildInputs = [ libsamplerate libsndfile readline eigen celt optDbus optPythonDBus optLibffado optAlsaLib optLibopus @@ -64,6 +66,11 @@ stdenv.mkDerivation (finalAttrs: { wrapProgram $out/bin/jack_control --set PYTHONPATH $PYTHONPATH ''); + postFixup = '' + substituteInPlace "$dev/lib/pkgconfig/jack.pc" \ + --replace "$out/include" "$dev/include" + ''; + passthru.tests.pkg-config = testers.testMetaPkgConfig finalAttrs.finalPackage; meta = with lib; { diff --git a/pkgs/misc/lilypond/unstable.nix b/pkgs/misc/lilypond/unstable.nix index e746e37a5c8b7..63f399958da3e 100644 --- a/pkgs/misc/lilypond/unstable.nix +++ b/pkgs/misc/lilypond/unstable.nix @@ -1,10 +1,10 @@ { lib, fetchurl, lilypond }: lilypond.overrideAttrs (oldAttrs: rec { - version = "2.25.4"; + version = "2.25.5"; src = fetchurl { url = "https://lilypond.org/download/sources/v${lib.versions.majorMinor version}/lilypond-${version}.tar.gz"; - sha256 = "sha256-O7YQc00774Nz6KIGC1Za1HBvKaHmUjXeKkZs0YR1HUA="; + sha256 = "sha256-QgFGiNKqfC7Q7E0/yhsXFwKZoj+/07c0GwTPWiDz/u4="; }; passthru.updateScript = { diff --git a/pkgs/misc/urbit/default.nix b/pkgs/misc/urbit/default.nix index a2fb954a1bd0c..3c78544f9bd93 100644 --- a/pkgs/misc/urbit/default.nix +++ b/pkgs/misc/urbit/default.nix @@ -10,15 +10,15 @@ let in stdenv.mkDerivation rec { pname = "urbit"; - version = "2.6"; + version = "2.8"; src = fetchzip { url = "https://github.com/urbit/vere/releases/download/vere-v${version}/${platform}.tgz"; sha256 = { - x86_64-linux = "sha256-VWlIneEmuqqvk6VHX3ocSPOtRuXiIoVUio7EA7LnEXA="; - aarch64-linux = "sha256-m+IoatTRR9YpkVPE1cs3/TVI31z7Av1wrrBePiaNAHg="; - x86_64-darwin = "sha256-eWQ37vK9Q1xe/Kso7Ru7wKOUwUIvpIWqD4NVc4XdOOg="; - aarch64-darwin = "sha256-N4omwDmJpk8kIX2KDht1WVljnJm2JNXswoLsWWc5zoY="; + x86_64-linux = "sha256-reU8i7++VdAiuH36AyfhZhAJPnE4t0nBnYvWoglrKwA="; + aarch64-linux = "sha256-l3190BUIeJVbQI1tfP8W6WHw6WyfoYpI8rnjbgevznk="; + x86_64-darwin = "sha256-tsBuIcbWiK1oyu9UzHfwJe/nsVrLWXzoX/eIHyg4uaU="; + aarch64-darwin = "sha256-f+C5DB+IeN6ZcZ4oES4dc3LQ4pwDDszffu/U/KFwqmg="; }.${stdenv.hostPlatform.system} or (throw "unsupported system ${stdenv.hostPlatform.system}"); }; diff --git a/pkgs/misc/vencord/default.nix b/pkgs/misc/vencord/default.nix index 4f663e534c4ba..b67abf1945585 100644 --- a/pkgs/misc/vencord/default.nix +++ b/pkgs/misc/vencord/default.nix @@ -8,13 +8,13 @@ }: buildNpmPackage rec { pname = "vencord"; - version = "1.1.6"; + version = "1.2.5"; src = fetchFromGitHub { owner = "Vendicated"; repo = "Vencord"; rev = "v${version}"; - sha256 = "sha256-V9fzSoRqVlk9QqpzzR2x+aOwGHhQhQiSjXZWMC0uLnQ="; + sha256 = "sha256-AqzhTzfqbYotQxLrkhkjvSPB4irL/q2fxXusWgCibpI="; }; ESBUILD_BINARY_PATH = lib.getExe (esbuild.override { @@ -33,7 +33,7 @@ buildNpmPackage rec { # Supresses an error about esbuild's version. npmRebuildFlags = [ "|| true" ]; - npmDepsHash = "sha256-jKSdeyQ8oHw7ZGby0XzDg4O8mtH276ykVuBcw7dU/Ls="; + npmDepsHash = "sha256-Sj74qx9Tdz1EsoOVqk4ZdXTXxB4ShrFl3VRCWJ6/KcQ="; npmFlags = [ "--legacy-peer-deps" ]; npmBuildScript = if buildWebExtension then "buildWeb" else "build"; @@ -49,7 +49,7 @@ buildNpmPackage rec { ]; installPhase = if buildWebExtension then '' - cp -r dist/extension-unpacked/ $out + cp -r dist/chromium-unpacked/ $out '' else '' cp -r dist/ $out ''; diff --git a/pkgs/misc/vencord/package-lock.json b/pkgs/misc/vencord/package-lock.json index 57cd8f98dae22..a9db7aa8b155b 100644 --- a/pkgs/misc/vencord/package-lock.json +++ b/pkgs/misc/vencord/package-lock.json @@ -1,29 +1,29 @@ { "name": "vencord", - "version": "1.1.6", + "version": "1.2.5", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "vencord", - "version": "1.1.6", + "version": "1.2.5", "license": "GPL-3.0", "dependencies": { "@vap/core": "0.0.12", - "@vap/shiki": "0.10.3", + "@vap/shiki": "0.10.5", "fflate": "^0.7.4", "nanoid": "^4.0.2", "virtual-merge": "^1.0.1" }, "devDependencies": { - "@types/diff": "^5.0.2", - "@types/lodash": "^4.14.191", - "@types/node": "^18.11.18", - "@types/react": "^18.0.27", - "@types/react-dom": "^18.0.10", + "@types/diff": "^5.0.3", + "@types/lodash": "^4.14.194", + "@types/node": "^18.16.3", + "@types/react": "^18.2.0", + "@types/react-dom": "^18.2.1", "@types/yazl": "^2.4.2", - "@typescript-eslint/eslint-plugin": "^5.49.0", - "@typescript-eslint/parser": "^5.49.0", + "@typescript-eslint/eslint-plugin": "^5.59.1", + "@typescript-eslint/parser": "^5.59.1", "diff": "^5.1.0", "discord-types": "^1.3.26", "esbuild": "^0.15.18", @@ -31,17 +31,17 @@ "eslint-import-resolver-alias": "^1.1.2", "eslint-plugin-header": "^3.1.1", "eslint-plugin-path-alias": "^1.0.0", - "eslint-plugin-simple-import-sort": "^8.0.0", + "eslint-plugin-simple-import-sort": "^10.0.0", "eslint-plugin-unused-imports": "^2.0.0", "highlight.js": "10.6.0", "moment": "^2.29.4", - "puppeteer-core": "^19.6.0", + "puppeteer-core": "^19.11.1", "standalone-electron-types": "^1.0.0", - "stylelint": "^14.16.1", - "stylelint-config-standard": "^29.0.0", - "tsx": "^3.12.6", - "type-fest": "^3.5.3", - "typescript": "^4.9.4" + "stylelint": "^15.6.0", + "stylelint-config-standard": "^33.0.0", + "tsx": "^3.12.7", + "type-fest": "^3.9.0", + "typescript": "^5.0.4" }, "engines": { "node": ">=18", @@ -154,6 +154,52 @@ "node": ">=4" } }, + "node_modules/@csstools/css-parser-algorithms": { + "version": "2.1.1", + "resolved": "https://registry.npmjs.org/@csstools/css-parser-algorithms/-/css-parser-algorithms-2.1.1.tgz", + "integrity": "sha512-viRnRh02AgO4mwIQb2xQNJju0i+Fh9roNgmbR5xEuG7J3TGgxjnE95HnBLgsFJOJOksvcfxOUCgODcft6Y07cA==", + "dev": true, + "engines": { + "node": "^14 || ^16 || >=18" + }, + "funding": { + "type": "opencollective", + "url": "https://opencollective.com/csstools" + }, + "peerDependencies": { + "@csstools/css-tokenizer": "^2.1.1" + } + }, + "node_modules/@csstools/css-tokenizer": { + "version": "2.1.1", + "resolved": "https://registry.npmjs.org/@csstools/css-tokenizer/-/css-tokenizer-2.1.1.tgz", + "integrity": "sha512-GbrTj2Z8MCTUv+52GE0RbFGM527xuXZ0Xa5g0Z+YN573uveS4G0qi6WNOMyz3yrFM/jaILTTwJ0+umx81EzqfA==", + "dev": true, + "engines": { + "node": "^14 || ^16 || >=18" + }, + "funding": { + "type": "opencollective", + "url": "https://opencollective.com/csstools" + } + }, + "node_modules/@csstools/media-query-list-parser": { + "version": "2.0.4", + "resolved": "https://registry.npmjs.org/@csstools/media-query-list-parser/-/media-query-list-parser-2.0.4.tgz", + "integrity": "sha512-GyYot6jHgcSDZZ+tLSnrzkR7aJhF2ZW6d+CXH66mjy5WpAQhZD4HDke2OQ36SivGRWlZJpAz7TzbW6OKlEpxAA==", + "dev": true, + "engines": { + "node": "^14 || ^16 || >=18" + }, + "funding": { + "type": "opencollective", + "url": "https://opencollective.com/csstools" + }, + "peerDependencies": { + "@csstools/css-parser-algorithms": "^2.1.1", + "@csstools/css-tokenizer": "^2.1.1" + } + }, "node_modules/@csstools/selector-specificity": { "version": "2.2.0", "resolved": "https://registry.npmjs.org/@csstools/selector-specificity/-/selector-specificity-2.2.0.tgz", @@ -378,9 +424,9 @@ } }, "node_modules/@puppeteer/browsers": { - "version": "0.4.1", - "resolved": "https://registry.npmjs.org/@puppeteer/browsers/-/browsers-0.4.1.tgz", - "integrity": "sha512-4IICvy1McAkT/HyNZHIs7sp8ngBX1dmO0TPQ+FWq9ATQMqI8p+Ulm5A3kS2wYDh5HDHHkYrrETOu6rlj64VuTw==", + "version": "0.5.0", + "resolved": "https://registry.npmjs.org/@puppeteer/browsers/-/browsers-0.5.0.tgz", + "integrity": "sha512-Uw6oB7VvmPRLE4iKsjuOh8zgDabhNX67dzo8U/BB0f9527qx+4eeUs+korU98OhG5C4ubg7ufBgVi63XYwS6TQ==", "dev": true, "dependencies": { "debug": "4.3.4", @@ -414,9 +460,9 @@ "dev": true }, "node_modules/@types/json-schema": { - "version": "7.0.11", - "resolved": "https://registry.npmjs.org/@types/json-schema/-/json-schema-7.0.11.tgz", - "integrity": "sha512-wOuvG1SN4Us4rez+tylwwwCV1psiNVOkJeM3AUWUNWg/jDQY2+HE/444y5gc+jBmRqASOm2Oeh5c1axHobwRKQ==", + "version": "7.0.12", + "resolved": "https://registry.npmjs.org/@types/json-schema/-/json-schema-7.0.12.tgz", + "integrity": "sha512-Hr5Jfhc9eYOQNPYO5WLDq/n4jqijdHNlDXjuAQkkt+mWdQR+XJToOHrsD4cPaMXpn6KO7y2+wM8AZEs8VpBLVA==", "dev": true }, "node_modules/@types/lodash": { @@ -432,9 +478,9 @@ "dev": true }, "node_modules/@types/node": { - "version": "18.15.11", - "resolved": "https://registry.npmjs.org/@types/node/-/node-18.15.11.tgz", - "integrity": "sha512-E5Kwq2n4SbMzQOn6wnmBjuK9ouqlURrcZDVfbo9ftDDTFt3nk7ZKK4GMOzoYgnpQJKcxwQw+lGaBvvlMo0qN/Q==", + "version": "18.16.16", + "resolved": "https://registry.npmjs.org/@types/node/-/node-18.16.16.tgz", + "integrity": "sha512-NpaM49IGQQAUlBhHMF82QH80J08os4ZmyF9MkpCzWAGuOHqE4gTEbhzd7L3l5LmWuZ6E0OiC1FweQ4tsiW35+g==", "dev": true }, "node_modules/@types/normalize-package-data": { @@ -443,12 +489,6 @@ "integrity": "sha512-Gj7cI7z+98M282Tqmp2K5EIsoouUEzbBJhQQzDE3jSIRk6r9gsz0oUokqIUR4u1R3dMHo0pDHM7sNOHyhulypw==", "dev": true }, - "node_modules/@types/parse-json": { - "version": "4.0.0", - "resolved": "https://registry.npmjs.org/@types/parse-json/-/parse-json-4.0.0.tgz", - "integrity": "sha512-//oorEZjL6sbPcKUaCdIGlIUeH26mgzimjBB77G6XRgnDl/L5wOnpyBGRe/Mmf5CVW3PwEBE1NjiMZ/ssFh4wA==", - "dev": true - }, "node_modules/@types/prop-types": { "version": "15.7.5", "resolved": "https://registry.npmjs.org/@types/prop-types/-/prop-types-15.7.5.tgz", @@ -456,9 +496,9 @@ "dev": true }, "node_modules/@types/react": { - 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"version": "19.9.0", - "resolved": "https://registry.npmjs.org/puppeteer-core/-/puppeteer-core-19.9.0.tgz", - "integrity": "sha512-IJYfCE0oFpi5dTvNFqOwo8Dey6zzx7hANy7z6K2bjpCux9oPOSOIubq40awNhaHlfi8soYtgU4qabnzMXB7xBQ==", + "version": "19.11.1", + "resolved": "https://registry.npmjs.org/puppeteer-core/-/puppeteer-core-19.11.1.tgz", + "integrity": "sha512-qcuC2Uf0Fwdj9wNtaTZ2OvYRraXpAK+puwwVW8ofOhOgLPZyz1c68tsorfIZyCUOpyBisjr+xByu7BMbEYMepA==", "dev": true, "dependencies": { - "@puppeteer/browsers": "0.4.1", - "chromium-bidi": "0.4.6", + "@puppeteer/browsers": "0.5.0", + "chromium-bidi": "0.4.7", "cross-fetch": "3.1.5", "debug": "4.3.4", "devtools-protocol": "0.0.1107588", @@ -3843,10 +3918,16 @@ } }, "node_modules/signal-exit": { - "version": "3.0.7", - "resolved": "https://registry.npmjs.org/signal-exit/-/signal-exit-3.0.7.tgz", - "integrity": "sha512-wnD2ZE+l+SPC/uoS0vXeE9L1+0wuaMqKlfz9AMUo38JsyLSBWSFcHR1Rri62LZc12vLr1gb3jl7iwQhgwpAbGQ==", - "dev": true + "version": "4.0.2", + "resolved": "https://registry.npmjs.org/signal-exit/-/signal-exit-4.0.2.tgz", + "integrity": "sha512-MY2/qGx4enyjprQnFaZsHib3Yadh3IXyV2C321GY0pjGfVBu4un0uDJkwgdxqO+Rdx8JMT8IfJIRwbYVz3Ob3Q==", + "dev": true, + "engines": { + "node": ">=14" + }, + "funding": { + "url": "https://github.com/sponsors/isaacs" + } }, "node_modules/slash": { "version": "3.0.0", @@ -4285,16 +4366,20 @@ "dev": true }, "node_modules/stylelint": { - "version": "14.16.1", - "resolved": "https://registry.npmjs.org/stylelint/-/stylelint-14.16.1.tgz", - "integrity": "sha512-ErlzR/T3hhbV+a925/gbfc3f3Fep9/bnspMiJPorfGEmcBbXdS+oo6LrVtoUZ/w9fqD6o6k7PtUlCOsCRdjX/A==", + "version": "15.6.2", + "resolved": "https://registry.npmjs.org/stylelint/-/stylelint-15.6.2.tgz", + "integrity": "sha512-fjQWwcdUye4DU+0oIxNGwawIPC5DvG5kdObY5Sg4rc87untze3gC/5g/ikePqVjrAsBUZjwMN+pZsAYbDO6ArQ==", "dev": true, "dependencies": { - "@csstools/selector-specificity": "^2.0.2", + "@csstools/css-parser-algorithms": "^2.1.1", + "@csstools/css-tokenizer": "^2.1.1", + "@csstools/media-query-list-parser": "^2.0.4", + "@csstools/selector-specificity": "^2.2.0", "balanced-match": "^2.0.0", "colord": "^2.9.3", - "cosmiconfig": "^7.1.0", + "cosmiconfig": "^8.1.3", "css-functions-list": "^3.1.0", + "css-tree": "^2.3.1", "debug": "^4.3.4", "fast-glob": "^3.2.12", "fastest-levenshtein": "^1.0.16", @@ -4302,38 +4387,38 @@ "global-modules": "^2.0.0", "globby": "^11.1.0", "globjoin": "^0.1.4", - "html-tags": "^3.2.0", - "ignore": "^5.2.1", + "html-tags": "^3.3.1", + "ignore": "^5.2.4", "import-lazy": "^4.0.0", "imurmurhash": "^0.1.4", "is-plain-object": "^5.0.0", - "known-css-properties": "^0.26.0", + "known-css-properties": "^0.27.0", "mathml-tag-names": "^2.1.3", "meow": "^9.0.0", "micromatch": "^4.0.5", "normalize-path": "^3.0.0", "picocolors": "^1.0.0", - "postcss": "^8.4.19", + "postcss": "^8.4.23", "postcss-media-query-parser": "^0.2.3", "postcss-resolve-nested-selector": "^0.1.1", "postcss-safe-parser": "^6.0.0", - "postcss-selector-parser": "^6.0.11", + "postcss-selector-parser": "^6.0.12", "postcss-value-parser": "^4.2.0", "resolve-from": "^5.0.0", "string-width": "^4.2.3", "strip-ansi": "^6.0.1", "style-search": "^0.1.0", - "supports-hyperlinks": "^2.3.0", + "supports-hyperlinks": "^3.0.0", "svg-tags": "^1.0.0", "table": "^6.8.1", "v8-compile-cache": "^2.3.0", - "write-file-atomic": "^4.0.2" + "write-file-atomic": "^5.0.1" }, "bin": { "stylelint": "bin/stylelint.js" }, "engines": { - "node": "^12.20.0 || ^14.13.1 || >=16.0.0" + "node": "^14.13.1 || >=16.0.0" }, "funding": { "type": "opencollective", @@ -4341,24 +4426,24 @@ } }, "node_modules/stylelint-config-recommended": { - "version": "9.0.0", - "resolved": "https://registry.npmjs.org/stylelint-config-recommended/-/stylelint-config-recommended-9.0.0.tgz", - "integrity": "sha512-9YQSrJq4NvvRuTbzDsWX3rrFOzOlYBmZP+o513BJN/yfEmGSr0AxdvrWs0P/ilSpVV/wisamAHu5XSk8Rcf4CQ==", + "version": "12.0.0", + "resolved": "https://registry.npmjs.org/stylelint-config-recommended/-/stylelint-config-recommended-12.0.0.tgz", + "integrity": "sha512-x6x8QNARrGO2sG6iURkzqL+Dp+4bJorPMMRNPScdvaUK8PsynriOcMW7AFDKqkWAS5wbue/u8fUT/4ynzcmqdQ==", "dev": true, "peerDependencies": { - "stylelint": "^14.10.0" + "stylelint": "^15.5.0" } }, "node_modules/stylelint-config-standard": { - "version": "29.0.0", - "resolved": "https://registry.npmjs.org/stylelint-config-standard/-/stylelint-config-standard-29.0.0.tgz", - "integrity": "sha512-uy8tZLbfq6ZrXy4JKu3W+7lYLgRQBxYTUUB88vPgQ+ZzAxdrvcaSUW9hOMNLYBnwH+9Kkj19M2DHdZ4gKwI7tg==", + "version": "33.0.0", + "resolved": "https://registry.npmjs.org/stylelint-config-standard/-/stylelint-config-standard-33.0.0.tgz", + "integrity": "sha512-eyxnLWoXImUn77+ODIuW9qXBDNM+ALN68L3wT1lN2oNspZ7D9NVGlNHb2QCUn4xDug6VZLsh0tF8NyoYzkgTzg==", "dev": true, "dependencies": { - "stylelint-config-recommended": "^9.0.0" + "stylelint-config-recommended": "^12.0.0" }, "peerDependencies": { - "stylelint": "^14.14.0" + "stylelint": "^15.5.0" } }, "node_modules/stylelint/node_modules/balanced-match": { @@ -4398,16 +4483,16 @@ } }, "node_modules/supports-hyperlinks": { - "version": "2.3.0", - "resolved": "https://registry.npmjs.org/supports-hyperlinks/-/supports-hyperlinks-2.3.0.tgz", - "integrity": "sha512-RpsAZlpWcDwOPQA22aCH4J0t7L8JmAvsCxfOSEwm7cQs3LshN36QaTkwd70DnBOXDWGssw2eUoc8CaRWT0XunA==", + "version": "3.0.0", + "resolved": "https://registry.npmjs.org/supports-hyperlinks/-/supports-hyperlinks-3.0.0.tgz", + "integrity": "sha512-QBDPHyPQDRTy9ku4URNGY5Lah8PAaXs6tAAwp55sL5WCsSW7GIfdf6W5ixfziW+t7wh3GVvHyHHyQ1ESsoRvaA==", "dev": true, "dependencies": { "has-flag": "^4.0.0", "supports-color": "^7.0.0" }, "engines": { - "node": ">=8" + "node": ">=14.18" } }, "node_modules/supports-preserve-symlinks-flag": { @@ -4603,9 +4688,9 @@ } }, "node_modules/tsx": { - "version": "3.12.6", - "resolved": "https://registry.npmjs.org/tsx/-/tsx-3.12.6.tgz", - "integrity": "sha512-q93WgS3lBdHlPgS0h1i+87Pt6n9K/qULIMNYZo07nSeu2z5QE2CellcAZfofVXBo2tQg9av2ZcRMQ2S2i5oadQ==", + "version": "3.12.7", + "resolved": "https://registry.npmjs.org/tsx/-/tsx-3.12.7.tgz", + "integrity": "sha512-C2Ip+jPmqKd1GWVQDvz/Eyc6QJbGfE7NrR3fx5BpEHMZsEHoIxHL1j+lKdGobr8ovEyqeNkPLSKp6SCSOt7gmw==", "dev": true, "dependencies": { "@esbuild-kit/cjs-loader": "^2.4.2", @@ -4632,9 +4717,9 @@ } }, "node_modules/type-fest": { - "version": "3.8.0", - "resolved": "https://registry.npmjs.org/type-fest/-/type-fest-3.8.0.tgz", - "integrity": "sha512-FVNSzGQz9Th+/9R6Lvv7WIAkstylfHN2/JYxkyhhmKFYh9At2DST8t6L6Lref9eYO8PXFTfG9Sg1Agg0K3vq3Q==", + "version": "3.11.0", + "resolved": "https://registry.npmjs.org/type-fest/-/type-fest-3.11.0.tgz", + "integrity": "sha512-JaPw5U9ixP0XcpUbQoVSbxSDcK/K4nww20C3kjm9yE6cDRRhptU28AH60VWf9ltXmCrIfIbtt9J+2OUk2Uqiaw==", "dev": true, "engines": { "node": ">=14.16" @@ -4644,16 +4729,16 @@ } }, "node_modules/typescript": { - "version": "4.9.5", - "resolved": "https://registry.npmjs.org/typescript/-/typescript-4.9.5.tgz", - "integrity": "sha512-1FXk9E2Hm+QzZQ7z+McJiHL4NW1F2EzMu9Nq9i3zAaGqibafqYwCVU6WyWAuyQRRzOlxou8xZSyXLEN8oKj24g==", + "version": "5.0.4", + "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.0.4.tgz", + "integrity": "sha512-cW9T5W9xY37cc+jfEnaUvX91foxtHkza3Nw3wkoF4sSlKn0MONdkdEndig/qPBWXNkmplh3NzayQzCiHM4/hqw==", "dev": true, "bin": { "tsc": "bin/tsc", "tsserver": "bin/tsserver" }, "engines": { - "node": ">=4.2.0" + "node": ">=12.20" } }, "node_modules/unbzip2-stream": { @@ -4864,16 +4949,16 @@ "dev": true }, "node_modules/write-file-atomic": { - "version": "4.0.2", - "resolved": "https://registry.npmjs.org/write-file-atomic/-/write-file-atomic-4.0.2.tgz", - "integrity": "sha512-7KxauUdBmSdWnmpaGFg+ppNjKF8uNLry8LyzjauQDOVONfFLNKrKvQOxZ/VuTIcS/gge/YNahf5RIIQWTSarlg==", + "version": "5.0.1", + "resolved": "https://registry.npmjs.org/write-file-atomic/-/write-file-atomic-5.0.1.tgz", + "integrity": "sha512-+QU2zd6OTD8XWIJCbffaiQeH9U73qIqafo1x6V1snCWYGJf6cVE0cDR4D8xRzcEnfI21IFrUPzPGtcPf8AC+Rw==", "dev": true, "dependencies": { "imurmurhash": "^0.1.4", - "signal-exit": "^3.0.7" + "signal-exit": "^4.0.1" }, "engines": { - "node": "^12.13.0 || ^14.15.0 || >=16.0.0" + "node": "^14.17.0 || ^16.13.0 || >=18.0.0" } }, "node_modules/ws": { @@ -4912,15 +4997,6 @@ "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A==", "dev": true }, - "node_modules/yaml": { - "version": "1.10.2", - "resolved": "https://registry.npmjs.org/yaml/-/yaml-1.10.2.tgz", - "integrity": "sha512-r3vXyErRCYJ7wg28yvBY5VSoAF8ZvlcW9/BwUzEtUsjvX/DKs24dIkuwjtuprwJJHsbyUbLApepYTR1BN4uHrg==", - "dev": true, - "engines": { - "node": ">= 6" - } - }, "node_modules/yargs": { "version": "17.7.1", "resolved": "https://registry.npmjs.org/yargs/-/yargs-17.7.1.tgz", diff --git a/pkgs/os-specific/darwin/apple-sdk/default.nix b/pkgs/os-specific/darwin/apple-sdk/default.nix index 5cf37e8f4026e..0c959695d7795 100644 --- a/pkgs/os-specific/darwin/apple-sdk/default.nix +++ b/pkgs/os-specific/darwin/apple-sdk/default.nix @@ -1,6 +1,9 @@ -{ stdenv, fetchurl, xar, cpio, pkgs, python3, pbzx, lib, darwin-stubs, print-reexports }: +{ stdenv, fetchurl, libxml2, xar, cpio, pkgs, python3Minimal, pbzx, lib, darwin-stubs, print-reexports }: let + xarMinimal = xar.override { + libxml2 = libxml2.override { pythonSupport = false; }; + }; # sadly needs to be exported because security_tool needs it sdk = stdenv.mkDerivation rec { pname = "MacOS_SDK"; @@ -16,7 +19,7 @@ let sha256 = "13xq34sb7383b37hwy076gnhf96prpk1b4087p87xnwswxbrisih"; }; - nativeBuildInputs = [ xar cpio python3 pbzx ]; + nativeBuildInputs = [ xarMinimal cpio python3Minimal pbzx ]; outputs = [ "out" "dev" "man" ]; @@ -320,6 +323,15 @@ in rec { ''; }); + System = lib.overrideDerivation super.System (drv: { + installPhase = '' + mkdir -p $out/Library/Frameworks/System.framework/Versions/B + ln -s $out/Library/Frameworks/System.framework/Versions/{B,Current} + ln -s ${pkgs.darwin.Libsystem}/lib/libSystem.B.tbd $out/Library/Frameworks/System.framework/Versions/B/System.tbd + ln -s $out/Library/Frameworks/System.framework/{Versions/Current/,}System.tbd + ''; + }); + WebKit = lib.overrideDerivation super.WebKit (drv: { extraTBDFiles = [ "Versions/A/Frameworks/WebCore.framework/Versions/A/WebCore.tbd" diff --git a/pkgs/os-specific/darwin/apple-sdk/frameworks.nix b/pkgs/os-specific/darwin/apple-sdk/frameworks.nix index 0c70d9bc258f2..a9fbcc066a3ca 100644 --- a/pkgs/os-specific/darwin/apple-sdk/frameworks.nix +++ b/pkgs/os-specific/darwin/apple-sdk/frameworks.nix @@ -104,6 +104,7 @@ with frameworks; with libs; { SpriteKit = {}; StoreKit = {}; SyncServices = {}; + System = {}; SystemConfiguration = { inherit Security; }; TWAIN = { inherit Carbon; }; Tcl = {}; diff --git a/pkgs/os-specific/darwin/apple-source-releases/adv_cmds/boot.nix b/pkgs/os-specific/darwin/apple-source-releases/adv_cmds/boot.nix index 910b42b0c9d40..7d1066a259150 100644 --- a/pkgs/os-specific/darwin/apple-source-releases/adv_cmds/boot.nix +++ b/pkgs/os-specific/darwin/apple-source-releases/adv_cmds/boot.nix @@ -32,6 +32,9 @@ in appleDerivation { substituteInPlace Makefile --replace perl true + substituteInPlace colldef.tproj/scan.l \ + --replace 'static orderpass = 0;' 'static int orderpass = 0;' + for subproject in colldef mklocale monetdef msgdef numericdef timedef; do substituteInPlace usr-share-locale.tproj/$subproject/BSDmakefile \ --replace /usr/share/locale "" \ @@ -42,6 +45,10 @@ in appleDerivation { preBuild = '' cp -r --no-preserve=all ${recentAdvCmds}/colldef . + + substituteInPlace colldef/scan.l \ + --replace 'static orderpass = 0;' 'static int orderpass = 0;' + pushd colldef mv locale/collate.h . flex -t -8 -i scan.l > scan.c diff --git a/pkgs/os-specific/darwin/apple-source-releases/adv_cmds/default.nix b/pkgs/os-specific/darwin/apple-source-releases/adv_cmds/default.nix index 9c7d4f7702fbd..e44241171c60b 100644 --- a/pkgs/os-specific/darwin/apple-source-releases/adv_cmds/default.nix +++ b/pkgs/os-specific/darwin/apple-source-releases/adv_cmds/default.nix @@ -6,6 +6,8 @@ appleDerivation { patchPhase = '' substituteInPlace adv_cmds.xcodeproj/project.pbxproj \ --replace '/usr/lib/libtermcap.dylib' 'libncurses.dylib' + substituteInPlace colldef/scan.l \ + --replace 'static orderpass = 0;' 'static int orderpass = 0;' ''; # pkill requires special private headers that are unavailable in diff --git a/pkgs/os-specific/darwin/apple-source-releases/configd/default.nix b/pkgs/os-specific/darwin/apple-source-releases/configd/default.nix index 37830c0665e12..d17db5a345a89 100644 --- a/pkgs/os-specific/darwin/apple-source-releases/configd/default.nix +++ b/pkgs/os-specific/darwin/apple-source-releases/configd/default.nix @@ -1,67 +1,32 @@ -{ lib, stdenv, appleDerivation', launchd, bootstrap_cmds, xnu, ppp, IOKit, eap8021x, Security +{ lib, stdenv, appleDerivation', launchd, bootstrap_cmds, xnu, xpc, ppp, IOKit, eap8021x, Security , headersOnly ? false }: appleDerivation' stdenv { meta.broken = stdenv.cc.nativeLibc; nativeBuildInputs = lib.optionals (!headersOnly) [ bootstrap_cmds ]; - buildInputs = lib.optionals (!headersOnly) [ launchd ppp IOKit eap8021x ]; + buildInputs = lib.optionals (!headersOnly) [ launchd ppp xpc IOKit eap8021x ]; propagatedBuildInputs = lib.optionals (!headersOnly) [ Security ]; - patchPhase = lib.optionalString (!headersOnly) '' - HACK=$PWD/hack - mkdir $HACK - cp -r ${xnu}/Library/Frameworks/System.framework/Versions/B/PrivateHeaders/net $HACK - + env = lib.optionalAttrs (!headersOnly) { + NIX_CFLAGS_COMPILE = toString [ + "-ISystemConfiguration.framework/Headers" + "-I${xnu}/Library/Frameworks/System.framework/Versions/B/PrivateHeaders" + ]; + }; - substituteInPlace SystemConfiguration.fproj/SCNetworkReachabilityInternal.h \ - --replace '#include <xpc/xpc.h>' "" + patchPhase = lib.optionalString (!headersOnly) '' + substituteInPlace SystemConfiguration.fproj/reachability/SCNetworkReachabilityServer_client.c \ + --replace '#include <xpc/private.h>' "" substituteInPlace SystemConfiguration.fproj/SCNetworkReachability.c \ --replace ''$'#define\tHAVE_VPN_STATUS' "" - substituteInPlace SystemConfiguration.fproj/reachability/SCNetworkReachabilityServer_client.c \ - --replace '#include <xpc/xpc.h>' '#include "fake_xpc.h"' \ - --replace '#include <xpc/private.h>' "" \ - # Our neutered CoreFoundation doesn't have this function, but I think we'll live... substituteInPlace SystemConfiguration.fproj/SCNetworkConnectionPrivate.c \ --replace 'CFPreferencesAppValueIsForced(serviceID, USER_PREFERENCES_APPLICATION_ID)' 'FALSE' \ --replace 'CFPreferencesAppValueIsForced(userPrivate->serviceID, USER_PREFERENCES_APPLICATION_ID)' 'FALSE' - - cat >SystemConfiguration.fproj/fake_xpc.h <<EOF - typedef void *xpc_type_t; - typedef void *xpc_object_t; - typedef void *xpc_connection_t; - - xpc_type_t xpc_get_type(xpc_object_t object); - xpc_object_t xpc_dictionary_create(const char * const *keys, const xpc_object_t *values, size_t count); - char *xpc_copy_description(xpc_object_t object); - int64_t xpc_dictionary_get_int64(xpc_object_t xdict, const char *key); - uint64_t xpc_dictionary_get_uint64(xpc_object_t xdict, const char *key); - void xpc_connection_set_event_handler(xpc_connection_t connection, void *handler); - - extern const struct _xpc_type_s _xpc_type_error; - #define XPC_TYPE_ERROR (&_xpc_type_error) - - extern const struct _xpc_type_s _xpc_type_dictionary; - #define XPC_TYPE_DICTIONARY (&_xpc_type_dictionary) - - extern const struct _xpc_type_s _xpc_type_array; - #define XPC_TYPE_ARRAY (&_xpc_type_array) - - extern const struct _xpc_dictionary_s _xpc_error_connection_interrupted; - #define XPC_ERROR_CONNECTION_INTERRUPTED (&_xpc_error_connection_interrupted) - - extern const struct _xpc_dictionary_s _xpc_error_connection_invalid; - #define XPC_ERROR_CONNECTION_INVALID (&_xpc_error_connection_invalid) - - extern const char *const _xpc_error_key_description; - #define XPC_ERROR_KEY_DESCRIPTION _xpc_error_key_description - - #define XPC_CONNECTION_MACH_SERVICE_PRIVILEGED (1 << 1) - EOF ''; dontBuild = headersOnly; @@ -177,9 +142,9 @@ appleDerivation' stdenv { $CC -I. -Ihelper -Iderived -F. -c DHCP.c -o DHCP.o $CC -I. -Ihelper -Iderived -F. -c moh.c -o moh.o $CC -I. -Ihelper -Iderived -F. -c DeviceOnHold.c -o DeviceOnHold.o - $CC -I. -Ihelper -Iderived -I $HACK -F. -c LinkConfiguration.c -o LinkConfiguration.o + $CC -I. -Ihelper -Iderived -F. -c LinkConfiguration.c -o LinkConfiguration.o $CC -I. -Ihelper -Iderived -F. -c dy_framework.c -o dy_framework.o - $CC -I. -Ihelper -Iderived -I $HACK -F. -c VLANConfiguration.c -o VLANConfiguration.o + $CC -I. -Ihelper -Iderived -F. -c VLANConfiguration.c -o VLANConfiguration.o $CC -I. -Ihelper -Iderived -F. -c derived/configUser.c -o configUser.o $CC -I. -Ihelper -Iderived -F. -c SCPreferencesPathKey.c -o SCPreferencesPathKey.o $CC -I. -Ihelper -Iderived -I../dnsinfo -F. -c derived/shared_dns_infoUser.c -o shared_dns_infoUser.o @@ -188,8 +153,8 @@ appleDerivation' stdenv { $CC -I. -Ihelper -Iderived -F. -c SCNetworkProtocol.c -o SCNetworkProtocol.o $CC -I. -Ihelper -Iderived -F. -c SCNetworkService.c -o SCNetworkService.o $CC -I. -Ihelper -Iderived -F. -c SCNetworkSet.c -o SCNetworkSet.o - $CC -I. -Ihelper -Iderived -I $HACK -F. -c BondConfiguration.c -o BondConfiguration.o - $CC -I. -Ihelper -Iderived -I $HACK -F. -c BridgeConfiguration.c -o BridgeConfiguration.o + $CC -I. -Ihelper -Iderived -F. -c BondConfiguration.c -o BondConfiguration.o + $CC -I. -Ihelper -Iderived -F. -c BridgeConfiguration.c -o BridgeConfiguration.o $CC -I. -Ihelper -Iderived -F. -c helper/SCHelper_client.c -o SCHelper_client.o $CC -I. -Ihelper -Iderived -F. -c SCPreferencesKeychainPrivate.c -o SCPreferencesKeychainPrivate.o $CC -I. -Ihelper -Iderived -F. -c SCNetworkSignature.c -o SCNetworkSignature.o diff --git a/pkgs/os-specific/darwin/apple-source-releases/default.nix b/pkgs/os-specific/darwin/apple-source-releases/default.nix index ba0e5b3b78b9c..40f3fd2478a56 100644 --- a/pkgs/os-specific/darwin/apple-source-releases/default.nix +++ b/pkgs/os-specific/darwin/apple-source-releases/default.nix @@ -248,6 +248,7 @@ developerToolsPackages_11_3_1 // macosPackages_11_0_1 // { CommonCrypto = applePackage "CommonCrypto" "osx-10.12.6" "sha256-FLgODBrfv+XsGaAjddncYAm/BIJJYw6LcwX/z7ncKFM=" {}; configd = applePackage "configd" "osx-10.8.5" "sha256-6I3FWNjTgds5abEcZrD++s9b+P9a2+qUf8KFAb72DwI=" { Security = applePackage "Security/boot.nix" "osx-10.9.5" "sha256-7qr0IamjCXCobIJ6V9KtvbMBkJDfRCy4C5eqpHJlQLI=" {}; + inherit (pkgs.darwin.apple_sdk.libs) xpc; }; copyfile = applePackage "copyfile" "osx-10.12.6" "sha256-uHqLFOIpXK+n0RHyOZzVsP2DDZcFDivKCnqHBaXvHns=" {}; Csu = applePackage "Csu" "osx-10.11.6" "sha256-h6a/sQMEVeFxKNWAPgKBXjWhyL2L2nvX9BQUMaTQ6sY=" {}; @@ -310,6 +311,7 @@ developerToolsPackages_11_3_1 // macosPackages_11_0_1 // { configdHeaders = applePackage "configd" "osx-10.8.5" "sha256-6I3FWNjTgds5abEcZrD++s9b+P9a2+qUf8KFAb72DwI=" { headersOnly = true; Security = null; + xpc = null; }; libutilHeaders = pkgs.darwin.libutil.override { headersOnly = true; }; hfsHeaders = pkgs.darwin.hfs.override { headersOnly = true; }; diff --git a/pkgs/os-specific/darwin/apple-source-releases/xnu/default.nix b/pkgs/os-specific/darwin/apple-source-releases/xnu/default.nix index 262cb3d6a3870..62003a6e4a6ce 100644 --- a/pkgs/os-specific/darwin/apple-source-releases/xnu/default.nix +++ b/pkgs/os-specific/darwin/apple-source-releases/xnu/default.nix @@ -34,7 +34,7 @@ appleDerivation' (if headersOnly then stdenvNoCC else stdenv) ( --replace "-Werror " "" substituteInPlace SETUP/kextsymboltool/Makefile \ - --replace "-lstdc++" "-lc++" + --replace "-lstdc++" "-lc++ -lc++abi" substituteInPlace libsyscall/xcodescripts/mach_install_mig.sh \ --replace "/usr/include" "/include" \ diff --git a/pkgs/os-specific/darwin/cctools/apple.nix b/pkgs/os-specific/darwin/cctools/apple.nix index f8ff90dbb13fa..7adcfa9539a2d 100644 --- a/pkgs/os-specific/darwin/cctools/apple.nix +++ b/pkgs/os-specific/darwin/cctools/apple.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, symlinkJoin, xcbuildHook, tcsh, libobjc, libtapi, libunwind, llvm, memstreamHook, xar }: +{ lib, stdenv, fetchFromGitHub, symlinkJoin, xcbuildHook, tcsh, libobjc, libtapi, libunwind, llvm, memstreamHook, xar }: let @@ -6,9 +6,11 @@ cctools = stdenv.mkDerivation rec { pname = "cctools"; version = "973.0.1"; - src = fetchurl { - url = "https://opensource.apple.com/tarballs/cctools/cctools-${version}.tar.gz"; - hash = "sha256-r/6tsyyfi3R/0cLl+lN/B9ZaOaVF+Z7vJ6xj4LzSgiQ="; + src = fetchFromGitHub { + owner = "apple-oss-distributions"; + repo = "cctools"; + rev = "${pname}-${version}"; + hash = "sha256-0NlDqy3zeg4D0MbDipx0sMYDfzYa63Jxfsckzz/928o="; }; patches = [ @@ -60,9 +62,11 @@ ld64 = stdenv.mkDerivation rec { pname = "ld64"; version = "609"; - src = fetchurl { - url = "https://opensource.apple.com/tarballs/ld64/ld64-${version}.tar.gz"; - hash = "sha256-SqQ7SqmK+uOPijzxOTqtkEu3qYmcth6H7rrQ03R1Q+4="; + src = fetchFromGitHub { + owner = "apple-oss-distributions"; + repo = "ld64"; + rev = "${pname}-${version}"; + hash = "sha256-WAaphem6NS4eCHL/pISlDXnO1CDYTgSrVGzcothh4/Q="; }; postPatch = '' diff --git a/pkgs/os-specific/darwin/rewrite-tbd/default.nix b/pkgs/os-specific/darwin/rewrite-tbd/default.nix index e5ef118e514ce..5cf63754dfbb9 100644 --- a/pkgs/os-specific/darwin/rewrite-tbd/default.nix +++ b/pkgs/os-specific/darwin/rewrite-tbd/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchFromGitHub, cmake, pkg-config, libyaml }: +{ stdenv, lib, fetchFromGitHub, libyaml }: stdenv.mkDerivation { pname = "rewrite-tbd"; @@ -11,9 +11,17 @@ stdenv.mkDerivation { sha256 = "08sk91zwj6n9x2ymwid2k7y0rwv5b7p6h1b25ipx1dv0i43p6v1a"; }; - nativeBuildInputs = [ cmake pkg-config ]; + # Nix takes care of these paths. Avoiding the use of `pkg-config` prevents an infinite recursion. + postPatch = '' + substituteInPlace Makefile.boot \ + --replace '$(shell pkg-config --cflags yaml-0.1)' "" \ + --replace '$(shell pkg-config --libs yaml-0.1)' "-lyaml" + ''; + buildInputs = [ libyaml ]; + makeFlags = [ "-f" "Makefile.boot" "PREFIX=${placeholder "out"}"]; + meta = with lib; { homepage = "https://github.com/thefloweringash/rewrite-tbd/"; description = "Rewrite filepath in .tbd to Nix applicable format"; diff --git a/pkgs/os-specific/linux/alsa-project/alsa-lib/default.nix b/pkgs/os-specific/linux/alsa-project/alsa-lib/default.nix index 560f2bf301474..f0eb349060735 100644 --- a/pkgs/os-specific/linux/alsa-project/alsa-lib/default.nix +++ b/pkgs/os-specific/linux/alsa-project/alsa-lib/default.nix @@ -8,11 +8,11 @@ stdenv.mkDerivation (finalAttrs: { pname = "alsa-lib"; - version = "1.2.8"; + version = "1.2.9"; src = fetchurl { url = "mirror://alsa/lib/${finalAttrs.pname}-${finalAttrs.version}.tar.bz2"; - hash = "sha256-GrAbdOM0JcqZwuNsCET9aIgnMZO9iYJA/o+TrMvL80c="; + hash = "sha256-3JxkP9xMz9BXLMaFhY3UHgivtYPzBGCzF+QYgnX2FbI="; }; patches = [ diff --git a/pkgs/os-specific/linux/apfs/default.nix b/pkgs/os-specific/linux/apfs/default.nix index 1f0cc74f98146..70c344903f543 100644 --- a/pkgs/os-specific/linux/apfs/default.nix +++ b/pkgs/os-specific/linux/apfs/default.nix @@ -6,7 +6,7 @@ }: let - tag = "0.3.1"; + tag = "0.3.3"; in stdenv.mkDerivation { pname = "apfs"; @@ -16,7 +16,7 @@ stdenv.mkDerivation { owner = "linux-apfs"; repo = "linux-apfs-rw"; rev = "v${tag}"; - sha256 = "sha256-KYPZsCAEqJl0VjV/TmJWi20Y7yApIJH0YMwQIL80Ep4="; + hash = "sha256-dxbpJ9Jdn8u16yD001zCZxrr/nPbxdpF7JvU+oD+hTw="; }; hardeningDisable = [ "pic" ]; diff --git a/pkgs/os-specific/linux/apparmor/default.nix b/pkgs/os-specific/linux/apparmor/default.nix index c71980d94373d..33cdc0fb84500 100644 --- a/pkgs/os-specific/linux/apparmor/default.nix +++ b/pkgs/os-specific/linux/apparmor/default.nix @@ -22,7 +22,7 @@ }: let - apparmor-version = "3.1.3"; + apparmor-version = "3.1.4"; apparmor-meta = component: with lib; { homepage = "https://apparmor.net/"; @@ -36,7 +36,7 @@ let owner = "apparmor"; repo = "apparmor"; rev = "v${apparmor-version}"; - hash = "sha256-6N1BStOXKui6BxSriWVoOkvyGRUJ4btsloHh/SsG/JE="; + hash = "sha256-YWPdIUd+2x74tqiW+YX8NKh3jxSKhD+5zdiDMjhPzpE="; }; aa-teardown = writeShellScript "aa-teardown" '' diff --git a/pkgs/os-specific/linux/audit/fix-static.patch b/pkgs/os-specific/linux/audit/000-fix-static-attribute-malloc.diff index ce76fc3b87a55..ce76fc3b87a55 100644 --- a/pkgs/os-specific/linux/audit/fix-static.patch +++ b/pkgs/os-specific/linux/audit/000-fix-static-attribute-malloc.diff diff --git a/pkgs/os-specific/linux/audit/001-ignore-flexible-array.patch b/pkgs/os-specific/linux/audit/001-ignore-flexible-array.patch new file mode 100644 index 0000000000000..e072cc942cfbf --- /dev/null +++ b/pkgs/os-specific/linux/audit/001-ignore-flexible-array.patch @@ -0,0 +1,35 @@ +From beed138222421a2eb4212d83cb889404bd7efc49 Mon Sep 17 00:00:00 2001 +From: Sergei Trofimovich <slyich@gmail.com> +Date: Wed, 23 Mar 2022 07:27:05 +0000 +Subject: [PATCH] auditswig.i: avoid setter generation for audit_rule_data::buf + +As it's a flexible array generated code was never safe to use. +With kernel's https://git.kernel.org/pub/scm/linux/kernel/git/torvalds/linux.git/commit/?id=ed98ea2128b6fd83bce13716edf8f5fe6c47f574 +change it's a build failure now: + + audit> audit_wrap.c:5010:15: error: invalid use of flexible array member + audit> 5010 | arg1->buf = (char [])(char *)memcpy(malloc((size)*sizeof(char)), (const char *)(arg2), sizeof(char)*(size)); + audit> | ^ + +Let's avoid setter generation entirely. + +Closes: https://github.com/linux-audit/audit-userspace/issues/252 +--- + bindings/swig/src/auditswig.i | 4 ++++ + 1 file changed, 4 insertions(+) + +diff --git a/bindings/swig/src/auditswig.i b/bindings/swig/src/auditswig.i +index 21aafca31..9a2c5661d 100644 +--- a/bindings/swig/src/auditswig.i ++++ b/bindings/swig/src/auditswig.i +@@ -39,6 +39,10 @@ signed + #define __attribute(X) /*nothing*/ + typedef unsigned __u32; + typedef unsigned uid_t; ++/* Sidestep SWIG's limitation of handling c99 Flexible arrays by not: ++ * generating setters against them: https://github.com/swig/swig/issues/1699 ++ */ ++%ignore audit_rule_data::buf; + %include "/usr/include/linux/audit.h" + #define __extension__ /*nothing*/ + %include <stdint.i> diff --git a/pkgs/os-specific/linux/audit/default.nix b/pkgs/os-specific/linux/audit/default.nix index 34043ce083c61..0fd96892013db 100644 --- a/pkgs/os-specific/linux/audit/default.nix +++ b/pkgs/os-specific/linux/audit/default.nix @@ -1,65 +1,79 @@ -{ - lib, stdenv, buildPackages, fetchurl, fetchpatch, - runCommand, - autoreconfHook, - autoconf, automake, libtool, bash, - # Enabling python support while cross compiling would be possible, but - # the configure script tries executing python to gather info instead of - # relying on python3-config exclusively - enablePython ? stdenv.hostPlatform == stdenv.buildPlatform, python3, swig, - linuxHeaders ? stdenv.cc.libc.linuxHeaders +{ lib +, stdenv +, fetchurl +, fetchpatch +, autoreconfHook +, bash +, buildPackages +, libtool +, linuxHeaders +, python3 +, swig + +# Enabling python support while cross compiling would be possible, but the +# configure script tries executing python to gather info instead of relying on +# python3-config exclusively +, enablePython ? stdenv.hostPlatform == stdenv.buildPlatform, }: -stdenv.mkDerivation rec { +stdenv.mkDerivation (finalAttrs: { pname = "audit"; - version = "3.1"; + version = "3.1.1"; src = fetchurl { - url = "https://people.redhat.com/sgrubb/audit/audit-${version}.tar.gz"; - sha256 = "sha256-tc882rsnhsCLHeNZmjsaVH5V96n5wesgePW0TPROg3g="; + url = "https://people.redhat.com/sgrubb/audit/audit-${finalAttrs.version}.tar.gz"; + hash = "sha256-RuRrN2I8zgnm7hNOeNZor8NPThyHDIU+8S5BkweM/oc="; }; + patches = [ + ./000-fix-static-attribute-malloc.diff + ./001-ignore-flexible-array.patch + ]; + + postPatch = '' + sed -i 's,#include <sys/poll.h>,#include <poll.h>\n#include <limits.h>,' audisp/audispd.c + substituteInPlace bindings/swig/src/auditswig.i \ + --replace "/usr/include/linux/audit.h" \ + "${linuxHeaders}/include/linux/audit.h" + ''; + outputs = [ "bin" "dev" "out" "man" ]; strictDeps = true; - depsBuildBuild = [ buildPackages.stdenv.cc ]; - nativeBuildInputs = [ autoreconfHook ] - ++ lib.optionals enablePython [ python3 swig ]; - buildInputs = [ bash ]; + + depsBuildBuild = [ + buildPackages.stdenv.cc + ]; + + nativeBuildInputs = [ + autoreconfHook + ] + ++ lib.optionals enablePython [ + python3 + swig + ]; + + buildInputs = [ + bash + ]; configureFlags = [ - # z/OS plugin is not useful on Linux, - # and pulls in an extra openldap dependency otherwise + # z/OS plugin is not useful on Linux, and pulls in an extra openldap + # dependency otherwise "--disable-zos-remote" - (if enablePython then "--with-python" else "--without-python") "--with-arm" "--with-aarch64" + (if enablePython then "--with-python" else "--without-python") ]; enableParallelBuilding = true; - patches = [ - ./fix-static.patch - - # Fix pending upstream inclusion for linux-headers-5.17 support: - # https://github.com/linux-audit/audit-userspace/pull/253 - (fetchpatch { - name = "ignore-flexible-array.patch"; - url = "https://github.com/linux-audit/audit-userspace/commit/beed138222421a2eb4212d83cb889404bd7efc49.patch"; - sha256 = "1hf02zaxv6x0wmn4ca9fj48y2shks7vfna43i1zz58xw9jq7sza0"; - }) - ]; - postPatch = '' - sed -i 's,#include <sys/poll.h>,#include <poll.h>\n#include <limits.h>,' audisp/audispd.c - substituteInPlace bindings/swig/src/auditswig.i \ - --replace "/usr/include/linux/audit.h" \ - "${linuxHeaders}/include/linux/audit.h" - ''; meta = { - description = "Audit Library"; homepage = "https://people.redhat.com/sgrubb/audit/"; - license = lib.licenses.gpl2; + description = "Audit Library"; + changelog = "https://github.com/linux-audit/audit-userspace/releases/tag/v${finalAttrs.version}"; + license = lib.licenses.gpl2Plus; + maintainers = with lib.maintainers; [ AndersonTorres ]; platforms = lib.platforms.linux; - maintainers = with lib.maintainers; [ ]; }; -} +}) diff --git a/pkgs/os-specific/linux/ax99100/default.nix b/pkgs/os-specific/linux/ax99100/default.nix index 9ff6add9fe9ea..91999c0113c65 100644 --- a/pkgs/os-specific/linux/ax99100/default.nix +++ b/pkgs/os-specific/linux/ax99100/default.nix @@ -1,6 +1,6 @@ -{ kernel, stdenv, kmod, lib, fetchzip, fetchpatch, dos2unix }: -stdenv.mkDerivation -{ +{ kernel, stdenv, kmod, lib, fetchzip, dos2unix }: + +stdenv.mkDerivation { pname = "ax99100"; version = "1.8.0"; @@ -26,9 +26,9 @@ stdenv.mkDerivation patches = [ ./kernel-5.18-pci_free_consistent-pci_alloc_consistent.patch ./kernel-6.1-set_termios-const-ktermios.patch - ] ++ (lib.optional (lib.versionAtLeast kernel.version "6.2") [ + ] ++ lib.optionals (lib.versionAtLeast kernel.version "6.2") [ ./kernel-6.2-fix-pointer-type.patch - ]); + ]; patchFlags = [ "-p0" ]; diff --git a/pkgs/os-specific/linux/ell/default.nix b/pkgs/os-specific/linux/ell/default.nix index 0dd9fcb45bf4d..bde39a41b525b 100644 --- a/pkgs/os-specific/linux/ell/default.nix +++ b/pkgs/os-specific/linux/ell/default.nix @@ -7,14 +7,14 @@ stdenv.mkDerivation rec { pname = "ell"; - version = "0.56"; + version = "0.57"; outputs = [ "out" "dev" ]; src = fetchgit { url = "https://git.kernel.org/pub/scm/libs/ell/ell.git"; rev = version; - sha256 = "sha256-aCQ7I4XgxswQRfzzZG3MYe+W3dPWWex5MErMc0ZilSA="; + sha256 = "sha256-9d9WMCByQ1TKWpzWe5msts1LG+BKKqwCgaMBbD74/+4="; }; nativeBuildInputs = [ diff --git a/pkgs/os-specific/linux/intel-cmt-cat/default.nix b/pkgs/os-specific/linux/intel-cmt-cat/default.nix index 16cb022eb6f25..e110d201a2db1 100644 --- a/pkgs/os-specific/linux/intel-cmt-cat/default.nix +++ b/pkgs/os-specific/linux/intel-cmt-cat/default.nix @@ -1,14 +1,14 @@ { lib, stdenv, fetchFromGitHub }: stdenv.mkDerivation rec { - version = "4.5.0"; + version = "4.6.0"; pname = "intel-cmt-cat"; src = fetchFromGitHub { owner = "intel"; repo = "intel-cmt-cat"; rev = "v${version}"; - sha256 = "sha256-gjJtwEDvPW0JDwlIUXSmv1wm4TknKsE/BLKHiqIgjho="; + sha256 = "sha256-Bw/WY30ytvwBo+OZ27WG2aY3YN9xczdjs4jcHR/Tv/w="; }; enableParallelBuilding = true; diff --git a/pkgs/os-specific/linux/intel-compute-runtime/default.nix b/pkgs/os-specific/linux/intel-compute-runtime/default.nix index 9bdad84e5a818..fe1bb139a10b4 100644 --- a/pkgs/os-specific/linux/intel-compute-runtime/default.nix +++ b/pkgs/os-specific/linux/intel-compute-runtime/default.nix @@ -12,13 +12,13 @@ stdenv.mkDerivation rec { pname = "intel-compute-runtime"; - version = "23.13.26032.30"; + version = "23.17.26241.15"; src = fetchFromGitHub { owner = "intel"; repo = "compute-runtime"; rev = version; - sha256 = "sha256-KaU+11lY/chCySao1vLOejDJ9i4yjYWxaz0pzd8lWNY="; + sha256 = "sha256-A0gtSM6e+VcfcGG/6zReV2LIXq6tGbWIwDQFlQ2TW28="; }; nativeBuildInputs = [ cmake pkg-config ]; diff --git a/pkgs/os-specific/linux/kernel-headers/default.nix b/pkgs/os-specific/linux/kernel-headers/default.nix index 719b9a1216c73..83ad463239a1e 100644 --- a/pkgs/os-specific/linux/kernel-headers/default.nix +++ b/pkgs/os-specific/linux/kernel-headers/default.nix @@ -111,12 +111,12 @@ let in { inherit makeLinuxHeaders; - linuxHeaders = let version = "6.2"; in + linuxHeaders = let version = "6.3"; in makeLinuxHeaders { inherit version; src = fetchurl { url = "mirror://kernel/linux/kernel/v${lib.versions.major version}.x/linux-${version}.tar.xz"; - hash = "sha256-dIYvqKtA7a6FuzOFwLcf4QMoi85RhSbWMZeACzy97LE="; + hash = "sha256-ujSR9e1r0nCjcMRAQ049aQhfzdUoki+gHnPXZX23Ox4="; }; patches = [ ./no-relocs.patch # for building x86 kernel headers on non-ELF platforms diff --git a/pkgs/os-specific/linux/kernel/fix-em-ice-bonding.patch b/pkgs/os-specific/linux/kernel/fix-em-ice-bonding.patch deleted file mode 100644 index 2b59a508fdac0..0000000000000 --- a/pkgs/os-specific/linux/kernel/fix-em-ice-bonding.patch +++ /dev/null @@ -1,87 +0,0 @@ -From 1640688018f329559c61352646f283f98938af31 Mon Sep 17 00:00:00 2001 -From: Cole Helbling <cole.helbling@determinate.systems> -Date: Thu, 16 Feb 2023 09:30:21 -0800 -Subject: [PATCH] Revert "RDMA/irdma: Report the correct link speed" - -This reverts commit 425c9bd06b7a70796d880828d15c11321bdfb76d. - -Some Equinix Metal instances, such as a3.large.x86, m3.large.x86 -(specific hardware revisions), and n3.large.x86, use the `ice` kernel -driver for their network cards, in conjunction with bonded devices. -However, this commit caused a regression where these bonded devices -would deadlock. This was initially reported by Jaroslav Pulchart on -the netdev mailing list[1], and there were follow-up patches from Dave -Ertman[2][3] that attempted to fix this but were not up to snuff for -various reasons[4]. - -Specifically, v2 of the patch ([3]) appears to fix the issue on some -devices (tested with 8086:159B network cards), while it is still broken -on others (such as an 8086:1593 network card). - -We revert the patch exposing the issue until upstream has a working -solution in order to make Equinix Metal instances work reliably again. - -[1]: https://lore.kernel.org/netdev/CAK8fFZ6A_Gphw_3-QMGKEFQk=sfCw1Qmq0TVZK3rtAi7vb621A@mail.gmail.com/ -[2]: https://patchwork.ozlabs.org/project/intel-wired-lan/patch/20230111183145.1497367-1-david.m.ertman@intel.com/ -[3]: https://patchwork.ozlabs.org/project/intel-wired-lan/patch/20230215191757.1826508-1-david.m.ertman@intel.com/ -[4]: https://lore.kernel.org/netdev/cb31a911-ba80-e2dc-231f-851757cfd0b8@intel.com/T/#m6e53f8c43093693c10268140126abe99e082dc1c ---- - drivers/infiniband/hw/irdma/verbs.c | 35 ++++++++++++++++++++++++++--- - 1 file changed, 32 insertions(+), 3 deletions(-) - -diff --git a/drivers/infiniband/hw/irdma/verbs.c b/drivers/infiniband/hw/irdma/verbs.c -index c5971a840b87..911902d2b93e 100644 ---- a/drivers/infiniband/hw/irdma/verbs.c -+++ b/drivers/infiniband/hw/irdma/verbs.c -@@ -60,6 +60,36 @@ static int irdma_query_device(struct ib_device *ibdev, - return 0; - } - -+/** -+ * irdma_get_eth_speed_and_width - Get IB port speed and width from netdev speed -+ * @link_speed: netdev phy link speed -+ * @active_speed: IB port speed -+ * @active_width: IB port width -+ */ -+static void irdma_get_eth_speed_and_width(u32 link_speed, u16 *active_speed, -+ u8 *active_width) -+{ -+ if (link_speed <= SPEED_1000) { -+ *active_width = IB_WIDTH_1X; -+ *active_speed = IB_SPEED_SDR; -+ } else if (link_speed <= SPEED_10000) { -+ *active_width = IB_WIDTH_1X; -+ *active_speed = IB_SPEED_FDR10; -+ } else if (link_speed <= SPEED_20000) { -+ *active_width = IB_WIDTH_4X; -+ *active_speed = IB_SPEED_DDR; -+ } else if (link_speed <= SPEED_25000) { -+ *active_width = IB_WIDTH_1X; -+ *active_speed = IB_SPEED_EDR; -+ } else if (link_speed <= SPEED_40000) { -+ *active_width = IB_WIDTH_4X; -+ *active_speed = IB_SPEED_FDR10; -+ } else { -+ *active_width = IB_WIDTH_4X; -+ *active_speed = IB_SPEED_EDR; -+ } -+} -+ - /** - * irdma_query_port - get port attributes - * @ibdev: device pointer from stack -@@ -87,9 +117,8 @@ static int irdma_query_port(struct ib_device *ibdev, u32 port, - props->state = IB_PORT_DOWN; - props->phys_state = IB_PORT_PHYS_STATE_DISABLED; - } -- -- ib_get_eth_speed(ibdev, port, &props->active_speed, -- &props->active_width); -+ irdma_get_eth_speed_and_width(SPEED_100000, &props->active_speed, -+ &props->active_width); - - if (rdma_protocol_roce(ibdev, 1)) { - props->gid_tbl_len = 32; --- -2.39.0 - diff --git a/pkgs/os-specific/linux/kernel/generic.nix b/pkgs/os-specific/linux/kernel/generic.nix index 56d89f67c64a9..6605213490539 100644 --- a/pkgs/os-specific/linux/kernel/generic.nix +++ b/pkgs/os-specific/linux/kernel/generic.nix @@ -47,7 +47,7 @@ # symbolic name and `patch' is the actual patch. The patch may # optionally be compressed with gzip or bzip2. kernelPatches ? [] -, ignoreConfigErrors ? stdenv.hostPlatform.linux-kernel.name != "pc" +, ignoreConfigErrors ? stdenv.hostPlatform.linux-kernel.name or "" != "pc" , extraMeta ? {} , isZen ? false @@ -55,7 +55,7 @@ , isHardened ? false # easy overrides to stdenv.hostPlatform.linux-kernel members -, autoModules ? stdenv.hostPlatform.linux-kernel.autoModules +, autoModules ? stdenv.hostPlatform.linux-kernel.autoModules or true , preferBuiltin ? stdenv.hostPlatform.linux-kernel.preferBuiltin or false , kernelArch ? stdenv.hostPlatform.linuxArch , kernelTests ? [] @@ -128,11 +128,8 @@ let ++ lib.optionals (lib.versionAtLeast version "4.16") [ bison flex ] ++ lib.optional (lib.versionAtLeast version "5.2") pahole; - platformName = stdenv.hostPlatform.linux-kernel.name; # e.g. "defconfig" - kernelBaseConfig = if defconfig != null then defconfig else stdenv.hostPlatform.linux-kernel.baseConfig; - # e.g. "bzImage" - kernelTarget = stdenv.hostPlatform.linux-kernel.target; + kernelBaseConfig = if defconfig != null then defconfig else stdenv.hostPlatform.linux-kernel.baseConfig or "defconfig"; makeFlags = lib.optionals (stdenv.hostPlatform.linux-kernel ? makeFlags) stdenv.hostPlatform.linux-kernel.makeFlags ++ extraMakeFlags; diff --git a/pkgs/os-specific/linux/kernel/hardened/patches.json b/pkgs/os-specific/linux/kernel/hardened/patches.json index 39cce36382f7b..c906338061dd7 100644 --- a/pkgs/os-specific/linux/kernel/hardened/patches.json +++ b/pkgs/os-specific/linux/kernel/hardened/patches.json @@ -2,61 +2,61 @@ "4.14": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-4.14.314-hardened1.patch", - "sha256": "08d0mkkc22apdy0m0z5qkkl4xb8d9is0ip3v8rb47bqybmxx879h", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.14.314-hardened1/linux-hardened-4.14.314-hardened1.patch" + "name": "linux-hardened-4.14.315-hardened1.patch", + "sha256": "0mix8ycd46j53k2q1k3cpmz7kvd2p35gy2xkyrqxyqljrdfsz7wg", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.14.315-hardened1/linux-hardened-4.14.315-hardened1.patch" }, - "sha256": "0lwiykv2ci7lrjvvykbiqavzzizdkf8xxqlybixi9l1as7q02v47", - "version": "4.14.314" + "sha256": "17f9cbinysazllrxkv1qlhgi3x61isi7jqrv0qlfpjh69k1waim3", + "version": "4.14.315" }, "4.19": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-4.19.282-hardened1.patch", - "sha256": "1zy3hk5aykyw8nngzjb46i6q1i4sll5qhskycdhji9ga3wbl4z97", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.19.282-hardened1/linux-hardened-4.19.282-hardened1.patch" + "name": "linux-hardened-4.19.283-hardened1.patch", + "sha256": "0yhb49w7bfsx3i3nc8wawjbzq4dzyh29wqhpkrmk42fzhwsp4lc5", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.19.283-hardened1/linux-hardened-4.19.283-hardened1.patch" }, - "sha256": "02z20879xl4ya957by1p35vi1a7myzxwiqd9cnvm541sgnci99a3", - "version": "4.19.282" + "sha256": "1x2irhiv20aq2mrgqyz18d147shbmghwfxq4qi0sv5vc1k91cwq4", + "version": "4.19.283" }, "5.10": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.10.179-hardened1.patch", - "sha256": "0mjfk6b6wvr6646sbl47rhs5jjbmnhfx9wkw44apy92l7mnk983r", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.10.179-hardened1/linux-hardened-5.10.179-hardened1.patch" + "name": "linux-hardened-5.10.180-hardened1.patch", + "sha256": "0ks0bcprycylnsq7xdrp7phsi2jjmw7il1k7jwbjqs6irhn5p4dd", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.10.180-hardened1/linux-hardened-5.10.180-hardened1.patch" }, - "sha256": "0abylcqbzpxxh45kmvd9i2cig64aajz87j5c8vm3w1ab2mf49g8v", - "version": "5.10.179" + "sha256": "0a8cicvcyl5w4vi7gxhgd59ny44gj9cbv4z5pnwn9jgny55rm0ys", + "version": "5.10.180" }, "5.15": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.15.111-hardened1.patch", - "sha256": "1d1myj6jv21pyhcw1nalhd2l9kfdrqgnkhs2wb1dh0nwvmw6qrn3", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.15.111-hardened1/linux-hardened-5.15.111-hardened1.patch" + "name": "linux-hardened-5.15.112-hardened1.patch", + "sha256": "0126p9s0flz544y8j8gjcx96mrivcr88lrzvmgyhly8dz06bwksb", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.15.112-hardened1/linux-hardened-5.15.112-hardened1.patch" }, - "sha256": "1hmfvii77w70dx1lsfigc7nmjblvs1q131q48didsn01khjymkkp", - "version": "5.15.111" + "sha256": "0lfnd8mpb3nzvd0gk0jbls3zx7y5kskc4kgccjgkc34flgdyps5h", + "version": "5.15.112" }, "5.4": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.4.242-hardened1.patch", - "sha256": "1g2szikq3ac3gshvglvda6chirv2al43sq6byach1hg2sddbxsx0", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.4.242-hardened1/linux-hardened-5.4.242-hardened1.patch" + "name": "linux-hardened-5.4.243-hardened1.patch", + "sha256": "04xnfqxxfs1cbq5ynly1vgwjdhnjf3b34yirk3cqffrwwlcba3db", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.4.243-hardened1/linux-hardened-5.4.243-hardened1.patch" }, - "sha256": "0a7wfi84p74qsnbj1vamz4qxzp94v054jp1csyfl0blz3knrlbql", - "version": "5.4.242" + "sha256": "017b1xhmjpmiq48pzzx36wn6jwwgaq2kgia51h7pxr7fxr7ndky3", + "version": "5.4.243" }, "6.1": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-6.1.28-hardened1.patch", - "sha256": "0mywgd0xpy5x882sg9s2dp10m3vknjyqa87lgq76am7r6r7fbazp", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/6.1.28-hardened1/linux-hardened-6.1.28-hardened1.patch" + "name": "linux-hardened-6.1.29-hardened1.patch", + "sha256": "09g7hk30hdjgbni02k4zrzh8i2lhcmb6fbif6n101wmcrnrf8c80", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/6.1.29-hardened1/linux-hardened-6.1.29-hardened1.patch" }, - "sha256": "1w56qgf1vgk3dmh4xw6699kjm5pdqvyfzr19ah5yy3xj50a4q2bs", - "version": "6.1.28" + "sha256": "1yzwp0496j63c6lhvsni1ynr8b2cpn552pli3nd3fdk0pp4nqwqy", + "version": "6.1.29" } } diff --git a/pkgs/os-specific/linux/kernel/linux-4.14.nix b/pkgs/os-specific/linux/kernel/linux-4.14.nix index 7a7ea25d6e852..424561d455b55 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.14.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.14.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "4.14.315"; + version = "4.14.316"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = versions.pad 3 version; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "17f9cbinysazllrxkv1qlhgi3x61isi7jqrv0qlfpjh69k1waim3"; + sha256 = "0xlg93va7dbz2w428kiw7vr2sds3542fqq57rwyf51ykq7qii0xc"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.19.nix b/pkgs/os-specific/linux/kernel/linux-4.19.nix index acef069680694..7126a39754447 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.19.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.19.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "4.19.283"; + version = "4.19.284"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = versions.pad 3 version; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1x2irhiv20aq2mrgqyz18d147shbmghwfxq4qi0sv5vc1k91cwq4"; + sha256 = "0gnhgxcpx9s96wa3dqgxmdjb7x12i94yh0gmv7k9nbz5qwhfxfbz"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-5.10.nix b/pkgs/os-specific/linux/kernel/linux-5.10.nix index 25b31b52f7bf3..df9ab8a61089c 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.10.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.10.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.10.180"; + version = "5.10.181"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = versions.pad 3 version; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "0a8cicvcyl5w4vi7gxhgd59ny44gj9cbv4z5pnwn9jgny55rm0ys"; + sha256 = "1rx43dkxspris9529vl11blzhvsxnpaqr6yb3fy089az7yvwxrmc"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-5.15.nix b/pkgs/os-specific/linux/kernel/linux-5.15.nix index f0cadba30a02f..0530914de7232 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.15.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.15.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.15.113"; + version = "5.15.114"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = versions.pad 3 version; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "1jmrnd0ri75gl0k80g93zqyg00lbf1gqai3dga383ms92799hkja"; + sha256 = "1lkpa9wv1qj90qdzzi71qf5dyy7mi95fixx3ymdp6xwz45fym0g9"; }; } // (args.argsOverride or { })) diff --git a/pkgs/os-specific/linux/kernel/linux-5.4.nix b/pkgs/os-specific/linux/kernel/linux-5.4.nix index 07dadc9e7ade1..0369a421e979e 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.4.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.4.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.4.243"; + version = "5.4.244"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = versions.pad 3 version; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "017b1xhmjpmiq48pzzx36wn6jwwgaq2kgia51h7pxr7fxr7ndky3"; + sha256 = "06x20aq7bv86ghv2sdsz3q2rmqh8h389x5zksr53fyzdjl72ixch"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-6.1.nix b/pkgs/os-specific/linux/kernel/linux-6.1.nix index 1bdb9aac5cf1f..26063a44e16ea 100644 --- a/pkgs/os-specific/linux/kernel/linux-6.1.nix +++ b/pkgs/os-specific/linux/kernel/linux-6.1.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "6.1.30"; + version = "6.1.31"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = versions.pad 3 version; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v6.x/linux-${version}.tar.xz"; - sha256 = "04w8c2j3gfxmn3gc270cmqsxcyp8nm7mi5l268jwpg4yrb259whv"; + sha256 = "1hbkw290kmf1dj8a255ik1gk5fk458c88m348dwrc3lrl6xifsg8"; }; } // (args.argsOverride or { })) diff --git a/pkgs/os-specific/linux/kernel/linux-6.3.nix b/pkgs/os-specific/linux/kernel/linux-6.3.nix index c57a265cffd44..edb5f5a006334 100644 --- a/pkgs/os-specific/linux/kernel/linux-6.3.nix +++ b/pkgs/os-specific/linux/kernel/linux-6.3.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "6.3.4"; + version = "6.3.5"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = versions.pad 3 version; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v6.x/linux-${version}.tar.xz"; - sha256 = "1s385fvhpzzlh97gv1dj82p52w0fdsjga7hbs03ycfkbxll7aqnq"; + sha256 = "0pl2zypsmrnna69850jadccffxwg9xdfkldg0sv8m44b7n64gkgm"; }; } // (args.argsOverride or { })) diff --git a/pkgs/os-specific/linux/kernel/linux-libre.nix b/pkgs/os-specific/linux/kernel/linux-libre.nix index ff40cf6bb795a..04b8d56c57c20 100644 --- a/pkgs/os-specific/linux/kernel/linux-libre.nix +++ b/pkgs/os-specific/linux/kernel/linux-libre.nix @@ -1,8 +1,8 @@ { stdenv, lib, fetchsvn, linux , scripts ? fetchsvn { url = "https://www.fsfla.org/svn/fsfla/software/linux-libre/releases/branches/"; - rev = "19299"; - sha256 = "1sqygvk81p0wfssjswz4hg2mqx9ak8a515rdzwf1a7n728sway7l"; + rev = "19308"; + sha256 = "1rhg43z4fyyac12c1z9h83xlh7ar0k2lfzrs40q061jlmx8mkpbb"; } , ... }: diff --git a/pkgs/os-specific/linux/kernel/linux-rt-5.15.nix b/pkgs/os-specific/linux/kernel/linux-rt-5.15.nix index 6ffe60b4ee1f6..53f9426904ac3 100644 --- a/pkgs/os-specific/linux/kernel/linux-rt-5.15.nix +++ b/pkgs/os-specific/linux/kernel/linux-rt-5.15.nix @@ -6,7 +6,7 @@ , ... } @ args: let - version = "5.15.111-rt63"; # updated by ./update-rt.sh + version = "5.15.113-rt64"; # updated by ./update-rt.sh branch = lib.versions.majorMinor version; kversion = builtins.elemAt (lib.splitString "-" version) 0; in buildLinux (args // { @@ -18,14 +18,14 @@ in buildLinux (args // { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${kversion}.tar.xz"; - sha256 = "1hmfvii77w70dx1lsfigc7nmjblvs1q131q48didsn01khjymkkp"; + sha256 = "1jmrnd0ri75gl0k80g93zqyg00lbf1gqai3dga383ms92799hkja"; }; kernelPatches = let rt-patch = { name = "rt"; patch = fetchurl { url = "mirror://kernel/linux/kernel/projects/rt/${branch}/older/patch-${version}.patch.xz"; - sha256 = "1jixgqzyns56804dsjkg9n04mbaqrgwvsbgv5jxi2mip1p8spm8s"; + sha256 = "0nxnviivsshs20zh8px657mr31wfsjdy70z793f56bf9s2m4kl31"; }; }; in [ rt-patch ] ++ kernelPatches; diff --git a/pkgs/os-specific/linux/kernel/linux-testing.nix b/pkgs/os-specific/linux/kernel/linux-testing.nix index d01d9d4d78e53..e30689cdd3ea9 100644 --- a/pkgs/os-specific/linux/kernel/linux-testing.nix +++ b/pkgs/os-specific/linux/kernel/linux-testing.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "6.4-rc3"; + version = "6.4-rc4"; extraMeta.branch = lib.versions.majorMinor version; # modDirVersion needs to be x.y.z, will always add .0 @@ -11,7 +11,7 @@ buildLinux (args // rec { src = fetchzip { url = "https://git.kernel.org/torvalds/t/linux-${version}.tar.gz"; - hash = "sha256-twGP2zNNkxJy32wCCMlkGtV1xco05FeW2s3wljwB1eM="; + hash = "sha256-PlxGRb4wKjamEDrSWpKXLxa7aX9lQoDgrjjrWhArisk="; }; # Should the testing kernels ever be built on Hydra? diff --git a/pkgs/os-specific/linux/kernel/manual-config.nix b/pkgs/os-specific/linux/kernel/manual-config.nix index 6d1ad766d6849..d7ea4ac2c4988 100644 --- a/pkgs/os-specific/linux/kernel/manual-config.nix +++ b/pkgs/os-specific/linux/kernel/manual-config.nix @@ -1,5 +1,5 @@ { lib, stdenv, buildPackages, runCommand, nettools, bc, bison, flex, perl, rsync, gmp, libmpc, mpfr, openssl -, libelf, cpio, elfutils, zstd, python3Minimal, zlib, pahole +, libelf, cpio, elfutils, zstd, python3Minimal, zlib, pahole, ubootTools , fetchpatch }: @@ -87,7 +87,8 @@ let isModular = config.isYes "MODULES"; - kernelConf = stdenv.hostPlatform.linux-kernel; + kernelConf = stdenv.hostPlatform.linux-kernel; + target = kernelConf.target or "vmlinux"; buildDTBs = kernelConf.DTB or false; in @@ -100,13 +101,13 @@ stdenv.mkDerivation ({ inherit version src; depsBuildBuild = [ buildPackages.stdenv.cc ]; - nativeBuildInputs = [ perl bc nettools openssl rsync gmp libmpc mpfr zstd python3Minimal ] - ++ optional (kernelConf.target == "uImage") buildPackages.ubootTools - ++ optional (lib.versionOlder version "5.8") libelf - ++ optionals (lib.versionAtLeast version "4.16") [ bison flex ] - ++ optionals (lib.versionAtLeast version "5.2") [ cpio pahole zlib ] - ++ optional (lib.versionAtLeast version "5.8") elfutils - ; + nativeBuildInputs = [ + bc gmp libmpc mpfr nettools openssl perl python3Minimal rsync ubootTools + zstd + ] ++ optional (lib.versionOlder version "5.8") libelf + ++ optionals (lib.versionAtLeast version "4.16") [ bison flex ] + ++ optionals (lib.versionAtLeast version "5.2") [ cpio pahole zlib ] + ++ optional (lib.versionAtLeast version "5.8") elfutils; patches = map (p: p.patch) kernelPatches @@ -179,7 +180,8 @@ stdenv.mkDerivation ({ configurePhase = '' runHook preConfigure - export buildRoot=$(mktemp -d) + export buildRoot=$TMPDIR/kernel-buildroot + mkdir -p $buildRoot echo "manual-config configurePhase buildRoot=$buildRoot pwd=$PWD" @@ -296,8 +298,8 @@ stdenv.mkDerivation ({ # Some image types need special install targets (e.g. uImage is installed with make uinstall) installTargets = [ (kernelConf.installTarget or ( - /**/ if kernelConf.target == "uImage" then "uinstall" - else if kernelConf.target == "zImage" || kernelConf.target == "Image.gz" then "zinstall" + /**/ if target == "uImage" then "uinstall" + else if target == "zImage" || target == "Image.gz" then "zinstall" else "install")) ]; diff --git a/pkgs/os-specific/linux/kernel/patches.nix b/pkgs/os-specific/linux/kernel/patches.nix index f2225096dd5ca..972235c7f8522 100644 --- a/pkgs/os-specific/linux/kernel/patches.nix +++ b/pkgs/os-specific/linux/kernel/patches.nix @@ -58,11 +58,6 @@ patch = ./export-rt-sched-migrate.patch; }; - fix-em-ice-bonding = { - name = "fix-em-ice-bonding"; - patch = ./fix-em-ice-bonding.patch; - }; - CVE-2023-32233 = rec { name = "CVE-2023-32233"; patch = fetchpatch { diff --git a/pkgs/os-specific/linux/kernel/xanmod-kernels.nix b/pkgs/os-specific/linux/kernel/xanmod-kernels.nix index 3d428ce072b0a..8eaab5a6f8b18 100644 --- a/pkgs/os-specific/linux/kernel/xanmod-kernels.nix +++ b/pkgs/os-specific/linux/kernel/xanmod-kernels.nix @@ -3,14 +3,14 @@ let # These names are how they are designated in https://xanmod.org. ltsVariant = { - version = "6.1.29"; - hash = "sha256-/AaI/cOORkegxjKcrZ941U2oazf3FzLlUv5Y2CXrpb0="; + version = "6.1.31"; + hash = "sha256-quYsp6h7IV6gUT0e55FeBlS8rH9OGrqdbM1XSIYNRV4="; variant = "lts"; }; mainVariant = { - version = "6.3.3"; - hash = "sha256-3vkY79dmRUITXUIStYVlrR/JVLtLH2hfH1YKCF03Wmo="; + version = "6.3.5"; + hash = "sha256-2+8WDj1VdmIdC0DjmKyY/fMi5zoiXDAWy7EAmkImvXk="; variant = "main"; }; diff --git a/pkgs/os-specific/linux/lenovo-legion/app.nix b/pkgs/os-specific/linux/lenovo-legion/app.nix new file mode 100644 index 0000000000000..ba189767bca6d --- /dev/null +++ b/pkgs/os-specific/linux/lenovo-legion/app.nix @@ -0,0 +1,48 @@ +{ lib, fetchFromGitHub, xorg, libsForQt5, wrapQtAppsHook, python3 }: + +python3.pkgs.buildPythonApplication rec { + pname = "lenovo-legion-app"; + version = "2023-04-02-16-53-51"; + + src = fetchFromGitHub { + owner = "johnfanv2"; + repo = "LenovoLegionLinux"; + rev = "main${version}"; + sha256 = "sha256-s4JFFmawokdC4qoqNvZDhuJSinhQ3YKSIfAYi79VTTA="; + }; + + sourceRoot = "source/python/legion_linux"; + + nativeBuildInputs = [ wrapQtAppsHook ]; + + propagatedBuildInputs = with python3.pkgs; [ + pyqt5 + argcomplete + pyyaml + xorg.libxcb + libsForQt5.qtbase + ]; + + postInstall = '' + cp -r ./{legion.py,legion_cli.py,legion_gui.py} $out/${python3.sitePackages} + cp ./legion_logo.png $out/${python3.sitePackages}/legion_logo.png + + rm -rf $out/data + ''; + + dontWrapQtApps = true; + + preFixup = '' + makeWrapperArgs+=("''${qtWrapperArgs[@]}") + ''; + + meta = { + description = "An utility to control Lenovo Legion laptop"; + homepage = "https://github.com/johnfanv2/LenovoLegionLinux"; + license = lib.licenses.gpl2Only; + platforms = lib.platforms.linux; + maintainers = [ lib.maintainers.ulrikstrid ]; + mainProgram = "legion_gui"; + }; +} + diff --git a/pkgs/os-specific/linux/lenovo-legion/default.nix b/pkgs/os-specific/linux/lenovo-legion/default.nix new file mode 100644 index 0000000000000..375b835ac47db --- /dev/null +++ b/pkgs/os-specific/linux/lenovo-legion/default.nix @@ -0,0 +1,34 @@ +{ lib, fetchurl, stdenv, kernel, bash, lenovo-legion }: + +stdenv.mkDerivation { + pname = "lenovo-legion-module"; + inherit (lenovo-legion) version src; + + sourceRoot = "source/kernel_module"; + + hardeningDisable = [ "pic" ]; + + preConfigure = '' + sed -i -e '/depmod/d' ./Makefile + ''; + + makeFlags = kernel.makeFlags ++ [ + "SHELL=bash" + "KERNELVERSION=${kernel.modDirVersion}" + "KSRC=${kernel.dev}/lib/modules/${kernel.modDirVersion}/build" + "INSTALLDIR=${placeholder "out"}/lib/modules/${kernel.modDirVersion}/kernel/drivers/platform/x86" + "MODDESTDIR=${placeholder "out"}/lib/modules/${kernel.modDirVersion}/kernel/drivers/platform/x86" + "DKMSDIR=${placeholder "out"}/lib/modules/${kernel.modDirVersion}/misc" + ]; + + nativeBuildInputs = kernel.moduleBuildDependencies; + + meta = { + description = "Linux kernel module for controlling fan and power in Lenovo Legion laptops"; + homepage = "https://github.com/johnfanv2/LenovoLegionLinux"; + license = lib.licenses.gpl2Only; + platforms = lib.platforms.linux; + maintainers = [ lib.maintainers.ulrikstrid ]; + broken = kernel.kernelOlder "5.15"; + }; +} diff --git a/pkgs/os-specific/linux/libcap-ng/default.nix b/pkgs/os-specific/linux/libcap-ng/default.nix index 1ba14c5f4714b..0f60a8655cedf 100644 --- a/pkgs/os-specific/linux/libcap-ng/default.nix +++ b/pkgs/os-specific/linux/libcap-ng/default.nix @@ -9,6 +9,8 @@ stdenv.mkDerivation rec { sha256 = "sha256-vtb2hI4iuy+Dtfdksq7w7TkwVOgDqOOocRyyo55rSS0="; }; + outputs = [ "out" "dev" "man" ]; + configureFlags = [ "--without-python" ]; diff --git a/pkgs/os-specific/linux/libcap/default.nix b/pkgs/os-specific/linux/libcap/default.nix index 553331ab59937..17fcbd1284087 100644 --- a/pkgs/os-specific/linux/libcap/default.nix +++ b/pkgs/os-specific/linux/libcap/default.nix @@ -7,11 +7,11 @@ assert usePam -> pam != null; stdenv.mkDerivation rec { pname = "libcap"; - version = "2.68"; + version = "2.69"; src = fetchurl { url = "mirror://kernel/linux/libs/security/linux-privs/libcap2/${pname}-${version}.tar.xz"; - sha256 = "sha256-kL47bUG+X4GuSwPsdgErDSfIKSk2hPbAW2XV+cznJLI="; + sha256 = "sha256-8xH489rYRpnQVm0db37JQ6kpiyj3FMrjyTHf1XSS1+s="; }; outputs = [ "out" "dev" "lib" "man" "doc" ] diff --git a/pkgs/os-specific/linux/nvidia-x11/builder.sh b/pkgs/os-specific/linux/nvidia-x11/builder.sh index 2ca74fb5f058d..a2ced98b89dce 100755 --- a/pkgs/os-specific/linux/nvidia-x11/builder.sh +++ b/pkgs/os-specific/linux/nvidia-x11/builder.sh @@ -124,6 +124,10 @@ installPhase() { if [ -e nvngx.dll ] && [ -e _nvngx.dll ]; then install -Dm644 -t $i/lib/nvidia/wine/ nvngx.dll _nvngx.dll fi + + if [ -e nvoptix.bin ]; then + install -Dm444 -t $i/share/nvidia/ nvoptix.bin + fi done if [ -n "$bin" ]; then diff --git a/pkgs/os-specific/linux/nvidia-x11/default.nix b/pkgs/os-specific/linux/nvidia-x11/default.nix index 5a54dd93de6cd..1b47c400395fe 100644 --- a/pkgs/os-specific/linux/nvidia-x11/default.nix +++ b/pkgs/os-specific/linux/nvidia-x11/default.nix @@ -54,12 +54,12 @@ rec { }); beta = selectHighestVersion latest (generic { - version = "530.30.02"; - sha256_64bit = "sha256-R/3bvXoiumYZI9vObn9R7sVN9oBQxAbMBJDDv77eeWM="; - sha256_aarch64 = "sha256-/b5Jdow+O7ExXjtXTzDX38qgmBDUYDUl+5zxXvbi1ts="; - openSha256 = "sha256-LCtTyuJ8s8isTBt9HetItLqSjL1GOn0tPUarjuxHpMk="; - settingsSha256 = "sha256-6mynLNSaWeiB52HdwZ0EQNyPg+tuat0oEqpZGSb2yQo="; - persistencedSha256 = "sha256-h6iq0iD9F41a7s6jWKPTI+oVzgDRIr1Kk97LNH9rg7E="; + version = "535.43.02"; + sha256_64bit = "sha256-4KTdk4kGDmBGyHntMIzWRivUpEpzmra+p7RBsTL8mYM="; + sha256_aarch64 = "sha256-0blD8R+xpOVlitWefIbtw1d3KAnmWHBy7hkxGZHBrE4="; + openSha256 = "sha256-W1fwbbEEM7Z/S3J0djxGTtVTewbSALqX1G1OSpdajCM="; + settingsSha256 = "sha256-j0sSEbtF2fapv4GSthVTkmJga+ycmrGc1OnGpV6jEkc="; + persistencedSha256 = "sha256-M0ovNaJo8SZwLW4CQz9accNK79Z5JtTJ9kKwOzicRZ4="; }); # Vulkan developer beta driver diff --git a/pkgs/os-specific/linux/nvidia-x11/generic.nix b/pkgs/os-specific/linux/nvidia-x11/generic.nix index 6455010d9887a..2571812b9645c 100644 --- a/pkgs/os-specific/linux/nvidia-x11/generic.nix +++ b/pkgs/os-specific/linux/nvidia-x11/generic.nix @@ -50,7 +50,7 @@ let libPathFor = pkgs: lib.makeLibraryPath (with pkgs; [ libdrm xorg.libXext xorg.libX11 xorg.libXv xorg.libXrandr xorg.libxcb zlib stdenv.cc.cc - wayland mesa libGL + wayland mesa libGL openssl ]); self = stdenv.mkDerivation { diff --git a/pkgs/os-specific/linux/switcheroo-control/default.nix b/pkgs/os-specific/linux/switcheroo-control/default.nix index 38945c7062210..bb0f262a2b1cf 100644 --- a/pkgs/os-specific/linux/switcheroo-control/default.nix +++ b/pkgs/os-specific/linux/switcheroo-control/default.nix @@ -12,7 +12,7 @@ python3.pkgs.buildPythonApplication rec { pname = "switcheroo-control"; - version = "2.3"; + version = "2.6"; format = "other"; @@ -21,7 +21,7 @@ python3.pkgs.buildPythonApplication rec { owner = "hadess"; repo = pname; rev = version; - hash = "sha256-1Pze2TJ9mggfcpiLFwJ7/9WhsdJx4G3GoA7+Z47shuc="; + hash = "sha256-F+5HhMxM8pcnAGmVBARKWNCL0rIEzHW/jsGHHqYZJug="; }; nativeBuildInputs = [ diff --git a/pkgs/os-specific/linux/systemd/0003-Fix-NixOS-containers.patch b/pkgs/os-specific/linux/systemd/0003-Fix-NixOS-containers.patch index c0d38c60202c2..08499a228344c 100644 --- a/pkgs/os-specific/linux/systemd/0003-Fix-NixOS-containers.patch +++ b/pkgs/os-specific/linux/systemd/0003-Fix-NixOS-containers.patch @@ -10,10 +10,10 @@ container, so checking early whether it exists will fail. 1 file changed, 2 insertions(+) diff --git a/src/nspawn/nspawn.c b/src/nspawn/nspawn.c -index a697ea5cb9..65d9e7e398 100644 +index 3dabe12672..e5aa4feb1e 100644 --- a/src/nspawn/nspawn.c +++ b/src/nspawn/nspawn.c -@@ -5635,6 +5635,7 @@ static int run(int argc, char *argv[]) { +@@ -5638,6 +5638,7 @@ static int run(int argc, char *argv[]) { goto finish; } } else { @@ -21,7 +21,7 @@ index a697ea5cb9..65d9e7e398 100644 _cleanup_free_ char *p = NULL; if (arg_pivot_root_new) -@@ -5649,6 +5650,7 @@ static int run(int argc, char *argv[]) { +@@ -5652,6 +5653,7 @@ static int run(int argc, char *argv[]) { "Directory %s doesn't look like it has an OS tree (/usr/ directory is missing). Refusing.", arg_directory); goto finish; } diff --git a/pkgs/os-specific/linux/systemd/0005-Add-some-NixOS-specific-unit-directories.patch b/pkgs/os-specific/linux/systemd/0004-Add-some-NixOS-specific-unit-directories.patch index b4a0da30c8f61..b4a0da30c8f61 100644 --- a/pkgs/os-specific/linux/systemd/0005-Add-some-NixOS-specific-unit-directories.patch +++ b/pkgs/os-specific/linux/systemd/0004-Add-some-NixOS-specific-unit-directories.patch diff --git a/pkgs/os-specific/linux/systemd/0004-fsck-look-for-fsck-binary-not-just-in-sbin.patch b/pkgs/os-specific/linux/systemd/0004-fsck-look-for-fsck-binary-not-just-in-sbin.patch deleted file mode 100644 index 617cef50cc3c6..0000000000000 --- a/pkgs/os-specific/linux/systemd/0004-fsck-look-for-fsck-binary-not-just-in-sbin.patch +++ /dev/null @@ -1,152 +0,0 @@ -From 0000000000000000000000000000000000000000 Mon Sep 17 00:00:00 2001 -From: Florian Klink <flokli@flokli.de> -Date: Thu, 13 Apr 2023 22:54:54 +0200 -Subject: [PATCH] fsck: look for fsck binary not just in /sbin - -This removes remaining hardcoded occurences of `/sbin/fsck`, and instead -uses `find_executable` to find `fsck`. - -We also use `fsck_exists_for_fstype` to check for the `fsck.*` -executable, which also checks in `$PATH`, so it's fair to assume fsck -itself is also available. ---- - man/systemd-fsck@.service.xml | 8 ++++---- - src/fsck/fsck.c | 9 ++++++++- - src/home/homework-luks.c | 11 ++++++++++- - src/shared/dissect-image.c | 13 +++++++++++-- - 4 files changed, 33 insertions(+), 8 deletions(-) - -diff --git a/man/systemd-fsck@.service.xml b/man/systemd-fsck@.service.xml -index e928aebdb3..403286829e 100644 ---- a/man/systemd-fsck@.service.xml -+++ b/man/systemd-fsck@.service.xml -@@ -51,17 +51,17 @@ - <para><filename>systemd-fsck</filename> does not know any details - about specific filesystems, and simply executes file system - checkers specific to each filesystem type -- (<filename>/sbin/fsck.<replaceable>type</replaceable></filename>). These checkers will decide if -+ (<filename>fsck.<replaceable>type</replaceable></filename>). These checkers will decide if - the filesystem should actually be checked based on the time since - last check, number of mounts, unclean unmount, etc.</para> - - <para><filename>systemd-fsck-root.service</filename> and <filename>systemd-fsck-usr.service</filename> -- will activate <filename>reboot.target</filename> if <filename>/sbin/fsck</filename> returns the "System -- should reboot" condition, or <filename>emergency.target</filename> if <filename>/sbin/fsck</filename> -+ will activate <filename>reboot.target</filename> if <filename>fsck</filename> returns the "System -+ should reboot" condition, or <filename>emergency.target</filename> if <filename>fsck</filename> - returns the "Filesystem errors left uncorrected" condition.</para> - - <para><filename>systemd-fsck@.service</filename> will fail if -- <filename>/sbin/fsck</filename> returns with either "System should reboot" -+ <filename>fsck</filename> returns with either "System should reboot" - or "Filesystem errors left uncorrected" conditions. For filesystems - listed in <filename>/etc/fstab</filename> without <literal>nofail</literal> - or <literal>noauto</literal> options, <literal>local-fs.target</literal> -diff --git a/src/fsck/fsck.c b/src/fsck/fsck.c -index e25c5d5efa..0e0e73c9ac 100644 ---- a/src/fsck/fsck.c -+++ b/src/fsck/fsck.c -@@ -351,6 +351,7 @@ static int run(int argc, char *argv[]) { - if (r == 0) { - char dash_c[STRLEN("-C") + DECIMAL_STR_MAX(int) + 1]; - int progress_socket = -1; -+ _cleanup_free_ char *fsck_path = NULL; - const char *cmdline[9]; - int i = 0; - -@@ -371,7 +372,13 @@ static int run(int argc, char *argv[]) { - } else - dash_c[0] = 0; - -- cmdline[i++] = "/sbin/fsck"; -+ r = find_executable("fsck", &fsck_path); -+ if (r < 0) { -+ log_error_errno(r, "Cannot find fsck binary: %m"); -+ _exit(FSCK_OPERATIONAL_ERROR); -+ } -+ -+ cmdline[i++] = fsck_path; - cmdline[i++] = arg_repair; - cmdline[i++] = "-T"; - -diff --git a/src/home/homework-luks.c b/src/home/homework-luks.c -index 2ea9887853..e267457b8e 100644 ---- a/src/home/homework-luks.c -+++ b/src/home/homework-luks.c -@@ -215,6 +215,7 @@ static int block_get_size_by_path(const char *path, uint64_t *ret) { - static int run_fsck(const char *node, const char *fstype) { - int r, exit_status; - pid_t fsck_pid; -+ _cleanup_free_ char *fsck_path = NULL; - - assert(node); - assert(fstype); -@@ -227,6 +228,14 @@ static int run_fsck(const char *node, const char *fstype) { - return 0; - } - -+ r = find_executable("fsck", &fsck_path); -+ /* We proceed anyway if we can't determine whether the fsck -+ * binary for some specific fstype exists, -+ * but the lack of the main fsck binary should be considered -+ * an error. */ -+ if (r < 0) -+ return log_error_errno(r, "Cannot find fsck binary: %m"); -+ - r = safe_fork("(fsck)", - FORK_RESET_SIGNALS|FORK_RLIMIT_NOFILE_SAFE|FORK_DEATHSIG|FORK_LOG|FORK_STDOUT_TO_STDERR|FORK_CLOSE_ALL_FDS, - &fsck_pid); -@@ -234,7 +243,7 @@ static int run_fsck(const char *node, const char *fstype) { - return r; - if (r == 0) { - /* Child */ -- execl("/sbin/fsck", "/sbin/fsck", "-aTl", node, NULL); -+ execl(fsck_path, fsck_path, "-aTl", node, NULL); - log_open(); - log_error_errno(errno, "Failed to execute fsck: %m"); - _exit(FSCK_OPERATIONAL_ERROR); -diff --git a/src/shared/dissect-image.c b/src/shared/dissect-image.c -index 4749bdd230..2b6e1418dd 100644 ---- a/src/shared/dissect-image.c -+++ b/src/shared/dissect-image.c -@@ -1423,6 +1423,7 @@ static int is_loop_device(const char *path) { - static int run_fsck(int node_fd, const char *fstype) { - int r, exit_status; - pid_t pid; -+ _cleanup_free_ char *fsck_path = NULL; - - assert(node_fd >= 0); - assert(fstype); -@@ -1437,6 +1438,14 @@ static int run_fsck(int node_fd, const char *fstype) { - return 0; - } - -+ r = find_executable("fsck", &fsck_path); -+ /* We proceed anyway if we can't determine whether the fsck -+ * binary for some specific fstype exists, -+ * but the lack of the main fsck binary should be considered -+ * an error. */ -+ if (r < 0) -+ return log_error_errno(r, "Cannot find fsck binary: %m"); -+ - r = safe_fork_full( - "(fsck)", - &node_fd, 1, /* Leave the node fd open */ -@@ -1446,7 +1455,7 @@ static int run_fsck(int node_fd, const char *fstype) { - return log_debug_errno(r, "Failed to fork off fsck: %m"); - if (r == 0) { - /* Child */ -- execl("/sbin/fsck", "/sbin/fsck", "-aT", FORMAT_PROC_FD_PATH(node_fd), NULL); -+ execl(fsck_path, fsck_path, "-aT", FORMAT_PROC_FD_PATH(node_fd), NULL); - log_open(); - log_debug_errno(errno, "Failed to execl() fsck: %m"); - _exit(FSCK_OPERATIONAL_ERROR); -@@ -1454,7 +1463,7 @@ static int run_fsck(int node_fd, const char *fstype) { - - exit_status = wait_for_terminate_and_check("fsck", pid, 0); - if (exit_status < 0) -- return log_debug_errno(exit_status, "Failed to fork off /sbin/fsck: %m"); -+ return log_debug_errno(exit_status, "Failed to fork off %s: %m", fsck_path); - - if ((exit_status & ~FSCK_ERROR_CORRECTED) != FSCK_SUCCESS) { - log_debug("fsck failed with exit status %i.", exit_status); diff --git a/pkgs/os-specific/linux/systemd/0006-Get-rid-of-a-useless-message-in-user-sessions.patch b/pkgs/os-specific/linux/systemd/0005-Get-rid-of-a-useless-message-in-user-sessions.patch index 0a638dfbf0ea3..e9f73d7c7726b 100644 --- a/pkgs/os-specific/linux/systemd/0006-Get-rid-of-a-useless-message-in-user-sessions.patch +++ b/pkgs/os-specific/linux/systemd/0005-Get-rid-of-a-useless-message-in-user-sessions.patch @@ -13,10 +13,10 @@ in containers. 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/core/manager.c b/src/core/manager.c -index 380a4e30d7..817acb87b8 100644 +index 4bc8a06bd2..342892490e 100644 --- a/src/core/manager.c +++ b/src/core/manager.c -@@ -1437,7 +1437,8 @@ static unsigned manager_dispatch_stop_when_bound_queue(Manager *m) { +@@ -1486,7 +1486,8 @@ static unsigned manager_dispatch_stop_when_bound_queue(Manager *m) { if (!unit_is_bound_by_inactive(u, &culprit)) continue; diff --git a/pkgs/os-specific/linux/systemd/0007-hostnamed-localed-timedated-disable-methods-that-cha.patch b/pkgs/os-specific/linux/systemd/0006-hostnamed-localed-timedated-disable-methods-that-cha.patch index 2c4c3f6564e1b..2c4c3f6564e1b 100644 --- a/pkgs/os-specific/linux/systemd/0007-hostnamed-localed-timedated-disable-methods-that-cha.patch +++ b/pkgs/os-specific/linux/systemd/0006-hostnamed-localed-timedated-disable-methods-that-cha.patch diff --git a/pkgs/os-specific/linux/systemd/0008-Fix-hwdb-paths.patch b/pkgs/os-specific/linux/systemd/0007-Fix-hwdb-paths.patch index 7777ba7e42593..7777ba7e42593 100644 --- a/pkgs/os-specific/linux/systemd/0008-Fix-hwdb-paths.patch +++ b/pkgs/os-specific/linux/systemd/0007-Fix-hwdb-paths.patch diff --git a/pkgs/os-specific/linux/systemd/0009-Change-usr-share-zoneinfo-to-etc-zoneinfo.patch b/pkgs/os-specific/linux/systemd/0008-Change-usr-share-zoneinfo-to-etc-zoneinfo.patch index 52733a4c49209..300906be04d97 100644 --- a/pkgs/os-specific/linux/systemd/0009-Change-usr-share-zoneinfo-to-etc-zoneinfo.patch +++ b/pkgs/os-specific/linux/systemd/0008-Change-usr-share-zoneinfo-to-etc-zoneinfo.patch @@ -88,10 +88,10 @@ index 9e79f84691..1a1c75718c 100644 (void) mkdir_parents(etc_localtime, 0755); r = symlink_atomic(e, etc_localtime); diff --git a/src/nspawn/nspawn.c b/src/nspawn/nspawn.c -index 65d9e7e398..dd44d529ca 100644 +index e5aa4feb1e..a7a8fae860 100644 --- a/src/nspawn/nspawn.c +++ b/src/nspawn/nspawn.c -@@ -1915,8 +1915,8 @@ int userns_mkdir(const char *root, const char *path, mode_t mode, uid_t uid, gid +@@ -1918,8 +1918,8 @@ int userns_mkdir(const char *root, const char *path, mode_t mode, uid_t uid, gid static const char *timezone_from_path(const char *path) { return PATH_STARTSWITH_SET( path, diff --git a/pkgs/os-specific/linux/systemd/0010-localectl-use-etc-X11-xkb-for-list-x11.patch b/pkgs/os-specific/linux/systemd/0009-localectl-use-etc-X11-xkb-for-list-x11.patch index fac9916cf3b4d..fac9916cf3b4d 100644 --- a/pkgs/os-specific/linux/systemd/0010-localectl-use-etc-X11-xkb-for-list-x11.patch +++ b/pkgs/os-specific/linux/systemd/0009-localectl-use-etc-X11-xkb-for-list-x11.patch diff --git a/pkgs/os-specific/linux/systemd/0011-build-don-t-create-statedir-and-don-t-touch-prefixdi.patch b/pkgs/os-specific/linux/systemd/0010-build-don-t-create-statedir-and-don-t-touch-prefixdi.patch index eec57111b9132..eec57111b9132 100644 --- a/pkgs/os-specific/linux/systemd/0011-build-don-t-create-statedir-and-don-t-touch-prefixdi.patch +++ b/pkgs/os-specific/linux/systemd/0010-build-don-t-create-statedir-and-don-t-touch-prefixdi.patch diff --git a/pkgs/os-specific/linux/systemd/0012-add-rootprefix-to-lookup-dir-paths.patch b/pkgs/os-specific/linux/systemd/0011-add-rootprefix-to-lookup-dir-paths.patch index 6e07928d5fbd8..6e07928d5fbd8 100644 --- a/pkgs/os-specific/linux/systemd/0012-add-rootprefix-to-lookup-dir-paths.patch +++ b/pkgs/os-specific/linux/systemd/0011-add-rootprefix-to-lookup-dir-paths.patch diff --git a/pkgs/os-specific/linux/systemd/0013-systemd-shutdown-execute-scripts-in-etc-systemd-syst.patch b/pkgs/os-specific/linux/systemd/0012-systemd-shutdown-execute-scripts-in-etc-systemd-syst.patch index 84ac0d882d6d0..9d0565a6e7672 100644 --- a/pkgs/os-specific/linux/systemd/0013-systemd-shutdown-execute-scripts-in-etc-systemd-syst.patch +++ b/pkgs/os-specific/linux/systemd/0012-systemd-shutdown-execute-scripts-in-etc-systemd-syst.patch @@ -10,10 +10,10 @@ This is needed for NixOS to use such scripts as systemd directory is immutable. 1 file changed, 1 insertion(+) diff --git a/src/shutdown/shutdown.c b/src/shutdown/shutdown.c -index 42111d2772..53467ac229 100644 +index 5dee1b3a92..c08cf80548 100644 --- a/src/shutdown/shutdown.c +++ b/src/shutdown/shutdown.c -@@ -335,6 +335,7 @@ static void init_watchdog(void) { +@@ -339,6 +339,7 @@ static void init_watchdog(void) { int main(int argc, char *argv[]) { static const char* const dirs[] = { SYSTEM_SHUTDOWN_PATH, diff --git a/pkgs/os-specific/linux/systemd/0014-systemd-sleep-execute-scripts-in-etc-systemd-system-.patch b/pkgs/os-specific/linux/systemd/0013-systemd-sleep-execute-scripts-in-etc-systemd-system-.patch index 5fa3fb14f1ff9..5fa3fb14f1ff9 100644 --- a/pkgs/os-specific/linux/systemd/0014-systemd-sleep-execute-scripts-in-etc-systemd-system-.patch +++ b/pkgs/os-specific/linux/systemd/0013-systemd-sleep-execute-scripts-in-etc-systemd-system-.patch diff --git a/pkgs/os-specific/linux/systemd/0015-path-util.h-add-placeholder-for-DEFAULT_PATH_NORMAL.patch b/pkgs/os-specific/linux/systemd/0014-path-util.h-add-placeholder-for-DEFAULT_PATH_NORMAL.patch index b3d1db340ef8c..b3d1db340ef8c 100644 --- a/pkgs/os-specific/linux/systemd/0015-path-util.h-add-placeholder-for-DEFAULT_PATH_NORMAL.patch +++ b/pkgs/os-specific/linux/systemd/0014-path-util.h-add-placeholder-for-DEFAULT_PATH_NORMAL.patch diff --git a/pkgs/os-specific/linux/systemd/0016-pkg-config-derive-prefix-from-prefix.patch b/pkgs/os-specific/linux/systemd/0015-pkg-config-derive-prefix-from-prefix.patch index 3fbfd7f10ab49..3fbfd7f10ab49 100644 --- a/pkgs/os-specific/linux/systemd/0016-pkg-config-derive-prefix-from-prefix.patch +++ b/pkgs/os-specific/linux/systemd/0015-pkg-config-derive-prefix-from-prefix.patch diff --git a/pkgs/os-specific/linux/systemd/0017-inherit-systemd-environment-when-calling-generators.patch b/pkgs/os-specific/linux/systemd/0016-inherit-systemd-environment-when-calling-generators.patch index 236af4b2c97ba..0f67abe795c31 100644 --- a/pkgs/os-specific/linux/systemd/0017-inherit-systemd-environment-when-calling-generators.patch +++ b/pkgs/os-specific/linux/systemd/0016-inherit-systemd-environment-when-calling-generators.patch @@ -16,10 +16,10 @@ executables that are being called from managers. 1 file changed, 8 insertions(+) diff --git a/src/core/manager.c b/src/core/manager.c -index 817acb87b8..3f31359f8a 100644 +index 342892490e..1117251fe0 100644 --- a/src/core/manager.c +++ b/src/core/manager.c -@@ -3714,9 +3714,17 @@ static int build_generator_environment(Manager *m, char ***ret) { +@@ -3771,9 +3771,17 @@ static int build_generator_environment(Manager *m, char ***ret) { * adjust generated units to that. Let's pass down some bits of information that are easy for us to * determine (but a bit harder for generator scripts to determine), as environment variables. */ diff --git a/pkgs/os-specific/linux/systemd/0018-core-don-t-taint-on-unmerged-usr.patch b/pkgs/os-specific/linux/systemd/0017-core-don-t-taint-on-unmerged-usr.patch index 18982ecd04bd1..f509eb39ece53 100644 --- a/pkgs/os-specific/linux/systemd/0018-core-don-t-taint-on-unmerged-usr.patch +++ b/pkgs/os-specific/linux/systemd/0017-core-don-t-taint-on-unmerged-usr.patch @@ -17,10 +17,10 @@ See also: https://github.com/systemd/systemd/issues/24191 1 file changed, 4 deletions(-) diff --git a/src/core/manager.c b/src/core/manager.c -index 3f31359f8a..0c4ec0b4fb 100644 +index 1117251fe0..bf5600a6cf 100644 --- a/src/core/manager.c +++ b/src/core/manager.c -@@ -4556,10 +4556,6 @@ char* manager_taint_string(const Manager *m) { +@@ -4617,10 +4617,6 @@ char* manager_taint_string(const Manager *m) { if (m->taint_usr) stage[n++] = "split-usr"; diff --git a/pkgs/os-specific/linux/systemd/0019-tpm2_context_init-fix-driver-name-checking.patch b/pkgs/os-specific/linux/systemd/0018-tpm2_context_init-fix-driver-name-checking.patch index 8d6eab5ed847d..8d6eab5ed847d 100644 --- a/pkgs/os-specific/linux/systemd/0019-tpm2_context_init-fix-driver-name-checking.patch +++ b/pkgs/os-specific/linux/systemd/0018-tpm2_context_init-fix-driver-name-checking.patch diff --git a/pkgs/os-specific/linux/systemd/0019-bootctl-also-print-efi-files-not-owned-by-systemd-in.patch b/pkgs/os-specific/linux/systemd/0019-bootctl-also-print-efi-files-not-owned-by-systemd-in.patch new file mode 100644 index 0000000000000..84fc6528b9847 --- /dev/null +++ b/pkgs/os-specific/linux/systemd/0019-bootctl-also-print-efi-files-not-owned-by-systemd-in.patch @@ -0,0 +1,46 @@ +From bc0f378a1149b59e88e9345e579d62fec7f50cdf Mon Sep 17 00:00:00 2001 +From: Arian van Putten <arian.vanputten@gmail.com> +Date: Wed, 31 May 2023 13:27:13 +0200 +Subject: [PATCH] bootctl: also print efi files not owned by systemd in status + +We should not skip over unknown entries in EFI/BOOT/ but +also print them out in status so people are aware that they are there. + +(cherry picked from commit a680d4fb87bad829989949e5ea4fc6db90453456) +--- + src/boot/bootctl-status.c | 11 +++++------ + 1 file changed, 5 insertions(+), 6 deletions(-) + +diff --git a/src/boot/bootctl-status.c b/src/boot/bootctl-status.c +index 2e2bf1f7e1..f1ac4a9c8a 100644 +--- a/src/boot/bootctl-status.c ++++ b/src/boot/bootctl-status.c +@@ -225,9 +225,8 @@ static int enumerate_binaries( + return log_error_errno(errno, "Failed to open file '%s' for reading: %m", filename); + + r = get_file_version(fd, &v); +- if (r == -ESRCH) /* Not the file we are looking for. */ +- continue; +- if (r < 0) ++ ++ if (r < 0 && r != -ESRCH) + return r; + + if (*previous) { /* Let's output the previous entry now, since now we know that there will be +@@ -242,10 +241,10 @@ static int enumerate_binaries( + /* Do not output this entry immediately, but store what should be printed in a state + * variable, because we only will know the tree glyph to print (branch or final edge) once we + * read one more entry */ +- if (r > 0) +- r = asprintf(previous, "/%s/%s (%s%s%s)", path, de->d_name, ansi_highlight(), v, ansi_normal()); +- else ++ if (r == -ESRCH) /* No systemd-owned file but still interesting to print */ + r = asprintf(previous, "/%s/%s", path, de->d_name); ++ else /* if (r >= 0) */ ++ r = asprintf(previous, "/%s/%s (%s%s%s)", path, de->d_name, ansi_highlight(), v, ansi_normal()); + if (r < 0) + return log_oom(); + +-- +2.39.2 (Apple Git-143) + diff --git a/pkgs/os-specific/linux/systemd/default.nix b/pkgs/os-specific/linux/systemd/default.nix index fbf56b8c30af5..fd5ca2df5a94a 100644 --- a/pkgs/os-specific/linux/systemd/default.nix +++ b/pkgs/os-specific/linux/systemd/default.nix @@ -145,7 +145,7 @@ assert withUkify -> withEfi; let wantCurl = withRemote || withImportd; wantGcrypt = withResolved || withImportd; - version = "253.3"; + version = "253.5"; # Bump this variable on every (major) version change. See below (in the meson options list) for why. # command: @@ -162,7 +162,7 @@ stdenv.mkDerivation (finalAttrs: { owner = "systemd"; repo = "systemd-stable"; rev = "v${version}"; - hash = "sha256-iy1kyqiVeXIhFJAQ+nYorrXm/xb2gfakyrEfMyNR5l8="; + hash = "sha256-B3A9AvpfZ8SYsiZvHnWO4RHs1/6EdczWF2NmrSqxQ7c="; }; # On major changes, or when otherwise required, you *must* reformat the patches, @@ -174,22 +174,22 @@ stdenv.mkDerivation (finalAttrs: { ./0001-Start-device-units-for-uninitialised-encrypted-devic.patch ./0002-Don-t-try-to-unmount-nix-or-nix-store.patch ./0003-Fix-NixOS-containers.patch - ./0004-fsck-look-for-fsck-binary-not-just-in-sbin.patch - ./0005-Add-some-NixOS-specific-unit-directories.patch - ./0006-Get-rid-of-a-useless-message-in-user-sessions.patch - ./0007-hostnamed-localed-timedated-disable-methods-that-cha.patch - ./0008-Fix-hwdb-paths.patch - ./0009-Change-usr-share-zoneinfo-to-etc-zoneinfo.patch - ./0010-localectl-use-etc-X11-xkb-for-list-x11.patch - ./0011-build-don-t-create-statedir-and-don-t-touch-prefixdi.patch - ./0012-add-rootprefix-to-lookup-dir-paths.patch - ./0013-systemd-shutdown-execute-scripts-in-etc-systemd-syst.patch - ./0014-systemd-sleep-execute-scripts-in-etc-systemd-system-.patch - ./0015-path-util.h-add-placeholder-for-DEFAULT_PATH_NORMAL.patch - ./0016-pkg-config-derive-prefix-from-prefix.patch - ./0017-inherit-systemd-environment-when-calling-generators.patch - ./0018-core-don-t-taint-on-unmerged-usr.patch - ./0019-tpm2_context_init-fix-driver-name-checking.patch + ./0004-Add-some-NixOS-specific-unit-directories.patch + ./0005-Get-rid-of-a-useless-message-in-user-sessions.patch + ./0006-hostnamed-localed-timedated-disable-methods-that-cha.patch + ./0007-Fix-hwdb-paths.patch + ./0008-Change-usr-share-zoneinfo-to-etc-zoneinfo.patch + ./0009-localectl-use-etc-X11-xkb-for-list-x11.patch + ./0010-build-don-t-create-statedir-and-don-t-touch-prefixdi.patch + ./0011-add-rootprefix-to-lookup-dir-paths.patch + ./0012-systemd-shutdown-execute-scripts-in-etc-systemd-syst.patch + ./0013-systemd-sleep-execute-scripts-in-etc-systemd-system-.patch + ./0014-path-util.h-add-placeholder-for-DEFAULT_PATH_NORMAL.patch + ./0015-pkg-config-derive-prefix-from-prefix.patch + ./0016-inherit-systemd-environment-when-calling-generators.patch + ./0017-core-don-t-taint-on-unmerged-usr.patch + ./0018-tpm2_context_init-fix-driver-name-checking.patch + ./0019-bootctl-also-print-efi-files-not-owned-by-systemd-in.patch ] ++ lib.optional stdenv.hostPlatform.isMusl ( let oe-core = fetchzip { diff --git a/pkgs/os-specific/linux/targetcli/default.nix b/pkgs/os-specific/linux/targetcli/default.nix index f08ac284f23c3..381a150066276 100644 --- a/pkgs/os-specific/linux/targetcli/default.nix +++ b/pkgs/os-specific/linux/targetcli/default.nix @@ -2,13 +2,13 @@ python3.pkgs.buildPythonApplication rec { pname = "targetcli"; - version = "2.1.54"; + version = "2.1.56"; src = fetchFromGitHub { owner = "open-iscsi"; repo = "${pname}-fb"; rev = "v${version}"; - sha256 = "1kbbvx0lba96ynr5iwws9jpi319m4rzph4bmcj7yfb37k8mi161v"; + hash = "sha256-sWLwjfuy9WPnrGK0BxUGnNrhtGDoQyRFMY1OSlyxqs4="; }; propagatedBuildInputs = with python3.pkgs; [ configshell rtslib ]; diff --git a/pkgs/os-specific/linux/usbrelay/daemon.nix b/pkgs/os-specific/linux/usbrelay/daemon.nix index 7aa1c3f153bb4..6e4e4661fd53a 100644 --- a/pkgs/os-specific/linux/usbrelay/daemon.nix +++ b/pkgs/os-specific/linux/usbrelay/daemon.nix @@ -5,7 +5,7 @@ in # This is a separate derivation, not just an additional output of # usbrelay, because otherwise, we have a cyclic dependency between # usbrelay (default.nix) and the python module (python.nix). -stdenv.mkDerivation rec { +stdenv.mkDerivation { pname = "usbrelayd"; inherit (usbrelay) src version; diff --git a/pkgs/os-specific/linux/usbrelay/default.nix b/pkgs/os-specific/linux/usbrelay/default.nix index c5b4f2b8a53fe..385f4da1142db 100644 --- a/pkgs/os-specific/linux/usbrelay/default.nix +++ b/pkgs/os-specific/linux/usbrelay/default.nix @@ -1,13 +1,13 @@ { stdenv, lib, fetchFromGitHub, hidapi, installShellFiles }: -stdenv.mkDerivation rec { +stdenv.mkDerivation (finalAttrs: { pname = "usbrelay"; - version = "1.0.1"; + version = "1.2"; src = fetchFromGitHub { owner = "darrylb123"; repo = "usbrelay"; - rev = version; - sha256 = "sha256-2elDrO+WaaRYdTrG40Ez00qSsNVQjXE6GdOJbWPfugE="; + rev = finalAttrs.version; + sha256 = "sha256-oJyHzbXOBKxLmPFZMS2jLF80frkiKjPJ89UwkenjIzs="; }; nativeBuildInputs = [ @@ -19,8 +19,9 @@ stdenv.mkDerivation rec { ]; makeFlags = [ - "DIR_VERSION=${version}" + "DIR_VERSION=${finalAttrs.version}" "PREFIX=${placeholder "out"}" + "LDCONFIG=${stdenv.cc.libc.bin}/bin/ldconfig" ]; postInstall = '' @@ -34,4 +35,4 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ wentasah ]; platforms = platforms.linux; }; -} +}) diff --git a/pkgs/os-specific/linux/usbrelay/python.nix b/pkgs/os-specific/linux/usbrelay/python.nix index b877989409097..90838295ecb59 100644 --- a/pkgs/os-specific/linux/usbrelay/python.nix +++ b/pkgs/os-specific/linux/usbrelay/python.nix @@ -1,6 +1,6 @@ { buildPythonPackage, usbrelay }: -buildPythonPackage rec { +buildPythonPackage { pname = "usbrelay_py"; inherit (usbrelay) version src; diff --git a/pkgs/os-specific/linux/util-linux/default.nix b/pkgs/os-specific/linux/util-linux/default.nix index 3c8b7f6663f18..7b98c6bcd9d2a 100644 --- a/pkgs/os-specific/linux/util-linux/default.nix +++ b/pkgs/os-specific/linux/util-linux/default.nix @@ -1,5 +1,5 @@ -{ lib, stdenv, fetchurl, pkg-config, zlib, shadow -, capabilitiesSupport ? true +{ lib, stdenv, fetchurl, fetchpatch, pkg-config, zlib, shadow +, capabilitiesSupport ? stdenv.isLinux , libcap_ng , libxcrypt , ncursesSupport ? true @@ -12,19 +12,32 @@ , translateManpages ? true , po4a , installShellFiles +, writeSupport ? stdenv.isLinux +, shadowSupport ? stdenv.isLinux +, memstreamHook }: stdenv.mkDerivation rec { pname = "util-linux" + lib.optionalString (!nlsSupport && !ncursesSupport && !systemdSupport) "-minimal"; - version = "2.38.1"; + version = "2.39"; src = fetchurl { url = "mirror://kernel/linux/utils/util-linux/v${lib.versions.majorMinor version}/util-linux-${version}.tar.xz"; - hash = "sha256-YEkqGbRObPmj3f9oMlszO4tStsWc4+vWoOyqTFEX6E8="; + hash = "sha256-MrMKM2zakDGC7WH+s+m5CLdipeZv4U5D77iNNxYgdcs="; }; patches = [ ./rtcwake-search-PATH-for-shutdown.patch + + # FIXME: backport mount fixes for older kernels, remove in next release + (fetchpatch { + url = "https://github.com/util-linux/util-linux/commit/f94a7760ed7ce81389a6059f020238981627a70d.diff"; + hash = "sha256-UorqDeECK8pBePkmpo2x90p/jP3rCMshyPCyijSX1wo="; + }) + (fetchpatch { + url = "https://github.com/util-linux/util-linux/commit/1bd85b64632280d6bf0e86b4ff29da8b19321c5f.diff"; + hash = "sha256-dgu4de5ul/si7Vzwe8lr9NvsdI1CWfDQKuqvARaY6sE="; + }) ]; outputs = [ "bin" "dev" "out" "lib" "man" ]; @@ -33,10 +46,11 @@ stdenv.mkDerivation rec { postPatch = '' patchShebangs tests/run.sh - substituteInPlace include/pathnames.h \ - --replace "/bin/login" "${shadow}/bin/login" substituteInPlace sys-utils/eject.c \ --replace "/bin/umount" "$bin/bin/umount" + '' + lib.optionalString shadowSupport '' + substituteInPlace include/pathnames.h \ + --replace "/bin/login" "${shadow}/bin/login" ''; # !!! It would be better to obtain the path to the mount helpers @@ -45,11 +59,11 @@ stdenv.mkDerivation rec { # root... configureFlags = [ "--localstatedir=/var" - "--enable-write" "--disable-use-tty-group" "--enable-fs-paths-default=/run/wrappers/bin:/run/current-system/sw/bin:/sbin" "--disable-makeinstall-setuid" "--disable-makeinstall-chown" "--disable-su" # provided by shadow + (lib.enableFeature writeSupport "write") (lib.enableFeature nlsSupport "nls") (lib.withFeature ncursesSupport "ncursesw") (lib.withFeature systemdSupport "systemd") @@ -74,7 +88,8 @@ stdenv.mkDerivation rec { ++ lib.optionals pamSupport [ pam ] ++ lib.optionals capabilitiesSupport [ libcap_ng ] ++ lib.optionals ncursesSupport [ ncurses ] - ++ lib.optionals systemdSupport [ systemd ]; + ++ lib.optionals systemdSupport [ systemd ] + ++ lib.optionals (stdenv.system == "x86_64-darwin") [ memstreamHook ]; doCheck = false; # "For development purpose only. Don't execute on production system!" @@ -90,7 +105,7 @@ stdenv.mkDerivation rec { changelog = "https://mirrors.edge.kernel.org/pub/linux/utils/util-linux/v${lib.versions.majorMinor version}/v${version}-ReleaseNotes"; # https://git.kernel.org/pub/scm/utils/util-linux/util-linux.git/tree/README.licensing license = with licenses; [ gpl2Only gpl2Plus gpl3Plus lgpl21Plus bsd3 bsdOriginalUC publicDomain ]; - platforms = platforms.linux; + platforms = platforms.unix; priority = 6; # lower priority than coreutils ("kill") and shadow ("login" etc.) packages }; } diff --git a/pkgs/os-specific/linux/v4l-utils/default.nix b/pkgs/os-specific/linux/v4l-utils/default.nix index f8d0c9be0d90d..87fd282f6960f 100644 --- a/pkgs/os-specific/linux/v4l-utils/default.nix +++ b/pkgs/os-specific/linux/v4l-utils/default.nix @@ -12,11 +12,11 @@ let # we need to use stdenv.mkDerivation in order not to pollute the libv4l’s closure with Qt in stdenv.mkDerivation rec { pname = "v4l-utils"; - version = "1.22.1"; + version = "1.24.1"; src = fetchurl { url = "https://linuxtv.org/downloads/${pname}/${pname}-${version}.tar.bz2"; - hash = "sha256-Zcb76DCkTKEFxEOwJxgsGyyQU6kdHnKthJ36s4i5TjE="; + hash = "sha256-y7f+imMH9c5TOgXN7XC7k8O6BjlaubbQB+tTt12AX1s="; }; outputs = [ "out" ] ++ lib.optional withUtils "lib" ++ [ "dev" ]; diff --git a/pkgs/servers/akkoma/akkoma-fe/default.nix b/pkgs/servers/akkoma/akkoma-fe/default.nix index b4a91a36b5d52..7591eace667bd 100644 --- a/pkgs/servers/akkoma/akkoma-fe/default.nix +++ b/pkgs/servers/akkoma/akkoma-fe/default.nix @@ -7,14 +7,14 @@ stdenv.mkDerivation rec { pname = "akkoma-fe"; - version = "unstable-2023-04-14"; + version = "unstable-2023-05-23"; src = fetchFromGitea { domain = "akkoma.dev"; owner = "AkkomaGang"; repo = "akkoma-fe"; - rev = "9aa64d82c964265133be97b08b0cdf0e75680419"; - hash = "sha256-WwjpYD8U+JvygPMo8VcQDdsjek3iKbpT18rXSVMPDG8="; + rev = "e530c2b4626fab3bc94736cb7d0774809717911f"; + hash = "sha256-dowo4YzlkfuQv1G4NclPrKyBwtOq7bEXruQY/BVjNyM="; }; offlineCache = fetchYarnDeps { diff --git a/pkgs/servers/akkoma/default.nix b/pkgs/servers/akkoma/default.nix index f6fe550bca58a..872dea5d5b5dd 100644 --- a/pkgs/servers/akkoma/default.nix +++ b/pkgs/servers/akkoma/default.nix @@ -9,14 +9,14 @@ beamPackages.mixRelease rec { pname = "pleroma"; - version = "3.8.0"; + version = "3.9.3"; src = fetchFromGitea { domain = "akkoma.dev"; owner = "AkkomaGang"; repo = "akkoma"; rev = "v${version}"; - hash = "sha256-KpaJ2xx3XEibMv1G8o9Lw7+LcnxPCUiWlmdcoi5wklQ="; + hash = "sha256-vXE7jv1GPAMKpWEAE9IUgWo7A+zkGYUzu0jlZ9oSbjA="; }; postPatch = '' diff --git a/pkgs/servers/akkoma/mix.nix b/pkgs/servers/akkoma/mix.nix index 0e88bf4a1a883..c350a1f3f5740 100644 --- a/pkgs/servers/akkoma/mix.nix +++ b/pkgs/servers/akkoma/mix.nix @@ -205,12 +205,12 @@ let cowboy = buildErlangMk rec { name = "cowboy"; - version = "2.9.0"; + version = "2.10.0"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1phv0a1zbgk7imfgcm0dlacm7hbjcdygb0pqmx4s26jf9f9rywic"; + sha256 = "0sqxqjdykxc2ai9cvkc0xjwkvr80z98wzlqlrd1z3iiw32vwrz9s"; }; beamDeps = [ cowlib ranch ]; @@ -231,12 +231,12 @@ let cowlib = buildRebar3 rec { name = "cowlib"; - version = "2.11.0"; + version = "2.12.1"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1ac6pj3x4vdbsa8hvmbzpdfc4k0v1p102jbd39snai8wnah9sgib"; + sha256 = "1c4dgi8canscyjgddp22mjc69znvwy44wk3r7jrl2wvs6vv76fqn"; }; beamDeps = []; @@ -257,25 +257,25 @@ let db_connection = buildMix rec { name = "db_connection"; - version = "2.4.3"; + version = "2.5.0"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "04iwywfqf8k125yfvm084l1mp0bcv82mwih7xlpb7kx61xdw29y1"; + sha256 = "18jsnmabdjwj3i7ml43ljzrzzvfy1a3bnbaqywgsv7nndji5nbf9"; }; - beamDeps = [ connection telemetry ]; + beamDeps = [ telemetry ]; }; decimal = buildMix rec { name = "decimal"; - version = "2.0.0"; + version = "2.1.1"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "0xzm8hfhn8q02rmg8cpgs68n5jz61wvqg7bxww9i1a6yanf6wril"; + sha256 = "1k7z418b6cj977wswpxsk5844xrxc1smaiqsmrqpf3pdjzsfbksk"; }; beamDeps = []; @@ -296,12 +296,12 @@ let dialyxir = buildMix rec { name = "dialyxir"; - version = "1.2.0"; + version = "1.3.0"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "0qw4zyd86fjwsav744jvz1wpdbmy9nz645xqr9s1d1bs88v221v1"; + sha256 = "0vv90jip2w362n3l7dkhqfdwlz97nwji535kn3fbk3dassya9ch0"; }; beamDeps = [ erlex ]; @@ -309,12 +309,12 @@ let earmark = buildMix rec { name = "earmark"; - version = "1.4.37"; + version = "1.4.38"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "01mibj51iys1l289mk2adqs50hfbpfj643mh459nvf4dhq95wvfq"; + sha256 = "0zzcslyv92gcp4zs3rd1vmw844s1q0fv127m7f7pszhnwh6y6f7r"; }; beamDeps = [ earmark_parser ]; @@ -322,12 +322,12 @@ let earmark_parser = buildMix rec { name = "earmark_parser"; - version = "1.4.31"; + version = "1.4.32"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "0nfhxyklbz0ixkl33xqkchqgdzk948dcjikym0vz0pikw1z3cz9i"; + sha256 = "0md7rhw1ix4fp31bql9scvl4jpijixczm2ky7mxffwq3srvxvc5q"; }; beamDeps = []; @@ -374,12 +374,12 @@ let ecto_psql_extras = buildMix rec { name = "ecto_psql_extras"; - version = "0.7.10"; + version = "0.7.11"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "123h3s4zpk5q618rcxlfz4axj3rz3cmyk68gps8c05sg3vc8qpjh"; + sha256 = "08qbsk5njwz48vj4nq7bb6jc1mhjf8ay5fhbr18hvx6lj8gizxny"; }; beamDeps = [ ecto_sql postgrex table_rex ]; @@ -478,12 +478,12 @@ let ex_doc = buildMix rec { name = "ex_doc"; - version = "0.29.3"; + version = "0.29.4"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1qdzflf1lbi5phg2vs8p3aznz0p8wmmx56qynp1ix008gdypiiix"; + sha256 = "1xf49d0ni08a83iankdj8fb6jyxm67wjl0gdwihwnimf6ykrjric"; }; beamDeps = [ earmark_parser makeup_elixir makeup_erlang ]; @@ -816,12 +816,12 @@ let makeup_elixir = buildMix rec { name = "makeup_elixir"; - version = "0.16.0"; + version = "0.16.1"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1rrqydcq2bshs577z7jbgdnrlg7cpnzc8n48kap4c2ln2gfcpci8"; + sha256 = "1ik7qw0d5xyc7dv3n33qxl49jfk92l565lbv1zc9n80vmm0s69z1"; }; beamDeps = [ makeup nimble_parsec ]; @@ -959,12 +959,12 @@ let nimble_parsec = buildMix rec { name = "nimble_parsec"; - version = "1.2.3"; + version = "1.3.1"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1c3hnppmjkwnqrc9vvm72kpliav0mqyyk4cjp7vsqccikgiqkmy8"; + sha256 = "0rxiw6jzz77v0j460wmzcprhdgn71g1hrz3mcc6djn7bnb0f70i6"; }; beamDeps = []; @@ -998,12 +998,12 @@ let open_api_spex = buildMix rec { name = "open_api_spex"; - version = "3.16.1"; + version = "3.16.3"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "1yyvvyzzi6k2l55fl4wijhrzzdjns95asxcbnikgh6hjmiwdfvzg"; + sha256 = "1bgcp0sfj9j95nb353dn66m81085sq5pwdzwq80x1xc8mgpydjqv"; }; beamDeps = [ jason plug poison ]; @@ -1336,12 +1336,12 @@ let swoosh = buildMix rec { name = "swoosh"; - version = "1.9.1"; + version = "1.10.2"; src = fetchHex { pkg = "${name}"; version = "${version}"; - sha256 = "07ipsrp34s18c9zd5kglqsdc8z7gxa9aadsrklj0zf6azzrzzpvn"; + sha256 = "0fm0vp0azzrbs53r967x5dgqrj3879dzvka5304wcjgdfkrzldhp"; }; beamDeps = [ cowboy ex_aws finch gen_smtp hackney jason mail mime plug_cowboy telemetry ]; diff --git a/pkgs/servers/alps/default.nix b/pkgs/servers/alps/default.nix index 7815cedd8c86e..e219d5a8c2014 100644 --- a/pkgs/servers/alps/default.nix +++ b/pkgs/servers/alps/default.nix @@ -45,6 +45,6 @@ buildGoModule rec { description = "A simple and extensible webmail."; homepage = "https://git.sr.ht/~migadu/alps"; license = licenses.mit; - maintainers = with maintainers; [ gordias booklearner madonius hmenke ]; + maintainers = with maintainers; [ booklearner madonius hmenke ]; }; } diff --git a/pkgs/servers/amqp/rabbitmq-server/default.nix b/pkgs/servers/amqp/rabbitmq-server/default.nix index c395427c4ce99..f0687e7987af0 100644 --- a/pkgs/servers/amqp/rabbitmq-server/default.nix +++ b/pkgs/servers/amqp/rabbitmq-server/default.nix @@ -38,12 +38,12 @@ in stdenv.mkDerivation rec { pname = "rabbitmq-server"; - version = "3.11.10"; + version = "3.12.0"; # when updating, consider bumping elixir version in all-packages.nix src = fetchurl { url = "https://github.com/rabbitmq/rabbitmq-server/releases/download/v${version}/${pname}-${version}.tar.xz"; - hash = "sha256-gZcUWN8SnCb93zUTqWDYtxUrT5655gfEnMax1NLHh+M="; + hash = "sha256-XHiFiKO4vi+gD2Cw6QnRCu5YHDKJviLETadmj1Vzr/Y="; }; nativeBuildInputs = [ unzip xmlto docbook_xml_dtd_45 docbook_xsl zip rsync python3 ]; diff --git a/pkgs/development/python-modules/apache-airflow/0001-Revert-fix-yarn-warning-from-d3-color-27139.patch b/pkgs/servers/apache-airflow/0001-Revert-fix-yarn-warning-from-d3-color-27139.patch index 4e6f56a7cf121..4e6f56a7cf121 100644 --- a/pkgs/development/python-modules/apache-airflow/0001-Revert-fix-yarn-warning-from-d3-color-27139.patch +++ b/pkgs/servers/apache-airflow/0001-Revert-fix-yarn-warning-from-d3-color-27139.patch diff --git a/pkgs/servers/apache-airflow/default.nix b/pkgs/servers/apache-airflow/default.nix new file mode 100644 index 0000000000000..20a5a85838975 --- /dev/null +++ b/pkgs/servers/apache-airflow/default.nix @@ -0,0 +1,50 @@ +{ lib +, fetchFromGitHub +, fetchPypi +, python3 +}: + +let + python = python3.override { + packageOverrides = pySelf: pySuper: { + # flask-appbuilder doesn't work with sqlalchemy 2.x, flask-appbuilder 3.x + # https://github.com/dpgaspar/Flask-AppBuilder/issues/2038 + flask-appbuilder = pySuper.flask-appbuilder.overridePythonAttrs (o: { + meta.broken = false; + }); + # a knock-on effect from overriding the sqlalchemy version + flask-sqlalchemy = pySuper.flask-sqlalchemy.overridePythonAttrs (o: { + src = fetchPypi { + pname = "Flask-SQLAlchemy"; + version = "2.5.1"; + hash = "sha256-K9pEtD58rLFdTgX/PMH4vJeTbMRkYjQkECv8LDXpWRI="; + }; + format = "setuptools"; + }); + # apache-airflow doesn't work with sqlalchemy 2.x + # https://github.com/apache/airflow/issues/28723 + sqlalchemy = pySuper.sqlalchemy.overridePythonAttrs (o: rec { + version = "1.4.48"; + src = fetchFromGitHub { + owner = "sqlalchemy"; + repo = "sqlalchemy"; + rev = "refs/tags/rel_${lib.replaceStrings [ "." ] [ "_" ] version}"; + hash = "sha256-qyD3uoxEnD2pdVvwpUlSqHB3drD4Zg/+ov4CzLFIlLs="; + }; + }); + + apache-airflow = pySelf.callPackage ./python-package.nix { }; + }; + }; +in +# See note in ./python-package.nix for +# instructions on manually testing the web UI +with python.pkgs; (toPythonApplication apache-airflow).overrideAttrs (_:{ + # Provide access to airflow's modified python package set + # for the cases where external scripts need to import + # airflow modules, though *caveat emptor* because many of + # these packages will not be built by hydra and many will + # not work at all due to the unexpected version overrides + # here. + passthru.pythonPackages = python.pkgs; +}) diff --git a/pkgs/development/python-modules/apache-airflow/package.json b/pkgs/servers/apache-airflow/package.json index a2691cd96ae2e..b15568593cc84 100644 --- a/pkgs/development/python-modules/apache-airflow/package.json +++ b/pkgs/servers/apache-airflow/package.json @@ -9,6 +9,7 @@ "build": "NODE_ENV=production webpack --progress --mode production", "lint": "eslint --ignore-path=.eslintignore --ext .js,.jsx,.ts,.tsx . && tsc", "lint:fix": "eslint --fix --ignore-path=.eslintignore --ext .js,.jsx,.ts,.tsx . && tsc", + "format": "yarn prettier --write .", "generate-api-types": "npx openapi-typescript \"../api_connexion/openapi/v1.yaml\" --output static/js/types/api-generated.ts && node alias-rest-types.js static/js/types/api-generated.ts" }, "author": "Apache", @@ -37,13 +38,14 @@ "@babel/preset-typescript": "^7.17.12", "@testing-library/jest-dom": "^5.16.0", "@testing-library/react": "^13.0.0", + "@types/color": "^3.0.3", "@types/react": "^18.0.12", "@types/react-dom": "^18.0.5", "@types/react-table": "^7.7.12", "@typescript-eslint/eslint-plugin": "^5.13.0", "@typescript-eslint/parser": "^5.0.0", "babel-jest": "^27.3.1", - "babel-loader": "^8.1.0", + "babel-loader": "^9.1.0", "clean-webpack-plugin": "^3.0.0", "copy-webpack-plugin": "^6.0.3", "css-loader": "5.2.7", @@ -51,8 +53,9 @@ "eslint": "^8.6.0", "eslint-config-airbnb": "^19.0.4", "eslint-config-airbnb-typescript": "^17.0.0", + "eslint-config-prettier": "^8.6.0", "eslint-plugin-html": "^6.0.2", - "eslint-plugin-import": "^2.25.3", + "eslint-plugin-import": "^2.27.5", "eslint-plugin-jsx-a11y": "^6.5.0", "eslint-plugin-node": "^11.1.0", "eslint-plugin-promise": "^4.2.1", @@ -67,14 +70,16 @@ "moment-locales-webpack-plugin": "^1.2.0", "nock": "^13.2.4", "openapi-typescript": "^5.4.1", + "prettier": "^2.8.4", "style-loader": "^1.2.1", "stylelint": "^13.6.1", + "stylelint-config-prettier": "^9.0.5", "stylelint-config-standard": "^20.0.0", "terser-webpack-plugin": "<5.0.0", "typescript": "^4.6.3", "url-loader": "4.1.0", "web-worker": "^1.2.0", - "webpack": "^5.73.0", + "webpack": "^5.76.0", "webpack-cli": "^4.0.0", "webpack-license-plugin": "^4.2.1", "webpack-manifest-plugin": "^4.0.0" @@ -93,7 +98,9 @@ "camelcase-keys": "^7.0.0", "chakra-react-select": "^4.0.0", "codemirror": "^5.59.1", + "color": "^4.2.3", "d3": "^3.4.4", + "d3-selection": "^3.0.0", "d3-shape": "^2.1.0", "d3-tip": "^0.9.1", "dagre-d3": "^0.6.4", @@ -105,16 +112,27 @@ "jquery": ">=3.5.0", "jshint": "^2.13.4", "lodash": "^4.17.21", - "moment-timezone": "^0.5.35", + "moment-timezone": "^0.5.43", "nvd3": "^1.8.6", "react": "^18.0.0", "react-dom": "^18.0.0", "react-icons": "^4.3.1", + "react-json-view": "^1.21.3", + "react-markdown": "^8.0.4", "react-query": "^3.39.1", "react-router-dom": "^6.3.0", "react-table": "^7.8.0", + "react-textarea-autosize": "^8.3.4", + "reactflow": "^11.4.0", "redoc": "^2.0.0-rc.72", + "remark-gfm": "^3.0.1", + "swagger-ui-dist": "4.1.3", + "tsconfig-paths": "^3.14.2", "type-fest": "^2.17.0", - "url-search-params-polyfill": "^8.1.0" + "url-search-params-polyfill": "^8.1.0", + "validator": "^13.9.0" + }, + "resolutions": { + "d3-color": "^3.1.0" } } diff --git a/pkgs/servers/apache-airflow/providers.nix b/pkgs/servers/apache-airflow/providers.nix new file mode 100644 index 0000000000000..9e4a39c49cef6 --- /dev/null +++ b/pkgs/servers/apache-airflow/providers.nix @@ -0,0 +1,319 @@ +# Warning: generated by update-providers.py, do not update manually +{ + airbyte = { + deps = [ "aiohttp" "asgiref" "requests" "requests-toolbelt" ]; + imports = [ "airflow.providers.airbyte.hooks.airbyte" "airflow.providers.airbyte.operators.airbyte" ]; + }; + alibaba = { + deps = [ "oss2" ]; + imports = [ "airflow.providers.alibaba.cloud.hooks.oss" "airflow.providers.alibaba.cloud.operators.oss" ]; + }; + amazon = { + deps = [ "adal" "apache-beam" "asgiref" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-auth-oauthlib" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-compute" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "googleapis-common-protos" "grpcio" "grpcio-gcp" "grpcio-status" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "oracledb" "pandas" "paramiko" "proto-plus" "psycopg2" "pymongo" "pyopenssl" "pysftp" "pyyaml" "redshift-connector" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; + imports = [ "airflow.providers.amazon.aws.hooks.appflow" "airflow.providers.amazon.aws.hooks.athena" "airflow.providers.amazon.aws.hooks.base_aws" "airflow.providers.amazon.aws.hooks.batch_client" "airflow.providers.amazon.aws.hooks.batch_waiters" "airflow.providers.amazon.aws.hooks.cloud_formation" "airflow.providers.amazon.aws.hooks.datasync" "airflow.providers.amazon.aws.hooks.dms" "airflow.providers.amazon.aws.hooks.dynamodb" "airflow.providers.amazon.aws.hooks.ec2" "airflow.providers.amazon.aws.hooks.ecr" "airflow.providers.amazon.aws.hooks.ecs" "airflow.providers.amazon.aws.hooks.eks" "airflow.providers.amazon.aws.hooks.elasticache_replication_group" "airflow.providers.amazon.aws.hooks.emr" "airflow.providers.amazon.aws.hooks.emr" "airflow.providers.amazon.aws.hooks.glacier" "airflow.providers.amazon.aws.hooks.glue" "airflow.providers.amazon.aws.hooks.glue_catalog" "airflow.providers.amazon.aws.hooks.glue_crawler" "airflow.providers.amazon.aws.hooks.kinesis" "airflow.providers.amazon.aws.hooks.lambda_function" "airflow.providers.amazon.aws.hooks.logs" "airflow.providers.amazon.aws.hooks.quicksight" "airflow.providers.amazon.aws.hooks.rds" "airflow.providers.amazon.aws.hooks.redshift_cluster" "airflow.providers.amazon.aws.hooks.redshift_data" "airflow.providers.amazon.aws.hooks.redshift_sql" "airflow.providers.amazon.aws.hooks.s3" "airflow.providers.amazon.aws.hooks.sagemaker" "airflow.providers.amazon.aws.hooks.secrets_manager" "airflow.providers.amazon.aws.hooks.ses" "airflow.providers.amazon.aws.hooks.sns" "airflow.providers.amazon.aws.hooks.sqs" "airflow.providers.amazon.aws.hooks.ssm" "airflow.providers.amazon.aws.hooks.step_function" "airflow.providers.amazon.aws.hooks.sts" "airflow.providers.amazon.aws.operators.appflow" "airflow.providers.amazon.aws.operators.athena" "airflow.providers.amazon.aws.operators.aws_lambda" "airflow.providers.amazon.aws.operators.batch" "airflow.providers.amazon.aws.operators.cloud_formation" "airflow.providers.amazon.aws.operators.datasync" "airflow.providers.amazon.aws.operators.dms" "airflow.providers.amazon.aws.operators.ec2" "airflow.providers.amazon.aws.operators.ecs" "airflow.providers.amazon.aws.operators.eks" "airflow.providers.amazon.aws.operators.emr" "airflow.providers.amazon.aws.operators.emr" "airflow.providers.amazon.aws.operators.glacier" "airflow.providers.amazon.aws.operators.glue" "airflow.providers.amazon.aws.operators.glue_crawler" "airflow.providers.amazon.aws.operators.lambda_function" "airflow.providers.amazon.aws.operators.quicksight" "airflow.providers.amazon.aws.operators.rds" "airflow.providers.amazon.aws.operators.redshift_cluster" "airflow.providers.amazon.aws.operators.redshift_data" "airflow.providers.amazon.aws.operators.redshift_sql" "airflow.providers.amazon.aws.operators.s3" "airflow.providers.amazon.aws.operators.sagemaker" "airflow.providers.amazon.aws.operators.sns" "airflow.providers.amazon.aws.operators.sqs" "airflow.providers.amazon.aws.operators.step_function" ]; + }; + apache_beam = { + deps = [ "adal" "apache-beam" "asgiref" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-auth-oauthlib" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-compute" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "googleapis-common-protos" "grpcio" "grpcio-gcp" "grpcio-status" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "oracledb" "pandas" "paramiko" "proto-plus" "psycopg2" "pymongo" "pyopenssl" "pysftp" "pyyaml" "redshift-connector" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; + imports = [ "airflow.providers.apache.beam.hooks.beam" "airflow.providers.apache.beam.operators.beam" ]; + }; + apache_cassandra = { + deps = [ "cassandra-driver" ]; + imports = [ "airflow.providers.apache.cassandra.hooks.cassandra" ]; + }; + apache_drill = { + deps = [ ]; + imports = [ "airflow.providers.apache.drill.hooks.drill" "airflow.providers.apache.drill.operators.drill" ]; + }; + apache_druid = { + deps = [ "adal" "apache-beam" "asgiref" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-auth-oauthlib" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-compute" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "googleapis-common-protos" "grpcio" "grpcio-gcp" "grpcio-status" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "oracledb" "pandas" "paramiko" "proto-plus" "psycopg2" "pydruid" "pymongo" "pyopenssl" "pysftp" "pyyaml" "redshift-connector" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; + imports = [ "airflow.providers.apache.druid.hooks.druid" "airflow.providers.apache.druid.operators.druid" "airflow.providers.apache.druid.operators.druid_check" ]; + }; + apache_flink = { + deps = [ "asgiref" "cryptography" "kubernetes" ]; + imports = [ "airflow.providers.apache.flink.operators.flink_kubernetes" ]; + }; + apache_hdfs = { + deps = [ ]; + imports = [ "airflow.providers.apache.hdfs.hooks.hdfs" "airflow.providers.apache.hdfs.hooks.webhdfs" ]; + }; + apache_hive = { + deps = [ "adal" "apache-beam" "asgiref" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-auth-oauthlib" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-compute" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "googleapis-common-protos" "grpcio" "grpcio-gcp" "grpcio-status" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "oracledb" "pandas" "paramiko" "proto-plus" "psycopg2" "pymongo" "pyopenssl" "pysftp" "pyyaml" "redshift-connector" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; + imports = [ "airflow.providers.apache.hive.hooks.hive" "airflow.providers.apache.hive.operators.hive" "airflow.providers.apache.hive.operators.hive_stats" ]; + }; + apache_impala = { + deps = [ ]; + imports = [ "airflow.providers.apache.impala.hooks.impala" ]; + }; + apache_kylin = { + deps = [ ]; + imports = [ "airflow.providers.apache.kylin.hooks.kylin" "airflow.providers.apache.kylin.operators.kylin_cube" ]; + }; + apache_livy = { + deps = [ "aiohttp" "asgiref" "requests" "requests-toolbelt" ]; + imports = [ "airflow.providers.apache.livy.hooks.livy" "airflow.providers.apache.livy.operators.livy" ]; + }; + apache_pig = { + deps = [ ]; + imports = [ "airflow.providers.apache.pig.hooks.pig" "airflow.providers.apache.pig.operators.pig" ]; + }; + apache_pinot = { + deps = [ ]; + imports = [ "airflow.providers.apache.pinot.hooks.pinot" ]; + }; + apache_spark = { + deps = [ "pyspark" ]; + imports = [ "airflow.providers.apache.spark.hooks.spark_jdbc" "airflow.providers.apache.spark.hooks.spark_jdbc_script" "airflow.providers.apache.spark.hooks.spark_sql" "airflow.providers.apache.spark.hooks.spark_submit" "airflow.providers.apache.spark.operators.spark_jdbc" "airflow.providers.apache.spark.operators.spark_sql" "airflow.providers.apache.spark.operators.spark_submit" ]; + }; + apache_sqoop = { + deps = [ ]; + imports = [ "airflow.providers.apache.sqoop.hooks.sqoop" "airflow.providers.apache.sqoop.operators.sqoop" ]; + }; + arangodb = { + deps = [ "python-arango" ]; + imports = [ "airflow.providers.arangodb.hooks.arangodb" "airflow.providers.arangodb.operators.arangodb" ]; + }; + asana = { + deps = [ "asana" ]; + imports = [ "airflow.providers.asana.hooks.asana" "airflow.providers.asana.operators.asana_tasks" ]; + }; + atlassian_jira = { + deps = [ "atlassian-python-api" ]; + imports = [ "airflow.providers.atlassian.jira.hooks.jira" "airflow.providers.atlassian.jira.operators.jira" ]; + }; + celery = { + deps = [ "celery" "flower" ]; + imports = [ ]; + }; + cloudant = { + deps = [ ]; + imports = [ "airflow.providers.cloudant.hooks.cloudant" ]; + }; + cncf_kubernetes = { + deps = [ "asgiref" "cryptography" "kubernetes" ]; + imports = [ "airflow.providers.cncf.kubernetes.hooks.kubernetes" "airflow.providers.cncf.kubernetes.operators.kubernetes_pod" "airflow.providers.cncf.kubernetes.operators.pod" "airflow.providers.cncf.kubernetes.operators.spark_kubernetes" ]; + }; + common_sql = { + deps = [ "sqlparse" ]; + imports = [ "airflow.providers.common.sql.hooks.sql" "airflow.providers.common.sql.operators.sql" ]; + }; + databricks = { + deps = [ "aiohttp" "databricks-sql-connector" "requests" ]; + imports = [ "airflow.providers.databricks.hooks.databricks" "airflow.providers.databricks.hooks.databricks_base" "airflow.providers.databricks.hooks.databricks_sql" "airflow.providers.databricks.operators.databricks" "airflow.providers.databricks.operators.databricks_repos" "airflow.providers.databricks.operators.databricks_sql" ]; + }; + datadog = { + deps = [ "datadog" ]; + imports = [ "airflow.providers.datadog.hooks.datadog" ]; + }; + dbt_cloud = { + deps = [ "aiohttp" "asgiref" "requests" "requests-toolbelt" ]; + imports = [ "airflow.providers.dbt.cloud.hooks.dbt" "airflow.providers.dbt.cloud.operators.dbt" ]; + }; + dingding = { + deps = [ "aiohttp" "asgiref" "requests" "requests-toolbelt" ]; + imports = [ "airflow.providers.dingding.hooks.dingding" "airflow.providers.dingding.operators.dingding" ]; + }; + discord = { + deps = [ "aiohttp" "asgiref" "requests" "requests-toolbelt" ]; + imports = [ "airflow.providers.discord.hooks.discord_webhook" "airflow.providers.discord.operators.discord_webhook" ]; + }; + docker = { + deps = [ "docker" "python-dotenv" ]; + imports = [ "airflow.providers.docker.hooks.docker" "airflow.providers.docker.operators.docker" "airflow.providers.docker.operators.docker_swarm" ]; + }; + elasticsearch = { + deps = [ "elasticsearch" "elasticsearch-dsl" ]; + imports = [ "airflow.providers.elasticsearch.hooks.elasticsearch" ]; + }; + exasol = { + deps = [ "pandas" ]; + imports = [ "airflow.providers.exasol.hooks.exasol" "airflow.providers.exasol.operators.exasol" ]; + }; + facebook = { + deps = [ ]; + imports = [ "airflow.providers.facebook.ads.hooks.ads" ]; + }; + ftp = { + deps = [ ]; + imports = [ "airflow.providers.ftp.hooks.ftp" "airflow.providers.ftp.operators.ftp" ]; + }; + github = { + deps = [ ]; + imports = [ "airflow.providers.github.hooks.github" "airflow.providers.github.operators.github" ]; + }; + google = { + deps = [ "adal" "apache-beam" "asgiref" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-auth-oauthlib" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-compute" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "googleapis-common-protos" "grpcio" "grpcio-gcp" "grpcio-status" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "oracledb" "pandas" "paramiko" "proto-plus" "psycopg2" "pymongo" "pyopenssl" "pysftp" "pyyaml" "redshift-connector" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; + imports = [ "airflow.providers.google.ads.hooks.ads" "airflow.providers.google.ads.operators.ads" "airflow.providers.google.cloud.hooks.automl" "airflow.providers.google.cloud.hooks.bigquery" "airflow.providers.google.cloud.hooks.bigquery_dts" "airflow.providers.google.cloud.hooks.bigtable" "airflow.providers.google.cloud.hooks.cloud_build" "airflow.providers.google.cloud.hooks.cloud_composer" "airflow.providers.google.cloud.hooks.cloud_memorystore" "airflow.providers.google.cloud.hooks.cloud_sql" "airflow.providers.google.cloud.hooks.cloud_storage_transfer_service" "airflow.providers.google.cloud.hooks.compute" "airflow.providers.google.cloud.hooks.compute_ssh" "airflow.providers.google.cloud.hooks.datacatalog" "airflow.providers.google.cloud.hooks.dataflow" "airflow.providers.google.cloud.hooks.dataform" "airflow.providers.google.cloud.hooks.datafusion" "airflow.providers.google.cloud.hooks.dataplex" "airflow.providers.google.cloud.hooks.dataprep" "airflow.providers.google.cloud.hooks.dataproc" "airflow.providers.google.cloud.hooks.dataproc_metastore" "airflow.providers.google.cloud.hooks.datastore" "airflow.providers.google.cloud.hooks.dlp" "airflow.providers.google.cloud.hooks.functions" "airflow.providers.google.cloud.hooks.gcs" "airflow.providers.google.cloud.hooks.gdm" "airflow.providers.google.cloud.hooks.kms" "airflow.providers.google.cloud.hooks.kubernetes_engine" "airflow.providers.google.cloud.hooks.life_sciences" "airflow.providers.google.cloud.hooks.looker" "airflow.providers.google.cloud.hooks.mlengine" "airflow.providers.google.cloud.hooks.natural_language" "airflow.providers.google.cloud.hooks.os_login" "airflow.providers.google.cloud.hooks.pubsub" "airflow.providers.google.cloud.hooks.secret_manager" "airflow.providers.google.cloud.hooks.spanner" "airflow.providers.google.cloud.hooks.speech_to_text" "airflow.providers.google.cloud.hooks.stackdriver" "airflow.providers.google.cloud.hooks.tasks" "airflow.providers.google.cloud.hooks.text_to_speech" "airflow.providers.google.cloud.hooks.translate" "airflow.providers.google.cloud.hooks.vertex_ai.auto_ml" "airflow.providers.google.cloud.hooks.vertex_ai.batch_prediction_job" "airflow.providers.google.cloud.hooks.vertex_ai.custom_job" "airflow.providers.google.cloud.hooks.vertex_ai.dataset" "airflow.providers.google.cloud.hooks.vertex_ai.endpoint_service" "airflow.providers.google.cloud.hooks.vertex_ai.hyperparameter_tuning_job" "airflow.providers.google.cloud.hooks.vertex_ai.model_service" "airflow.providers.google.cloud.hooks.video_intelligence" "airflow.providers.google.cloud.hooks.vision" "airflow.providers.google.cloud.hooks.workflows" "airflow.providers.google.cloud.operators.automl" "airflow.providers.google.cloud.operators.bigquery" "airflow.providers.google.cloud.operators.bigquery_dts" "airflow.providers.google.cloud.operators.bigtable" "airflow.providers.google.cloud.operators.cloud_base" "airflow.providers.google.cloud.operators.cloud_build" "airflow.providers.google.cloud.operators.cloud_composer" "airflow.providers.google.cloud.operators.cloud_memorystore" "airflow.providers.google.cloud.operators.cloud_sql" "airflow.providers.google.cloud.operators.cloud_storage_transfer_service" "airflow.providers.google.cloud.operators.compute" "airflow.providers.google.cloud.operators.datacatalog" "airflow.providers.google.cloud.operators.dataflow" "airflow.providers.google.cloud.operators.dataform" "airflow.providers.google.cloud.operators.datafusion" "airflow.providers.google.cloud.operators.dataplex" "airflow.providers.google.cloud.operators.dataprep" "airflow.providers.google.cloud.operators.dataproc" "airflow.providers.google.cloud.operators.dataproc_metastore" "airflow.providers.google.cloud.operators.datastore" "airflow.providers.google.cloud.operators.dlp" "airflow.providers.google.cloud.operators.functions" "airflow.providers.google.cloud.operators.gcs" "airflow.providers.google.cloud.operators.kubernetes_engine" "airflow.providers.google.cloud.operators.life_sciences" "airflow.providers.google.cloud.operators.looker" "airflow.providers.google.cloud.operators.mlengine" "airflow.providers.google.cloud.operators.natural_language" "airflow.providers.google.cloud.operators.pubsub" "airflow.providers.google.cloud.operators.spanner" "airflow.providers.google.cloud.operators.speech_to_text" "airflow.providers.google.cloud.operators.stackdriver" "airflow.providers.google.cloud.operators.tasks" "airflow.providers.google.cloud.operators.text_to_speech" "airflow.providers.google.cloud.operators.translate" "airflow.providers.google.cloud.operators.translate_speech" "airflow.providers.google.cloud.operators.translate_speech" "airflow.providers.google.cloud.operators.vertex_ai.auto_ml" "airflow.providers.google.cloud.operators.vertex_ai.batch_prediction_job" "airflow.providers.google.cloud.operators.vertex_ai.custom_job" "airflow.providers.google.cloud.operators.vertex_ai.dataset" "airflow.providers.google.cloud.operators.vertex_ai.endpoint_service" "airflow.providers.google.cloud.operators.vertex_ai.hyperparameter_tuning_job" "airflow.providers.google.cloud.operators.vertex_ai.model_service" "airflow.providers.google.cloud.operators.video_intelligence" "airflow.providers.google.cloud.operators.vision" "airflow.providers.google.cloud.operators.workflows" "airflow.providers.google.common.hooks.base_google" "airflow.providers.google.common.hooks.discovery_api" "airflow.providers.google.firebase.hooks.firestore" "airflow.providers.google.firebase.operators.firestore" "airflow.providers.google.leveldb.hooks.leveldb" "airflow.providers.google.leveldb.operators.leveldb" "airflow.providers.google.marketing_platform.hooks.analytics" "airflow.providers.google.marketing_platform.hooks.campaign_manager" "airflow.providers.google.marketing_platform.hooks.display_video" "airflow.providers.google.marketing_platform.hooks.search_ads" "airflow.providers.google.marketing_platform.operators.analytics" "airflow.providers.google.marketing_platform.operators.campaign_manager" "airflow.providers.google.marketing_platform.operators.display_video" "airflow.providers.google.marketing_platform.operators.search_ads" "airflow.providers.google.suite.hooks.calendar" "airflow.providers.google.suite.hooks.drive" "airflow.providers.google.suite.hooks.sheets" "airflow.providers.google.suite.operators.sheets" ]; + }; + grpc = { + deps = [ "google-auth" "google-auth-httplib2" "grpcio" ]; + imports = [ "airflow.providers.grpc.hooks.grpc" "airflow.providers.grpc.operators.grpc" ]; + }; + hashicorp = { + deps = [ "adal" "apache-beam" "asgiref" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-auth-oauthlib" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-compute" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "googleapis-common-protos" "grpcio" "grpcio-gcp" "grpcio-status" "httpx" "hvac" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "oracledb" "pandas" "paramiko" "proto-plus" "psycopg2" "pymongo" "pyopenssl" "pysftp" "pyyaml" "redshift-connector" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; + imports = [ "airflow.providers.hashicorp.hooks.vault" ]; + }; + http = { + deps = [ "aiohttp" "asgiref" "requests" "requests-toolbelt" ]; + imports = [ "airflow.providers.http.hooks.http" "airflow.providers.http.operators.http" ]; + }; + imap = { + deps = [ ]; + imports = [ "airflow.providers.imap.hooks.imap" ]; + }; + influxdb = { + deps = [ "influxdb-client" "requests" ]; + imports = [ "airflow.providers.influxdb.hooks.influxdb" "airflow.providers.influxdb.operators.influxdb" ]; + }; + jdbc = { + deps = [ "jaydebeapi" ]; + imports = [ "airflow.providers.jdbc.hooks.jdbc" "airflow.providers.jdbc.operators.jdbc" ]; + }; + jenkins = { + deps = [ "python-jenkins" ]; + imports = [ "airflow.providers.jenkins.hooks.jenkins" "airflow.providers.jenkins.operators.jenkins_job_trigger" ]; + }; + microsoft_azure = { + deps = [ "adal" "apache-beam" "asgiref" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-auth-oauthlib" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-compute" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "googleapis-common-protos" "grpcio" "grpcio-gcp" "grpcio-status" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "oracledb" "pandas" "paramiko" "proto-plus" "psycopg2" "pymongo" "pyopenssl" "pysftp" "pyyaml" "redshift-connector" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; + imports = [ "airflow.providers.microsoft.azure.hooks.adx" "airflow.providers.microsoft.azure.hooks.asb" "airflow.providers.microsoft.azure.hooks.base_azure" "airflow.providers.microsoft.azure.hooks.batch" "airflow.providers.microsoft.azure.hooks.container_instance" "airflow.providers.microsoft.azure.hooks.container_registry" "airflow.providers.microsoft.azure.hooks.container_volume" "airflow.providers.microsoft.azure.hooks.cosmos" "airflow.providers.microsoft.azure.hooks.data_factory" "airflow.providers.microsoft.azure.hooks.data_lake" "airflow.providers.microsoft.azure.hooks.data_lake" "airflow.providers.microsoft.azure.hooks.fileshare" "airflow.providers.microsoft.azure.hooks.synapse" "airflow.providers.microsoft.azure.hooks.wasb" "airflow.providers.microsoft.azure.operators.adls" "airflow.providers.microsoft.azure.operators.adx" "airflow.providers.microsoft.azure.operators.asb" "airflow.providers.microsoft.azure.operators.batch" "airflow.providers.microsoft.azure.operators.container_instances" "airflow.providers.microsoft.azure.operators.cosmos" "airflow.providers.microsoft.azure.operators.data_factory" "airflow.providers.microsoft.azure.operators.synapse" "airflow.providers.microsoft.azure.operators.wasb_delete_blob" ]; + }; + microsoft_mssql = { + deps = [ ]; + imports = [ "airflow.providers.microsoft.mssql.hooks.mssql" "airflow.providers.microsoft.mssql.operators.mssql" ]; + }; + microsoft_psrp = { + deps = [ "pypsrp" ]; + imports = [ "airflow.providers.microsoft.psrp.hooks.psrp" "airflow.providers.microsoft.psrp.operators.psrp" ]; + }; + microsoft_winrm = { + deps = [ "pywinrm" ]; + imports = [ "airflow.providers.microsoft.winrm.hooks.winrm" "airflow.providers.microsoft.winrm.operators.winrm" ]; + }; + mongo = { + deps = [ "dnspython" "pymongo" ]; + imports = [ "airflow.providers.mongo.hooks.mongo" ]; + }; + mysql = { + deps = [ "adal" "apache-beam" "asgiref" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-auth-oauthlib" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-compute" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "googleapis-common-protos" "grpcio" "grpcio-gcp" "grpcio-status" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "oracledb" "pandas" "paramiko" "proto-plus" "psycopg2" "pymongo" "pyopenssl" "pysftp" "pyyaml" "redshift-connector" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; + imports = [ "airflow.providers.mysql.hooks.mysql" "airflow.providers.mysql.operators.mysql" ]; + }; + neo4j = { + deps = [ "neo4j" ]; + imports = [ "airflow.providers.neo4j.hooks.neo4j" "airflow.providers.neo4j.operators.neo4j" ]; + }; + odbc = { + deps = [ "pyodbc" ]; + imports = [ "airflow.providers.odbc.hooks.odbc" ]; + }; + openfaas = { + deps = [ ]; + imports = [ "airflow.providers.openfaas.hooks.openfaas" ]; + }; + opsgenie = { + deps = [ ]; + imports = [ "airflow.providers.opsgenie.hooks.opsgenie" "airflow.providers.opsgenie.operators.opsgenie" ]; + }; + oracle = { + deps = [ "oracledb" ]; + imports = [ "airflow.providers.oracle.hooks.oracle" "airflow.providers.oracle.operators.oracle" ]; + }; + pagerduty = { + deps = [ ]; + imports = [ "airflow.providers.pagerduty.hooks.pagerduty" "airflow.providers.pagerduty.hooks.pagerduty_events" ]; + }; + papermill = { + deps = [ ]; + imports = [ "airflow.providers.papermill.operators.papermill" ]; + }; + plexus = { + deps = [ "arrow" ]; + imports = [ "airflow.providers.plexus.hooks.plexus" "airflow.providers.plexus.operators.job" ]; + }; + postgres = { + deps = [ "adal" "apache-beam" "asgiref" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-auth-oauthlib" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-compute" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "googleapis-common-protos" "grpcio" "grpcio-gcp" "grpcio-status" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "oracledb" "pandas" "paramiko" "proto-plus" "psycopg2" "pymongo" "pyopenssl" "pysftp" "pyyaml" "redshift-connector" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; + imports = [ "airflow.providers.postgres.hooks.postgres" "airflow.providers.postgres.operators.postgres" ]; + }; + presto = { + deps = [ "adal" "apache-beam" "asgiref" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-auth-oauthlib" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-compute" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "googleapis-common-protos" "grpcio" "grpcio-gcp" "grpcio-status" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "oracledb" "pandas" "paramiko" "proto-plus" "psycopg2" "pymongo" "pyopenssl" "pysftp" "pyyaml" "redshift-connector" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; + imports = [ "airflow.providers.presto.hooks.presto" ]; + }; + qubole = { + deps = [ "qds_sdk" ]; + imports = [ "airflow.providers.qubole.hooks.qubole" "airflow.providers.qubole.hooks.qubole_check" "airflow.providers.qubole.operators.qubole" "airflow.providers.qubole.operators.qubole_check" ]; + }; + redis = { + deps = [ "redis" ]; + imports = [ "airflow.providers.redis.hooks.redis" "airflow.providers.redis.operators.redis_publish" ]; + }; + salesforce = { + deps = [ "pandas" "simple-salesforce" ]; + imports = [ "airflow.providers.salesforce.hooks.salesforce" "airflow.providers.salesforce.operators.bulk" "airflow.providers.salesforce.operators.salesforce_apex_rest" ]; + }; + samba = { + deps = [ "smbprotocol" ]; + imports = [ "airflow.providers.samba.hooks.samba" ]; + }; + segment = { + deps = [ ]; + imports = [ "airflow.providers.segment.hooks.segment" "airflow.providers.segment.operators.segment_track_event" ]; + }; + sendgrid = { + deps = [ "sendgrid" ]; + imports = [ ]; + }; + sftp = { + deps = [ "paramiko" "pysftp" "sshtunnel" ]; + imports = [ "airflow.providers.sftp.hooks.sftp" "airflow.providers.sftp.operators.sftp" ]; + }; + singularity = { + deps = [ ]; + imports = [ "airflow.providers.singularity.operators.singularity" ]; + }; + slack = { + deps = [ "slack-sdk" ]; + imports = [ "airflow.providers.slack.hooks.slack" "airflow.providers.slack.hooks.slack_webhook" "airflow.providers.slack.operators.slack" "airflow.providers.slack.operators.slack_webhook" ]; + }; + smtp = { + deps = [ ]; + imports = [ "airflow.providers.smtp.hooks.smtp" "airflow.providers.smtp.operators.smtp" ]; + }; + snowflake = { + deps = [ "slack-sdk" "snowflake-connector-python" "snowflake-sqlalchemy" ]; + imports = [ "airflow.providers.snowflake.hooks.snowflake" "airflow.providers.snowflake.operators.snowflake" ]; + }; + sqlite = { + deps = [ ]; + imports = [ "airflow.providers.sqlite.hooks.sqlite" "airflow.providers.sqlite.operators.sqlite" ]; + }; + ssh = { + deps = [ "paramiko" "sshtunnel" ]; + imports = [ "airflow.providers.ssh.hooks.ssh" "airflow.providers.ssh.operators.ssh" ]; + }; + tableau = { + deps = [ ]; + imports = [ "airflow.providers.tableau.hooks.tableau" "airflow.providers.tableau.operators.tableau" ]; + }; + tabular = { + deps = [ ]; + imports = [ "airflow.providers.tabular.hooks.tabular" ]; + }; + telegram = { + deps = [ "python-telegram-bot" ]; + imports = [ "airflow.providers.telegram.hooks.telegram" "airflow.providers.telegram.operators.telegram" ]; + }; + trino = { + deps = [ "adal" "apache-beam" "asgiref" "azure-batch" "azure-cosmos" "azure-datalake-store" "azure-identity" "azure-keyvault-secrets" "azure-mgmt-containerinstance" "azure-mgmt-datafactory" "azure-mgmt-datalake-store" "azure-mgmt-resource" "azure-servicebus" "azure-storage-blob" "azure-storage-common" "azure-storage-file" "azure-synapse-spark" "boto3" "cassandra-driver" "cryptography" "dnspython" "google-api-core" "google-api-python-client" "google-auth" "google-auth-httplib2" "google-auth-oauthlib" "google-cloud-automl" "google-cloud-bigquery-datatransfer" "google-cloud-bigtable" "google-cloud-compute" "google-cloud-container" "google-cloud-datacatalog" "google-cloud-dataproc" "google-cloud-dlp" "google-cloud-kms" "google-cloud-language" "google-cloud-logging" "google-cloud-monitoring" "google-cloud-pubsub" "google-cloud-redis" "google-cloud-secret-manager" "google-cloud-spanner" "google-cloud-speech" "google-cloud-storage" "google-cloud-tasks" "google-cloud-texttospeech" "google-cloud-translate" "google-cloud-videointelligence" "google-cloud-vision" "googleapis-common-protos" "grpcio" "grpcio-gcp" "grpcio-status" "httpx" "json-merge-patch" "jsonpath-ng" "kubernetes" "mysqlclient" "oracledb" "pandas" "paramiko" "proto-plus" "psycopg2" "pymongo" "pyopenssl" "pysftp" "pyyaml" "redshift-connector" "simple-salesforce" "smbprotocol" "sshtunnel" "thrift" "vertica-python" ]; + imports = [ "airflow.providers.trino.hooks.trino" "airflow.providers.trino.operators.trino" ]; + }; + vertica = { + deps = [ "vertica-python" ]; + imports = [ "airflow.providers.vertica.hooks.vertica" "airflow.providers.vertica.operators.vertica" ]; + }; + yandex = { + deps = [ ]; + imports = [ "airflow.providers.yandex.hooks.yandex" "airflow.providers.yandex.hooks.yandexcloud_dataproc" "airflow.providers.yandex.operators.yandexcloud_dataproc" ]; + }; + zendesk = { + deps = [ ]; + imports = [ "airflow.providers.zendesk.hooks.zendesk" ]; + }; +} diff --git a/pkgs/development/python-modules/apache-airflow/default.nix b/pkgs/servers/apache-airflow/python-package.nix index 0a7f8e7280fde..7be16894e0b90 100644 --- a/pkgs/development/python-modules/apache-airflow/default.nix +++ b/pkgs/servers/apache-airflow/python-package.nix @@ -5,6 +5,7 @@ , fetchFromGitHub , alembic , argcomplete +, asgiref , attrs , blinker , cached-property @@ -48,6 +49,7 @@ , pathspec , pendulum , psutil +, pydantic , pygments , pyjwt , python-daemon @@ -58,6 +60,7 @@ , pythonOlder , pyyaml , rich +, rich-argparse , setproctitle , sqlalchemy , sqlalchemy-jsonfield @@ -68,8 +71,10 @@ , typing-extensions , unicodecsv , werkzeug -, pytestCheckHook , freezegun +, pytest-asyncio +, pytestCheckHook +, time-machine , mkYarnPackage , writeScript @@ -77,7 +82,7 @@ , enabledProviders ? [] }: let - version = "2.5.1"; + version = "2.6.0"; airflow-src = fetchFromGitHub rec { owner = "apache"; @@ -86,7 +91,7 @@ let # Download using the git protocol rather than using tarballs, because the # GitHub archive tarballs don't appear to include tests forceFetchGit = true; - hash = "sha256-BuJfE6SONTNonUvacOAIdZe0QicdBtx7k186TJZpQOs="; + hash = "sha256-CsLOj68+tSOI7drZq6QH+C2EB/9trg5cFAYAQp/06m8="; }; # airflow bundles a web interface, which is built using webpack by an undocumented shell script in airflow's source tree. @@ -141,6 +146,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ alembic argcomplete + asgiref attrs blinker cached-property @@ -183,6 +189,7 @@ buildPythonPackage rec { pathspec pendulum psutil + pydantic pygments pyjwt python-daemon @@ -192,6 +199,7 @@ buildPythonPackage rec { python3-openid pyyaml rich + rich-argparse setproctitle sqlalchemy sqlalchemy-jsonfield @@ -212,7 +220,9 @@ buildPythonPackage rec { nativeCheckInputs = [ freezegun + pytest-asyncio pytestCheckHook + time-machine ]; # By default, source code of providers is included but unusable due to missing @@ -223,7 +233,7 @@ buildPythonPackage rec { postPatch = '' substituteInPlace setup.cfg \ --replace "colorlog>=4.0.2, <5.0" "colorlog" \ - --replace "flask-appbuilder==4.1.4" "flask-appbuilder>=4.1.3" \ + --replace "flask-appbuilder==4.3.0" "flask-appbuilder>=4.3.0" \ --replace "pathspec~=0.9.0" "pathspec" '' + lib.optionalString stdenv.isDarwin '' # Fix failing test on Hydra @@ -281,9 +291,6 @@ buildPythonPackage rec { cd ./pkgs/development/python-modules/apache-airflow curl -O https://raw.githubusercontent.com/apache/airflow/$new_version/airflow/www/yarn.lock curl -O https://raw.githubusercontent.com/apache/airflow/$new_version/airflow/www/package.json - # Revert this commit which seems to break with our version of yarn - # https://github.com/apache/airflow/commit/b9e133e40c2848b0d555051a99bf8d2816fd28a7 - patch -p3 < 0001-Revert-fix-yarn-warning-from-d3-color-27139.patch yarn2nix > yarn.nix # update provider dependencies @@ -293,7 +300,7 @@ buildPythonPackage rec { # Note on testing the web UI: # You can (manually) test the web UI as follows: # - # nix shell .#python3Packages.apache-airflow + # nix shell .#apache-airflow # airflow db reset # WARNING: this will wipe any existing db state you might have! # airflow db init # airflow standalone diff --git a/pkgs/development/python-modules/apache-airflow/update-providers.py b/pkgs/servers/apache-airflow/update-providers.py index ed24bdaf01d72..16adc8f41ffc2 100755 --- a/pkgs/development/python-modules/apache-airflow/update-providers.py +++ b/pkgs/servers/apache-airflow/update-providers.py @@ -13,12 +13,13 @@ from urllib.request import urlopen from urllib.error import HTTPError import yaml -PKG_SET = "pkgs.python3Packages" +PKG_SET = "apache-airflow.pythonPackages" # If some requirements are matched by multiple or no Python packages, the # following can be used to choose the correct one PKG_PREFERENCES = { 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-3466,6 +3789,14 @@ aria-query@^5.0.0: resolved "https://registry.yarnpkg.com/aria-query/-/aria-query-5.0.0.tgz#210c21aaf469613ee8c9a62c7f86525e058db52c" integrity sha512-V+SM7AbUwJ+EBnB8+DXs0hPZHO0W6pqBcc0dW90OwtVG02PswOu/teuARoLQjdDOH+t9pJgGnW5/Qmouf3gPJg== +array-buffer-byte-length@^1.0.0: + version "1.0.0" + resolved "https://registry.yarnpkg.com/array-buffer-byte-length/-/array-buffer-byte-length-1.0.0.tgz#fabe8bc193fea865f317fe7807085ee0dee5aead" + integrity sha512-LPuwb2P+NrQw3XhxGc36+XSvuBPopovXYTR9Ew++Du9Yb/bx5AzBfrIsBoj0EZUifjQU+sHL21sseZ3jerWO/A== + dependencies: + call-bind "^1.0.2" + is-array-buffer "^3.0.1" + array-includes@^3.1.3: version "3.1.3" resolved "https://registry.yarnpkg.com/array-includes/-/array-includes-3.1.3.tgz#c7f619b382ad2afaf5326cddfdc0afc61af7690a" @@ -3488,6 +3819,17 @@ array-includes@^3.1.4, array-includes@^3.1.5: get-intrinsic "^1.1.1" is-string "^1.0.7" +array-includes@^3.1.6: + version "3.1.6" + resolved "https://registry.yarnpkg.com/array-includes/-/array-includes-3.1.6.tgz#9e9e720e194f198266ba9e18c29e6a9b0e4b225f" + integrity sha512-sgTbLvL6cNnw24FnbaDyjmvddQ2ML8arZsgaJhoABMoplz/4QRhtrYS+alr1BUM1Bwp6dhx8vVCBSLG+StwOFw== + dependencies: + call-bind "^1.0.2" + define-properties "^1.1.4" + es-abstract "^1.20.4" + get-intrinsic "^1.1.3" + is-string "^1.0.7" + array-union@^1.0.1: version "1.0.2" resolved "https://registry.yarnpkg.com/array-union/-/array-union-1.0.2.tgz#9a34410e4f4e3da23dea375be5be70f24778ec39" @@ -3505,14 +3847,14 @@ array-uniq@^1.0.1: resolved "https://registry.yarnpkg.com/array-uniq/-/array-uniq-1.0.3.tgz#af6ac877a25cc7f74e058894753858dfdb24fdb6" integrity sha1-r2rId6Jcx/dOBYiUdThY39sk/bY= -array.prototype.flat@^1.2.5: - version "1.3.0" - resolved "https://registry.yarnpkg.com/array.prototype.flat/-/array.prototype.flat-1.3.0.tgz#0b0c1567bf57b38b56b4c97b8aa72ab45e4adc7b" - integrity 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dependencies: + call-bind "^1.0.2" + define-properties "^1.1.4" + es-abstract "^1.20.4" + es-shim-unscopables "^1.0.0" + arrify@^1.0.1: version "1.0.1" resolved "https://registry.yarnpkg.com/arrify/-/arrify-1.0.1.tgz#898508da2226f380df904728456849c1501a4b0d" integrity sha1-iYUI2iIm84DfkEcoRWhJwVAaSw0= +asap@~2.0.3: + version "2.0.6" + resolved "https://registry.yarnpkg.com/asap/-/asap-2.0.6.tgz#e50347611d7e690943208bbdafebcbc2fb866d46" + integrity sha512-BSHWgDSAiKs50o2Re8ppvp3seVHXSRM44cdSsT9FfNEUUZLOGWVCsiWaRPWM1Znn+mqZ1OfVZ3z3DWEzSp7hRA== + ast-types-flow@^0.0.7: version "0.0.7" resolved "https://registry.yarnpkg.com/ast-types-flow/-/ast-types-flow-0.0.7.tgz#f70b735c6bca1a5c9c22d982c3e39e7feba3bdad" @@ -3563,6 +3920,11 @@ autoprefixer@^9.8.6: postcss "^7.0.32" postcss-value-parser "^4.1.0" +available-typed-arrays@^1.0.5: + version "1.0.5" + resolved "https://registry.yarnpkg.com/available-typed-arrays/-/available-typed-arrays-1.0.5.tgz#92f95616501069d07d10edb2fc37d3e1c65123b7" + 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"^3.3.2" + schema-utils "^4.0.0" babel-plugin-dynamic-import-node@^2.3.3: version "2.3.3" @@ -3728,6 +4088,11 @@ bail@^1.0.0: resolved "https://registry.yarnpkg.com/bail/-/bail-1.0.5.tgz#b6fa133404a392cbc1f8c4bf63f5953351e7a776" integrity sha512-xFbRxM1tahm08yHBP16MMjVUAvDaBMD38zsM9EMAUN61omwLmKlOpB/Zku5QkjZ8TZ4vn53pj+t518cH0S03RQ== +bail@^2.0.0: + version "2.0.2" + resolved "https://registry.yarnpkg.com/bail/-/bail-2.0.2.tgz#d26f5cd8fe5d6f832a31517b9f7c356040ba6d5d" + integrity sha512-0xO6mYd7JB2YesxDKplafRpsiOzPt9V02ddPCLbY1xYGPOX24NTyN50qnUxgCPcSoYMhKpAuBTjQoRZCAkUDRw== + balanced-match@^1.0.0: version "1.0.2" resolved "https://registry.yarnpkg.com/balanced-match/-/balanced-match-1.0.2.tgz#e83e3a7e3f300b34cb9d87f615fa0cbf357690ee" @@ -3738,6 +4103,11 @@ balanced-match@^2.0.0: resolved "https://registry.yarnpkg.com/balanced-match/-/balanced-match-2.0.0.tgz#dc70f920d78db8b858535795867bf48f820633d9" integrity 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browserslist@^4.14.5, browserslist@^4.16.6, browserslist@^4.17.5, browserslist@^4.17.6, browserslist@^4.20.2, browserslist@^4.20.3: version "4.20.4" resolved "https://registry.yarnpkg.com/browserslist/-/browserslist-4.20.4.tgz#98096c9042af689ee1e0271333dbc564b8ce4477" integrity sha512-ok1d+1WpnU24XYN7oC3QWgTyMhY/avPJ/r9T00xxvUOIparA/gc+UPUMaod3i+G6s+nI2nUb9xZ5k794uIwShw== @@ -3815,17 +4185,6 @@ browserslist@^4.0.0, browserslist@^4.12.0, browserslist@^4.14.5, browserslist@^4 node-releases "^2.0.5" picocolors "^1.0.0" -browserslist@^4.16.6: - version "4.16.6" - resolved "https://registry.yarnpkg.com/browserslist/-/browserslist-4.16.6.tgz#d7901277a5a88e554ed305b183ec9b0c08f66fa2" - integrity sha512-Wspk/PqO+4W9qp5iUTJsa1B/QrYn1keNCcEP5OvP7WBwT4KaDly0uONYmC6Xa3Z5IqnUgS0KcgLYu1l74x0ZXQ== - dependencies: - caniuse-lite "^1.0.30001219" - colorette "^1.2.2" - electron-to-chromium "^1.3.723" - escalade "^3.1.1" - node-releases "^1.1.71" - bser@2.1.1: version "2.1.1" resolved "https://registry.yarnpkg.com/bser/-/bser-2.1.1.tgz#e6787da20ece9d07998533cfd9de6f5c38f4bc05" @@ -3838,6 +4197,13 @@ buffer-from@^1.0.0: resolved "https://registry.yarnpkg.com/buffer-from/-/buffer-from-1.1.2.tgz#2b146a6fd72e80b4f55d255f35ed59a3a9a41bd5" integrity sha512-E+XQCRwSbaaiChtv6k6Dwgc+bx+Bs6vuKJHHl5kox/BaKbhiXzqQOwK4cO22yElGp2OCmjwVhT3HmxgyPGnJfQ== +busboy@^1.6.0: + version "1.6.0" + resolved "https://registry.yarnpkg.com/busboy/-/busboy-1.6.0.tgz#966ea36a9502e43cdb9146962523b92f531f6893" + integrity sha512-8SFQbg/0hQ9xy3UNTB0YEnsNBbWfhf7RtnzpL7TkBiTBRfrQ9Fxcnz7VJsleJpyp6rVLvXiuORqjlHi5q+PYuA== + dependencies: + streamsearch "^1.1.0" + cacache@^15.0.5: version "15.2.0" resolved "https://registry.yarnpkg.com/cacache/-/cacache-15.2.0.tgz#73af75f77c58e72d8c630a7a2858cb18ef523389" @@ -3918,20 +4284,15 @@ caniuse-api@^3.0.0: lodash.memoize "^4.1.2" lodash.uniq "^4.5.0" -caniuse-lite@^1.0.0, caniuse-lite@^1.0.30001109: - version "1.0.30001355" - resolved 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character-reference-invalid@^1.0.0: version "1.1.4" resolved "https://registry.yarnpkg.com/character-reference-invalid/-/character-reference-invalid-1.1.4.tgz#083329cda0eae272ab3dbbf37e9a382c13af1560" @@ -4018,6 +4384,11 @@ cjs-module-lexer@^1.0.0: resolved "https://registry.yarnpkg.com/cjs-module-lexer/-/cjs-module-lexer-1.2.2.tgz#9f84ba3244a512f3a54e5277e8eef4c489864e40" integrity sha512-cOU9usZw8/dXIXKtwa8pM0OTJQuJkxMN6w30csNRUerHfeQ5R6U3kkU/FtJeIf3M202OHfY2U8ccInBG7/xogA== +classcat@^5.0.3: + version "5.0.4" + resolved "https://registry.yarnpkg.com/classcat/-/classcat-5.0.4.tgz#e12d1dfe6df6427f260f03b80dc63571a5107ba6" + integrity sha512-sbpkOw6z413p+HDGcBENe498WM9woqWHiJxCq7nvmxe9WmrUmqfAcxpIwAiMtM5Q3AhYkzXcNQHqsWq0mND51g== + classnames@^2.3.1: version "2.3.1" resolved "https://registry.yarnpkg.com/classnames/-/classnames-2.3.1.tgz#dfcfa3891e306ec1dad105d0e88f4417b8535e8e" @@ -4108,17 +4479,33 @@ color-name@1.1.3: resolved 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sha512-1rXeuUUiGGrykh+CeBdu5Ie7OJwinCgQY0bc7GCRxy5xVHy+moaqkpL/jqQq0MtQOeYcrqEz4abc5f0KtU7W4A== + dependencies: + color-convert "^2.0.1" + color-string "^1.9.0" + colord@^2.9.1: version "2.9.2" resolved "https://registry.yarnpkg.com/colord/-/colord-2.9.2.tgz#25e2bacbbaa65991422c07ea209e2089428effb1" integrity sha512-Uqbg+J445nc1TKn4FoDPS6ZZqAvEDnwrH42yo8B40JSOgSLxMZ/gt3h4nmCtPLQeXhjJJkqBx7SCY35WnIixaQ== -colorette@^1.2.0, colorette@^1.2.2: +colorette@^1.2.0: version "1.2.2" resolved "https://registry.yarnpkg.com/colorette/-/colorette-1.2.2.tgz#cbcc79d5e99caea2dbf10eb3a26fd8b3e6acfa94" integrity sha512-MKGMzyfeuutC/ZJ1cba9NqcNpfeqMUcYmyF1ZFY6/Cn7CNSAKx6a+s48sqLqyAiZuaP2TcqMhoo+dlwFnVxT9w== @@ -4135,6 +4522,11 @@ combined-stream@^1.0.8: dependencies: delayed-stream "~1.0.0" +comma-separated-tokens@^2.0.0: + version "2.0.3" + resolved "https://registry.yarnpkg.com/comma-separated-tokens/-/comma-separated-tokens-2.0.3.tgz#4e89c9458acb61bc8fef19f4529973b2392839ee" + integrity sha512-Fu4hJdvzeylCfQPp9SGWidpzrMs7tTrlu6Vb8XGaRGck8QSNZJJp538Wrb60Lax4fPwR64ViY468OIUTbRlGZg== + commander@2, commander@^2.20.0: version "2.20.3" resolved "https://registry.yarnpkg.com/commander/-/commander-2.20.3.tgz#fd485e84c03eb4881c20722ba48035e8531aeb33" @@ -4158,7 +4550,7 @@ compute-scroll-into-view@1.0.14: concat-map@0.0.1: version "0.0.1" resolved "https://registry.yarnpkg.com/concat-map/-/concat-map-0.0.1.tgz#d8a96bd77fd68df7793a73036a3ba0d5405d477b" - integrity sha1-2Klr13/Wjfd5OnMDajug1UBdR3s= + integrity sha512-/Srv4dswyQNBfohGpz9o6Yb3Gz3SrUDqBH5rTuhGR7ahtlbYKnVxw2bCFMRljaA7EXHaXZ8wsHdodFvbkhKmqg== confusing-browser-globals@^1.0.10: version "1.0.10" @@ -4250,6 +4642,13 @@ cosmiconfig@^7.0.0: path-type "^4.0.0" yaml "^1.10.0" +cross-fetch@^3.1.5: + version "3.1.5" + resolved "https://registry.yarnpkg.com/cross-fetch/-/cross-fetch-3.1.5.tgz#e1389f44d9e7ba767907f7af8454787952ab534f" + integrity sha512-lvb1SBsI0Z7GDwmuid+mU3kWVBwTVUbe7S0H52yaaAdQOXq2YktTCZdlAcNKFzE6QtRz0snpw9bNiPeOIkkQvw== + dependencies: + node-fetch "2.6.7" + cross-spawn@^7.0.2, cross-spawn@^7.0.3: version "7.0.3" resolved "https://registry.yarnpkg.com/cross-spawn/-/cross-spawn-7.0.3.tgz#f73a85b9d5d41d045551c177e2882d4ac85728a6" @@ -4466,15 +4865,10 @@ d3-collection@1, d3-collection@^1.0.4: resolved "https://registry.yarnpkg.com/d3-collection/-/d3-collection-1.0.7.tgz#349bd2aa9977db071091c13144d5e4f16b5b310e" integrity sha512-ii0/r5f4sjKNTfh84Di+DpztYwqKhEyUlKoPrzUFfeSkWxjW49xU2QzO9qrPrNkpdI0XJkfzvmTu8V2Zylln6A== -d3-color@1: - version "1.4.1" - resolved "https://registry.yarnpkg.com/d3-color/-/d3-color-1.4.1.tgz#c52002bf8846ada4424d55d97982fef26eb3bc8a" - integrity sha512-p2sTHSLCJI2QKunbGb7ocOh7DgTAn8IrLx21QRc/BSnodXM4sv6aLQlnfpvehFMLZEfBc6g9pH9SWQccFYfJ9Q== - -"d3-color@1 - 2": - version "2.0.0" - resolved 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sha512-lx14ZPYkhNx0s/2HX5sLFUI3mbasHjSSpwO/KaaNACweVwxUruKyWVcb293wMv1RqTPZyZ8kSZ2NogUZNcLOFQ== +"d3-ease@1 - 3": + version "3.0.1" + resolved "https://registry.yarnpkg.com/d3-ease/-/d3-ease-3.0.1.tgz#9658ac38a2140d59d346160f1f6c30fda0bd12f4" + integrity sha512-wR/XK3D3XcLIZwpbvQwQ5fK+8Ykds1ip7A2Txe0yxncXSdq1L9skcG7blcedkOX+ZcgxGAmLX1FrRGbADwzi0w== + d3-fetch@1: version "1.2.0" resolved "https://registry.yarnpkg.com/d3-fetch/-/d3-fetch-1.2.0.tgz#15ce2ecfc41b092b1db50abd2c552c2316cf7fc7" @@ -4556,6 +4968,13 @@ d3-interpolate@1, d3-interpolate@^1.4.0: dependencies: d3-color "1" +"d3-interpolate@1 - 3": + version "3.0.1" + resolved "https://registry.yarnpkg.com/d3-interpolate/-/d3-interpolate-3.0.1.tgz#3c47aa5b32c5b3dfb56ef3fd4342078a632b400d" + integrity sha512-3bYs1rOD33uo8aqJfKP3JWPAibgw8Zm2+L9vBKEHJ2Rg+viTR7o5Mmv5mZcieN+FRYaAOWX5SJATX6k1PWz72g== + dependencies: + d3-color "1 - 3" + "d3-interpolate@1.2.0 - 2": version "2.0.1" resolved "https://registry.yarnpkg.com/d3-interpolate/-/d3-interpolate-2.0.1.tgz#98be499cfb8a3b94d4ff616900501a64abc91163" @@ -4624,6 +5043,11 @@ d3-selection@1, d3-selection@^1.1.0, d3-selection@^1.3.0: resolved "https://registry.yarnpkg.com/d3-selection/-/d3-selection-1.4.2.tgz#dcaa49522c0dbf32d6c1858afc26b6094555bc5c" integrity sha512-SJ0BqYihzOjDnnlfyeHT0e30k0K1+5sR3d5fNueCNeuhZTnGw4M4o8mqJchSwgKMXCNFo+e2VTChiSJ0vYtXkg== +"d3-selection@2 - 3", d3-selection@3, d3-selection@^3.0.0: + version "3.0.0" + resolved "https://registry.yarnpkg.com/d3-selection/-/d3-selection-3.0.0.tgz#c25338207efa72cc5b9bd1458a1a41901f1e1b31" + integrity sha512-fmTRWbNMmsmWq6xJV8D19U/gw/bwrHfNXxrIN+HfZgnzqTHp9jOmKMhsTUjXOJnZOdZY9Q28y4yebKzqDKlxlQ== + d3-shape@1, d3-shape@^1.0.6, d3-shape@^1.2.0: version "1.3.7" resolved "https://registry.yarnpkg.com/d3-shape/-/d3-shape-1.3.7.tgz#df63801be07bc986bc54f63789b4fe502992b5d7" @@ -4669,6 +5093,11 @@ d3-timer@1: resolved 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d3-dispatch "1 - 3" + d3-ease "1 - 3" + d3-interpolate "1 - 3" + d3-timer "1 - 3" + d3-voronoi@1: version "1.1.4" resolved "https://registry.yarnpkg.com/d3-voronoi/-/d3-voronoi-1.1.4.tgz#dd3c78d7653d2bb359284ae478645d95944c8297" @@ -4705,10 +5145,21 @@ d3-zoom@1: d3-selection "1" d3-transition "1" +d3-zoom@^3.0.0: + version "3.0.0" + resolved "https://registry.yarnpkg.com/d3-zoom/-/d3-zoom-3.0.0.tgz#d13f4165c73217ffeaa54295cd6969b3e7aee8f3" + integrity sha512-b8AmV3kfQaqWAuacbPuNbL6vahnOJflOhexLzMMNLga62+/nh0JzvJ0aO/5a5MVgUFGS7Hu1P9P03o3fJkDCyw== + dependencies: + d3-dispatch "1 - 3" + d3-drag "2 - 3" + d3-interpolate "1 - 3" + d3-selection "2 - 3" + d3-transition "2 - 3" + d3@^3.4.4: version "3.5.17" resolved "https://registry.yarnpkg.com/d3/-/d3-3.5.17.tgz#bc46748004378b21a360c9fc7cf5231790762fb8" - integrity sha1-vEZ0gAQ3iyGjYMn8fPUjF5B2L7g= + integrity sha512-yFk/2idb8OHPKkbAL8QaOaqENNoMhIaSHZerk3oQsECwkObkCpJyjYwCe+OHiq6UEdhe1m8ZGARRRO3ljFjlKg== d3@^5.14: version "5.16.0" @@ -4806,13 +5257,6 @@ debug@4: dependencies: ms "2.1.2" -debug@^2.6.9: - version "2.6.9" - resolved "https://registry.yarnpkg.com/debug/-/debug-2.6.9.tgz#5d128515df134ff327e90a4c93f4e077a536341f" - integrity sha512-bC7ElrdJaJnPbAP+1EotYvqZsb3ecl5wi6Bfi6BJTUcNowp6cvspg0jXznRTKDjm/E7AdgFBVeAPVMNcKGsHMA== - dependencies: - ms "2.0.0" - debug@^3.2.6, debug@^3.2.7: version "3.2.7" resolved "https://registry.yarnpkg.com/debug/-/debug-3.2.7.tgz#72580b7e9145fb39b6676f9c5e5fb100b934179a" @@ -4857,10 +5301,17 @@ decko@^1.2.0: resolved "https://registry.yarnpkg.com/decko/-/decko-1.2.0.tgz#fd43c735e967b8013306884a56fbe665996b6817" integrity sha1-/UPHNelnuAEzBohKVvvmZZlraBc= +decode-named-character-reference@^1.0.0: + version "1.0.2" + resolved "https://registry.yarnpkg.com/decode-named-character-reference/-/decode-named-character-reference-1.0.2.tgz#daabac9690874c394c81e4162a0304b35d824f0e" + integrity sha512-O8x12RzrUF8xyVcY0KJowWsmaJxQbmy0/EtnNtHRpsOcT7dFk5W598coHqBVpmWo1oQQfsCqfCmkZN5DJrZVdg== + dependencies: + character-entities "^2.0.0" + decode-uri-component@^0.2.0: - version "0.2.0" - resolved "https://registry.yarnpkg.com/decode-uri-component/-/decode-uri-component-0.2.0.tgz#eb3913333458775cb84cd1a1fae062106bb87545" - integrity sha1-6zkTMzRYd1y4TNGh+uBiEGu4dUU= + version "0.2.2" + resolved "https://registry.yarnpkg.com/decode-uri-component/-/decode-uri-component-0.2.2.tgz#e69dbe25d37941171dd540e024c444cd5188e1e9" + integrity sha512-FqUYQ+8o158GyGTrMFJms9qh3CqTKvAqgqsTnkLI8sKu0028orqBhxNMFkFen0zGyg6epACD32pjVk58ngIErQ== dedent@^0.7.0: version "0.7.0" @@ -4910,6 +5361,11 @@ delayed-stream@~1.0.0: resolved "https://registry.yarnpkg.com/delayed-stream/-/delayed-stream-1.0.0.tgz#df3ae199acadfb7d440aaae0b29e2272b24ec619" integrity sha1-3zrhmayt+31ECqrgsp4icrJOxhk= +dequal@^2.0.0: + version "2.0.3" + resolved "https://registry.yarnpkg.com/dequal/-/dequal-2.0.3.tgz#2644214f1997d39ed0ee0ece72335490a7ac67be" + integrity 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domhandler "^4.2.0" -electron-to-chromium@^1.3.723: - version "1.3.752" - resolved "https://registry.yarnpkg.com/electron-to-chromium/-/electron-to-chromium-1.3.752.tgz#0728587f1b9b970ec9ffad932496429aef750d09" - integrity sha512-2Tg+7jSl3oPxgsBsWKh5H83QazTkmWG/cnNwJplmyZc7KcN61+I10oUgaXSVk/NwfvN3BdkKDR4FYuRBQQ2v0A== - electron-to-chromium@^1.4.147: version "1.4.156" resolved "https://registry.yarnpkg.com/electron-to-chromium/-/electron-to-chromium-1.4.156.tgz#fc398e1bfbe586135351ebfaf198473a82923af5" @@ -5105,10 +5561,10 @@ emojis-list@^3.0.0: resolved "https://registry.yarnpkg.com/emojis-list/-/emojis-list-3.0.0.tgz#5570662046ad29e2e916e71aae260abdff4f6a78" integrity sha512-/kyM18EfinwXZbno9FyUGeFh87KC8HRQBQGildHZbEuRyWFOmv1U10o9BBp8XVZDVNNuQKyIGIu5ZYAAXJ0V2Q== -enhanced-resolve@^5.9.3: - version "5.9.3" - resolved "https://registry.yarnpkg.com/enhanced-resolve/-/enhanced-resolve-5.9.3.tgz#44a342c012cbc473254af5cc6ae20ebd0aae5d88" - integrity 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sha512-1HQ2M2sPtxwnvOvT1ZClHyQDiggdNjURWpY2we6aMKCQiUVxTmVs2UYPLIrD84sS+kMdUwfBSylbJPwNnBrnHQ== +es-set-tostringtag@^2.0.1: + version "2.0.1" + resolved "https://registry.yarnpkg.com/es-set-tostringtag/-/es-set-tostringtag-2.0.1.tgz#338d502f6f674301d710b80c8592de8a15f09cd8" + integrity sha512-g3OMbtlwY3QewlqAiMLI47KywjWZoEytKr8pf6iTC8uJq5bIAH52Z9pnQ8pVL6whrCto53JZDuUIsifGeLorTg== + dependencies: + get-intrinsic "^1.1.3" + has "^1.0.3" + has-tostringtag "^1.0.0" + es-shim-unscopables@^1.0.0: version "1.0.0" resolved "https://registry.yarnpkg.com/es-shim-unscopables/-/es-shim-unscopables-1.0.0.tgz#702e632193201e3edf8713635d083d378e510241" @@ -5247,6 +5752,11 @@ escape-string-regexp@^4.0.0: resolved "https://registry.yarnpkg.com/escape-string-regexp/-/escape-string-regexp-4.0.0.tgz#14ba83a5d373e3d311e5afca29cf5bfad965bf34" integrity sha512-TtpcNJ3XAzx3Gq8sWRzJaVajRs0uVxA2YAkdb1jm2YkPz4G6egUFAyA3n5vtEIZefPk5Wa4UXbKuS5fKkJWdgA== +escape-string-regexp@^5.0.0: + version "5.0.0" + resolved 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"^1.3.1" + array.prototype.flatmap "^1.3.1" + debug "^3.2.7" doctrine "^2.1.0" - eslint-import-resolver-node "^0.3.6" - eslint-module-utils "^2.7.3" + eslint-import-resolver-node "^0.3.7" + eslint-module-utils "^2.7.4" has "^1.0.3" - is-core-module "^2.8.1" + is-core-module "^2.11.0" is-glob "^4.0.3" minimatch "^3.1.2" - object.values "^1.1.5" - resolve "^1.22.0" + object.values "^1.1.6" + resolve "^1.22.1" + semver "^6.3.0" tsconfig-paths "^3.14.1" eslint-plugin-jsx-a11y@^6.5.0: @@ -5636,6 +6153,31 @@ fb-watchman@^2.0.0: dependencies: bser "2.1.1" +fbemitter@^3.0.0: + version "3.0.0" + resolved "https://registry.yarnpkg.com/fbemitter/-/fbemitter-3.0.0.tgz#00b2a1af5411254aab416cd75f9e6289bee4bff3" + integrity sha512-KWKaceCwKQU0+HPoop6gn4eOHk50bBv/VxjJtGMfwmJt3D29JpN4H4eisCtIPA+a8GVBam+ldMMpMjJUvpDyHw== + dependencies: + fbjs "^3.0.0" + +fbjs-css-vars@^1.0.0: + version "1.0.2" + resolved "https://registry.yarnpkg.com/fbjs-css-vars/-/fbjs-css-vars-1.0.2.tgz#216551136ae02fe255932c3ec8775f18e2c078b8" + integrity sha512-b2XGFAFdWZWg0phtAWLHCk836A1Xann+I+Dgd3Gk64MHKZO44FfoD1KxyvbSh0qZsIoXQGGlVztIY+oitJPpRQ== + +fbjs@^3.0.0, fbjs@^3.0.1: + version "3.0.4" + resolved "https://registry.yarnpkg.com/fbjs/-/fbjs-3.0.4.tgz#e1871c6bd3083bac71ff2da868ad5067d37716c6" + integrity sha512-ucV0tDODnGV3JCnnkmoszb5lf4bNpzjv80K41wd4k798Etq+UYD0y0TIfalLjZoKgjive6/adkRnszwapiDgBQ== + dependencies: + cross-fetch "^3.1.5" + fbjs-css-vars "^1.0.0" + loose-envify "^1.0.0" + object-assign "^4.1.0" + promise "^7.1.1" + setimmediate "^1.0.5" + ua-parser-js "^0.7.30" + file-entry-cache@^6.0.1: version "6.0.1" resolved "https://registry.yarnpkg.com/file-entry-cache/-/file-entry-cache-6.0.1.tgz#211b2dd9659cb0394b073e7323ac3c933d522027" @@ -5667,18 +6209,20 @@ find-cache-dir@^3.3.1: make-dir "^3.0.2" pkg-dir "^4.1.0" +find-cache-dir@^3.3.2: + version "3.3.2" + resolved "https://registry.yarnpkg.com/find-cache-dir/-/find-cache-dir-3.3.2.tgz#b30c5b6eff0730731aea9bbd9dbecbd80256d64b" + integrity sha512-wXZV5emFEjrridIgED11OoUKLxiYjAcqot/NJdAkOhlJ+vGzwhOAfcG5OX1jP+S0PcjEn8bdMJv+g2jwQ3Onig== + dependencies: + commondir "^1.0.1" + make-dir "^3.0.2" + pkg-dir "^4.1.0" + find-root@^1.1.0: version "1.1.0" resolved "https://registry.yarnpkg.com/find-root/-/find-root-1.1.0.tgz#abcfc8ba76f708c42a97b3d685b7e9450bfb9ce4" integrity sha512-NKfW6bec6GfKc0SGx1e07QZY9PE99u0Bft/0rzSD5k3sO/vwkVUpDUKVm5Gpp5Ue3YfShPFTX2070tDs5kB9Ng== -find-up@^2.1.0: - version "2.1.0" - resolved "https://registry.yarnpkg.com/find-up/-/find-up-2.1.0.tgz#45d1b7e506c717ddd482775a2b77920a3c0c57a7" - integrity sha1-RdG35QbHF93UgndaK3eSCjwMV6c= - dependencies: - locate-path "^2.0.0" - find-up@^4.0.0, find-up@^4.1.0: version "4.1.0" resolved "https://registry.yarnpkg.com/find-up/-/find-up-4.1.0.tgz#97afe7d6cdc0bc5928584b7c8d7b16e8a9aa5d19" @@ -5700,6 +6244,14 @@ flatted@^3.1.0: resolved "https://registry.yarnpkg.com/flatted/-/flatted-3.1.1.tgz#c4b489e80096d9df1dfc97c79871aea7c617c469" integrity sha512-zAoAQiudy+r5SvnSw3KJy5os/oRJYHzrzja/tBDqrZtNhUw8bt6y8OBzMWcjWr+8liV8Eb6yOhw8WZ7VFZ5ZzA== +flux@^4.0.1: + version "4.0.3" + resolved "https://registry.yarnpkg.com/flux/-/flux-4.0.3.tgz#573b504a24982c4768fdfb59d8d2ea5637d72ee7" + integrity sha512-yKAbrp7JhZhj6uiT1FTuVMlIAT1J4jqEyBpFApi1kxpGZCvacMVc/t1pMQyotqHhAgvoE3bNvAykhCo2CLjnYw== + dependencies: + fbemitter "^3.0.0" + fbjs "^3.0.1" + focus-lock@^0.11.2: version "0.11.2" resolved "https://registry.yarnpkg.com/focus-lock/-/focus-lock-0.11.2.tgz#aeef3caf1cea757797ac8afdebaec8fd9ab243ed" @@ -5712,6 +6264,13 @@ follow-redirects@^1.14.8: resolved "https://registry.yarnpkg.com/follow-redirects/-/follow-redirects-1.14.9.tgz#dd4ea157de7bfaf9ea9b3fbd85aa16951f78d8d7" integrity sha512-MQDfihBQYMcyy5dhRDJUHcw7lb2Pv/TuE6xP1vyraLukNDHKbDxDNaOE3NbCAdKQApno+GPRyo1YAp89yCjK4w== +for-each@^0.3.3: + version "0.3.3" + resolved "https://registry.yarnpkg.com/for-each/-/for-each-0.3.3.tgz#69b447e88a0a5d32c3e7084f3f1710034b21376e" + integrity sha512-jqYfLp7mo9vIyQf8ykW2v7A+2N4QjeCeI5+Dz9XraiO1ign81wjiH7Fb9vSOWvQfNtmSa4H2RoQTrrXivdUZmw== + dependencies: + is-callable "^1.1.3" + foreach@^2.0.4: version "2.0.5" resolved "https://registry.yarnpkg.com/foreach/-/foreach-2.0.5.tgz#0bee005018aeb260d0a3af3ae658dd0136ec1b99" @@ -5814,6 +6373,15 @@ get-intrinsic@^1.0.2, get-intrinsic@^1.1.0, get-intrinsic@^1.1.1: has "^1.0.3" has-symbols "^1.0.1" +get-intrinsic@^1.1.3, get-intrinsic@^1.2.0: + version "1.2.0" + resolved "https://registry.yarnpkg.com/get-intrinsic/-/get-intrinsic-1.2.0.tgz#7ad1dc0535f3a2904bba075772763e5051f6d05f" + integrity sha512-L049y6nFOuom5wGyRc3/gdTLO94dySVKRACj1RmJZBQXlbTMhtNIgkWkUHq+jYmZvKf14EW1EoJnnjbmoHij0Q== + dependencies: + function-bind "^1.1.1" + has "^1.0.3" + has-symbols "^1.0.3" + get-nonce@^1.0.0: version "1.0.1" resolved "https://registry.yarnpkg.com/get-nonce/-/get-nonce-1.0.1.tgz#fdf3f0278073820d2ce9426c18f07481b1e0cdf3" @@ -5920,6 +6488,13 @@ globals@^13.15.0: dependencies: type-fest "^0.20.2" +globalthis@^1.0.3: + version "1.0.3" + resolved "https://registry.yarnpkg.com/globalthis/-/globalthis-1.0.3.tgz#5852882a52b80dc301b0660273e1ed082f0b6ccf" + integrity sha512-sFdI5LyBiNTHjRd7cGPWapiHWMOXKyuBNX/cWJ3NfzrZQVa8GI/8cofCl74AOVqq9W5kNmguTIzJ/1s2gyI9wA== + dependencies: + define-properties "^1.1.3" + globalyzer@0.1.0: version "0.1.0" resolved "https://registry.yarnpkg.com/globalyzer/-/globalyzer-0.1.0.tgz#cb76da79555669a1519d5a8edf093afaa0bf1465" @@ -5965,17 +6540,14 @@ gonzales-pe@^4.3.0: dependencies: minimist "^1.2.5" -graceful-fs@^4.1.2: - version "4.2.6" - resolved "https://registry.yarnpkg.com/graceful-fs/-/graceful-fs-4.2.6.tgz#ff040b2b0853b23c3d31027523706f1885d76bee" - integrity sha512-nTnJ528pbqxYanhpDYsi4Rd8MAeaBA67+RZ10CM1m3bTAVFEDcd5AuA4a6W5YkGZ1iNXHzZz8T6TBKLeBuNriQ== - -graceful-fs@^4.2.4: - version "4.2.8" - resolved "https://registry.yarnpkg.com/graceful-fs/-/graceful-fs-4.2.8.tgz#e412b8d33f5e006593cbd3cee6df9f2cebbe802a" - integrity sha512-qkIilPUYcNhJpd33n0GBXTB1MMPp14TxEsEs0pTrsSVucApsYzW5V+Q8Qxhik6KU3evy+qkAAowTByymK0avdg== +gopd@^1.0.1: + version "1.0.1" + resolved "https://registry.yarnpkg.com/gopd/-/gopd-1.0.1.tgz#29ff76de69dac7489b7c0918a5788e56477c332c" + integrity sha512-d65bNlIadxvpb/A2abVdlqKqV563juRnZ1Wtk6s1sIR8uNsXR70xqIzVqxVf1eTqDunwT2MkczEeaezCKTZhwA== + dependencies: + get-intrinsic "^1.1.3" -graceful-fs@^4.2.9: +graceful-fs@^4.1.2, graceful-fs@^4.2.4, graceful-fs@^4.2.9: version "4.2.9" resolved "https://registry.yarnpkg.com/graceful-fs/-/graceful-fs-4.2.9.tgz#041b05df45755e587a24942279b9d113146e1c96" integrity sha512-NtNxqUcXgpW2iMrfqSfR73Glt39K+BLwWsPs94yR63v45T0Wbej7eRmL5cWfwEgqXnmjQp3zaJTshdRW/qC2ZQ== @@ -6019,6 +6591,11 @@ has-property-descriptors@^1.0.0: dependencies: get-intrinsic "^1.1.1" +has-proto@^1.0.1: + version "1.0.1" + resolved "https://registry.yarnpkg.com/has-proto/-/has-proto-1.0.1.tgz#1885c1305538958aff469fef37937c22795408e0" + integrity sha512-7qE+iP+O+bgF9clE5+UoBFzE65mlBiVj3tKCrlNQ0Ogwm0BjpT/gK4SlLYDMybDh5I3TCTKnPPa0oMG7JDYrhg== + has-symbols@^1.0.1, has-symbols@^1.0.2: version "1.0.2" resolved "https://registry.yarnpkg.com/has-symbols/-/has-symbols-1.0.2.tgz#165d3070c00309752a1236a479331e3ac56f1423" @@ -6043,6 +6620,11 @@ has@^1.0.3: dependencies: function-bind "^1.1.1" +hast-util-whitespace@^2.0.0: + version "2.0.0" + resolved "https://registry.yarnpkg.com/hast-util-whitespace/-/hast-util-whitespace-2.0.0.tgz#4fc1086467cc1ef5ba20673cb6b03cec3a970f1c" + integrity sha512-Pkw+xBHuV6xFeJprJe2BBEoDV+AvQySaz3pPDRUs5PNZEMQjpXJJueqrpcHIXxnWTcAGi/UOCgVShlkY6kLoqg== + hey-listen@^1.0.8: version "1.0.8" resolved "https://registry.yarnpkg.com/hey-listen/-/hey-listen-1.0.8.tgz#8e59561ff724908de1aa924ed6ecc84a56a9aa68" @@ -6237,6 +6819,11 @@ ini@^1.3.5: resolved "https://registry.yarnpkg.com/ini/-/ini-1.3.8.tgz#a29da425b48806f34767a4efce397269af28432c" integrity sha512-JV/yugV2uzW5iMRSiZAyDtQd+nxtUnjeLt0acNdw98kKLrvuRVyB80tsREOE7yvGVgalhZ6RNXCmEHkUKBKxew== +inline-style-parser@0.1.1: + version "0.1.1" + resolved "https://registry.yarnpkg.com/inline-style-parser/-/inline-style-parser-0.1.1.tgz#ec8a3b429274e9c0a1f1c4ffa9453a7fef72cea1" + integrity sha512-7NXolsK4CAS5+xvdj5OMMbI962hU/wvwoxk+LWR9Ek9bVtyuuYScDN6eS0rUm6TxApFpw7CX1o4uJzcd4AyD3Q== + internal-slot@^1.0.3: version "1.0.3" resolved "https://registry.yarnpkg.com/internal-slot/-/internal-slot-1.0.3.tgz#7347e307deeea2faac2ac6205d4bc7d34967f59c" @@ -6246,6 +6833,15 @@ internal-slot@^1.0.3: has "^1.0.3" side-channel "^1.0.4" +internal-slot@^1.0.5: + version "1.0.5" + resolved "https://registry.yarnpkg.com/internal-slot/-/internal-slot-1.0.5.tgz#f2a2ee21f668f8627a4667f309dc0f4fb6674986" + integrity sha512-Y+R5hJrzs52QCG2laLn4udYVnxsfny9CpOhNhUvk/SSSVyF6T27FzRbF0sroPidSu3X8oEAkOn2K804mjpt6UQ== + dependencies: + get-intrinsic "^1.2.0" + has "^1.0.3" + side-channel "^1.0.4" + internmap@^1.0.0: version "1.0.1" resolved "https://registry.yarnpkg.com/internmap/-/internmap-1.0.1.tgz#0017cc8a3b99605f0302f2b198d272e015e5df95" @@ -6276,11 +6872,25 @@ is-alphanumerical@^1.0.0: is-alphabetical "^1.0.0" is-decimal "^1.0.0" +is-array-buffer@^3.0.1, is-array-buffer@^3.0.2: + version "3.0.2" + resolved "https://registry.yarnpkg.com/is-array-buffer/-/is-array-buffer-3.0.2.tgz#f2653ced8412081638ecb0ebbd0c41c6e0aecbbe" + integrity sha512-y+FyyR/w8vfIRq4eQcM1EYgSTnmHXPqaF+IgzgraytCFq5Xh8lllDVmAZolPJiZttZLeFSINPYMaEJ7/vWUa1w== + dependencies: + call-bind "^1.0.2" + get-intrinsic "^1.2.0" + is-typed-array "^1.1.10" + is-arrayish@^0.2.1: version "0.2.1" resolved "https://registry.yarnpkg.com/is-arrayish/-/is-arrayish-0.2.1.tgz#77c99840527aa8ecb1a8ba697b80645a7a926a9d" integrity sha1-d8mYQFJ6qOyxqLppe4BkWnqSap0= +is-arrayish@^0.3.1: + version "0.3.2" + resolved "https://registry.yarnpkg.com/is-arrayish/-/is-arrayish-0.3.2.tgz#4574a2ae56f7ab206896fb431eaeed066fdf8f03" + integrity sha512-eVRqCvVlZbuw3GrM63ovNSNAeA1K16kaR/LRY/92w0zxQ5/1YzwblUX652i4Xs9RwAGjW9d9y6X88t8OaAJfWQ== + is-bigint@^1.0.1: version "1.0.2" resolved "https://registry.yarnpkg.com/is-bigint/-/is-bigint-1.0.2.tgz#ffb381442503235ad245ea89e45b3dbff040ee5a" @@ -6298,6 +6908,11 @@ is-buffer@^2.0.0: resolved "https://registry.yarnpkg.com/is-buffer/-/is-buffer-2.0.5.tgz#ebc252e400d22ff8d77fa09888821a24a658c191" integrity sha512-i2R6zNFDwgEHJyQUtJEk0XFi1i0dPFn/oqjK3/vPCcDeJvW5NQ83V8QbicfF1SupOaB0h8ntgBC2YiE7dfyctQ== +is-callable@^1.1.3, is-callable@^1.2.7: + version "1.2.7" + resolved "https://registry.yarnpkg.com/is-callable/-/is-callable-1.2.7.tgz#3bc2a85ea742d9e36205dcacdd72ca1fdc51b055" + integrity sha512-1BC0BVFhS/p0qtw6enp8e+8OD0UrK0oFLztSjNzhcKA3WDuJxxAPXzPuPtKkjEY9UUoEWlX/8fgKeu2S8i9JTA== + is-callable@^1.1.4, is-callable@^1.2.3: version "1.2.3" resolved "https://registry.yarnpkg.com/is-callable/-/is-callable-1.2.3.tgz#8b1e0500b73a1d76c70487636f368e519de8db8e" @@ -6308,6 +6923,13 @@ is-callable@^1.2.4: resolved "https://registry.yarnpkg.com/is-callable/-/is-callable-1.2.4.tgz#47301d58dd0259407865547853df6d61fe471945" integrity sha512-nsuwtxZfMX67Oryl9LCQ+upnC0Z0BgpwntpS89m1H/TLF0zNfzfLMV/9Wa/6MZsj0acpEjAO0KF1xT6ZdLl95w== +is-core-module@^2.11.0: + version "2.11.0" + resolved "https://registry.yarnpkg.com/is-core-module/-/is-core-module-2.11.0.tgz#ad4cb3e3863e814523c96f3f58d26cc570ff0144" + integrity sha512-RRjxlvLDkD1YJwDbroBHMb+cukurkDWNyHx7D3oNB5x9rb5ogcksMC5wHCadcXoo67gVr/+3GFySh3134zi6rw== + dependencies: + has "^1.0.3" + is-core-module@^2.2.0: version "2.4.0" resolved "https://registry.yarnpkg.com/is-core-module/-/is-core-module-2.4.0.tgz#8e9fc8e15027b011418026e98f0e6f4d86305cc1" @@ -6415,6 +7037,11 @@ is-plain-obj@^2.0.0: resolved "https://registry.yarnpkg.com/is-plain-obj/-/is-plain-obj-2.1.0.tgz#45e42e37fccf1f40da8e5f76ee21515840c09287" integrity sha512-YWnfyRwxL/+SsrWYfOpUtz5b3YD+nyfkHvjbcanzk8zgyO4ASD67uVMRt8k5bM4lLMDnXfriRhOpemw+NfT1eA== +is-plain-obj@^4.0.0: + version "4.1.0" + resolved "https://registry.yarnpkg.com/is-plain-obj/-/is-plain-obj-4.1.0.tgz#d65025edec3657ce032fd7db63c97883eaed71f0" + integrity sha512-+Pgi+vMuUNkJyExiMBt5IlFoMyKnr5zhJ4Uspz58WOhBF5QoIZkFyNHIbBAtHwzVAgk5RtndVNsDRN61/mmDqg== + is-plain-object@^2.0.4: version "2.0.4" resolved "https://registry.yarnpkg.com/is-plain-object/-/is-plain-object-2.0.4.tgz#2c163b3fafb1b606d9d17928f05c2a1c38e07677" @@ -6479,6 +7106,17 @@ is-symbol@^1.0.2, is-symbol@^1.0.3: dependencies: has-symbols "^1.0.2" +is-typed-array@^1.1.10, is-typed-array@^1.1.9: + version "1.1.10" + resolved "https://registry.yarnpkg.com/is-typed-array/-/is-typed-array-1.1.10.tgz#36a5b5cb4189b575d1a3e4b08536bfb485801e3f" + integrity 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"^2.0.1" +minimatch@~3.0.2: + version "3.0.8" + resolved "https://registry.yarnpkg.com/minimatch/-/minimatch-3.0.8.tgz#5e6a59bd11e2ab0de1cfb843eb2d82e546c321c1" + integrity sha512-6FsRAQsxQ61mw+qP1ZzbL9Bc78x2p5OqNgNpnoAFLTrX8n5Kxph0CsnhmKKNXTWjXqU5L0pGPR7hYk+XWZr60Q== + dependencies: + brace-expansion "^1.1.7" + minimist-options@4.1.0: version "4.1.0" resolved "https://registry.yarnpkg.com/minimist-options/-/minimist-options-4.1.0.tgz#c0655713c53a8a2ebd77ffa247d342c40f010619" @@ -7599,16 +8623,11 @@ minimist-options@4.1.0: is-plain-obj "^1.1.0" kind-of "^6.0.3" -minimist@^1.2.0: +minimist@^1.2.0, minimist@^1.2.5, minimist@^1.2.6: version "1.2.7" resolved "https://registry.yarnpkg.com/minimist/-/minimist-1.2.7.tgz#daa1c4d91f507390437c6a8bc01078e7000c4d18" integrity sha512-bzfL1YUZsP41gmu/qjrEk0Q6i2ix/cVeAhbCbqH9u3zYutS1cLg00qhrD0M2MVdCcx4Sc0UpP2eBWo9rotpq6g== -minimist@^1.2.5, minimist@^1.2.6: - version "1.2.6" - resolved "https://registry.yarnpkg.com/minimist/-/minimist-1.2.6.tgz#8637a5b759ea0d6e98702cfb3a9283323c93af44" - integrity sha512-Jsjnk4bw3YJqYzbdyBiNsPWHPfO++UGG749Cxs6peCu5Xg4nrena6OVxOYxrQTqww0Jmwt+Ref8rggumkTLz9Q== - minipass-collect@^1.0.2: version "1.0.2" resolved "https://registry.yarnpkg.com/minipass-collect/-/minipass-collect-1.0.2.tgz#22b813bf745dc6edba2576b940022ad6edc8c617" @@ -7676,22 +8695,22 @@ moment-timezone@^0.4.0: dependencies: moment ">= 2.6.0" -moment-timezone@^0.5.35: - version "0.5.35" - resolved "https://registry.yarnpkg.com/moment-timezone/-/moment-timezone-0.5.35.tgz#6fa2631bdbe8ff04f6b8753f7199516be6dc9839" - integrity sha512-cY/pBOEXepQvlgli06ttCTKcIf8cD1nmNwOKQQAdHBqYApQSpAqotBMX0RJZNgMp6i0PlZuf1mFtnlyEkwyvFw== +moment-timezone@^0.5.43: + version "0.5.43" + resolved "https://registry.yarnpkg.com/moment-timezone/-/moment-timezone-0.5.43.tgz#3dd7f3d0c67f78c23cd1906b9b2137a09b3c4790" + integrity sha512-72j3aNyuIsDxdF1i7CEgV2FfxM1r6aaqJyLB2vwb33mXYyoyLly+F1zbWqhA3/bVIoJ4szlUoMbUnVdid32NUQ== dependencies: - moment ">= 2.9.0" + moment "^2.29.4" -"moment@>= 2.6.0", "moment@>= 2.9.0", moment@^2.10, moment@^2.29.4: +"moment@>= 2.6.0", moment@^2.10, moment@^2.29.4: version "2.29.4" resolved "https://registry.yarnpkg.com/moment/-/moment-2.29.4.tgz#3dbe052889fe7c1b2ed966fcb3a77328964ef108" integrity sha512-5LC9SOxjSc2HF6vO2CyuTDNivEdoz2IvyJJGj6X8DJ0eFyfszE0QiEd+iXmBvUP3WHxSjFH/vIsA0EN00cgr8w== -ms@2.0.0: - version "2.0.0" - resolved "https://registry.yarnpkg.com/ms/-/ms-2.0.0.tgz#5608aeadfc00be6c2901df5f9861788de0d597c8" - integrity sha1-VgiurfwAvmwpAd9fmGF4jeDVl8g= +mri@^1.1.0: + version "1.2.0" + resolved "https://registry.yarnpkg.com/mri/-/mri-1.2.0.tgz#6721480fec2a11a4889861115a48b6cbe7cc8f0b" + integrity sha512-tzzskb3bG8LvYGFF/mDTpq3jpI6Q9wc3LEmBaghu+DdCssd1FakN7Bc0hVNmEyGq1bq3RgfkCb3cmQLpNPOroA== ms@2.1.2: version "2.1.2" @@ -7710,11 +8729,6 @@ nano-time@1.0.0: dependencies: big-integer "^1.6.16" -nanoid@^3.1.23: - version "3.3.2" - resolved "https://registry.yarnpkg.com/nanoid/-/nanoid-3.3.2.tgz#c89622fafb4381cd221421c69ec58547a1eec557" - integrity sha512-CuHBogktKwpm5g2sRgv83jEy2ijFzBwMoYA60orPDR7ynsLijJDqgsi4RDGj3OJpy3Ieb+LYwiRmIOGyytgITA== - nanoid@^3.3.4: version "3.3.4" resolved "https://registry.yarnpkg.com/nanoid/-/nanoid-3.3.4.tgz#730b67e3cd09e2deacf03c027c81c9d9dbc5e8ab" @@ -7756,7 +8770,7 @@ node-fetch-h2@^2.3.0: dependencies: http2-client "^1.2.5" -node-fetch@^2.6.1: +node-fetch@2.6.7, node-fetch@^2.6.1: version "2.6.7" resolved "https://registry.yarnpkg.com/node-fetch/-/node-fetch-2.6.7.tgz#24de9fba827e3b4ae44dc8b20256a379160052ad" integrity sha512-ZjMPFEfVx5j+y2yF35Kzx5sF7kDzxuDj6ziH4FFbOp87zKDZNx8yExJIb05OGF4Nlt9IHFIMBkRl41VdvcNdbQ== @@ -7780,11 +8794,6 @@ node-readfiles@^0.2.0: dependencies: es6-promise "^3.2.1" -node-releases@^1.1.71: - version "1.1.73" - resolved "https://registry.yarnpkg.com/node-releases/-/node-releases-1.1.73.tgz#dd4e81ddd5277ff846b80b52bb40c49edf7a7b20" - integrity sha512-uW7fodD6pyW2FZNZnp/Z3hvWKeEW1Y8R1+1CnErE8cXFXzl5blBOoVB41CvMer6P6Q0S5FXDwcHgFd1Wj0U9zg== - node-releases@^2.0.5: version "2.0.5" resolved "https://registry.yarnpkg.com/node-releases/-/node-releases-2.0.5.tgz#280ed5bc3eba0d96ce44897d8aee478bfb3d9666" @@ -7857,7 +8866,7 @@ num2fraction@^1.2.2: nvd3@^1.8.6: version "1.8.6" resolved "https://registry.yarnpkg.com/nvd3/-/nvd3-1.8.6.tgz#2d3eba74bf33363b5101ebf1d093c59a53ae73c4" - integrity sha1-LT66dL8zNjtRAevx0JPFmlOuc8Q= + integrity sha512-YGQ9hAQHuQCF0JmYkT2GhNMHb5pA+vDfQj6C2GdpQPzdRPj/srPG3mh/3fZzUFt+at1NusLk/RqICUWkxm4viQ== nwsapi@^2.2.0: version "2.2.0" @@ -7910,7 +8919,7 @@ oas-validator@^5.0.6: should "^13.2.1" yaml "^1.10.0" -object-assign@^4.0.1, object-assign@^4.1.1: +object-assign@^4.0.1, object-assign@^4.1.0, object-assign@^4.1.1: version "4.1.1" resolved "https://registry.yarnpkg.com/object-assign/-/object-assign-4.1.1.tgz#2109adc7965887cfc05cbbd442cac8bfbb360863" integrity sha512-rJgTQnkUnH1sFw8yT6VSU3zD3sWmu6sZhIseY8VX+GRu3P6F7Fu+JNDoXfklElbLJSnc3FUQHVe4cU5hj+BcUg== @@ -7925,6 +8934,11 @@ object-inspect@^1.12.0: resolved "https://registry.yarnpkg.com/object-inspect/-/object-inspect-1.12.2.tgz#c0641f26394532f28ab8d796ab954e43c009a8ea" integrity sha512-z+cPxW0QGUp0mcqcsgQyLVRDoXFQbXOwBaqyF7VIgI4TWNQsDHrBpUQslRmIfAoYWdYzs6UlKJtB2XJpTaNSpQ== +object-inspect@^1.12.3: + version "1.12.3" + resolved "https://registry.yarnpkg.com/object-inspect/-/object-inspect-1.12.3.tgz#ba62dffd67ee256c8c086dfae69e016cd1f198b9" + integrity sha512-geUvdk7c+eizMNUDkRpW1wJwgfOiOeHbxBR/hLXK1aT6zmVSO0jsQcs7fj6MGw89jC/cjGfLcNOrtMYtGqm81g== + object-inspect@^1.9.0: version "1.11.0" resolved "https://registry.yarnpkg.com/object-inspect/-/object-inspect-1.11.0.tgz#9dceb146cedd4148a0d9e51ab88d34cf509922b1" @@ -7945,6 +8959,16 @@ object.assign@^4.1.0, object.assign@^4.1.2: has-symbols "^1.0.1" object-keys "^1.1.1" +object.assign@^4.1.4: + version "4.1.4" + resolved "https://registry.yarnpkg.com/object.assign/-/object.assign-4.1.4.tgz#9673c7c7c351ab8c4d0b516f4343ebf4dfb7799f" + integrity sha512-1mxKf0e58bvyjSCtKYY4sRe9itRk3PJpquJOjeIkz885CczcI4IvJJDLPS72oowuSh+pBxUFROpX+TU++hxhZQ== + dependencies: + call-bind "^1.0.2" + define-properties "^1.1.4" + has-symbols "^1.0.3" + object-keys "^1.1.1" + object.entries@^1.1.5: version "1.1.5" resolved "https://registry.yarnpkg.com/object.entries/-/object.entries-1.1.5.tgz#e1acdd17c4de2cd96d5a08487cfb9db84d881861" @@ -7980,6 +9004,15 @@ object.values@^1.1.5: define-properties "^1.1.3" es-abstract "^1.19.1" +object.values@^1.1.6: + version "1.1.6" + resolved "https://registry.yarnpkg.com/object.values/-/object.values-1.1.6.tgz#4abbaa71eba47d63589d402856f908243eea9b1d" + integrity sha512-FVVTkD1vENCsAcwNs9k6jea2uHC/X0+JcjG8YA60FN5CMaJmG95wT9jek/xX9nornqGRrBkKtzuAu2wuHpKqvw== + dependencies: + call-bind "^1.0.2" + define-properties "^1.1.4" + es-abstract "^1.20.4" + oblivious-set@1.0.0: version "1.0.0" resolved "https://registry.yarnpkg.com/oblivious-set/-/oblivious-set-1.0.0.tgz#c8316f2c2fb6ff7b11b6158db3234c49f733c566" @@ -8043,13 +9076,6 @@ optionator@^0.9.1: type-check "^0.4.0" word-wrap "^1.2.3" -p-limit@^1.1.0: - version "1.3.0" - resolved "https://registry.yarnpkg.com/p-limit/-/p-limit-1.3.0.tgz#b86bd5f0c25690911c7590fcbfc2010d54b3ccb8" - integrity sha512-vvcXsLAJ9Dr5rQOPk7toZQZJApBl2K4J6dANSsEuh6QI41JYcsS/qhTGa9ErIUUgK3WNQoJYvylxvjqmiqEA9Q== - dependencies: - p-try "^1.0.0" - p-limit@^2.2.0: version "2.3.0" resolved "https://registry.yarnpkg.com/p-limit/-/p-limit-2.3.0.tgz#3dd33c647a214fdfffd835933eb086da0dc21db1" @@ -8064,13 +9090,6 @@ p-limit@^3.0.2: dependencies: yocto-queue "^0.1.0" -p-locate@^2.0.0: - version "2.0.0" - resolved "https://registry.yarnpkg.com/p-locate/-/p-locate-2.0.0.tgz#20a0103b222a70c8fd39cc2e580680f3dde5ec43" - integrity sha1-IKAQOyIqcMj9OcwuWAaA893l7EM= - dependencies: - p-limit "^1.1.0" - p-locate@^4.1.0: version "4.1.0" resolved "https://registry.yarnpkg.com/p-locate/-/p-locate-4.1.0.tgz#a3428bb7088b3a60292f66919278b7c297ad4f07" @@ -8090,11 +9109,6 @@ p-map@^4.0.0: dependencies: aggregate-error "^3.0.0" -p-try@^1.0.0: - version "1.0.0" - resolved "https://registry.yarnpkg.com/p-try/-/p-try-1.0.0.tgz#cbc79cdbaf8fd4228e13f621f2b1a237c1b207b3" - integrity sha1-y8ec26+P1CKOE/Yh8rGiN8GyB7M= - p-try@^2.0.0: version "2.2.0" resolved "https://registry.yarnpkg.com/p-try/-/p-try-2.2.0.tgz#cb2868540e313d61de58fafbe35ce9004d5540e6" @@ -8139,11 +9153,6 @@ path-browserify@^1.0.1: resolved "https://registry.yarnpkg.com/path-browserify/-/path-browserify-1.0.1.tgz#d98454a9c3753d5790860f16f68867b9e46be1fd" integrity sha512-b7uo2UCUOYZcnF/3ID0lulOJi/bafxa1xPe7ZPsammBSpjSWQkjNxlt635YGS2MiR9GjvuXCtz2emr3jbsz98g== -path-exists@^3.0.0: - version "3.0.0" - resolved "https://registry.yarnpkg.com/path-exists/-/path-exists-3.0.0.tgz#ce0ebeaa5f78cb18925ea7d810d7b59b010fd515" - integrity sha1-zg6+ql94yxiSXqfYENe1mwEP1RU= - path-exists@^4.0.0: version "4.0.0" resolved "https://registry.yarnpkg.com/path-exists/-/path-exists-4.0.0.tgz#513bdbe2d3b95d7762e8c1137efa195c6c61b5b3" @@ -8513,7 +9522,15 @@ postcss-scss@^2.1.1: dependencies: postcss "^7.0.6" -postcss-selector-parser@^6.0.2, postcss-selector-parser@^6.0.4, postcss-selector-parser@^6.0.5: +postcss-selector-parser@^6.0.2: + version "6.0.11" + resolved "https://registry.yarnpkg.com/postcss-selector-parser/-/postcss-selector-parser-6.0.11.tgz#2e41dc39b7ad74046e1615185185cd0b17d0c8dc" + integrity sha512-zbARubNdogI9j7WY4nQJBiNqQf3sLS3wCP4WfOidu+p28LofJqDH1tcXypGrcmMHhDk2t9wGhCsYe/+szLTy1g== + dependencies: + cssesc "^3.0.0" + util-deprecate "^1.0.2" + +postcss-selector-parser@^6.0.4, postcss-selector-parser@^6.0.5: version "6.0.6" resolved "https://registry.yarnpkg.com/postcss-selector-parser/-/postcss-selector-parser-6.0.6.tgz#2c5bba8174ac2f6981ab631a42ab0ee54af332ea" integrity sha512-9LXrvaaX3+mcv5xkg5kFwqSzSH1JIObIx51PrndZwlmznwXRfxMddDvo9gve3gVR8ZTKgoFDdWkbRFmEhT4PMg== @@ -8568,13 +9585,13 @@ postcss@^7.0.14, postcss@^7.0.2, postcss@^7.0.21, postcss@^7.0.26, postcss@^7.0. source-map "^0.6.1" postcss@^8.2.15: - version "8.3.4" - resolved "https://registry.yarnpkg.com/postcss/-/postcss-8.3.4.tgz#41ece1c43f2f7c74dc7d90144047ce052757b822" - integrity sha512-/tZY0PXExXXnNhKv3TOvZAOUYRyuqcCbBm2c17YMDK0PlVII3K7/LKdt3ScHL+hhouddjUWi+1sKDf9xXW+8YA== + version "8.4.20" + resolved "https://registry.yarnpkg.com/postcss/-/postcss-8.4.20.tgz#64c52f509644cecad8567e949f4081d98349dc56" + integrity sha512-6Q04AXR1212bXr5fh03u8aAwbLxAQNGQ/Q1LNa0VfOI06ZAlhPHtQvE4OIdpj4kLThXilalPnmDSOD65DcHt+g== dependencies: - colorette "^1.2.2" - nanoid "^3.1.23" - source-map-js "^0.6.2" + nanoid "^3.3.4" + picocolors "^1.0.0" + source-map-js "^1.0.2" postcss@^8.4.13: version "8.4.14" @@ -8600,6 +9617,11 @@ prettier@^2.6.2: resolved "https://registry.yarnpkg.com/prettier/-/prettier-2.7.1.tgz#e235806850d057f97bb08368a4f7d899f7760c64" integrity sha512-ujppO+MkdPqoVINuDFDRLClm7D78qbDt0/NR+wp5FqEZOoTNAjPHWj17QRhu7geIHJfcNhRk1XVQmF8Bp3ye+g== +prettier@^2.8.4: + version "2.8.4" + resolved "https://registry.yarnpkg.com/prettier/-/prettier-2.8.4.tgz#34dd2595629bfbb79d344ac4a91ff948694463c3" + integrity sha512-vIS4Rlc2FNh0BySk3Wkd6xmwxB0FpOndW5fisM5H8hsZSxU2VWVB5CWIkIjWvrHjIhxk2g3bfMKM87zNTrZddw== + pretty-format@^27.0.0, pretty-format@^27.0.2, pretty-format@^27.3.1: version "27.3.1" resolved "https://registry.yarnpkg.com/pretty-format/-/pretty-format-27.3.1.tgz#7e9486365ccdd4a502061fa761d3ab9ca1b78df5" @@ -8629,6 +9651,13 @@ promise-inflight@^1.0.1: resolved "https://registry.yarnpkg.com/promise-inflight/-/promise-inflight-1.0.1.tgz#98472870bf228132fcbdd868129bad12c3c029e3" integrity sha1-mEcocL8igTL8vdhoEputEsPAKeM= +promise@^7.1.1: + version "7.3.1" + resolved "https://registry.yarnpkg.com/promise/-/promise-7.3.1.tgz#064b72602b18f90f29192b8b1bc418ffd1ebd3bf" + integrity sha512-nolQXZ/4L+bP/UGlkfaIujX9BKxGwmQ9OT4mOt5yvy8iK1h3wqTEJCijzGANTCCl9nWjY41juyAn2K3Q1hLLTg== + dependencies: + asap "~2.0.3" + prompts@^2.0.1: version "2.4.2" resolved "https://registry.yarnpkg.com/prompts/-/prompts-2.4.2.tgz#7b57e73b3a48029ad10ebd44f74b01722a4cb069" @@ -8637,6 +9666,15 @@ prompts@^2.0.1: kleur "^3.0.3" sisteransi "^1.0.5" +prop-types@^15.0.0, prop-types@^15.5.10, prop-types@^15.6.0, prop-types@^15.6.2, prop-types@^15.7.2, prop-types@^15.8.1: + version "15.8.1" + resolved "https://registry.yarnpkg.com/prop-types/-/prop-types-15.8.1.tgz#67d87bf1a694f48435cf332c24af10214a3140b5" + integrity sha512-oj87CgZICdulUohogVAR7AjlC0327U4el4L6eAvOqCeudMDVU0NThNaV+b9Df4dXgSP1gXMTnPdhfe/2qDH5cg== + dependencies: + loose-envify "^1.4.0" + object-assign "^4.1.1" + react-is "^16.13.1" + prop-types@^15.5.0: version "15.7.2" resolved "https://registry.yarnpkg.com/prop-types/-/prop-types-15.7.2.tgz#52c41e75b8c87e72b9d9360e0206b99dcbffa6c5" @@ -8646,20 +9684,16 @@ prop-types@^15.5.0: object-assign "^4.1.1" react-is "^16.8.1" -prop-types@^15.5.10, prop-types@^15.6.0, prop-types@^15.6.2, prop-types@^15.7.2, prop-types@^15.8.1: - version "15.8.1" - resolved "https://registry.yarnpkg.com/prop-types/-/prop-types-15.8.1.tgz#67d87bf1a694f48435cf332c24af10214a3140b5" - integrity sha512-oj87CgZICdulUohogVAR7AjlC0327U4el4L6eAvOqCeudMDVU0NThNaV+b9Df4dXgSP1gXMTnPdhfe/2qDH5cg== - dependencies: - loose-envify "^1.4.0" - object-assign "^4.1.1" - react-is "^16.13.1" - propagate@^2.0.0: version "2.0.1" resolved "https://registry.yarnpkg.com/propagate/-/propagate-2.0.1.tgz#40cdedab18085c792334e64f0ac17256d38f9a45" integrity sha512-vGrhOavPSTz4QVNuBNdcNXePNdNMaO1xj9yBeH1ScQPjk/rhg9sSlCXPhMkFuaNNW/syTvYqsnbIJxMBfRbbag== +property-information@^6.0.0: + version "6.2.0" + resolved 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"^1.1.0" prop-types "^15.5.0" +react-textarea-autosize@^8.3.2, react-textarea-autosize@^8.3.4: + version "8.3.4" + resolved "https://registry.yarnpkg.com/react-textarea-autosize/-/react-textarea-autosize-8.3.4.tgz#270a343de7ad350534141b02c9cb78903e553524" + integrity sha512-CdtmP8Dc19xL8/R6sWvtknD/eCXkQr30dtvC4VmGInhRsfF8X/ihXCq6+9l9qbxmKRiq407/7z5fxE7cVWQNgQ== + dependencies: + "@babel/runtime" "^7.10.2" + use-composed-ref "^1.3.0" + use-latest "^1.2.1" + react-transition-group@^4.3.0: version "4.4.2" resolved "https://registry.yarnpkg.com/react-transition-group/-/react-transition-group-4.4.2.tgz#8b59a56f09ced7b55cbd53c36768b922890d5470" @@ -8834,6 +9933,17 @@ react@^18.0.0: dependencies: loose-envify "^1.1.0" +reactflow@^11.4.0: + version "11.4.0" + resolved "https://registry.yarnpkg.com/reactflow/-/reactflow-11.4.0.tgz#aeb4b030ba93e8e656094f59226e55ec538f55b4" + integrity sha512-Y+LZ3XZX7UejW4vukeyLwDDfqNT0RxyNNSHD1FJOIu2IvyVMkj+wKTcbp3ehm7brBkMOOaPyugcEWlLwFXcrjg== + dependencies: + "@reactflow/background" "11.1.0" + "@reactflow/controls" "11.1.0" + "@reactflow/core" "11.4.0" + "@reactflow/minimap" "11.3.0" + "@reactflow/node-toolbar" "1.1.0" + read-pkg-up@^7.0.1: version "7.0.1" resolved "https://registry.yarnpkg.com/read-pkg-up/-/read-pkg-up-7.0.1.tgz#f3a6135758459733ae2b95638056e1854e7ef507" @@ -8932,6 +10042,11 @@ regenerate@^1.4.2: resolved "https://registry.yarnpkg.com/regenerate/-/regenerate-1.4.2.tgz#b9346d8827e8f5a32f7ba29637d398b69014848a" integrity sha512-zrceR/XhGYU/d/opr2EKO7aRHUeiBI8qjtfHqADTwZd6Szfy16la6kqD0MIUs5z5hx6AaKa+PixpPrR289+I0A== +regenerator-runtime@^0.13.11: + version "0.13.11" + resolved "https://registry.yarnpkg.com/regenerator-runtime/-/regenerator-runtime-0.13.11.tgz#f6dca3e7ceec20590d07ada785636a90cdca17f9" + integrity sha512-kY1AZVr2Ra+t+piVaJ4gxaFaReZVH40AKNo7UCX6W+dEwBo/2oZJzqfuN1qLq1oL45o56cPaTXELwrTh8Fpggg== + regenerator-runtime@^0.13.4: version "0.13.9" resolved "https://registry.yarnpkg.com/regenerator-runtime/-/regenerator-runtime-0.13.9.tgz#8925742a98ffd90814988d7566ad30ca3b263b52" @@ -8982,6 +10097,25 @@ regjsparser@^0.7.0: dependencies: jsesc "~0.5.0" +remark-gfm@^3.0.1: + version "3.0.1" + resolved "https://registry.yarnpkg.com/remark-gfm/-/remark-gfm-3.0.1.tgz#0b180f095e3036545e9dddac0e8df3fa5cfee54f" + integrity sha512-lEFDoi2PICJyNrACFOfDD3JlLkuSbOa5Wd8EPt06HUdptv8Gn0bxYTdbU/XXQ3swAPkEaGxxPN9cbnMHvVu1Ig== + dependencies: + "@types/mdast" "^3.0.0" + mdast-util-gfm "^2.0.0" + micromark-extension-gfm "^2.0.0" + unified "^10.0.0" + +remark-parse@^10.0.0: + version "10.0.1" + resolved "https://registry.yarnpkg.com/remark-parse/-/remark-parse-10.0.1.tgz#6f60ae53edbf0cf38ea223fe643db64d112e0775" + integrity sha512-1fUyHr2jLsVOkhbvPRBJ5zTKZZyD6yZzYaWCS6BPBdQ8vEMBCH+9zNCDA6tET/zHCi/jLqjCWtlJZUPk+DbnFw== + dependencies: + "@types/mdast" "^3.0.0" + mdast-util-from-markdown "^1.0.0" + unified "^10.0.0" + remark-parse@^9.0.0: version "9.0.0" resolved "https://registry.yarnpkg.com/remark-parse/-/remark-parse-9.0.0.tgz#4d20a299665880e4f4af5d90b7c7b8a935853640" @@ -8989,6 +10123,16 @@ remark-parse@^9.0.0: dependencies: mdast-util-from-markdown "^0.8.0" +remark-rehype@^10.0.0: + version "10.1.0" + resolved "https://registry.yarnpkg.com/remark-rehype/-/remark-rehype-10.1.0.tgz#32dc99d2034c27ecaf2e0150d22a6dcccd9a6279" + integrity sha512-EFmR5zppdBp0WQeDVZ/b66CWJipB2q2VLNFMabzDSGR66Z2fQii83G5gTBbgGEnEEA0QRussvrFHxk1HWGJskw== + dependencies: + "@types/hast" "^2.0.0" + "@types/mdast" "^3.0.0" + mdast-util-to-hast "^12.1.0" + unified "^10.0.0" + remark-stringify@^9.0.0: version "9.0.1" resolved "https://registry.yarnpkg.com/remark-stringify/-/remark-stringify-9.0.1.tgz#576d06e910548b0a7191a71f27b33f1218862894" @@ -9055,7 +10199,16 @@ resolve@^1.10.0, resolve@^1.10.1, resolve@^1.12.0, resolve@^1.14.2, resolve@^1.2 is-core-module "^2.2.0" path-parse "^1.0.6" -resolve@^1.22.0, resolve@^1.9.0: +resolve@^1.22.1: + version "1.22.2" + 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"^6.0.0" -semver@^7.3.5, semver@^7.3.7: +semver@^7.3.5: + version "7.3.8" + resolved "https://registry.yarnpkg.com/semver/-/semver-7.3.8.tgz#07a78feafb3f7b32347d725e33de7e2a2df67798" + integrity sha512-NB1ctGL5rlHrPJtFDVIVzTyQylMLu9N9VICA6HSFJo8MCGVTMW6gfpicwKmmK/dAjTOrqu5l63JJOpDSrAis3A== + dependencies: + lru-cache "^6.0.0" + +semver@^7.3.7: version "7.3.7" resolved "https://registry.yarnpkg.com/semver/-/semver-7.3.7.tgz#12c5b649afdbf9049707796e22a4028814ce523f" integrity sha512-QlYTucUYOews+WeEujDoEGziz4K6c47V/Bd+LjSSYcA94p+DmINdf7ncaUinThfvZyu13lN9OY1XDxt8C0Tw0g== @@ -9217,6 +10384,11 @@ serialize-javascript@^6.0.0: dependencies: randombytes "^2.1.0" +setimmediate@^1.0.5: + version "1.0.5" + resolved "https://registry.yarnpkg.com/setimmediate/-/setimmediate-1.0.5.tgz#290cbb232e306942d7d7ea9b83732ab7856f8285" + integrity sha512-MATJdZp8sLqDl/68LfQmbP8zKPLQNV6BIZoIgrscFDQ+RsvK/BxeDQOgyxKKoh0y/8h3BqVFnCqQ/gd+reiIXA== + shallow-clone@^3.0.0: version "3.0.1" resolved "https://registry.yarnpkg.com/shallow-clone/-/shallow-clone-3.0.1.tgz#8f2981ad92531f55035b01fb230769a40e02efa3" @@ -9299,6 +10471,13 @@ signal-exit@^3.0.3: resolved "https://registry.yarnpkg.com/signal-exit/-/signal-exit-3.0.5.tgz#9e3e8cc0c75a99472b44321033a7702e7738252f" integrity sha512-KWcOiKeQj6ZyXx7zq4YxSMgHRlod4czeBQZrPb8OKcohcqAXShm7E20kEMle9WBt26hFcAf0qLOcp5zmY7kOqQ== +simple-swizzle@^0.2.2: + version "0.2.2" + resolved "https://registry.yarnpkg.com/simple-swizzle/-/simple-swizzle-0.2.2.tgz#a4da6b635ffcccca33f70d17cb92592de95e557a" + integrity sha512-JA//kQgZtbuY83m+xT+tXJkmJncGMTFT+C+g2h2R9uxkYIrE2yy9sgmcLhCnw57/WSD+Eh3J97FPEDFnbXnDUg== + dependencies: + is-arrayish "^0.3.1" + sisteransi@^1.0.5: version "1.0.5" resolved "https://registry.yarnpkg.com/sisteransi/-/sisteransi-1.0.5.tgz#134d681297756437cc05ca01370d3a7a571075ed" @@ -9328,11 +10507,6 @@ source-list-map@^2.0.0, source-list-map@^2.0.1: resolved 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"https://registry.yarnpkg.com/space-separated-tokens/-/space-separated-tokens-2.0.2.tgz#1ecd9d2350a3844572c3f4a312bceb018348859f" + integrity sha512-PEGlAwrG8yXGXRjW32fGbg66JAlOAwbObuqVoJpv/mRgoWDQfgH1wDPvtzWyUSNAXBGSk8h755YDbbcEy3SH2Q== + spdx-correct@^3.0.0: version "3.1.1" resolved "https://registry.yarnpkg.com/spdx-correct/-/spdx-correct-3.1.1.tgz#dece81ac9c1e6713e5f7d1b6f17d468fa53d89a9" @@ -9436,6 +10615,11 @@ stickyfill@^1.1.1: resolved "https://registry.yarnpkg.com/stickyfill/-/stickyfill-1.1.1.tgz#39413fee9d025c74a7e59ceecb23784cc0f17f02" integrity sha1-OUE/7p0CXHSn5ZzuyyN4TMDxfwI= +streamsearch@^1.1.0: + version "1.1.0" + resolved "https://registry.yarnpkg.com/streamsearch/-/streamsearch-1.1.0.tgz#404dd1e2247ca94af554e841a8ef0eaa238da764" + integrity sha512-Mcc5wHehp9aXz1ax6bZUyY5afg9u2rv5cqQI3mRrYkGC8rW2hM02jWuwjtL++LS5qinSyhj2QfLyNsuc+VsExg== + string-length@^4.0.1: version "4.0.2" resolved "https://registry.yarnpkg.com/string-length/-/string-length-4.0.2.tgz#a8a8dc7bd5c1a82b9b3c8b87e125f66871b6e57a" @@ -9476,6 +10660,15 @@ string.prototype.matchall@^4.0.7: regexp.prototype.flags "^1.4.1" side-channel "^1.0.4" +string.prototype.trim@^1.2.7: + version "1.2.7" + resolved "https://registry.yarnpkg.com/string.prototype.trim/-/string.prototype.trim-1.2.7.tgz#a68352740859f6893f14ce3ef1bb3037f7a90533" + integrity sha512-p6TmeT1T3411M8Cgg9wBTMRtY2q9+PNy9EV1i2lIXUN/btt763oIfxwN3RR8VU6wHX8j/1CFy0L+YuThm6bgOg== + dependencies: + call-bind "^1.0.2" + define-properties "^1.1.4" + es-abstract "^1.20.4" + string.prototype.trimend@^1.0.4: version "1.0.4" resolved "https://registry.yarnpkg.com/string.prototype.trimend/-/string.prototype.trimend-1.0.4.tgz#e75ae90c2942c63504686c18b287b4a0b1a45f80" @@ -9493,6 +10686,15 @@ string.prototype.trimend@^1.0.5: define-properties "^1.1.4" es-abstract "^1.19.5" +string.prototype.trimend@^1.0.6: + version "1.0.6" + resolved "https://registry.yarnpkg.com/string.prototype.trimend/-/string.prototype.trimend-1.0.6.tgz#c4a27fa026d979d79c04f17397f250a462944533" + integrity sha512-JySq+4mrPf9EsDBEDYMOb/lM7XQLulwg5R/m1r0PXEFqrV0qHvl58sdTilSXtKOflCsK2E8jxf+GKC0T07RWwQ== + dependencies: + call-bind "^1.0.2" + define-properties "^1.1.4" + es-abstract "^1.20.4" + string.prototype.trimstart@^1.0.4: version "1.0.4" resolved "https://registry.yarnpkg.com/string.prototype.trimstart/-/string.prototype.trimstart-1.0.4.tgz#b36399af4ab2999b4c9c648bd7a3fb2bb26feeed" @@ -9510,6 +10712,15 @@ string.prototype.trimstart@^1.0.5: define-properties "^1.1.4" es-abstract "^1.19.5" +string.prototype.trimstart@^1.0.6: + version "1.0.6" + resolved "https://registry.yarnpkg.com/string.prototype.trimstart/-/string.prototype.trimstart-1.0.6.tgz#e90ab66aa8e4007d92ef591bbf3cd422c56bdcf4" + integrity sha512-omqjMDaY92pbn5HOX7f9IccLA+U1tA9GvtU4JrodiXFfYB7jPzzHpRzpglLAjtUV6bB557zwClJezTqnAiYnQA== + dependencies: + call-bind "^1.0.2" + define-properties "^1.1.4" + es-abstract "^1.20.4" + string_decoder@^1.1.1: version "1.3.0" resolved "https://registry.yarnpkg.com/string_decoder/-/string_decoder-1.3.0.tgz#42f114594a46cf1a8e30b0a84f56c78c3edac21e" @@ -9591,6 +10802,13 @@ style-search@^0.1.0: resolved "https://registry.yarnpkg.com/style-search/-/style-search-0.1.0.tgz#7958c793e47e32e07d2b5cafe5c0bf8e12e77902" integrity sha1-eVjHk+R+MuB9K1yv5cC/jhLneQI= +style-to-object@^0.3.0: + version "0.3.0" + resolved "https://registry.yarnpkg.com/style-to-object/-/style-to-object-0.3.0.tgz#b1b790d205991cc783801967214979ee19a76e46" + integrity sha512-CzFnRRXhzWIdItT3OmF8SQfWyahHhjq3HwcMNCNLn+N7klOOqPjMeG/4JSu77D7ypZdGvSzvkrbyeTMizz2VrA== + dependencies: + inline-style-parser "0.1.1" + style-value-types@5.0.0: version "5.0.0" resolved "https://registry.yarnpkg.com/style-value-types/-/style-value-types-5.0.0.tgz#76c35f0e579843d523187989da866729411fc8ad" @@ -9607,6 +10825,11 @@ stylehacks@^5.1.0: browserslist "^4.16.6" postcss-selector-parser "^6.0.4" +stylelint-config-prettier@^9.0.5: + version "9.0.5" + resolved "https://registry.yarnpkg.com/stylelint-config-prettier/-/stylelint-config-prettier-9.0.5.tgz#9f78bbf31c7307ca2df2dd60f42c7014ee9da56e" + integrity sha512-U44lELgLZhbAD/xy/vncZ2Pq8sh2TnpiPvo38Ifg9+zeioR+LAkHu0i6YORIOxFafZoVg0xqQwex6e6F25S5XA== + stylelint-config-recommended@^3.0.0: version "3.0.0" resolved "https://registry.yarnpkg.com/stylelint-config-recommended/-/stylelint-config-recommended-3.0.0.tgz#e0e547434016c5539fe2650afd58049a2fd1d657" @@ -9742,6 +10965,11 @@ svgo@^2.7.0: picocolors "^1.0.0" stable "^0.1.8" +swagger-ui-dist@4.1.3: + version "4.1.3" + resolved "https://registry.yarnpkg.com/swagger-ui-dist/-/swagger-ui-dist-4.1.3.tgz#2be9f9de9b5c19132fa4a5e40933058c151563dc" + integrity sha512-WvfPSfAAMlE/sKS6YkW47nX/hA7StmhYnAHc6wWCXNL0oclwLj6UXv0hQCkLnDgvebi0MEV40SJJpVjKUgH1IQ== + swagger2openapi@^7.0.6: version "7.0.6" resolved "https://registry.yarnpkg.com/swagger2openapi/-/swagger2openapi-7.0.6.tgz#20a2835b8edfc0f4c08036b20cb51e8f78a420bf" @@ -9911,6 +11139,11 @@ tr46@~0.0.3: resolved "https://registry.yarnpkg.com/tr46/-/tr46-0.0.3.tgz#8184fd347dac9cdc185992f3a6622e14b9d9ab6a" integrity sha512-N3WMsuqV66lT30CrXNbEjx4GEwlow3v6rr4mCcv6prnfwhS01rkgyFdjPNBYd9br7LpXV1+Emh01fHnq2Gdgrw== +trim-lines@^3.0.0: + version "3.0.1" + resolved "https://registry.yarnpkg.com/trim-lines/-/trim-lines-3.0.1.tgz#d802e332a07df861c48802c04321017b1bd87338" + integrity sha512-kRj8B+YHZCc9kQYdWfJB2/oUl9rA99qbowYYBtr4ui4mZyAQ2JpvVBd/6U2YloATfqBhBTSMhTpgBHtU0Mf3Rg== + trim-newlines@^3.0.0: version "3.0.1" resolved "https://registry.yarnpkg.com/trim-newlines/-/trim-newlines-3.0.1.tgz#260a5d962d8b752425b32f3a7db0dcacd176c144" @@ -9921,13 +11154,18 @@ trough@^1.0.0: resolved "https://registry.yarnpkg.com/trough/-/trough-1.0.5.tgz#b8b639cefad7d0bb2abd37d433ff8293efa5f406" integrity sha512-rvuRbTarPXmMb79SmzEp8aqXNKcK+y0XaB298IXueQ8I2PsrATcPBCSPyK/dDNa2iWOhKlfNnOjdAOTBU/nkFA== -tsconfig-paths@^3.14.1: - version "3.14.1" - resolved "https://registry.yarnpkg.com/tsconfig-paths/-/tsconfig-paths-3.14.1.tgz#ba0734599e8ea36c862798e920bcf163277b137a" - integrity sha512-fxDhWnFSLt3VuTwtvJt5fpwxBHg5AdKWMsgcPOOIilyjymcYVZoCQF8fvFRezCNfblEXmi+PcM1eYHeOAgXCOQ== +trough@^2.0.0: + version "2.1.0" + resolved "https://registry.yarnpkg.com/trough/-/trough-2.1.0.tgz#0f7b511a4fde65a46f18477ab38849b22c554876" + integrity sha512-AqTiAOLcj85xS7vQ8QkAV41hPDIJ71XJB4RCUrzo/1GM2CQwhkJGaf9Hgr7BOugMRpgGUrqRg/DrBDl4H40+8g== + +tsconfig-paths@^3.14.1, tsconfig-paths@^3.14.2: + version "3.14.2" + resolved "https://registry.yarnpkg.com/tsconfig-paths/-/tsconfig-paths-3.14.2.tgz#6e32f1f79412decd261f92d633a9dc1cfa99f088" + integrity sha512-o/9iXgCYc5L/JxCHPe3Hvh8Q/2xm5Z+p18PESBU6Ff33695QnCHBEjcytY2q19ua7Mbl/DavtBOLq+oG0RCL+g== dependencies: "@types/json5" "^0.0.29" - json5 "^1.0.1" + json5 "^1.0.2" minimist "^1.2.6" strip-bom "^3.0.0" @@ -10007,6 +11245,15 @@ type-fest@^2.17.0: resolved "https://registry.yarnpkg.com/type-fest/-/type-fest-2.17.0.tgz#c677030ce61e5be0c90c077d52571eb73c506ea9" integrity sha512-U+g3/JVXnOki1kLSc+xZGPRll3Ah9u2VIG6Sn9iH9YX6UkPERmt6O/0fIyTgsd2/whV0+gAaHAg8fz6sG1QzMA== +typed-array-length@^1.0.4: + version "1.0.4" + resolved "https://registry.yarnpkg.com/typed-array-length/-/typed-array-length-1.0.4.tgz#89d83785e5c4098bec72e08b319651f0eac9c1bb" + integrity sha512-KjZypGq+I/H7HI5HlOoGHkWUUGq+Q0TPhQurLbyrVrvnKTBgzLhIJ7j6J/XTQOi0d1RjyZ0wdas8bKs2p0x3Ng== + dependencies: + call-bind "^1.0.2" + for-each "^0.3.3" + is-typed-array "^1.1.9" + typedarray-to-buffer@^3.1.5: version "3.1.5" resolved "https://registry.yarnpkg.com/typedarray-to-buffer/-/typedarray-to-buffer-3.1.5.tgz#a97ee7a9ff42691b9f783ff1bc5112fe3fca9080" @@ -10019,6 +11266,11 @@ typescript@^4.6.3: resolved "https://registry.yarnpkg.com/typescript/-/typescript-4.7.3.tgz#8364b502d5257b540f9de4c40be84c98e23a129d" integrity sha512-WOkT3XYvrpXx4vMMqlD+8R8R37fZkjyLGlxavMc4iB8lrl8L0DeTcHbYgw/v0N/z9wAFsgBhcsF0ruoySS22mA== +ua-parser-js@^0.7.30: + version "0.7.33" + resolved "https://registry.yarnpkg.com/ua-parser-js/-/ua-parser-js-0.7.33.tgz#1d04acb4ccef9293df6f70f2c3d22f3030d8b532" + integrity sha512-s8ax/CeZdK9R/56Sui0WM6y9OFREJarMRHqLB2EwkovemBxNQ+Bqu8GAsUnVcXKgphb++ghr/B2BZx4mahujPw== + unbox-primitive@^1.0.1: version "1.0.1" resolved "https://registry.yarnpkg.com/unbox-primitive/-/unbox-primitive-1.0.1.tgz#085e215625ec3162574dc8859abee78a59b14471" @@ -10040,9 +11292,11 @@ unbox-primitive@^1.0.2: which-boxed-primitive "^1.0.2" undici@^5.4.0: - version "5.9.1" - resolved "https://registry.yarnpkg.com/undici/-/undici-5.9.1.tgz#fc9fd85dd488f965f153314a63d9426a11f3360b" - integrity sha512-6fB3a+SNnWEm4CJbgo0/CWR8RGcOCQP68SF4X0mxtYTq2VNN8T88NYrWVBAeSX+zb7bny2dx2iYhP3XHi00omg== + version "5.19.1" + resolved "https://registry.yarnpkg.com/undici/-/undici-5.19.1.tgz#92b1fd3ab2c089b5a6bd3e579dcda8f1934ebf6d" + integrity sha512-YiZ61LPIgY73E7syxCDxxa3LV2yl3sN8spnIuTct60boiiRaE1J8mNWHO8Im2Zi/sFrPusjLlmRPrsyraSqX6A== + dependencies: + busboy "^1.6.0" unicode-canonical-property-names-ecmascript@^2.0.0: version "2.0.0" @@ -10067,6 +11321,19 @@ unicode-property-aliases-ecmascript@^2.0.0: resolved "https://registry.yarnpkg.com/unicode-property-aliases-ecmascript/-/unicode-property-aliases-ecmascript-2.0.0.tgz#0a36cb9a585c4f6abd51ad1deddb285c165297c8" integrity sha512-5Zfuy9q/DFr4tfO7ZPeVXb1aPoeQSdeFMLpYuFebehDAhbuevLs5yxSZmIFN1tP5F9Wl4IpJrYojg85/zgyZHQ== +unified@^10.0.0: + version "10.1.2" + resolved "https://registry.yarnpkg.com/unified/-/unified-10.1.2.tgz#b1d64e55dafe1f0b98bb6c719881103ecf6c86df" + integrity sha512-pUSWAi/RAnVy1Pif2kAoeWNBa3JVrx0MId2LASj8G+7AiHWoKZNTomq6LG326T68U7/e263X6fTdcXIy7XnF7Q== + dependencies: + "@types/unist" "^2.0.0" + bail "^2.0.0" + extend "^3.0.0" + is-buffer "^2.0.0" + is-plain-obj "^4.0.0" + trough "^2.0.0" + vfile "^5.0.0" + unified@^9.1.0: version "9.2.2" resolved "https://registry.yarnpkg.com/unified/-/unified-9.2.2.tgz#67649a1abfc3ab85d2969502902775eb03146975" @@ -10093,6 +11360,13 @@ unique-slug@^2.0.0: dependencies: imurmurhash "^0.1.4" +unist-builder@^3.0.0: + version "3.0.0" + resolved "https://registry.yarnpkg.com/unist-builder/-/unist-builder-3.0.0.tgz#728baca4767c0e784e1e64bb44b5a5a753021a04" + integrity sha512-GFxmfEAa0vi9i5sd0R2kcrI9ks0r82NasRq5QHh2ysGngrc6GiqD5CDf1FjPenY4vApmFASBIIlk/jj5J5YbmQ== + dependencies: + "@types/unist" "^2.0.0" + unist-util-find-all-after@^3.0.2: version "3.0.2" resolved "https://registry.yarnpkg.com/unist-util-find-all-after/-/unist-util-find-all-after-3.0.2.tgz#fdfecd14c5b7aea5e9ef38d5e0d5f774eeb561f6" @@ -10100,11 +11374,28 @@ unist-util-find-all-after@^3.0.2: dependencies: unist-util-is "^4.0.0" +unist-util-generated@^2.0.0: + version "2.0.0" + resolved "https://registry.yarnpkg.com/unist-util-generated/-/unist-util-generated-2.0.0.tgz#86fafb77eb6ce9bfa6b663c3f5ad4f8e56a60113" + integrity sha512-TiWE6DVtVe7Ye2QxOVW9kqybs6cZexNwTwSMVgkfjEReqy/xwGpAXb99OxktoWwmL+Z+Epb0Dn8/GNDYP1wnUw== + unist-util-is@^4.0.0: version "4.1.0" resolved "https://registry.yarnpkg.com/unist-util-is/-/unist-util-is-4.1.0.tgz#976e5f462a7a5de73d94b706bac1b90671b57797" integrity sha512-ZOQSsnce92GrxSqlnEEseX0gi7GH9zTJZ0p9dtu87WRb/37mMPO2Ilx1s/t9vBHrFhbgweUwb+t7cIn5dxPhZg== +unist-util-is@^5.0.0: + version "5.1.1" + resolved "https://registry.yarnpkg.com/unist-util-is/-/unist-util-is-5.1.1.tgz#e8aece0b102fa9bc097b0fef8f870c496d4a6236" + integrity sha512-F5CZ68eYzuSvJjGhCLPL3cYx45IxkqXSetCcRgUXtbcm50X2L9oOWQlfUfDdAf+6Pd27YDblBfdtmsThXmwpbQ== + +unist-util-position@^4.0.0: + version "4.0.3" + resolved "https://registry.yarnpkg.com/unist-util-position/-/unist-util-position-4.0.3.tgz#5290547b014f6222dff95c48d5c3c13a88fadd07" + integrity sha512-p/5EMGIa1qwbXjA+QgcBXaPWjSnZfQ2Sc3yBEEfgPwsEmJd8Qh+DSk3LGnmOM4S1bY2C0AjmMnB8RuEYxpPwXQ== + dependencies: + "@types/unist" "^2.0.0" + unist-util-stringify-position@^2.0.0: version "2.0.3" resolved "https://registry.yarnpkg.com/unist-util-stringify-position/-/unist-util-stringify-position-2.0.3.tgz#cce3bfa1cdf85ba7375d1d5b17bdc4cada9bd9da" @@ -10112,6 +11403,30 @@ unist-util-stringify-position@^2.0.0: dependencies: "@types/unist" "^2.0.2" +unist-util-stringify-position@^3.0.0: + version "3.0.2" + resolved "https://registry.yarnpkg.com/unist-util-stringify-position/-/unist-util-stringify-position-3.0.2.tgz#5c6aa07c90b1deffd9153be170dce628a869a447" + integrity sha512-7A6eiDCs9UtjcwZOcCpM4aPII3bAAGv13E96IkawkOAW0OhH+yRxtY0lzo8KiHpzEMfH7Q+FizUmwp8Iqy5EWg== + dependencies: + "@types/unist" "^2.0.0" + +unist-util-visit-parents@^5.0.0, unist-util-visit-parents@^5.1.1: + version "5.1.1" + resolved "https://registry.yarnpkg.com/unist-util-visit-parents/-/unist-util-visit-parents-5.1.1.tgz#868f353e6fce6bf8fa875b251b0f4fec3be709bb" + integrity sha512-gks4baapT/kNRaWxuGkl5BIhoanZo7sC/cUT/JToSRNL1dYoXRFl75d++NkjYk4TAu2uv2Px+l8guMajogeuiw== + dependencies: + "@types/unist" "^2.0.0" + unist-util-is "^5.0.0" + +unist-util-visit@^4.0.0: + version "4.1.1" + resolved "https://registry.yarnpkg.com/unist-util-visit/-/unist-util-visit-4.1.1.tgz#1c4842d70bd3df6cc545276f5164f933390a9aad" + integrity sha512-n9KN3WV9k4h1DxYR1LoajgN93wpEi/7ZplVe02IoB4gH5ctI1AaF2670BLHQYbwj+pY83gFtyeySFiyMHJklrg== + dependencies: + "@types/unist" "^2.0.0" + unist-util-is "^5.0.0" + unist-util-visit-parents "^5.1.1" + universalify@^0.1.2: version "0.1.2" resolved "https://registry.yarnpkg.com/universalify/-/universalify-0.1.2.tgz#b646f69be3942dabcecc9d6639c80dc105efaa66" @@ -10158,6 +11473,23 @@ use-callback-ref@^1.3.0: dependencies: tslib "^2.0.0" +use-composed-ref@^1.3.0: + version "1.3.0" + resolved "https://registry.yarnpkg.com/use-composed-ref/-/use-composed-ref-1.3.0.tgz#3d8104db34b7b264030a9d916c5e94fbe280dbda" + integrity sha512-GLMG0Jc/jiKov/3Ulid1wbv3r54K9HlMW29IWcDFPEqFkSO2nS0MuefWgMJpeHQ9YJeXDL3ZUF+P3jdXlZX/cQ== + +use-isomorphic-layout-effect@^1.1.1: + version "1.1.2" + resolved "https://registry.yarnpkg.com/use-isomorphic-layout-effect/-/use-isomorphic-layout-effect-1.1.2.tgz#497cefb13d863d687b08477d9e5a164ad8c1a6fb" + integrity sha512-49L8yCO3iGT/ZF9QttjwLF/ZD9Iwto5LnH5LmEdk/6cFmXddqi2ulF0edxTwjj+7mqvpVVGQWvbXZdn32wRSHA== + +use-latest@^1.2.1: + version "1.2.1" + resolved "https://registry.yarnpkg.com/use-latest/-/use-latest-1.2.1.tgz#d13dfb4b08c28e3e33991546a2cee53e14038cf2" + integrity sha512-xA+AVm/Wlg3e2P/JiItTziwS7FK92LWrDB0p+hgXloIMuVCeJJ8v6f0eeHyPZaJrM+usM1FkFfbNCrJGs8A/zw== + dependencies: + use-isomorphic-layout-effect "^1.1.1" + use-sidecar@^1.1.2: version "1.1.2" resolved "https://registry.yarnpkg.com/use-sidecar/-/use-sidecar-1.1.2.tgz#2f43126ba2d7d7e117aa5855e5d8f0276dfe73c2" @@ -10166,11 +11498,26 @@ use-sidecar@^1.1.2: detect-node-es "^1.1.0" tslib "^2.0.0" +use-sync-external-store@1.2.0: + version "1.2.0" + resolved "https://registry.yarnpkg.com/use-sync-external-store/-/use-sync-external-store-1.2.0.tgz#7dbefd6ef3fe4e767a0cf5d7287aacfb5846928a" + integrity sha512-eEgnFxGQ1Ife9bzYs6VLi8/4X6CObHMw9Qr9tPY43iKwsPw8xE8+EFsf/2cFZ5S3esXgpWgtSCtLNS41F+sKPA== + util-deprecate@^1.0.1, util-deprecate@^1.0.2: version "1.0.2" resolved "https://registry.yarnpkg.com/util-deprecate/-/util-deprecate-1.0.2.tgz#450d4dc9fa70de732762fbd2d4a28981419a0ccf" integrity sha1-RQ1Nyfpw3nMnYvvS1KKJgUGaDM8= +uvu@^0.5.0: + version "0.5.6" + resolved "https://registry.yarnpkg.com/uvu/-/uvu-0.5.6.tgz#2754ca20bcb0bb59b64e9985e84d2e81058502df" + integrity sha512-+g8ENReyr8YsOc6fv/NVJs2vFdHBnBNdfE49rshrTzDWOlUx4Gq7KOS2GD8eqhy2j+Ejq29+SbKH8yjkAqXqoA== + dependencies: + dequal "^2.0.0" + diff "^5.0.0" + kleur "^4.0.3" + sade "^1.7.3" + v8-compile-cache@^2.0.3, v8-compile-cache@^2.3.0: version "2.3.0" resolved "https://registry.yarnpkg.com/v8-compile-cache/-/v8-compile-cache-2.3.0.tgz#2de19618c66dc247dcfb6f99338035d8245a2cee" @@ -10193,6 +11540,11 @@ validate-npm-package-license@^3.0.1: spdx-correct "^3.0.0" spdx-expression-parse "^3.0.0" +validator@^13.9.0: + version "13.9.0" + resolved "https://registry.yarnpkg.com/validator/-/validator-13.9.0.tgz#33e7b85b604f3bbce9bb1a05d5c3e22e1c2ff855" + integrity sha512-B+dGG8U3fdtM0/aNK4/X8CXq/EcxU2WPrPEkJGslb47qyHsxmbggTWK0yEA4qnYVNF+nxNlN88o14hIcPmSIEA== + vfile-message@^2.0.0: version "2.0.4" resolved "https://registry.yarnpkg.com/vfile-message/-/vfile-message-2.0.4.tgz#5b43b88171d409eae58477d13f23dd41d52c371a" @@ -10201,6 +11553,14 @@ vfile-message@^2.0.0: "@types/unist" "^2.0.0" unist-util-stringify-position "^2.0.0" +vfile-message@^3.0.0: + version "3.1.3" + resolved "https://registry.yarnpkg.com/vfile-message/-/vfile-message-3.1.3.tgz#1360c27a99234bebf7bddbbbca67807115e6b0dd" + integrity sha512-0yaU+rj2gKAyEk12ffdSbBfjnnj+b1zqTBv3OQCTn8yEB02bsPizwdBPrLJjHnK+cU9EMMcUnNv938XcZIkmdA== + dependencies: + "@types/unist" "^2.0.0" + unist-util-stringify-position "^3.0.0" + vfile@^4.0.0: version "4.2.1" resolved "https://registry.yarnpkg.com/vfile/-/vfile-4.2.1.tgz#03f1dce28fc625c625bc6514350fbdb00fa9e624" @@ -10211,6 +11571,16 @@ vfile@^4.0.0: unist-util-stringify-position "^2.0.0" vfile-message "^2.0.0" +vfile@^5.0.0: + version "5.3.6" + resolved "https://registry.yarnpkg.com/vfile/-/vfile-5.3.6.tgz#61b2e70690cc835a5d0d0fd135beae74e5a39546" + integrity sha512-ADBsmerdGBs2WYckrLBEmuETSPyTD4TuLxTrw0DvjirxW1ra4ZwkbzG8ndsv3Q57smvHxo677MHaQrY9yxH8cA== + dependencies: + "@types/unist" "^2.0.0" + is-buffer "^2.0.0" + unist-util-stringify-position "^3.0.0" + vfile-message "^3.0.0" + w3c-hr-time@^1.0.2: version "1.0.2" resolved "https://registry.yarnpkg.com/w3c-hr-time/-/w3c-hr-time-1.0.2.tgz#0a89cdf5cc15822df9c360543676963e0cc308cd" @@ -10232,7 +11602,7 @@ walker@^1.0.7: dependencies: makeerror "1.0.12" -watchpack@^2.3.1: +watchpack@^2.4.0: version "2.4.0" resolved "https://registry.yarnpkg.com/watchpack/-/watchpack-2.4.0.tgz#fa33032374962c78113f93c7f2fb4c54c9862a5d" integrity sha512-Lcvm7MGST/4fup+ifyKi2hjyIAwcdI4HRgtvTpIUxBRhB+RFtUh8XtDOxUfctVCnhVi+QQj49i91OyvzkJl6cg== @@ -10327,21 +11697,21 @@ webpack-sources@^3.2.1, webpack-sources@^3.2.3: resolved "https://registry.yarnpkg.com/webpack-sources/-/webpack-sources-3.2.3.tgz#2d4daab8451fd4b240cc27055ff6a0c2ccea0cde" integrity sha512-/DyMEOrDgLKKIG0fmvtz+4dUX/3Ghozwgm6iPp8KRhvn+eQf9+Q7GWxVNMk3+uCPWfdXYC4ExGBckIXdFEfH1w== -webpack@^5.73.0: - version "5.73.0" - resolved "https://registry.yarnpkg.com/webpack/-/webpack-5.73.0.tgz#bbd17738f8a53ee5760ea2f59dce7f3431d35d38" - integrity sha512-svjudQRPPa0YiOYa2lM/Gacw0r6PvxptHj4FuEKQ2kX05ZLkjbVc5MnPs6its5j7IZljnIqSVo/OsY2X0IpHGA== +webpack@^5.76.0: + version "5.76.0" + resolved "https://registry.yarnpkg.com/webpack/-/webpack-5.76.0.tgz#f9fb9fb8c4a7dbdcd0d56a98e56b8a942ee2692c" + integrity sha512-l5sOdYBDunyf72HW8dF23rFtWq/7Zgvt/9ftMof71E/yUb1YLOBmTgA2K4vQthB3kotMrSj609txVE0dnr2fjA== dependencies: "@types/eslint-scope" "^3.7.3" "@types/estree" "^0.0.51" "@webassemblyjs/ast" "1.11.1" "@webassemblyjs/wasm-edit" "1.11.1" "@webassemblyjs/wasm-parser" "1.11.1" - acorn "^8.4.1" + acorn "^8.7.1" acorn-import-assertions "^1.7.6" browserslist "^4.14.5" chrome-trace-event "^1.0.2" - enhanced-resolve "^5.9.3" + enhanced-resolve "^5.10.0" es-module-lexer "^0.9.0" eslint-scope "5.1.1" events "^3.2.0" @@ -10354,7 +11724,7 @@ webpack@^5.73.0: schema-utils "^3.1.0" tapable "^2.1.1" terser-webpack-plugin "^5.1.3" - watchpack "^2.3.1" + watchpack "^2.4.0" webpack-sources "^3.2.3" whatwg-encoding@^1.0.5: @@ -10397,6 +11767,18 @@ which-boxed-primitive@^1.0.2: is-string "^1.0.5" is-symbol "^1.0.3" +which-typed-array@^1.1.9: + version "1.1.9" + resolved "https://registry.yarnpkg.com/which-typed-array/-/which-typed-array-1.1.9.tgz#307cf898025848cf995e795e8423c7f337efbde6" + integrity sha512-w9c4xkx6mPidwp7180ckYWfMmvxpjlZuIudNtDf4N/tTAUB8VJbX25qZoAsrtGuYNnGw3pa0AXgbGKRB8/EceA== + dependencies: + available-typed-arrays "^1.0.5" + call-bind "^1.0.2" + for-each "^0.3.3" + gopd "^1.0.1" + has-tostringtag "^1.0.0" + is-typed-array "^1.1.10" + which@^1.3.1: version "1.3.1" resolved "https://registry.yarnpkg.com/which/-/which-1.3.1.tgz#a45043d54f5805316da8d62f9f50918d3da70b0a" @@ -10521,7 +11903,19 @@ yocto-queue@^0.1.0: resolved "https://registry.yarnpkg.com/yocto-queue/-/yocto-queue-0.1.0.tgz#0294eb3dee05028d31ee1a5fa2c556a6aaf10a1b" integrity sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q== +zustand@^4.1.1: + version "4.1.5" + resolved "https://registry.yarnpkg.com/zustand/-/zustand-4.1.5.tgz#7402b511f5b23ccb0f9ba6d20ae01ec817e16eb6" + integrity sha512-PsdRT8Bvq22Yyh1tvpgdHNE7OAeFKqJXUxtJvj1Ixw2B9O2YZ1M34ImQ+xyZah4wZrR4lENMoDUutKPpyXCQ/Q== + dependencies: + use-sync-external-store "1.2.0" + zwitch@^1.0.0: version "1.0.5" resolved "https://registry.yarnpkg.com/zwitch/-/zwitch-1.0.5.tgz#d11d7381ffed16b742f6af7b3f223d5cd9fe9920" integrity sha512-V50KMwwzqJV0NpZIZFwfOD5/lyny3WlSzRiXgA0G7VUnRlqttta1L6UQIHzd6EuBY/cHGfwTIck7w1yH6Q5zUw== + +zwitch@^2.0.0: + version "2.0.4" + resolved "https://registry.yarnpkg.com/zwitch/-/zwitch-2.0.4.tgz#c827d4b0acb76fc3e685a4c6ec2902d51070e9d7" + integrity sha512-bXE4cR/kVZhKZX/RjPEflHaKVhUVl85noU3v6b8apfQEc1x4A+zBxjZ4lN8LqGd6WZ3dl98pY4o717VFmoPp+A== diff --git a/pkgs/development/python-modules/apache-airflow/yarn.nix b/pkgs/servers/apache-airflow/yarn.nix index 956930b71c9c5..c4c75f8e3d2dc 100644 --- a/pkgs/development/python-modules/apache-airflow/yarn.nix +++ b/pkgs/servers/apache-airflow/yarn.nix @@ -1266,6 +1266,14 @@ }; } { + name = "_babel_runtime___runtime_7.20.6.tgz"; + path = fetchurl { + name = "_babel_runtime___runtime_7.20.6.tgz"; + url = "https://registry.yarnpkg.com/@babel/runtime/-/runtime-7.20.6.tgz"; + sha512 = "Q+8MqP7TiHMWzSfwiJwXCjyf4GYA4Dgw3emg/7xmwsdLJOZUp+nMqcOwOzzYheuM1rhDu8FSj2l0aoMygEuXuA=="; + }; + } + { name = "_babel_runtime___runtime_7.17.9.tgz"; path = fetchurl { name = "_babel_runtime___runtime_7.17.9.tgz"; @@ -2226,6 +2234,46 @@ }; } { + name = "_reactflow_background___background_11.1.0.tgz"; + path = fetchurl { + name = "_reactflow_background___background_11.1.0.tgz"; + url = "https://registry.yarnpkg.com/@reactflow/background/-/background-11.1.0.tgz"; + sha512 = "EgDn3rhK+l8jKmE6KGUZvesRjdh7fOqsz5Hj7STUU5/uGsvgN9KFuudY/Ka8m+yCQxqNK8MAJcRMOZd0mvNFMQ=="; + }; + } + { + name = "_reactflow_controls___controls_11.1.0.tgz"; + path = fetchurl { + name = "_reactflow_controls___controls_11.1.0.tgz"; + url = "https://registry.yarnpkg.com/@reactflow/controls/-/controls-11.1.0.tgz"; + sha512 = "5nH1TQ9mkveUOnq7QgohzeAdGR4WwKQJMrWjb5u3Dnm5D5+oRxTE3eGBoaw6B6nYaK1rDrPCcMAuGmEPdEC+Mg=="; + }; + } + { + name = "_reactflow_core___core_11.4.0.tgz"; + path = fetchurl { + name = "_reactflow_core___core_11.4.0.tgz"; + url = "https://registry.yarnpkg.com/@reactflow/core/-/core-11.4.0.tgz"; + sha512 = "AfFp685kmxWs2Iiq35TatG9Q8u5W+eftXECQ0ea55Oi37nrMe5jfWhjnGnnl3bSFcHqAe6avqNiFDwqugU6kzQ=="; + }; + } + { + name = "_reactflow_minimap___minimap_11.3.0.tgz"; + path = fetchurl { + name = "_reactflow_minimap___minimap_11.3.0.tgz"; + url = "https://registry.yarnpkg.com/@reactflow/minimap/-/minimap-11.3.0.tgz"; + sha512 = "nvb4qmbsogjhrn7GWXpvLMtmAyE7mjs0BXvtbpcFVpKqQ3Lbf76zCa8c2krUMnBBqu+9yF0Ftkn7mMCTV2gPLQ=="; + }; + } + { + name = "_reactflow_node_toolbar___node_toolbar_1.1.0.tgz"; + path = fetchurl { + name = "_reactflow_node_toolbar___node_toolbar_1.1.0.tgz"; + url = "https://registry.yarnpkg.com/@reactflow/node-toolbar/-/node-toolbar-1.1.0.tgz"; + sha512 = "kibrTGGvwhFGndVSgwr9E6l9Uddr44csr06X+PJ7FJ0SXgeOHbSw4MaM/9dSFxkFoCi77fPXSdMONNTReSBnIg=="; + }; + } + { name = "_redocly_ajv___ajv_8.6.4.tgz"; path = fetchurl { name = "_redocly_ajv___ajv_8.6.4.tgz"; @@ -2354,6 +2402,70 @@ }; } { + name = "_types_color_convert___color_convert_2.0.0.tgz"; + path = fetchurl { + name = "_types_color_convert___color_convert_2.0.0.tgz"; + url = "https://registry.yarnpkg.com/@types/color-convert/-/color-convert-2.0.0.tgz"; + sha512 = "m7GG7IKKGuJUXvkZ1qqG3ChccdIM/qBBo913z+Xft0nKCX4hAU/IxKwZBU4cpRZ7GS5kV4vOblUkILtSShCPXQ=="; + }; + } + { + name = "_types_color_name___color_name_1.1.1.tgz"; + path = fetchurl { + name = "_types_color_name___color_name_1.1.1.tgz"; + url = "https://registry.yarnpkg.com/@types/color-name/-/color-name-1.1.1.tgz"; + sha512 = "rr+OQyAjxze7GgWrSaJwydHStIhHq2lvY3BOC2Mj7KnzI7XK0Uw1TOOdI9lDoajEbSWLiYgoo4f1R51erQfhPQ=="; + }; + } + { + name = "_types_color___color_3.0.3.tgz"; + path = fetchurl { + name = "_types_color___color_3.0.3.tgz"; + url = "https://registry.yarnpkg.com/@types/color/-/color-3.0.3.tgz"; + sha512 = "X//qzJ3d3Zj82J9sC/C18ZY5f43utPbAJ6PhYt/M7uG6etcF6MRpKdN880KBy43B0BMzSfeT96MzrsNjFI3GbA=="; + }; + } + { + name = "_types_d3_array___d3_array_3.0.3.tgz"; + path = fetchurl { + name = "_types_d3_array___d3_array_3.0.3.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-array/-/d3-array-3.0.3.tgz"; + sha512 = "Reoy+pKnvsksN0lQUlcH6dOGjRZ/3WRwXR//m+/8lt1BXeI4xyaUZoqULNjyXXRuh0Mj4LNpkCvhUpQlY3X5xQ=="; + }; + } + { + name = "_types_d3_axis___d3_axis_3.0.1.tgz"; + path = fetchurl { + name = "_types_d3_axis___d3_axis_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-axis/-/d3-axis-3.0.1.tgz"; + sha512 = "zji/iIbdd49g9WN0aIsGcwcTBUkgLsCSwB+uH+LPVDAiKWENMtI3cJEWt+7/YYwelMoZmbBfzA3qCdrZ2XFNnw=="; + }; + } + { + name = "_types_d3_brush___d3_brush_3.0.1.tgz"; + path = fetchurl { + name = "_types_d3_brush___d3_brush_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-brush/-/d3-brush-3.0.1.tgz"; + sha512 = "B532DozsiTuQMHu2YChdZU0qsFJSio3Q6jmBYGYNp3gMDzBmuFFgPt9qKA4VYuLZMp4qc6eX7IUFUEsvHiXZAw=="; + }; + } + { + name = "_types_d3_chord___d3_chord_3.0.1.tgz"; + path = fetchurl { + name = "_types_d3_chord___d3_chord_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-chord/-/d3-chord-3.0.1.tgz"; + sha512 = "eQfcxIHrg7V++W8Qxn6QkqBNBokyhdWSAS73AbkbMzvLQmVVBviknoz2SRS/ZJdIOmhcmmdCRE/NFOm28Z1AMw=="; + }; + } + { + name = "_types_d3_color___d3_color_3.1.0.tgz"; + path = fetchurl { + name = "_types_d3_color___d3_color_3.1.0.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-color/-/d3-color-3.1.0.tgz"; + sha512 = "HKuicPHJuvPgCD+np6Se9MQvS6OCbJmOjGvylzMJRlDwUXjKTTXs6Pwgk79O09Vj/ho3u1ofXnhFOaEWWPrlwA=="; + }; + } + { name = "_types_d3_color___d3_color_1.4.2.tgz"; path = fetchurl { name = "_types_d3_color___d3_color_1.4.2.tgz"; @@ -2362,6 +2474,102 @@ }; } { + name = "_types_d3_contour___d3_contour_3.0.1.tgz"; + path = fetchurl { + name = "_types_d3_contour___d3_contour_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-contour/-/d3-contour-3.0.1.tgz"; + sha512 = "C3zfBrhHZvrpAAK3YXqLWVAGo87A4SvJ83Q/zVJ8rFWJdKejUnDYaWZPkA8K84kb2vDA/g90LTQAz7etXcgoQQ=="; + }; + } + { + name = "_types_d3_delaunay___d3_delaunay_6.0.1.tgz"; + path = fetchurl { + name = "_types_d3_delaunay___d3_delaunay_6.0.1.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-delaunay/-/d3-delaunay-6.0.1.tgz"; + sha512 = "tLxQ2sfT0p6sxdG75c6f/ekqxjyYR0+LwPrsO1mbC9YDBzPJhs2HbJJRrn8Ez1DBoHRo2yx7YEATI+8V1nGMnQ=="; + }; + } + { + name = "_types_d3_dispatch___d3_dispatch_3.0.1.tgz"; + path = fetchurl { + name = "_types_d3_dispatch___d3_dispatch_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-dispatch/-/d3-dispatch-3.0.1.tgz"; + sha512 = "NhxMn3bAkqhjoxabVJWKryhnZXXYYVQxaBnbANu0O94+O/nX9qSjrA1P1jbAQJxJf+VC72TxDX/YJcKue5bRqw=="; + }; + } + { + name = "_types_d3_drag___d3_drag_3.0.1.tgz"; + path = fetchurl { + name = "_types_d3_drag___d3_drag_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-drag/-/d3-drag-3.0.1.tgz"; + sha512 = "o1Va7bLwwk6h03+nSM8dpaGEYnoIG19P0lKqlic8Un36ymh9NSkNFX1yiXMKNMx8rJ0Kfnn2eovuFaL6Jvj0zA=="; + }; + } + { + name = "_types_d3_dsv___d3_dsv_3.0.0.tgz"; + path = fetchurl { + name = "_types_d3_dsv___d3_dsv_3.0.0.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-dsv/-/d3-dsv-3.0.0.tgz"; + sha512 = "o0/7RlMl9p5n6FQDptuJVMxDf/7EDEv2SYEO/CwdG2tr1hTfUVi0Iavkk2ax+VpaQ/1jVhpnj5rq1nj8vwhn2A=="; + }; + } + { + name = "_types_d3_ease___d3_ease_3.0.0.tgz"; + path = fetchurl { + name = "_types_d3_ease___d3_ease_3.0.0.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-ease/-/d3-ease-3.0.0.tgz"; + sha512 = "aMo4eaAOijJjA6uU+GIeW018dvy9+oH5Y2VPPzjjfxevvGQ/oRDs+tfYC9b50Q4BygRR8yE2QCLsrT0WtAVseA=="; + }; + } + { + name = "_types_d3_fetch___d3_fetch_3.0.1.tgz"; + path = fetchurl { + name = "_types_d3_fetch___d3_fetch_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-fetch/-/d3-fetch-3.0.1.tgz"; + sha512 = "toZJNOwrOIqz7Oh6Q7l2zkaNfXkfR7mFSJvGvlD/Ciq/+SQ39d5gynHJZ/0fjt83ec3WL7+u3ssqIijQtBISsw=="; + }; + } + { + name = "_types_d3_force___d3_force_3.0.3.tgz"; + path = fetchurl { + name = "_types_d3_force___d3_force_3.0.3.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-force/-/d3-force-3.0.3.tgz"; + sha512 = "z8GteGVfkWJMKsx6hwC3SiTSLspL98VNpmvLpEFJQpZPq6xpA1I8HNBDNSpukfK0Vb0l64zGFhzunLgEAcBWSA=="; + }; + } + { + name = "_types_d3_format___d3_format_3.0.1.tgz"; + path = fetchurl { + name = "_types_d3_format___d3_format_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-format/-/d3-format-3.0.1.tgz"; + sha512 = "5KY70ifCCzorkLuIkDe0Z9YTf9RR2CjBX1iaJG+rgM/cPP+sO+q9YdQ9WdhQcgPj1EQiJ2/0+yUkkziTG6Lubg=="; + }; + } + { + name = "_types_d3_geo___d3_geo_3.0.2.tgz"; + path = fetchurl { + name = "_types_d3_geo___d3_geo_3.0.2.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-geo/-/d3-geo-3.0.2.tgz"; + sha512 = "DbqK7MLYA8LpyHQfv6Klz0426bQEf7bRTvhMy44sNGVyZoWn//B0c+Qbeg8Osi2Obdc9BLLXYAKpyWege2/7LQ=="; + }; + } + { + name = "_types_d3_hierarchy___d3_hierarchy_3.1.0.tgz"; + path = fetchurl { + name = "_types_d3_hierarchy___d3_hierarchy_3.1.0.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-hierarchy/-/d3-hierarchy-3.1.0.tgz"; + sha512 = "g+sey7qrCa3UbsQlMZZBOHROkFqx7KZKvUpRzI/tAp/8erZWpYq7FgNKvYwebi2LaEiVs1klhUfd3WCThxmmWQ=="; + }; + } + { + name = "_types_d3_interpolate___d3_interpolate_3.0.1.tgz"; + path = fetchurl { + name = "_types_d3_interpolate___d3_interpolate_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-interpolate/-/d3-interpolate-3.0.1.tgz"; + sha512 = "jx5leotSeac3jr0RePOH1KdR9rISG91QIE4Q2PYTu4OymLTZfA3SrnURSLzKH48HmXVUru50b8nje4E79oQSQw=="; + }; + } + { name = "_types_d3_interpolate___d3_interpolate_1.4.2.tgz"; path = fetchurl { name = "_types_d3_interpolate___d3_interpolate_1.4.2.tgz"; @@ -2370,6 +2578,14 @@ }; } { + name = "_types_d3_path___d3_path_3.0.0.tgz"; + path = fetchurl { + name = "_types_d3_path___d3_path_3.0.0.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-path/-/d3-path-3.0.0.tgz"; + sha512 = "0g/A+mZXgFkQxN3HniRDbXMN79K3CdTpLsevj+PXiTcb2hVyvkZUBg37StmgCQkaD84cUJ4uaDAWq7UJOQy2Tg=="; + }; + } + { name = "_types_d3_path___d3_path_1.0.9.tgz"; path = fetchurl { name = "_types_d3_path___d3_path_1.0.9.tgz"; @@ -2378,6 +2594,46 @@ }; } { + name = "_types_d3_polygon___d3_polygon_3.0.0.tgz"; + path = fetchurl { + name = "_types_d3_polygon___d3_polygon_3.0.0.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-polygon/-/d3-polygon-3.0.0.tgz"; + sha512 = "D49z4DyzTKXM0sGKVqiTDTYr+DHg/uxsiWDAkNrwXYuiZVd9o9wXZIo+YsHkifOiyBkmSWlEngHCQme54/hnHw=="; + }; + } + { + name = "_types_d3_quadtree___d3_quadtree_3.0.2.tgz"; + path = fetchurl { + name = "_types_d3_quadtree___d3_quadtree_3.0.2.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-quadtree/-/d3-quadtree-3.0.2.tgz"; + sha512 = "QNcK8Jguvc8lU+4OfeNx+qnVy7c0VrDJ+CCVFS9srBo2GL9Y18CnIxBdTF3v38flrGy5s1YggcoAiu6s4fLQIw=="; + }; + } + { + name = "_types_d3_random___d3_random_3.0.1.tgz"; + path = fetchurl { + name = "_types_d3_random___d3_random_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-random/-/d3-random-3.0.1.tgz"; + sha512 = "IIE6YTekGczpLYo/HehAy3JGF1ty7+usI97LqraNa8IiDur+L44d0VOjAvFQWJVdZOJHukUJw+ZdZBlgeUsHOQ=="; + }; + } + { + name = "_types_d3_scale_chromatic___d3_scale_chromatic_3.0.0.tgz"; + path = fetchurl { + name = "_types_d3_scale_chromatic___d3_scale_chromatic_3.0.0.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-scale-chromatic/-/d3-scale-chromatic-3.0.0.tgz"; + sha512 = "dsoJGEIShosKVRBZB0Vo3C8nqSDqVGujJU6tPznsBJxNJNwMF8utmS83nvCBKQYPpjCzaaHcrf66iTRpZosLPw=="; + }; + } + { + name = "_types_d3_scale___d3_scale_4.0.2.tgz"; + path = fetchurl { + name = "_types_d3_scale___d3_scale_4.0.2.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-scale/-/d3-scale-4.0.2.tgz"; + sha512 = "Yk4htunhPAwN0XGlIwArRomOjdoBFXC3+kCxK2Ubg7I9shQlVSJy/pG/Ht5ASN+gdMIalpk8TJ5xV74jFsetLA=="; + }; + } + { name = "_types_d3_scale___d3_scale_3.3.2.tgz"; path = fetchurl { name = "_types_d3_scale___d3_scale_3.3.2.tgz"; @@ -2386,6 +2642,22 @@ }; } { + name = "_types_d3_selection___d3_selection_3.0.3.tgz"; + path = fetchurl { + name = "_types_d3_selection___d3_selection_3.0.3.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-selection/-/d3-selection-3.0.3.tgz"; + sha512 = "Mw5cf6nlW1MlefpD9zrshZ+DAWL4IQ5LnWfRheW6xwsdaWOb6IRRu2H7XPAQcyXEx1D7XQWgdoKR83ui1/HlEA=="; + }; + } + { + name = "_types_d3_shape___d3_shape_3.1.0.tgz"; + path = fetchurl { + name = "_types_d3_shape___d3_shape_3.1.0.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-shape/-/d3-shape-3.1.0.tgz"; + sha512 = "jYIYxFFA9vrJ8Hd4Se83YI6XF+gzDL1aC5DCsldai4XYYiVNdhtpGbA/GM6iyQ8ayhSp3a148LY34hy7A4TxZA=="; + }; + } + { name = "_types_d3_shape___d3_shape_1.3.8.tgz"; path = fetchurl { name = "_types_d3_shape___d3_shape_1.3.8.tgz"; @@ -2394,6 +2666,22 @@ }; } { + name = "_types_d3_time_format___d3_time_format_4.0.0.tgz"; + path = fetchurl { + name = "_types_d3_time_format___d3_time_format_4.0.0.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-time-format/-/d3-time-format-4.0.0.tgz"; + sha512 = "yjfBUe6DJBsDin2BMIulhSHmr5qNR5Pxs17+oW4DoVPyVIXZ+m6bs7j1UVKP08Emv6jRmYrYqxYzO63mQxy1rw=="; + }; + } + { + name = "_types_d3_time___d3_time_3.0.0.tgz"; + path = fetchurl { + name = "_types_d3_time___d3_time_3.0.0.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-time/-/d3-time-3.0.0.tgz"; + sha512 = "sZLCdHvBUcNby1cB6Fd3ZBrABbjz3v1Vm90nysCQ6Vt7vd6e/h9Lt7SiJUoEX0l4Dzc7P5llKyhqSi1ycSf1Hg=="; + }; + } + { name = "_types_d3_time___d3_time_2.1.1.tgz"; path = fetchurl { name = "_types_d3_time___d3_time_2.1.1.tgz"; @@ -2402,6 +2690,46 @@ }; } { + name = "_types_d3_timer___d3_timer_3.0.0.tgz"; + path = fetchurl { + name = "_types_d3_timer___d3_timer_3.0.0.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-timer/-/d3-timer-3.0.0.tgz"; + sha512 = "HNB/9GHqu7Fo8AQiugyJbv6ZxYz58wef0esl4Mv828w1ZKpAshw/uFWVDUcIB9KKFeFKoxS3cHY07FFgtTRZ1g=="; + }; + } + { + name = "_types_d3_transition___d3_transition_3.0.2.tgz"; + path = fetchurl { + name = "_types_d3_transition___d3_transition_3.0.2.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-transition/-/d3-transition-3.0.2.tgz"; + sha512 = "jo5o/Rf+/u6uerJ/963Dc39NI16FQzqwOc54bwvksGAdVfvDrqDpVeq95bEvPtBwLCVZutAEyAtmSyEMxN7vxQ=="; + }; + } + { + name = "_types_d3_zoom___d3_zoom_3.0.1.tgz"; + path = fetchurl { + name = "_types_d3_zoom___d3_zoom_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/@types/d3-zoom/-/d3-zoom-3.0.1.tgz"; + sha512 = "7s5L9TjfqIYQmQQEUcpMAcBOahem7TRoSO/+Gkz02GbMVuULiZzjF2BOdw291dbO2aNon4m2OdFsRGaCq2caLQ=="; + }; + } + { + name = "_types_d3___d3_7.4.0.tgz"; + path = fetchurl { + name = "_types_d3___d3_7.4.0.tgz"; + url = "https://registry.yarnpkg.com/@types/d3/-/d3-7.4.0.tgz"; + sha512 = "jIfNVK0ZlxcuRDKtRS/SypEyOQ6UHaFQBKv032X45VvxSJ6Yi5G9behy9h6tNTHTDGh5Vq+KbmBjUWLgY4meCA=="; + }; + } + { + name = "_types_debug___debug_4.1.7.tgz"; + path = fetchurl { + name = "_types_debug___debug_4.1.7.tgz"; + url = "https://registry.yarnpkg.com/@types/debug/-/debug-4.1.7.tgz"; + sha512 = "9AonUzyTjXXhEOa0DnqpzZi6VHlqKMswga9EXjpXnnqxwLtdvPPtlO8evrI5D9S6asFRCQ6v+wpiUKbw+vKqyg=="; + }; + } + { name = "_types_eslint_scope___eslint_scope_3.7.3.tgz"; path = fetchurl { name = "_types_eslint_scope___eslint_scope_3.7.3.tgz"; @@ -2426,6 +2754,14 @@ }; } { + name = "_types_geojson___geojson_7946.0.10.tgz"; + path = fetchurl { + name = "_types_geojson___geojson_7946.0.10.tgz"; + url = "https://registry.yarnpkg.com/@types/geojson/-/geojson-7946.0.10.tgz"; + sha512 = "Nmh0K3iWQJzniTuPRcJn5hxXkfB1T1pgB89SBig5PlJQU5yocazeu4jATJlaA0GYFKWMqDdvYemoSnF2pXgLVA=="; + }; + } + { name = "_types_glob___glob_7.1.3.tgz"; path = fetchurl { name = "_types_glob___glob_7.1.3.tgz"; @@ -2442,6 +2778,14 @@ }; } { + name = "_types_hast___hast_2.3.4.tgz"; + path = fetchurl { + name = "_types_hast___hast_2.3.4.tgz"; + url = "https://registry.yarnpkg.com/@types/hast/-/hast-2.3.4.tgz"; + sha512 = "wLEm0QvaoawEDoTRwzTXp4b4jpwiJDvR5KMnFnVodm3scufTlBOWRD6N1OBf9TZMhjlNsSfcO5V+7AF4+Vy+9g=="; + }; + } + { name = "_types_istanbul_lib_coverage___istanbul_lib_coverage_2.0.3.tgz"; path = fetchurl { name = "_types_istanbul_lib_coverage___istanbul_lib_coverage_2.0.3.tgz"; @@ -2546,6 +2890,14 @@ }; } { + name = "_types_ms___ms_0.7.31.tgz"; + path = fetchurl { + name = "_types_ms___ms_0.7.31.tgz"; + url = "https://registry.yarnpkg.com/@types/ms/-/ms-0.7.31.tgz"; + sha512 = "iiUgKzV9AuaEkZqkOLDIvlQiL6ltuZd9tGcW3gwpnX8JbuiuhFlEGmmFXEXkN50Cvq7Os88IY2v0dkDqXYWVgA=="; + }; + } + { name = "_types_node___node_15.12.2.tgz"; path = fetchurl { name = "_types_node___node_15.12.2.tgz"; @@ -2594,6 +2946,14 @@ }; } { + name = "_types_prop_types___prop_types_15.7.5.tgz"; + path = fetchurl { + name = "_types_prop_types___prop_types_15.7.5.tgz"; + url = "https://registry.yarnpkg.com/@types/prop-types/-/prop-types-15.7.5.tgz"; + sha512 = "JCB8C6SnDoQf0cNycqd/35A7MjcnK+ZTqE7judS6o7utxUCg6imJg3QK2qzHKszlTjcj2cn+NwMB2i96ubpj7w=="; + }; + } + { name = "_types_react_dom___react_dom_18.0.5.tgz"; path = fetchurl { name = "_types_react_dom___react_dom_18.0.5.tgz"; @@ -3242,6 +3602,14 @@ }; } { + name = "array_buffer_byte_length___array_buffer_byte_length_1.0.0.tgz"; + path = fetchurl { + name = "array_buffer_byte_length___array_buffer_byte_length_1.0.0.tgz"; + url = "https://registry.yarnpkg.com/array-buffer-byte-length/-/array-buffer-byte-length-1.0.0.tgz"; + sha512 = "LPuwb2P+NrQw3XhxGc36+XSvuBPopovXYTR9Ew++Du9Yb/bx5AzBfrIsBoj0EZUifjQU+sHL21sseZ3jerWO/A=="; + }; + } + { name = "array_includes___array_includes_3.1.3.tgz"; path = fetchurl { name = "array_includes___array_includes_3.1.3.tgz"; @@ -3258,6 +3626,14 @@ }; } { + name = "array_includes___array_includes_3.1.6.tgz"; + path = fetchurl { + name = "array_includes___array_includes_3.1.6.tgz"; + url = "https://registry.yarnpkg.com/array-includes/-/array-includes-3.1.6.tgz"; + sha512 = "sgTbLvL6cNnw24FnbaDyjmvddQ2ML8arZsgaJhoABMoplz/4QRhtrYS+alr1BUM1Bwp6dhx8vVCBSLG+StwOFw=="; + }; + } + { name = "array_union___array_union_1.0.2.tgz"; path = fetchurl { name = "array_union___array_union_1.0.2.tgz"; @@ -3282,11 +3658,11 @@ }; } { - name = "array.prototype.flat___array.prototype.flat_1.3.0.tgz"; + name = "array.prototype.flat___array.prototype.flat_1.3.1.tgz"; path = fetchurl { - name = "array.prototype.flat___array.prototype.flat_1.3.0.tgz"; - url = "https://registry.yarnpkg.com/array.prototype.flat/-/array.prototype.flat-1.3.0.tgz"; - sha512 = "12IUEkHsAhA4DY5s0FPgNXIdc8VRSqD9Zp78a5au9abH/SOBrsp082JOWFNTjkMozh8mqcdiKuaLGhPeYztxSw=="; + name = "array.prototype.flat___array.prototype.flat_1.3.1.tgz"; + url = "https://registry.yarnpkg.com/array.prototype.flat/-/array.prototype.flat-1.3.1.tgz"; + sha512 = "roTU0KWIOmJ4DRLmwKd19Otg0/mT3qPNt0Qb3GWW8iObuZXxrjB/pzn0R3hqpRSWg4HCwqx+0vwOnWnvlOyeIA=="; }; } { @@ -3298,6 +3674,14 @@ }; } { + name = "array.prototype.flatmap___array.prototype.flatmap_1.3.1.tgz"; + path = fetchurl { + name = "array.prototype.flatmap___array.prototype.flatmap_1.3.1.tgz"; + url = "https://registry.yarnpkg.com/array.prototype.flatmap/-/array.prototype.flatmap-1.3.1.tgz"; + sha512 = "8UGn9O1FDVvMNB0UlLv4voxRMze7+FpHyF5mSMRjWHUMlpoDViniy05870VlxhfgTnLbpuwTzvD76MTtWxB/mQ=="; + }; + } + { name = "arrify___arrify_1.0.1.tgz"; path = fetchurl { name = "arrify___arrify_1.0.1.tgz"; @@ -3306,6 +3690,14 @@ }; } { + name = "asap___asap_2.0.6.tgz"; + path = fetchurl { + name = "asap___asap_2.0.6.tgz"; + url = "https://registry.yarnpkg.com/asap/-/asap-2.0.6.tgz"; + sha512 = "BSHWgDSAiKs50o2Re8ppvp3seVHXSRM44cdSsT9FfNEUUZLOGWVCsiWaRPWM1Znn+mqZ1OfVZ3z3DWEzSp7hRA=="; + }; + } + { name = "ast_types_flow___ast_types_flow_0.0.7.tgz"; path = fetchurl { name = "ast_types_flow___ast_types_flow_0.0.7.tgz"; @@ -3346,6 +3738,14 @@ }; } { + name = "available_typed_arrays___available_typed_arrays_1.0.5.tgz"; + path = fetchurl { + name = "available_typed_arrays___available_typed_arrays_1.0.5.tgz"; + url = "https://registry.yarnpkg.com/available-typed-arrays/-/available-typed-arrays-1.0.5.tgz"; + sha512 = "DMD0KiN46eipeziST1LPP/STfDU0sufISXmjSgvVsoU2tqxctQeASejWcfNtxYKqETM1UxQ8sp2OrSBWpHY6sw=="; + }; + } + { name = "axe_core___axe_core_4.4.2.tgz"; path = fetchurl { name = "axe_core___axe_core_4.4.2.tgz"; @@ -3386,11 +3786,11 @@ }; } { - name = "babel_loader___babel_loader_8.2.2.tgz"; + name = "babel_loader___babel_loader_9.1.2.tgz"; path = fetchurl { - name = "babel_loader___babel_loader_8.2.2.tgz"; - url = "https://registry.yarnpkg.com/babel-loader/-/babel-loader-8.2.2.tgz"; - sha512 = "JvTd0/D889PQBtUXJ2PXaKU/pjZDMtHA9V2ecm+eNRmmBCMR09a+fmpGTNwnJtFmFl5Ei7Vy47LjBb+L0wQ99g=="; + name = "babel_loader___babel_loader_9.1.2.tgz"; + url = "https://registry.yarnpkg.com/babel-loader/-/babel-loader-9.1.2.tgz"; + sha512 = "mN14niXW43tddohGl8HPu5yfQq70iUThvFL/4QzESA7GcZoC0eVOhvWdQ8+3UlSjaDE9MVtsW9mxDY07W7VpVA=="; }; } { @@ -3490,6 +3890,14 @@ }; } { + name = "bail___bail_2.0.2.tgz"; + path = fetchurl { + name = "bail___bail_2.0.2.tgz"; + url = "https://registry.yarnpkg.com/bail/-/bail-2.0.2.tgz"; + sha512 = "0xO6mYd7JB2YesxDKplafRpsiOzPt9V02ddPCLbY1xYGPOX24NTyN50qnUxgCPcSoYMhKpAuBTjQoRZCAkUDRw=="; + }; + } + { name = "balanced_match___balanced_match_1.0.2.tgz"; path = fetchurl { name = "balanced_match___balanced_match_1.0.2.tgz"; @@ -3506,6 +3914,14 @@ }; } { + name = "base16___base16_1.0.0.tgz"; + path = fetchurl { + name = "base16___base16_1.0.0.tgz"; + url = "https://registry.yarnpkg.com/base16/-/base16-1.0.0.tgz"; + sha512 = "pNdYkNPiJUnEhnfXV56+sQy8+AaPcG3POZAUnwr4EeqCUZFz4u2PePbo3e5Gj4ziYPCWGUZT9RHisvJKnwFuBQ=="; + }; + } + { name = "big_integer___big_integer_1.6.51.tgz"; path = fetchurl { name = "big_integer___big_integer_1.6.51.tgz"; @@ -3594,14 +4010,6 @@ }; } { - name = "browserslist___browserslist_4.16.6.tgz"; - path = fetchurl { - name = "browserslist___browserslist_4.16.6.tgz"; - url = "https://registry.yarnpkg.com/browserslist/-/browserslist-4.16.6.tgz"; - sha512 = "Wspk/PqO+4W9qp5iUTJsa1B/QrYn1keNCcEP5OvP7WBwT4KaDly0uONYmC6Xa3Z5IqnUgS0KcgLYu1l74x0ZXQ=="; - }; - } - { name = "bser___bser_2.1.1.tgz"; path = fetchurl { name = "bser___bser_2.1.1.tgz"; @@ -3618,6 +4026,14 @@ }; } { + name = "busboy___busboy_1.6.0.tgz"; + path = fetchurl { + name = "busboy___busboy_1.6.0.tgz"; + url = "https://registry.yarnpkg.com/busboy/-/busboy-1.6.0.tgz"; + sha512 = "8SFQbg/0hQ9xy3UNTB0YEnsNBbWfhf7RtnzpL7TkBiTBRfrQ9Fxcnz7VJsleJpyp6rVLvXiuORqjlHi5q+PYuA=="; + }; + } + { name = "cacache___cacache_15.2.0.tgz"; path = fetchurl { name = "cacache___cacache_15.2.0.tgz"; @@ -3690,27 +4106,19 @@ }; } { - name = "caniuse_lite___caniuse_lite_1.0.30001355.tgz"; - path = fetchurl { - name = "caniuse_lite___caniuse_lite_1.0.30001355.tgz"; - url = "https://registry.yarnpkg.com/caniuse-lite/-/caniuse-lite-1.0.30001355.tgz"; - sha512 = "Sd6pjJHF27LzCB7pT7qs+kuX2ndurzCzkpJl6Qct7LPSZ9jn0bkOA8mdgMgmqnQAWLVOOGjLpc+66V57eLtb1g=="; - }; - } - { - name = "https___registry.npmjs.org_caniuse_lite___caniuse_lite_1.0.30001312.tgz"; + name = "https___registry.npmjs.org_caniuse_lite___caniuse_lite_1.0.30001439.tgz"; path = fetchurl { - name = "https___registry.npmjs.org_caniuse_lite___caniuse_lite_1.0.30001312.tgz"; - url = "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001312.tgz"; - sha512 = "Wiz1Psk2MEK0pX3rUzWaunLTZzqS2JYZFzNKqAiJGiuxIjRPLgV6+VDPOg6lQOUxmDwhTlh198JsTTi8Hzw6aQ=="; + name = "https___registry.npmjs.org_caniuse_lite___caniuse_lite_1.0.30001439.tgz"; + url = "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001439.tgz"; + sha512 = 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"shx7oQ0Awen/BRIdkjkvz54PnEEI/EjwXDSIZp86/KKdbafHh1Df/RYGBhn4hbe2+uKC9FnT5UCEdyPz3ai9hQ=="; + }; + } + { name = "character_reference_invalid___character_reference_invalid_1.1.4.tgz"; path = fetchurl { name = "character_reference_invalid___character_reference_invalid_1.1.4.tgz"; @@ -3826,6 +4242,14 @@ }; } { + name = "classcat___classcat_5.0.4.tgz"; + path = fetchurl { + name = "classcat___classcat_5.0.4.tgz"; + url = "https://registry.yarnpkg.com/classcat/-/classcat-5.0.4.tgz"; + sha512 = "sbpkOw6z413p+HDGcBENe498WM9woqWHiJxCq7nvmxe9WmrUmqfAcxpIwAiMtM5Q3AhYkzXcNQHqsWq0mND51g=="; + }; + } + { name = "classnames___classnames_2.3.1.tgz"; path = fetchurl { name = "classnames___classnames_2.3.1.tgz"; @@ -3946,6 +4370,22 @@ }; } { + name = "color_string___color_string_1.9.1.tgz"; + path = fetchurl { + name = "color_string___color_string_1.9.1.tgz"; + url = "https://registry.yarnpkg.com/color-string/-/color-string-1.9.1.tgz"; + sha512 = "shrVawQFojnZv6xM40anx4CkoDP+fZsw/ZerEMsW/pyzsRbElpsL/DBVW7q3ExxwusdNXI3lXpuhEZkzs8p5Eg=="; + }; + } + { + name = "color___color_4.2.3.tgz"; + path = fetchurl { + name = "color___color_4.2.3.tgz"; + url = "https://registry.yarnpkg.com/color/-/color-4.2.3.tgz"; + sha512 = "1rXeuUUiGGrykh+CeBdu5Ie7OJwinCgQY0bc7GCRxy5xVHy+moaqkpL/jqQq0MtQOeYcrqEz4abc5f0KtU7W4A=="; + }; + } + { name = "colord___colord_2.9.2.tgz"; path = fetchurl { name = "colord___colord_2.9.2.tgz"; @@ -3978,6 +4418,14 @@ }; } { + name = "comma_separated_tokens___comma_separated_tokens_2.0.3.tgz"; + path = fetchurl { + name = "comma_separated_tokens___comma_separated_tokens_2.0.3.tgz"; + url = "https://registry.yarnpkg.com/comma-separated-tokens/-/comma-separated-tokens-2.0.3.tgz"; + sha512 = "Fu4hJdvzeylCfQPp9SGWidpzrMs7tTrlu6Vb8XGaRGck8QSNZJJp538Wrb60Lax4fPwR64ViY468OIUTbRlGZg=="; + }; + } + { name = "commander___commander_2.20.3.tgz"; path = fetchurl { name = "commander___commander_2.20.3.tgz"; @@ -4014,7 +4462,7 @@ path = fetchurl { name = "concat_map___concat_map_0.0.1.tgz"; url = "https://registry.yarnpkg.com/concat-map/-/concat-map-0.0.1.tgz"; - sha1 = "2Klr13/Wjfd5OnMDajug1UBdR3s="; + sha512 = "/Srv4dswyQNBfohGpz9o6Yb3Gz3SrUDqBH5rTuhGR7ahtlbYKnVxw2bCFMRljaA7EXHaXZ8wsHdodFvbkhKmqg=="; }; } { @@ -4106,6 +4554,14 @@ }; } { + name = "cross_fetch___cross_fetch_3.1.5.tgz"; + path = fetchurl { + name = "cross_fetch___cross_fetch_3.1.5.tgz"; + url = "https://registry.yarnpkg.com/cross-fetch/-/cross-fetch-3.1.5.tgz"; + sha512 = "lvb1SBsI0Z7GDwmuid+mU3kWVBwTVUbe7S0H52yaaAdQOXq2YktTCZdlAcNKFzE6QtRz0snpw9bNiPeOIkkQvw=="; + }; + } + { name = "cross_spawn___cross_spawn_7.0.3.tgz"; path = fetchurl { name = "cross_spawn___cross_spawn_7.0.3.tgz"; @@ -4314,19 +4770,11 @@ }; } { - name = "d3_color___d3_color_1.4.1.tgz"; + name = "d3_color___d3_color_3.1.0.tgz"; path = fetchurl { - name = "d3_color___d3_color_1.4.1.tgz"; - url = "https://registry.yarnpkg.com/d3-color/-/d3-color-1.4.1.tgz"; - sha512 = 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name = "d3_drag___d3_drag_1.2.5.tgz"; @@ -4354,6 +4810,14 @@ }; } { + name = "d3_drag___d3_drag_3.0.0.tgz"; + path = fetchurl { + name = "d3_drag___d3_drag_3.0.0.tgz"; + url = "https://registry.yarnpkg.com/d3-drag/-/d3-drag-3.0.0.tgz"; + sha512 = "pWbUJLdETVA8lQNJecMxoXfH6x+mO2UQo8rSmZ+QqxcbyA3hfeprFgIT//HW2nlHChWeIIMwS2Fq+gEARkhTkg=="; + }; + } + { name = "d3_dsv___d3_dsv_1.2.0.tgz"; path = fetchurl { name = "d3_dsv___d3_dsv_1.2.0.tgz"; @@ -4370,6 +4834,14 @@ }; } { + name = "d3_ease___d3_ease_3.0.1.tgz"; + path = fetchurl { + name = "d3_ease___d3_ease_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/d3-ease/-/d3-ease-3.0.1.tgz"; + sha512 = "wR/XK3D3XcLIZwpbvQwQ5fK+8Ykds1ip7A2Txe0yxncXSdq1L9skcG7blcedkOX+ZcgxGAmLX1FrRGbADwzi0w=="; + }; + } + { name = "d3_fetch___d3_fetch_1.2.0.tgz"; path = fetchurl { name = "d3_fetch___d3_fetch_1.2.0.tgz"; @@ -4426,6 +4898,14 @@ }; } { + name = "d3_interpolate___d3_interpolate_3.0.1.tgz"; + path = fetchurl { + name = "d3_interpolate___d3_interpolate_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/d3-interpolate/-/d3-interpolate-3.0.1.tgz"; + sha512 = "3bYs1rOD33uo8aqJfKP3JWPAibgw8Zm2+L9vBKEHJ2Rg+viTR7o5Mmv5mZcieN+FRYaAOWX5SJATX6k1PWz72g=="; + }; + } + { name = "d3_interpolate___d3_interpolate_2.0.1.tgz"; path = fetchurl { name = "d3_interpolate___d3_interpolate_2.0.1.tgz"; @@ -4506,6 +4986,14 @@ }; } { + name = "d3_selection___d3_selection_3.0.0.tgz"; + path = fetchurl { + name = "d3_selection___d3_selection_3.0.0.tgz"; + url = "https://registry.yarnpkg.com/d3-selection/-/d3-selection-3.0.0.tgz"; + sha512 = "fmTRWbNMmsmWq6xJV8D19U/gw/bwrHfNXxrIN+HfZgnzqTHp9jOmKMhsTUjXOJnZOdZY9Q28y4yebKzqDKlxlQ=="; + }; + } + { name = "d3_shape___d3_shape_1.3.7.tgz"; path = fetchurl { name = "d3_shape___d3_shape_1.3.7.tgz"; @@ -4562,6 +5050,14 @@ }; } { + name = "d3_timer___d3_timer_3.0.1.tgz"; + path = fetchurl { + name = "d3_timer___d3_timer_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/d3-timer/-/d3-timer-3.0.1.tgz"; + sha512 = "ndfJ/JxxMd3nw31uyKoY2naivF+r29V+Lc0svZxe1JvvIRmi8hUsrMvdOwgS1o6uBHmiz91geQ0ylPP0aj1VUA=="; + }; + } + { name = "d3_tip___d3_tip_0.9.1.tgz"; path = fetchurl { name = "d3_tip___d3_tip_0.9.1.tgz"; @@ -4578,6 +5074,14 @@ }; } { + name = "d3_transition___d3_transition_3.0.1.tgz"; + path = fetchurl { + name = "d3_transition___d3_transition_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/d3-transition/-/d3-transition-3.0.1.tgz"; + sha512 = "ApKvfjsSR6tg06xrL434C0WydLr7JewBB3V+/39RMHsaXTOG0zmt/OAXeng5M5LBm0ojmxJrpomQVZ1aPvBL4w=="; + }; + } + { name = "d3_voronoi___d3_voronoi_1.1.4.tgz"; path = fetchurl { name = "d3_voronoi___d3_voronoi_1.1.4.tgz"; @@ -4594,11 +5098,19 @@ }; } { + name = "d3_zoom___d3_zoom_3.0.0.tgz"; + path = fetchurl { + name = "d3_zoom___d3_zoom_3.0.0.tgz"; + url = "https://registry.yarnpkg.com/d3-zoom/-/d3-zoom-3.0.0.tgz"; + sha512 = "b8AmV3kfQaqWAuacbPuNbL6vahnOJflOhexLzMMNLga62+/nh0JzvJ0aO/5a5MVgUFGS7Hu1P9P03o3fJkDCyw=="; + }; + } + { name = "d3___d3_3.5.17.tgz"; path = fetchurl { name = "d3___d3_3.5.17.tgz"; url = "https://registry.yarnpkg.com/d3/-/d3-3.5.17.tgz"; - sha1 = "vEZ0gAQ3iyGjYMn8fPUjF5B2L7g="; + sha512 = "yFk/2idb8OHPKkbAL8QaOaqENNoMhIaSHZerk3oQsECwkObkCpJyjYwCe+OHiq6UEdhe1m8ZGARRRO3ljFjlKg=="; }; } { @@ -4674,14 +5186,6 @@ }; } { - name = "debug___debug_2.6.9.tgz"; - path = fetchurl { - name = "debug___debug_2.6.9.tgz"; - url = "https://registry.yarnpkg.com/debug/-/debug-2.6.9.tgz"; - sha512 = "bC7ElrdJaJnPbAP+1EotYvqZsb3ecl5wi6Bfi6BJTUcNowp6cvspg0jXznRTKDjm/E7AdgFBVeAPVMNcKGsHMA=="; - }; - } - { name = "debug___debug_3.2.7.tgz"; path = fetchurl { name = "debug___debug_3.2.7.tgz"; @@ -4738,11 +5242,19 @@ }; } { - name = "decode_uri_component___decode_uri_component_0.2.0.tgz"; + name = "decode_named_character_reference___decode_named_character_reference_1.0.2.tgz"; path = fetchurl { - name = "decode_uri_component___decode_uri_component_0.2.0.tgz"; - url = "https://registry.yarnpkg.com/decode-uri-component/-/decode-uri-component-0.2.0.tgz"; - sha1 = "6zkTMzRYd1y4TNGh+uBiEGu4dUU="; + name = "decode_named_character_reference___decode_named_character_reference_1.0.2.tgz"; + url = "https://registry.yarnpkg.com/decode-named-character-reference/-/decode-named-character-reference-1.0.2.tgz"; + sha512 = "O8x12RzrUF8xyVcY0KJowWsmaJxQbmy0/EtnNtHRpsOcT7dFk5W598coHqBVpmWo1oQQfsCqfCmkZN5DJrZVdg=="; + }; + } + { + name = "decode_uri_component___decode_uri_component_0.2.2.tgz"; + path = fetchurl { + name = "decode_uri_component___decode_uri_component_0.2.2.tgz"; + url = "https://registry.yarnpkg.com/decode-uri-component/-/decode-uri-component-0.2.2.tgz"; + sha512 = "FqUYQ+8o158GyGTrMFJms9qh3CqTKvAqgqsTnkLI8sKu0028orqBhxNMFkFen0zGyg6epACD32pjVk58ngIErQ=="; }; } { @@ -4802,6 +5314,14 @@ }; } { + name = "dequal___dequal_2.0.3.tgz"; + path = fetchurl { + name = "dequal___dequal_2.0.3.tgz"; + url = "https://registry.yarnpkg.com/dequal/-/dequal-2.0.3.tgz"; + sha512 = "0je+qPKHEMohvfRTCEo3CrPG6cAzAYgmzKyxRiYSSDkS6eGJdyVJm7WaYA5ECaAD9wLB2T4EEeymA5aFVcYXCA=="; + }; + } + { name = "detect_newline___detect_newline_3.1.0.tgz"; path = fetchurl { name = "detect_newline___detect_newline_3.1.0.tgz"; @@ -4842,6 +5362,14 @@ }; } { + name = "diff___diff_5.1.0.tgz"; + path = fetchurl { + name = "diff___diff_5.1.0.tgz"; + url = "https://registry.yarnpkg.com/diff/-/diff-5.1.0.tgz"; + sha512 = "D+mk+qE8VC/PAUrlAU34N+VfXev0ghe5ywmpqrawphmVZc1bEfn56uo9qpyGp1p4xpzOHkSW4ztBd6L7Xx4ACw=="; + }; + } + { name = "dir_glob___dir_glob_3.0.1.tgz"; path = fetchurl { name = "dir_glob___dir_glob_3.0.1.tgz"; @@ -4994,14 +5522,6 @@ }; } { - name = "electron_to_chromium___electron_to_chromium_1.3.752.tgz"; - path = fetchurl { - name = "electron_to_chromium___electron_to_chromium_1.3.752.tgz"; - url = "https://registry.yarnpkg.com/electron-to-chromium/-/electron-to-chromium-1.3.752.tgz"; - sha512 = 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"es_abstract___es_abstract_1.21.2.tgz"; + path = fetchurl { + name = "es_abstract___es_abstract_1.21.2.tgz"; + url = "https://registry.yarnpkg.com/es-abstract/-/es-abstract-1.21.2.tgz"; + sha512 = "y/B5POM2iBnIxCiernH1G7rC9qQoM77lLIMQLuob0zhp8C56Po81+2Nj0WFKnd0pNReDTnkYryc+zhOzpEIROg=="; + }; + } + { name = "es_module_lexer___es_module_lexer_0.9.3.tgz"; path = fetchurl { name = "es_module_lexer___es_module_lexer_0.9.3.tgz"; @@ -5130,6 +5658,14 @@ }; } { + name = "es_set_tostringtag___es_set_tostringtag_2.0.1.tgz"; + path = fetchurl { + name = "es_set_tostringtag___es_set_tostringtag_2.0.1.tgz"; + url = "https://registry.yarnpkg.com/es-set-tostringtag/-/es-set-tostringtag-2.0.1.tgz"; + sha512 = "g3OMbtlwY3QewlqAiMLI47KywjWZoEytKr8pf6iTC8uJq5bIAH52Z9pnQ8pVL6whrCto53JZDuUIsifGeLorTg=="; + }; + } + { name = "es_shim_unscopables___es_shim_unscopables_1.0.0.tgz"; path = fetchurl { name = "es_shim_unscopables___es_shim_unscopables_1.0.0.tgz"; @@ -5186,6 +5722,14 @@ }; } { + name = "escape_string_regexp___escape_string_regexp_5.0.0.tgz"; + path = fetchurl { + name = "escape_string_regexp___escape_string_regexp_5.0.0.tgz"; + url = "https://registry.yarnpkg.com/escape-string-regexp/-/escape-string-regexp-5.0.0.tgz"; + sha512 = "/veY75JbMK4j1yjvuUxuVsiS/hr/4iHs9FTT6cgTexxdE0Ly/glccBAkloH/DofkjRbZU3bnoj38mOmhkZ0lHw=="; + }; + } + { name = "escodegen___escodegen_2.0.0.tgz"; path = fetchurl { name = "escodegen___escodegen_2.0.0.tgz"; @@ -5218,19 +5762,27 @@ }; } { - name = "eslint_import_resolver_node___eslint_import_resolver_node_0.3.6.tgz"; + name = "eslint_config_prettier___eslint_config_prettier_8.6.0.tgz"; path = fetchurl { - name = "eslint_import_resolver_node___eslint_import_resolver_node_0.3.6.tgz"; - url = "https://registry.yarnpkg.com/eslint-import-resolver-node/-/eslint-import-resolver-node-0.3.6.tgz"; - sha512 = "0En0w03NRVMn9Uiyn8YRPDKvWjxCWkslUEhGNTdGx15RvPJYQ+lbOlqrlNI2vEAs4pDYK4f/HN2TbDmk5TP0iw=="; + name = "eslint_config_prettier___eslint_config_prettier_8.6.0.tgz"; + url = "https://registry.yarnpkg.com/eslint-config-prettier/-/eslint-config-prettier-8.6.0.tgz"; + sha512 = "bAF0eLpLVqP5oEVUFKpMA+NnRFICwn9X8B5jrR9FcqnYBuPbqWEjTEspPWMj5ye6czoSLDweCzSo3Ko7gGrZaA=="; }; } { - name = "eslint_module_utils___eslint_module_utils_2.7.3.tgz"; + name = "eslint_import_resolver_node___eslint_import_resolver_node_0.3.7.tgz"; path = fetchurl { - name = "eslint_module_utils___eslint_module_utils_2.7.3.tgz"; - url = "https://registry.yarnpkg.com/eslint-module-utils/-/eslint-module-utils-2.7.3.tgz"; - sha512 = "088JEC7O3lDZM9xGe0RerkOMd0EjFl+Yvd1jPWIkMT5u3H9+HC34mWWPnqPrN13gieT9pBOO+Qt07Nb/6TresQ=="; + name = "eslint_import_resolver_node___eslint_import_resolver_node_0.3.7.tgz"; + url = "https://registry.yarnpkg.com/eslint-import-resolver-node/-/eslint-import-resolver-node-0.3.7.tgz"; + sha512 = "gozW2blMLJCeFpBwugLTGyvVjNoeo1knonXAcatC6bjPBZitotxdWf7Gimr25N4c0AAOo4eOUfaG82IJPDpqCA=="; + }; + } + { + name = "eslint_module_utils___eslint_module_utils_2.7.4.tgz"; + path = fetchurl { + name = "eslint_module_utils___eslint_module_utils_2.7.4.tgz"; + url = "https://registry.yarnpkg.com/eslint-module-utils/-/eslint-module-utils-2.7.4.tgz"; + sha512 = "j4GT+rqzCoRKHwURX7pddtIPGySnX9Si/cgMI5ztrcqOPtk5dDEeZ34CQVPphnqkJytlc97Vuk05Um2mJ3gEQA=="; }; } { @@ -5250,11 +5802,11 @@ }; } { - name = "eslint_plugin_import___eslint_plugin_import_2.26.0.tgz"; + name = "eslint_plugin_import___eslint_plugin_import_2.27.5.tgz"; path = fetchurl { - name = "eslint_plugin_import___eslint_plugin_import_2.26.0.tgz"; - url = "https://registry.yarnpkg.com/eslint-plugin-import/-/eslint-plugin-import-2.26.0.tgz"; - sha512 = "hYfi3FXaM8WPLf4S1cikh/r4IxnO6zrhZbEGz2b660EJRbuxgpDS5gkCuYgGWg2xxh2rBuIr4Pvhve/7c31koA=="; + name = "eslint_plugin_import___eslint_plugin_import_2.27.5.tgz"; + url = "https://registry.yarnpkg.com/eslint-plugin-import/-/eslint-plugin-import-2.27.5.tgz"; + sha512 = "LmEt3GVofgiGuiE+ORpnvP+kAm3h6MLZJ4Q5HCyHADofsb4VzXFsRiWj3c0OFiV+3DWFh0qg3v9gcPlfc3zRow=="; }; } { @@ -5554,6 +6106,30 @@ }; } { + name = "fbemitter___fbemitter_3.0.0.tgz"; + path = fetchurl { + name = "fbemitter___fbemitter_3.0.0.tgz"; + url = "https://registry.yarnpkg.com/fbemitter/-/fbemitter-3.0.0.tgz"; + sha512 = "KWKaceCwKQU0+HPoop6gn4eOHk50bBv/VxjJtGMfwmJt3D29JpN4H4eisCtIPA+a8GVBam+ldMMpMjJUvpDyHw=="; + }; + } + { + name = "fbjs_css_vars___fbjs_css_vars_1.0.2.tgz"; + path = fetchurl { + name = "fbjs_css_vars___fbjs_css_vars_1.0.2.tgz"; + url = "https://registry.yarnpkg.com/fbjs-css-vars/-/fbjs-css-vars-1.0.2.tgz"; + sha512 = "b2XGFAFdWZWg0phtAWLHCk836A1Xann+I+Dgd3Gk64MHKZO44FfoD1KxyvbSh0qZsIoXQGGlVztIY+oitJPpRQ=="; + }; + } + { + name = "fbjs___fbjs_3.0.4.tgz"; + path = fetchurl { + name = "fbjs___fbjs_3.0.4.tgz"; + url = "https://registry.yarnpkg.com/fbjs/-/fbjs-3.0.4.tgz"; + sha512 = "ucV0tDODnGV3JCnnkmoszb5lf4bNpzjv80K41wd4k798Etq+UYD0y0TIfalLjZoKgjive6/adkRnszwapiDgBQ=="; + }; + } + { name = "file_entry_cache___file_entry_cache_6.0.1.tgz"; path = fetchurl { name = "file_entry_cache___file_entry_cache_6.0.1.tgz"; @@ -5586,19 +6162,19 @@ }; } { - name = "find_root___find_root_1.1.0.tgz"; + name = "find_cache_dir___find_cache_dir_3.3.2.tgz"; path = fetchurl { - name = "find_root___find_root_1.1.0.tgz"; - url = "https://registry.yarnpkg.com/find-root/-/find-root-1.1.0.tgz"; - sha512 = "NKfW6bec6GfKc0SGx1e07QZY9PE99u0Bft/0rzSD5k3sO/vwkVUpDUKVm5Gpp5Ue3YfShPFTX2070tDs5kB9Ng=="; + name = "find_cache_dir___find_cache_dir_3.3.2.tgz"; + url = "https://registry.yarnpkg.com/find-cache-dir/-/find-cache-dir-3.3.2.tgz"; + sha512 = "wXZV5emFEjrridIgED11OoUKLxiYjAcqot/NJdAkOhlJ+vGzwhOAfcG5OX1jP+S0PcjEn8bdMJv+g2jwQ3Onig=="; }; } { - name = "find_up___find_up_2.1.0.tgz"; + name = "find_root___find_root_1.1.0.tgz"; path = fetchurl { - name = "find_up___find_up_2.1.0.tgz"; - url = "https://registry.yarnpkg.com/find-up/-/find-up-2.1.0.tgz"; - sha1 = "RdG35QbHF93UgndaK3eSCjwMV6c="; + name = "find_root___find_root_1.1.0.tgz"; + url = "https://registry.yarnpkg.com/find-root/-/find-root-1.1.0.tgz"; + sha512 = "NKfW6bec6GfKc0SGx1e07QZY9PE99u0Bft/0rzSD5k3sO/vwkVUpDUKVm5Gpp5Ue3YfShPFTX2070tDs5kB9Ng=="; }; } { @@ -5626,6 +6202,14 @@ }; } { + name = "flux___flux_4.0.3.tgz"; + path = fetchurl { + name = "flux___flux_4.0.3.tgz"; + url = "https://registry.yarnpkg.com/flux/-/flux-4.0.3.tgz"; + sha512 = "yKAbrp7JhZhj6uiT1FTuVMlIAT1J4jqEyBpFApi1kxpGZCvacMVc/t1pMQyotqHhAgvoE3bNvAykhCo2CLjnYw=="; + }; + } + { name = "focus_lock___focus_lock_0.11.2.tgz"; path = fetchurl { name = "focus_lock___focus_lock_0.11.2.tgz"; @@ -5642,6 +6226,14 @@ }; } { + name = "for_each___for_each_0.3.3.tgz"; + path = fetchurl { + name = "for_each___for_each_0.3.3.tgz"; + url = "https://registry.yarnpkg.com/for-each/-/for-each-0.3.3.tgz"; + sha512 = "jqYfLp7mo9vIyQf8ykW2v7A+2N4QjeCeI5+Dz9XraiO1ign81wjiH7Fb9vSOWvQfNtmSa4H2RoQTrrXivdUZmw=="; + }; + } + { name = "foreach___foreach_2.0.5.tgz"; path = fetchurl { name = "foreach___foreach_2.0.5.tgz"; @@ -5762,6 +6354,14 @@ }; } { + name = "get_intrinsic___get_intrinsic_1.2.0.tgz"; + path = fetchurl { + name = "get_intrinsic___get_intrinsic_1.2.0.tgz"; + url = "https://registry.yarnpkg.com/get-intrinsic/-/get-intrinsic-1.2.0.tgz"; + sha512 = "L049y6nFOuom5wGyRc3/gdTLO94dySVKRACj1RmJZBQXlbTMhtNIgkWkUHq+jYmZvKf14EW1EoJnnjbmoHij0Q=="; + }; + } + { name = "get_nonce___get_nonce_1.0.1.tgz"; path = fetchurl { name = "get_nonce___get_nonce_1.0.1.tgz"; @@ -5882,6 +6482,14 @@ }; } { + name = "globalthis___globalthis_1.0.3.tgz"; + path = fetchurl { + name = "globalthis___globalthis_1.0.3.tgz"; + url = "https://registry.yarnpkg.com/globalthis/-/globalthis-1.0.3.tgz"; + sha512 = "sFdI5LyBiNTHjRd7cGPWapiHWMOXKyuBNX/cWJ3NfzrZQVa8GI/8cofCl74AOVqq9W5kNmguTIzJ/1s2gyI9wA=="; + }; + } + { name = "globalyzer___globalyzer_0.1.0.tgz"; path = fetchurl { name = "globalyzer___globalyzer_0.1.0.tgz"; @@ -5930,19 +6538,11 @@ }; } { - name = "graceful_fs___graceful_fs_4.2.6.tgz"; - path = fetchurl { - name = "graceful_fs___graceful_fs_4.2.6.tgz"; - url = "https://registry.yarnpkg.com/graceful-fs/-/graceful-fs-4.2.6.tgz"; - sha512 = "nTnJ528pbqxYanhpDYsi4Rd8MAeaBA67+RZ10CM1m3bTAVFEDcd5AuA4a6W5YkGZ1iNXHzZz8T6TBKLeBuNriQ=="; - }; - } - { - name = "graceful_fs___graceful_fs_4.2.8.tgz"; + name = "gopd___gopd_1.0.1.tgz"; path = fetchurl { - name = "graceful_fs___graceful_fs_4.2.8.tgz"; - url = "https://registry.yarnpkg.com/graceful-fs/-/graceful-fs-4.2.8.tgz"; - sha512 = "qkIilPUYcNhJpd33n0GBXTB1MMPp14TxEsEs0pTrsSVucApsYzW5V+Q8Qxhik6KU3evy+qkAAowTByymK0avdg=="; + name = "gopd___gopd_1.0.1.tgz"; + url = "https://registry.yarnpkg.com/gopd/-/gopd-1.0.1.tgz"; + sha512 = "d65bNlIadxvpb/A2abVdlqKqV563juRnZ1Wtk6s1sIR8uNsXR70xqIzVqxVf1eTqDunwT2MkczEeaezCKTZhwA=="; }; } { @@ -6010,6 +6610,14 @@ }; } { + name = "has_proto___has_proto_1.0.1.tgz"; + path = fetchurl { + name = "has_proto___has_proto_1.0.1.tgz"; + url = "https://registry.yarnpkg.com/has-proto/-/has-proto-1.0.1.tgz"; + sha512 = "7qE+iP+O+bgF9clE5+UoBFzE65mlBiVj3tKCrlNQ0Ogwm0BjpT/gK4SlLYDMybDh5I3TCTKnPPa0oMG7JDYrhg=="; + }; + } + { name = "has_symbols___has_symbols_1.0.2.tgz"; path = fetchurl { name = "has_symbols___has_symbols_1.0.2.tgz"; @@ -6042,6 +6650,14 @@ }; } { + name = "hast_util_whitespace___hast_util_whitespace_2.0.0.tgz"; + path = fetchurl { + name = "hast_util_whitespace___hast_util_whitespace_2.0.0.tgz"; + url = "https://registry.yarnpkg.com/hast-util-whitespace/-/hast-util-whitespace-2.0.0.tgz"; + sha512 = "Pkw+xBHuV6xFeJprJe2BBEoDV+AvQySaz3pPDRUs5PNZEMQjpXJJueqrpcHIXxnWTcAGi/UOCgVShlkY6kLoqg=="; + }; + } + { name = "hey_listen___hey_listen_1.0.8.tgz"; path = fetchurl { name = "hey_listen___hey_listen_1.0.8.tgz"; @@ -6274,6 +6890,14 @@ }; } { + name = "inline_style_parser___inline_style_parser_0.1.1.tgz"; + path = fetchurl { + name = "inline_style_parser___inline_style_parser_0.1.1.tgz"; + url = "https://registry.yarnpkg.com/inline-style-parser/-/inline-style-parser-0.1.1.tgz"; + sha512 = "7NXolsK4CAS5+xvdj5OMMbI962hU/wvwoxk+LWR9Ek9bVtyuuYScDN6eS0rUm6TxApFpw7CX1o4uJzcd4AyD3Q=="; + }; + } + { name = "internal_slot___internal_slot_1.0.3.tgz"; path = fetchurl { name = "internal_slot___internal_slot_1.0.3.tgz"; @@ -6282,6 +6906,14 @@ }; } { + name = "internal_slot___internal_slot_1.0.5.tgz"; + path = fetchurl { + name = "internal_slot___internal_slot_1.0.5.tgz"; + url = "https://registry.yarnpkg.com/internal-slot/-/internal-slot-1.0.5.tgz"; + sha512 = "Y+R5hJrzs52QCG2laLn4udYVnxsfny9CpOhNhUvk/SSSVyF6T27FzRbF0sroPidSu3X8oEAkOn2K804mjpt6UQ=="; + }; + } + { name = "internmap___internmap_1.0.1.tgz"; path = fetchurl { name = "internmap___internmap_1.0.1.tgz"; @@ -6322,6 +6954,14 @@ }; } { + name = "is_array_buffer___is_array_buffer_3.0.2.tgz"; + path = fetchurl { + name = "is_array_buffer___is_array_buffer_3.0.2.tgz"; + url = "https://registry.yarnpkg.com/is-array-buffer/-/is-array-buffer-3.0.2.tgz"; + sha512 = "y+FyyR/w8vfIRq4eQcM1EYgSTnmHXPqaF+IgzgraytCFq5Xh8lllDVmAZolPJiZttZLeFSINPYMaEJ7/vWUa1w=="; + }; + } + { name = "is_arrayish___is_arrayish_0.2.1.tgz"; path = fetchurl { name = "is_arrayish___is_arrayish_0.2.1.tgz"; @@ -6330,6 +6970,14 @@ }; } { + name = "is_arrayish___is_arrayish_0.3.2.tgz"; + path = fetchurl { + name = "is_arrayish___is_arrayish_0.3.2.tgz"; + url = "https://registry.yarnpkg.com/is-arrayish/-/is-arrayish-0.3.2.tgz"; + sha512 = "eVRqCvVlZbuw3GrM63ovNSNAeA1K16kaR/LRY/92w0zxQ5/1YzwblUX652i4Xs9RwAGjW9d9y6X88t8OaAJfWQ=="; + }; + } + { name = "is_bigint___is_bigint_1.0.2.tgz"; path = fetchurl { name = "is_bigint___is_bigint_1.0.2.tgz"; @@ -6354,6 +7002,14 @@ }; } { + name = "is_callable___is_callable_1.2.7.tgz"; + path = fetchurl { + name = "is_callable___is_callable_1.2.7.tgz"; + url = "https://registry.yarnpkg.com/is-callable/-/is-callable-1.2.7.tgz"; + sha512 = "1BC0BVFhS/p0qtw6enp8e+8OD0UrK0oFLztSjNzhcKA3WDuJxxAPXzPuPtKkjEY9UUoEWlX/8fgKeu2S8i9JTA=="; + }; + } + { name = "is_callable___is_callable_1.2.3.tgz"; path = fetchurl { name = "is_callable___is_callable_1.2.3.tgz"; @@ -6370,6 +7026,14 @@ }; } { + name = "is_core_module___is_core_module_2.11.0.tgz"; + path = fetchurl { + name = "is_core_module___is_core_module_2.11.0.tgz"; + url = "https://registry.yarnpkg.com/is-core-module/-/is-core-module-2.11.0.tgz"; + sha512 = "RRjxlvLDkD1YJwDbroBHMb+cukurkDWNyHx7D3oNB5x9rb5ogcksMC5wHCadcXoo67gVr/+3GFySh3134zi6rw=="; + }; + } + { name = "is_core_module___is_core_module_2.4.0.tgz"; path = fetchurl { name = "is_core_module___is_core_module_2.4.0.tgz"; @@ -6522,6 +7186,14 @@ }; } { + name = "is_plain_obj___is_plain_obj_4.1.0.tgz"; + path = fetchurl { + name = "is_plain_obj___is_plain_obj_4.1.0.tgz"; + url = "https://registry.yarnpkg.com/is-plain-obj/-/is-plain-obj-4.1.0.tgz"; + sha512 = 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"prop_types___prop_types_15.7.2.tgz"; + path = fetchurl { + name = "prop_types___prop_types_15.7.2.tgz"; + url = "https://registry.yarnpkg.com/prop-types/-/prop-types-15.7.2.tgz"; + sha512 = "8QQikdH7//R2vurIJSutZ1smHYTcLpRWEOlHnzcWHmBYrOGUysKwSsrC89BCiFj3CbrfJ/nXFdJepOVrY1GCHQ=="; + }; + } + { name = "propagate___propagate_2.0.1.tgz"; path = fetchurl { name = "propagate___propagate_2.0.1.tgz"; @@ -8922,6 +9906,14 @@ }; } { + name = "property_information___property_information_6.2.0.tgz"; + path = fetchurl { + name = "property_information___property_information_6.2.0.tgz"; + url = "https://registry.yarnpkg.com/property-information/-/property-information-6.2.0.tgz"; + sha512 = "kma4U7AFCTwpqq5twzC1YVIDXSqg6qQK6JN0smOw8fgRy1OkMi0CYSzFmsy6dnqSenamAtj0CyXMUJ1Mf6oROg=="; + }; + } + { name = "psl___psl_1.8.0.tgz"; path = fetchurl { name = "psl___psl_1.8.0.tgz"; @@ -8938,6 +9930,14 @@ }; } { + name = "pure_color___pure_color_1.3.0.tgz"; + path = fetchurl { + name = "pure_color___pure_color_1.3.0.tgz"; + url = "https://registry.yarnpkg.com/pure-color/-/pure-color-1.3.0.tgz"; + sha512 = "QFADYnsVoBMw1srW7OVKEYjG+MbIa49s54w1MA1EDY6r2r/sTcKKYqRX1f4GYvnXP7eN/Pe9HFcX+hwzmrXRHA=="; + }; + } + { name = "queue_microtask___queue_microtask_1.2.3.tgz"; path = fetchurl { name = "queue_microtask___queue_microtask_1.2.3.tgz"; @@ -8970,6 +9970,14 @@ }; } { + name = "react_base16_styling___react_base16_styling_0.6.0.tgz"; + path = fetchurl { + name = "react_base16_styling___react_base16_styling_0.6.0.tgz"; + url = "https://registry.yarnpkg.com/react-base16-styling/-/react-base16-styling-0.6.0.tgz"; + sha512 = "yvh/7CArceR/jNATXOKDlvTnPKPmGZz7zsenQ3jUwLzHkNUR0CvY3yGYJbWJ/nnxsL8Sgmt5cO3/SILVuPO6TQ=="; + }; + } + { name = "react_clientside_effect___react_clientside_effect_1.2.6.tgz"; path = fetchurl { name = "react_clientside_effect___react_clientside_effect_1.2.6.tgz"; @@ -9026,6 +10034,38 @@ }; } { + name = "react_is___react_is_18.2.0.tgz"; + path = fetchurl { + name = "react_is___react_is_18.2.0.tgz"; + url = "https://registry.yarnpkg.com/react-is/-/react-is-18.2.0.tgz"; + sha512 = "xWGDIW6x921xtzPkhiULtthJHoJvBbF3q26fzloPCK0hsvxtPVelvftw3zjbHWSkR2km9Z+4uxbDDK/6Zw9B8w=="; + }; + } + { + name = "react_json_view___react_json_view_1.21.3.tgz"; + path = fetchurl { + name = "react_json_view___react_json_view_1.21.3.tgz"; + url = "https://registry.yarnpkg.com/react-json-view/-/react-json-view-1.21.3.tgz"; + sha512 = "13p8IREj9/x/Ye4WI/JpjhoIwuzEgUAtgJZNBJckfzJt1qyh24BdTm6UQNGnyTq9dapQdrqvquZTo3dz1X6Cjw=="; + }; + } + { + name = "react_lifecycles_compat___react_lifecycles_compat_3.0.4.tgz"; + path = fetchurl { + name = "react_lifecycles_compat___react_lifecycles_compat_3.0.4.tgz"; + url = "https://registry.yarnpkg.com/react-lifecycles-compat/-/react-lifecycles-compat-3.0.4.tgz"; + sha512 = "fBASbA6LnOU9dOU2eW7aQ8xmYBSXUIWr+UmF9b1efZBazGNO+rcXT/icdKnYm2pTwcRylVUYwW7H1PHfLekVzA=="; + }; + } + { + name = "react_markdown___react_markdown_8.0.4.tgz"; + path = fetchurl { + name = "react_markdown___react_markdown_8.0.4.tgz"; + url = "https://registry.yarnpkg.com/react-markdown/-/react-markdown-8.0.4.tgz"; + sha512 = "2oxHa6oDxc1apg/Gnc1Goh06t3B617xeywqI/92wmDV9FELI6ayRkwge7w7DoEqM0gRpZGTNU6xQG+YpJISnVg=="; + }; + } + { name = "react_query___react_query_3.39.1.tgz"; path = fetchurl { name = "react_query___react_query_3.39.1.tgz"; @@ -9098,6 +10138,14 @@ }; } { + name = "react_textarea_autosize___react_textarea_autosize_8.3.4.tgz"; + path = fetchurl { + name = "react_textarea_autosize___react_textarea_autosize_8.3.4.tgz"; + url = "https://registry.yarnpkg.com/react-textarea-autosize/-/react-textarea-autosize-8.3.4.tgz"; + sha512 = "CdtmP8Dc19xL8/R6sWvtknD/eCXkQr30dtvC4VmGInhRsfF8X/ihXCq6+9l9qbxmKRiq407/7z5fxE7cVWQNgQ=="; + }; + } + { name = "react_transition_group___react_transition_group_4.4.2.tgz"; path = fetchurl { name = "react_transition_group___react_transition_group_4.4.2.tgz"; @@ -9114,6 +10162,14 @@ }; } { + name = "reactflow___reactflow_11.4.0.tgz"; + path = fetchurl { + name = "reactflow___reactflow_11.4.0.tgz"; + url = "https://registry.yarnpkg.com/reactflow/-/reactflow-11.4.0.tgz"; + sha512 = "Y+LZ3XZX7UejW4vukeyLwDDfqNT0RxyNNSHD1FJOIu2IvyVMkj+wKTcbp3ehm7brBkMOOaPyugcEWlLwFXcrjg=="; + }; + } + { name = "read_pkg_up___read_pkg_up_7.0.1.tgz"; path = fetchurl { name = "read_pkg_up___read_pkg_up_7.0.1.tgz"; @@ -9194,6 +10250,14 @@ }; } { + name = "regenerator_runtime___regenerator_runtime_0.13.11.tgz"; + path = fetchurl { + name = "regenerator_runtime___regenerator_runtime_0.13.11.tgz"; + url = "https://registry.yarnpkg.com/regenerator-runtime/-/regenerator-runtime-0.13.11.tgz"; + sha512 = "kY1AZVr2Ra+t+piVaJ4gxaFaReZVH40AKNo7UCX6W+dEwBo/2oZJzqfuN1qLq1oL45o56cPaTXELwrTh8Fpggg=="; + }; + } + { name = "regenerator_runtime___regenerator_runtime_0.13.9.tgz"; path = fetchurl { name = "regenerator_runtime___regenerator_runtime_0.13.9.tgz"; @@ -9250,6 +10314,22 @@ }; } { + name = "remark_gfm___remark_gfm_3.0.1.tgz"; + path = fetchurl { + name = "remark_gfm___remark_gfm_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/remark-gfm/-/remark-gfm-3.0.1.tgz"; + sha512 = "lEFDoi2PICJyNrACFOfDD3JlLkuSbOa5Wd8EPt06HUdptv8Gn0bxYTdbU/XXQ3swAPkEaGxxPN9cbnMHvVu1Ig=="; + }; + } + { + name = "remark_parse___remark_parse_10.0.1.tgz"; + path = fetchurl { + name = "remark_parse___remark_parse_10.0.1.tgz"; + url = "https://registry.yarnpkg.com/remark-parse/-/remark-parse-10.0.1.tgz"; + sha512 = "1fUyHr2jLsVOkhbvPRBJ5zTKZZyD6yZzYaWCS6BPBdQ8vEMBCH+9zNCDA6tET/zHCi/jLqjCWtlJZUPk+DbnFw=="; + }; + } + { name = "remark_parse___remark_parse_9.0.0.tgz"; path = fetchurl { name = "remark_parse___remark_parse_9.0.0.tgz"; @@ -9258,6 +10338,14 @@ }; } { + name = "remark_rehype___remark_rehype_10.1.0.tgz"; + path = fetchurl { + name = "remark_rehype___remark_rehype_10.1.0.tgz"; + url = "https://registry.yarnpkg.com/remark-rehype/-/remark-rehype-10.1.0.tgz"; + sha512 = 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"sade___sade_1.8.1.tgz"; + url = "https://registry.yarnpkg.com/sade/-/sade-1.8.1.tgz"; + sha512 = "xal3CZX1Xlo/k4ApwCFrHVACi9fBqJ7V+mwhBsuf/1IOKbBy098Fex+Wa/5QMubw09pSZ/u8EY8PWgevJsXp1A=="; }; } { @@ -9418,6 +10522,14 @@ }; } { + name = "safe_regex_test___safe_regex_test_1.0.0.tgz"; + path = fetchurl { + name = "safe_regex_test___safe_regex_test_1.0.0.tgz"; + url = "https://registry.yarnpkg.com/safe-regex-test/-/safe-regex-test-1.0.0.tgz"; + sha512 = "JBUUzyOgEwXQY1NuPtvcj/qcBDbDmEvWufhlnXZIm75DEHp+afM1r1ujJpJsV/gSM4t59tpDyPi1sd6ZaPFfsA=="; + }; + } + { name = "safer_buffer___safer_buffer_2.1.2.tgz"; path = fetchurl { name = "safer_buffer___safer_buffer_2.1.2.tgz"; @@ -9458,14 +10570,6 @@ }; } { - name = "schema_utils___schema_utils_3.0.0.tgz"; - path = fetchurl { - name = "schema_utils___schema_utils_3.0.0.tgz"; - url = "https://registry.yarnpkg.com/schema-utils/-/schema-utils-3.0.0.tgz"; - sha512 = 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"shallow_clone___shallow_clone_3.0.1.tgz"; path = fetchurl { name = "shallow_clone___shallow_clone_3.0.1.tgz"; @@ -9634,6 +10754,14 @@ }; } { + name = "simple_swizzle___simple_swizzle_0.2.2.tgz"; + path = fetchurl { + name = "simple_swizzle___simple_swizzle_0.2.2.tgz"; + url = "https://registry.yarnpkg.com/simple-swizzle/-/simple-swizzle-0.2.2.tgz"; + sha512 = "JA//kQgZtbuY83m+xT+tXJkmJncGMTFT+C+g2h2R9uxkYIrE2yy9sgmcLhCnw57/WSD+Eh3J97FPEDFnbXnDUg=="; + }; + } + { name = "sisteransi___sisteransi_1.0.5.tgz"; path = fetchurl { name = "sisteransi___sisteransi_1.0.5.tgz"; @@ -9674,14 +10802,6 @@ }; } { - name = "source_map_js___source_map_js_0.6.2.tgz"; - path = fetchurl { - name = "source_map_js___source_map_js_0.6.2.tgz"; - url = "https://registry.yarnpkg.com/source-map-js/-/source-map-js-0.6.2.tgz"; - sha512 = "/3GptzWzu0+0MBQFrDKzw/DvvMTUORvgY6k6jd/VS6iCR4RDTKWH6v6WPwQoUO8667uQEf9Oe38DxAYWY5F/Ug=="; - }; - } - { name = "source_map_js___source_map_js_1.0.2.tgz"; path = fetchurl { name = "source_map_js___source_map_js_1.0.2.tgz"; @@ -9730,6 +10850,14 @@ }; } { + name = "space_separated_tokens___space_separated_tokens_2.0.2.tgz"; + path = fetchurl { + name = "space_separated_tokens___space_separated_tokens_2.0.2.tgz"; + url = "https://registry.yarnpkg.com/space-separated-tokens/-/space-separated-tokens-2.0.2.tgz"; + sha512 = "PEGlAwrG8yXGXRjW32fGbg66JAlOAwbObuqVoJpv/mRgoWDQfgH1wDPvtzWyUSNAXBGSk8h755YDbbcEy3SH2Q=="; + }; + } + { name = "spdx_correct___spdx_correct_3.1.1.tgz"; path = fetchurl { name = "spdx_correct___spdx_correct_3.1.1.tgz"; @@ -9818,6 +10946,14 @@ }; } { + name = "streamsearch___streamsearch_1.1.0.tgz"; + path = fetchurl { + name = "streamsearch___streamsearch_1.1.0.tgz"; + url = "https://registry.yarnpkg.com/streamsearch/-/streamsearch-1.1.0.tgz"; + sha512 = "Mcc5wHehp9aXz1ax6bZUyY5afg9u2rv5cqQI3mRrYkGC8rW2hM02jWuwjtL++LS5qinSyhj2QfLyNsuc+VsExg=="; + }; + } + { name = "string_length___string_length_4.0.2.tgz"; path = fetchurl { name = "string_length___string_length_4.0.2.tgz"; @@ -9850,6 +10986,14 @@ }; } { + name = "string.prototype.trim___string.prototype.trim_1.2.7.tgz"; + path = fetchurl { + name = "string.prototype.trim___string.prototype.trim_1.2.7.tgz"; + url = "https://registry.yarnpkg.com/string.prototype.trim/-/string.prototype.trim-1.2.7.tgz"; + sha512 = "p6TmeT1T3411M8Cgg9wBTMRtY2q9+PNy9EV1i2lIXUN/btt763oIfxwN3RR8VU6wHX8j/1CFy0L+YuThm6bgOg=="; + }; + } + { name = "string.prototype.trimend___string.prototype.trimend_1.0.4.tgz"; path = fetchurl { name = "string.prototype.trimend___string.prototype.trimend_1.0.4.tgz"; @@ -9866,6 +11010,14 @@ }; } { + name = "string.prototype.trimend___string.prototype.trimend_1.0.6.tgz"; + path = fetchurl { + name = "string.prototype.trimend___string.prototype.trimend_1.0.6.tgz"; + url = "https://registry.yarnpkg.com/string.prototype.trimend/-/string.prototype.trimend-1.0.6.tgz"; + sha512 = "JySq+4mrPf9EsDBEDYMOb/lM7XQLulwg5R/m1r0PXEFqrV0qHvl58sdTilSXtKOflCsK2E8jxf+GKC0T07RWwQ=="; + }; + } + { name = "string.prototype.trimstart___string.prototype.trimstart_1.0.4.tgz"; path = fetchurl { name = "string.prototype.trimstart___string.prototype.trimstart_1.0.4.tgz"; @@ -9882,6 +11034,14 @@ }; } { + name = "string.prototype.trimstart___string.prototype.trimstart_1.0.6.tgz"; + path = fetchurl { + name = "string.prototype.trimstart___string.prototype.trimstart_1.0.6.tgz"; + url = "https://registry.yarnpkg.com/string.prototype.trimstart/-/string.prototype.trimstart-1.0.6.tgz"; + sha512 = "omqjMDaY92pbn5HOX7f9IccLA+U1tA9GvtU4JrodiXFfYB7jPzzHpRzpglLAjtUV6bB557zwClJezTqnAiYnQA=="; + }; + } + { name = "string_decoder___string_decoder_1.3.0.tgz"; path = fetchurl { name = "string_decoder___string_decoder_1.3.0.tgz"; @@ -9994,6 +11154,14 @@ }; } { + name = "style_to_object___style_to_object_0.3.0.tgz"; + path = fetchurl { + name = "style_to_object___style_to_object_0.3.0.tgz"; + url = "https://registry.yarnpkg.com/style-to-object/-/style-to-object-0.3.0.tgz"; + sha512 = "CzFnRRXhzWIdItT3OmF8SQfWyahHhjq3HwcMNCNLn+N7klOOqPjMeG/4JSu77D7ypZdGvSzvkrbyeTMizz2VrA=="; + }; + } + { name = "style_value_types___style_value_types_5.0.0.tgz"; path = fetchurl { name = "style_value_types___style_value_types_5.0.0.tgz"; @@ -10010,6 +11178,14 @@ }; } { + name = "stylelint_config_prettier___stylelint_config_prettier_9.0.5.tgz"; + path = fetchurl { + name = "stylelint_config_prettier___stylelint_config_prettier_9.0.5.tgz"; + url = "https://registry.yarnpkg.com/stylelint-config-prettier/-/stylelint-config-prettier-9.0.5.tgz"; + sha512 = "U44lELgLZhbAD/xy/vncZ2Pq8sh2TnpiPvo38Ifg9+zeioR+LAkHu0i6YORIOxFafZoVg0xqQwex6e6F25S5XA=="; + }; + } + { name = "stylelint_config_recommended___stylelint_config_recommended_3.0.0.tgz"; path = fetchurl { name = "stylelint_config_recommended___stylelint_config_recommended_3.0.0.tgz"; @@ -10114,6 +11290,14 @@ }; } { + name = "swagger_ui_dist___swagger_ui_dist_4.1.3.tgz"; + path = fetchurl { + name = "swagger_ui_dist___swagger_ui_dist_4.1.3.tgz"; + url = "https://registry.yarnpkg.com/swagger-ui-dist/-/swagger-ui-dist-4.1.3.tgz"; + sha512 = "WvfPSfAAMlE/sKS6YkW47nX/hA7StmhYnAHc6wWCXNL0oclwLj6UXv0hQCkLnDgvebi0MEV40SJJpVjKUgH1IQ=="; + }; + } + { name = "swagger2openapi___swagger2openapi_7.0.6.tgz"; path = fetchurl { name = "swagger2openapi___swagger2openapi_7.0.6.tgz"; @@ -10282,6 +11466,14 @@ }; } { + name = "trim_lines___trim_lines_3.0.1.tgz"; + path = fetchurl { + name = "trim_lines___trim_lines_3.0.1.tgz"; + url = "https://registry.yarnpkg.com/trim-lines/-/trim-lines-3.0.1.tgz"; + sha512 = "kRj8B+YHZCc9kQYdWfJB2/oUl9rA99qbowYYBtr4ui4mZyAQ2JpvVBd/6U2YloATfqBhBTSMhTpgBHtU0Mf3Rg=="; + }; + } + { name = "trim_newlines___trim_newlines_3.0.1.tgz"; path = fetchurl { name = "trim_newlines___trim_newlines_3.0.1.tgz"; @@ -10298,11 +11490,19 @@ }; } { - name = "tsconfig_paths___tsconfig_paths_3.14.1.tgz"; + name = "trough___trough_2.1.0.tgz"; path = fetchurl { - name = "tsconfig_paths___tsconfig_paths_3.14.1.tgz"; - url = "https://registry.yarnpkg.com/tsconfig-paths/-/tsconfig-paths-3.14.1.tgz"; - sha512 = "fxDhWnFSLt3VuTwtvJt5fpwxBHg5AdKWMsgcPOOIilyjymcYVZoCQF8fvFRezCNfblEXmi+PcM1eYHeOAgXCOQ=="; + name = "trough___trough_2.1.0.tgz"; + url = "https://registry.yarnpkg.com/trough/-/trough-2.1.0.tgz"; + sha512 = "AqTiAOLcj85xS7vQ8QkAV41hPDIJ71XJB4RCUrzo/1GM2CQwhkJGaf9Hgr7BOugMRpgGUrqRg/DrBDl4H40+8g=="; + }; + } + { + name = "tsconfig_paths___tsconfig_paths_3.14.2.tgz"; + path = fetchurl { + name = "tsconfig_paths___tsconfig_paths_3.14.2.tgz"; + url = "https://registry.yarnpkg.com/tsconfig-paths/-/tsconfig-paths-3.14.2.tgz"; + sha512 = "o/9iXgCYc5L/JxCHPe3Hvh8Q/2xm5Z+p18PESBU6Ff33695QnCHBEjcytY2q19ua7Mbl/DavtBOLq+oG0RCL+g=="; }; } { @@ -10418,6 +11618,14 @@ }; } { + name = "typed_array_length___typed_array_length_1.0.4.tgz"; + path = fetchurl { + name = "typed_array_length___typed_array_length_1.0.4.tgz"; + url = "https://registry.yarnpkg.com/typed-array-length/-/typed-array-length-1.0.4.tgz"; + sha512 = "KjZypGq+I/H7HI5HlOoGHkWUUGq+Q0TPhQurLbyrVrvnKTBgzLhIJ7j6J/XTQOi0d1RjyZ0wdas8bKs2p0x3Ng=="; + }; + } + { name = "typedarray_to_buffer___typedarray_to_buffer_3.1.5.tgz"; path = fetchurl { name = "typedarray_to_buffer___typedarray_to_buffer_3.1.5.tgz"; @@ -10434,6 +11642,14 @@ }; } { + name = "ua_parser_js___ua_parser_js_0.7.33.tgz"; + path = fetchurl { + name = "ua_parser_js___ua_parser_js_0.7.33.tgz"; + url = "https://registry.yarnpkg.com/ua-parser-js/-/ua-parser-js-0.7.33.tgz"; + sha512 = "s8ax/CeZdK9R/56Sui0WM6y9OFREJarMRHqLB2EwkovemBxNQ+Bqu8GAsUnVcXKgphb++ghr/B2BZx4mahujPw=="; + }; + } + { name = "unbox_primitive___unbox_primitive_1.0.1.tgz"; path = fetchurl { name = "unbox_primitive___unbox_primitive_1.0.1.tgz"; @@ -10450,11 +11666,11 @@ }; } { - name = "undici___undici_5.9.1.tgz"; + name = "undici___undici_5.19.1.tgz"; path = fetchurl { - name = "undici___undici_5.9.1.tgz"; - url = "https://registry.yarnpkg.com/undici/-/undici-5.9.1.tgz"; - sha512 = "6fB3a+SNnWEm4CJbgo0/CWR8RGcOCQP68SF4X0mxtYTq2VNN8T88NYrWVBAeSX+zb7bny2dx2iYhP3XHi00omg=="; + name = "undici___undici_5.19.1.tgz"; + url = "https://registry.yarnpkg.com/undici/-/undici-5.19.1.tgz"; + sha512 = "YiZ61LPIgY73E7syxCDxxa3LV2yl3sN8spnIuTct60boiiRaE1J8mNWHO8Im2Zi/sFrPusjLlmRPrsyraSqX6A=="; }; } { @@ -10490,6 +11706,14 @@ }; } { + name = "unified___unified_10.1.2.tgz"; + path = fetchurl { + name = "unified___unified_10.1.2.tgz"; + url = "https://registry.yarnpkg.com/unified/-/unified-10.1.2.tgz"; + sha512 = "pUSWAi/RAnVy1Pif2kAoeWNBa3JVrx0MId2LASj8G+7AiHWoKZNTomq6LG326T68U7/e263X6fTdcXIy7XnF7Q=="; + }; + } + { name = "unified___unified_9.2.2.tgz"; path = fetchurl { name = "unified___unified_9.2.2.tgz"; @@ -10514,6 +11738,14 @@ }; } { + name = "unist_builder___unist_builder_3.0.0.tgz"; + path = fetchurl { + name = "unist_builder___unist_builder_3.0.0.tgz"; + url = "https://registry.yarnpkg.com/unist-builder/-/unist-builder-3.0.0.tgz"; + sha512 = "GFxmfEAa0vi9i5sd0R2kcrI9ks0r82NasRq5QHh2ysGngrc6GiqD5CDf1FjPenY4vApmFASBIIlk/jj5J5YbmQ=="; + }; + } + { name = "unist_util_find_all_after___unist_util_find_all_after_3.0.2.tgz"; path = fetchurl { name = "unist_util_find_all_after___unist_util_find_all_after_3.0.2.tgz"; @@ -10522,6 +11754,14 @@ }; } { + name = "unist_util_generated___unist_util_generated_2.0.0.tgz"; + path = fetchurl { + name = "unist_util_generated___unist_util_generated_2.0.0.tgz"; + url = "https://registry.yarnpkg.com/unist-util-generated/-/unist-util-generated-2.0.0.tgz"; + sha512 = "TiWE6DVtVe7Ye2QxOVW9kqybs6cZexNwTwSMVgkfjEReqy/xwGpAXb99OxktoWwmL+Z+Epb0Dn8/GNDYP1wnUw=="; + }; + } + { name = "unist_util_is___unist_util_is_4.1.0.tgz"; path = fetchurl { name = "unist_util_is___unist_util_is_4.1.0.tgz"; @@ -10530,6 +11770,22 @@ }; } { + name = "unist_util_is___unist_util_is_5.1.1.tgz"; + path = fetchurl { + name = "unist_util_is___unist_util_is_5.1.1.tgz"; + url = "https://registry.yarnpkg.com/unist-util-is/-/unist-util-is-5.1.1.tgz"; + sha512 = "F5CZ68eYzuSvJjGhCLPL3cYx45IxkqXSetCcRgUXtbcm50X2L9oOWQlfUfDdAf+6Pd27YDblBfdtmsThXmwpbQ=="; + }; + } + { + name = "unist_util_position___unist_util_position_4.0.3.tgz"; + path = fetchurl { + name = "unist_util_position___unist_util_position_4.0.3.tgz"; + url = "https://registry.yarnpkg.com/unist-util-position/-/unist-util-position-4.0.3.tgz"; + sha512 = "p/5EMGIa1qwbXjA+QgcBXaPWjSnZfQ2Sc3yBEEfgPwsEmJd8Qh+DSk3LGnmOM4S1bY2C0AjmMnB8RuEYxpPwXQ=="; + }; + } + { name = "unist_util_stringify_position___unist_util_stringify_position_2.0.3.tgz"; path = fetchurl { name = "unist_util_stringify_position___unist_util_stringify_position_2.0.3.tgz"; @@ -10538,6 +11794,30 @@ }; } { + name = "unist_util_stringify_position___unist_util_stringify_position_3.0.2.tgz"; + path = fetchurl { + name = "unist_util_stringify_position___unist_util_stringify_position_3.0.2.tgz"; + url = "https://registry.yarnpkg.com/unist-util-stringify-position/-/unist-util-stringify-position-3.0.2.tgz"; + sha512 = "7A6eiDCs9UtjcwZOcCpM4aPII3bAAGv13E96IkawkOAW0OhH+yRxtY0lzo8KiHpzEMfH7Q+FizUmwp8Iqy5EWg=="; + }; + } + { + name = "unist_util_visit_parents___unist_util_visit_parents_5.1.1.tgz"; + path = fetchurl { + name = "unist_util_visit_parents___unist_util_visit_parents_5.1.1.tgz"; + url = "https://registry.yarnpkg.com/unist-util-visit-parents/-/unist-util-visit-parents-5.1.1.tgz"; + sha512 = "gks4baapT/kNRaWxuGkl5BIhoanZo7sC/cUT/JToSRNL1dYoXRFl75d++NkjYk4TAu2uv2Px+l8guMajogeuiw=="; + }; + } + { + name = "unist_util_visit___unist_util_visit_4.1.1.tgz"; + path = fetchurl { + name = "unist_util_visit___unist_util_visit_4.1.1.tgz"; + url = "https://registry.yarnpkg.com/unist-util-visit/-/unist-util-visit-4.1.1.tgz"; + sha512 = "n9KN3WV9k4h1DxYR1LoajgN93wpEi/7ZplVe02IoB4gH5ctI1AaF2670BLHQYbwj+pY83gFtyeySFiyMHJklrg=="; + }; + } + { name = "universalify___universalify_0.1.2.tgz"; path = fetchurl { name = "universalify___universalify_0.1.2.tgz"; @@ -10594,6 +11874,30 @@ }; } { + name = "use_composed_ref___use_composed_ref_1.3.0.tgz"; + path = fetchurl { + name = "use_composed_ref___use_composed_ref_1.3.0.tgz"; + url = "https://registry.yarnpkg.com/use-composed-ref/-/use-composed-ref-1.3.0.tgz"; + sha512 = "GLMG0Jc/jiKov/3Ulid1wbv3r54K9HlMW29IWcDFPEqFkSO2nS0MuefWgMJpeHQ9YJeXDL3ZUF+P3jdXlZX/cQ=="; + }; + } + { + name = "use_isomorphic_layout_effect___use_isomorphic_layout_effect_1.1.2.tgz"; + path = fetchurl { + name = "use_isomorphic_layout_effect___use_isomorphic_layout_effect_1.1.2.tgz"; + url = "https://registry.yarnpkg.com/use-isomorphic-layout-effect/-/use-isomorphic-layout-effect-1.1.2.tgz"; + sha512 = "49L8yCO3iGT/ZF9QttjwLF/ZD9Iwto5LnH5LmEdk/6cFmXddqi2ulF0edxTwjj+7mqvpVVGQWvbXZdn32wRSHA=="; + }; + } + { + name = "use_latest___use_latest_1.2.1.tgz"; + path = fetchurl { + name = "use_latest___use_latest_1.2.1.tgz"; + url = "https://registry.yarnpkg.com/use-latest/-/use-latest-1.2.1.tgz"; + sha512 = "xA+AVm/Wlg3e2P/JiItTziwS7FK92LWrDB0p+hgXloIMuVCeJJ8v6f0eeHyPZaJrM+usM1FkFfbNCrJGs8A/zw=="; + }; + } + { name = "use_sidecar___use_sidecar_1.1.2.tgz"; path = fetchurl { name = "use_sidecar___use_sidecar_1.1.2.tgz"; @@ -10602,6 +11906,14 @@ }; } { + name = "use_sync_external_store___use_sync_external_store_1.2.0.tgz"; + path = fetchurl { + name = "use_sync_external_store___use_sync_external_store_1.2.0.tgz"; + url = "https://registry.yarnpkg.com/use-sync-external-store/-/use-sync-external-store-1.2.0.tgz"; + sha512 = "eEgnFxGQ1Ife9bzYs6VLi8/4X6CObHMw9Qr9tPY43iKwsPw8xE8+EFsf/2cFZ5S3esXgpWgtSCtLNS41F+sKPA=="; + }; + } + { name = "util_deprecate___util_deprecate_1.0.2.tgz"; path = fetchurl { name = "util_deprecate___util_deprecate_1.0.2.tgz"; @@ -10610,6 +11922,14 @@ }; } { + name = "uvu___uvu_0.5.6.tgz"; + path = fetchurl { + name = "uvu___uvu_0.5.6.tgz"; + url = "https://registry.yarnpkg.com/uvu/-/uvu-0.5.6.tgz"; + sha512 = "+g8ENReyr8YsOc6fv/NVJs2vFdHBnBNdfE49rshrTzDWOlUx4Gq7KOS2GD8eqhy2j+Ejq29+SbKH8yjkAqXqoA=="; + }; + } + { name = "v8_compile_cache___v8_compile_cache_2.3.0.tgz"; path = fetchurl { name = "v8_compile_cache___v8_compile_cache_2.3.0.tgz"; @@ -10634,6 +11954,14 @@ }; } { + name = "validator___validator_13.9.0.tgz"; + path = fetchurl { + name = "validator___validator_13.9.0.tgz"; + url = "https://registry.yarnpkg.com/validator/-/validator-13.9.0.tgz"; + sha512 = "B+dGG8U3fdtM0/aNK4/X8CXq/EcxU2WPrPEkJGslb47qyHsxmbggTWK0yEA4qnYVNF+nxNlN88o14hIcPmSIEA=="; + }; + } + { name = "vfile_message___vfile_message_2.0.4.tgz"; path = fetchurl { name = "vfile_message___vfile_message_2.0.4.tgz"; @@ -10642,6 +11970,14 @@ }; } { + name = "vfile_message___vfile_message_3.1.3.tgz"; + path = fetchurl { + name = "vfile_message___vfile_message_3.1.3.tgz"; + url = "https://registry.yarnpkg.com/vfile-message/-/vfile-message-3.1.3.tgz"; + sha512 = "0yaU+rj2gKAyEk12ffdSbBfjnnj+b1zqTBv3OQCTn8yEB02bsPizwdBPrLJjHnK+cU9EMMcUnNv938XcZIkmdA=="; + }; + } + { name = "vfile___vfile_4.2.1.tgz"; path = fetchurl { name = "vfile___vfile_4.2.1.tgz"; @@ -10650,6 +11986,14 @@ }; } { + name = "vfile___vfile_5.3.6.tgz"; + path = fetchurl { + name = "vfile___vfile_5.3.6.tgz"; + url = "https://registry.yarnpkg.com/vfile/-/vfile-5.3.6.tgz"; + sha512 = "ADBsmerdGBs2WYckrLBEmuETSPyTD4TuLxTrw0DvjirxW1ra4ZwkbzG8ndsv3Q57smvHxo677MHaQrY9yxH8cA=="; + }; + } + { name = "w3c_hr_time___w3c_hr_time_1.0.2.tgz"; path = fetchurl { name = "w3c_hr_time___w3c_hr_time_1.0.2.tgz"; @@ -10770,11 +12114,11 @@ }; } { - name = "webpack___webpack_5.73.0.tgz"; + name = "webpack___webpack_5.76.0.tgz"; path = fetchurl { - name = "webpack___webpack_5.73.0.tgz"; - url = "https://registry.yarnpkg.com/webpack/-/webpack-5.73.0.tgz"; - sha512 = "svjudQRPPa0YiOYa2lM/Gacw0r6PvxptHj4FuEKQ2kX05ZLkjbVc5MnPs6its5j7IZljnIqSVo/OsY2X0IpHGA=="; + name = "webpack___webpack_5.76.0.tgz"; + url = "https://registry.yarnpkg.com/webpack/-/webpack-5.76.0.tgz"; + sha512 = "l5sOdYBDunyf72HW8dF23rFtWq/7Zgvt/9ftMof71E/yUb1YLOBmTgA2K4vQthB3kotMrSj609txVE0dnr2fjA=="; }; } { @@ -10818,6 +12162,14 @@ }; } { + name = "which_typed_array___which_typed_array_1.1.9.tgz"; + path = fetchurl { + name = "which_typed_array___which_typed_array_1.1.9.tgz"; + url = "https://registry.yarnpkg.com/which-typed-array/-/which-typed-array-1.1.9.tgz"; + sha512 = "w9c4xkx6mPidwp7180ckYWfMmvxpjlZuIudNtDf4N/tTAUB8VJbX25qZoAsrtGuYNnGw3pa0AXgbGKRB8/EceA=="; + }; + } + { name = "which___which_1.3.1.tgz"; path = fetchurl { name = "which___which_1.3.1.tgz"; @@ -10970,6 +12322,14 @@ }; } { + name = "zustand___zustand_4.1.5.tgz"; + path = fetchurl { + name = "zustand___zustand_4.1.5.tgz"; + url = "https://registry.yarnpkg.com/zustand/-/zustand-4.1.5.tgz"; + sha512 = "PsdRT8Bvq22Yyh1tvpgdHNE7OAeFKqJXUxtJvj1Ixw2B9O2YZ1M34ImQ+xyZah4wZrR4lENMoDUutKPpyXCQ/Q=="; + }; + } + { name = "zwitch___zwitch_1.0.5.tgz"; path = fetchurl { name = "zwitch___zwitch_1.0.5.tgz"; @@ -10977,5 +12337,13 @@ sha512 = "V50KMwwzqJV0NpZIZFwfOD5/lyny3WlSzRiXgA0G7VUnRlqttta1L6UQIHzd6EuBY/cHGfwTIck7w1yH6Q5zUw=="; }; } + { + name = "zwitch___zwitch_2.0.4.tgz"; + path = fetchurl { + name = "zwitch___zwitch_2.0.4.tgz"; + url = "https://registry.yarnpkg.com/zwitch/-/zwitch-2.0.4.tgz"; + sha512 = "bXE4cR/kVZhKZX/RjPEflHaKVhUVl85noU3v6b8apfQEc1x4A+zBxjZ4lN8LqGd6WZ3dl98pY4o717VFmoPp+A=="; + }; + } ]; } diff --git a/pkgs/servers/clickhouse/default.nix b/pkgs/servers/clickhouse/default.nix index fcee2e420656a..758acecc93ecd 100644 --- a/pkgs/servers/clickhouse/default.nix +++ b/pkgs/servers/clickhouse/default.nix @@ -21,12 +21,26 @@ stdenv.mkDerivation rec { pname = "clickhouse"; version = "23.3.2.37"; - src = fetchFromGitHub { + src = fetchFromGitHub rec { owner = "ClickHouse"; repo = "ClickHouse"; rev = "v${version}-lts"; fetchSubmodules = true; - sha256 = "sha256-t6aW3wYmD4UajVaUhIE96wCqr6JbOtoBt910nD9IVsk="; + hash = "sha256-G/5KZ4vd9w5g0yB6bzyM8VX3l32Di+a6Ll87NK3GOrg="; + name = "clickhouse-${rev}.tar.gz"; + postFetch = '' + # compress to not exceed the 4GB output limit + # try to make a deterministic tarball + tar -I 'gzip -n' \ + --sort=name \ + --mtime=1970-01-01 \ + --owner=root --group=root \ + --numeric-owner --mode=go=rX,u+rw,a-s \ + --transform='s@^@source/@S' \ + -cf temp -C "$out" . + rm -r "$out" + mv temp "$out" + ''; }; strictDeps = true; diff --git a/pkgs/servers/code-server/default.nix b/pkgs/servers/code-server/default.nix index 008becc6fed76..234542f7f7c6a 100644 --- a/pkgs/servers/code-server/default.nix +++ b/pkgs/servers/code-server/default.nix @@ -1,7 +1,7 @@ { lib, stdenv, fetchFromGitHub, buildGoModule, makeWrapper , cacert, moreutils, jq, git, rsync, pkg-config, yarn, python3 , esbuild, nodejs_16, node-gyp, libsecret, xorg, ripgrep -, AppKit, Cocoa, CoreServices, Security, cctools, xcbuild, quilt }: +, AppKit, Cocoa, CoreServices, Security, cctools, xcbuild, quilt, nixosTests }: let system = stdenv.hostPlatform.system; @@ -243,6 +243,9 @@ in stdenv.mkDerivation rec { prefetchYarnCache = lib.overrideDerivation yarnCache (d: { outputHash = lib.fakeSha256; }); + tests = { + inherit (nixosTests) code-server; + }; }; meta = with lib; { diff --git a/pkgs/servers/computing/slurm/default.nix b/pkgs/servers/computing/slurm/default.nix index 9334c20943c50..ed9af47a223be 100644 --- a/pkgs/servers/computing/slurm/default.nix +++ b/pkgs/servers/computing/slurm/default.nix @@ -67,7 +67,7 @@ stdenv.mkDerivation rec { "--with-jwt=${libjwt}" "--with-lz4=${lz4.dev}" "--with-munge=${munge}" - "--with-yaml=${libyaml}" + "--with-yaml=${libyaml.dev}" "--with-ofed=${rdma-core}" "--sysconfdir=/etc/slurm" "--with-pmix=${pmix}" diff --git a/pkgs/servers/dns/acme-dns/default.nix b/pkgs/servers/dns/acme-dns/default.nix new file mode 100644 index 0000000000000..08cd511f18274 --- /dev/null +++ b/pkgs/servers/dns/acme-dns/default.nix @@ -0,0 +1,34 @@ +{ lib +, buildGoModule +, fetchFromGitHub +, nixosTests +}: + +buildGoModule rec { + pname = "acme-dns"; + version = "1.0"; + + src = fetchFromGitHub { + owner = "joohoi"; + repo = pname; + rev = "v${version}"; + hash = "sha256-qQwvhouqzkChWeu65epgoeMNqZyAD18T+xqEMgdMbhA="; + }; + + vendorHash = "sha256-q/P+cH2OihvPxPj2XWeLsTBHzQQABp0zjnof+Ys/qKo="; + + postInstall = '' + install -D -m0444 -t $out/lib/systemd/system ./acme-dns.service + substituteInPlace $out/lib/systemd/system/acme-dns.service --replace "/usr/local/bin/acme-dns" "$out/bin/acme-dns" + ''; + + passthru.tests = { inherit (nixosTests) acme-dns; }; + + meta = { + description = "Limited DNS server to handle ACME DNS challenges easily and securely"; + homepage = "https://github.com/joohoi/acme-dns"; + changelog = "https://github.com/joohoi/acme-dns/releases/tag/${src.rev}"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ emilylange ]; + }; +} diff --git a/pkgs/servers/dns/knot-dns/default.nix b/pkgs/servers/dns/knot-dns/default.nix index 594db03f2c627..f5a3dec64e5e4 100644 --- a/pkgs/servers/dns/knot-dns/default.nix +++ b/pkgs/servers/dns/knot-dns/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation rec { pname = "knot-dns"; - version = "3.2.6"; + version = "3.2.7"; src = fetchurl { url = "https://secure.nic.cz/files/knot-dns/knot-${version}.tar.xz"; - sha256 = "ac124fb17dbc4ac5310a30a396245a6ba304b3c89abed0f8a47d727462c8da4d"; + sha256 = "d3b7872ac8aa80f7f54ddb1bb3b1e2f90ec55f7270a2c4a9338eab42b7d2767b"; }; outputs = [ "bin" "out" "dev" ]; @@ -29,6 +29,12 @@ stdenv.mkDerivation rec { ./runtime-deps.patch ]; + # Upstream mistake in 3.2.7: too strict constraint. + postPatch = '' + substituteInPlace configure.ac \ + --replace 'libngtcp2 = 0.13.0' 'libngtcp2 = 0.13.1' + ''; + nativeBuildInputs = [ pkg-config autoreconfHook ]; buildInputs = [ gnutls liburcu libidn2 libunistring diff --git a/pkgs/servers/dns/pdns/default.nix b/pkgs/servers/dns/pdns/default.nix index 79d4144c82b02..b41e4df5242a6 100644 --- a/pkgs/servers/dns/pdns/default.nix +++ b/pkgs/servers/dns/pdns/default.nix @@ -1,28 +1,61 @@ -{ lib, stdenv, fetchurl, pkg-config, nixosTests -, boost, yaml-cpp, libsodium, sqlite, protobuf, openssl, systemd -, mariadb-connector-c, postgresql, lua, openldap, geoip, curl, unixODBC, lmdb, tinycdb +{ lib +, stdenv +, fetchurl +, pkg-config +, nixosTests +, boost +, yaml-cpp +, libsodium +, sqlite +, protobuf +, openssl +, systemd +, mariadb-connector-c +, postgresql +, lua +, openldap +, geoip +, curl +, unixODBC +, lmdb +, tinycdb }: -stdenv.mkDerivation rec { +stdenv.mkDerivation (finalAttrs: { pname = "pdns"; - version = "4.7.4"; + version = "4.8.0"; src = fetchurl { - url = "https://downloads.powerdns.com/releases/pdns-${version}.tar.bz2"; - hash = "sha256-dGndgft98RGX9JY4+knO/5+XMiX8j5xxYLC/wAoudHE="; + url = "https://downloads.powerdns.com/releases/pdns-${finalAttrs.version}.tar.bz2"; + hash = "sha256-YalruviwykmpIloiVLlEPE/44FDTN0N9ha9N6InhASc="; }; # redact configure flags from version output to reduce closure size patches = [ ./version.patch ]; nativeBuildInputs = [ pkg-config ]; buildInputs = [ - boost mariadb-connector-c postgresql lua openldap sqlite protobuf geoip - yaml-cpp libsodium curl unixODBC openssl systemd lmdb tinycdb + boost + mariadb-connector-c + postgresql + lua + openldap + sqlite + protobuf + geoip + yaml-cpp + libsodium + curl + unixODBC + openssl + systemd + lmdb + tinycdb ]; # Configure phase requires 64-bit time_t even on 32-bit platforms. env.NIX_CFLAGS_COMPILE = toString (lib.optionals stdenv.hostPlatform.is32bit [ - "-D_TIME_BITS=64" "-D_FILE_OFFSET_BITS=64" + "-D_TIME_BITS=64" + "-D_FILE_OFFSET_BITS=64" ]); configureFlags = [ @@ -61,4 +94,4 @@ stdenv.mkDerivation rec { license = licenses.gpl2; maintainers = with maintainers; [ mic92 disassembler nickcao ]; }; -} +}) diff --git a/pkgs/servers/etebase/default.nix b/pkgs/servers/etebase/default.nix index 1b50e3cbe4593..f397b78eca0bf 100644 --- a/pkgs/servers/etebase/default.nix +++ b/pkgs/servers/etebase/default.nix @@ -12,6 +12,7 @@ , python-ldap , withPostgres ? true , psycopg2 +, nix-update-script }: buildPythonPackage rec { @@ -47,6 +48,8 @@ buildPythonPackage rec { chmod +x $out/bin/etebase-server ''; + passthru.updateScript = nix-update-script {}; + meta = with lib; { homepage = "https://github.com/etesync/server"; description = "An Etebase (EteSync 2.0) server so you can run your own"; diff --git a/pkgs/servers/freeradius/default.nix b/pkgs/servers/freeradius/default.nix index 1a316743a436f..7dfd0ceb8c473 100644 --- a/pkgs/servers/freeradius/default.nix +++ b/pkgs/servers/freeradius/default.nix @@ -24,11 +24,11 @@ assert withRest -> withJson; stdenv.mkDerivation rec { pname = "freeradius"; - version = "3.2.2"; + version = "3.2.3"; src = fetchurl { url = "ftp://ftp.freeradius.org/pub/freeradius/freeradius-server-${version}.tar.gz"; - hash = "sha256-FEv37X7fIcrL0HUdQWAI+s4VZwI7ODKxGm2wejsH2cA="; + hash = "sha256-S94EcSLliMY/4tWZpz96uahjgG+ecW6Io9dwgLSCxXc="; }; nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/servers/geospatial/geoserver/default.nix b/pkgs/servers/geospatial/geoserver/default.nix index 368badee0fcc0..e4b6494063f9c 100644 --- a/pkgs/servers/geospatial/geoserver/default.nix +++ b/pkgs/servers/geospatial/geoserver/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "geoserver"; - version = "2.23.0"; + version = "2.23.1"; src = fetchurl { url = "mirror://sourceforge/geoserver/GeoServer/${version}/geoserver-${version}-bin.zip"; - sha256 = "sha256-qoRyU+dZrgYKa6tqe13nHJacOlNiSMuCECtfMFxu1Vg="; + sha256 = "sha256-0ZcHnDVw5atwdeqYeQXfRTio0/plRLTDljSMb81U+f4="; }; sourceRoot = "."; diff --git a/pkgs/servers/geospatial/martin/default.nix b/pkgs/servers/geospatial/martin/default.nix index e90c6a1134ded..0fab7f8313e5a 100644 --- a/pkgs/servers/geospatial/martin/default.nix +++ b/pkgs/servers/geospatial/martin/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "martin"; - version = "0.8.3"; + version = "0.8.6"; src = fetchFromGitHub { owner = "maplibre"; repo = "martin"; rev = "v${version}"; - hash = "sha256-ne1GdXKC/KBuwAmDmatdnbgCSIR4KldwJTTp/tshf6A="; + hash = "sha256-JHNmGjdbTC3WDmgVM20hXU5IX87DUaWfblIPUe0BUJk="; }; - cargoHash = "sha256-uZcVmZH81fu9wSE9juIVPpeNEfEW8007+GVaOdfquYc="; + cargoHash = "sha256-JK1Q0Sn3FCv6DuGsMySsORJBRpTfMdD/Y4dP8qPc1D8="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/servers/home-assistant/component-packages.nix b/pkgs/servers/home-assistant/component-packages.nix index 77811aa523dff..1583198cae3fc 100644 --- a/pkgs/servers/home-assistant/component-packages.nix +++ b/pkgs/servers/home-assistant/component-packages.nix @@ -4492,7 +4492,8 @@ "wsdot" = ps: with ps; [ ]; "wyoming" = ps: with ps; [ - ]; # missing inputs: wyoming + wyoming + ]; "x10" = ps: with ps; [ ]; "xbox" = ps: with ps; [ @@ -5417,6 +5418,7 @@ "worldclock" "ws66i" "wsdot" + "wyoming" "xbox" "xiaomi" "xiaomi_aqara" diff --git a/pkgs/servers/home-assistant/default.nix b/pkgs/servers/home-assistant/default.nix index a2cd04d3da670..72a1525ad739d 100644 --- a/pkgs/servers/home-assistant/default.nix +++ b/pkgs/servers/home-assistant/default.nix @@ -278,8 +278,8 @@ let src = fetchFromGitHub { owner = "spry-group"; repo = "python-vultr"; - rev = "v${version}"; - sha256 = "1qjvvr2v9gfnwskdl0ayazpcmiyw9zlgnijnhgq9mcri5gq9jw5h"; + rev = version; + hash = "sha256-sHCZ8Csxs5rwg1ZG++hP3MfK7ldeAdqm5ta9tEXeW+I="; }; }); diff --git a/pkgs/servers/http/dufs/default.nix b/pkgs/servers/http/dufs/default.nix index 11a313477b5a0..2676216ebcb44 100644 --- a/pkgs/servers/http/dufs/default.nix +++ b/pkgs/servers/http/dufs/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "dufs"; - version = "0.33.0"; + version = "0.34.1"; src = fetchFromGitHub { owner = "sigoden"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ZcKNpKlyGMFPNiWA28zG5gh0gWxI4IKGP6vs9OBhxQU="; + sha256 = "sha256-WSTY9j7wfoAqovLb9reNe7LXTjy40QObJNfgiidOINQ="; }; - cargoHash = "sha256-Ihq00dfjsJX2rNclfyYKp8a0U120+0YLZyvMO1yvBYw="; + cargoHash = "sha256-sQQUpbvr5IpsUTTznAfUJ5MvGh8rZ0tuZQkxMVpI2wM="; nativeBuildInputs = lib.optionals stdenv.isLinux [ pkg-config diff --git a/pkgs/servers/http/jetty/default.nix b/pkgs/servers/http/jetty/default.nix index 876189343f233..0aa226e46658d 100644 --- a/pkgs/servers/http/jetty/default.nix +++ b/pkgs/servers/http/jetty/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { pname = "jetty"; - version = "11.0.14"; + version = "11.0.15"; src = fetchurl { url = "mirror://maven/org/eclipse/jetty/jetty-home/${version}/jetty-home-${version}.tar.gz"; - sha256 = "sha256-lmS9B5dXJAc9j/RVs2sqMRaj1C5CN2trTszUXfPfHI4="; + sha256 = "sha256-bDg3CYPAGryqRv/gcPdeZKucXx6YTkkNd0Cu1+zIjto="; }; dontBuild = true; diff --git a/pkgs/servers/http/lighttpd/default.nix b/pkgs/servers/http/lighttpd/default.nix index b942589b791c4..b0bb720c21cdd 100644 --- a/pkgs/servers/http/lighttpd/default.nix +++ b/pkgs/servers/http/lighttpd/default.nix @@ -15,11 +15,11 @@ stdenv.mkDerivation rec { pname = "lighttpd"; - version = "1.4.69"; + version = "1.4.71"; src = fetchurl { url = "https://download.lighttpd.net/lighttpd/releases-${lib.versions.majorMinor version}.x/${pname}-${version}.tar.xz"; - sha256 = "sha256-FqyNuV5xlim6YZSbmfiib+upRqgdGFIVsoN5u0EWsLQ="; + sha256 = "sha256-uLaRXaIDlv3DVN8zJNXkQBabLl6nhZ46d1IThBMlr6w="; }; patches = [ diff --git a/pkgs/servers/http/lighttpd/disable-legacy-crypt-tests.patch b/pkgs/servers/http/lighttpd/disable-legacy-crypt-tests.patch index 3bf50551652ec..4a411c0b98aed 100644 --- a/pkgs/servers/http/lighttpd/disable-legacy-crypt-tests.patch +++ b/pkgs/servers/http/lighttpd/disable-legacy-crypt-tests.patch @@ -1,30 +1,28 @@ -diff --git a/tests/mod-fastcgi.t b/tests/mod-fastcgi.t -index 25016e60..e0427046 100755 ---- a/tests/mod-fastcgi.t -+++ b/tests/mod-fastcgi.t -@@ -79,7 +79,7 @@ EOF +diff -uNr lighttpd-1.4.71.orig/tests/mod-fastcgi.t lighttpd-1.4.71.new/tests/mod-fastcgi.t +--- lighttpd-1.4.71.orig/tests/mod-fastcgi.t 2023-05-27 21:56:16.000000000 +0200 ++++ lighttpd-1.4.71.new/tests/mod-fastcgi.t 2023-06-01 07:01:59.789873512 +0200 +@@ -79,7 +79,7 @@ ok($tf->handle_http($t) == 0, 'FastCGI + bin-copy-environment'); SKIP: { -- skip "no crypt-des under openbsd", 2 if $^O eq 'openbsd'; +- skip "no crypt-des under openbsd or MS Visual Studio", 2 if $^O eq 'openbsd' || $tf->{'win32native'}; + skip "no crypt-des", 2; $t->{REQUEST} = ( <<EOF GET /get-server-env.php?env=REMOTE_USER HTTP/1.0 -diff --git a/tests/request.t b/tests/request.t -index f56a4300..36e67b88 100755 ---- a/tests/request.t -+++ b/tests/request.t -@@ -1105,7 +1105,7 @@ $t->{RESPONSE} = [ { 'HTTP-Protocol' => 'HTTP/1.0', 'HTTP-Status' => 200 } ]; +diff -uNr lighttpd-1.4.71.orig/tests/request.t lighttpd-1.4.71.new/tests/request.t +--- lighttpd-1.4.71.orig/tests/request.t 2023-05-27 21:56:16.000000000 +0200 ++++ lighttpd-1.4.71.new/tests/request.t 2023-06-01 07:02:39.855940048 +0200 +@@ -1106,7 +1106,7 @@ ok($tf->handle_http($t) == 0, 'Basic-Auth: Valid Auth-token - plain'); SKIP: { -- skip "no crypt-des under openbsd", 2 if $^O eq 'openbsd'; +- skip "no crypt-des under openbsd or MS Visual Studio", 2 if $^O eq 'openbsd' || $tf->{'win32native'}; + skip "no crypt-des", 2; $t->{REQUEST} = ( <<EOF GET /server-config HTTP/1.0 Host: auth-htpasswd.example.org -@@ -1162,9 +1162,7 @@ $t->{RESPONSE} = [ { 'HTTP-Protocol' => 'HTTP/1.0', 'HTTP-Status' => 401 } ]; +@@ -1163,9 +1163,7 @@ ok($tf->handle_http($t) == 0, 'Basic-Auth: Valid Auth-token - htpasswd (apr-md5, wrong password)'); SKIP: { diff --git a/pkgs/servers/http/nginx/modules.nix b/pkgs/servers/http/nginx/modules.nix index 0861f29965db1..30d9ae748f1c1 100644 --- a/pkgs/servers/http/nginx/modules.nix +++ b/pkgs/servers/http/nginx/modules.nix @@ -1004,15 +1004,15 @@ let self = { name = "vts"; owner = "vozlt"; repo = "nginx-module-vts"; - rev = "v0.2.1"; - sha256 = "sha256-x4ry5ljPeJQY+7Mp04/xYIGf22d6Nee7CSqHezdK4gQ="; + rev = "v0.2.2"; + sha256 = "sha256-ReTmYGVSOwtnYDMkQDMWwxw09vT4iHYfYZvgd8iBotk="; }; meta = with lib; { description = "Virtual host traffic status module"; homepage = "https://github.com/vozlt/nginx-module-vts"; license = with licenses; [ bsd2 ]; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ SuperSandro2000 ]; }; }; @@ -1032,7 +1032,7 @@ let self = { description = "Nginx modules for the Zstandard compression"; homepage = "https://github.com/tokers/zstd-nginx-module"; license = with licenses; [ bsd2 ]; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ SuperSandro2000 ]; }; }; }; in self // lib.optionalAttrs config.allowAliases { diff --git a/pkgs/servers/http/router/default.nix b/pkgs/servers/http/router/default.nix index 4ce676c1099ba..31fc8332c96ea 100644 --- a/pkgs/servers/http/router/default.nix +++ b/pkgs/servers/http/router/default.nix @@ -9,16 +9,16 @@ rustPlatform.buildRustPackage rec { pname = "router"; - version = "1.18.1"; + version = "1.19.0"; src = fetchFromGitHub { owner = "apollographql"; repo = pname; rev = "v${version}"; - sha256 = "sha256-g5QDKYdXwZuVZZLpT0qA/Mp0kR9cZaGKa0VqLX6gyec="; + sha256 = "sha256-IuS7NmlTNmHHnnSZ+YIbV6BnxJW2xprOQ5mkz5FuJEQ="; }; - cargoHash = "sha256-n7FV2Gu0ZoJo2TPPBwzcM0ztEZzwPckqQHdjuUv03to="; + cargoHash = "sha256-yeb+4lgRDssjkEx6bYfGIbn4DJGpZZ/JDmuwFjQ+U+8="; nativeBuildInputs = [ pkg-config diff --git a/pkgs/servers/http/webhook/default.nix b/pkgs/servers/http/webhook/default.nix index 6daf06e117aa3..789382def1dc7 100644 --- a/pkgs/servers/http/webhook/default.nix +++ b/pkgs/servers/http/webhook/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "webhook"; - version = "2.8.0"; + version = "2.8.1"; src = fetchFromGitHub { owner = "adnanh"; repo = "webhook"; rev = version; - sha256 = "0n03xkgwpzans0cymmzb0iiks8mi2c76xxdak780dk0jbv6qgp5i"; + sha256 = "sha256-8OpVpm9nEroUlr41VgnyM6sxd/FlSvoQK5COOWvo4Y4="; }; - vendorSha256 = null; + vendorHash = null; subPackages = [ "." ]; diff --git a/pkgs/servers/imgproxy/default.nix b/pkgs/servers/imgproxy/default.nix index 970d3a8be3c51..68bcd61293d58 100644 --- a/pkgs/servers/imgproxy/default.nix +++ b/pkgs/servers/imgproxy/default.nix @@ -3,12 +3,12 @@ buildGoModule rec { pname = "imgproxy"; - version = "3.17.0"; + version = "3.18.0"; src = fetchFromGitHub { owner = pname; repo = pname; - sha256 = "sha256-7kNBXMjkOs8fLDUBdQJHOjwJhYYAbGPZZDA0NLFirH8="; + sha256 = "sha256-c85G76u0qLyRbiXEWpYKZerrkZmHkq+VmCdHJk6pH9M="; rev = "v${version}"; }; diff --git a/pkgs/servers/invidious/versions.json b/pkgs/servers/invidious/versions.json index 30aeda46901d2..8442646d55d10 100644 --- a/pkgs/servers/invidious/versions.json +++ b/pkgs/servers/invidious/versions.json @@ -4,9 +4,9 @@ "sha256": "sha256-EU6T9yQCdOLx98Io8o01rEsgxDFF/Xoy42LgPopD2/A=" }, "invidious": { - "rev": "10fee9da618db8ffe6a3952d547d4e85d144877e", - "sha256": "sha256-ZMPOsdyTtmxv/GJvLU9aPpXmLSsLqpKXaG5/u1166rw=", - "version": "unstable-2023-05-08" + "rev": "381a0e326d413daba1418bfca820bbfe2b7829a3", + "sha256": "sha256-WKEp7PotbdY0Vkdc8cHYsa4XmAO1dsz72ibEgxs2r7o=", + "version": "unstable-2023-05-25" }, "lsquic": { "sha256": "sha256-hG8cUvhbCNeMOsKkaJlgGpzUrIx47E/WhmPIdI5F3qM=", diff --git a/pkgs/servers/jackett/default.nix b/pkgs/servers/jackett/default.nix index 4b14b02bdf910..5e1d74d71b180 100644 --- a/pkgs/servers/jackett/default.nix +++ b/pkgs/servers/jackett/default.nix @@ -9,13 +9,13 @@ buildDotnetModule rec { pname = "jackett"; - version = "0.21.34"; + version = "0.21.128"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - hash = "sha512-h+40x/D0qWTa3pRnieE+UQr78iPntR/rn0+HivSv1ZZkSdOZbq4M3CAeDbBEh8xCuaNiR1DOQLONl2zOE1ZASQ=="; + hash = "sha512-22OiSh/jStVsA7ghjM+P+eVkViBFyhzNwhZbEIhWRlmpOaIC3NUSwMTKuZlq5I6J8Zc6gVW6kCOaKZoAWWWYfA=="; }; projectFile = "src/Jackett.Server/Jackett.Server.csproj"; diff --git a/pkgs/servers/kanidm/Cargo.lock b/pkgs/servers/kanidm/Cargo.lock index 3b2c59fd96f77..91d53f3c8c933 100644 --- a/pkgs/servers/kanidm/Cargo.lock +++ b/pkgs/servers/kanidm/Cargo.lock @@ -14,7 +14,7 @@ version = "0.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7fc95d1bdb8e6666b2b217308eeeb09f2d6728d104be3e31916cc74d15420331" dependencies = [ - "generic-array 0.14.6", + "generic-array 0.14.7", ] [[package]] @@ -68,16 +68,16 @@ version = "0.7.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "fcb51a0695d8f838b1ee009b3fbf66bda078cd64590202a864a8f3e8c4315c47" dependencies = [ - "getrandom 0.2.8", + "getrandom 0.2.9", "once_cell", "version_check", ] [[package]] name = "aho-corasick" -version = "0.7.20" +version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cc936419f96fa211c1b9166887b38e5e40b19958e5b895be7c1f93adec7071ac" +checksum = "67fc08ce920c31afb70f013dcce1bfc3a3195de6a228474e45e1f145b36f8d04" dependencies = [ "memchr", ] @@ -99,9 +99,9 @@ checksum = "4b46cbb362ab8752921c97e041f5e366ee6297bd428a31275b9fcf1e380f7299" [[package]] name = "anyhow" -version = "1.0.68" +version = "1.0.70" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2cb2f989d18dd141ab8ae82f64d1a8cdd37e0840f73a406896cf5e99502fab61" +checksum = "7de8ce5e0f9f8d88245311066a578d72b7af3e7088f32783804676302df237e4" [[package]] name = "anymap2" @@ -111,9 +111,9 @@ checksum = "d301b3b94cb4b2f23d7917810addbbaff90738e0ca2be692bd027e70d7e0330c" [[package]] name = "arrayref" -version = "0.3.6" +version = "0.3.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a4c527152e37cf757a3f78aae5a06fbeefdb07ccc535c980a3208ee3060dd544" +checksum = "6b4930d2cb77ce62f89ee5d5289b4ac049559b1c45539271f5ed4fdc7db34545" [[package]] name = "arrayvec" @@ -130,11 +130,11 @@ dependencies = [ "asn1-rs-derive", "asn1-rs-impl", "displaydoc", - "nom 7.1.3", + "nom", "num-traits", "rusticata-macros", "thiserror", - "time 0.3.17", + "time 0.3.20", ] [[package]] @@ -145,7 +145,7 @@ checksum = "db8b7511298d5b7784b40b092d9e9dcd3a627a5707e4b5e507931ab0d44eeebf" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 1.0.109", "synstructure", ] @@ -157,7 +157,7 @@ checksum = "2777730b2039ac0f95f093556e61b6d26cebed5393ca6f152717777cec3a42ed" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] @@ -197,9 +197,9 @@ dependencies = [ [[package]] name = "async-executor" -version = "1.5.0" +version = "1.5.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "17adb73da160dfb475c183343c8cccd80721ea5a605d3eb57125f0a7b7a92d0b" +checksum = "6fa3dc5f2a8564f07759c008b9109dc0d39de92a88d5588b8a5036d286383afb" dependencies = [ "async-lock", "async-task", @@ -222,7 +222,6 @@ dependencies = [ "blocking", "futures-lite", "once_cell", - "tokio", ] [[package]] @@ -243,39 +242,38 @@ dependencies = [ [[package]] name = "async-io" -version = "1.12.0" +version = "1.13.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8c374dda1ed3e7d8f0d9ba58715f924862c63eae6849c92d3a18e7fbde9e2794" +checksum = "0fc5b45d93ef0529756f812ca52e44c221b35341892d3dcc34132ac02f3dd2af" dependencies = [ "async-lock", "autocfg", + "cfg-if 1.0.0", "concurrent-queue", "futures-lite", - "libc", "log", "parking", "polling", + "rustix", "slab", "socket2", "waker-fn", - "windows-sys", ] [[package]] name = "async-lock" -version = "2.6.0" +version = "2.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c8101efe8695a6c17e02911402145357e718ac92d3ff88ae8419e84b1707b685" +checksum = "fa24f727524730b077666307f2734b4a1a1c57acb79193127dcc8914d5242dd7" dependencies = [ "event-listener", - "futures-lite", ] [[package]] name = "async-process" -version = "1.6.0" +version = "1.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6381ead98388605d0d9ff86371043b5aa922a3905824244de40dc263a14fcba4" +checksum = "7a9d28b1d97e08915212e2e45310d47854eafa69600756fc735fb788f75199c9" dependencies = [ "async-io", "async-lock", @@ -284,9 +282,9 @@ dependencies = [ "cfg-if 1.0.0", "event-listener", "futures-lite", - "libc", + "rustix", "signal-hook", - "windows-sys", + "windows-sys 0.48.0", ] [[package]] @@ -366,26 +364,26 @@ dependencies = [ [[package]] name = "async-task" -version = "4.3.0" +version = "4.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7a40729d2133846d9ed0ea60a8b9541bccddab49cd30f0715a1da672fe9a2524" +checksum = "ecc7ab41815b3c653ccd2978ec3255c81349336702dfdf62ee6f7069b12a3aae" [[package]] name = "async-trait" -version = "0.1.64" +version = "0.1.68" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1cd7fce9ba8c3c042128ce72d8b2ddbf3a05747efb67ea0313c635e10bda47a2" +checksum = "b9ccdd8f2a161be9bd5c023df56f1b2a0bd1d83872ae53b71a84a12c9bf6e842" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 2.0.15", ] [[package]] name = "atomic-waker" -version = "1.1.0" +version = "1.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "debc29dde2e69f9e47506b525f639ed42300fc014a3e007832592448fa8e4599" +checksum = "1181e1e0d1fce796a03db1ae795d67167da795f9cf4a39c37589e85ef57f26d3" [[package]] name = "atty" @@ -413,7 +411,7 @@ dependencies = [ "libudev", "log", "memoffset 0.6.5", - "nom 7.1.3", + "nom", "openssl", "openssl-sys", "rand 0.8.5", @@ -464,11 +462,11 @@ checksum = "a4a4ddaa51a5bc52a6948f74c06d20aaaddb71924eab79b8c97a8c556e942d6a" [[package]] name = "base64urlsafedata" -version = "0.1.2" +version = "0.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dbc67436259cce95e00076dbcd3dd5e300c84d4c657d03e476b5c7619da7c2d6" +checksum = "18b3d30abb74120a9d5267463b9e0045fdccc4dd152e7249d966612dc1721384" dependencies = [ - "base64 0.13.1", + "base64 0.21.0", "serde", "serde_json", ] @@ -536,16 +534,16 @@ version = "0.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "4152116fd6e9dadb291ae18fc1ec3575ed6d84c29642d97890f4b4a3417297e4" dependencies = [ - "generic-array 0.14.6", + "generic-array 0.14.7", ] [[package]] name = "block-buffer" -version = "0.10.3" +version = "0.10.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "69cce20737498f97b993470a6e536b8523f0af7892a4f928cceb1ac5e52ebe7e" +checksum = "3078c7629b62d3f0439517fa394996acacc5cbc91c5a20d8c658e77abd503a71" dependencies = [ - "generic-array 0.14.6", + "generic-array 0.14.7", ] [[package]] @@ -559,9 +557,9 @@ dependencies = [ [[package]] name = "blocking" -version = "1.3.0" +version = "1.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3c67b173a56acffd6d2326fb7ab938ba0b00a71480e14902b2591c87bc5741e8" +checksum = "77231a1c8f801696fc0123ec6150ce92cffb8e164a02afb9c8ddee0e9b65ad65" dependencies = [ "async-channel", "async-lock", @@ -569,6 +567,7 @@ dependencies = [ "atomic-waker", "fastrand", "futures-lite", + "log", ] [[package]] @@ -578,18 +577,6 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "cfa8873f51c92e232f9bac4065cddef41b714152812bfc5f7672ba16d6ef8cd9" [[package]] -name = "bstr" -version = "0.2.17" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ba3569f383e8f1598449f1a423e72e99569137b47740b1da11ef19af3d5c3223" -dependencies = [ - "lazy_static", - "memchr", - "regex-automata", - "serde", -] - -[[package]] name = "bumpalo" version = "3.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -603,9 +590,9 @@ checksum = "e3b5ca7a04898ad4bcd41c90c5285445ff5b791899bb1b0abdd2a2aa791211d7" [[package]] name = "bytemuck" -version = "1.13.0" +version = "1.13.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c041d3eab048880cb0b86b256447da3f18859a163c3b8d8893f4e6368abe6393" +checksum = "17febce684fd15d89027105661fec94afb475cb995fbc59d2865198446ba2eea" [[package]] name = "byteorder" @@ -654,9 +641,9 @@ checksum = "17cc5e6b5ab06331c33589842070416baa137e8b0eb912b008cfd4a78ada7919" [[package]] name = "chrono" -version = "0.4.23" +version = "0.4.24" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "16b0a3d9ed01224b22057780a37bb8c5dbfe1be8ba48678e7bf57ec4b385411f" +checksum = "4e3c5919066adf22df73762e50cffcde3a758f2a848b113b586d1f86728b673b" dependencies = [ "iana-time-zone", "js-sys", @@ -701,14 +688,14 @@ version = "0.2.5" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "12f8e7987cbd042a63249497f41aed09f8e65add917ea6566effbc56578d6801" dependencies = [ - "generic-array 0.14.6", + "generic-array 0.14.7", ] [[package]] name = "clap" -version = "3.2.23" +version = "3.2.25" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "71655c45cb9845d3270c9d6df84ebe72b4dad3c2ba3f7023ad47c144e4e473a5" +checksum = "4ea181bf566f71cb9a5d17a59e1871af638180a18fb0035c92ae62b705207123" dependencies = [ "atty", "bitflags", @@ -732,15 +719,15 @@ dependencies = [ [[package]] name = "clap_derive" -version = "3.2.18" +version = "3.2.25" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ea0c8bce528c4be4da13ea6fead8965e95b6073585a2f05204bd8f4119f82a65" +checksum = "ae6371b8bdc8b7d3959e9cf7b22d4435ef3e79e138688421ec654acf8c81b008" dependencies = [ "heck", "proc-macro-error", "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] @@ -804,9 +791,9 @@ dependencies = [ [[package]] name = "concurrent-queue" -version = "2.1.0" +version = "2.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c278839b831783b70278b14df4d45e1beb1aad306c07bb796637de9a0e323e8e" +checksum = "62ec6771ecfa0762d24683ee5a32ad78487a3d3afdc0fb8cae19d2c5deb50b7c" dependencies = [ "crossbeam-utils", ] @@ -821,7 +808,7 @@ dependencies = [ "lazy_static", "libc", "unicode-width", - "windows-sys", + "windows-sys 0.42.0", ] [[package]] @@ -870,7 +857,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e859cd57d0710d9e06c381b550c06e76992472a8c6d527aecd2fc673dcc231fb" dependencies = [ "percent-encoding", - "time 0.3.17", + "time 0.3.20", "version_check", ] @@ -886,7 +873,7 @@ dependencies = [ "publicsuffix", "serde", "serde_json", - "time 0.3.17", + "time 0.3.20", "url", ] @@ -902,15 +889,15 @@ dependencies = [ [[package]] name = "core-foundation-sys" -version = "0.8.3" +version = "0.8.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5827cebf4670468b8772dd191856768aedcb1b0278a04f989f7766351917b9dc" +checksum = "e496a50fda8aacccc86d7529e2c1e0892dbd0f898a6b5645b5561b89c3210efa" [[package]] name = "cpufeatures" -version = "0.2.5" +version = "0.2.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "28d997bd5e24a5928dd43e46dc529867e207907fe0b239c3477d924f7f2ca320" +checksum = "280a9f2d8b3a38871a3c8a46fb80db65e5e5ed97da80c4d08bf27fb63e35e181" dependencies = [ "libc", ] @@ -942,7 +929,7 @@ dependencies = [ "ciborium", "clap", "criterion-plot", - "itertools 0.10.5", + "itertools", "lazy_static", "num-traits", "oorandom", @@ -963,7 +950,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6b50826342786a51a89e2da3a28f1c32b06e387201bc2d19791f622c673706b1" dependencies = [ "cast", - "itertools 0.10.5", + "itertools", ] [[package]] @@ -973,7 +960,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1ff76b51e4c068c52bfd2866e1567bee7c567ae8f24ada09fd4307019e25eab7" dependencies = [ "chrono", - "nom 7.1.3", + "nom", "once_cell", ] @@ -993,9 +980,9 @@ dependencies = [ [[package]] name = "crossbeam-channel" -version = "0.5.6" +version = "0.5.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c2dd04ddaf88237dc3b8d8f9a3c1004b506b54b3313403944054d23c0870c521" +checksum = "a33c2bf77f2df06183c3aa30d1e96c0695a313d4f9c453cc3762a6db39f99200" dependencies = [ "cfg-if 1.0.0", "crossbeam-utils", @@ -1003,9 +990,9 @@ dependencies = [ [[package]] name = "crossbeam-deque" -version = "0.8.2" +version = "0.8.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "715e8152b692bba2d374b53d4875445368fdf21a94751410af607a5ac677d1fc" +checksum = "ce6fd6f855243022dcecf8702fef0c297d4338e226845fe067f6341ad9fa0cef" dependencies = [ "cfg-if 1.0.0", "crossbeam-epoch", @@ -1014,14 +1001,14 @@ dependencies = [ [[package]] name = "crossbeam-epoch" -version = "0.9.13" +version = "0.9.14" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "01a9af1f4c2ef74bb8aa1f7e19706bc72d03598c8a570bb5de72243c7a9d9d5a" +checksum = "46bd5f3f85273295a9d14aedfb86f6aadbff6d8f5295c4a9edb08e819dcf5695" dependencies = [ "autocfg", "cfg-if 1.0.0", "crossbeam-utils", - "memoffset 0.7.1", + "memoffset 0.8.0", "scopeguard", ] @@ -1037,9 +1024,9 @@ dependencies = [ [[package]] name = "crossbeam-utils" -version = "0.8.14" +version = "0.8.15" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4fb766fa798726286dbbb842f174001dab8abc7b627a1dd86e0b7222a95d929f" +checksum = "3c063cd8cc95f5c377ed0d4b49a4b21f632396ff690e8470c29b3359b346984b" dependencies = [ "cfg-if 1.0.0", ] @@ -1050,7 +1037,7 @@ version = "0.1.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1bfb12502f3fc46cca1bb51ac28df9d618d813cdc3d2f25b9fe775a34af26bb3" dependencies = [ - "generic-array 0.14.6", + "generic-array 0.14.7", "typenum", ] @@ -1060,7 +1047,7 @@ version = "0.8.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "b584a330336237c1eecd3e94266efb216c56ed91225d634cb2991c5f3fd1aeab" dependencies = [ - "generic-array 0.14.6", + "generic-array 0.14.7", "subtle", ] @@ -1070,19 +1057,18 @@ version = "0.10.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "bff07008ec701e8028e2ceb8f83f0e4274ee62bd2dbdc4fefff2e9a91824081a" dependencies = [ - "generic-array 0.14.6", + "generic-array 0.14.7", "subtle", ] [[package]] name = "csv" -version = "1.1.6" +version = "1.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "22813a6dc45b335f9bade10bf7271dc477e81113e89eb251a0bc2a8a81c536e1" +checksum = "0b015497079b9a9d69c02ad25de6c0a6edef051ea6360a327d0bd05802ef64ad" dependencies = [ - "bstr", "csv-core", - "itoa 0.4.8", + "itoa", "ryu", "serde", ] @@ -1103,7 +1089,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6d2301688392eb071b0bf1a37be05c469d3cc4dbbd95df672fe28ab021e6a096" dependencies = [ "quote", - "syn", + "syn 1.0.109", ] [[package]] @@ -1117,9 +1103,9 @@ dependencies = [ [[package]] name = "cxx" -version = "1.0.88" +version = "1.0.94" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "322296e2f2e5af4270b54df9e85a02ff037e271af20ba3e7fe1575515dc840b8" +checksum = "f61f1b6389c3fe1c316bf8a4dccc90a38208354b330925bce1f74a6c4756eb93" dependencies = [ "cc", "cxxbridge-flags", @@ -1129,9 +1115,9 @@ dependencies = [ [[package]] name = "cxx-build" -version = "1.0.88" +version = "1.0.94" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "017a1385b05d631e7875b1f151c9f012d37b53491e2a87f65bff5c262b2111d8" +checksum = "12cee708e8962df2aeb38f594aae5d827c022b6460ac71a7a3e2c3c2aae5a07b" dependencies = [ "cc", "codespan-reporting", @@ -1139,35 +1125,36 @@ dependencies = [ "proc-macro2", "quote", "scratch", - "syn", + "syn 2.0.15", ] [[package]] name = "cxxbridge-flags" -version = "1.0.88" +version = "1.0.94" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c26bbb078acf09bc1ecda02d4223f03bdd28bd4874edcb0379138efc499ce971" +checksum = "7944172ae7e4068c533afbb984114a56c46e9ccddda550499caa222902c7f7bb" [[package]] name = "cxxbridge-macro" -version = "1.0.88" +version = "1.0.94" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "357f40d1f06a24b60ae1fe122542c1fb05d28d32acb2aed064e84bc2ad1e252e" +checksum = "2345488264226bf682893e25de0769f3360aac9957980ec49361b083ddaa5bc5" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 2.0.15", ] [[package]] name = "daemon" -version = "1.1.0-alpha.11" +version = "1.1.0-alpha.12" dependencies = [ "clap", "clap_complete", + "fs2", + "kanidm_lib_file_permissions", "kanidm_proto", "kanidmd_core", - "kanidmd_lib", "profiles", "reqwest", "serde", @@ -1181,9 +1168,9 @@ dependencies = [ [[package]] name = "darling" -version = "0.14.2" +version = "0.14.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b0dd3cd20dc6b5a876612a6e5accfe7f3dd883db6d07acfbf14c128f61550dfa" +checksum = "7b750cb3417fd1b327431a470f388520309479ab0bf5e323505daf0290cd3850" dependencies = [ "darling_core", "darling_macro", @@ -1191,27 +1178,27 @@ dependencies = [ [[package]] name = "darling_core" -version = "0.14.2" +version = "0.14.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a784d2ccaf7c98501746bf0be29b2022ba41fd62a2e622af997a03e9f972859f" +checksum = "109c1ca6e6b7f82cc233a97004ea8ed7ca123a9af07a8230878fcfda9b158bf0" dependencies = [ "fnv", "ident_case", "proc-macro2", "quote", "strsim", - "syn", + "syn 1.0.109", ] [[package]] name = "darling_macro" -version = "0.14.2" +version = "0.14.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7618812407e9402654622dd402b0a89dff9ba93badd6540781526117b92aab7e" +checksum = "a4aab4dbc9f7611d8b55048a3a16d2d010c2c8334e46304b40ac1cc14bf3b48e" dependencies = [ "darling_core", "quote", - "syn", + "syn 1.0.109", ] [[package]] @@ -1228,7 +1215,7 @@ checksum = "fe398ac75057914d7d07307bf67dc7f3f574a26783b4fc7805a20ffa9f506e82" dependencies = [ "asn1-rs", "displaydoc", - "nom 7.1.3", + "nom", "num-bigint", "num-traits", "rusticata-macros", @@ -1236,33 +1223,33 @@ dependencies = [ [[package]] name = "derive_builder" -version = "0.11.2" +version = "0.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d07adf7be193b71cc36b193d0f5fe60b918a3a9db4dad0449f57bcfd519704a3" +checksum = "8d67778784b508018359cbc8696edb3db78160bab2c2a28ba7f56ef6932997f8" dependencies = [ "derive_builder_macro", ] [[package]] name = "derive_builder_core" -version = "0.11.2" +version = "0.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1f91d4cfa921f1c05904dc3c57b4a32c38aed3340cce209f3a6fd1478babafc4" +checksum = "c11bdc11a0c47bc7d37d582b5285da6849c96681023680b906673c5707af7b0f" dependencies = [ "darling", "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] name = "derive_builder_macro" -version = "0.11.2" +version = "0.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8f0314b72bed045f3a68671b3c86328386762c93f82d98c65c3cb5e5f573dd68" +checksum = "ebcda35c7a396850a55ffeac740804b40ffec779b98fffbb1738f4033f0ee79e" dependencies = [ "derive_builder_core", - "syn", + "syn 1.0.109", ] [[package]] @@ -1272,14 +1259,14 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9313f104b590510b46fc01c0a324fc76505c13871454d3c48490468d04c8d395" dependencies = [ "libc", - "nom 7.1.3", + "nom", ] [[package]] name = "dialoguer" -version = "0.10.3" +version = "0.10.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "af3c796f3b0b408d9fd581611b47fa850821fcb84aa640b83a3c1a5be2d691f2" +checksum = "59c6f2989294b9a498d3ad5491a79c6deb604617378e1cdc4bfc1c1361fe2f87" dependencies = [ "console", "shell-words", @@ -1302,7 +1289,7 @@ version = "0.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d3dd60d1080a57a05ab032377049e0591415d2b31afd7028356dbf3cc6dcb066" dependencies = [ - "generic-array 0.14.6", + "generic-array 0.14.7", ] [[package]] @@ -1311,7 +1298,7 @@ version = "0.10.6" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8168378f4e5023e7218c89c891c0fd8ecdb5e5e4f18cb78f38cf245dd021e76f" dependencies = [ - "block-buffer 0.10.3", + "block-buffer 0.10.4", "crypto-common", ] @@ -1349,14 +1336,14 @@ checksum = "3bf95dc3f046b9da4f2d51833c0d3547d8564ef6910f5c1ed130306a75b92886" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] name = "dyn-clone" -version = "1.0.10" +version = "1.0.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c9b0705efd4599c15a38151f4721f7bc388306f61084d3bfd50bd07fbca5cb60" +checksum = "68b0cf012f1230e43cd00ebb729c6bb58707ecfa8ad08b52ef3a4ccd2697fc30" [[package]] name = "either" @@ -1372,23 +1359,44 @@ checksum = "a357d28ed41a50f9c765dbfe56cbc04a64e53e5fc58ba79fbc34c10ef3df831f" [[package]] name = "encoding_rs" -version = "0.8.31" +version = "0.8.32" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9852635589dc9f9ea1b6fe9f05b50ef208c85c834a562f0c6abb1c475736ec2b" +checksum = "071a31f4ee85403370b58aca746f01041ede6f0da2730960ad001edc2b71b394" dependencies = [ "cfg-if 1.0.0", ] [[package]] name = "erased-serde" -version = "0.3.24" +version = "0.3.25" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e4ca605381c017ec7a5fef5e548f1cfaa419ed0f6df6367339300db74c92aa7d" +checksum = "4f2b0c2380453a92ea8b6c8e5f64ecaafccddde8ceab55ff7a8ac1029f894569" dependencies = [ "serde", ] [[package]] +name = "errno" +version = "0.3.1" +source = 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"regex", @@ -1424,9 +1432,9 @@ dependencies = [ [[package]] name = "fastrand" -version = "1.8.0" +version = "1.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a7a407cfaa3385c4ae6b23e84623d48c2798d06e3e6a1878f7f59f17b3f86499" +checksum = "e51093e27b0797c359783294ca4f0a911c270184cb10f85783b118614a1501be" dependencies = [ "instant", ] @@ -1449,27 +1457,27 @@ dependencies = [ [[package]] name = "fernet" -version = "0.2.0" +version = "0.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c6dedfc944f4ac38cac8b74cb1c7b4fb73c175db232d6fa98e9bd1fd81908b89" +checksum = "3364d69f691f3903b1a71605fa04f40a7c2d259f0f0512347e36d19a63debf1f" dependencies = [ - "base64 0.13.1", + "base64 0.21.0", "byteorder", - "getrandom 0.2.8", + "getrandom 0.2.9", "openssl", "zeroize", ] [[package]] name = "filetime" -version = "0.2.19" +version = "0.2.21" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4e884668cd0c7480504233e951174ddc3b382f7c2666e3b7310b5c4e7b0c37f9" +checksum = "5cbc844cecaee9d4443931972e1289c8ff485cb4cc2767cb03ca139ed6885153" dependencies = [ "cfg-if 1.0.0", "libc", - "redox_syscall", - "windows-sys", + "redox_syscall 0.2.16", + "windows-sys 0.48.0", ] [[package]] @@ -1513,16 +1521,20 @@ dependencies = [ ] [[package]] -name = "fs_extra" -version = "1.2.0" +name = "fs2" +version = "0.4.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2022715d62ab30faffd124d40b76f4134a550a87792276512b18d63272333394" +checksum = "9564fc758e15025b46aa6643b1b77d047d1a56a1aea6e01002ac0c7026876213" +dependencies = [ + "libc", + "winapi", +] [[package]] name = "futures" -version = "0.3.26" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "13e2792b0ff0340399d58445b88fd9770e3489eff258a4cbc1523418f12abf84" +checksum = "23342abe12aba583913b2e62f22225ff9c950774065e4bfb61a19cd9770fec40" dependencies = [ "futures-channel", "futures-core", @@ -1535,9 +1547,9 @@ dependencies = [ [[package]] name = "futures-channel" -version = "0.3.26" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2e5317663a9089767a1ec00a487df42e0ca174b61b4483213ac24448e4664df5" +checksum = "955518d47e09b25bbebc7a18df10b81f0c766eaf4c4f1cccef2fca5f2a4fb5f2" dependencies = [ "futures-core", "futures-sink", @@ -1556,15 +1568,15 @@ dependencies = [ [[package]] name = "futures-core" -version = "0.3.26" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ec90ff4d0fe1f57d600049061dc6bb68ed03c7d2fbd697274c41805dcb3f8608" +checksum = "4bca583b7e26f571124fe5b7561d49cb2868d79116cfa0eefce955557c6fee8c" [[package]] name = "futures-executor" -version = "0.3.26" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e8de0a35a6ab97ec8869e32a2473f4b1324459e14c29275d14b10cb1fd19b50e" +checksum = 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"95a73af87da33b5acf53acfebdc339fe592ecf5357ac7c0a7734ab9d8c876a70" +checksum = "89ca545a94061b6365f2c7355b4b32bd20df3ff95f02da9329b34ccc3bd6ee72" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 2.0.15", ] [[package]] name = "futures-sink" -version = "0.3.26" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f310820bb3e8cfd46c80db4d7fb8353e15dfff853a127158425f31e0be6c8364" +checksum = "f43be4fe21a13b9781a69afa4985b0f6ee0e1afab2c6f454a8cf30e2b2237b6e" [[package]] name = "futures-task" -version = "0.3.26" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dcf79a1bf610b10f42aea489289c5a2c478a786509693b80cd39c44ccd936366" +checksum = "76d3d132be6c0e6aa1534069c705a74a5997a356c0dc2f86a47765e5617c5b65" [[package]] name = "futures-util" -version = "0.3.26" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = 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[[package]] name = "h2" -version = "0.3.15" +version = "0.3.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5f9f29bc9dda355256b2916cf526ab02ce0aeaaaf2bad60d65ef3f12f11dd0f4" +checksum = "17f8a914c2987b688368b5138aa05321db91f4090cf26118185672ad588bce21" dependencies = [ "bytes", "fnv", @@ -1915,9 +1927,9 @@ dependencies = [ [[package]] name = "heck" -version = "0.4.0" +version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2540771e65fc8cb83cd6e8a237f70c319bd5c29f78ed1084ba5d50eeac86f7f9" +checksum = "95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8" [[package]] name = "hermit-abi" @@ -1938,6 +1950,12 @@ dependencies = [ ] [[package]] +name = "hermit-abi" +version = "0.3.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "fed44880c466736ef9a5c5b5facefb5ed0785676d0c02d612db14e54f0d84286" + +[[package]] name = "hex" version = "0.4.3" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1975,13 +1993,13 @@ dependencies = [ [[package]] name = "http" -version = "0.2.8" +version = "0.2.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "75f43d41e26995c17e71ee126451dd3941010b0514a81a9d11f3b341debc2399" +checksum = "bd6effc99afb63425aff9b05836f029929e345a6148a14b7ecd5ab67af944482" dependencies = [ "bytes", "fnv", - "itoa 1.0.5", + "itoa", ] [[package]] @@ -2043,9 +2061,9 @@ checksum = "c4a1e36c821dbe04574f602848a19f742f4fb3c98d40449f11bcad18d6b17421" [[package]] name = "hyper" -version = "0.14.23" +version = "0.14.26" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "034711faac9d2166cb1baf1a2fb0b60b1f277f8492fd72176c17f3515e1abd3c" +checksum = "ab302d72a6f11a3b910431ff93aae7e773078c769f0a3ef15fb9ec692ed147d4" dependencies = [ "bytes", "futures-channel", @@ -2056,7 +2074,7 @@ dependencies = [ "http-body", "httparse", "httpdate", - "itoa 1.0.5", + "itoa", "pin-project-lite 0.2.9", "socket2", "tokio", @@ -2080,16 +2098,16 @@ dependencies = [ [[package]] name = "iana-time-zone" -version = "0.1.53" +version = "0.1.56" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "64c122667b287044802d6ce17ee2ddf13207ed924c712de9a66a5814d5b64765" +checksum = "0722cd7114b7de04316e7ea5456a0bbb20e4adb46fd27a3697adb812cff0f37c" dependencies = [ "android_system_properties", "core-foundation-sys", "iana-time-zone-haiku", "js-sys", "wasm-bindgen", - "winapi", + "windows 0.48.0", ] [[package]] @@ -2141,12 +2159,6 @@ dependencies = [ ] [[package]] -name = "if_chain" -version = "1.0.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cb56e1aa765b4b4f3aadfab769793b7087bb03a4ea4920644a6d238e2df5b9ed" - -[[package]] name = "image" version = "0.23.14" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2171,9 +2183,9 @@ dependencies = [ [[package]] name = "indexmap" -version = "1.9.2" +version = "1.9.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1885e79c1fc4b10f0e172c475f458b7f7b93061064d98c3293e98c5ba0c8b399" +checksum = "bd070e393353796e801d209ad339e89596eb4c8d430d18ede6a1cced8fafbd99" dependencies = [ "autocfg", "hashbrown", @@ -2195,19 +2207,21 @@ dependencies = [ ] [[package]] -name = "ipnet" -version = "2.7.1" +name = "io-lifetimes" +version = "1.0.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "30e22bd8629359895450b59ea7a776c850561b96a3b1d31321c1949d9e6c9146" +checksum = "9c66c74d2ae7e79a5a8f7ac924adbe38ee42a859c6539ad869eb51f0b52dc220" +dependencies = [ + "hermit-abi 0.3.1", + "libc", + "windows-sys 0.48.0", +] [[package]] -name = "itertools" -version = "0.9.0" +name = "ipnet" +version = "2.7.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "284f18f85651fe11e8a991b2adb42cb078325c996ed026d994719efcfca1d54b" -dependencies = [ - "either", -] +checksum = "12b6ee2129af8d4fb011108c73d99a1b83a85977f23b82460c0ae2e25bb4b57f" [[package]] name = "itertools" @@ -2220,37 +2234,31 @@ dependencies = [ [[package]] name = "itoa" -version = "0.4.8" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b71991ff56294aa922b450139ee08b3bfc70982c6b2c7562771375cf73542dd4" - -[[package]] -name = "itoa" -version = "1.0.5" +version = "1.0.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fad582f4b9e86b6caa621cabeb0963332d92eea04729ab12892c2533951e6440" +checksum = "453ad9f582a441959e5f0d088b02ce04cfe8d51a8eaf077f12ac6d3e94164ca6" [[package]] name = "jobserver" -version = "0.1.25" +version = "0.1.26" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "068b1ee6743e4d11fb9c6a1e6064b3693a1b600e7f5f5988047d98b3dc9fb90b" +checksum = "936cfd212a0155903bcbc060e316fb6cc7cbf2e1907329391ebadc1fe0ce77c2" dependencies = [ "libc", ] [[package]] name = "js-sys" -version = "0.3.60" +version = "0.3.61" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "49409df3e3bf0856b916e2ceaca09ee28e6871cf7d9ce97a692cacfdb2a25a47" +checksum = "445dde2150c55e483f3d8416706b97ec8e8237c307e5b7b4b8dd15e6af2a0730" dependencies = [ "wasm-bindgen", ] [[package]] name = "kanidm-ipa-sync" -version = "1.1.0-alpha.11" +version = "1.1.0-alpha.12" dependencies = [ "base64urlsafedata", "chrono", @@ -2274,7 +2282,7 @@ dependencies = [ [[package]] name = "kanidm_client" -version = "1.1.0-alpha.11" +version = "1.1.0-alpha.12" dependencies = [ "kanidm_proto", "reqwest", @@ -2290,8 +2298,32 @@ dependencies = [ ] [[package]] +name = "kanidm_lib_crypto" +version = "0.1.0" +dependencies = [ + "base64 0.21.0", + "base64urlsafedata", + "hex", + "kanidm_proto", + "openssl", + "openssl-sys", + "rand 0.8.5", + "serde", + "sketching", + "tracing", +] + +[[package]] +name = "kanidm_lib_file_permissions" +version = "0.1.0" +dependencies = [ + "users", + "whoami", +] + +[[package]] name = "kanidm_proto" -version = "1.1.0-alpha.11" +version = "1.1.0-alpha.12" dependencies = [ "base32", "base64urlsafedata", @@ -2310,7 +2342,7 @@ dependencies = [ [[package]] name = "kanidm_tools" -version = "1.1.0-alpha.11" +version = "1.1.0-alpha.12" dependencies = [ "clap", "clap_complete", @@ -2337,16 +2369,17 @@ dependencies = [ [[package]] name = "kanidm_unix_int" -version = "1.1.0-alpha.11" +version = "1.1.0-alpha.12" dependencies = [ "bytes", "clap", "clap_complete", "futures", "kanidm_client", + "kanidm_lib_crypto", + "kanidm_lib_file_permissions", "kanidm_proto", "kanidmd_core", - "kanidmd_lib", "libc", "libsqlite3-sys", "lru 0.8.1", @@ -2369,7 +2402,7 @@ dependencies = [ [[package]] name = "kanidmd_core" -version = "1.1.0-alpha.11" +version = "1.1.0-alpha.12" dependencies = [ "async-trait", "chrono", @@ -2402,11 +2435,10 @@ dependencies = [ [[package]] name = "kanidmd_lib" -version = "1.1.0-alpha.11" +version = "1.1.0-alpha.12" dependencies = [ - "async-std", "async-trait", - "base64 0.13.1", + "base64 0.21.0", "base64urlsafedata", "compact_jwt", "concread", @@ -2417,14 +2449,15 @@ dependencies = [ "futures", "futures-util", "hashbrown", - "hex", "idlset", + "kanidm_lib_crypto", "kanidm_proto", "kanidmd_lib_macros", "lazy_static", "ldap3_proto", "libc", "libsqlite3-sys", + "nonempty", "num_enum", "openssl", "openssl-sys", @@ -2452,7 +2485,6 @@ dependencies = [ "urlencoding", "users", "uuid", - "validator", "webauthn-authenticator-rs", "webauthn-rs", "webauthn-rs-core", @@ -2466,12 +2498,12 @@ version = "0.1.0" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 2.0.15", ] [[package]] name = "kanidmd_testkit" -version = "1.1.0-alpha.11" +version = "1.1.0-alpha.12" dependencies = [ "compact_jwt", "futures", @@ -2485,6 +2517,7 @@ dependencies = [ "serde_json", "sketching", "testkit-macros", + "time 0.2.27", "tokio", "tracing", "url", @@ -2493,7 +2526,7 @@ dependencies = [ [[package]] name = "kanidmd_web_ui" -version = "1.1.0-alpha.11" +version = "1.1.0-alpha.12" dependencies = [ "compact_jwt", "gloo", @@ -2504,6 +2537,7 @@ dependencies = [ "serde", "serde-wasm-bindgen", "serde_json", + "time 0.2.27", "url", "uuid", "wasm-bindgen", @@ -2540,20 +2574,19 @@ checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646" [[package]] name = "lber" -version = "0.3.0" +version = "0.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8a99b520993b21a6faab32643cf4726573dc18ca4cf2d48cbeb24d248c86c930" +checksum = "b5d85f5e00e12cb50c70c3b1c1f0daff6546eb4c608b44d0a990e38a539e0446" dependencies = [ - "byteorder", "bytes", - "nom 2.2.1", + "nom", ] [[package]] name = "ldap3_client" -version = "0.3.1" +version = "0.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9599af178521f7eb322e27c8e9998bcb864a374613b50e2cf941474102296b4f" +checksum = "0236f3aac28f4f79929664cd635f310fa7469f17b67d45c85848a0f3ca516d53" dependencies = [ "base64 0.13.1", "base64urlsafedata", @@ -2571,12 +2604,13 @@ dependencies = [ [[package]] name = "ldap3_proto" -version = "0.3.1" +version = "0.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4162706b6f3b3d58f577990e22e9a0e03e2f9bedc2b8181d8abab2498da32003" +checksum = "57ea4b099d9f84c8424a56e9b361f5f9aeae9d87ca9bd683c54a6a27c8676597" dependencies = [ "bytes", "lber", + "nom", "peg", "tokio-util", "tracing", @@ -2584,23 +2618,10 @@ dependencies = [ ] [[package]] -name = "lexical-core" -version = "0.7.6" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6607c62aa161d23d17a9072cc5da0be67cdfc89d3afb1e8d9c842bebc2525ffe" -dependencies = [ - "arrayvec", - "bitflags", - "cfg-if 1.0.0", - "ryu", - "static_assertions", -] - -[[package]] name = "libc" -version = "0.2.139" +version = "0.2.142" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "201de327520df007757c1f0adce6e827fe8562fbc28bfd9c15571c66ca1f5f79" +checksum = "6a987beff54b60ffa6d51982e1aa1146bc42f19bd26be28b0586f252fccf5317" [[package]] name = "libgit2-sys" @@ -2694,10 +2715,10 @@ dependencies = [ ] [[package]] -name = "linked-hash-map" -version = "0.5.6" +name = "linux-raw-sys" +version = "0.3.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0717cef1bc8b636c6e1c1bbdefc09e6322da8a9321966e8928ef80d20f7f770f" +checksum = "9b085a4f2cde5781fc4b1717f2e86c62f5cda49de7ba99a7c2eae02b61c9064c" [[package]] name = "lock_api" @@ -2739,15 +2760,6 @@ dependencies = [ ] [[package]] -name = "lru-cache" -version = "0.1.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "31e24f1ad8321ca0e8a1e0ac13f23cb668e6f5466c2c57319f6a5cf1cc8e3b1c" -dependencies = [ - "linked-hash-map", -] - -[[package]] name = "matchers" version = "0.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2788,18 +2800,18 @@ dependencies = [ [[package]] name = "memoffset" -version = "0.7.1" +version = "0.8.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5de893c32cde5f383baa4c04c5d6dbdd735cfd4a794b0debdb2bb1b421da5ff4" +checksum = "d61c719bcfbcf5d62b3a09efa6088de8c54bc0bfcd3ea7ae39fcc186108b8de1" dependencies = [ "autocfg", ] [[package]] name = "mime" -version = "0.3.16" +version = "0.3.17" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2a60c7ce501c71e03a9c9c0d35b861413ae925bd979cc7a4e30d060069aaac8d" +checksum = "6877bb514081ee2a7ff5ef9de3281f14a4dd4bceac4c09388074a6b5df8a139a" [[package]] name = "minimal-lexical" @@ -2818,14 +2830,14 @@ dependencies = [ [[package]] name = "mio" -version = "0.8.5" +version = "0.8.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e5d732bc30207a6423068df043e3d02e0735b155ad7ce1a6f76fe2baa5b158de" +checksum = "5b9d9a46eff5b4ff64b45a9e316a6d1e0bc719ef429cbec4dc630684212bfdf9" dependencies = [ "libc", "log", "wasi 0.11.0+wasi-snapshot-preview1", - "windows-sys", + "windows-sys 0.45.0", ] [[package]] @@ -2848,23 +2860,6 @@ dependencies = [ [[package]] name = "nom" -version = "2.2.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cf51a729ecf40266a2368ad335a5fdde43471f545a967109cd62146ecf8b66ff" - -[[package]] -name = "nom" -version = "5.1.2" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ffb4262d26ed83a1c0a33a38fe2bb15797329c85770da05e6b828ddb782627af" -dependencies = [ - "lexical-core", - "memchr", - "version_check", -] - -[[package]] -name = "nom" version = "7.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d273983c5a657a70a3e8f2a01329822f3b8c8172b73826411a55751e404a0a4a" @@ -2874,23 +2869,23 @@ dependencies = [ ] [[package]] -name = "nom8" -version = "0.2.0" +name = "nonempty" +version = "0.8.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ae01545c9c7fc4486ab7debaf2aad7003ac19431791868fb2e8066df97fad2f8" +checksum = "aeaf4ad7403de93e699c191202f017118df734d3850b01e13a3a8b2e6953d3c9" dependencies = [ - "memchr", + "serde", ] [[package]] name = "nss_kanidm" -version = "1.1.0-alpha.11" +version = "1.1.0-alpha.12" dependencies = [ "kanidm_unix_int", "lazy_static", "libc", "libnss", - "paste 1.0.11", + "paste 1.0.12", ] [[package]] @@ -2967,23 +2962,23 @@ dependencies = [ [[package]] name = "num_enum" -version = "0.5.9" +version = "0.5.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8d829733185c1ca374f17e52b762f24f535ec625d2cc1f070e34c8a9068f341b" +checksum = "1f646caf906c20226733ed5b1374287eb97e3c2a5c227ce668c1f2ce20ae57c9" dependencies = [ "num_enum_derive", ] [[package]] name = "num_enum_derive" -version = "0.5.9" +version = "0.5.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2be1598bf1c313dcdd12092e3f1920f463462525a21b7b4e11b4168353d0123e" +checksum = "dcbff9bc912032c62bf65ef1d5aea88983b420f4f839db1e9b0c281a25c9c799" dependencies = [ "proc-macro-crate", "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] @@ -2994,7 +2989,7 @@ checksum = "eeaf26a72311c087f8c5ba617c96fac67a5c04f430e716ac8d8ab2de62e23368" dependencies = [ "base64 0.13.1", "chrono", - "getrandom 0.2.8", + "getrandom 0.2.9", "http", "rand 0.8.5", "serde", @@ -3016,15 +3011,9 @@ dependencies = [ [[package]] name = "once_cell" -version = "1.17.0" +version = "1.17.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6f61fba1741ea2b3d6a1e3178721804bb716a68a6aeba1149b5d52e3d464ea66" - -[[package]] -name = "oncemutex" -version = "0.1.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "44d11de466f4a3006fe8a5e7ec84e93b79c70cb992ae0aa0eb631ad2df8abfe2" +checksum = "b7e5500299e16ebb147ae15a00a942af264cf3688f47923b8fc2cd5858f23ad3" [[package]] name = "oorandom" @@ -3046,9 +3035,9 @@ checksum = "624a8340c38c1b80fd549087862da4ba43e08858af025b236e509b6649fc13d5" [[package]] name = "openssl" -version = "0.10.45" +version = "0.10.52" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b102428fd03bc5edf97f62620f7298614c45cedf287c271e7ed450bbaf83f2e1" +checksum = "01b8574602df80f7b85fdfc5392fa884a4e3b3f4f35402c070ab34c3d3f78d56" dependencies = [ "bitflags", "cfg-if 1.0.0", @@ -3061,13 +3050,13 @@ dependencies = [ [[package]] name = "openssl-macros" -version = "0.1.0" +version = "0.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b501e44f11665960c7e7fcf062c7d96a14ade4aa98116c004b2e37b5be7d736c" +checksum = "a948666b637a0f465e8564c73e89d4dde00d72d4d473cc972f390fc3dcee7d9c" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 2.0.15", ] [[package]] @@ -3078,11 +3067,10 @@ checksum = "ff011a302c396a5197692431fc1948019154afc178baf7d8e37367442a4601cf" [[package]] name = "openssl-sys" -version = "0.9.80" +version = "0.9.87" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "23bbbf7854cd45b83958ebe919f0e8e516793727652e27fda10a8384cfc790b7" +checksum = "8e17f59264b2809d77ae94f0e1ebabc434773f370d6ca667bd223ea10e06cc7e" dependencies = [ - "autocfg", "cc", "libc", "pkg-config", @@ -3091,7 +3079,7 @@ dependencies = [ [[package]] name = "orca" -version = "1.1.0-alpha.11" +version = "1.1.0-alpha.12" dependencies = [ "clap", "crossbeam", @@ -3119,9 +3107,9 @@ dependencies = [ [[package]] name = "os_str_bytes" -version = "6.4.1" +version = "6.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9b7820b9daea5457c9f21c69448905d723fbd21136ccf521748f23fd49e723ee" +checksum = "ceedf44fb00f2d1984b0bc98102627ce622e083e49a5bacdb3e514fa4238e267" [[package]] name = "overload" @@ -3131,7 +3119,7 @@ checksum = "b15813163c1d831bf4a13c3610c05c0d03b39feb07f7e09fa234dac9b15aaf39" [[package]] name = "pam_kanidm" -version = "1.1.0-alpha.11" +version = "1.1.0-alpha.12" dependencies = [ "kanidm_unix_int", "libc", @@ -3140,9 +3128,9 @@ dependencies = [ [[package]] name = "parking" -version = "2.0.0" +version = "2.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "427c3892f9e783d91cc128285287e70a59e206ca452770ece88a76f7a3eddd72" +checksum = "14f2252c834a40ed9bb5422029649578e63aa341ac401f74e719dd1afda8394e" [[package]] name = "parking_lot" @@ -3156,15 +3144,15 @@ dependencies = [ [[package]] name = "parking_lot_core" -version = "0.9.6" +version = "0.9.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ba1ef8814b5c993410bb3adfad7a5ed269563e4a2f90c41f5d85be7fb47133bf" +checksum = "9069cbb9f99e3a5083476ccb29ceb1de18b9118cafa53e90c9551235de2b9521" dependencies = [ "cfg-if 1.0.0", "libc", - "redox_syscall", + "redox_syscall 0.2.16", "smallvec", - "windows-sys", + "windows-sys 0.45.0", ] [[package]] @@ -3179,9 +3167,9 @@ dependencies = [ [[package]] name = "paste" -version = "1.0.11" +version = "1.0.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = 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"quote", - "syn", + "syn 1.0.109", ] [[package]] @@ -3330,16 +3298,18 @@ dependencies = [ [[package]] name = "polling" -version = "2.5.2" +version = "2.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "22122d5ec4f9fe1b3916419b76be1e80bcb93f618d071d2edf841b137b2a2bd6" +checksum = "4be1c66a6add46bff50935c313dae30a5030cf8385c5206e8a95e9e9def974aa" dependencies = [ "autocfg", + "bitflags", "cfg-if 1.0.0", + "concurrent-queue", "libc", "log", - "wepoll-ffi", - "windows-sys", + "pin-project-lite 0.2.9", + "windows-sys 0.48.0", ] [[package]] @@ -3361,19 +3331,19 @@ checksum = "5b40af805b3121feab8a3c29f04d8ad262fa8e0561883e7653e024ae4479e6de" [[package]] name = "prettyplease" -version = "0.1.23" +version = "0.1.25" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e97e3215779627f01ee256d2fad52f3d95e8e1c11e9fc6fd08f7cd455d5d5c78" +checksum = "6c8646e95016a7a6c4adea95bafa8a16baab64b583356217f2c85db4a39d9a86" dependencies = [ "proc-macro2", - "syn", + "syn 1.0.109", ] [[package]] name = "proc-macro-crate" -version = "1.3.0" +version = "1.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "66618389e4ec1c7afe67d51a9bf34ff9236480f8d51e7489b7d5ab0303c13f34" +checksum = "7f4c021e1093a56626774e81216a4ce732a735e5bad4868a03f3ed65ca0c3919" dependencies = [ "once_cell", "toml_edit", @@ -3388,7 +3358,7 @@ dependencies = [ "proc-macro-error-attr", "proc-macro2", "quote", - "syn", + "syn 1.0.109", "version_check", ] @@ -3411,18 +3381,18 @@ checksum = "dc375e1527247fe1a97d8b7156678dfe7c1af2fc075c9a4db3690ecd2a148068" [[package]] name = "proc-macro2" -version = "1.0.50" +version = "1.0.56" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6ef7d57beacfaf2d8aee5937dab7b7f28de3cb8b1828479bb5de2a7106f2bae2" +checksum = "2b63bdb0cd06f1f4dedf69b254734f9b45af66e4a031e42a7480257d9898b435" dependencies = [ "unicode-ident", ] [[package]] name = "profiles" -version = "1.1.0-alpha.11" +version = "1.1.0-alpha.12" dependencies = [ - "base64 0.13.1", + "base64 0.21.0", "serde", "toml", ] @@ -3477,19 +3447,10 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a993555f31e5a609f617c12db6250dedcac1b0a85076912c436e6fc9b2c8e6a3" [[package]] -name = "quick-xml" -version = "0.18.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3cc440ee4802a86e357165021e3e255a9143724da31db1e2ea540214c96a0f82" -dependencies = [ - "memchr", -] - -[[package]] name = "quote" -version = "1.0.23" +version = "1.0.26" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8856d8364d252a14d474036ea1358d63c9e6965c8e5c1885c18f73d70bff9c7b" +checksum = "4424af4bf778aae2051a77b60283332f386554255d722233d09fbfc7e30da2fc" dependencies = [ "proc-macro2", ] @@ -3574,7 +3535,7 @@ version = "0.6.4" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = 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+source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "567664f262709473930a4bf9e51bf2ebf3348f2e748ccc50dea20646858f8f29" +dependencies = [ + "bitflags", +] + +[[package]] name = "redox_users" version = "0.4.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "b033d837a7cf162d7993aded9304e30a83213c648b6e389db233191f891e5c2b" dependencies = [ - "getrandom 0.2.8", - "redox_syscall", + "getrandom 0.2.9", + "redox_syscall 0.2.16", "thiserror", ] [[package]] name = "regex" -version = "1.7.1" +version = "1.8.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "48aaa5748ba571fb95cd2c85c09f629215d3a6ece942baa100950af03a34f733" +checksum = "af83e617f331cc6ae2da5443c602dfa5af81e517212d9d611a5b3ba1777b5370" dependencies = [ "aho-corasick", "memchr", - "regex-syntax", + "regex-syntax 0.7.1", ] [[package]] @@ -3645,41 +3615,26 @@ version = "0.1.10" source = "registry+https://github.com/rust-lang/crates.io-index" checksum 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= "1.0.11" +version = "1.0.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5583e89e108996506031660fe09baa5011b9dd0341b89029313006d1fb508d70" +checksum = "4f3208ce4d8448b3f3e7d168a73f5e0c43a61e32930de3bceeccedb388b6bf06" [[package]] name = "ryu" -version = "1.0.12" +version = "1.0.13" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7b4b9743ed687d4b4bcedf9ff5eaa7398495ae14e61cba0a295704edbc7decde" +checksum = "f91339c0467de62360649f8d3e185ca8de4224ff281f66000de5eb2a77a79041" [[package]] name = "same-file" @@ -3824,14 +3793,14 @@ version = "0.1.21" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "713cfb06c7059f3588fb8044c0fad1d09e3c01d225e25b9220dbfdcf16dbb1b3" dependencies = [ - "windows-sys", + "windows-sys 0.42.0", ] [[package]] name = "scheduled-thread-pool" -version = "0.2.6" +version = "0.2.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = 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"bb2f3770c8bce3bcda7e149193a069a0f4365bda1fa5cd88e03bca26afc1216c" dependencies = [ "serde_derive", ] @@ -3931,9 +3900,9 @@ dependencies = [ [[package]] name = "serde_bytes" -version = "0.11.8" +version = "0.11.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "718dc5fff5b36f99093fc49b280cfc96ce6fc824317783bff5a1fed0c7a64819" +checksum = "416bda436f9aab92e02c8e10d49a15ddd339cea90b6e340fe51ed97abb548294" dependencies = [ "serde", ] @@ -3960,40 +3929,40 @@ dependencies = [ [[package]] name = "serde_derive" -version = "1.0.152" +version = "1.0.160" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "af487d118eecd09402d70a5d72551860e788df87b464af30e5ea6a38c75c541e" +checksum = "291a097c63d8497e00160b166a967a4a79c64f3facdd01cbd7502231688d77df" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 2.0.15", ] [[package]] name = "serde_fmt" -version = "1.0.1" +version = "1.0.2" source = 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"windows-targets 0.48.0", +] + +[[package]] name = "windows-sys" version = "0.42.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5a3e1820f08b8513f676f7ab6c1f99ff312fb97b553d30ff4dd86f9f15728aa7" dependencies = [ - "windows_aarch64_gnullvm 0.42.1", - "windows_aarch64_msvc 0.42.1", - "windows_i686_gnu 0.42.1", - "windows_i686_msvc 0.42.1", - "windows_x86_64_gnu 0.42.1", - "windows_x86_64_gnullvm 0.42.1", - "windows_x86_64_msvc 0.42.1", + "windows_aarch64_gnullvm 0.42.2", + "windows_aarch64_msvc 0.42.2", + "windows_i686_gnu 0.42.2", + "windows_i686_msvc 0.42.2", + "windows_x86_64_gnu 0.42.2", + "windows_x86_64_gnullvm 0.42.2", + "windows_x86_64_msvc 0.42.2", +] + +[[package]] +name = "windows-sys" +version = "0.45.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "75283be5efb2831d37ea142365f009c02ec203cd29a3ebecbc093d52315b66d0" +dependencies = [ + "windows-targets 0.42.2", +] + +[[package]] +name = "windows-sys" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "677d2418bec65e3338edb076e806bc1ec15693c5d0104683f2efe857f61056a9" +dependencies = [ + "windows-targets 0.48.0", +] + +[[package]] +name = "windows-targets" +version = "0.42.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8e5180c00cd44c9b1c88adb3693291f1cd93605ded80c250a75d472756b4d071" +dependencies = [ + "windows_aarch64_gnullvm 0.42.2", + "windows_aarch64_msvc 0.42.2", + "windows_i686_gnu 0.42.2", + "windows_i686_msvc 0.42.2", + "windows_x86_64_gnu 0.42.2", + "windows_x86_64_gnullvm 0.42.2", + "windows_x86_64_msvc 0.42.2", +] + +[[package]] +name = "windows-targets" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7b1eb6f0cd7c80c79759c929114ef071b87354ce476d9d94271031c0497adfd5" +dependencies = [ + "windows_aarch64_gnullvm 0.48.0", + "windows_aarch64_msvc 0.48.0", + "windows_i686_gnu 0.48.0", + "windows_i686_msvc 0.48.0", + "windows_x86_64_gnu 0.48.0", + "windows_x86_64_gnullvm 0.48.0", + "windows_x86_64_msvc 0.48.0", ] [[package]] @@ -5223,9 +5205,15 @@ checksum = "163d2761774f2278ecb4e6719e80b2b5e92e5a2be73a7bcd3ef624dd5e3091fd" [[package]] name = "windows_aarch64_gnullvm" -version = "0.42.1" +version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8c9864e83243fdec7fc9c5444389dcbbfd258f745e7853198f365e3c4968a608" +checksum = "597a5118570b68bc08d8d59125332c54f1ba9d9adeedeef5b99b02ba2b0698f8" + +[[package]] +name = "windows_aarch64_gnullvm" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "91ae572e1b79dba883e0d315474df7305d12f569b400fcf90581b06062f7e1bc" [[package]] name = "windows_aarch64_msvc" @@ -5235,9 +5223,15 @@ checksum = "ef005ff2bceb00d3b84166a359cc19084f9459754fd3fe5a504dee3dddcd0a0c" [[package]] name = "windows_aarch64_msvc" -version = "0.42.1" +version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4c8b1b673ffc16c47a9ff48570a9d85e25d265735c503681332589af6253c6c7" +checksum = "e08e8864a60f06ef0d0ff4ba04124db8b0fb3be5776a5cd47641e942e58c4d43" + +[[package]] +name = "windows_aarch64_msvc" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b2ef27e0d7bdfcfc7b868b317c1d32c641a6fe4629c171b8928c7b08d98d7cf3" [[package]] name = "windows_i686_gnu" @@ -5247,9 +5241,15 @@ checksum = "02b4df2d51e32f03f8b4b228e487828c03bcb36d97b216fc5463bcea5bb1440b" [[package]] name = "windows_i686_gnu" -version = "0.42.1" +version = "0.42.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c61d927d8da41da96a81f029489353e68739737d3beca43145c8afec9a31a84f" + +[[package]] +name = "windows_i686_gnu" +version = "0.48.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "de3887528ad530ba7bdbb1faa8275ec7a1155a45ffa57c37993960277145d640" +checksum = "622a1962a7db830d6fd0a69683c80a18fda201879f0f447f065a3b7467daa241" [[package]] name = "windows_i686_msvc" @@ -5259,9 +5259,15 @@ checksum = "568a966834571f2f3267f07dd72b4d8507381f25e53d056808483b2637385ef7" [[package]] name = "windows_i686_msvc" -version = "0.42.1" +version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bf4d1122317eddd6ff351aa852118a2418ad4214e6613a50e0191f7004372605" +checksum = "44d840b6ec649f480a41c8d80f9c65108b92d89345dd94027bfe06ac444d1060" + +[[package]] +name = "windows_i686_msvc" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "4542c6e364ce21bf45d69fdd2a8e455fa38d316158cfd43b3ac1c5b1b19f8e00" [[package]] name = "windows_x86_64_gnu" @@ -5271,9 +5277,15 @@ checksum = "fc395dac1adf444e276d096d933ae7961361c8cda3245cffef7a9b3a70a8f994" [[package]] name = "windows_x86_64_gnu" -version = "0.42.1" +version = "0.42.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8de912b8b8feb55c064867cf047dda097f92d51efad5b491dfb98f6bbb70cb36" + +[[package]] +name = "windows_x86_64_gnu" +version = "0.48.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c1040f221285e17ebccbc2591ffdc2d44ee1f9186324dd3e84e99ac68d699c45" +checksum = "ca2b8a661f7628cbd23440e50b05d705db3686f894fc9580820623656af974b1" [[package]] name = "windows_x86_64_gnullvm" @@ -5283,9 +5295,15 @@ checksum = "90e8ec22b715d5b436e1d59c8adad6c744dc20cd984710121d5836b4e8dbb5e0" [[package]] name = "windows_x86_64_gnullvm" -version = "0.42.1" +version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "628bfdf232daa22b0d64fdb62b09fcc36bb01f05a3939e20ab73aaf9470d0463" +checksum = "26d41b46a36d453748aedef1486d5c7a85db22e56aff34643984ea85514e94a3" + +[[package]] +name = "windows_x86_64_gnullvm" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7896dbc1f41e08872e9d5e8f8baa8fdd2677f29468c4e156210174edc7f7b953" [[package]] name = "windows_x86_64_msvc" @@ -5295,9 +5313,24 @@ checksum = "8b9761f0216b669019df1512f6e25e5ee779bf61c5cdc43c7293858e7efd7926" [[package]] name = "windows_x86_64_msvc" -version = "0.42.1" +version = "0.42.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "9aec5da331524158c6d1a4ac0ab1541149c0b9505fde06423b02f5ef0106b9f0" + +[[package]] +name = "windows_x86_64_msvc" +version = "0.48.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "447660ad36a13288b1db4d4248e857b510e8c3a225c822ba4fb748c0aafecffd" +checksum = "1a515f5799fe4961cb532f983ce2b23082366b898e52ffbce459c86f67c8378a" + +[[package]] +name = "winnow" +version = "0.4.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ae8970b36c66498d8ff1d66685dc86b91b29db0c7739899012f63a63814b4b28" +dependencies = [ + "memchr", +] [[package]] name = "winreg" @@ -5319,11 +5352,11 @@ dependencies = [ "data-encoding", "der-parser", "lazy_static", - "nom 7.1.3", + "nom", "oid-registry", "rusticata-macros", "thiserror", - "time 0.3.17", + "time 0.3.20", ] [[package]] @@ -5363,7 +5396,7 @@ dependencies = [ "proc-macro-error", "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] @@ -5392,42 +5425,41 @@ checksum = "89b249cdb39e0cddaf0644dedc781854524374664793479fdc01e6a65d6e6ae3" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] name = "zeroize" -version = "1.5.7" +version = "1.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c394b5bd0c6f669e7275d9c20aa90ae064cb22e75a1cad54e1b34088034b149f" +checksum = "2a0956f1ba7c7909bfb66c2e9e4124ab6f6482560f6628b5aaeba39207c9aad9" dependencies = [ "zeroize_derive", ] [[package]] name = "zeroize_derive" -version = "1.3.3" +version = "1.4.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "44bf07cb3e50ea2003396695d58bf46bc9887a1f362260446fad6bc4e79bd36c" +checksum = "ce36e65b0d2999d2aafac989fb249189a141aee1f53c612c1f37d72631959f69" dependencies = [ "proc-macro2", "quote", - "syn", - "synstructure", + "syn 2.0.15", ] [[package]] name = "zxcvbn" -version = "2.2.1" +version = "2.2.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "568becce91e872373a4b33f24ddc67e5280ae2536ccb8c9d22a25d398b72c8b0" +checksum = "103fa851fff70ea29af380e87c25c48ff7faac5c530c70bd0e65366d4e0c94e4" dependencies = [ "derive_builder", "fancy-regex", - "itertools 0.10.5", + "itertools", "js-sys", "lazy_static", "quick-error", "regex", - "time 0.3.17", + "time 0.3.20", ] diff --git a/pkgs/servers/kanidm/default.nix b/pkgs/servers/kanidm/default.nix index 1d592d6aa1424..f285593cbc9c2 100644 --- a/pkgs/servers/kanidm/default.nix +++ b/pkgs/servers/kanidm/default.nix @@ -4,6 +4,7 @@ , nixosTests , rustPlatform , fetchFromGitHub +, fetchpatch , installShellFiles , pkg-config , udev @@ -17,35 +18,44 @@ let in rustPlatform.buildRustPackage rec { pname = "kanidm"; - version = "1.1.0-alpha.11"; + version = "1.1.0-alpha.12"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-TVGLL1Ir/Nld0kdhWmcYYmChrW42ctJPY/U7wtuEwCo="; + hash = "sha256-ZlUn7m5xgMWWIr9y/dkM/yZ2KF2LdkaxqtHsMcxAT/M="; }; cargoLock = { lockFile = ./Cargo.lock; outputHashes = { - "tracing-forest-0.1.4" = "sha256-ofBLxSzZ5SYy8cbViVUa6VXKbOgd8lt7QUYhL0BW6I4="; + "tracing-forest-0.1.5" = "sha256-L6auSKB4DCnZBZpx7spiikhSOD6i1W3erc3zjn+26Ao="; }; }; KANIDM_BUILD_PROFILE = "release_nixos_${arch}"; + patches = [ + (fetchpatch { + # Bring back x86_64-v1 microarchitecture level + name = "cpu-opt-level.patch"; + url = "https://github.com/kanidm/kanidm/commit/59c6723f7dfb2266eae45c3b2ddd377872a7a113.patch"; + hash = "sha256-8rVEYitxvdVduQ/+AD/UG3v+mgT/VxkLoxNIXczUfCQ="; + }) + ]; + postPatch = let format = (formats.toml { }).generate "${KANIDM_BUILD_PROFILE}.toml"; profile = { web_ui_pkg_path = "@web_ui_pkg_path@"; - cpu_flags = if stdenv.isx86_64 then "x86_64_v1" else "none"; + cpu_flags = if stdenv.isx86_64 then "x86_64_legacy" else "none"; }; in '' - cp ${format profile} profiles/${KANIDM_BUILD_PROFILE}.toml - substituteInPlace profiles/${KANIDM_BUILD_PROFILE}.toml \ + cp ${format profile} libs/profiles/${KANIDM_BUILD_PROFILE}.toml + substituteInPlace libs/profiles/${KANIDM_BUILD_PROFILE}.toml \ --replace '@web_ui_pkg_path@' "$out/ui" ''; @@ -66,7 +76,7 @@ rustPlatform.buildRustPackage rec { # We don't compile the wasm-part form source, as there isn't a rustc for # wasm32-unknown-unknown in nixpkgs yet. mkdir $out - cp -r kanidmd_web_ui/pkg $out/ui + cp -r server/web_ui/pkg $out/ui ''; preFixup = '' diff --git a/pkgs/servers/krill/default.nix b/pkgs/servers/krill/default.nix index 8025f6b9d3f55..46619bc960fd3 100644 --- a/pkgs/servers/krill/default.nix +++ b/pkgs/servers/krill/default.nix @@ -9,16 +9,16 @@ rustPlatform.buildRustPackage rec { pname = "krill"; - version = "0.12.3"; + version = "0.13.1"; src = fetchFromGitHub { owner = "NLnetLabs"; repo = pname; rev = "v${version}"; - hash = "sha256-N12Uc2Dh0JFCEOzFvU5YzPeupcaOetW6ehRuAYOYJn0="; + hash = "sha256-UwvSwV1EHcEsF+IScdDiuuU56sXojEWGObzPKrLvlEQ="; }; - cargoHash = "sha256-pcoGFXano34Sc+iVqJfrUo+wWASpAA1gslCHfVcEoJ4="; + cargoHash = "sha256-ts0yr1BY/StEmklUB29blR4K6RfHbH5WzIP2Zs2sVR4="; buildInputs = [ openssl ] ++ lib.optional stdenv.isDarwin Security; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/servers/maddy/default.nix b/pkgs/servers/maddy/default.nix index d008bdf939ad6..e48154bf02ea5 100644 --- a/pkgs/servers/maddy/default.nix +++ b/pkgs/servers/maddy/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "maddy"; - version = "0.6.3"; + version = "0.7.0"; src = fetchFromGitHub { owner = "foxcpp"; repo = "maddy"; rev = "v${version}"; - sha256 = "sha256-vf+jkXerdwvQhtyiOObBRxh8sYMEcgXC5vNzm5wquBs="; + sha256 = "sha256-EMw07yTFP0aBSuGDWivB8amuxWLFHhYV6J9faTEW5z4="; }; - vendorSha256 = "sha256-10cLNl9jWYX8XIKQkCxJ+/ymZC1YJRHUJWZQhq7zeV4="; + vendorSha256 = "sha256-LyfkETZPkhJKN8CEivNp7Se4IBpzyAtmCM1xil4n2po="; tags = [ "libpam" ]; diff --git a/pkgs/servers/mail/public-inbox/default.nix b/pkgs/servers/mail/public-inbox/default.nix index a70ef432fc49b..02ab293c1af17 100644 --- a/pkgs/servers/mail/public-inbox/default.nix +++ b/pkgs/servers/mail/public-inbox/default.nix @@ -6,6 +6,7 @@ , gnumake , highlight , libgit2 +, libxcrypt , man , openssl , pkg-config @@ -17,30 +18,33 @@ , EmailAddressXS , EmailMIME , IOSocketSSL +# FIXME: to be packaged +#, IOSocketSocks , IPCRun , Inline , InlineC , LinuxInotify2 , MailIMAPClient +# FIXME: to be packaged +#, NetNetrc +# FIXME: to be packaged +#, NetNNTP , ParseRecDescent , Plack , PlackMiddlewareReverseProxy +, PlackTestExternalServer , SearchXapian +, TestSimple13 , TimeDate , URI +, XMLTreePP }: let skippedTests = [ - # These tests would fail, and produce "Operation not permitted" - # errors from git, because they use git init --shared. This tries - # to set the setgid bit, which isn't permitted inside build - # sandboxes. - # - # These tests were indentified with - # grep -r shared t/ - "convert-compact" "search" "v2writable" "www_listing" + # fatal: Could not make /tmp/pi-search-9188-DGZM/a.git/branches/ writable by group + "search" # perl5.32.0-public-inbox> t/eml.t ...................... 1/? Cannot parse parameter '=?ISO-8859-1?Q?=20charset=3D=1BOF?=' at t/eml.t line 270. # perl5.32.0-public-inbox> # Failed test 'got wide character by assuming utf-8' # perl5.32.0-public-inbox> # at t/eml.t line 272. @@ -67,6 +71,8 @@ let # expected: anything else # waiting for child to reap grandchild... "spawn" + # Failed to connect to 127.0.0.1 + "v2mirror" ]; testConditions = with lib; @@ -76,11 +82,11 @@ in buildPerlPackage rec { pname = "public-inbox"; - version = "1.8.0"; + version = "1.9.0"; src = fetchurl { url = "https://public-inbox.org/public-inbox.git/snapshot/public-inbox-${version}.tar.gz"; - sha256 = "sha256-laJOOCk5NecIGWesv4D30cLGfijQHVkeo55eNqNKzew="; + sha256 = "sha256-ENnT2YK7rpODII9TqiEYSCp5mpWOnxskeSuAf8Ilqro="; }; outputs = [ "out" "devdoc" "sa_config" ]; @@ -99,12 +105,15 @@ buildPerlPackage rec { DBDSQLite DBI EmailAddressXS - EmailMIME highlight IOSocketSSL + #IOSocketSocks IPCRun Inline InlineC + MailIMAPClient + #NetNetrc + #NetNNTP ParseRecDescent Plack PlackMiddlewareReverseProxy @@ -117,13 +126,16 @@ buildPerlPackage rec { doCheck = !stdenv.isDarwin; nativeCheckInputs = [ - MailIMAPClient curl git openssl pkg-config sqlite xapian + EmailMIME + PlackTestExternalServer + TestSimple13 + XMLTreePP ] ++ lib.optionals stdenv.isLinux [ LinuxInotify2 ]; @@ -137,12 +149,14 @@ buildPerlPackage rec { installTargets = [ "install" ]; postInstall = '' for prog in $out/bin/*; do - wrapProgram $prog --prefix PATH : ${lib.makeBinPath [ - git - /* for InlineC */ - gnumake - stdenv.cc.cc - ]} + wrapProgram $prog \ + --set NIX_CFLAGS_COMPILE_${stdenv.cc.suffixSalt} -I${lib.getDev libxcrypt}/include \ + --prefix PATH : ${lib.makeBinPath [ + git + /* for InlineC */ + gnumake + stdenv.cc + ]} done mv sa_config $sa_config diff --git a/pkgs/servers/matrix-synapse/default.nix b/pkgs/servers/matrix-synapse/default.nix index 47cbb6bf8ef9c..9a4d82823a6c2 100644 --- a/pkgs/servers/matrix-synapse/default.nix +++ b/pkgs/servers/matrix-synapse/default.nix @@ -12,20 +12,20 @@ in with python3.pkgs; buildPythonApplication rec { pname = "matrix-synapse"; - version = "1.84.0"; + version = "1.84.1"; format = "pyproject"; src = fetchFromGitHub { owner = "matrix-org"; repo = "synapse"; rev = "v${version}"; - hash = "sha256-CN/TCyQLlGRNDvsojGltP+GQ4UJiWQZkgQinD/w9Lfc="; + hash = "sha256-6cUy3fAQoIFD7iL24vvlMj4S6s+68plemzH6GKkTGo0="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - hash = "sha256-MikdIo1YghDAvpVX2vUHFmz8WgupUi/TbMPIvYgGFRA="; + hash = "sha256-Rd2BJe4M3NVQJdkYDaiDhqKf4lXIKQyFwqMqVyMHog4="; }; postPatch = '' diff --git a/pkgs/servers/matrix-synapse/matrix-hookshot/default.nix b/pkgs/servers/matrix-synapse/matrix-hookshot/default.nix index bf5cecd821f49..1a7e233c6e89d 100644 --- a/pkgs/servers/matrix-synapse/matrix-hookshot/default.nix +++ b/pkgs/servers/matrix-synapse/matrix-hookshot/default.nix @@ -74,5 +74,6 @@ mkYarnPackage rec { description = "A bridge between Matrix and multiple project management services, such as GitHub, GitLab and JIRA"; maintainers = with maintainers; [ chvp ]; license = licenses.asl20; + platforms = platforms.linux; }; } diff --git a/pkgs/servers/matrix-synapse/matrix-hookshot/package.json b/pkgs/servers/matrix-synapse/matrix-hookshot/package.json index 0c4a0956b61e7..525e9201b791f 100644 --- a/pkgs/servers/matrix-synapse/matrix-hookshot/package.json +++ b/pkgs/servers/matrix-synapse/matrix-hookshot/package.json @@ -1,6 +1,6 @@ { "name": "matrix-hookshot", - "version": "4.0.0", + "version": "4.1.0", "description": "A bridge between Matrix and multiple project management services, such as GitHub, GitLab and JIRA.", "main": "lib/app.js", "repository": "https://github.com/matrix-org/matrix-hookshot", @@ -35,10 +35,10 @@ "test:cover": "nyc --reporter=lcov --reporter=text yarn test", "lint": "yarn run lint:js && yarn run lint:rs", "lint:js": "eslint -c .eslintrc.js 'src/**/*.ts' 'tests/**/*.ts' 'web/**/*.ts' 'web/**/*.tsx'", - "lint:rs": "cargo fmt --all -- --check", - "lint:rs:apply": "cargo fmt --all", - "generate-default-config": "ts-node src/Config/Defaults.ts --config > config.sample.yml", - "validate-config": "ts-node src/Config/Config.ts" + "lint:rs": "cargo fmt --all -- --check && cargo clippy -- -Dwarnings", + "lint:rs:apply": "cargo clippy --fix && cargo fmt --all", + "generate-default-config": "ts-node src/config/Defaults.ts --config > config.sample.yml", + "validate-config": "ts-node src/config/Config.ts" }, "dependencies": { "@alloc/quick-lru": "^5.2.0", @@ -46,6 +46,7 @@ "@octokit/auth-token": "^2.4.5", "@octokit/rest": "^18.10.0", "@octokit/webhooks": "^9.1.2", + "@sentry/node": "^7.52.1", "ajv": "^8.11.0", "axios": "^0.24.0", "cors": "^2.8.5", @@ -68,7 +69,7 @@ "source-map-support": "^0.5.21", "string-argv": "^0.3.1", "tiny-typed-emitter": "^2.1.0", - "vm2": "^3.9.17", + "vm2": "^3.9.18", "winston": "^3.3.3", "xml2js": "^0.5.0", "yaml": "^2.2.2" @@ -87,15 +88,15 @@ "@types/micromatch": "^4.0.1", "@types/mime": "^2.0.3", "@types/mocha": "^9.0.0", + "@types/node": "18", "@types/node-emoji": "^1.8.1", "@types/uuid": "^8.3.3", "@types/xml2js": "^0.4.11", - "@types/node": "18", - "@typescript-eslint/eslint-plugin": "^5.4.0", - "@typescript-eslint/parser": "^5.4.0", + "@typescript-eslint/eslint-plugin": "^5.59.1", + "@typescript-eslint/parser": "^5.59.1", "@uiw/react-codemirror": "^4.12.3", "chai": "^4.3.4", - "eslint": "^8.3.0", + "eslint": "^8.39.0", "eslint-config-preact": "^1.3.0", "eslint-plugin-mocha": "^9.0.0", "mini.css": "^3.0.1", diff --git a/pkgs/servers/matrix-synapse/matrix-hookshot/pin.json b/pkgs/servers/matrix-synapse/matrix-hookshot/pin.json index 106278288dfff..c7f2b263ed315 100644 --- a/pkgs/servers/matrix-synapse/matrix-hookshot/pin.json +++ b/pkgs/servers/matrix-synapse/matrix-hookshot/pin.json @@ -1,6 +1,6 @@ { - "version": "4.0.0", - "srcHash": "imZMYp1bgt5N8hPO6S4V133DoPCQoJ5TnMCG905qT1s=", - "yarnHash": "0rnb7i6v7pz2wywjrj0nb2c9am94pbxin1jiykj5p6czmzw289kl", - "cargoHash": "ldz5b7bC7qWRMVDixA4d5ls5Y1ONvElruRC+/TgQWr8=" + "version": "4.1.0", + "srcHash": "TcLdZ9pSZ5T2sI6q1c+BpIFR647HUrwvamuQZ333NOg=", + "yarnHash": "1ydxjmr241kwhsacg4cx05951nijy6ch687xgqw4515islpb89v3", + "cargoHash": "s7NOZ2fKp6i2m4HbbcIWZcZgP8n45nGZqWGG9cV+FWw=" } diff --git a/pkgs/servers/mattermost/default.nix b/pkgs/servers/mattermost/default.nix index 97d8f06850ce6..489f015c5b460 100644 --- a/pkgs/servers/mattermost/default.nix +++ b/pkgs/servers/mattermost/default.nix @@ -7,21 +7,21 @@ buildGoModule rec { pname = "mattermost"; - version = "7.8.5"; + version = "7.10.2"; src = fetchFromGitHub { owner = "mattermost"; repo = "mattermost-server"; rev = "v${version}"; - hash = "sha256-qC6tJcWruiTbWXKuACuhl0kwbRdPVXfUlaFJx4DiQgE="; + hash = "sha256-gccWFcG+Jc/77nN9hiV/2gUcY5w0IzOktykbGgafBD0="; }; webapp = fetchurl { url = "https://releases.mattermost.com/${version}/mattermost-${version}-linux-amd64.tar.gz"; - hash = "sha256-ojAGa4tZ5aZp+4XSW6ycDvJ295zH8GaYsA9w6z8n2WM="; + hash = "sha256-T2lyg4BtArx813kk6edQ7AX3ZmA7cTsrJuWs7k6WYPU="; }; - vendorHash = "sha256-VvGLYOESyoBpFmIibHWxazliHcscMxf3KcQ46NQ4syk="; + vendorHash = "sha256-7YxbBmkKeb20a3BNllB3RtvjAJLZzoC2OBK4l1Ud1bw="; subPackages = [ "cmd/mattermost" ]; diff --git a/pkgs/servers/mautrix-telegram/default.nix b/pkgs/servers/mautrix-telegram/default.nix index 5256345d44fe6..1f1404f20d8ce 100644 --- a/pkgs/servers/mautrix-telegram/default.nix +++ b/pkgs/servers/mautrix-telegram/default.nix @@ -9,11 +9,11 @@ let python = python3.override { packageOverrides = self: super: { tulir-telethon = self.telethon.overridePythonAttrs (oldAttrs: rec { - version = "1.28.0a3"; + version = "1.28.0a9"; pname = "tulir-telethon"; src = fetchPypi { inherit pname version; - hash = "sha256-N1XQGpjfyUqcT+bsSBxC5Purvnd/+4NzVzMhiaq5yDo="; + hash = "sha256-7lRoJYhy9c8RxJTW1/7SrNtA36mwIrPcyRMPVNhWJTk="; }; doCheck = false; }); @@ -22,14 +22,14 @@ let in python.pkgs.buildPythonPackage rec { pname = "mautrix-telegram"; - version = "0.13.0"; + version = "0.14.0"; disabled = python.pythonOlder "3.8"; src = fetchFromGitHub { owner = "mautrix"; repo = "telegram"; rev = "refs/tags/v${version}"; - hash = "sha256-AfCo2uHOcSNCWXgrCLzJwl0Dj8n9Asdqm19wk0OeXgQ="; + hash = "sha256-OPWa3jqaLnV7M1Q77N10A3HT65dNon6RWE5mbQRvjEs="; }; format = "setuptools"; diff --git a/pkgs/servers/memcached/default.nix b/pkgs/servers/memcached/default.nix index 037f5f81f5237..bc8a39fd4cfa3 100644 --- a/pkgs/servers/memcached/default.nix +++ b/pkgs/servers/memcached/default.nix @@ -1,12 +1,12 @@ {lib, stdenv, fetchurl, cyrus_sasl, libevent, nixosTests }: stdenv.mkDerivation rec { - version = "1.6.19"; + version = "1.6.20"; pname = "memcached"; src = fetchurl { url = "https://memcached.org/files/${pname}-${version}.tar.gz"; - sha256 = "sha256-L9SLBHFGOYsHOliOl5F9m8kIzlGXhYDY4L7aoSO0xw0="; + sha256 = "sha256-j2BPjjoXVjfcHwad5vonORFoUMn4Hjdk8vrJo7J74wc="; }; configureFlags = [ diff --git a/pkgs/servers/memos/default.nix b/pkgs/servers/memos/default.nix index 6cdc3b72c3265..1c2a17fd638c1 100644 --- a/pkgs/servers/memos/default.nix +++ b/pkgs/servers/memos/default.nix @@ -1,12 +1,12 @@ { fetchFromGitHub, buildGoModule, jq, buildNpmPackage, lib, makeWrapper }: let - version = "0.13.0"; + version = "0.13.1"; src = fetchFromGitHub { owner = "usememos"; repo = "memos"; rev = "v${version}"; - sha256 = "7rMs1jFyGlCfc7LVZvsQ9tuBLsWP/S9DXYcEPZ86tKw="; + sha256 = "VUY81ir7cPtuHodJhkSz3bmnoIeQH20kbg+duDcjfwM="; }; frontend = buildNpmPackage { @@ -15,7 +15,7 @@ let src = "${src}/web"; - npmDepsHash = "sha256-vgO5HWbV/oR1GenK9q5a1bhlTSJqtF4HBcQTZ3DqZq8="; + npmDepsHash = "sha256-36UcHE98dsGvYQWLIc/xgP8Q0IyJ7la0Qoo3lZqUcmw="; postPatch = '' cp ${./package-lock.json} package-lock.json diff --git a/pkgs/servers/memos/package-lock.json b/pkgs/servers/memos/package-lock.json index a42aee0dca65a..c6c8d9149abd3 100644 --- a/pkgs/servers/memos/package-lock.json +++ b/pkgs/servers/memos/package-lock.json @@ -33,7 +33,6 @@ "zustand": "^4.3.6" }, "devDependencies": { - "@playwright/test": "^1.32.2", "@types/lodash-es": "^4.17.5", "@types/node": "^18.0.3", "@types/qs": "^6.9.7", @@ -1099,25 +1098,6 @@ "node": ">= 8" } }, - "node_modules/@playwright/test": { - "version": "1.32.3", - "resolved": "https://registry.npmjs.org/@playwright/test/-/test-1.32.3.tgz", - "integrity": "sha512-BvWNvK0RfBriindxhLVabi8BRe3X0J9EVjKlcmhxjg4giWBD/xleLcg2dz7Tx0agu28rczjNIPQWznwzDwVsZQ==", - "dev": true, - "dependencies": { - "@types/node": "*", - "playwright-core": "1.32.3" - }, - "bin": { - "playwright": "cli.js" - }, - "engines": { - "node": ">=14" - }, - "optionalDependencies": { - "fsevents": "2.3.2" - } - }, "node_modules/@popperjs/core": { "version": "2.11.7", "resolved": "https://registry.npmjs.org/@popperjs/core/-/core-2.11.7.tgz", @@ -4564,18 +4544,6 @@ "node": ">= 6" } }, - "node_modules/playwright-core": { - "version": "1.32.3", - "resolved": "https://registry.npmjs.org/playwright-core/-/playwright-core-1.32.3.tgz", - "integrity": "sha512-SB+cdrnu74ZIn5Ogh/8278ngEh9NEEV0vR4sJFmK04h2iZpybfbqBY0bX6+BLYWVdV12JLLI+JEFtSnYgR+mWg==", - "dev": true, - "bin": { - "playwright": "cli.js" - }, - "engines": { - "node": ">=14" - } - }, "node_modules/postcss": { "version": "8.4.22", "resolved": "https://registry.npmjs.org/postcss/-/postcss-8.4.22.tgz", diff --git a/pkgs/servers/meteor/default.nix b/pkgs/servers/meteor/default.nix index 470c73c5c6dc4..04f0ac3ac807c 100644 --- a/pkgs/servers/meteor/default.nix +++ b/pkgs/servers/meteor/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchurl, zlib, patchelf, runtimeShell }: +{ stdenv, lib, fetchurl, zlib, curl, xz, patchelf, runtimeShell }: let version = "2.7.3"; @@ -66,7 +66,7 @@ stdenv.mkDerivation { popd substituteInPlace $out/tools/cli/main.js \ --replace "@INTERPRETER@" "$(cat $NIX_CC/nix-support/dynamic-linker)" \ - --replace "@RPATH@" "${lib.makeLibraryPath [ stdenv.cc.cc zlib ]}" \ + --replace "@RPATH@" "${lib.makeLibraryPath [ stdenv.cc.cc zlib curl xz ]}" \ --replace "@PATCHELF@" "${patchelf}/bin/patchelf" # Patch node. @@ -79,7 +79,7 @@ stdenv.mkDerivation { for p in $out/dev_bundle/mongodb/bin/mongo{,d}; do patchelf \ --set-interpreter $(cat $NIX_CC/nix-support/dynamic-linker) \ - --set-rpath "$(patchelf --print-rpath $p):${lib.makeLibraryPath [ stdenv.cc.cc zlib ]}" \ + --set-rpath "$(patchelf --print-rpath $p):${lib.makeLibraryPath [ stdenv.cc.cc zlib curl xz ]}" \ $p done diff --git a/pkgs/servers/minio/default.nix b/pkgs/servers/minio/default.nix index 37fdd28e702bb..775b4353ab61a 100644 --- a/pkgs/servers/minio/default.nix +++ b/pkgs/servers/minio/default.nix @@ -15,16 +15,16 @@ let in buildGoModule rec { pname = "minio"; - version = "2023-05-18T00-05-36Z"; + version = "2023-05-27T05-56-19Z"; src = fetchFromGitHub { owner = "minio"; repo = "minio"; rev = "RELEASE.${version}"; - sha256 = "sha256-VOv5gYjoHPO4MuiQHN7nX5IghoOeqj3/vu/vILGv/yA="; + sha256 = "sha256-HwyPrXywhJ0D/eelcPOE8CPrEeJkaLr7wMdW5O+8cZA="; }; - vendorHash = "sha256-ZwkToIEzbU1PYxxQCGc+Zkiu7SkO83oJFzwi4Qyqzn0="; + vendorHash = "sha256-jvJM4I5ruDYwJsB258aZ3UP9FjtzYc0XSYpXdjqafMI="; doCheck = false; diff --git a/pkgs/servers/mir/default.nix b/pkgs/servers/mir/default.nix index 98b5fd39e5f76..013c3190e3b80 100644 --- a/pkgs/servers/mir/default.nix +++ b/pkgs/servers/mir/default.nix @@ -3,6 +3,7 @@ , fetchFromGitHub , fetchpatch , gitUpdater +, testers , cmake , pkg-config , python3 @@ -35,26 +36,17 @@ , gtest , umockdev , wlcs +, validatePkgConfig }: -let - doCheck = stdenv.buildPlatform.canExecute stdenv.hostPlatform; - pythonEnv = python3.withPackages(ps: with ps; [ - pillow - ] ++ lib.optionals doCheck [ - pygobject3 - python-dbusmock - ]); -in - -stdenv.mkDerivation rec { +stdenv.mkDerivation (finalAttrs: { pname = "mir"; version = "2.13.0"; src = fetchFromGitHub { owner = "MirServer"; repo = "mir"; - rev = "v${version}"; + rev = "v${finalAttrs.version}"; hash = "sha256-Ip8p4mjcgmZQJTU4MNvWkTTtSJc+cCL3x1mMDFlZrVY="; }; @@ -109,7 +101,13 @@ stdenv.mkDerivation rec { libxslt lttng-ust # lttng-gen-tp pkg-config - pythonEnv + (python3.withPackages (ps: with ps; [ + pillow + ] ++ lib.optionals finalAttrs.doCheck [ + pygobject3 + python-dbusmock + ])) + validatePkgConfig ]; buildInputs = [ @@ -138,21 +136,23 @@ stdenv.mkDerivation rec { xorg.libXcursor xorg.xorgproto xwayland - ] ++ lib.optionals doCheck [ - gtest - umockdev - wlcs ]; nativeCheckInputs = [ dbus ]; + checkInputs = [ + gtest + umockdev + wlcs + ]; + buildFlags = [ "all" "doc" ]; cmakeFlags = [ "-DMIR_PLATFORM='gbm-kms;x11;eglstream-kms;wayland'" - "-DMIR_ENABLE_TESTS=${if doCheck then "ON" else "OFF"}" + "-DMIR_ENABLE_TESTS=${if finalAttrs.doCheck then "ON" else "OFF"}" # BadBufferTest.test_truncated_shm_file *doesn't* throw an error as the test expected, mark as such # https://github.com/MirServer/mir/pull/1947#issuecomment-811810872 "-DMIR_SIGBUS_HANDLER_ENVIRONMENT_BROKEN=ON" @@ -163,7 +163,7 @@ stdenv.mkDerivation rec { "-DMIR_BUILD_PLATFORM_TEST_HARNESS=OFF" ]; - inherit doCheck; + doCheck = stdenv.buildPlatform.canExecute stdenv.hostPlatform; preCheck = '' # Needs to be exactly /tmp so some failing tests don't get run, don't know why they fail yet @@ -174,6 +174,7 @@ stdenv.mkDerivation rec { outputs = [ "out" "dev" "doc" ]; passthru = { + tests.pkg-config = testers.testMetaPkgConfig finalAttrs.finalPackage; updateScript = gitUpdater { rev-prefix = "v"; }; @@ -190,8 +191,22 @@ stdenv.mkDerivation rec { meta = with lib; { description = "A display server and Wayland compositor developed by Canonical"; homepage = "https://mir-server.io"; + changelog = "https://github.com/MirServer/mir/releases/tag/v${finalAttrs.version}"; license = licenses.gpl2Plus; maintainers = with maintainers; [ onny OPNA2608 ]; platforms = platforms.linux; + pkgConfigModules = [ + "miral" + "mircommon" + "mircookie" + "mircore" + "miroil" + "mirplatform" + "mir-renderer-gl-dev" + "mirrenderer" + "mirserver" + "mirtest" + "mirwayland" + ]; }; -} +}) diff --git a/pkgs/servers/monitoring/mackerel-agent/default.nix b/pkgs/servers/monitoring/mackerel-agent/default.nix index 7451d0e49b026..e205c9168ee14 100644 --- a/pkgs/servers/monitoring/mackerel-agent/default.nix +++ b/pkgs/servers/monitoring/mackerel-agent/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "mackerel-agent"; - version = "0.75.2"; + version = "0.76.0"; src = fetchFromGitHub { owner = "mackerelio"; repo = pname; rev = "v${version}"; - sha256 = "sha256-xRujItV8xgIiQZktcEeq+hCDaD7HaHFEOsbtzmWfLQQ="; + sha256 = "sha256-IfrJd7EQ9t/whypxyW7uwUQ5O1pcqDgRf1AbG6d9LPw="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/servers/monitoring/nagios/plugins/check_ssl_cert.nix b/pkgs/servers/monitoring/nagios/plugins/check_ssl_cert.nix index 2c57a4b7d89ff..50f4d29d39113 100644 --- a/pkgs/servers/monitoring/nagios/plugins/check_ssl_cert.nix +++ b/pkgs/servers/monitoring/nagios/plugins/check_ssl_cert.nix @@ -17,13 +17,13 @@ stdenv.mkDerivation rec { pname = "check_ssl_cert"; - version = "2.69.0"; + version = "2.70.0"; src = fetchFromGitHub { owner = "matteocorti"; repo = "check_ssl_cert"; rev = "refs/tags/v${version}"; - hash = "sha256-85bm/CvD5Kp9HKpf9czkqSEDYwmm8W+zd/uc88fWzPQ="; + hash = "sha256-mr6tCZfnAM0e8cEtyen3oiV0Vt3cR/Z80RJ4NeMUaMs="; }; nativeBuildInputs = [ diff --git a/pkgs/servers/monitoring/prometheus/domain-exporter.nix b/pkgs/servers/monitoring/prometheus/domain-exporter.nix index 6fffc192e27d2..8cd81146010c5 100644 --- a/pkgs/servers/monitoring/prometheus/domain-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/domain-exporter.nix @@ -2,24 +2,16 @@ buildGoModule rec { pname = "domain-exporter"; - version = "1.17.1"; + version = "1.21.1"; src = fetchFromGitHub { owner = "caarlos0"; repo = "domain_exporter"; rev = "v${version}"; - hash = "sha256-18r+jUdVcv7hA9KdWkgvu2tNUIGf9f1uj2cwwMDnAs8="; + hash = "sha256-qZle54BxKdPuVFNEGmXBNU93yF/MESUnW1a24BRxlZ8="; }; - patches = [ - (fetchpatch { - url = "https://github.com/caarlos0/domain_exporter/commit/32815b0956056c5c14313d0b860d1e9db754e545.patch"; - hash = "sha256-iEYnJ4BU+MWQd0BgKmRb8RNj/lH2V/Z9uwFS2muR4Go="; - name = "sg_domains.patch"; - }) - ]; - - vendorSha256 = "sha256-LHs2DSLNe+E3NUXZS7TV5M53ueUbCjjNM87UPRTaCpo="; + vendorHash = "sha256-UO4fCJD3PldU2wQ9264OLKHP10c0pKPsOc/8gP5ddW4="; doCheck = false; # needs internet connection diff --git a/pkgs/servers/monitoring/prometheus/exportarr/default.nix b/pkgs/servers/monitoring/prometheus/exportarr/default.nix index bcfd2ebee475e..49dc399346e42 100644 --- a/pkgs/servers/monitoring/prometheus/exportarr/default.nix +++ b/pkgs/servers/monitoring/prometheus/exportarr/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "exportarr"; - version = "1.3.2"; + version = "1.4.0"; src = fetchFromGitHub { owner = "onedr0p"; repo = "exportarr"; rev = "v${version}"; - hash = "sha256-99ap7B5EfMhuSGmT/JNI+CTPv7lTdjxibC0ndYWyNoA="; + hash = "sha256-7ev6twbavAhSZWJZCwjpbEz2STRYifLrPCFyel+Ml5A="; }; - vendorHash = "sha256-2Eb8FhbRu5M5u8HGa2bgAvZZkwHycBu8UiNKHG5/fFw="; + vendorHash = "sha256-3JObDCeRjhws6U4DRky7BVEleCmxadLmPnTp8PX6S7A="; subPackages = [ "cmd/exportarr" ]; diff --git a/pkgs/servers/monitoring/prometheus/gitlab-ci-pipelines-exporter.nix b/pkgs/servers/monitoring/prometheus/gitlab-ci-pipelines-exporter.nix index 31e511706474b..df3bb356cd3f9 100644 --- a/pkgs/servers/monitoring/prometheus/gitlab-ci-pipelines-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/gitlab-ci-pipelines-exporter.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "gitlab-ci-pipelines-exporter"; - version = "0.5.4"; + version = "0.5.5"; src = fetchFromGitHub { owner = "mvisonneau"; repo = pname; rev = "v${version}"; - sha256 = "sha256-sVXLcz//1RLYOmKtH6u4tCPS8oqV0vOkmQLpWNBiUQY="; + sha256 = "sha256-TeXEfcmDHKgy5mGdixrIecxKO1rrg7+EWRIqzMYh3sU="; }; subPackages = [ "cmd/${pname}" ]; @@ -17,7 +17,7 @@ buildGoModule rec { "-X main.version=v${version}" ]; - vendorSha256 = "sha256-uyjj0Yh/bIvWvh76TEasgjJg9Dgj/GHgn3BOsO2peT0="; + vendorHash = "sha256-TXFwfqyvCAEn24vtUBcFABzIg0KaYlstiFwS7y6WbKo="; doCheck = true; meta = with lib; { diff --git a/pkgs/servers/monitoring/prometheus/graphite-exporter.nix b/pkgs/servers/monitoring/prometheus/graphite-exporter.nix new file mode 100644 index 0000000000000..54ad80228191c --- /dev/null +++ b/pkgs/servers/monitoring/prometheus/graphite-exporter.nix @@ -0,0 +1,36 @@ +{ lib, buildGoModule, fetchFromGitHub, nixosTests }: + +buildGoModule rec { + pname = "graphite-exporter"; + version = "0.13.3"; + + src = fetchFromGitHub { + owner = "prometheus"; + repo = "graphite_exporter"; + rev = "v${version}"; + hash = "sha256-ZsRN/h96Lt0znXmtMGjR6TXKa1ka0rbk/XXNVolBNk8="; + }; + + vendorHash = "sha256-vW/iODlOWD8JmoDO6Ty+Eajoj0IAHak/abWW2OSp34M="; + + preCheck = let + skippedTests = [ + "TestBacktracking" + "TestInconsistentLabelsE2E" + "TestIssue111" + "TestIssue61" + "TestIssue90" + ]; + in '' + buildFlagsArray+=("-run" "[^(${builtins.concatStringsSep "|" skippedTests})]") + ''; + + passthru.tests = { inherit (nixosTests.prometheus-exporters) graphite; }; + + meta = { + description = "An exporter for metrics exported in the Graphite plaintext protocol"; + homepage = "https://github.com/prometheus/graphite_exporter"; + license = lib.licenses.asl20; + maintainers = [ lib.maintainers.misterio77 ]; + }; +} diff --git a/pkgs/servers/monitoring/prometheus/nextcloud-exporter.nix b/pkgs/servers/monitoring/prometheus/nextcloud-exporter.nix index 92b04b08a5bfc..cbe5c6ebbaced 100644 --- a/pkgs/servers/monitoring/prometheus/nextcloud-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/nextcloud-exporter.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "prometheus-nextcloud-exporter"; - version = "0.6.0"; + version = "0.6.1"; src = fetchFromGitHub { owner = "xperimental"; repo = "nextcloud-exporter"; rev = "v${version}"; - sha256 = "sha256-/EwQSxYDaf7B8A48aelf1yYbM7Vw6ntoz1VuYM2HDEc="; + sha256 = "sha256-8Pz1Xa8P0T+5P4qCoyRyRqPtAaSiZw4BV+rSZf4exC0="; }; - vendorSha256 = "sha256-b05N5TXsRHD8h3q+ckxaVizq+A7VqkDWOSb0LOMGCHM="; + vendorHash = "sha256-NIJH5Ya+fZ+37y+Lim/WizNCOYk1lpPRf6u70IoiFZk="; passthru.tests = { inherit (nixosTests.prometheus-exporters) nextcloud; }; diff --git a/pkgs/servers/monitoring/prometheus/node-exporter.nix b/pkgs/servers/monitoring/prometheus/node-exporter.nix index 86ed09f3bc784..f4939370864e4 100644 --- a/pkgs/servers/monitoring/prometheus/node-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/node-exporter.nix @@ -5,17 +5,17 @@ buildGoModule rec { pname = "node_exporter"; - version = "1.5.0"; + version = "1.6.0"; rev = "v${version}"; src = fetchFromGitHub { inherit rev; owner = "prometheus"; repo = "node_exporter"; - sha256 = "sha256-jzgf7XVqtqHf5Uqkcr/0epC0R0fw7l7acr+F8jZ6M68="; + sha256 = "sha256-Aw1tdaiyr3wv3Ti3CFn2T80WRjEZaACwotKKJGY9I6Y="; }; - vendorSha256 = "sha256-k4Wolrp/mebwA6ZLftCNVFOdHoXHcJZI9JWrhBxX5Pk="; + vendorHash = "sha256-hn2cMKhLl5qsm4sZErs6PXTs8yajowxw9a9vtHe5cAk="; # FIXME: tests fail due to read-only nix store doCheck = false; diff --git a/pkgs/servers/monitoring/prometheus/prom2json.nix b/pkgs/servers/monitoring/prometheus/prom2json.nix index ade0f87c62f1f..5778bdd589dae 100644 --- a/pkgs/servers/monitoring/prometheus/prom2json.nix +++ b/pkgs/servers/monitoring/prometheus/prom2json.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "prom2json"; - version = "1.3.2"; + version = "1.3.3"; src = fetchFromGitHub { rev = "v${version}"; owner = "prometheus"; repo = "prom2json"; - sha256 = "sha256-5RPpgUEFLecu0qRg7KSNLwdUEiXeebrGdP/udCtq4z0="; + sha256 = "sha256-VwJv2Y+YrlhLRx0lRPtHTzjvSz7GPfADCZibkQU6S1Y="; }; - vendorSha256 = "sha256-fPGkqrnl21as1xiT279qPzkz01tDNOSMcsm/DSNHDU0="; + vendorHash = "sha256-m9f3tCX21CMdcXcUcLFOxgs9oDR2Uaj5u22eJPDmpeE="; meta = with lib; { description = "Tool to scrape a Prometheus client and dump the result as JSON"; diff --git a/pkgs/servers/monitoring/prometheus/pushgateway.nix b/pkgs/servers/monitoring/prometheus/pushgateway.nix index feda083c85de9..5c7aef8dd059d 100644 --- a/pkgs/servers/monitoring/prometheus/pushgateway.nix +++ b/pkgs/servers/monitoring/prometheus/pushgateway.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "pushgateway"; - version = "1.5.1"; + version = "1.6.0"; src = fetchFromGitHub { owner = "prometheus"; repo = "pushgateway"; rev = "v${version}"; - sha256 = "sha256-UnkSv0ZGNFqEQX+QeCySN5XeGbM2hCJGgWxry5I+3tg="; + sha256 = "sha256-sJ4TTyo+A3CEUcTJv3LlUU60pc/a/PgB0Mk6R5wpTgM="; }; - vendorSha256 = "sha256-wEKk7Jrf14oJzP6MSRJidOUUgAbPFoBOmqPrXJg86FI="; + vendorHash = "sha256-oDvFp7FYam/hsiEesfTuNgXciH4JAUKkMiECn4FPqmE="; ldflags = [ "-s" diff --git a/pkgs/servers/monitoring/telegraf/default.nix b/pkgs/servers/monitoring/telegraf/default.nix index 508f5ee3b0707..4f8108472dc52 100644 --- a/pkgs/servers/monitoring/telegraf/default.nix +++ b/pkgs/servers/monitoring/telegraf/default.nix @@ -43,6 +43,6 @@ buildGoModule rec { homepage = "https://www.influxdata.com/time-series-platform/telegraf/"; changelog = "https://github.com/influxdata/telegraf/blob/${src.rev}/CHANGELOG.md"; license = licenses.mit; - maintainers = with maintainers; [ mic92 roblabla timstott ]; + maintainers = with maintainers; [ mic92 roblabla timstott zowoq ]; }; } diff --git a/pkgs/servers/monitoring/thanos/default.nix b/pkgs/servers/monitoring/thanos/default.nix index 240b77168d35f..09c35def8801a 100644 --- a/pkgs/servers/monitoring/thanos/default.nix +++ b/pkgs/servers/monitoring/thanos/default.nix @@ -1,4 +1,4 @@ -{ lib, buildGoModule, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub, fetchpatch }: buildGoModule rec { pname = "thanos"; version = "0.31.0"; @@ -10,7 +10,15 @@ buildGoModule rec { sha256 = "sha256-EJZGc4thu0WhVSSRolIRYg39S81Cgm+JHwpW5eE7mDc="; }; - vendorHash = "sha256-bNQwDttJ7YuQFrpp0alqe37/lue0CX5gB2UDRWWtTXQ="; + patches = [ + # https://github.com/thanos-io/thanos/pull/6126 + (fetchpatch { + url = "https://github.com/thanos-io/thanos/commit/a4c218bd690259fc0c78fe67e0739bd33d38541e.patch"; + hash = "sha256-Hxc1s5IXAyw01/o4JvOXuyYuOFy0+cBUv3OkRv4DCXs="; + }) + ]; + + vendorHash = "sha256-8+MUMux6v/O2syVyTx758yUBfJkertzibz6yFB05nWk="; doCheck = true; diff --git a/pkgs/servers/networking/rustus/default.nix b/pkgs/servers/networking/rustus/default.nix new file mode 100644 index 0000000000000..a656a80958f54 --- /dev/null +++ b/pkgs/servers/networking/rustus/default.nix @@ -0,0 +1,71 @@ +{ stdenv +, lib +, fetchFromGitHub +, rustPlatform +, nix-update-script +, pkg-config +, openssl +, Security +}: + +let + pname = "rustus"; + version = "0.7.2"; +in +rustPlatform.buildRustPackage { + inherit pname version; + + src = fetchFromGitHub { + owner = "s3rius"; + repo = pname; + rev = version; + hash = "sha256-In/GKtQbp52Zg1cePMJds9aagS3Ga/CKIM+k2efFnKs="; + }; + + cargoHash = "sha256-6pOXiTRquxumoS8fD/yjZI4fh8mGeF2XT4rvkjx0AuU="; + + env.OPENSSL_NO_VENDOR = 1; + + nativeBuildInputs = [ + pkg-config + ]; + + buildInputs = [ + openssl + ] ++ lib.optionals stdenv.isDarwin [ + Security + ]; + + passthru.updateScript = nix-update-script { }; + + # too many tests fail for now + # doCheck = false; + # checkFlags = [ + # # tries to make a network access + # "--skip=tests::curl_http_ockam" + # "--skip=medium_file_transfer" + # "--skip=medium_file_transfer_large_chunks" + # "--skip=medium_file_transfer_small_chunks" + # "--skip=tiny_file_transfer" + # "--skip=tiny_file_transfer_small_chunks" + # # tries to do IO + # "--skip=cli_state::tests::integration" + # "--skip=cli_state::tests::test_create_default_identity_state" + # "--skip=cli_state::tests::test_create_named_identity_state" + # "--skip=kafka::integration_test::test::producer__flow_with_mock_kafka__content_encryption_and_decryption" + # "--skip=kafka::portal_worker::test::kafka_portal_worker__metadata_exchange__response_changed" + # "--skip=full_flow" + # "--skip=run::parser::tests::detect_circular_dependency" + # "--skip=run::parser::tests::test_parse_config_with_depends_on" + # "--skip=util::tests::test_process_multi_addr" + # ]; + + + meta = with lib; { + description = "TUS protocol implementation in Rust."; + homepage = "https://s3rius.github.io/rustus/"; + license = licenses.asl20; + maintainers = with maintainers; [ happysalada ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/servers/nitter/default.nix b/pkgs/servers/nitter/default.nix index aceceae83bc03..97966eed147f1 100644 --- a/pkgs/servers/nitter/default.nix +++ b/pkgs/servers/nitter/default.nix @@ -7,13 +7,13 @@ nimPackages.buildNimPackage rec { pname = "nitter"; - version = "unstable-2023-04-21"; + version = "unstable-2023-05-19"; src = fetchFromGitHub { owner = "zedeus"; repo = "nitter"; - rev = "2254a0728c587ebcec51ff08da0bf145606a629e"; - hash = "sha256-d4KYBCcYbfvEtOqa1umcXmYsBRvhLgpHVoCUfY0XdXI="; + rev = "e3b3b38a2d43a83b5fc2239ab41e864ee686fb2f"; + hash = "sha256-1BEZcrraPc9qOWLy3Bq8M8G5P4fUmb2IX+T+cStHpmQ="; }; patches = [ diff --git a/pkgs/servers/nosql/ferretdb/default.nix b/pkgs/servers/nosql/ferretdb/default.nix index c7c0bdfe87047..c2de7c0404d7d 100644 --- a/pkgs/servers/nosql/ferretdb/default.nix +++ b/pkgs/servers/nosql/ferretdb/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "ferretdb"; - version = "1.2.1"; + version = "1.3.0"; src = fetchFromGitHub { owner = "FerretDB"; repo = "FerretDB"; rev = "v${version}"; - sha256 = "sha256-j3gEC4/i+C35P8wf/A9lA5rnUB669/J+GpN/iiyjSlU="; + sha256 = "sha256-V33NeNpQZFUN/aUCaaxnCgIYaVgbAI5L6GZQo8ZMvUI="; }; postPatch = '' @@ -19,7 +19,7 @@ buildGoModule rec { echo nixpkgs > build/version/package.txt ''; - vendorSha256 = "sha256-6sddJcNzPxMarP0/QxpeWF0qXR8wT2kU6N6CtGKG1Tk="; + vendorSha256 = "sha256-QoDNQXZGfUq/t8fiovCv0+N9e4shJGpwS3y/z0YXMi4="; CGO_ENABLED = 0; diff --git a/pkgs/servers/nosql/mongodb/4.4.nix b/pkgs/servers/nosql/mongodb/4.4.nix index e1128dd10ab1b..aedd569e07f1c 100644 --- a/pkgs/servers/nosql/mongodb/4.4.nix +++ b/pkgs/servers/nosql/mongodb/4.4.nix @@ -6,8 +6,8 @@ let }; in buildMongoDB { - version = "4.4.19"; - sha256 = "sha256-DqkEOsTGB9gDYPxdEi9Kv3xJDz6XBe3fI59pnI1Upnk="; + version = "4.4.22"; + sha256 = "sha256-xJpRDfeG9zcUuyTDWw8XHRXQ38MLBespAE7knIaDxKg="; patches = [ ./forget-build-dependencies-4-4.patch ./fix-build-with-boost-1.79-4_4.patch diff --git a/pkgs/servers/nosql/mongodb/6.0.nix b/pkgs/servers/nosql/mongodb/6.0.nix index 9f50ce6f0c4b0..d3ecadb049d13 100644 --- a/pkgs/servers/nosql/mongodb/6.0.nix +++ b/pkgs/servers/nosql/mongodb/6.0.nix @@ -6,8 +6,8 @@ let }; in buildMongoDB { - version = "6.0.5"; - sha256 = "sha256-iUY5nbyaoMknBlWy3ItkgY87lHNVbZ1N9ricbzMpWX4="; + version = "6.0.6"; + sha256 = "sha256-/AUe87fCM/BFJy3sPSuRBrOWMoE8zHIGhKYf/5NNCjc="; patches = [ (fetchpatch { name = "mongodb-6.1.0-rc-more-specific-cache-alignment-types.patch"; diff --git a/pkgs/servers/nosql/rethinkdb/default.nix b/pkgs/servers/nosql/rethinkdb/default.nix index 112475d7dd79c..8c83e794f30f0 100644 --- a/pkgs/servers/nosql/rethinkdb/default.nix +++ b/pkgs/servers/nosql/rethinkdb/default.nix @@ -1,22 +1,21 @@ { lib, stdenv, fetchurl, which, m4 -, protobuf, boost170, zlib, curl, openssl, icu, jemalloc, libtool -, python2Packages, makeWrapper +, protobuf, boost, zlib, curl, openssl, icu, jemalloc, libtool +, python3Packages, makeWrapper }: stdenv.mkDerivation rec { pname = "rethinkdb"; - version = "2.4.1"; + version = "2.4.3"; src = fetchurl { url = "https://download.rethinkdb.com/repository/raw/dist/${pname}-${version}.tgz"; - sha256 = "5f1786c94797a0f8973597796e22545849dc214805cf1962ef76969e0b7d495b"; + hash = "sha256-w3iMeicPu0nj2kV4e2vlAHY8GQ+wWeObfe+UVPmkZ08="; }; - postPatch = lib.optionalString stdenv.isDarwin '' - sed -i 's/raise.*No Xcode or CLT version detected.*/version = "7.0.0"/' external/v8_3.30.33.16/build/gyp/pylib/gyp/xcode_emulation.py - - # very meta - substituteInPlace mk/support/pkg/re2.sh --replace "-i '''" "-i" + postPatch = '' + substituteInPlace external/quickjs_*/Makefile \ + --replace "gcc-ar" "${stdenv.cc.targetPrefix}ar" \ + --replace "gcc" "${stdenv.cc.targetPrefix}cc" ''; preConfigure = '' @@ -31,17 +30,17 @@ stdenv.mkDerivation rec { makeFlags = [ "rethinkdb" ]; - buildInputs = [ protobuf boost170 zlib curl openssl icu ] + buildInputs = [ protobuf boost zlib curl openssl icu ] ++ lib.optional (!stdenv.isDarwin) jemalloc ++ lib.optional stdenv.isDarwin libtool; - nativeBuildInputs = [ which m4 python2Packages.python makeWrapper ]; + nativeBuildInputs = [ which m4 python3Packages.python makeWrapper ]; enableParallelBuilding = true; postInstall = '' wrapProgram $out/bin/rethinkdb \ - --prefix PATH ":" "${python2Packages.rethinkdb}/bin" + --prefix PATH ":" "${python3Packages.rethinkdb}/bin" ''; meta = { @@ -54,7 +53,7 @@ stdenv.mkDerivation rec { ''; homepage = "https://rethinkdb.com"; license = lib.licenses.asl20; - platforms = lib.platforms.linux; + platforms = lib.platforms.unix; maintainers = with lib.maintainers; [ thoughtpolice bluescreen303 ]; }; } diff --git a/pkgs/servers/openvscode-server/default.nix b/pkgs/servers/openvscode-server/default.nix index e2b596a067166..a1c7bcb755534 100644 --- a/pkgs/servers/openvscode-server/default.nix +++ b/pkgs/servers/openvscode-server/default.nix @@ -107,6 +107,9 @@ in stdenv.mkDerivation rec { # set offline mirror to yarn cache we created in previous steps yarn --offline config set yarn-offline-mirror "${yarnCache}" + + # set nodedir, so we can build binaries later + npm config set nodedir "${nodejs}" ''; buildPhase = '' @@ -143,7 +146,7 @@ in stdenv.mkDerivation rec { # rebuild binaries, we use npm here, as yarn does not provide an alternative # that would not attempt to try to reinstall everything and break our # patching attempts - npm --prefix ./remote rebuild --build-from-source --nodedir ${nodejs} + npm --prefix ./remote rebuild --build-from-source # run postinstall scripts after patching find . -path "*node_modules" -prune -o \ diff --git a/pkgs/servers/photofield/default.nix b/pkgs/servers/photofield/default.nix new file mode 100644 index 0000000000000..68c6ba15e79fd --- /dev/null +++ b/pkgs/servers/photofield/default.nix @@ -0,0 +1,70 @@ +{ lib +, fetchFromGitHub +, buildGoModule +, buildNpmPackage +, makeWrapper +, exiftool +, ffmpeg +}: + +let + pname = "photofield-ui"; + version = "0.10.3"; + + src = fetchFromGitHub { + owner = "SmilyOrg"; + repo = "photofield"; + rev = "v${version}"; + hash = "sha256-OrLsthhnjX6LWehwiBDRzhCmTp3IBsbu9WKVu0zhgaQ="; + }; + + webui = buildNpmPackage { + inherit src version; + pname = "photofield-ui"; + + sourceRoot = "source/ui"; + + npmDepsHash = "sha256-YVyaZsFh5bolDzMd5rXWrbbXQZBeEIV6Fh/kwN+rvPk="; + + installPhase = '' + mkdir -p $out/share + mv dist $out/share/photofield-ui + ''; + }; +in + +buildGoModule rec { + pname = "photofield"; + inherit version src; + + vendorHash = "sha256-g6jRfPALBAgZVuljq/JiCpea7gZl/8akiabxjRmDsFs="; + + preBuild = '' + cp -r ${webui}/share/photofield-ui ui/dist + ''; + + ldflags = [ + "-s" + "-w" + "-X main.version=${version}" + "-X main.builtBy=Nix" + ]; + + tags = [ "embedstatic" ]; + + doCheck = false; # tries to modify filesytem + + nativeBuildInputs = [ makeWrapper ]; + + postInstall = '' + wrapProgram $out/bin/photofield \ + --prefix PATH : "${lib.makeBinPath [exiftool ffmpeg]}" + ''; + + meta = with lib; { + description = "Experimental fast photo viewer"; + homepage = "https://github.com/SmilyOrg/photofield"; + license = licenses.mit; + maintainers = with maintainers; [ dit7ya ]; + }; +} diff --git a/pkgs/servers/photoprism/backend.nix b/pkgs/servers/photoprism/backend.nix index 2a728b058cdec..c014044311a6f 100644 --- a/pkgs/servers/photoprism/backend.nix +++ b/pkgs/servers/photoprism/backend.nix @@ -19,7 +19,7 @@ buildGoModule rec { substituteInPlace internal/commands/passwd.go --replace '/bin/stty' "${coreutils}/bin/stty" ''; - vendorSha256 = "sha256-59ZwijPCcmhMPeh7v8EdqzraqRx+HhK6VnUk0JvAbbU="; + vendorSha256 = "sha256-jkBGFO18m5OyyMr8M7qeQHcHc9koLudGU5t8vFUBjuE="; subPackages = [ "cmd/photoprism" ]; diff --git a/pkgs/servers/photoprism/default.nix b/pkgs/servers/photoprism/default.nix index 1c9303ff4c539..312772a743695 100644 --- a/pkgs/servers/photoprism/default.nix +++ b/pkgs/servers/photoprism/default.nix @@ -1,14 +1,14 @@ -{ pkgs, lib, stdenv, fetchFromGitHub, fetchzip, darktable, rawtherapee, ffmpeg, libheif, exiftool, makeWrapper, testers }: +{ pkgs, lib, stdenv, fetchFromGitHub, fetchzip, darktable, rawtherapee, ffmpeg, libheif, exiftool, imagemagick, makeWrapper, testers }: let - version = "221118-e58fee0fb"; + version = "230603-378d4746a"; pname = "photoprism"; src = fetchFromGitHub { owner = pname; repo = pname; rev = version; - sha256 = "sha256-Bx9SJLK97uZ/k09LIj8dHwmRetg6krI5iO7mtojV3PU="; + sha256 = "sha256-lywVP4Vvq88g+Yk4BuzOaB+9EbWrxGgIF4lOPW33E1U="; }; libtensorflow = pkgs.callPackage ./libtensorflow.nix { }; @@ -62,7 +62,8 @@ stdenv.mkDerivation { --set PHOTOPRISM_RAWTHERAPEE_BIN ${rawtherapee}/bin/rawtherapee-cli \ --set PHOTOPRISM_HEIFCONVERT_BIN ${libheif}/bin/heif-convert \ --set PHOTOPRISM_FFMPEG_BIN ${ffmpeg}/bin/ffmpeg \ - --set PHOTOPRISM_EXIFTOOL_BIN ${exiftool}/bin/exiftool + --set PHOTOPRISM_EXIFTOOL_BIN ${exiftool}/bin/exiftool \ + --set PHOTOPRISM_IMAGEMAGICK_BIN ${imagemagick}/bin/convert # install frontend ln -s ${frontend}/assets/* ${assets_path} diff --git a/pkgs/servers/photoprism/frontend.nix b/pkgs/servers/photoprism/frontend.nix index 9bf0fc57348ce..1451aa61ed918 100644 --- a/pkgs/servers/photoprism/frontend.nix +++ b/pkgs/servers/photoprism/frontend.nix @@ -8,7 +8,7 @@ buildNpmPackage { cd frontend ''; - npmDepsHash = "sha256-NAtZ85WjiQn9w0B9Y78XL+tSsshHlaXS8+WtojFJmGg"; + npmDepsHash = "sha256-lZpgv3YFF+b9nPJlbG2KdGYC5UMy+VnYqRgz7JLj85g="; installPhase = '' runHook preInstall diff --git a/pkgs/servers/pleroma/default.nix b/pkgs/servers/pleroma/default.nix index 05fe4c7d31b94..2dba16c182ab5 100644 --- a/pkgs/servers/pleroma/default.nix +++ b/pkgs/servers/pleroma/default.nix @@ -8,14 +8,14 @@ beamPackages.mixRelease rec { pname = "pleroma"; - version = "2.5.1"; + version = "2.5.2"; src = fetchFromGitLab { domain = "git.pleroma.social"; owner = "pleroma"; repo = "pleroma"; rev = "v${version}"; - sha256 = "sha256-3iG2s7jVEnhq1kLLgtaHnFmLYBO2Xr5M5jjZfSNA9z4="; + sha256 = "sha256-5qxop/hJj1hIsEcK6vJnI2RnAcLf3tO43B0e0FcNZcA="; }; mixNixDeps = import ./mix.nix { @@ -160,13 +160,6 @@ beamPackages.mixRelease rec { cp ${cfgFile} config/config.exs ''; }; - - crypt = let - version = prev.crypt.version; - in prev.crypt.override { - buildInputs = [ libxcrypt-legacy ]; - postInstall = "mv $out/lib/erlang/lib/crypt-${version}/priv/{hex-source-crypt-${version},crypt}.so"; - }; }); }; diff --git a/pkgs/servers/pleroma/mix.nix b/pkgs/servers/pleroma/mix.nix index d3a07fe26696d..cd5bb10b79cdd 100644 --- a/pkgs/servers/pleroma/mix.nix +++ b/pkgs/servers/pleroma/mix.nix @@ -281,19 +281,6 @@ let beamDeps = [ ecto ]; }; - crypt = buildRebar3 rec { - name = "crypt"; - version = "1.0.1"; - - src = fetchHex { - pkg = "${name}"; - version = "${version}"; - sha256 = "10ir7nsa0dkn5jr0w9x2m38jc73aym7llz2pnkwxk9f747izz3cn"; - }; - - beamDeps = []; - }; - custom_base = buildMix rec { name = "custom_base"; version = "0.2.1"; diff --git a/pkgs/servers/plex/raw.nix b/pkgs/servers/plex/raw.nix index 3d97e22eca5cd..6714d1d35b45e 100644 --- a/pkgs/servers/plex/raw.nix +++ b/pkgs/servers/plex/raw.nix @@ -12,16 +12,16 @@ # server, and the FHS userenv and corresponding NixOS module should # automatically pick up the changes. stdenv.mkDerivation rec { - version = "1.32.1.6999-91e1e2e2c"; + version = "1.32.3.7162-b0a36929b"; pname = "plexmediaserver"; # Fetch the source src = if stdenv.hostPlatform.system == "aarch64-linux" then fetchurl { url = "https://downloads.plex.tv/plex-media-server-new/${version}/debian/plexmediaserver_${version}_arm64.deb"; - sha256 = "sha256-gVM4KFRhnvEG1LAJUTdzSyJz3R3WZ8lvy7AbHLTd7XI="; + sha256 = "sha256-y1H1DmgMCYEzmhN01LgFHPzN/as2z457tZMdEJ0lgxk="; } else fetchurl { url = "https://downloads.plex.tv/plex-media-server-new/${version}/debian/plexmediaserver_${version}_amd64.deb"; - sha256 = "sha256-DSwcT67l5u8XNThbWIpdbJOb+vGUXF0u6SQSXyiOhSI="; + sha256 = "sha256-q95xyp+XJbDuT+SRP+EbcFDqqdcvRP4P1rnX8RO1egQ="; }; outputs = [ "out" "basedb" ]; diff --git a/pkgs/servers/pocketbase/default.nix b/pkgs/servers/pocketbase/default.nix index 462479745b876..fbb92bede63b9 100644 --- a/pkgs/servers/pocketbase/default.nix +++ b/pkgs/servers/pocketbase/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "pocketbase"; - version = "0.15.3"; + version = "0.16.4"; src = fetchFromGitHub { owner = "pocketbase"; repo = pname; rev = "v${version}"; - sha256 = "sha256-9LIOBfNOa+u7yLL7iWb/e7c8ZSiyjukqaY0ifVR2iSs="; + sha256 = "sha256-xthv6/mTtOsT8Q4xk+XXO5TDDCFYcMPFLOv+pkagpU4="; }; - vendorHash = "sha256-LFIJClPByaLXtsBOk7SjpJlIuQhWbVIs6H4PXhd7oyo="; + vendorHash = "sha256-4h3Q8w7emjfZkVr0xujoOUjipXnDQfHOn8Ii19cNllI="; # This is the released subpackage from upstream repo subPackages = [ "examples/base" ]; @@ -32,10 +32,15 @@ buildGoModule rec { mv $out/bin/base $out/bin/pocketbase ''; + patches = [ + # To provide a consistent update experience, we remove the built in update method + ./remove-update-method.patch + ]; + meta = with lib; { description = "Open Source realtime backend in 1 file"; homepage = "https://github.com/pocketbase/pocketbase"; license = licenses.mit; - maintainers = with maintainers; [ dit7ya ]; + maintainers = with maintainers; [ dit7ya thilobillerbeck ]; }; } diff --git a/pkgs/servers/pocketbase/remove-update-method.patch b/pkgs/servers/pocketbase/remove-update-method.patch new file mode 100644 index 0000000000000..a68ae58bd0ba2 --- /dev/null +++ b/pkgs/servers/pocketbase/remove-update-method.patch @@ -0,0 +1,22 @@ +diff --git a/examples/base/main.go b/examples/base/main.go +index 908d31d..04b8f1d 100644 +--- a/examples/base/main.go ++++ b/examples/base/main.go +@@ -10,7 +10,6 @@ import ( + "github.com/pocketbase/pocketbase" + "github.com/pocketbase/pocketbase/apis" + "github.com/pocketbase/pocketbase/core" +- "github.com/pocketbase/pocketbase/plugins/ghupdate" + "github.com/pocketbase/pocketbase/plugins/jsvm" + "github.com/pocketbase/pocketbase/plugins/migratecmd" + ) +@@ -80,9 +79,6 @@ func main() { + Dir: migrationsDir, + }) + +- // GitHub selfupdate +- ghupdate.MustRegister(app, app.RootCmd, nil) +- + app.OnAfterBootstrap().Add(func(e *core.BootstrapEvent) error { + app.Dao().ModelQueryTimeout = time.Duration(queryTimeout) * time.Second + return nil diff --git a/pkgs/servers/psitransfer/node-composition.nix b/pkgs/servers/psitransfer/node-composition.nix index a923391dfbeda..7b360d03dcf08 100644 --- a/pkgs/servers/psitransfer/node-composition.nix +++ b/pkgs/servers/psitransfer/node-composition.nix @@ -2,7 +2,7 @@ {pkgs ? import <nixpkgs> { inherit system; - }, system ? builtins.currentSystem, nodejs ? pkgs."nodejs-18_x"}: + }, system ? builtins.currentSystem, nodejs ? pkgs.nodejs_18}: let nodeEnv = import ../../development/node-packages/node-env.nix { diff --git a/pkgs/servers/radarr/default.nix b/pkgs/servers/radarr/default.nix index 4f4773603a2da..8ba80f9152917 100644 --- a/pkgs/servers/radarr/default.nix +++ b/pkgs/servers/radarr/default.nix @@ -9,14 +9,14 @@ let }."${stdenv.hostPlatform.system}" or (throw "Unsupported system: ${stdenv.hostPlatform.system}"); hash = { - x64-linux_hash = "sha256-Cx4cxpMoD1XY4GN3xBTCTxGwA3AbCQH3LLiqY1VyG68="; - arm64-linux_hash = "sha256-seJljPCfv/M6+0GpAeIyrxf9ueKy/83mMviP8Y1o390="; - x64-osx_hash = "sha256-J8w8ECHLWnlOcoB9X4qb8y19/W+nMQSxcPv/Ntq7FPY="; + x64-linux_hash = "sha256-BJKEl75VNr2dN/P1NeYuOYmrDJEIc8pGS2rszibVGbQ="; + arm64-linux_hash = "sha256-1qGx3rM8sjLhzCNnyUjTWs+EGLzmm12h/o08QmvXxts="; + x64-osx_hash = "sha256-+afi+BQGrJb+i91IDKZEqRS6xAMvU1C5XmZs6H5rgoI="; }."${arch}-${os}_hash"; in stdenv.mkDerivation rec { pname = "radarr"; - version = "4.4.4.7068"; + version = "4.5.2.7388"; src = fetchurl { url = "https://github.com/Radarr/Radarr/releases/download/v${version}/Radarr.master.${version}.${os}-core-${arch}.tar.gz"; diff --git a/pkgs/servers/reproxy/default.nix b/pkgs/servers/reproxy/default.nix index 4de4859c67c52..6192a492f2b8d 100644 --- a/pkgs/servers/reproxy/default.nix +++ b/pkgs/servers/reproxy/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "reproxy"; - version = "0.11.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "umputun"; repo = pname; rev = "v${version}"; - hash = "sha256-3kpGeG60WSpcIqVLw437gkDT8XLsDyhGL8/sEnhTgBw="; + hash = "sha256-ac4fOOMht2WGlrXLN95NEIA8ivqghhVuxHnBumvajx0="; }; postPatch = '' @@ -25,7 +25,7 @@ buildGoModule rec { --replace "TestFile_Events_BusyListener" "SkipFile_Events_BusyListener" ''; - vendorSha256 = null; + vendorHash = null; ldflags = [ "-s" "-w" "-X main.revision=${version}" diff --git a/pkgs/servers/rippled/default.nix b/pkgs/servers/rippled/default.nix index 9747e3475842b..18a1e91ea4d6b 100644 --- a/pkgs/servers/rippled/default.nix +++ b/pkgs/servers/rippled/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, fetchgit, fetchurl, git, cmake, pkg-config -, openssl, boost, grpc, protobuf, libnsl }: +, openssl, boost, grpc, protobuf, libnsl, rocksdb_6_23, snappy }: let sqlite3 = fetchurl rec { @@ -13,14 +13,6 @@ let enabledStatic = true; }; - beast = fetchgit { - url = "https://github.com/boostorg/beast.git"; - rev = "2f9a8440c2432d8a196571d6300404cb76314125"; - sha256 = "1n9ms5cn67b0p0mhldz5psgylds22sm5x22q7knrsf20856vlk5a"; - fetchSubmodules = false; - leaveDotGit = true; - }; - docca = fetchgit { url = "https://github.com/vinniefalco/docca.git"; rev = "335dbf9c3613e997ed56d540cc8c5ff2e28cab2d"; @@ -38,7 +30,7 @@ let postFetch = "cd $out && git tag ${rev}"; }; - rocksdb = fetchgit rec { + rocksdb = fetchgit { url = "https://github.com/facebook/rocksdb.git"; rev = "v6.7.3"; sha256 = "0dzn5jg3i2mnnjj24dn9lzi3aajj5ga2akjf64lybyj481lq445k"; @@ -73,24 +65,6 @@ let fetchSubmodules = false; }; - snappy = fetchgit rec { - url = "https://github.com/google/snappy.git"; - rev = "1.1.7"; - sha256 = "1f0i0sz5gc8aqd594zn3py6j4w86gi1xry6qaz2vzyl4w7cb4v35"; - leaveDotGit = true; - fetchSubmodules = false; - postFetch = "cd $out && git tag ${rev}"; - }; - - cares = fetchgit rec { - url = "https://github.com/c-ares/c-ares.git"; - rev = "cares-1_15_0"; - sha256 = "1fkzsyhfk5p5hr4dx4r36pg9xzs0md6cyj1q2dni3cjgqj3s518v"; - leaveDotGit = true; - fetchSubmodules = false; - postFetch = "cd $out && git tag ${rev}"; - }; - google-test = fetchgit { url = "https://github.com/google/googletest.git"; rev = "5ec7f0c4a113e2f18ac2c6cc7df51ad6afc24081"; @@ -116,31 +90,31 @@ let }; in stdenv.mkDerivation rec { pname = "rippled"; - version = "1.7.3"; + version = "1.9.4"; src = fetchgit { url = "https://github.com/ripple/rippled.git"; rev = version; - sha256 = "008qzb138r2pi0cqj4d6d5f0grlb2gm87m8j0dj8b0giya22xv6s"; leaveDotGit = true; fetchSubmodules = true; + hash = "sha256-VW/VmnhtF2xyHfEud3D6b3n8uTE0a/nDW1GISs5QfwM="; }; hardeningDisable = ["format"]; - cmakeFlags = ["-Dstatic=OFF" "-DBoost_NO_BOOST_CMAKE=ON"]; + cmakeFlags = ["-Dstatic=OFF" "-DBoost_NO_BOOST_CMAKE=ON" "-DSNAPPY_INCLUDE_DIR=${snappy}/include" ]; nativeBuildInputs = [ pkg-config cmake git ]; - buildInputs = [ openssl openssl.dev boostSharedStatic grpc protobuf libnsl ]; + buildInputs = [ openssl openssl.dev boostSharedStatic grpc protobuf libnsl rocksdb_6_23 snappy ]; preConfigure = '' export HOME=$PWD + git config --global protocol.file.allow always git config --global url."file://${rocksdb}".insteadOf "${rocksdb.url}" git config --global url."file://${docca}".insteadOf "${docca.url}" git config --global url."file://${lz4}".insteadOf "${lz4.url}" git config --global url."file://${libarchive}".insteadOf "${libarchive.url}" git config --global url."file://${soci}".insteadOf "${soci.url}" - git config --global url."file://${snappy}".insteadOf "${snappy.url}" git config --global url."file://${nudb}".insteadOf "${nudb.url}" git config --global url."file://${google-benchmark}".insteadOf "${google-benchmark.url}" git config --global url."file://${google-test}".insteadOf "${google-test.url}" @@ -150,6 +124,8 @@ in stdenv.mkDerivation rec { substituteInPlace Builds/CMake/deps/Sqlite.cmake --replace "https://www2.sqlite.org/2018/sqlite-amalgamation-3260000.zip" "" substituteInPlace Builds/CMake/deps/Sqlite.cmake --replace "http://www2.sqlite.org/2018/sqlite-amalgamation-3260000.zip" "" substituteInPlace Builds/CMake/deps/Sqlite.cmake --replace "URL ${sqlite3.url}" "URL ${sqlite3}" + + substituteInPlace Builds/CMake/deps/Rocksdb.cmake --replace "RocksDB 6.27" "RocksDB" ''; doCheck = true; @@ -162,7 +138,6 @@ in stdenv.mkDerivation rec { homepage = "https://github.com/ripple/rippled"; maintainers = with maintainers; [ offline RaghavSood ]; license = licenses.isc; - platforms = [ "x86_64-linux" ]; - knownVulnerabilities = [ "CVE-2022-29077" ]; + platforms = platforms.linux; }; } diff --git a/pkgs/servers/rustypaste/default.nix b/pkgs/servers/rustypaste/default.nix index 24fd1f4d2eed1..725cf317980e6 100644 --- a/pkgs/servers/rustypaste/default.nix +++ b/pkgs/servers/rustypaste/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "rustypaste"; - version = "0.9.1"; + version = "0.10.1"; - src = fetchFromGitHub{ + src = fetchFromGitHub { owner = "orhun"; repo = pname; rev = "v${version}"; - sha256 = "sha256-e7GZlR3P0Jk8JNIHvEi1EWlyw6o+MeYNG+2uDKgo9Z8="; + sha256 = "sha256-WLuMG9gC2kSdyrYa0CNnInjetXph0OL/Jmjskih4tuw="; }; - cargoHash = "sha256-QFRZyJFZNg/IqEBAuBPE+hzKV4A6TVVU5Knhsgz279E="; + cargoHash = "sha256-A651PTooQjITjxCLKPhnFSCxa27uesTOP8ZbAlRbOUk="; buildInputs = lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.CoreServices @@ -19,10 +19,10 @@ rustPlatform.buildRustPackage rec { # Some tests need network checkFlags = [ - "--skip paste::tests::test_paste_data" - "--skip server::tests::test_upload_file" - "--skip server::tests::test_upload_remote_file" - "--skip util::tests::test_get_expired_files" + "--skip=paste::tests::test_paste_data" + "--skip=server::tests::test_upload_file" + "--skip=server::tests::test_upload_remote_file" + "--skip=util::tests::test_get_expired_files" ]; meta = with lib; { @@ -30,6 +30,6 @@ rustPlatform.buildRustPackage rec { homepage = "https://github.com/orhun/rustypaste"; changelog = "https://github.com/orhun/rustypaste/blob/v${version}/CHANGELOG.md"; license = licenses.mit; - maintainers = with maintainers; [ seqizz ]; + maintainers = with maintainers; [ figsoda seqizz ]; }; } diff --git a/pkgs/servers/search/meilisearch/Cargo.lock b/pkgs/servers/search/meilisearch/Cargo.lock index f1ff389c018ea..ff4981d119ea8 100644 --- a/pkgs/servers/search/meilisearch/Cargo.lock +++ b/pkgs/servers/search/meilisearch/Cargo.lock @@ -36,16 +36,16 @@ dependencies = [ [[package]] name = "actix-http" -version = "3.3.0" +version = "3.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0070905b2c4a98d184c4e81025253cb192aa8a73827553f38e9410801ceb35bb" +checksum = "c2079246596c18b4a33e274ae10c0e50613f4d32a4198e09c7b93771013fed74" dependencies = [ "actix-codec", "actix-rt", "actix-service", "actix-tls", "actix-utils", - "ahash", + "ahash 0.8.3", "base64 0.21.0", "bitflags", "brotli", @@ -59,7 +59,7 @@ dependencies = [ "http", "httparse", "httpdate", - "itoa 1.0.5", + "itoa", "language-tags", "local-channel", "mime", @@ -81,7 +81,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "465a6172cf69b960917811022d8f29bc0b7fa1398bc4f78b3c466673db1213b6" dependencies = [ "quote", - "syn", + "syn 1.0.109", ] [[package]] @@ -99,9 +99,9 @@ dependencies = [ [[package]] name = "actix-rt" -version = "2.7.0" +version = "2.8.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7ea16c295198e958ef31930a6ef37d0fb64e9ca3b6116e6b93a8bdae96ee1000" +checksum = "15265b6b8e2347670eb363c47fc8c75208b4a4994b27192f345fcbe707804f3e" dependencies = [ "actix-macros", "futures-core", @@ -167,9 +167,9 @@ dependencies = [ [[package]] name = "actix-web" -version = "4.3.0" +version = "4.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "464e0fddc668ede5f26ec1f9557a8d44eda948732f40c6b0ad79126930eb775f" +checksum = "cd3cb42f9566ab176e1ef0b8b3a896529062b4efc6be0123046095914c4c1c96" dependencies = [ "actix-codec", "actix-http", @@ -181,7 +181,7 @@ dependencies = [ "actix-tls", "actix-utils", "actix-web-codegen", - "ahash", + "ahash 0.7.6", "bytes", "bytestring", "cfg-if", @@ -191,7 +191,7 @@ dependencies = [ "futures-core", "futures-util", "http", - "itoa 1.0.5", + "itoa", "language-tags", "log", "mime", @@ -209,14 +209,14 @@ dependencies = [ [[package]] name = "actix-web-codegen" -version = "4.1.0" +version = "4.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1fa9362663c8643d67b2d5eafba49e4cb2c8a053a29ed00a0bea121f17c76b13" +checksum = "2262160a7ae29e3415554a3f1fc04c764b1540c116aa524683208078b7a75bc9" dependencies = [ "actix-router", "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] @@ -269,6 +269,18 @@ dependencies = [ ] [[package]] +name = "ahash" +version = "0.8.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2c99f64d1e06488f620f932677e24bc6e2897582980441ae90a671415bd7ec2f" +dependencies = [ + "cfg-if", + "getrandom", + "once_cell", + "version_check", +] + +[[package]] name = "aho-corasick" version = "0.7.20" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -299,10 +311,50 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "4b46cbb362ab8752921c97e041f5e366ee6297bd428a31275b9fcf1e380f7299" [[package]] +name = "anstream" +version = "0.2.6" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "342258dd14006105c2b75ab1bd7543a03bdf0cfc94383303ac212a04939dff6f" +dependencies = [ + "anstyle", + "anstyle-parse", + "anstyle-wincon", + "concolor-override", + "concolor-query", + "is-terminal", + "utf8parse", +] + +[[package]] +name = "anstyle" +version = "0.3.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "23ea9e81bd02e310c216d080f6223c179012256e5151c41db88d12c88a1684d2" + +[[package]] +name = "anstyle-parse" +version = "0.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a7d1bb534e9efed14f3e5f44e7dd1a4f709384023a4165199a4241e18dff0116" +dependencies = [ + "utf8parse", +] + +[[package]] +name = "anstyle-wincon" +version = "0.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c3127af6145b149f3287bb9a0d10ad9c5692dba8c53ad48285e5bec4063834fa" +dependencies = [ + "anstyle", + "windows-sys 0.45.0", +] + +[[package]] name = "anyhow" -version = "1.0.68" +version = "1.0.70" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2cb2f989d18dd141ab8ae82f64d1a8cdd37e0840f73a406896cf5e99502fab61" +checksum = "7de8ce5e0f9f8d88245311066a578d72b7af3e7088f32783804676302df237e4" dependencies = [ "backtrace", ] @@ -319,34 +371,35 @@ dependencies = [ [[package]] name = "async-stream" -version = "0.3.3" +version = "0.3.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dad5c83079eae9969be7fadefe640a1c566901f05ff91ab221de4b6f68d9507e" +checksum = "cd56dd203fef61ac097dd65721a419ddccb106b2d2b70ba60a6b529f03961a51" dependencies = [ "async-stream-impl", "futures-core", + "pin-project-lite", ] [[package]] name = "async-stream-impl" -version = "0.3.3" +version = "0.3.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "10f203db73a71dfa2fb6dd22763990fa26f3d2625a6da2da900d23b87d26be27" +checksum = "16e62a023e7c117e27523144c5d2459f4397fcc3cab0085af8e2224f643a0193" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 2.0.14", ] [[package]] name = "async-trait" -version = "0.1.61" +version = "0.1.68" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "705339e0e4a9690e2908d2b3d049d85682cf19fbd5782494498fbf7003a6a282" +checksum = "b9ccdd8f2a161be9bd5c023df56f1b2a0bd1d83872ae53b71a84a12c9bf6e842" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 2.0.14", ] [[package]] @@ -410,7 +463,7 @@ checksum = "b645a089122eccb6111b4f81cbc1a49f5900ac4666bb93ac027feaecf15607bf" [[package]] name = "benchmarks" -version = "1.1.1" +version = "1.2.0" dependencies = [ "anyhow", "bytes", @@ -435,9 +488,9 @@ checksum = "199edb7b90631283b10c2422e6a0bc8b7d987bf732995ba1de53b576c97e51a8" [[package]] name = "bimap" -version = "0.6.2" +version = "0.6.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = 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source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c9b6515d269224923b26b5febea2ed42b2d5f2ce37284a4dd670fedd6cb8347a" +checksum = "c3d79fbe8970a77e3e34151cc13d3b3e248aa0faaecb9f6091fa07ebefe5ad60" dependencies = [ "encode_unicode", "lazy_static", "libc", - "windows-sys", + "windows-sys 0.42.0", ] [[package]] @@ -833,9 +893,9 @@ dependencies = [ [[package]] name = "core-foundation-sys" -version = "0.8.3" +version = "0.8.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5827cebf4670468b8772dd191856768aedcb1b0278a04f989f7766351917b9dc" +checksum = "e496a50fda8aacccc86d7529e2c1e0892dbd0f898a6b5645b5561b89c3210efa" [[package]] name = "cow-utils" @@ -845,9 +905,9 @@ checksum = "79bb3adfaf5f75d24b01aee375f7555907840fa2800e5ec8fa3b9e2031830173" [[package]] name = "cpufeatures" -version = "0.2.5" +version = "0.2.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = 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dependencies = [ "darling", "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] name = "derive_builder_macro" -version = "0.11.2" +version = "0.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8f0314b72bed045f3a68671b3c86328386762c93f82d98c65c3cb5e5f573dd68" +checksum = "ebcda35c7a396850a55ffeac740804b40ffec779b98fffbb1738f4033f0ee79e" dependencies = [ "derive_builder_core", - "syn", + "syn 1.0.109", ] [[package]] @@ -1078,7 +1137,7 @@ dependencies = [ "proc-macro2", "quote", "rustc_version", - "syn", + "syn 1.0.109", ] [[package]] @@ -1107,7 +1166,7 @@ dependencies = [ "convert_case 0.5.0", "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] @@ -1150,7 +1209,7 @@ dependencies = [ [[package]] name = "dump" -version = "1.1.1" +version = "1.2.0" dependencies = [ "anyhow", "big_s", @@ -1170,14 +1229,14 @@ dependencies = [ "tempfile", "thiserror", "time", - "uuid 1.2.2", + "uuid 1.3.1", ] [[package]] name = "either" -version = 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"4bcfec3a70f97c962c307b2d2c56e358cf1d00b558d74262b5f929ee8cc7e73a" +dependencies = [ + "errno-dragonfly", + "libc", + "windows-sys 0.48.0", +] + +[[package]] name = "errno-dragonfly" version = "0.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1339,9 +1396,9 @@ dependencies = [ [[package]] name = "fastrand" -version = "1.8.0" +version = "1.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a7a407cfaa3385c4ae6b23e84623d48c2798d06e3e6a1878f7f59f17b3f86499" +checksum = "e51093e27b0797c359783294ca4f0a911c270184cb10f85783b118614a1501be" dependencies = [ "instant", ] @@ -1365,18 +1422,18 @@ dependencies = [ "darling", "proc-macro2", "quote", - "syn", + "syn 1.0.109", "uuid 0.8.2", ] [[package]] name = "file-store" -version = "1.1.1" +version = "1.2.0" dependencies = [ "faux", "tempfile", "thiserror", - "uuid 1.2.2", + "uuid 1.3.1", ] [[package]] @@ -1387,13 +1444,13 @@ checksum = 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[[package]] name = "futures-executor" -version = "0.3.25" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7acc85df6714c176ab5edf386123fafe217be88c0840ec11f199441134a074e2" +checksum = "ccecee823288125bd88b4d7f565c9e58e41858e47ab72e8ea2d64e93624386e0" dependencies = [ "futures-core", "futures-task", @@ -1484,38 +1547,38 @@ dependencies = [ [[package]] name = "futures-io" -version = "0.3.25" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "00f5fb52a06bdcadeb54e8d3671f8888a39697dcb0b81b23b55174030427f4eb" +checksum = "4fff74096e71ed47f8e023204cfd0aa1289cd54ae5430a9523be060cdb849964" [[package]] name = "futures-macro" -version = "0.3.25" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bdfb8ce053d86b91919aad980c220b1fb8401a9394410e1c289ed7e66b61835d" +checksum = "89ca545a94061b6365f2c7355b4b32bd20df3ff95f02da9329b34ccc3bd6ee72" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 2.0.14", ] [[package]] name = "futures-sink" -version = "0.3.25" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "39c15cf1a4aa79df40f1bb462fb39676d0ad9e366c2a33b590d7c66f4f81fcf9" +checksum = "f43be4fe21a13b9781a69afa4985b0f6ee0e1afab2c6f454a8cf30e2b2237b6e" [[package]] name = "futures-task" -version = "0.3.25" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2ffb393ac5d9a6eaa9d3fdf37ae2776656b706e200c8e16b1bdb227f5198e6ea" +checksum = "76d3d132be6c0e6aa1534069c705a74a5997a356c0dc2f86a47765e5617c5b65" [[package]] name = "futures-util" -version = "0.3.25" +version = "0.3.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "197676987abd2f9cadff84926f410af1c183608d36641465df73ae8211dc65d6" +checksum = "26b01e40b772d54cf6c6d721c1d1abd0647a0106a12ecaa1c186273392a69533" dependencies = [ "futures-channel", "futures-core", @@ -1535,7 +1598,7 @@ version = "0.12.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "ee76e8096c3fcd82ab23177edddcc9b81b72c123caab54bb1e2dc19fd09d2dec" dependencies = [ - "ahash", + "ahash 0.7.6", "bit-vec", "cc", "cfg-if", @@ -1570,7 +1633,7 @@ checksum = "30ce01e8bbb3e7e0758dcf907fe799f5998a54368963f766ae94b84624ba60c8" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] @@ -1584,9 +1647,9 @@ dependencies = [ [[package]] name = "generic-array" -version = "0.14.6" +version = "0.14.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bff49e947297f3312447abdca79f45f4738097cc82b06e72054d2223f601f1b9" +checksum = "85649ca51fd72272d7821adaf274ad91c288277713d9c18820d8499a7ff69e9a" dependencies = [ "typenum", "version_check", @@ -1627,7 +1690,7 @@ dependencies = [ "proc-macro-error", "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] @@ -1638,9 +1701,9 @@ checksum = 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-1718,20 +1781,20 @@ dependencies = [ "atomic-polyfill", "hash32", "rustc_version", - "spin 0.9.4", + "spin 0.9.8", "stable_deref_trait", ] [[package]] name = "heck" -version = "0.4.0" +version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2540771e65fc8cb83cd6e8a237f70c319bd5c29f78ed1084ba5d50eeac86f7f9" +checksum = "95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8" [[package]] name = "heed" version = "0.12.5" -source = "git+https://github.com/meilisearch/heed?tag=v0.12.5#4158a6c484752afaaf9e2530a6ee0e7ab0f24ee8" +source = "git+https://github.com/meilisearch/heed?tag=v0.12.6#8c5b94225fc949c02bb7b900cc50ffaf6b584b1e" dependencies = [ "byteorder", "heed-traits", @@ -1748,12 +1811,12 @@ dependencies = [ [[package]] name = "heed-traits" version = "0.7.0" -source = "git+https://github.com/meilisearch/heed?tag=v0.12.5#4158a6c484752afaaf9e2530a6ee0e7ab0f24ee8" +source = "git+https://github.com/meilisearch/heed?tag=v0.12.6#8c5b94225fc949c02bb7b900cc50ffaf6b584b1e" [[package]] name = "heed-types" version = "0.7.2" -source = "git+https://github.com/meilisearch/heed?tag=v0.12.5#4158a6c484752afaaf9e2530a6ee0e7ab0f24ee8" +source = "git+https://github.com/meilisearch/heed?tag=v0.12.6#8c5b94225fc949c02bb7b900cc50ffaf6b584b1e" dependencies = [ "bincode", "heed-traits", @@ -1781,6 +1844,12 @@ dependencies = [ ] [[package]] +name = "hermit-abi" +version = "0.3.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "fed44880c466736ef9a5c5b5facefb5ed0785676d0c02d612db14e54f0d84286" + +[[package]] name = "hex" version = "0.4.3" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1797,13 +1866,13 @@ dependencies = [ [[package]] name = "http" -version = "0.2.8" +version = "0.2.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "75f43d41e26995c17e71ee126451dd3941010b0514a81a9d11f3b341debc2399" +checksum = "bd6effc99afb63425aff9b05836f029929e345a6148a14b7ecd5ab67af944482" dependencies = [ "bytes", "fnv", - "itoa 1.0.5", + "itoa", ] [[package]] @@ -1837,9 +1906,9 @@ checksum = "9a3a5bfb195931eeb336b2a7b4d761daec841b97f947d34394601737a7bba5e4" [[package]] name = "hyper" -version = "0.14.23" +version = "0.14.25" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "034711faac9d2166cb1baf1a2fb0b60b1f277f8492fd72176c17f3515e1abd3c" +checksum = "cc5e554ff619822309ffd57d8734d77cd5ce6238bc956f037ea06c58238c9899" dependencies = [ "bytes", "futures-channel", @@ -1850,7 +1919,7 @@ dependencies = [ "http-body", "httparse", "httpdate", - "itoa 1.0.5", + "itoa", "pin-project-lite", "socket2", "tokio", @@ -1890,7 +1959,7 @@ dependencies = [ [[package]] name = "index-scheduler" -version = "1.1.1" +version = "1.2.0" dependencies = [ "anyhow", "big_s", @@ -1915,14 +1984,14 @@ dependencies = [ "tempfile", "thiserror", "time", - "uuid 1.2.2", + "uuid 1.3.1", ] [[package]] name = "indexmap" -version = "1.9.2" +version = "1.9.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1885e79c1fc4b10f0e172c475f458b7f7b93061064d98c3293e98c5ba0c8b399" +checksum = "bd070e393353796e801d209ad339e89596eb4c8d430d18ede6a1cced8fafbd99" dependencies = [ "autocfg", "hashbrown", @@ -1931,9 +2000,9 @@ dependencies = [ [[package]] name = "insta" -version = "1.26.0" +version = "1.29.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f6f0f08b46e4379744de2ab67aa8f7de3ffd1da3e275adc41fcc82053ede46ff" +checksum = "9a28d25139df397cbca21408bb742cf6837e04cdbebf1b07b760caf971d6a972" dependencies = [ "console", "lazy_static", @@ -1956,19 +2025,20 @@ dependencies = [ [[package]] name = "io-lifetimes" -version = "1.0.3" +version = "1.0.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "46112a93252b123d31a119a8d1a1ac19deac4fac6e0e8b0df58f0d4e5870e63c" +checksum = "9c66c74d2ae7e79a5a8f7ac924adbe38ee42a859c6539ad869eb51f0b52dc220" dependencies = [ + "hermit-abi 0.3.1", "libc", - "windows-sys", + "windows-sys 0.48.0", ] [[package]] name = "ipnet" -version = "2.7.1" +version = "2.7.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "30e22bd8629359895450b59ea7a776c850561b96a3b1d31321c1949d9e6c9146" +checksum = "12b6ee2129af8d4fb011108c73d99a1b83a85977f23b82460c0ae2e25bb4b57f" [[package]] name = "irg-kvariants" @@ -1983,14 +2053,14 @@ dependencies = [ [[package]] name = "is-terminal" -version = "0.4.2" +version = "0.4.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "28dfb6c8100ccc63462345b67d1bbc3679177c75ee4bf59bf29c8b1d110b8189" +checksum = "adcf93614601c8129ddf72e2d5633df827ba6551541c6d8c59520a371475be1f" dependencies = [ - "hermit-abi 0.2.6", + "hermit-abi 0.3.1", "io-lifetimes", - "rustix", - "windows-sys", + "rustix 0.37.11", + "windows-sys 0.48.0", ] [[package]] @@ -2004,15 +2074,9 @@ dependencies = [ [[package]] name = "itoa" -version = "0.4.8" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b71991ff56294aa922b450139ee08b3bfc70982c6b2c7562771375cf73542dd4" - -[[package]] -name = "itoa" -version = "1.0.5" +version = "1.0.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fad582f4b9e86b6caa621cabeb0963332d92eea04729ab12892c2533951e6440" +checksum = "453ad9f582a441959e5f0d088b02ce04cfe8d51a8eaf077f12ac6d3e94164ca6" [[package]] name = "jieba-rs" @@ -2031,9 +2095,9 @@ dependencies = [ [[package]] name = "jobserver" -version = "0.1.25" +version = "0.1.26" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "068b1ee6743e4d11fb9c6a1e6064b3693a1b600e7f5f5988047d98b3dc9fb90b" +checksum = "936cfd212a0155903bcbc060e316fb6cc7cbf2e1907329391ebadc1fe0ce77c2" dependencies = [ "libc", ] @@ -2049,7 +2113,7 @@ dependencies = [ [[package]] name = "json-depth-checker" -version = "1.1.1" +version = "1.2.0" dependencies = [ "criterion", "serde_json", @@ -2057,11 +2121,11 @@ dependencies = [ [[package]] name = "jsonwebtoken" -version = "8.2.0" +version = "8.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "09f4f04699947111ec1733e71778d763555737579e44b85844cae8e1940a1828" +checksum = "6971da4d9c3aa03c3d8f3ff0f4155b534aad021292003895a469716b2a230378" dependencies = [ - "base64 0.13.1", + "base64 0.21.0", "pem", "ring", "serde", @@ -2101,9 +2165,9 @@ dependencies = [ [[package]] name = "libc" -version = "0.2.139" +version = "0.2.141" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "201de327520df007757c1f0adce6e827fe8562fbc28bfd9c15571c66ca1f5f79" +checksum = "3304a64d199bb964be99741b7a14d26972741915b3649639149b2479bb46f4b5" [[package]] name = "libgit2-sys" @@ -2125,9 +2189,9 @@ checksum = "348108ab3fba42ec82ff6e9564fc4ca0247bdccdc68dd8af9764bbc79c3c8ffb" [[package]] name = "libmimalloc-sys" -version = "0.1.30" +version = 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+version = "0.23.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "60c3b379251edadbac7a5fdb31e482274e11dae6ab6cc789d0d86cf34369cf49" +checksum = "10fbafd37adab44ccc2668a40fba2dbc4e665cb3c36018c15dfe2e2b830e28ce" dependencies = [ "anyhow", "bincode", "byteorder", "csv", "encoding", - "env_logger 0.10.0", + "env_logger", "glob", "lindera-core", "lindera-decompress", @@ -2194,9 +2257,9 @@ dependencies = [ [[package]] name = "lindera-compress" -version = "0.21.0" +version = "0.23.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a8d0ea3de5625e2381cac94e518d3b56103fde56bc0dce840fe875c1e871b125" +checksum = "ed9196bf5995503f6878a090dfee6114ba86430c72f67ef3624246b564869937" dependencies = [ "anyhow", "flate2", @@ -2205,9 +2268,9 @@ dependencies = [ [[package]] name = "lindera-core" -version = "0.21.0" +version = "0.23.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2281747b98fdd46bcc54ce7fdb6870dad9f67ddb3dc086c47b6704f3e1178cd5" +checksum = "e5f0baa9932f682e9c5b388897330f155d3c40de80016e60125897fde5e0e246" dependencies = [ "anyhow", "bincode", @@ -2222,9 +2285,9 @@ dependencies = [ [[package]] name = "lindera-decompress" -version = "0.21.0" +version = "0.23.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "52101bd454754c506305ab897af5ac2ae41fe91e3272c1ff5c6a02a089dfaefd" +checksum = "a6e63fa6ef0bc3ce2c26d372aa6185b7a316194494a84f81678f5da2893bf4a2" dependencies = [ "anyhow", "flate2", @@ -2233,21 +2296,46 @@ dependencies = [ [[package]] name = "lindera-dictionary" -version = "0.21.0" +version = "0.23.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "af1c6668848f1d30d216c99093a3ed3fe125c105fa12a4aeed5a1861dc01dd52" +checksum = "fd765c36166016de87a1f447ea971573e4c63e334836c46ad0020f0408c88bfc" dependencies = [ "anyhow", "bincode", "byteorder", "lindera-core", + "lindera-ipadic", + "lindera-ko-dic", + "serde", +] + +[[package]] +name = "lindera-filter" +version = "0.23.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a5345e37fb9521ab3cee19283bed135d46b3521dc1fd13a49fa0992379056203" +dependencies = [ + "anyhow", + "bincode", + "byteorder", + "kanaria", + "lindera-core", + "lindera-dictionary", + "once_cell", + "regex", + "serde", + "serde_json", + "unicode-blocks", + "unicode-normalization", + "unicode-segmentation", + "yada", ] [[package]] name = "lindera-ipadic" -version = "0.21.0" +version = "0.23.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "693098007200fa43fd5cdc9ca8740f371327369672ce812cd87a1f6344971e31" +checksum = "60eeb356295f784e7db4cfd2c6772f2bd059e565a7744e246642a07bc333a88a" dependencies = [ "bincode", "byteorder", @@ -2262,9 +2350,9 @@ dependencies = [ [[package]] name = "lindera-ipadic-builder" -version = "0.21.0" +version = "0.23.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7b6b7240d097a8fc37ee8f90ebff02c4db0ba5325ecb0dacb6da3724596798c9" +checksum = "0a16a2a88db9d956f5086bc976deb9951ca2dbbfef41a002df0a7bfb2c845aab" dependencies = [ "anyhow", "bincode", @@ -2272,7 +2360,7 @@ dependencies = [ "csv", "encoding_rs", "encoding_rs_io", - "env_logger 0.10.0", + "env_logger", "glob", "lindera-compress", "lindera-core", @@ -2284,9 +2372,9 @@ dependencies = [ [[package]] name = "lindera-ko-dic" -version = "0.21.0" +version = "0.23.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "abd3c5a4addeb61ca66788a3dd1fd51093e6cd8fea1d997042ada5aa60e8cc5e" +checksum = "abb479b170a841b8cfbe602d772e30849ffe0562b219190a378368968b8c8f66" dependencies = [ "bincode", "byteorder", @@ -2301,16 +2389,16 @@ dependencies = [ [[package]] name = "lindera-ko-dic-builder" -version = "0.21.0" +version = "0.23.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "512bb1393a9281e0b13704319d1343b7931416865852d9d7b7c0178431518326" +checksum = "9b9b58213552560717c48e7833444a20d2d7fe26a6e565f7ce0cbbf85784c7cf" dependencies = [ "anyhow", "bincode", "byteorder", "csv", "encoding", - "env_logger 0.10.0", + "env_logger", "glob", "lindera-compress", "lindera-core", @@ -2321,16 +2409,16 @@ dependencies = [ [[package]] name = "lindera-unidic-builder" -version = "0.21.0" +version = "0.23.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7f575a27f8ba67c15fe16ebf7d277a0ac04e8c8a0f72670ebc2443da9d41c450" +checksum = "6858147cdaf4a7b564c08a247449d3aca38e9b4812499651af08afbf85324596" dependencies = [ "anyhow", "bincode", "byteorder", "csv", "encoding", - "env_logger 0.10.0", + "env_logger", "glob", "lindera-core", "lindera-decompress", @@ -2351,6 +2439,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f051f77a7c8e6957c0696eac88f26b0117e54f52d3fc682ab19397a8812846a4" [[package]] +name = "linux-raw-sys" +version = "0.3.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "d59d8c75012853d2e872fb56bc8a2e53718e2cafe1a4c823143141c6d90c322f" + +[[package]] name = "lmdb-rkv-sys" version = "0.15.1" source = "git+https://github.com/meilisearch/lmdb-rs#501aa34a1ab7f092e3ff54a6c22ff6c55931a2d8" @@ -2416,7 +2510,7 @@ dependencies = [ "log", "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] @@ -2428,7 +2522,7 @@ dependencies = [ "once_cell", "proc-macro2", "quote", - "syn", + "syn 1.0.109", ] [[package]] @@ -2445,7 +2539,7 @@ checksum = "490cc448043f947bae3cbee9c203358d62dbee0db12107a74be5c30ccfd09771" [[package]] name = "meili-snap" -version = "1.1.1" +version = "1.2.0" dependencies = [ "insta", "md5", @@ -2454,7 +2548,7 @@ dependencies = [ [[package]] name = "meilisearch" -version = "1.1.1" +version = "1.2.0" dependencies = [ "actix-cors", "actix-http", @@ -2468,16 +2562,16 @@ dependencies = [ "async-trait", "atty", "brotli", - "bstr 1.1.0", + "bstr", "byte-unit", "bytes", "cargo_toml", - "clap 4.0.32", + "clap 4.2.1", "crossbeam-channel", "deserr", "dump", "either", - "env_logger 0.9.3", + "env_logger", "file-store", "flate2", "fst", @@ -2533,7 +2627,7 @@ dependencies = [ "tokio-stream", "toml", "urlencoding", - "uuid 1.2.2", + "uuid 1.3.1", "vergen", "walkdir", "yaup", @@ -2542,9 +2636,9 @@ dependencies = [ [[package]] name = "meilisearch-auth" -version = "1.1.1" +version = "1.2.0" dependencies = [ - "base64 0.13.1", + "base64 0.21.0", "enum-iterator", "hmac", "maplit", @@ -2556,12 +2650,12 @@ dependencies = [ "sha2", "thiserror", "time", - "uuid 1.2.2", + "uuid 1.3.1", ] [[package]] name = "meilisearch-types" -version = "1.1.1" +version = "1.2.0" dependencies = [ "actix-web", "anyhow", @@ -2586,7 +2680,7 @@ dependencies = [ "thiserror", "time", "tokio", - "uuid 1.2.2", + "uuid 1.3.1", ] [[package]] @@ -2597,30 +2691,30 @@ checksum = "2dffe52ecf27772e601905b7522cb4ef790d2cc203488bbd0e2fe85fcb74566d" [[package]] name = "memmap2" -version = "0.5.8" +version = "0.5.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4b182332558b18d807c4ce1ca8ca983b34c3ee32765e47b3f0f69b90355cc1dc" +checksum = "83faa42c0a078c393f6b29d5db232d8be22776a891f8f56e5284faee4a20b327" dependencies = [ "libc", ] [[package]] name = "memoffset" -version = "0.7.1" +version = "0.8.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5de893c32cde5f383baa4c04c5d6dbdd735cfd4a794b0debdb2bb1b421da5ff4" +checksum = "d61c719bcfbcf5d62b3a09efa6088de8c54bc0bfcd3ea7ae39fcc186108b8de1" dependencies = [ "autocfg", ] [[package]] name = "milli" -version = "1.1.1" +version = "1.2.0" dependencies = [ "big_s", "bimap", "bincode", - "bstr 1.1.0", + "bstr", "byteorder", "charabia", "concat-arrays", @@ -2645,6 +2739,7 @@ dependencies = [ "maplit", "md5", "memmap2", + "mimalloc", "obkv", "once_cell", "ordered-float", @@ -2661,23 +2756,23 @@ dependencies = [ "tempfile", "thiserror", "time", - "uuid 1.2.2", + "uuid 1.3.1", ] [[package]] name = "mimalloc" -version = "0.1.34" +version = "0.1.36" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9dcb174b18635f7561a0c6c9fc2ce57218ac7523cf72c50af80e2d79ab8f3ba1" +checksum = "3d88dad3f985ec267a3fcb7a1726f5cb1a7e8cad8b646e70a84f967210df23da" dependencies = [ "libmimalloc-sys", ] [[package]] name = "mime" -version = "0.3.16" +version = "0.3.17" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2a60c7ce501c71e03a9c9c0d35b861413ae925bd979cc7a4e30d060069aaac8d" +checksum = "6877bb514081ee2a7ff5ef9de3281f14a4dd4bceac4c09388074a6b5df8a139a" [[package]] name = "mime_guess" @@ -2706,14 +2801,14 @@ dependencies = [ [[package]] name = "mio" -version = "0.8.5" +version = "0.8.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e5d732bc30207a6423068df043e3d02e0735b155ad7ce1a6f76fe2baa5b158de" +checksum = "5b9d9a46eff5b4ff64b45a9e316a6d1e0bc719ef429cbec4dc630684212bfdf9" dependencies = [ "libc", "log", "wasi", - "windows-sys", + "windows-sys 0.45.0", ] [[package]] @@ -2723,9 +2818,9 @@ source = "git+https://github.com/meilisearch/nelson.git?rev=675f13885548fb415ead [[package]] name = "nom" -version = "7.1.2" +version = "7.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e5507769c4919c998e69e49c839d9dc6e693ede4cc4290d6ad8b41d4f09c548c" +checksum = "d273983c5a657a70a3e8f2a01329822f3b8c8172b73826411a55751e404a0a4a" dependencies = [ "memchr", "minimal-lexical", @@ -2733,9 +2828,9 @@ dependencies = [ [[package]] name = "nom_locate" -version = "4.0.0" +version = "4.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "37794436ca3029a3089e0b95d42da1f0b565ad271e4d3bb4bad0c7bb70b10605" +checksum = "b1e299bf5ea7b212e811e71174c5d1a5d065c4c0ad0c8691ecb1f97e3e66025e" dependencies = [ "bytecount", "memchr", @@ -2828,9 +2923,9 @@ checksum = "f69e48cd7c8e5bb52a1da1287fdbfd877c32673176583ce664cd63b201aba385" [[package]] name = "once_cell" -version = "1.17.0" +version = "1.17.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6f61fba1741ea2b3d6a1e3178721804bb716a68a6aeba1149b5d52e3d464ea66" +checksum = "b7e5500299e16ebb147ae15a00a942af264cf3688f47923b8fc2cd5858f23ad3" [[package]] name = "oorandom" @@ -2846,18 +2941,18 @@ checksum = "624a8340c38c1b80fd549087862da4ba43e08858af025b236e509b6649fc13d5" [[package]] name = "ordered-float" -version = "3.4.0" +version = "3.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d84eb1409416d254e4a9c8fa56cc24701755025b458f0fcd8e59e1f5f40c23bf" +checksum = "13a384337e997e6860ffbaa83708b2ef329fd8c54cb67a5f64d421e0f943254f" dependencies = [ "num-traits", ] [[package]] name = "os_str_bytes" -version = "6.4.1" +version = "6.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9b7820b9daea5457c9f21c69448905d723fbd21136ccf521748f23fd49e723ee" +checksum = "ceedf44fb00f2d1984b0bc98102627ce622e083e49a5bacdb3e514fa4238e267" [[package]] name = "overload" @@ -2897,15 +2992,15 @@ dependencies = [ [[package]] name = "parking_lot_core" -version = "0.9.5" +version = "0.9.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7ff9f3fef3968a3ec5945535ed654cb38ff72d7495a25619e2247fb15a2ed9ba" +checksum = "9069cbb9f99e3a5083476ccb29ceb1de18b9118cafa53e90c9551235de2b9521" dependencies = [ "cfg-if", "libc", - "redox_syscall", + "redox_syscall 0.2.16", "smallvec", - "windows-sys", + "windows-sys 0.45.0", ] [[package]] @@ -2921,9 +3016,9 @@ dependencies = [ [[package]] name = "paste" -version = "1.0.11" +version = "1.0.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d01a5bd0424d00070b0098dd17ebca6f961a959dead1dbcbbbc1d1cd8d3deeba" +checksum = "9f746c4065a8fa3fe23974dd82f15431cc8d40779821001404d10d2e79ca7d79" [[package]] name = "path-matchers" @@ -2969,7 +3064,7 @@ checksum = "478c572c3d73181ff3c2539045f6eb99e5491218eae919370993b890cdbdd98e" [[package]] name = "permissive-json-pointer" -version = "1.1.1" +version = "1.2.0" dependencies = [ "big_s", "serde_json", @@ -2977,9 +3072,9 @@ dependencies = [ [[package]] name = "pest" -version = "2.5.3" +version = "2.5.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4257b4a04d91f7e9e6290be5d3da4804dd5784fafde3a497d73eb2b4a158c30a" +checksum = "7b1403e8401ad5dedea73c626b99758535b342502f8d1e361f4a2dd952749122" dependencies = [ "thiserror", "ucd-trie", @@ -2987,9 +3082,9 @@ dependencies = [ [[package]] name = "pest_derive" -version = "2.5.3" +version = "2.5.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "241cda393b0cdd65e62e07e12454f1f25d57017dcc514b1514cd3c4645e3a0a6" +checksum = "be99c4c1d2fc2769b1d00239431d711d08f6efedcecb8b6e30707160aee99c15" dependencies = [ "pest", "pest_generator", @@ -2997,22 +3092,22 @@ dependencies = [ [[package]] name = "pest_generator" -version = "2.5.3" +version = "2.5.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "46b53634d8c8196302953c74d5352f33d0c512a9499bd2ce468fc9f4128fa27c" +checksum = "e56094789873daa36164de2e822b3888c6ae4b4f9da555a1103587658c805b1e" dependencies = [ "pest", "pest_meta", "proc-macro2", "quote", - "syn", + "syn 2.0.14", ] [[package]] name = "pest_meta" -version = "2.5.3" +version = "2.5.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0ef4f1332a8d4678b41966bb4cc1d0676880e84183a1ecc3f4b69f03e99c7a51" +checksum = "6733073c7cff3d8459fda0e42f13a047870242aed8b509fe98000928975f359e" dependencies = [ "once_cell", "pest", @@ -3133,7 +3228,7 @@ dependencies = [ "proc-macro-error-attr", "proc-macro2", "quote", - "syn", + "syn 1.0.109", "version_check", ] @@ -3150,9 +3245,9 @@ dependencies = [ [[package]] name = "proc-macro2" -version = "1.0.49" +version = "1.0.56" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "57a8eca9f9c4ffde41714334dee777596264c7825420f521abc92b5b5deb63a5" +checksum = "2b63bdb0cd06f1f4dedf69b254734f9b45af66e4a031e42a7480257d9898b435" dependencies = [ "unicode-ident", ] @@ -3167,7 +3262,7 @@ dependencies = [ "byteorder", "hex", "lazy_static", - "rustix", + "rustix 0.36.11", ] [[package]] @@ -3195,9 +3290,9 @@ checksum = "106dd99e98437432fed6519dedecfade6a06a73bb7b2a1e019fdd2bee5778d94" [[package]] name = "quote" -version = "1.0.23" +version = "1.0.26" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8856d8364d252a14d474036ea1358d63c9e6965c8e5c1885c18f73d70bff9c7b" +checksum = "4424af4bf778aae2051a77b60283332f386554255d722233d09fbfc7e30da2fc" dependencies = [ "proc-macro2", ] @@ -3234,9 +3329,9 @@ dependencies = [ [[package]] name = "rayon" -version = "1.6.1" +version = "1.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6db3a213adf02b3bcfd2d3846bb41cb22857d131789e01df434fb7e7bc0759b7" +checksum = "1d2df5196e37bcc87abebc0053e20787d73847bb33134a69841207dd0a47f03b" dependencies = [ "either", "rayon-core", @@ -3244,9 +3339,9 @@ dependencies = [ [[package]] name = "rayon-core" -version = "1.10.1" +version = "1.11.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cac410af5d00ab6884528b4ab69d1e8e146e8d471201800fa1b4524126de6ad3" +checksum = "4b8f95bd6966f5c87776639160a66bd8ab9895d9d4ab01ddba9fc60661aebe8d" dependencies = [ "crossbeam-channel", "crossbeam-deque", @@ -3264,21 +3359,30 @@ dependencies = [ ] [[package]] +name = "redox_syscall" +version = "0.3.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "567664f262709473930a4bf9e51bf2ebf3348f2e748ccc50dea20646858f8f29" +dependencies = [ + "bitflags", +] + +[[package]] name = "redox_users" version = "0.4.3" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = 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+ "parking_lot", ] [[package]] name = "tempfile" -version = "3.3.0" +version = "3.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5cdb1ef4eaeeaddc8fbd371e5017057064af0911902ef36b39801f67cc6d79e4" +checksum = "b9fbec84f381d5795b08656e4912bec604d162bff9291d6189a78f4c8ab87998" dependencies = [ "cfg-if", "fastrand", - "libc", - "redox_syscall", - "remove_dir_all", - "winapi", + "redox_syscall 0.3.5", + "rustix 0.37.11", + "windows-sys 0.45.0", ] [[package]] name = "termcolor" -version = "1.1.3" +version = "1.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bab24d30b911b2376f3a13cc2cd443142f0c81dda04c118693e35b3835757755" +checksum = "be55cf8942feac5c765c2c993422806843c9a9a45d4d5c407ad6dd2ea95eb9b6" dependencies = [ "winapi-util", ] @@ -3816,31 +3944,31 @@ checksum = "222a222a5bfe1bba4a77b45ec488a741b3cb8872e5e499451fd7d0129c9c7c3d" [[package]] name = "thiserror" -version = "1.0.38" +version = "1.0.40" source = 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"711b9620af191e0cdc7468a8d14e709c3dcdb115b36f838e601583af800a370a" + +[[package]] name = "uuid" version = "0.8.2" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4101,9 +4259,9 @@ dependencies = [ [[package]] name = "uuid" -version = "1.2.2" +version = "1.3.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "422ee0de9031b5b948b97a8fc04e3aa35230001a722ddd27943e0be31564ce4c" +checksum = "5b55a3fef2a1e3b3a00ce878640918820d3c51081576ac657d23af9fc7928fdb" dependencies = [ "getrandom", "serde", @@ -4117,9 +4275,9 @@ checksum = "accd4ea62f7bb7a82fe23066fb0957d48ef677f6eeb8215f372f52e48bb32426" [[package]] name = "vergen" -version = "7.5.0" +version = "7.5.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "571b69f690c855821462709b6f41d42ceccc316fbd17b60bd06d06928cfe6a99" +checksum = "f21b881cd6636ece9735721cf03c1fe1e774fe258683d084bb2812ab67435749" dependencies = [ "anyhow", "cfg-if", @@ -4139,20 +4297,19 @@ checksum = "49874b5167b65d7193b8aba1567f5c7d93d001cafc34600cee003eda787e483f" [[package]] name = "walkdir" -version = "2.3.2" +version = "2.3.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "808cf2735cd4b6866113f648b791c6adc5714537bc222d9347bb203386ffda56" +checksum = "36df944cda56c7d8d8b7496af378e6b16de9284591917d307c9b4d313c44e698" dependencies = [ "same-file", - "winapi", "winapi-util", ] [[package]] name = "wana_kana" -version = "2.1.2" +version = "3.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5770f395a1c9d6d64bee602f0a36763d7861ef5715f9d4f707cb0086f82dba54" +checksum = "477976a5c56fb7b014795df5a2ce08d2de8bcd4d5980844c5bd3978a7fd1c30b" dependencies = [ "fnv", "itertools", @@ -4196,7 +4353,7 @@ dependencies = [ "once_cell", "proc-macro2", "quote", - "syn", + "syn 1.0.109", "wasm-bindgen-shared", ] @@ -4230,7 +4387,7 @@ checksum = "07bc0c051dc5f23e307b13285f9d75df86bfdf816c5721e573dec1f9b8aa193c" dependencies = [ "proc-macro2", "quote", - "syn", + "syn 1.0.109", "wasm-bindgen-backend", "wasm-bindgen-shared", ] @@ -4317,56 +4474,155 @@ version = "0.42.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5a3e1820f08b8513f676f7ab6c1f99ff312fb97b553d30ff4dd86f9f15728aa7" dependencies = [ - "windows_aarch64_gnullvm", - "windows_aarch64_msvc", - "windows_i686_gnu", - "windows_i686_msvc", - "windows_x86_64_gnu", - "windows_x86_64_gnullvm", - "windows_x86_64_msvc", + "windows_aarch64_gnullvm 0.42.2", + "windows_aarch64_msvc 0.42.2", + "windows_i686_gnu 0.42.2", + "windows_i686_msvc 0.42.2", + "windows_x86_64_gnu 0.42.2", + "windows_x86_64_gnullvm 0.42.2", + "windows_x86_64_msvc 0.42.2", +] + +[[package]] +name = "windows-sys" +version = "0.45.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "75283be5efb2831d37ea142365f009c02ec203cd29a3ebecbc093d52315b66d0" +dependencies = [ + "windows-targets 0.42.2", +] + +[[package]] +name = "windows-sys" 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"windows_i686_msvc 0.48.0", + "windows_x86_64_gnu 0.48.0", + "windows_x86_64_gnullvm 0.48.0", + "windows_x86_64_msvc 0.48.0", ] [[package]] name = "windows_aarch64_gnullvm" -version = "0.42.0" +version = "0.42.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "597a5118570b68bc08d8d59125332c54f1ba9d9adeedeef5b99b02ba2b0698f8" + +[[package]] +name = "windows_aarch64_gnullvm" +version = "0.48.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "41d2aa71f6f0cbe00ae5167d90ef3cfe66527d6f613ca78ac8024c3ccab9a19e" +checksum = "91ae572e1b79dba883e0d315474df7305d12f569b400fcf90581b06062f7e1bc" [[package]] name = "windows_aarch64_msvc" -version = "0.42.0" +version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dd0f252f5a35cac83d6311b2e795981f5ee6e67eb1f9a7f64eb4500fbc4dcdb4" +checksum = "e08e8864a60f06ef0d0ff4ba04124db8b0fb3be5776a5cd47641e942e58c4d43" + +[[package]] +name = "windows_aarch64_msvc" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b2ef27e0d7bdfcfc7b868b317c1d32c641a6fe4629c171b8928c7b08d98d7cf3" [[package]] name = "windows_i686_gnu" -version = "0.42.0" +version = "0.42.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "c61d927d8da41da96a81f029489353e68739737d3beca43145c8afec9a31a84f" + +[[package]] +name = "windows_i686_gnu" +version = "0.48.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fbeae19f6716841636c28d695375df17562ca208b2b7d0dc47635a50ae6c5de7" +checksum = "622a1962a7db830d6fd0a69683c80a18fda201879f0f447f065a3b7467daa241" [[package]] name = "windows_i686_msvc" -version = "0.42.0" +version = "0.42.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "44d840b6ec649f480a41c8d80f9c65108b92d89345dd94027bfe06ac444d1060" + +[[package]] +name = "windows_i686_msvc" +version = "0.48.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "84c12f65daa39dd2babe6e442988fc329d6243fdce47d7d2d155b8d874862246" +checksum = "4542c6e364ce21bf45d69fdd2a8e455fa38d316158cfd43b3ac1c5b1b19f8e00" [[package]] name = "windows_x86_64_gnu" -version = "0.42.0" +version = "0.42.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8de912b8b8feb55c064867cf047dda097f92d51efad5b491dfb98f6bbb70cb36" + +[[package]] +name = "windows_x86_64_gnu" +version = "0.48.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bf7b1b21b5362cbc318f686150e5bcea75ecedc74dd157d874d754a2ca44b0ed" +checksum = "ca2b8a661f7628cbd23440e50b05d705db3686f894fc9580820623656af974b1" [[package]] name = "windows_x86_64_gnullvm" -version = "0.42.0" +version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "09d525d2ba30eeb3297665bd434a54297e4170c7f1a44cad4ef58095b4cd2028" +checksum = "26d41b46a36d453748aedef1486d5c7a85db22e56aff34643984ea85514e94a3" + +[[package]] +name = "windows_x86_64_gnullvm" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7896dbc1f41e08872e9d5e8f8baa8fdd2677f29468c4e156210174edc7f7b953" [[package]] name = "windows_x86_64_msvc" -version = "0.42.0" +version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f40009d85759725a34da6d89a94e63d7bdc50a862acf0dbc7c8e488f1edcb6f5" +checksum = "9aec5da331524158c6d1a4ac0ab1541149c0b9505fde06423b02f5ef0106b9f0" + +[[package]] +name = "windows_x86_64_msvc" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1a515f5799fe4961cb532f983ce2b23082366b898e52ffbce459c86f67c8378a" + +[[package]] +name = "winnow" +version = "0.4.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ae8970b36c66498d8ff1d66685dc86b91b29db0c7739899012f63a63814b4b28" +dependencies = [ + "memchr", +] [[package]] name = "winreg" @@ -4428,15 +4684,15 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "d498dbd1fd7beb83c86709ae1c33ca50942889473473d287d56ce4770a18edfb" dependencies = [ "proc-macro2", - "syn", + "syn 1.0.109", "synstructure", ] [[package]] name = "zip" -version = "0.6.3" +version = "0.6.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "537ce7411d25e54e8ae21a7ce0b15840e7bfcff15b51d697ec3266cc76bdf080" +checksum = "0445d0fbc924bb93539b4316c11afb121ea39296f99a3c4c9edad09e3658cdef" dependencies = [ "aes", "byteorder", diff --git a/pkgs/servers/search/meilisearch/default.nix b/pkgs/servers/search/meilisearch/default.nix index 7bf796d18f37b..7c8d76d01ac05 100644 --- a/pkgs/servers/search/meilisearch/default.nix +++ b/pkgs/servers/search/meilisearch/default.nix @@ -7,7 +7,7 @@ , nix-update-script }: -let version = "1.1.1"; +let version = "1.2.0"; in rustPlatform.buildRustPackage { pname = "meilisearch"; @@ -17,7 +17,7 @@ rustPlatform.buildRustPackage { owner = "meilisearch"; repo = "MeiliSearch"; rev = "refs/tags/v${version}"; - hash = "sha256-catbSe4KT52vNaMD/rq4B7myw76Ki4NSBPX8nTgxT18="; + hash = "sha256-j+tz47dQFyKy51UAzFOc2YkAeYDUdsiteenC38cWrLI="; }; cargoBuildFlags = [ @@ -28,7 +28,7 @@ rustPlatform.buildRustPackage { lockFile = ./Cargo.lock; outputHashes = { "actix-web-static-files-3.0.5" = "sha256-2BN0RzLhdykvN3ceRLkaKwSZtel2DBqZ+uz4Qut+nII="; - "heed-0.12.5" = "sha256-atkKiK8rzqji47tJvUzbIXMw8U1uddHkHakPuEUvmFg="; + "heed-0.12.5" = "sha256-WOdpgc3sDNKBSYWB102xTxmY1SWljH9Q1+6xmj4Rb8Q="; "lmdb-rkv-sys-0.15.1" = "sha256-zLHTprwF7aa+2jaD7dGYmOZpJYFijMTb4I3ODflNUII="; "nelson-0.1.0" = "sha256-eF672quU576wmZSisk7oDR7QiDafuKlSg0BTQkXnzqY="; }; diff --git a/pkgs/servers/search/qdrant/Cargo.lock b/pkgs/servers/search/qdrant/Cargo.lock index 632b3aaa45b65..d3080b88205c0 100644 --- a/pkgs/servers/search/qdrant/Cargo.lock +++ b/pkgs/servers/search/qdrant/Cargo.lock @@ -380,53 +380,62 @@ checksum = "4b46cbb362ab8752921c97e041f5e366ee6297bd428a31275b9fcf1e380f7299" [[package]] name = "anstream" -version = "0.2.6" +version = "0.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "342258dd14006105c2b75ab1bd7543a03bdf0cfc94383303ac212a04939dff6f" +checksum = "9e579a7752471abc2a8268df8b20005e3eadd975f585398f17efcfd8d4927371" dependencies = [ "anstyle", "anstyle-parse", + "anstyle-query", "anstyle-wincon", - "concolor-override", - "concolor-query", + "colorchoice", "is-terminal", "utf8parse", ] [[package]] name = "anstyle" -version = "0.3.5" +version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "23ea9e81bd02e310c216d080f6223c179012256e5151c41db88d12c88a1684d2" +checksum = "41ed9a86bf92ae6580e0a31281f65a1b1d867c0cc68d5346e2ae128dddfa6a7d" [[package]] name = "anstyle-parse" -version = "0.1.1" +version = "0.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a7d1bb534e9efed14f3e5f44e7dd1a4f709384023a4165199a4241e18dff0116" +checksum = "e765fd216e48e067936442276d1d57399e37bce53c264d6fefbe298080cb57ee" dependencies = [ "utf8parse", ] [[package]] +name = "anstyle-query" +version = "1.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "5ca11d4be1bab0c8bc8734a9aa7bf4ee8316d462a08c6ac5052f888fef5b494b" +dependencies = [ + "windows-sys 0.48.0", +] + +[[package]] name = "anstyle-wincon" -version = "0.2.0" +version = "1.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c3127af6145b149f3287bb9a0d10ad9c5692dba8c53ad48285e5bec4063834fa" +checksum = "4bcd8291a340dd8ac70e18878bc4501dd7b4ff970cfa21c207d36ece51ea88fd" dependencies = [ "anstyle", - "windows-sys 0.45.0", + "windows-sys 0.48.0", ] [[package]] name = "anyhow" -version = "1.0.70" +version = "1.0.71" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7de8ce5e0f9f8d88245311066a578d72b7af3e7088f32783804676302df237e4" +checksum = "9c7d0618f0e0b7e8ff11427422b64564d5fb0be1940354bfe2e0529b18a9d9b8" [[package]] name = "api" -version = "1.1.3" +version = "1.2.2" dependencies = [ "chrono", "env_logger", @@ -527,19 +536,19 @@ dependencies = [ [[package]] name = "atomic_refcell" -version = "0.1.9" +version = "0.1.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "857253367827bd9d0fd973f0ef15506a96e79e41b0ad7aa691203a4e3214f6c8" +checksum = "79d6dc922a2792b006573f60b2648076355daeae5ce9cb59507e5908c9625d31" [[package]] name = "atomicwrites" -version = "0.4.0" +version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "09a580bfc0fc2370333eddb71de8c8614d5972e3a327438eb3acc22824a638bf" +checksum = "c1163d9d7c51de51a2b79d6df5e8888d11e9df17c752ce4a285fb6ca1580734e" dependencies = [ - "rustix 0.36.5", + "rustix 0.37.4", "tempfile", - "windows-sys 0.45.0", + "windows-sys 0.48.0", ] [[package]] @@ -642,9 +651,9 @@ dependencies = [ [[package]] name = "bindgen" -version = "0.64.0" +version = "0.65.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c4243e6031260db77ede97ad86c27e501d646a27ab57b59a574f725d98ab1fb4" +checksum = "cfdf7b466f9a4903edc73f95d6d2bcd5baf8ae620638762244d3f60143643cc5" dependencies = [ "bitflags", "cexpr", @@ -652,12 +661,13 @@ dependencies = [ "lazy_static", "lazycell", "peeking_take_while", + "prettyplease 0.2.4", "proc-macro2", "quote", "regex", "rustc-hash", "shlex", - "syn 1.0.107", + "syn 2.0.11", ] [[package]] @@ -700,7 +710,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5d6d530bdd2d52966a6d03b7a964add7ae1a288d25214066fd4b600f0f796400" dependencies = [ "arrayvec 0.4.12", - "constant_time_eq", + "constant_time_eq 0.1.5", ] [[package]] @@ -808,6 +818,19 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" [[package]] +name = "cgroups-rs" +version = "0.3.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "5b098e7c3a70d03c288fa0a96ccf13e770eb3d78c4cc0e1549b3c13215d5f965" +dependencies = [ + "libc", + "log", + "nix 0.25.1", + "regex", + "thiserror", +] + +[[package]] name = "chrono" version = "0.4.24" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -872,21 +895,9 @@ dependencies = [ [[package]] name = "clap" -version = "3.2.23" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "71655c45cb9845d3270c9d6df84ebe72b4dad3c2ba3f7023ad47c144e4e473a5" -dependencies = [ - "bitflags", - "clap_lex 0.2.4", - "indexmap", - "textwrap", -] - -[[package]] -name = "clap" -version = "4.2.1" +version = "4.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "046ae530c528f252094e4a77886ee1374437744b2bff1497aa898bbddbbb29b3" +checksum = "93aae7a4192245f70fe75dd9157fc7b4a5bf53e88d30bd4396f7d8f9284d5acc" dependencies = [ "clap_builder", "clap_derive", @@ -895,22 +906,22 @@ dependencies = [ [[package]] name = "clap_builder" -version = "4.2.1" +version = "4.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "223163f58c9a40c3b0a43e1c4b50a9ce09f007ea2cb1ec258a687945b4b7929f" +checksum = "4f423e341edefb78c9caba2d9c7f7687d0e72e89df3ce3394554754393ac3990" dependencies = [ "anstream", "anstyle", "bitflags", - "clap_lex 0.4.0", + "clap_lex", "strsim", ] [[package]] name = "clap_derive" -version = "4.2.0" +version = "4.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3f9644cd56d6b87dbe899ef8b053e331c0637664e9e21a33dfcdc36093f5c5c4" +checksum = "191d9573962933b4027f932c600cd252ce27a8ad5979418fe78e43c07996f27b" dependencies = [ "heck", "proc-macro2", @@ -920,18 +931,9 @@ dependencies = [ [[package]] name = "clap_lex" -version = "0.2.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2850f2f5a82cbf437dd5af4d49848fbdfc27c157c3d010345776f952765261c5" -dependencies = [ - "os_str_bytes", -] - -[[package]] -name = "clap_lex" -version = "0.4.0" +version = "0.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4f0807fb6f644c83f3e4ec014fec9858c1c8b26a7db8eb5f0bde5817df9c1df7" +checksum = "2da6da31387c7e4ef160ffab6d5e7f00c42626fe39aea70a7b0f1773f7dd6c1b" [[package]] name = "codespan-reporting" @@ -963,7 +965,7 @@ dependencies = [ "log", "merge", "num_cpus", - "ordered-float 3.6.0", + "ordered-float 3.7.0", "parking_lot", "pprof", "rand 0.8.5", @@ -988,6 +990,12 @@ dependencies = [ ] [[package]] +name = "colorchoice" +version = "1.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "acbf1af155f9b9ef647e42cdc158db4b64a1b61f743629225fde6f3e0be2a7c7" + +[[package]] name = "colored" version = "2.0.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -999,21 +1007,6 @@ dependencies = [ ] [[package]] -name = "concolor-override" -version = "1.0.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a855d4a1978dc52fb0536a04d384c2c0c1aa273597f08b77c8c4d3b2eec6037f" - -[[package]] -name = "concolor-query" -version = "0.3.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "88d11d52c3d7ca2e6d0040212be9e4dbbcd78b6447f535b6b561f449427944cf" -dependencies = [ - "windows-sys 0.45.0", -] - -[[package]] name = "config" version = "0.13.3" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1053,6 +1046,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "245097e9a4535ee1e3e3931fcfcd55a796a44c643e8596ff6566d68f09b87bbc" [[package]] +name = "constant_time_eq" +version = "0.2.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "13418e745008f7349ec7e449155f419a61b92b58a99cc3616942b926825ec76b" + +[[package]] name = "convert_case" version = "0.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1129,19 +1128,19 @@ dependencies = [ [[package]] name = "criterion" -version = "0.4.0" +version = "0.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e7c76e09c1aae2bc52b3d2f29e13c6572553b30c4aa1b8a49fd70de6412654cb" +checksum = "9f9c16c823fba76d9643cc387e9677d9771abe0827561381815215c47f808da9" dependencies = [ "anes", - "atty", "cast", "ciborium", - "clap 3.2.23", + "clap", "criterion-plot", + "is-terminal", "itertools", - "lazy_static", "num-traits", + "once_cell", "oorandom", "plotters", "rayon", @@ -1852,6 +1851,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "fed44880c466736ef9a5c5b5facefb5ed0785676d0c02d612db14e54f0d84286" [[package]] +name = "hex" +version = "0.4.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7f24254aa9a54b5c858eaee2f5bccdb46aaf0e486a595ed5fd8f86ba55232a70" + +[[package]] name = "http" version = "0.2.9" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2186,9 +2191,9 @@ checksum = "348108ab3fba42ec82ff6e9564fc4ca0247bdccdc68dd8af9764bbc79c3c8ffb" [[package]] name = "librocksdb-sys" -version = "0.10.0+7.9.2" +version = "0.11.0+8.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0fe4d5874f5ff2bc616e55e8c6086d478fcda13faf9495768a4aa1c22042d30b" +checksum = "d3386f101bcb4bd252d8e9d2fb41ec3b0862a15a62b478c355b2982efa469e3e" dependencies = [ "bindgen", "bzip2-sys", @@ -2308,6 +2313,15 @@ dependencies = [ ] [[package]] +name = "memmap2" +version = "0.6.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a0aa1b505aeecb0adb017db2b6a79a17a38e64f882a201f05e9de8a982cd6096" +dependencies = [ + "libc", +] + +[[package]] name = "memoffset" version = "0.7.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2413,6 +2427,18 @@ checksum = "ab250442c86f1850815b5d268639dff018c0627022bc1940eb2d642ca1ce12f0" [[package]] name = "nix" +version = "0.25.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "f346ff70e7dbfd675fe90590b92d59ef2de15a8779ae305ebcbfd3f0caf59be4" +dependencies = [ + "autocfg", + "bitflags", + "cfg-if", + "libc", +] + +[[package]] +name = "nix" version = "0.26.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "bfdda3d196821d6af13126e40375cdf7da646a96114af134d5f417a9a1dc8e1a" @@ -2440,6 +2466,15 @@ dependencies = [ ] [[package]] +name = "ntapi" +version = "0.4.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e8a3895c6391c39d7fe7ebc444a87eb2991b2a0bc718fdabd071eec617fc68e4" +dependencies = [ + "winapi", +] + +[[package]] name = "num-derive" version = "0.3.3" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2519,9 +2554,9 @@ checksum = "0ab1bc2a289d34bd04a330323ac98a1b4bc82c9d9fcb1e66b63caa84da26b575" [[package]] name = "openssl" -version = "0.10.50" +version = "0.10.52" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7e30d8bc91859781f0a943411186324d580f2bbeb71b452fe91ae344806af3f1" +checksum = "01b8574602df80f7b85fdfc5392fa884a4e3b3f4f35402c070ab34c3d3f78d56" dependencies = [ "bitflags", "cfg-if", @@ -2560,9 +2595,9 @@ dependencies = [ [[package]] name = "openssl-sys" -version = "0.9.85" +version = "0.9.87" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0d3d193fb1488ad46ffe3aaabc912cc931d02ee8518fe2959aea8ef52718b0c0" +checksum = "8e17f59264b2809d77ae94f0e1ebabc434773f370d6ca667bd223ea10e06cc7e" dependencies = [ "cc", "libc", @@ -2582,9 +2617,9 @@ dependencies = [ [[package]] name = "ordered-float" -version = "3.6.0" +version = "3.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "13a384337e997e6860ffbaa83708b2ef329fd8c54cb67a5f64d421e0f943254f" +checksum = "2fc2dbde8f8a79f2102cc474ceb0ad68e3b80b85289ea62389b60e66777e4213" dependencies = [ "num-traits", ] @@ -2600,12 +2635,6 @@ dependencies = [ ] [[package]] -name = "os_str_bytes" -version = "6.4.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9b7820b9daea5457c9f21c69448905d723fbd21136ccf521748f23fd49e723ee" - -[[package]] name = "parking_lot" version = "0.12.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2809,7 +2838,7 @@ dependencies = [ "inferno", "libc", "log", - "nix", + "nix 0.26.2", "once_cell", "parking_lot", "prost", @@ -2839,6 +2868,16 @@ dependencies = [ ] [[package]] +name = "prettyplease" +version = "0.2.4" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1ceca8aaf45b5c46ec7ed39fff75f57290368c1846d33d24a122ca81416ab058" +dependencies = [ + "proc-macro2", + "syn 2.0.11", +] + +[[package]] name = "proc-macro-error" version = "1.0.4" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2872,6 +2911,19 @@ dependencies = [ ] [[package]] +name = "procfs" +version = "0.15.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "943ca7f9f29bab5844ecd8fdb3992c5969b6622bb9609b9502fef9b4310e3f1f" +dependencies = [ + "bitflags", + "byteorder", + "hex", + "lazy_static", + "rustix 0.36.13", +] + +[[package]] name = "prometheus" version = "0.13.3" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -2887,16 +2939,15 @@ dependencies = [ [[package]] name = "proptest" -version = "1.1.0" +version = "1.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "29f1b898011ce9595050a68e60f90bad083ff2987a695a42357134c8381fba70" +checksum = "4e35c06b98bf36aba164cc17cb25f7e232f5c4aeea73baa14b8a9f0d92dbfa65" dependencies = [ "bit-set", "bitflags", "byteorder", "lazy_static", "num-traits", - "quick-error 2.0.1", "rand 0.8.5", "rand_chacha 0.3.1", "rand_xorshift", @@ -2908,9 +2959,9 @@ dependencies = [ [[package]] name = "prost" -version = "0.11.8" +version = "0.11.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e48e50df39172a3e7eb17e14642445da64996989bc212b583015435d39a58537" +checksum = "0b82eaa1d779e9a4bc1c3217db8ffbeabaae1dca241bf70183242128d48681cd" dependencies = [ "bytes", "prost-derive", @@ -2918,9 +2969,9 @@ dependencies = [ [[package]] name = "prost-build" -version = "0.11.8" +version = "0.11.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2c828f93f5ca4826f97fedcbd3f9a536c16b12cff3dbbb4a007f932bbad95b12" +checksum = "119533552c9a7ffacc21e099c24a0ac8bb19c2a2a3f363de84cd9b844feab270" dependencies = [ "bytes", "heck", @@ -2929,7 +2980,7 @@ dependencies = [ "log", "multimap", "petgraph", - "prettyplease", + "prettyplease 0.1.22", "prost", "prost-types", "regex", @@ -2940,9 +2991,9 @@ dependencies = [ [[package]] name = "prost-derive" -version = "0.11.8" +version = "0.11.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4ea9b0f8cbe5e15a8a042d030bd96668db28ecb567ec37d691971ff5731d2b1b" +checksum = "e5d2d8d10f3c6ded6da8b05b5fb3b8a5082514344d56c9f871412d29b4e075b4" dependencies = [ "anyhow", "itertools", @@ -2953,9 +3004,9 @@ dependencies = [ [[package]] name = "prost-types" -version = "0.11.8" +version = "0.11.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "379119666929a1afd7a043aa6cf96fa67a6dce9af60c88095a4686dbce4c9c88" +checksum = "213622a1460818959ac1181aaeb2dc9c7f63df720db7d788b3e24eacd1983e13" dependencies = [ "prost", ] @@ -2981,7 +3032,7 @@ dependencies = [ [[package]] name = "qdrant" -version = "1.1.3" +version = "1.2.2" dependencies = [ "actix-cors", "actix-files", @@ -2992,10 +3043,11 @@ dependencies = [ "api", "atty", "chrono", - "clap 4.2.1", + "clap", "collection", "colored", "config", + "constant_time_eq 0.2.5", "env_logger", "futures", "futures-util", @@ -3012,6 +3064,7 @@ dependencies = [ "reqwest", "rusty-hook", "schemars", + "sealed_test", "segment", "serde", "serde_cbor", @@ -3031,15 +3084,18 @@ dependencies = [ "tower-layer", "uuid", "validator", + "wal", ] [[package]] name = "quantization" version = "0.1.0" -source = "git+https://github.com/qdrant/quantization.git#9c2d0a60062559dbe7f699a6dfac9978e799e3e5" +source = "git+https://github.com/qdrant/quantization.git#3443cbbd0943f3e87f39c966ef111e2a85f05174" dependencies = [ "cc", "permutation_iterator", + "rand 0.8.5", + "rayon", "serde", "serde_json", ] @@ -3051,12 +3107,6 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "a1d01941d82fa2ab50be1e79e6714289dd7cde78eba4c074bc5a4374f650dfe0" [[package]] -name = "quick-error" -version = "2.0.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a993555f31e5a609f617c12db6250dedcac1b0a85076912c436e6fc9b2c8e6a3" - -[[package]] name = "quick-xml" version = "0.26.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3256,9 +3306,9 @@ checksum = "456c603be3e8d448b072f410900c09faf164fbce2d480456f50eea6e25f9c848" [[package]] name = "reqwest" -version = "0.11.16" +version = "0.11.17" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "27b71749df584b7f4cac2c426c127a7c785a5106cc98f7a8feb044115f0fa254" +checksum = "13293b639a097af28fc8a90f22add145a9c954e49d77da06263d58cf44d5fb91" dependencies = [ "base64 0.21.0", "bytes", @@ -3352,9 +3402,9 @@ checksum = "e5864e7ef1a6b7bcf1d6ca3f655e65e724ed3b52546a0d0a663c991522f552ea" [[package]] name = "rocksdb" -version = "0.20.1" +version = "0.21.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "015439787fce1e75d55f279078d33ff14b4af5d93d995e8838ee4631301c8a99" +checksum = "bb6f170a4041d50a0ce04b0d2e14916d6ca863ea2e422689a5b694395d299ffe" dependencies = [ "libc", "librocksdb-sys", @@ -3429,16 +3479,16 @@ dependencies = [ [[package]] name = "rustix" -version = "0.36.5" +version = "0.36.13" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a3807b5d10909833d3e9acd1eb5fb988f79376ff10fce42937de71a449c4c588" +checksum = "3a38f9520be93aba504e8ca974197f46158de5dcaa9fa04b57c57cd6a679d658" dependencies = [ "bitflags", - "errno 0.2.8", + "errno 0.3.0", "io-lifetimes 1.0.3", "libc", "linux-raw-sys 0.1.4", - "windows-sys 0.42.0", + "windows-sys 0.45.0", ] [[package]] @@ -3511,7 +3561,19 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "cb3dcc6e454c328bb824492db107ab7c0ae8fcffe4ad210136ef014458c1bc4f" dependencies = [ "fnv", - "quick-error 1.2.3", + "quick-error", + "tempfile", + "wait-timeout", +] + +[[package]] +name = "rusty-forkfork" +version = "0.4.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7ce85af4dfa2fb0c0143121ab5e424c71ea693867357c9159b8777b59984c218" +dependencies = [ + "fnv", + "quick-error", "tempfile", "wait-timeout", ] @@ -3610,6 +3672,28 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1c107b6f4780854c8b126e228ea8869f4d7b71260f962fefb57b996b8959ba6b" [[package]] +name = "sealed_test" +version = "1.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1a608d94641cc17fe203b102db2ae86d47a236630192f0244ddbbbb0044c0272" +dependencies = [ + "fs_extra", + "rusty-forkfork", + "sealed_test_derive", + "tempfile", +] + +[[package]] +name = "sealed_test_derive" +version = "1.0.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7b672e005ae58fef5da619d90b9f1c5b44b061890f4a371b3c96257a8a15e697" +dependencies = [ + "quote", + "syn 1.0.107", +] + +[[package]] name = "security-framework" version = "2.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -3634,12 +3718,13 @@ dependencies = [ [[package]] name = "segment" -version = "0.5.0" +version = "0.6.0" dependencies = [ "atomic_refcell", "atomicwrites", "bincode", "bitvec", + "cgroups-rs", "chrono", "criterion", "fs_extra", @@ -3647,13 +3732,14 @@ dependencies = [ "geohash", "itertools", "log", - "memmap2", + "memmap2 0.6.1", "num-derive", "num-traits", "num_cpus", - "ordered-float 3.6.0", + "ordered-float 3.7.0", "parking_lot", "pprof", + "procfs", "quantization", "rand 0.8.5", "rand_distr", @@ -3667,6 +3753,7 @@ dependencies = [ "serde-value", "serde_cbor", "serde_json", + "sysinfo", "tar", "tempfile", "thiserror", @@ -3684,9 +3771,9 @@ checksum = "bebd363326d05ec3e2f532ab7660680f3b02130d780c299bca73469d521bc0ed" [[package]] name = "serde" -version = "1.0.159" +version = "1.0.163" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3c04e8343c3daeec41f58990b9d77068df31209f2af111e059e9fe9646693065" +checksum = "2113ab51b87a539ae008b5c6c02dc020ffa39afd2d83cffcb3f4eb2722cebec2" dependencies = [ "serde_derive", ] @@ -3713,9 +3800,9 @@ dependencies = [ [[package]] name = "serde_derive" -version = "1.0.159" +version = "1.0.163" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4c614d17805b093df4b147b51339e7e44bf05ef59fba1e45d83500bcfb4d8585" +checksum = "8c805777e3930c8883389c602315a24224bcc738b63905ef87cd1420353ea93e" dependencies = [ "proc-macro2", "quote", @@ -3735,9 +3822,9 @@ dependencies = [ [[package]] name = "serde_json" -version = "1.0.95" +version = "1.0.96" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d721eca97ac802aa7777b701877c8004d950fc142651367300d21c1cc0194744" +checksum = "057d394a50403bcac12672b2b18fb387ab6d289d957dab67dd201875391e52f1" dependencies = [ "itoa", "ryu", @@ -3959,7 +4046,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "1b55cdc318ede251d0957f07afe5fed912119b8c1bc5a7804151826db999e737" dependencies = [ "debugid", - "memmap2", + "memmap2 0.5.10", "stable_deref_trait", "uuid", ] @@ -4014,6 +4101,21 @@ dependencies = [ ] [[package]] +name = "sysinfo" +version = "0.29.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "02f1dc6930a439cc5d154221b5387d153f8183529b07c19aca24ea31e0a167e1" +dependencies = [ + "cfg-if", + "core-foundation-sys", + "libc", + "ntapi", + "once_cell", + "rayon", + "winapi", +] + +[[package]] name = "tap" version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4063,12 +4165,6 @@ dependencies = [ ] [[package]] -name = "textwrap" -version = "0.16.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "222a222a5bfe1bba4a77b45ec488a741b3cb8872e5e499451fd7d0129c9c7c3d" - -[[package]] name = "thiserror" version = "1.0.40" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4185,9 +4281,9 @@ checksum = "cda74da7e1a664f795bb1f8a87ec406fb89a02522cf6e50620d016add6dbbf5c" [[package]] name = "tokio" -version = "1.27.0" +version = "1.28.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d0de47a4eecbe11f498978a9b29d792f0d2692d1dd003650c24c76510e3bc001" +checksum = "0aa32867d44e6f2ce3385e89dceb990188b8bb0fb25b0cf576647a6f98ac5105" dependencies = [ "autocfg", "bytes", @@ -4199,7 +4295,7 @@ dependencies = [ "signal-hook-registry", "socket2", "tokio-macros", - "windows-sys 0.45.0", + "windows-sys 0.48.0", ] [[package]] @@ -4214,9 +4310,9 @@ dependencies = [ [[package]] name = "tokio-macros" -version = "2.0.0" +version = "2.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "61a573bdc87985e9d6ddeed1b3d864e8a302c847e40d647746df2f1de209d1ce" +checksum = "630bdcf245f78637c13ec01ffae6187cca34625e8c63150d424b59e55af2675e" dependencies = [ "proc-macro2", "quote", @@ -4302,9 +4398,9 @@ dependencies = [ [[package]] name = "tonic" -version = "0.9.1" +version = "0.9.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "38bd8e87955eb13c1986671838177d6792cdc52af9bffced0d2c8a9a7f741ab3" +checksum = "3082666a3a6433f7f511c7192923fa1fe07c69332d3c6a2e6bb040b569199d5a" dependencies = [ "async-stream", "async-trait", @@ -4334,11 +4430,11 @@ dependencies = [ [[package]] name = "tonic-build" -version = "0.9.1" +version = "0.9.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0f60a933bbea70c95d633c04c951197ddf084958abaa2ed502a3743bdd8d8dd7" +checksum = "a6fdaae4c2c638bb70fe42803a26fbd6fc6ac8c72f5c59f67ecc2a2dcabf4b07" dependencies = [ - "prettyplease", + "prettyplease 0.1.22", "proc-macro2", "prost-build", "quote", @@ -4496,9 +4592,9 @@ checksum = "711b9620af191e0cdc7468a8d14e709c3dcdb115b36f838e601583af800a370a" [[package]] name = "uuid" -version = "1.3.1" +version = "1.3.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5b55a3fef2a1e3b3a00ce878640918820d3c51081576ac657d23af9fc7928fdb" +checksum = "345444e32442451b267fc254ae85a209c64be56d2890e601a0c37ff0c3c5ecd2" dependencies = [ "getrandom 0.2.8", "serde", @@ -4570,7 +4666,7 @@ dependencies = [ [[package]] name = "wal" version = "0.1.2" -source = "git+https://github.com/qdrant/wal.git?rev=9fe5a0c97c148152adacca0df238be6b1bf7d704#9fe5a0c97c148152adacca0df238be6b1bf7d704" +source = "git+https://github.com/qdrant/wal.git?rev=f3029ad0e1632d5e375db55695e33121df54aa5c#f3029ad0e1632d5e375db55695e33121df54aa5c" dependencies = [ "byteorder", "crc", @@ -4579,7 +4675,7 @@ dependencies = [ "env_logger", "fs4", "log", - "memmap2", + "memmap2 0.6.1", "rand 0.8.5", "rand_distr", "rustix 0.37.4", @@ -4793,12 +4889,12 @@ version = "0.42.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5a3e1820f08b8513f676f7ab6c1f99ff312fb97b553d30ff4dd86f9f15728aa7" dependencies = [ - "windows_aarch64_gnullvm", + "windows_aarch64_gnullvm 0.42.2", "windows_aarch64_msvc 0.42.2", "windows_i686_gnu 0.42.2", "windows_i686_msvc 0.42.2", "windows_x86_64_gnu 0.42.2", - "windows_x86_64_gnullvm", + "windows_x86_64_gnullvm 0.42.2", "windows_x86_64_msvc 0.42.2", ] @@ -4808,7 +4904,16 @@ version = "0.45.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "75283be5efb2831d37ea142365f009c02ec203cd29a3ebecbc093d52315b66d0" dependencies = [ - "windows-targets", + "windows-targets 0.42.2", +] + +[[package]] +name = "windows-sys" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "677d2418bec65e3338edb076e806bc1ec15693c5d0104683f2efe857f61056a9" +dependencies = [ + "windows-targets 0.48.0", ] [[package]] @@ -4817,22 +4922,43 @@ version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8e5180c00cd44c9b1c88adb3693291f1cd93605ded80c250a75d472756b4d071" dependencies = [ - "windows_aarch64_gnullvm", + "windows_aarch64_gnullvm 0.42.2", "windows_aarch64_msvc 0.42.2", "windows_i686_gnu 0.42.2", "windows_i686_msvc 0.42.2", "windows_x86_64_gnu 0.42.2", - "windows_x86_64_gnullvm", + "windows_x86_64_gnullvm 0.42.2", "windows_x86_64_msvc 0.42.2", ] [[package]] +name = "windows-targets" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7b1eb6f0cd7c80c79759c929114ef071b87354ce476d9d94271031c0497adfd5" +dependencies = [ + "windows_aarch64_gnullvm 0.48.0", + "windows_aarch64_msvc 0.48.0", + "windows_i686_gnu 0.48.0", + "windows_i686_msvc 0.48.0", + "windows_x86_64_gnu 0.48.0", + "windows_x86_64_gnullvm 0.48.0", + "windows_x86_64_msvc 0.48.0", +] + +[[package]] name = "windows_aarch64_gnullvm" version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "597a5118570b68bc08d8d59125332c54f1ba9d9adeedeef5b99b02ba2b0698f8" [[package]] +name = "windows_aarch64_gnullvm" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "91ae572e1b79dba883e0d315474df7305d12f569b400fcf90581b06062f7e1bc" + +[[package]] name = "windows_aarch64_msvc" version = "0.36.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4845,6 +4971,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "e08e8864a60f06ef0d0ff4ba04124db8b0fb3be5776a5cd47641e942e58c4d43" [[package]] +name = "windows_aarch64_msvc" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b2ef27e0d7bdfcfc7b868b317c1d32c641a6fe4629c171b8928c7b08d98d7cf3" + +[[package]] name = "windows_i686_gnu" version = "0.36.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4857,6 +4989,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c61d927d8da41da96a81f029489353e68739737d3beca43145c8afec9a31a84f" [[package]] +name = "windows_i686_gnu" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "622a1962a7db830d6fd0a69683c80a18fda201879f0f447f065a3b7467daa241" + +[[package]] name = "windows_i686_msvc" version = "0.36.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4869,6 +5007,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "44d840b6ec649f480a41c8d80f9c65108b92d89345dd94027bfe06ac444d1060" [[package]] +name = "windows_i686_msvc" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "4542c6e364ce21bf45d69fdd2a8e455fa38d316158cfd43b3ac1c5b1b19f8e00" + +[[package]] name = "windows_x86_64_gnu" version = "0.36.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4881,12 +5025,24 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8de912b8b8feb55c064867cf047dda097f92d51efad5b491dfb98f6bbb70cb36" [[package]] +name = "windows_x86_64_gnu" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ca2b8a661f7628cbd23440e50b05d705db3686f894fc9580820623656af974b1" + +[[package]] name = "windows_x86_64_gnullvm" version = "0.42.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "26d41b46a36d453748aedef1486d5c7a85db22e56aff34643984ea85514e94a3" [[package]] +name = "windows_x86_64_gnullvm" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7896dbc1f41e08872e9d5e8f8baa8fdd2677f29468c4e156210174edc7f7b953" + +[[package]] name = "windows_x86_64_msvc" version = "0.36.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -4899,6 +5055,12 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "9aec5da331524158c6d1a4ac0ab1541149c0b9505fde06423b02f5ef0106b9f0" [[package]] +name = "windows_x86_64_msvc" +version = "0.48.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1a515f5799fe4961cb532f983ce2b23082366b898e52ffbce459c86f67c8378a" + +[[package]] name = "winreg" version = "0.10.1" source = "registry+https://github.com/rust-lang/crates.io-index" diff --git a/pkgs/servers/search/qdrant/default.nix b/pkgs/servers/search/qdrant/default.nix index 184d65b75feb8..075f46eb065fe 100644 --- a/pkgs/servers/search/qdrant/default.nix +++ b/pkgs/servers/search/qdrant/default.nix @@ -11,20 +11,20 @@ rustPlatform.buildRustPackage rec { pname = "qdrant"; - version = "1.1.3"; + version = "1.2.2"; src = fetchFromGitHub { owner = "qdrant"; repo = "qdrant"; rev = "refs/tags/v${version}"; - sha256 = "sha256-CGGJLyhhwQvW9AIzA7Fg85CvPbnuyELR+mmhoc4hJtk="; + sha256 = "sha256-1UJZibj7twM/4z9w+ebOI0AVjPZGz7B1BWw0M0pMQ+k="; }; cargoLock = { lockFile = ./Cargo.lock; outputHashes = { - "quantization-0.1.0" = "sha256-4TY08ScRbL4zVG428BTZu42ocAsPk/8wM+zzI8EFSrs="; - "wal-0.1.2" = "sha256-EfCvwgHMfyiId8VjV+yFyNqoIv6fxF8UFcw1s46hF5k="; + "quantization-0.1.0" = "sha256-mhiVicQXj8639bX2mGp9XnjTNVFdd6mnk+B1B1f3ywA="; + "wal-0.1.2" = "sha256-oZ6xij59eIpCGcFL2Ds6E180l1SGIRMOq7OcLc1TpxY="; }; }; diff --git a/pkgs/servers/search/zinc/default.nix b/pkgs/servers/search/zincsearch/default.nix index 3c844ee5eb8f4..a6079b75d91ca 100644 --- a/pkgs/servers/search/zinc/default.nix +++ b/pkgs/servers/search/zincsearch/default.nix @@ -3,13 +3,14 @@ , fetchFromGitHub , buildNpmPackage }: + let - version = "0.3.6"; + version = "0.4.5"; src = fetchFromGitHub { owner = "zinclabs"; - repo = "zinc"; + repo = "zincsearch"; rev = "v${version}"; - sha256 = "sha256-7pPVX/jdHN7EMss6/uRZqJO+zDfDLZv/iG5iboB+s64="; + hash = "sha256-V4eI7cur+KI+PEcplQJdTBaT0czpN0ENN30W5rrzE+k="; }; webui = buildNpmPackage { @@ -18,9 +19,11 @@ let sourceRoot = "source/web"; - npmDepsHash = "sha256-clRijS+hxWc1LwlAKjEEk/6XPBYC6CcLq5g/ry4a04g="; + npmDepsHash = "sha256-2AjUaEOn2Tj+X4f42SvNq1kX07WxkB1sl5KtGdCjbdw="; - CYPRESS_INSTALL_BINARY = 0; # cypress tries to download binaries otherwise + env = { + CYPRESS_INSTALL_BINARY = 0; # cypress tries to download binaries otherwise + }; installPhase = '' mkdir -p $out/share @@ -28,28 +31,27 @@ let ''; }; in + buildGoModule rec { - pname = "zinc"; + pname = "zincsearch"; inherit src version; preBuild = '' cp -r ${webui}/share/zinc-ui web/dist ''; - vendorHash = "sha256-akjb0cxHbITKS26c+7lVSHWO/KRoQVVKzAOra+tdAD8="; - subPackages = [ "cmd/zinc" ]; - - CGO_ENABLED = 0; + vendorHash = "sha256-TYs1iRUA4WC3iMS508c7jUC3Co86CKYjL5WFlnoyPhg="; + subPackages = [ "cmd/zincsearch" ]; ldflags = [ "-s" "-w" - "-X github.com/zinclabs/zinc/pkg/meta.Version=${version}" + "-X github.com/zinclabs/zincsearch/pkg/meta.Version=${version}" ]; meta = with lib; { description = "A lightweight alternative to elasticsearch that requires minimal resources, written in Go"; - homepage = "https://github.com/zinclabs/zinc"; + homepage = "https://zinc.dev"; license = licenses.asl20; maintainers = with maintainers; [ dit7ya ]; }; diff --git a/pkgs/servers/sql/gluesql/default.nix b/pkgs/servers/sql/gluesql/default.nix new file mode 100644 index 0000000000000..1f48d19f7b8dc --- /dev/null +++ b/pkgs/servers/sql/gluesql/default.nix @@ -0,0 +1,32 @@ +{ lib +, fetchFromGitHub +, rustPlatform +, nix-update-script +}: + +let + pname = "gluesql"; + version = "0.14.0"; +in +rustPlatform.buildRustPackage { + inherit pname version; + + src = fetchFromGitHub { + owner = "gluesql"; + repo = pname; + rev = "v${version}"; + hash = "sha256-z2fpyPJfyPtO13Ly7XRmMW3rp6G3jNLsMMFz83Wmr0E="; + }; + + cargoHash = "sha256-xInwN/wZpHD3/vKcA+oYL9tmSD7P7/L8ZZOXZq0gkac="; + + passthru.updateScript = nix-update-script { }; + + meta = with lib; { + description = "GlueSQL is quite sticky. It attaches to anywhere."; + homepage = "https://github.com/gluesql/gluesql"; + license = licenses.asl20; + maintainers = with maintainers; [ happysalada ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/servers/sql/pgbouncer/default.nix b/pkgs/servers/sql/pgbouncer/default.nix index aaae684409fd9..7d3d3e949ed3f 100644 --- a/pkgs/servers/sql/pgbouncer/default.nix +++ b/pkgs/servers/sql/pgbouncer/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "pgbouncer"; - version = "1.19.0"; + version = "1.19.1"; src = fetchurl { url = "https://www.pgbouncer.org/downloads/files/${version}/${pname}-${version}.tar.gz"; - sha256 = "sha256-rwsF6X0OH9mtRf4A6m0qk0xjB19n9+LM7yylnj2M5oI="; + hash = "sha256-WMPv+btywYEzso4fA0/Vk1bqdigcZeEnQyyhAcIIo5Q="; }; nativeBuildInputs = [ pkg-config ]; @@ -16,6 +16,7 @@ stdenv.mkDerivation rec { meta = with lib; { homepage = "https://www.pgbouncer.org/"; description = "Lightweight connection pooler for PostgreSQL"; + changelog = "https://github.com/pgbouncer/pgbouncer/releases/tag/pgbouncer_${replaceStrings ["."] ["_"] version}"; license = licenses.isc; maintainers = with maintainers; [ _1000101 ]; platforms = platforms.all; diff --git a/pkgs/servers/sql/postgresql/default.nix b/pkgs/servers/sql/postgresql/default.nix index 0df5b97cf3cf7..307c9f5f4e328 100644 --- a/pkgs/servers/sql/postgresql/default.nix +++ b/pkgs/servers/sql/postgresql/default.nix @@ -2,9 +2,9 @@ let generic = # dependencies - { stdenv, lib, fetchurl, makeWrapper + { stdenv, lib, fetchurl, makeWrapper, fetchpatch , glibc, zlib, readline, openssl, icu, lz4, zstd, systemd, libossp_uuid - , pkg-config, libxml2, tzdata, libkrb5 + , pkg-config, libxml2, tzdata, libkrb5, substituteAll, darwin # This is important to obtain a version of `libpq` that does not depend on systemd. , enableSystemd ? lib.meta.availableOn stdenv.hostPlatform systemd && !stdenv.hostPlatform.isStatic @@ -103,6 +103,24 @@ let ./patches/hardcode-pgxs-path.patch ./patches/specify_pkglibdir_at_runtime.patch ./patches/findstring.patch + + (substituteAll { + src = ./locale-binary-path.patch; + locale = "${if stdenv.isDarwin then darwin.adv_cmds else lib.getBin stdenv.cc.libc}/bin/locale"; + }) + + ] ++ lib.optionals stdenv'.hostPlatform.isMusl [ + # Fixes for musl libc + # These patches are not properly guarded and should NOT be enabled everywhere + (fetchpatch { + url = "https://git.alpinelinux.org/aports/plain/main/postgresql14/disable-test-collate.icu.utf8.patch?id=56999e6d0265ceff5c5239f85fdd33e146f06cb7"; + hash = "sha256-pnl+wM3/IUyq5iJzk+h278MDA9R0GQXQX8d4wJcB2z4="; + }) + (fetchpatch { + url = "https://git.alpinelinux.org/aports/plain/main/postgresql14/icu-collations-hack.patch?id=56999e6d0265ceff5c5239f85fdd33e146f06cb7"; + hash = "sha256-Yb6lMBDqeVP/BLMyIr5rmR6OkaVzo68cV/+cL2LOe/M="; + }) + ] ++ lib.optionals stdenv'.isLinux [ (if atLeast "13" then ./patches/socketdir-in-run-13.patch else ./patches/socketdir-in-run.patch) ]; diff --git a/pkgs/servers/sql/postgresql/ext/apache_datasketches.nix b/pkgs/servers/sql/postgresql/ext/apache_datasketches.nix new file mode 100644 index 0000000000000..47873e725c4b6 --- /dev/null +++ b/pkgs/servers/sql/postgresql/ext/apache_datasketches.nix @@ -0,0 +1,71 @@ +{ stdenv, lib, fetchFromGitHub, postgresql, boost182, nixosTests }: + +stdenv.mkDerivation (finalAttrs: { + pname = "apache_datasketches"; + version = "1.6.0"; + + srcs = [ + ( fetchFromGitHub { + name = "datasketches-postgresql"; + owner = "apache"; + repo = "datasketches-postgresql"; + rev = "refs/tags/${finalAttrs.version}"; + hash = "sha256-sz94fIe7nyWhjiw8FAm6ZzVpB0sAK5YxUrtbaZt/guA="; + }) + ( fetchFromGitHub { + name = "datasketches-cpp"; + owner = "apache"; + repo = "datasketches-cpp"; + rev = "refs/tags/4.1.0"; + hash = "sha256-vPoFzRxOXlEAiiHH9M5S6255ahzaKsGNYS0cdHwrRYw="; + }) + ]; + sourceRoot = "datasketches-postgresql"; + + buildInputs = [ postgresql boost182 ]; + + patchPhase = '' + runHook prePatch + cp -r ../datasketches-cpp . + runHook postPatch + ''; + + installPhase = '' + runHook preInstall + install -D -m 644 ./datasketches.so -t $out/lib/ + cat \ + sql/datasketches_cpc_sketch.sql \ + sql/datasketches_kll_float_sketch.sql \ + sql/datasketches_kll_double_sketch.sql \ + sql/datasketches_theta_sketch.sql \ + sql/datasketches_frequent_strings_sketch.sql \ + sql/datasketches_hll_sketch.sql \ + sql/datasketches_aod_sketch.sql \ + sql/datasketches_req_float_sketch.sql \ + sql/datasketches_quantiles_double_sketch.sql \ + > sql/datasketches--${finalAttrs.version}.sql + install -D -m 644 ./datasketches.control -t $out/share/postgresql/extension + install -D -m 644 \ + ./sql/datasketches--${finalAttrs.version}.sql \ + ./sql/datasketches--1.3.0--1.4.0.sql \ + ./sql/datasketches--1.4.0--1.5.0.sql \ + ./sql/datasketches--1.5.0--1.6.0.sql \ + -t $out/share/postgresql/extension + runHook postInstall + ''; + + passthru.tests.apache_datasketches = nixosTests.apache_datasketches; + + meta = { + description = "PostgreSQL extension providing approximate algorithms for distinct item counts, quantile estimation and frequent items detection"; + longDescription = '' + apache_datasketches is an extension to support approximate algorithms on PostgreSQL. The implementation + is based on the Apache Datasketches CPP library, and provides support for HyperLogLog, + Compressed Probabilistic Counting, KLL, Frequent strings, and Theta sketches. + ''; + homepage = "https://datasketches.apache.org/"; + platforms = postgresql.meta.platforms; + license = lib.licenses.asl20; + maintainers = with lib.maintainers; [ mmusnjak ]; + }; +}) diff --git a/pkgs/servers/sql/postgresql/ext/pgroonga.nix b/pkgs/servers/sql/postgresql/ext/pgroonga.nix index 3fdc7c212ce31..4d9b0fce6f2e8 100644 --- a/pkgs/servers/sql/postgresql/ext/pgroonga.nix +++ b/pkgs/servers/sql/postgresql/ext/pgroonga.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "pgroonga"; - version = "3.0.1"; + version = "3.0.5"; src = fetchurl { url = "https://packages.groonga.org/source/${pname}/${pname}-${version}.tar.gz"; - sha256 = "sha256-lsUtM6AM/AVjDGP9vSzj7Vxx+3+IS4cr7ctmU4C6Ml8="; + hash = "sha256-5cVfZk2bFop/EQjvfObiN/AF/iv3DqDIKb/BkbEyKbE="; }; nativeBuildInputs = [ pkg-config ]; @@ -33,6 +33,7 @@ stdenv.mkDerivation rec { You can use super fast full text search feature against all languages by installing PGroonga into your PostgreSQL. ''; homepage = "https://pgroonga.github.io/"; + changelog = "https://github.com/pgroonga/pgroonga/releases/tag/${version}"; license = licenses.postgresql; platforms = postgresql.meta.platforms; maintainers = with maintainers; [ DerTim1 ]; diff --git a/pkgs/servers/sql/postgresql/locale-binary-path.patch b/pkgs/servers/sql/postgresql/locale-binary-path.patch new file mode 100644 index 0000000000000..08e90bce750ca --- /dev/null +++ b/pkgs/servers/sql/postgresql/locale-binary-path.patch @@ -0,0 +1,13 @@ +diff --git a/src/backend/commands/collationcmds.c b/src/backend/commands/collationcmds.c +index fcfc02d..d011394 100644 +--- a/src/backend/commands/collationcmds.c ++++ b/src/backend/commands/collationcmds.c +@@ -611,7 +611,7 @@ pg_import_system_collations(PG_FUNCTION_ARGS) + aliases = (CollAliasData *) palloc(maxaliases * sizeof(CollAliasData)); + naliases = 0; + +- locale_a_handle = OpenPipeStream("locale -a", "r"); ++ locale_a_handle = OpenPipeStream("@locale@ -a", "r"); + if (locale_a_handle == NULL) + ereport(ERROR, + (errcode_for_file_access(), diff --git a/pkgs/servers/sql/postgresql/packages.nix b/pkgs/servers/sql/postgresql/packages.nix index c94b91f02e2b3..8a8fd8cca5635 100644 --- a/pkgs/servers/sql/postgresql/packages.nix +++ b/pkgs/servers/sql/postgresql/packages.nix @@ -2,6 +2,8 @@ self: super: { age = super.callPackage ./ext/age.nix { }; + apache_datasketches = super.callPackage ./ext/apache_datasketches.nix { }; + jsonb_deep_sum = super.callPackage ./ext/jsonb_deep_sum.nix { }; periods = super.callPackage ./ext/periods.nix { }; diff --git a/pkgs/servers/squid/default.nix b/pkgs/servers/squid/default.nix index 26fe887cb7745..3ce09c88a848b 100644 --- a/pkgs/servers/squid/default.nix +++ b/pkgs/servers/squid/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { pname = "squid"; - version = "5.8"; + version = "5.9"; src = fetchurl { url = "http://www.squid-cache.org/Versions/v5/${pname}-${version}.tar.xz"; - hash = "sha256-fpafjI31acuGRtZ+5Z/b8mJ76toSlUwwHnwanBwRc08="; + hash = "sha256-P+XCAH2idXRGr5G275dPFUsggSCpo5OW6mgeXEq7BLU="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/servers/static-web-server/default.nix b/pkgs/servers/static-web-server/default.nix index 499de87d37479..05e3e7382ec6a 100644 --- a/pkgs/servers/static-web-server/default.nix +++ b/pkgs/servers/static-web-server/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "static-web-server"; - version = "2.16.0"; + version = "2.17.0"; src = fetchFromGitHub { owner = "static-web-server"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ZHJGUgFCguUszcpzXwAK1XH3Ds4b87pyiohabvIwMX4="; + sha256 = "sha256-YrcwEjLL7FRn4vod/Nd7Rh+njY/80JEnL/QetIu3YtY="; }; - cargoHash = "sha256-7JOJknBJuX0anzd6Oqp3HEzYtEQfRkcHdjNBzW59P+E="; + cargoHash = "sha256-BtA2DsnIo1XwIOIjgmSUfuq4IrUYhp+yJMSrLd7vL5c="; buildInputs = lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.Security diff --git a/pkgs/servers/tautulli/default.nix b/pkgs/servers/tautulli/default.nix index 3d7c1a6b3c30c..6336538d9d18e 100644 --- a/pkgs/servers/tautulli/default.nix +++ b/pkgs/servers/tautulli/default.nix @@ -2,7 +2,7 @@ buildPythonApplication rec { pname = "Tautulli"; - version = "2.12.3"; + version = "2.12.4"; format = "other"; pythonPath = [ setuptools ]; @@ -12,7 +12,7 @@ buildPythonApplication rec { owner = "Tautulli"; repo = pname; rev = "v${version}"; - sha256 = "sha256-UENYnXEdrKlU+gUmGdw46jslN8B5qWPDIFU03Z7aMps="; + sha256 = "sha256-9E2qEdPfxnvx7WCHE/I2rP6Qk9CtsVrisQbq202+2uE="; }; installPhase = '' diff --git a/pkgs/servers/tidb/default.nix b/pkgs/servers/tidb/default.nix index 464d45da24d3b..9f851f8fa2831 100644 --- a/pkgs/servers/tidb/default.nix +++ b/pkgs/servers/tidb/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "tidb"; - version = "7.0.0"; + version = "7.1.0"; src = fetchFromGitHub { owner = "pingcap"; repo = pname; rev = "v${version}"; - sha256 = "sha256-giYAD6BJqK1Z9Rkpy3Xhf4Y4+lmZW6y1CJur0OqZHTU="; + sha256 = "sha256-KiF76SD2YbZ4GFXiuCLODIb1guOTYJ7MHCFTVQKytyY="; }; - vendorHash = "sha256-IyVfML4XwogW/SMoZoZcQA32DxuHzuBoNePqk3u1vSw="; + vendorHash = "sha256-yfsOIQGqHk6kX2usQwkSHGcaOkJnF8ZFfM58Owpjvec="; ldflags = [ "-s" diff --git a/pkgs/servers/unifiedpush-common-proxies/default.nix b/pkgs/servers/unifiedpush-common-proxies/default.nix index 0198c22baba95..8e2f81fa4ad35 100644 --- a/pkgs/servers/unifiedpush-common-proxies/default.nix +++ b/pkgs/servers/unifiedpush-common-proxies/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "unifiedpush-common-proxies"; - version = "1.3.0"; + version = "1.5.0"; src = fetchFromGitHub { owner = "unifiedpush"; repo = "common-proxies"; rev = "v${version}"; - sha256 = "sha256-spOLgSqiEySVc7imeTeg83MO5cw5nea0qD6OV8JRI6Y="; + sha256 = "sha256-eonKHhaH7mAdW7ouprQivMxKPGFv0s1m/S8jGwid8kM="; }; - vendorSha256 = "13mxdjc9fvajl0w78a5g1cqadgmxsx74zz8npp5h2s68zkl8sjxk"; + vendorSha256 = "sha256-s0uN6PzIaAHLvRb9T07Xvb6mMAuvKHQ4oFJtl5hsvY4="; meta = with lib; { description = "A set of rewrite proxies and gateways for UnifiedPush"; diff --git a/pkgs/servers/web-apps/changedetection-io/default.nix b/pkgs/servers/web-apps/changedetection-io/default.nix index 9b1810fab8c39..428d3d3aae3aa 100644 --- a/pkgs/servers/web-apps/changedetection-io/default.nix +++ b/pkgs/servers/web-apps/changedetection-io/default.nix @@ -17,6 +17,7 @@ python3.pkgs.buildPythonApplication rec { postPatch = '' substituteInPlace requirements.txt \ + --replace "apprise~=1.3.0" "apprise" \ --replace "cryptography~=3.4" "cryptography" \ --replace "dnspython<2.3.0" "dnspython" \ --replace "pytest ~=6.2" "" \ diff --git a/pkgs/servers/web-apps/galene/default.nix b/pkgs/servers/web-apps/galene/default.nix index 4863eb9331913..5e402bde05dce 100644 --- a/pkgs/servers/web-apps/galene/default.nix +++ b/pkgs/servers/web-apps/galene/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "galene"; - version = "0.7.0"; + version = "0.7.1"; src = fetchFromGitHub { owner = "jech"; repo = "galene"; rev = "galene-${version}"; - hash = "sha256-P1KW9JUHzH/aK3wehVMSVJcUmMqDEGc8zVg8P6F828s="; + hash = "sha256-dqve8ZQgJZYVyB43Dk2y966sn3zC2xtD2/jMFtcUj24="; }; - vendorSha256 = "sha256-+itNqxEy0S2g5UGpUIthJE2ILQzToISref/8F4zTmYg="; + vendorHash = "sha256-+itNqxEy0S2g5UGpUIthJE2ILQzToISref/8F4zTmYg="; ldflags = [ "-s" "-w" ]; preCheck = "export TZ=UTC"; diff --git a/pkgs/servers/web-apps/jitsi-meet/default.nix b/pkgs/servers/web-apps/jitsi-meet/default.nix index c67a639b9d8b7..f3ed321714d1b 100644 --- a/pkgs/servers/web-apps/jitsi-meet/default.nix +++ b/pkgs/servers/web-apps/jitsi-meet/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "jitsi-meet"; - version = "1.0.6943"; + version = "1.0.7235"; src = fetchurl { url = "https://download.jitsi.org/jitsi-meet/src/jitsi-meet-${version}.tar.bz2"; - sha256 = "4swWsCo6PmMzvSVY6vS5n2HH8o6pU+Ak37ng18BLqIk="; + sha256 = "OlAInpGl6I5rKgIsO3nXUQfksU326lsSDdiZdCYM3NU="; }; dontBuild = true; diff --git a/pkgs/servers/web-apps/livebook/default.nix b/pkgs/servers/web-apps/livebook/default.nix new file mode 100644 index 0000000000000..44257acd56c9f --- /dev/null +++ b/pkgs/servers/web-apps/livebook/default.nix @@ -0,0 +1,42 @@ +{ lib, beamPackages, makeWrapper, rebar3, elixir, erlang, fetchFromGitHub }: +beamPackages.mixRelease rec { + pname = "livebook"; + version = "0.9.2"; + + inherit elixir; + + buildInputs = [ erlang ]; + + nativeBuildInputs = [ makeWrapper ]; + + src = fetchFromGitHub { + owner = "livebook-dev"; + repo = "livebook"; + rev = "v${version}"; + hash = "sha256-khC3gtRvywgAY6qHslZgAV3kmziJgKhdCB8CDg/HkIU="; + }; + + mixFodDeps = beamPackages.fetchMixDeps { + pname = "mix-deps-${pname}"; + inherit src version; + hash = "sha256-rwWGs4fGeuyV6BBFgCyyDwKf/YLgs1wY0xnHYy8iioE="; + }; + + installPhase = '' + mix escript.build + mkdir -p $out/bin + mv ./livebook $out/bin + + wrapProgram $out/bin/livebook \ + --prefix PATH : ${lib.makeBinPath [ elixir ]} \ + --set MIX_REBAR3 ${rebar3}/bin/rebar3 + ''; + + meta = with lib; { + license = licenses.asl20; + homepage = "https://livebook.dev/"; + description = "Automate code & data workflows with interactive Elixir notebooks"; + maintainers = with maintainers; [ munksgaard ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/servers/web-apps/plausible/default.nix b/pkgs/servers/web-apps/plausible/default.nix index 43001649b07ed..d890e571d97b9 100644 --- a/pkgs/servers/web-apps/plausible/default.nix +++ b/pkgs/servers/web-apps/plausible/default.nix @@ -25,7 +25,7 @@ let mixFodDeps = beamPackages.fetchMixDeps { pname = "${pname}-deps"; inherit src version; - sha256 = "1ikcskp4gvvdprl65x1spijdc8dz6klnrnkvgy2jbk0b3d7yn1v5"; + hash = "sha256-ZQfrTxsLzCWFf3vabOk0vyHWZLw69GJovm3vR+7UbMY="; }; yarnDeps = mkYarnModules { diff --git a/pkgs/servers/windmill/Cargo.lock b/pkgs/servers/windmill/Cargo.lock new file mode 100644 index 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"registry+https://github.com/rust-lang/crates.io-index" +checksum = "20cc960326ece64f010d2d2107537f26dc589a6573a316bd5b1dba685fa5fde4" +dependencies = [ + "zstd-safe", +] + +[[package]] +name = "zstd-safe" +version = "5.0.2+zstd.1.5.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "1d2a5585e04f9eea4b2a3d1eca508c4dee9592a89ef6f450c11719da0726f4db" +dependencies = [ + "libc", + "zstd-sys", +] + +[[package]] +name = "zstd-sys" +version = "2.0.8+zstd.1.5.5" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "5556e6ee25d32df2586c098bbfa278803692a20d0ab9565e049480d52707ec8c" +dependencies = [ + "cc", + "libc", + "pkg-config", +] diff --git a/pkgs/servers/windmill/default.nix b/pkgs/servers/windmill/default.nix new file mode 100644 index 0000000000000..db154ec8ffba9 --- /dev/null +++ b/pkgs/servers/windmill/default.nix @@ -0,0 +1,143 @@ +{ lib +, rustPlatform +, fetchFromGitHub +, buildNpmPackage +, bash +, cairo +, deno +, fetchurl +, go +, lld +, makeWrapper +, nsjail +, openssl +, pango +, pixman +, pkg-config +, python3 +, rust +, rustfmt +, stdenv +, swagger-cli +}: + +let + pname = "windmill"; + version = "1.100.1"; + + fullSrc = fetchFromGitHub { + owner = "windmill-labs"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-o9obIvtFRNGfyOWmAQVLfAmLhwtJVHZWNxGaG7lbbC8="; + }; + + pythonEnv = python3.withPackages (ps: [ ps.pip-tools ]); + + frontend-build = buildNpmPackage { + inherit version; + + pname = "windmill-ui"; + src = fullSrc; + + sourceRoot = "source/frontend"; + + npmDepsHash = "sha256-nRx/UQ7GU1iwhddTotCTG08RoOmdbP66zGKYsEp9XOE="; + + preBuild = '' + npm run generate-backend-client + ''; + + buildInputs = [ pixman cairo pango ]; + nativeBuildInputs = [ python3 pkg-config ]; + + installPhase = '' + mkdir -p $out/share + mv build $out/share/windmill-frontend + ''; + }; +in +rustPlatform.buildRustPackage { + inherit pname version; + src = "${fullSrc}/backend"; + + SQLX_OFFLINE = "true"; + RUSTY_V8_ARCHIVE = + let + arch = rust.toRustTarget stdenv.hostPlatform; + fetch_librusty_v8 = args: + fetchurl { + name = "librusty_v8-${args.version}"; + url = "https://github.com/denoland/rusty_v8/releases/download/v${args.version}/librusty_v8_release_${arch}.a"; + sha256 = args.shas.${stdenv.hostPlatform.system} or (throw "Unsupported platform ${stdenv.hostPlatform.system}"); + meta = { inherit (args) version; }; + }; + in + fetch_librusty_v8 { + version = "0.71.0"; + shas = { + x86_64-linux = "sha256-52usT7MsLme3o3tjxcRJ0U3iX0fKtnvEvyKJeuL1Bvc="; + aarch64-linux = "sha256-E7CjpBO1cV5wFtLTIPPltGAyX1OEPjfhnVUQ4u3Mzxs="; + x86_64-darwin = "sha256-+Vj0SgvenrCuHPSYKFoxXTyfWDFbnUgHtWibNnXwbVk="; + aarch64-darwin = "sha256-p7BaC2nkZ+BGRPSXogpHshBblDe3ZDMGV93gA4sqpUc="; + }; + }; + + cargoLock = { + lockFile = ./Cargo.lock; + outputHashes = { + "progenitor-0.3.0" = "sha256-EPiAeAKCYBHiISGdXyuqlX/+Xp1feQmniLzt/FIDiLw="; + "typify-0.0.12" = "sha256-LfFUhr40jKQNO6be2RWend3mbZ/b6i2eljGLx0UTunY="; + }; + }; + + patches = [ + ./swagger-cli.patch + ./run.go.config.proto.patch + ./run.python3.config.proto.patch + ./run.bash.config.proto.patch + ]; + + postPatch = '' + substituteInPlace windmill-worker/src/worker.rs \ + --replace '"/bin/bash"' '"${bash}/bin/bash"' + ''; + + buildInputs = [ openssl rustfmt lld ]; + + nativeBuildInputs = [ pkg-config makeWrapper swagger-cli ]; + + preBuild = '' + pushd .. + + mkdir -p frontend/build + + cp -R ${frontend-build}/share/windmill-frontend/* frontend/build + cp ${fullSrc}/openflow.openapi.yaml . + + popd + ''; + + # needs a postgres database running + doCheck = false; + + postFixup = '' + patchelf --set-rpath ${lib.makeLibraryPath [openssl]} $out/bin/windmill + + wrapProgram "$out/bin/windmill" \ + --prefix PATH : ${lib.makeBinPath [go pythonEnv deno nsjail bash]} \ + --set PYTHON_PATH "${pythonEnv}/bin/python3" \ + --set GO_PATH "${go}/bin/go" \ + --set DENO_PATH "${deno}/bin/deno" \ + --set NSJAIL_PATH "${nsjail}/bin/nsjail" + ''; + + meta = with lib; { + description = "Open-source web IDE, scalable runtime and platform for serverless, workflows and UIs"; + homepage = "https://windmill.dev"; + license = licenses.agpl3; + maintainers = with maintainers; [ dit7ya ]; + # limited by librusty_v8 + platforms = [ "x86_64-linux" "aarch64-linux" "x86_64-darwin" "aarch64-darwin" ]; + }; +} diff --git a/pkgs/servers/windmill/run.bash.config.proto.patch b/pkgs/servers/windmill/run.bash.config.proto.patch new file mode 100644 index 0000000000000..874fe0607ee70 --- /dev/null +++ b/pkgs/servers/windmill/run.bash.config.proto.patch @@ -0,0 +1,41 @@ +diff --git a/windmill-worker/nsjail/run.bash.config.proto b/backend/windmill-worker/nsjail/run.bash.config.proto +index e93e6b45..bbedb165 100644 +--- a/windmill-worker/nsjail/run.bash.config.proto ++++ b/windmill-worker/nsjail/run.bash.config.proto +@@ -18,6 +18,12 @@ clone_newuser: {CLONE_NEWUSER} + keep_caps: false + keep_env: true + ++mount { ++ src: "/nix/store" ++ dst: "/nix/store" ++ is_bind: true ++} ++ + mount { + src: "/bin" + dst: "/bin" +@@ -25,6 +31,7 @@ mount { + } + + mount { ++ mandatory: false + src: "/lib" + dst: "/lib" + is_bind: true +@@ -32,6 +39,7 @@ mount { + + + mount { ++ mandatory: false + src: "/lib64" + dst: "/lib64" + is_bind: true +@@ -39,6 +47,7 @@ mount { + + + mount { ++ mandatory: false + src: "/usr" + dst: "/usr" + is_bind: true diff --git a/pkgs/servers/windmill/run.go.config.proto.patch b/pkgs/servers/windmill/run.go.config.proto.patch new file mode 100644 index 0000000000000..a5e3b68b07d7c --- /dev/null +++ b/pkgs/servers/windmill/run.go.config.proto.patch @@ -0,0 +1,34 @@ +diff --git a/windmill-worker/nsjail/run.go.config.proto b/windmill-worker/nsjail/run.go.config.proto +index 3af548d1..39ff4da7 100644 +--- a/windmill-worker/nsjail/run.go.config.proto ++++ b/windmill-worker/nsjail/run.go.config.proto +@@ -25,6 +25,13 @@ mount { + } + + mount { ++ src: "/nix/store" ++ dst: "/nix/store" ++ is_bind: true ++} ++ ++mount { ++ mandatory: false + src: "/lib" + dst: "/lib" + is_bind: true +@@ -32,6 +39,7 @@ mount { + + + mount { ++ mandatory: false + src: "/lib64" + dst: "/lib64" + is_bind: true +@@ -39,6 +47,7 @@ mount { + + + mount { ++ mandatory: false + src: "/usr" + dst: "/usr" + is_bind: true diff --git a/pkgs/servers/windmill/run.python3.config.proto.patch b/pkgs/servers/windmill/run.python3.config.proto.patch new file mode 100644 index 0000000000000..85e87d7b34330 --- /dev/null +++ b/pkgs/servers/windmill/run.python3.config.proto.patch @@ -0,0 +1,34 @@ +diff --git a/windmill-worker/nsjail/run.python3.config.proto b/windmill-worker/nsjail/run.python3.config.proto +index 9f106c23..9da2d2a8 100644 +--- a/windmill-worker/nsjail/run.python3.config.proto ++++ b/windmill-worker/nsjail/run.python3.config.proto +@@ -27,6 +27,13 @@ mount { + } + + mount { ++ src: "/nix/store" ++ dst: "/nix/store" ++ is_bind: true ++} ++ ++mount { ++ mandatory: false + src: "/lib" + dst: "/lib" + is_bind: true +@@ -34,6 +35,7 @@ mount { + + + mount { ++ mandatory: false + src: "/lib64" + dst: "/lib64" + is_bind: true +@@ -41,6 +43,7 @@ mount { + + + mount { ++ mandatory: false + src: "/usr" + dst: "/usr" + is_bind: true diff --git a/pkgs/servers/windmill/swagger-cli.patch b/pkgs/servers/windmill/swagger-cli.patch new file mode 100644 index 0000000000000..61b92db48072c --- /dev/null +++ b/pkgs/servers/windmill/swagger-cli.patch @@ -0,0 +1,10 @@ +diff --git a/windmill-api-client/bundle.sh b/windmill-api-client/bundle.sh +index 0fe4b172..bd66b49f 100644 +--- a/windmill-api-client/bundle.sh ++++ b/windmill-api-client/bundle.sh +@@ -1,3 +1,3 @@ + #!/bin/sh + +-npx swagger-cli bundle ../windmill-api/openapi.yaml > bundled.json +\ No newline at end of file ++swagger-cli bundle ../windmill-api/openapi.yaml > bundled.json diff --git a/pkgs/servers/zigbee2mqtt/default.nix b/pkgs/servers/zigbee2mqtt/default.nix index 882f78948e410..ab2e77ea5daa4 100644 --- a/pkgs/servers/zigbee2mqtt/default.nix +++ b/pkgs/servers/zigbee2mqtt/default.nix @@ -8,16 +8,16 @@ buildNpmPackage rec { pname = "zigbee2mqtt"; - version = "1.30.4"; + version = "1.31.0"; src = fetchFromGitHub { owner = "Koenkk"; repo = "zigbee2mqtt"; rev = version; - hash = "sha256-jS5O52frZY+OVLtMZkjZQskKuHs5T8zKTwjGKh77EAo="; + hash = "sha256-9GCpHd8MHpL2XF0uNHVTznsdLDnQAplnZmNCNxckd74="; }; - npmDepsHash = "sha256-71BbMBt0vXsuL8senZ7IvT3Y3OtvewQtWk1bzKUBtjI="; + npmDepsHash = "sha256-iONKkA0J1LFPbCi12Q1kxLIS2GBxKY7XvHOZIYWpsd8="; nativeBuildInputs = [ python3 diff --git a/pkgs/shells/powershell/default.nix b/pkgs/shells/powershell/default.nix index 5dbd8eb4f22e9..2f7bc15c1b3c0 100644 --- a/pkgs/shells/powershell/default.nix +++ b/pkgs/shells/powershell/default.nix @@ -1,5 +1,5 @@ -{ stdenv, lib, autoPatchelfHook, fetchzip, libunwind, libuuid, icu, curl -, darwin, makeWrapper, less, openssl_1_1, pam, lttng-ust }: +{ stdenv, lib, autoPatchelfHook, fetchurl, libunwind, libuuid, icu, curl +, darwin, makeWrapper, less, openssl, pam, lttng-ust }: let archString = if stdenv.isAarch64 then "arm64" else if stdenv.isx86_64 then "x64" @@ -7,27 +7,29 @@ let archString = if stdenv.isAarch64 then "arm64" platformString = if stdenv.isDarwin then "osx" else if stdenv.isLinux then "linux" else throw "unsupported platform"; - platformSha = if (stdenv.isDarwin && stdenv.isx86_64) then "sha256-JKB7Oy+3KWtVo1Aqmc7vZiO88FrF9+8N/tdGlvIQolM=" - else if (stdenv.isDarwin && stdenv.isAarch64) then "sha256-9UwB1tT2VaW+favw/KWPziFMSRWcw7AqeeZvbaGOBqc=" - else if (stdenv.isLinux && stdenv.isx86_64) then "sha256-kAcT9av4PFZfYqpS0XwKC0IiquUcVtN30Mq649PUnSM=" - else if (stdenv.isLinux && stdenv.isAarch64) then "sha256-3Lm9WYVcfkEVfji/h52VqFy1Jo1AiSQ22JhEGiCPzzM=" - else throw "unsupported platform"; + platformHash = { + x86_64-darwin = "sha256-FX3OyVzwU+Ms2tgjpZ4dPdjeJx2H5541dQZAjhI3n1U="; + aarch64-darwin = "sha256-Dg7FRF5inRnzP6tjDhIgHTJ1J2EQXnegqimZPK574WQ="; + x86_64-linux = "sha256-6F1VROE6kk+LLEpdwtQ6vkbkZjP4no0TjTnAqurLmXY="; + aarch64-linux = "sha256-NO4E2TOUIYyUFJmi3zKJzOyP0/rTPTZgJZcebVNkSfk="; + }.${stdenv.hostPlatform.system} or (throw "unsupported platform"); platformLdLibraryPath = if stdenv.isDarwin then "DYLD_FALLBACK_LIBRARY_PATH" else if stdenv.isLinux then "LD_LIBRARY_PATH" else throw "unsupported platform"; - libraries = [ libunwind libuuid icu curl openssl_1_1 ] ++ + libraries = [ libunwind libuuid icu curl openssl ] ++ (if stdenv.isLinux then [ pam lttng-ust ] else [ darwin.Libsystem ]); in stdenv.mkDerivation rec { pname = "powershell"; - version = "7.3.2"; + version = "7.3.4"; - src = fetchzip { + src = fetchurl { url = "https://github.com/PowerShell/PowerShell/releases/download/v${version}/powershell-${version}-${platformString}-${archString}.tar.gz"; - sha256 = platformSha; - stripRoot = false; + hash = platformHash; }; + sourceRoot = "."; + strictDeps = true; buildInputs = [ less ] ++ libraries; nativeBuildInputs = [ makeWrapper ] @@ -42,17 +44,13 @@ stdenv.mkDerivation rec { cp -r * $pslibs - rm -f $pslibs/libcrypto${ext}.1.0.0 - rm -f $pslibs/libssl${ext}.1.0.0 - # At least the 7.1.4-osx package does not have the executable bit set. chmod a+x $pslibs/pwsh - ls $pslibs - '' + lib.optionalString (!stdenv.isDarwin && !stdenv.isAarch64) '' - patchelf --replace-needed libcrypto${ext}.1.0.0 libcrypto${ext}.1.1 $pslibs/libmi.so - patchelf --replace-needed libssl${ext}.1.0.0 libssl${ext}.1.1 $pslibs/libmi.so - '' + lib.optionalString (!stdenv.isDarwin) '' + '' + lib.optionalString (stdenv.isLinux && stdenv.isx86_64) '' + patchelf --replace-needed libcrypto${ext}.1.0.0 libcrypto${ext} $pslibs/libmi.so + patchelf --replace-needed libssl${ext}.1.0.0 libssl${ext} $pslibs/libmi.so + '' + lib.optionalString stdenv.isLinux '' patchelf --replace-needed liblttng-ust${ext}.0 liblttng-ust${ext}.1 $pslibs/libcoreclrtraceptprovider.so '' + '' diff --git a/pkgs/shells/powershell/getHashes.sh b/pkgs/shells/powershell/getHashes.sh index 727eabb3de89b..785ab264ebccc 100755 --- a/pkgs/shells/powershell/getHashes.sh +++ b/pkgs/shells/powershell/getHashes.sh @@ -1,5 +1,5 @@ #!/usr/bin/env nix-shell -#!nix-shell -i bash -p bash wget coreutils gnutar nix +#!nix-shell -i bash -p bash wget coreutils nix version=$1 if [[ -z $version ]] @@ -11,9 +11,8 @@ fi allOutput="" dlDest=$(mktemp) -exDest=$(mktemp -d) -trap 'rm $dlDest; rm -r $exDest' EXIT +trap 'rm $dlDest' EXIT for plat in osx linux; do for arch in x64 arm64; do @@ -21,18 +20,13 @@ for plat in osx linux; do URL="https://github.com/PowerShell/PowerShell/releases/download/v$version/powershell-$version-$plat-$arch.tar.gz" wget $URL -O $dlDest >&2 - tar -xzf $dlDest -C $exDest >&2 - - hash=$(nix hash path $exDest) + hash=$(nix hash file $dlDest) allOutput+=" variant: $plat $arch hash: $hash " - rm -r $exDest - mkdir $exDest - done done diff --git a/pkgs/shells/yash/default.nix b/pkgs/shells/yash/default.nix index fb9f8e17b8555..6af39debf5650 100644 --- a/pkgs/shells/yash/default.nix +++ b/pkgs/shells/yash/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "yash"; - version = "2.53"; + version = "2.54"; src = fetchurl { url = "https://osdn.net/dl/yash/yash-${version}.tar.xz"; - hash = "sha256-5DDuhF39dxHE+GTVGN+H3Xi0BWAyfElPWczEcxWFMF0="; + hash = "sha256-RKCsHM98Os7PvqAn2MDJMPE6goBlvjGAVc4RMBU5GDk="; }; strictDeps = true; diff --git a/pkgs/shells/zsh/antidote/default.nix b/pkgs/shells/zsh/antidote/default.nix new file mode 100644 index 0000000000000..2e5fb8aa0f0e2 --- /dev/null +++ b/pkgs/shells/zsh/antidote/default.nix @@ -0,0 +1,33 @@ +{ lib, stdenv, fetchFromGitHub }: + +stdenv.mkDerivation (finalAttrs: { + version = "1.8.6"; + pname = "antidote"; + + src = fetchFromGitHub { + owner = "mattmc3"; + repo = "antidote"; + rev = "v${finalAttrs.version}"; + hash = "sha256-CcWEXvz1TB6LFu9qvkVB1LJsa68grK16VqjUTiuVG/c="; + }; + + dontPatch = true; + dontBuild = true; + dontConfigure = true; + dontFixup = true; + + installPhase = '' + runHook preInstall + install -D antidote --target-directory=$out/share/antidote + install -D antidote.zsh --target-directory=$out/share/antidote + install -D functions/* --target-directory=$out/share/antidote/functions + runHook postInstall + ''; + + meta = { + description = "A zsh plugin manager made from the ground up thinking about performance"; + homepage = "https://getantidote.github.io/"; + license = lib.licenses.mit; + maintainers = [ lib.maintainers.hitsmaxft ]; + }; +}) diff --git a/pkgs/shells/zsh/zinit/default.nix b/pkgs/shells/zsh/zinit/default.nix index ca8b7ea2e46ad..43fe2dc7d9fdd 100644 --- a/pkgs/shells/zsh/zinit/default.nix +++ b/pkgs/shells/zsh/zinit/default.nix @@ -2,12 +2,12 @@ stdenvNoCC.mkDerivation rec { pname = "zinit"; - version = "3.7"; + version = "3.11.0"; src = fetchFromGitHub { owner = "zdharma-continuum"; repo = pname; rev = "v${version}"; - hash = "sha256-B+cTGz+U8MR22l6xXdRAAjDr+ulCk+CJ9GllFMK0axE="; + hash = "sha256-Gps7s26qqEjQPDhhSJr9u5SuRNRJnmayKfw45Ygjcd8="; }; # adapted from https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=zsh-zplugin-git dontBuild = true; @@ -20,9 +20,9 @@ stdenvNoCC.mkDerivation rec { # Zplugin's source files install -dm0755 "$outdir" - # Installing also backward compatibility layer - install -m0644 z{plugin,init}{,-side,-install,-autoload}.zsh "$outdir" - install -m0755 git-process-output.zsh "$outdir" + # Installing backward compatibility layer + install -m0644 zinit{,-side,-install,-autoload}.zsh "$outdir" + install -m0755 share/git-process-output.zsh "$outdir" # Zplugin autocompletion installShellCompletion --zsh _zinit diff --git a/pkgs/shells/zsh/zsh-forgit/default.nix b/pkgs/shells/zsh/zsh-forgit/default.nix index 9957530fd901b..0b48a16b537d7 100644 --- a/pkgs/shells/zsh/zsh-forgit/default.nix +++ b/pkgs/shells/zsh/zsh-forgit/default.nix @@ -13,13 +13,13 @@ stdenv.mkDerivation rec { pname = "zsh-forgit"; - version = "23.05.0"; + version = "23.06.0"; src = fetchFromGitHub { owner = "wfxr"; repo = "forgit"; rev = version; - sha256 = "sha256-oBPN8ehz00cDIs6mmGfCBzuDQMLG5z3G6KetJ1FK7e8="; + sha256 = "sha256-HxdTRv4OFf7Bh3FnTB7FMjhizCLH5DbuOHzQq2SYfAE="; }; strictDeps = true; diff --git a/pkgs/stdenv/darwin/default.nix b/pkgs/stdenv/darwin/default.nix index ffe99da869225..780717db56b88 100644 --- a/pkgs/stdenv/darwin/default.nix +++ b/pkgs/stdenv/darwin/default.nix @@ -487,7 +487,7 @@ rec { nghttp2.lib coreutils gnugrep - pcre.out + gnugrep.pcre2.out gmp libiconv brotli.lib @@ -563,7 +563,7 @@ rec { nghttp2.lib coreutils gnugrep - pcre.out + gnugrep.pcre2.out gmp libiconv brotli.lib @@ -587,8 +587,9 @@ rec { persistent = self: super: with prevStage; { inherit gnumake gzip gnused bzip2 ed xz patch bash python3 - ncurses libffi zlib gmp pcre gnugrep cmake + ncurses libffi zlib gmp gnugrep cmake coreutils findutils diffutils patchutils ninja libxml2; + inherit (gnugrep) pcre2; # Hack to make sure we don't link ncurses in bootstrap tools. The proper # solution is to avoid passing -L/nix-store/...-bootstrap-tools/lib, @@ -643,8 +644,9 @@ rec { persistent = self: super: with prevStage; { inherit gnumake gzip gnused bzip2 gawk ed xz patch bash - ncurses libffi zlib gmp pcre gnugrep + ncurses libffi zlib gmp gnugrep coreutils findutils diffutils patchutils pbzx; + inherit (gnugrep) pcre2; darwin = super.darwin.overrideScope (_: _: { inherit (darwin) dyld ICU Libsystem Csu libiconv rewrite-tbd; @@ -734,7 +736,7 @@ rec { gawk gnugrep patch - pcre.out + gnugrep.pcre2.out gettext binutils.bintools binutils.bintools.lib diff --git a/pkgs/stdenv/darwin/make-bootstrap-tools.nix b/pkgs/stdenv/darwin/make-bootstrap-tools.nix index 5433e7afecf9f..9c580447a6f43 100644 --- a/pkgs/stdenv/darwin/make-bootstrap-tools.nix +++ b/pkgs/stdenv/darwin/make-bootstrap-tools.nix @@ -54,7 +54,7 @@ in rec { chmod -R u+w $out/include cp -rL ${darwin.ICU}/include* $out/include cp -rL ${libiconv}/include/* $out/include - cp -rL ${lib.getDev gnugrep.pcre}/include/* $out/include + cp -rL ${lib.getDev gnugrep.pcre2}/include/* $out/include mv $out/include $out/include-Libsystem # Copy coreutils, bash, etc. @@ -86,7 +86,7 @@ in rec { cp -d ${libssh2.out}/lib/libssh*.dylib $out/lib cp -d ${lib.getLib openssl}/lib/*.dylib $out/lib - cp -d ${gnugrep.pcre.out}/lib/libpcre*.dylib $out/lib + cp -d ${gnugrep.pcre2.out}/lib/libpcre2*.dylib $out/lib cp -d ${lib.getLib libiconv}/lib/lib*.dylib $out/lib cp -d ${lib.getLib gettext}/lib/libintl*.dylib $out/lib chmod +x $out/lib/libintl*.dylib diff --git a/pkgs/stdenv/generic/setup.sh b/pkgs/stdenv/generic/setup.sh index 734abb890c24f..1f596ada5a0b0 100644 --- a/pkgs/stdenv/generic/setup.sh +++ b/pkgs/stdenv/generic/setup.sh @@ -29,13 +29,23 @@ if [ -n "$__structuredAttrs" ]; then export "$outputName=${outputs[$outputName]}" done + # Before Nix 2.4, $NIX_ATTRS_*_FILE was named differently: + # https://github.com/NixOS/nix/commit/27ce722 + if [[ -n "${ATTRS_JSON_FILE:-}" ]]; then + export NIX_ATTRS_JSON_FILE="$ATTRS_JSON_FILE" + fi + + if [[ -n "${ATTRS_SH_FILE:-}" ]]; then + export NIX_ATTRS_SH_FILE="$ATTRS_SH_FILE" + fi + # $NIX_ATTRS_JSON_FILE pointed to the wrong location in sandbox # https://github.com/NixOS/nix/issues/6736; please keep around until the # fix reaches *every patch version* that's >= lib/minver.nix - if ! [[ -e "$NIX_ATTRS_JSON_FILE" ]]; then + if ! [[ -e "${NIX_ATTRS_JSON_FILE:-}" ]]; then export NIX_ATTRS_JSON_FILE="$NIX_BUILD_TOP/.attrs.json" fi - if ! [[ -e "$NIX_ATTRS_SH_FILE" ]]; then + if ! [[ -e "${NIX_ATTRS_SH_FILE:-}" ]]; then export NIX_ATTRS_SH_FILE="$NIX_BUILD_TOP/.attrs.sh" fi else @@ -311,12 +321,6 @@ _accumFlagsArray() { _addRpathPrefix() { if [ "${NIX_NO_SELF_RPATH:-0}" != 1 ]; then export NIX_LDFLAGS="-rpath $1/lib ${NIX_LDFLAGS-}" - if [ -n "${NIX_LIB64_IN_SELF_RPATH:-}" ]; then - export NIX_LDFLAGS="-rpath $1/lib64 ${NIX_LDFLAGS-}" - fi - if [ -n "${NIX_LIB32_IN_SELF_RPATH:-}" ]; then - export NIX_LDFLAGS="-rpath $1/lib32 ${NIX_LDFLAGS-}" - fi fi } diff --git a/pkgs/stdenv/linux/default.nix b/pkgs/stdenv/linux/default.nix index 6a743f60c9b2c..9cfe21e3640d4 100644 --- a/pkgs/stdenv/linux/default.nix +++ b/pkgs/stdenv/linux/default.nix @@ -127,8 +127,6 @@ let '' export NIX_ENFORCE_PURITY="''${NIX_ENFORCE_PURITY-1}" export NIX_ENFORCE_NO_NATIVE="''${NIX_ENFORCE_NO_NATIVE-1}" - ${lib.optionalString (system == "x86_64-linux") "NIX_LIB64_IN_SELF_RPATH=1"} - ${lib.optionalString (system == "mipsel-linux") "NIX_LIB32_IN_SELF_RPATH=1"} ''; @@ -639,7 +637,7 @@ in ] # Library dependencies ++ map getLib ( - [ attr acl zlib pcre libidn2 libunistring ] + [ attr acl zlib gnugrep.pcre2 libidn2 libunistring ] ++ lib.optional (gawk.libsigsegv != null) gawk.libsigsegv ) # More complicated cases @@ -658,7 +656,8 @@ in inherit (prevStage) gzip bzip2 xz bash coreutils diffutils findutils gawk gnused gnutar gnugrep gnupatch patchelf - attr acl zlib pcre libunistring; + attr acl zlib libunistring; + inherit (prevStage.gnugrep) pcre2; ${localSystem.libc} = getLibc prevStage; # Hack: avoid libidn2.{bin,dev} referencing bootstrap tools. There's a logical cycle. diff --git a/pkgs/stdenv/linux/make-bootstrap-tools.nix b/pkgs/stdenv/linux/make-bootstrap-tools.nix index 06750e5c7138e..d6c4da0ab2bee 100644 --- a/pkgs/stdenv/linux/make-bootstrap-tools.nix +++ b/pkgs/stdenv/linux/make-bootstrap-tools.nix @@ -130,7 +130,7 @@ in with pkgs; rec { cp -d ${patch}/bin/* $out/bin cp ${patchelf}/bin/* $out/bin - cp -d ${gnugrep.pcre.out}/lib/libpcre*.so* $out/lib # needed by grep + cp -d ${gnugrep.pcre2.out}/lib/libpcre2*.so* $out/lib # needed by grep # Copy what we need of GCC. cp -d ${bootGCC.out}/bin/gcc $out/bin diff --git a/pkgs/test/haskell/default.nix b/pkgs/test/haskell/default.nix index 337d2811c6550..86764380ecc30 100644 --- a/pkgs/test/haskell/default.nix +++ b/pkgs/test/haskell/default.nix @@ -6,4 +6,5 @@ lib.recurseIntoAttrs { documentationTarball = callPackage ./documentationTarball { }; setBuildTarget = callPackage ./setBuildTarget { }; writers = callPackage ./writers { }; + incremental = callPackage ./incremental { }; } diff --git a/pkgs/test/haskell/incremental/default.nix b/pkgs/test/haskell/incremental/default.nix new file mode 100644 index 0000000000000..4509939ba4f42 --- /dev/null +++ b/pkgs/test/haskell/incremental/default.nix @@ -0,0 +1,35 @@ +# Demonstration of incremental builds for Haskell. Useful for speeding up CI. +# +# See: https://www.haskellforall.com/2022/12/nixpkgs-support-for-incremental-haskell.html +# See: https://felixspringer.xyz/homepage/blog/incrementalHaskellBuildsWithNix + +{ haskell, lib }: + +let + inherit (haskell.lib.compose) overrideCabal; + + # Incremental builds work with GHC >=9.4. + temporary = haskell.packages.ghc944.temporary; + + # This will do a full build of `temporary`, while writing the intermediate build products + # (compiled modules, etc.) to the `intermediates` output. + temporary-full-build-with-incremental-output = overrideCabal (drv: { + doInstallIntermediates = true; + enableSeparateIntermediatesOutput = true; + }) temporary; + + # This will do an incremental build of `temporary` by copying the previously + # compiled modules and intermediate build products into the source tree + # before running the build. + # + # GHC will then naturally pick up and reuse these products, making this build + # complete much more quickly than the previous one. + temporary-incremental-build = overrideCabal (drv: { + previousIntermediates = temporary-full-build-with-incremental-output.intermediates; + }) temporary; +in + temporary-incremental-build.overrideAttrs (old: { + meta = { + maintainers = lib.teams.mercury.members; + }; + }) diff --git a/pkgs/tools/X11/wpgtk/default.nix b/pkgs/tools/X11/wpgtk/default.nix index 1bdc5b0f49ba5..1bfdd674aa00c 100644 --- a/pkgs/tools/X11/wpgtk/default.nix +++ b/pkgs/tools/X11/wpgtk/default.nix @@ -3,13 +3,13 @@ python3Packages.buildPythonApplication rec { pname = "wpgtk"; - version = "6.5.5"; + version = "6.5.7"; src = fetchFromGitHub { owner = "deviantfero"; repo = "wpgtk"; rev = version; - sha256 = "sha256-g3flxQNiNta+uL4t21Lhpij8b5yB78SJLGaFpTcm9fE="; + sha256 = "sha256-rHNni0nDghc5kI1sWHAb5ODr4buBz65eUEB1qWpbTTs="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/X11/xdg-utils/default.nix b/pkgs/tools/X11/xdg-utils/default.nix index c3b1dd546fb72..49a8269b8d40b 100644 --- a/pkgs/tools/X11/xdg-utils/default.nix +++ b/pkgs/tools/X11/xdg-utils/default.nix @@ -22,14 +22,14 @@ in stdenv.mkDerivation rec { pname = "xdg-utils"; - version = "unstable-2020-10-21"; + version = "unstable-2022-11-06"; src = fetchFromGitLab { domain = "gitlab.freedesktop.org"; owner = "xdg"; repo = "xdg-utils"; - rev = "d11b33ec7f24cfb1546f6b459611d440013bdc72"; - sha256 = "sha256-8PtXfI8hRneEpnUvIV3M+6ACjlkx0w/NEiJFdGbbHnQ="; + rev = "8ae02631a9806da11b34cd6b274af02d28aee5da"; + sha256 = "sha256-WdnnAiPYbREny633FnBi5tD9hDuF8NCVVbUaAVIKTxM="; }; patches = lib.optionals withXdgOpenUsePortalPatch [ diff --git a/pkgs/tools/X11/xpra/default.nix b/pkgs/tools/X11/xpra/default.nix index f70f2efa0710f..c889c722dd6b1 100644 --- a/pkgs/tools/X11/xpra/default.nix +++ b/pkgs/tools/X11/xpra/default.nix @@ -69,11 +69,11 @@ let ''; in buildPythonApplication rec { pname = "xpra"; - version = "4.4.4"; + version = "4.4.5"; src = fetchurl { url = "https://xpra.org/src/${pname}-${version}.tar.xz"; - hash = "sha256-oPa9ECqCE9+PrcZufsHWYR6EHxTZVFJOMUlK2b0mwLE="; + hash = "sha256-o2vDPzZWgpEFe0yzNjwtuLPHO0GfWbSscKjvIfTi6Ro="; }; patches = [ @@ -211,6 +211,7 @@ in buildPythonApplication rec { homepage = "https://xpra.org/"; downloadPage = "https://xpra.org/src/"; description = "Persistent remote applications for X"; + changelog = "https://github.com/Xpra-org/xpra/releases/tag/v${version}"; platforms = platforms.linux; license = licenses.gpl2; maintainers = with maintainers; [ offline numinit mvnetbiz ]; diff --git a/pkgs/tools/admin/amazon-ecr-credential-helper/default.nix b/pkgs/tools/admin/amazon-ecr-credential-helper/default.nix index d0f6e8f56719f..e541d75c37394 100644 --- a/pkgs/tools/admin/amazon-ecr-credential-helper/default.nix +++ b/pkgs/tools/admin/amazon-ecr-credential-helper/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "amazon-ecr-credential-helper"; - version = "0.7.0"; + version = "0.7.1"; src = fetchFromGitHub { owner = "awslabs"; repo = "amazon-ecr-credential-helper"; rev = "v${version}"; - sha256 = "sha256-jkS3JAHgIci/5HrcM6a5LjGitl4SLHQNmUIMLWrkUUc="; + sha256 = "sha256-Q+YAfCsq4/PoSzYMFhLDAsAfxlU7XR/vouHo42/D2eM="; }; vendorHash = null; diff --git a/pkgs/tools/admin/balena-cli/default.nix b/pkgs/tools/admin/balena-cli/default.nix index fe45bcccf4e22..5f45527c3bccb 100644 --- a/pkgs/tools/admin/balena-cli/default.nix +++ b/pkgs/tools/admin/balena-cli/default.nix @@ -15,12 +15,12 @@ let }.${system} or throwSystem; sha256 = { - x86_64-linux = "sha256-DrPV1TSoWACk9331lYznLZbkPvx124XWrtCet4uSroo="; - x86_64-darwin = "sha256-UDovorRWOAEP8zugtd7iXmJe2YusH0ShBr8Hz4bc9Qk="; - aarch64-darwin = "sha256-UDovorRWOAEP8zugtd7iXmJe2YusH0ShBr8Hz4bc9Qk="; + x86_64-linux = "sha256-5AdMuVHYX41O+iUSUlbHLQkATY2sPb9e8y4pfmvj07U="; + x86_64-darwin = "sha256-5GX8dglvEgvWMnIG54G3jPxHUAKlS4E6aDMvvjYGidQ="; + aarch64-darwin = "sha256-5GX8dglvEgvWMnIG54G3jPxHUAKlS4E6aDMvvjYGidQ="; }.${system} or throwSystem; - version = "16.2.7"; + version = "16.5.0"; src = fetchzip { url = "https://github.com/balena-io/balena-cli/releases/download/v${version}/balena-cli-v${version}-${plat}-standalone.zip"; inherit sha256; diff --git a/pkgs/tools/admin/berglas/default.nix b/pkgs/tools/admin/berglas/default.nix index c6b8e4993088d..f9af2e94c0157 100644 --- a/pkgs/tools/admin/berglas/default.nix +++ b/pkgs/tools/admin/berglas/default.nix @@ -1,4 +1,4 @@ -{ lib, buildGoModule, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub, testers, berglas }: let skipTests = { @@ -27,19 +27,31 @@ in buildGoModule rec { pname = "berglas"; - version = "1.0.2"; + version = "1.0.3"; src = fetchFromGitHub { owner = "GoogleCloudPlatform"; repo = pname; rev = "v${version}"; - sha256 = "sha256-OMmvoUzdi5rie/YCkylSKjNm2ty2HnnAuFZrLAgJHZk="; + sha256 = "sha256-4hbRX0kKMWixcu5SWjrM5lVvhLMOaeBdG4GH5NVAh70="; }; - vendorHash = "sha256-WIbT1N7tRAt5vJO6j06fwUAaFxfAevRo0+r2wyy+feE="; + vendorHash = "sha256-qcFS07gma7GVxhdrYca0E6rcczNcZmU8JcjjcpEaxp0="; + + ldflags = [ + "-s" + "-w" + "-X=github.com/GoogleCloudPlatform/berglas/internal/version.Version=${version}" + ]; postPatch = skipTestsCommand; + passthru.tests = { + version = testers.testVersion { + package = berglas; + }; + }; + meta = with lib; { description = "A tool for managing secrets on Google Cloud"; homepage = "https://github.com/GoogleCloudPlatform/berglas"; diff --git a/pkgs/tools/admin/copilot-cli/default.nix b/pkgs/tools/admin/copilot-cli/default.nix index 0eb19679bdc40..b27aa9f593335 100644 --- a/pkgs/tools/admin/copilot-cli/default.nix +++ b/pkgs/tools/admin/copilot-cli/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "copilot-cli"; - version = "1.27.0"; + version = "1.28.0"; src = fetchFromGitHub { owner = "aws"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Py45QkivjwVNQqKX5/j4YUO+gpVYfXI7elD9YSlrmak="; + sha256 = "sha256-KrgPHdYR0kYwyNhO2EwIO00Xnjy0MmrzHb5LDmbrgB0="; }; - vendorHash = "sha256-ali7zvLLLB5kQCU9r2o/dO0g5CQxv/kVVz3iJ56fqYY="; + vendorHash = "sha256-1YOx7tqPJwCZlJSAG9o+STKRAIR72dptvTOpa9rRt3A="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/tools/admin/credhub-cli/default.nix b/pkgs/tools/admin/credhub-cli/default.nix index d7e2af079fd1b..c85116abaf784 100644 --- a/pkgs/tools/admin/credhub-cli/default.nix +++ b/pkgs/tools/admin/credhub-cli/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "credhub-cli"; - version = "2.9.15"; + version = "2.9.16"; src = fetchFromGitHub { owner = "cloudfoundry-incubator"; repo = "credhub-cli"; rev = version; - sha256 = "sha256-0cs2ChbhUHvjHOGVv/wazo8g5f5JWuDKHJkKLC6Qp4g="; + sha256 = "sha256-NfGS5kUfmv1djYMqB1HrNFgM2cBfW4EZHrkxhwmBWKQ="; }; # these tests require network access that we're not going to give them diff --git a/pkgs/tools/admin/eksctl/default.nix b/pkgs/tools/admin/eksctl/default.nix index f9889a29e412c..f05f3c7632d86 100644 --- a/pkgs/tools/admin/eksctl/default.nix +++ b/pkgs/tools/admin/eksctl/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "eksctl"; - version = "0.142.0"; + version = "0.143.0"; src = fetchFromGitHub { owner = "weaveworks"; repo = pname; rev = version; - hash = "sha256-C+VcAtMkltkJ+IRIhZg1VXWiAtj8N0sOoEutvkXC+No="; + hash = "sha256-FVZQooV1sygxubPZ/9CvWIEcDhDGIbreDPUBrtyIy60="; }; - vendorHash = "sha256-4u9TwtFDqr0wZ7/2pdSSofAO6qyN3mYHOk2UdU74fGI="; + vendorHash = "sha256-WJ7pTooO4/o0IR4Rio+EoN7oxmobG7GqT7aEUqusKI0="; doCheck = false; diff --git a/pkgs/tools/admin/exoscale-cli/default.nix b/pkgs/tools/admin/exoscale-cli/default.nix index d873d0a47f674..d339ecc48e004 100644 --- a/pkgs/tools/admin/exoscale-cli/default.nix +++ b/pkgs/tools/admin/exoscale-cli/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "exoscale-cli"; - version = "1.69.0"; + version = "1.70.0"; src = fetchFromGitHub { owner = "exoscale"; repo = "cli"; rev = "v${version}"; - sha256 = "sha256-TPsi03SKlcy6QJ91vtgpDwTD2YMfo2fPgKnbmkZG9NQ="; + sha256 = "sha256-PTgoCKhIQYt6FDMiHDdPqdyLR+wImGPYSshOT/WZz7U="; }; vendorHash = null; diff --git a/pkgs/tools/admin/granted/default.nix b/pkgs/tools/admin/granted/default.nix index c21965aa0bbbd..ed2bc901826df 100644 --- a/pkgs/tools/admin/granted/default.nix +++ b/pkgs/tools/admin/granted/default.nix @@ -9,16 +9,16 @@ buildGoModule rec { pname = "granted"; - version = "0.11.1"; + version = "0.13.0"; src = fetchFromGitHub { owner = "common-fate"; repo = pname; rev = "v${version}"; - sha256 = "sha256-m6cFAX8FMyv9H1IKm6meWu2yNEZz4g1Q+h2rRijYJsc="; + sha256 = "sha256-UoU2+RBR6vBLRx5gJsVUswoEtZ8chCn+bSv+k4SCGyU="; }; - vendorSha256 = "sha256-8BPntTgd7QqO2T3vyWXC1z5yE/ovg3D3iilnislqV30="; + vendorHash = "sha256-P7HeJUdVlqrTEMVXGlvcCr9ezEmqIw5AX/+xdcFQoH4="; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/admin/lego/default.nix b/pkgs/tools/admin/lego/default.nix index f7a5193100d7d..728f16a6351c0 100644 --- a/pkgs/tools/admin/lego/default.nix +++ b/pkgs/tools/admin/lego/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "lego"; - version = "4.11.0"; + version = "4.12.0"; src = fetchFromGitHub { owner = "go-acme"; repo = pname; rev = "v${version}"; - sha256 = "sha256-RotsWr/wUPAAzW9PrUH3DGx2J5beyD+s/PpAUH12gNI="; + sha256 = "sha256-uWs8P3oQS6DFuLmuj+Med0vEBjTv2jNbEkDB/cqyY7g="; }; - vendorHash = "sha256-6dfwAsCxEYksZXqSWYurAD44YfH4h5p5P1aYZENjHSs="; + vendorHash = "sha256-Pwtvv/qVX91yWx49IYdveVCySoVxekvHomfAzOdFj7w="; doCheck = false; diff --git a/pkgs/tools/admin/netplan/default.nix b/pkgs/tools/admin/netplan/default.nix index e4acc77b0bd7d..0e048d1468ed0 100644 --- a/pkgs/tools/admin/netplan/default.nix +++ b/pkgs/tools/admin/netplan/default.nix @@ -13,13 +13,13 @@ stdenv.mkDerivation rec { pname = "netplan"; - version = "0.106"; + version = "0.106.1"; src = fetchFromGitHub { owner = "canonical"; repo = "netplan"; rev = version; - hash = "sha256-oKHnhUEYdWutkkL8hbSX43+6qzlts1vqxrr/L42VztY="; + hash = "sha256-wQ4gd9+9YU92WGRMjSiF/zLCGxhaSl8s22pH1jr+Mm0="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/admin/oxidized/Gemfile b/pkgs/tools/admin/oxidized/Gemfile index bddfe1adee53e..6987f5d3da290 100644 --- a/pkgs/tools/admin/oxidized/Gemfile +++ b/pkgs/tools/admin/oxidized/Gemfile @@ -1,5 +1,11 @@ source 'https://rubygems.org' -gem 'oxidized', '0.26.3' +gem 'oxidized', '0.29.1' gem 'oxidized-web', '0.13.1' -gem 'oxidized-script', '0.6.0' + +# The version on rubygems is not up2date +gem 'oxidized-script', git: 'https://github.com/ytti/oxidized-script.git', ref: '988cded5d89f52e274afb545bd3e011e19d5d22d' + +# Fix for https://github.com/ytti/oxidized/issues/2769 +gem 'psych', '~> 3.3.2' + diff --git a/pkgs/tools/admin/oxidized/Gemfile.lock b/pkgs/tools/admin/oxidized/Gemfile.lock index 64bc02cafc3cb..062fecd2ad204 100644 --- a/pkgs/tools/admin/oxidized/Gemfile.lock +++ b/pkgs/tools/admin/oxidized/Gemfile.lock @@ -1,31 +1,39 @@ +GIT + remote: https://github.com/ytti/oxidized-script.git + revision: 988cded5d89f52e274afb545bd3e011e19d5d22d + ref: 988cded5d89f52e274afb545bd3e011e19d5d22d + specs: + oxidized-script (0.6.0) + oxidized (~> 0.28) + slop (~> 4.6) + GEM remote: https://rubygems.org/ specs: - asetus (0.3.0) - backports (3.14.0) - charlock_holmes (0.7.6) + asetus (0.4.0) + backports (3.24.1) + bcrypt_pbkdf (1.1.0) + charlock_holmes (0.7.7) + ed25519 (1.3.0) emk-sinatra-url-for (0.2.1) sinatra (>= 0.9.1.1) - ffi (1.10.0) - git (1.5.0) - haml (5.0.4) + ffi (1.15.5) + haml (5.2.2) temple (>= 0.8.0) tilt htmlentities (4.3.4) - json (2.2.0) - multi_json (1.13.1) - net-ssh (5.2.0) - net-telnet (0.1.1) - oxidized (0.26.3) + json (2.6.3) + multi_json (1.15.0) + net-ssh (7.1.0) + net-telnet (0.2.0) + oxidized (0.29.1) asetus (~> 0.1) - git (~> 1) - net-ssh (~> 5) - net-telnet (~> 0.1.1) - rugged (~> 0.21, >= 0.21.4) - slop (~> 3.5) - oxidized-script (0.6.0) - oxidized (~> 0.25) - slop (~> 3.5) + bcrypt_pbkdf (~> 1.0) + ed25519 (~> 1.2) + net-ssh (~> 7.1) + net-telnet (~> 0.2) + rugged (~> 1.6) + slop (~> 4.6) oxidized-web (0.13.1) charlock_holmes (~> 0.7.5) emk-sinatra-url-for (~> 0.2) @@ -38,16 +46,17 @@ GEM sass (~> 3.3) sinatra (~> 1.4, >= 1.4.6) sinatra-contrib (~> 1.4, >= 1.4.6) + psych (3.3.4) puma (3.11.4) - rack (1.6.11) + rack (1.6.13) rack-protection (1.5.5) rack rack-test (0.7.0) rack (>= 1.0, < 3) - rb-fsevent (0.10.3) - rb-inotify (0.10.0) + rb-fsevent (0.11.2) + rb-inotify (0.10.1) ffi (~> 1.0) - rugged (0.28.1) + rugged (1.6.3) sass (3.7.4) sass-listen (~> 4.0.0) sass-listen (4.0.0) @@ -64,17 +73,18 @@ GEM rack-test sinatra (~> 1.4.0) tilt (>= 1.3, < 3) - slop (3.6.0) - temple (0.8.1) - tilt (2.0.9) + slop (4.10.1) + temple (0.10.1) + tilt (2.1.0) PLATFORMS - ruby + x86_64-linux DEPENDENCIES - oxidized (= 0.26.3) - oxidized-script (= 0.6.0) + oxidized (= 0.29.1) + oxidized-script! oxidized-web (= 0.13.1) + psych (~> 3.3.2) BUNDLED WITH - 2.1.4 + 2.3.26 diff --git a/pkgs/tools/admin/oxidized/default.nix b/pkgs/tools/admin/oxidized/default.nix index 022b304a84593..db56ef894b385 100644 --- a/pkgs/tools/admin/oxidized/default.nix +++ b/pkgs/tools/admin/oxidized/default.nix @@ -6,7 +6,7 @@ bundlerApp { inherit ruby; - exes = [ "oxidized" "oxidized-web" "oxidized-script" ]; + exes = [ "oxidized" "oxs" ]; passthru.updateScript = bundlerUpdateScript "oxidized"; @@ -14,7 +14,7 @@ bundlerApp { description = "A network device configuration backup tool. It's a RANCID replacement!"; homepage = "https://github.com/ytti/oxidized"; license = licenses.asl20; - maintainers = with maintainers; [ willibutz nicknovitski ]; + maintainers = with maintainers; [ willibutz nicknovitski netali ]; platforms = platforms.linux; }; } diff --git a/pkgs/tools/admin/oxidized/gemset.nix b/pkgs/tools/admin/oxidized/gemset.nix index f6a3aaa678037..0f30723528854 100644 --- a/pkgs/tools/admin/oxidized/gemset.nix +++ b/pkgs/tools/admin/oxidized/gemset.nix @@ -4,61 +4,71 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1zkr8cbp8klanqmhzz7qmimzlxh6zmsy98zb3s75af34l7znq790"; + sha256 = "0li09rcpgc21ymfayvhnjwvfl10s75g8aj52973gk0gvygscrhah"; type = "gem"; }; - version = "0.3.0"; + version = "0.4.0"; }; backports = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "17j5pf0b69bkn043wi4xd530ky53jbbnljr4bsjzlm4k8bzlknfn"; + sha256 = "1f3zcy0q88rw3clk0r7bai7sp4r253lndf0qmdgczq1ykbm219w3"; type = "gem"; }; - version = "3.14.0"; + version = "3.24.1"; + }; + bcrypt_pbkdf = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0ndamfaivnkhc6hy0yqyk2gkwr6f3bz6216lh74hsiiyk3axz445"; + type = "gem"; + }; + version = "1.1.0"; }; charlock_holmes = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1nf1l31n10yaark2rrg5qzyzcx9w80681449s3j09qmnipsl8rl5"; + sha256 = "0hybw8jw9ryvz5zrki3gc9r88jqy373m6v46ynxsdzv1ysiyr40p"; type = "gem"; }; - version = "0.7.6"; + version = "0.7.7"; }; - emk-sinatra-url-for = { - dependencies = ["sinatra"]; + ed25519 = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0rd5b1lraklv0hblzdnmw2z3dragfg0qqk7wxbpn58f8y7jxzjgj"; + sha256 = "0zb2dr2ihb1qiknn5iaj1ha1w9p7lj9yq5waasndlfadz225ajji"; type = "gem"; }; - version = "0.2.1"; + version = "1.3.0"; }; - ffi = { + emk-sinatra-url-for = { + dependencies = ["sinatra"]; groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0j8pzj8raxbir5w5k6s7a042sb5k02pg0f8s4na1r5lan901j00p"; + sha256 = "0rd5b1lraklv0hblzdnmw2z3dragfg0qqk7wxbpn58f8y7jxzjgj"; type = "gem"; }; - version = "1.10.0"; + version = "0.2.1"; }; - git = { + ffi = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0bf83icwypi3p3pd97vlqbnp3hvf31ncd440m9kh9y7x6yk74wyh"; + sha256 = "1862ydmclzy1a0cjbvm8dz7847d9rch495ib0zb64y84d3xd4bkg"; type = "gem"; }; - version = "1.5.0"; + version = "1.15.5"; }; haml = { dependencies = ["temple" "tilt"]; @@ -66,10 +76,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1q0a9fvqh8kn6wm97fcks6qzbjd400bv8bx748w8v87m7p4klhac"; + sha256 = "035fgbfr20m08w4603ls2lwqbggr0vy71mijz0p68ib1am394xbf"; type = "gem"; }; - version = "5.0.4"; + version = "5.2.2"; }; htmlentities = { groups = ["default"]; @@ -86,60 +96,62 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0sx97bm9by389rbzv8r1f43h06xcz8vwi3h5jv074gvparql7lcx"; + sha256 = "0nalhin1gda4v8ybk6lq8f407cgfrj6qzn234yra4ipkmlbfmal6"; type = "gem"; }; - version = "2.2.0"; + version = "2.6.3"; }; multi_json = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1rl0qy4inf1mp8mybfk56dfga0mvx97zwpmq5xmiwl5r770171nv"; + sha256 = "0pb1g1y3dsiahavspyzkdy39j4q377009f6ix0bh1ag4nqw43l0z"; type = "gem"; }; - version = "1.13.1"; + version = "1.15.0"; }; net-ssh = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "101wd2px9lady54aqmkibvy4j62zk32w0rjz4vnigyg974fsga40"; + sha256 = "0yx0pb5fmziz92bw8qzbh8vf20lr56nd3s6q8h0gsgr307lki687"; type = "gem"; }; - version = "5.2.0"; + version = "7.1.0"; }; net-telnet = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "13qxznpwmc3hs51b76wqx2w29r158gzzh8719kv2gpi56844c8fx"; + sha256 = "16nkxc79nqm7fd6w1fba4kb98vpgwnyfnlwxarpdcgywz300fc15"; type = "gem"; }; - version = "0.1.1"; + version = "0.2.0"; }; oxidized = { - dependencies = ["asetus" "git" "net-ssh" "net-telnet" "rugged" "slop"]; + dependencies = ["asetus" "bcrypt_pbkdf" "ed25519" "net-ssh" "net-telnet" "rugged" "slop"]; groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "07hpxmdjkfpkc00ln3hhh5qkj0lyhcmgbi0jza2c8cnjyy9sc73x"; + sha256 = "1ww8iv89zvklnvq9cv2lb6wyb5y73hinzm6xgd21za4204aanlps"; type = "gem"; }; - version = "0.26.3"; + version = "0.29.1"; }; oxidized-script = { dependencies = ["oxidized" "slop"]; groups = ["default"]; platforms = []; source = { - remotes = ["https://rubygems.org"]; - sha256 = "15cxsyaz2mwd7jj63gfv3lzyqkvb3gz29wxfy7xyjdzkc19c7vk6"; - type = "gem"; + fetchSubmodules = false; + rev = "988cded5d89f52e274afb545bd3e011e19d5d22d"; + sha256 = "13vglj6w37xd6dqfn98xdan3kqbs460akj1rdr4bm7lsrpa281gf"; + type = "git"; + url = "https://github.com/ytti/oxidized-script.git"; }; version = "0.6.0"; }; @@ -154,6 +166,16 @@ }; version = "0.13.1"; }; + psych = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "186i2hc6sfvg4skhqf82kxaf4mb60g65fsif8w8vg1hc9mbyiaph"; + type = "gem"; + }; + version = "3.3.4"; + }; puma = { groups = ["default"]; platforms = []; @@ -169,10 +191,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f"; + sha256 = "0wr1f3g9rc9i8svfxa9cijajl1661d817s56b2w7rd572zwn0zi0"; type = "gem"; }; - version = "1.6.11"; + version = "1.6.13"; }; rack-protection = { dependencies = ["rack"]; @@ -201,10 +223,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1lm1k7wpz69jx7jrc92w3ggczkjyjbfziq5mg62vjnxmzs383xx8"; + sha256 = "1zmf31rnpm8553lqwibvv3kkx0v7majm1f341xbxc0bk5sbhp423"; type = "gem"; }; - version = "0.10.3"; + version = "0.11.2"; }; rb-inotify = { dependencies = ["ffi"]; @@ -212,20 +234,20 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1fs7hxm9g6ywv2yih83b879klhc4fs8i0p9166z795qmd77dk0a4"; + sha256 = "1jm76h8f8hji38z3ggf4bzi8vps6p7sagxn3ab57qc0xyga64005"; type = "gem"; }; - version = "0.10.0"; + version = "0.10.1"; }; rugged = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1yiszpz6y13vvgh3fss1l0ipp0zgsbbc8c28vynnpdyx1sy6krp6"; + sha256 = "016bawsahkhxx7p8azxirpl7y2y7i8a027pj8910gwf6ipg329in"; type = "gem"; }; - version = "0.28.1"; + version = "1.6.3"; }; sass = { dependencies = ["sass-listen"]; @@ -276,29 +298,29 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "00w8g3j7k7kl8ri2cf1m58ckxk8rn350gp4chfscmgv6pq1spk3n"; + sha256 = "1iyrjskgxyn8i1679qwkzns85p909aq77cgx2m4fs5ygzysj4hw4"; type = "gem"; }; - version = "3.6.0"; + version = "4.10.1"; }; temple = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "158d7ygbwcifqnvrph219p7m78yjdjazhykv5darbkms7bxm5y09"; + sha256 = "1jj8lny5hp8gm920k73r6xpb40j5mpiw1dcr8g5id4hxjggkw8by"; type = "gem"; }; - version = "0.8.1"; + version = "0.10.1"; }; tilt = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0ca4k0clwf0rkvy7726x4nxpjxkpv67w043i39saxgldxd97zmwz"; + sha256 = "1qmhi6d9przjzhsyk9g5pq2j75c656msh6xzprqd2mxgphf23jxs"; type = "gem"; }; - version = "2.0.9"; + version = "2.1.0"; }; } diff --git a/pkgs/tools/admin/pgadmin/default.nix b/pkgs/tools/admin/pgadmin/default.nix index e632015ad5dd3..152c9b72038fd 100644 --- a/pkgs/tools/admin/pgadmin/default.nix +++ b/pkgs/tools/admin/pgadmin/default.nix @@ -14,14 +14,14 @@ let pname = "pgadmin"; - version = "7.1"; + version = "7.2"; yarnSha256 = "sha256-9iuD0cy0PEtx9Jc626LtE0sAOtP451TGlFKGtC8Tjs4="; src = fetchFromGitHub { owner = "pgadmin-org"; repo = "pgadmin4"; rev = "REL-${lib.versions.major version}_${lib.versions.minor version}"; - hash = "sha256-oqOjWfmBJNqCCSyKzbdJkdNql7Him2HgAcRovWtjfbE="; + hash = "sha256-RefEuP/Oh4X6knnIBnPrlITXFHbbL2U9yfvc4Ng6VJ4="; }; # keep the scope, as it is used throughout the derivation and tests @@ -185,6 +185,7 @@ pythonPackages.buildPythonApplication rec { speaklater3 google-auth-oauthlib google-api-python-client + keyring ]; passthru.tests = { diff --git a/pkgs/tools/admin/pulumi-bin/data.nix b/pkgs/tools/admin/pulumi-bin/data.nix index d85ccc83a5815..4d1a6f8306943 100644 --- a/pkgs/tools/admin/pulumi-bin/data.nix +++ b/pkgs/tools/admin/pulumi-bin/data.nix @@ -1,16 +1,16 @@ # DO NOT EDIT! This file is generated automatically by update.sh { }: { - version = "3.68.0"; + version = "3.69.0"; pulumiPkgs = { x86_64-linux = [ { - url = "https://get.pulumi.com/releases/sdk/pulumi-v3.68.0-linux-x64.tar.gz"; - sha256 = "11h6kww4f6mc50shirg9vx5b08iwxad6z00m90xgybskmdk5bmdw"; + url = "https://get.pulumi.com/releases/sdk/pulumi-v3.69.0-linux-x64.tar.gz"; + sha256 = "135i9ci5z0d7rvazj297xfwl0097pmpfj3z6qqb3riyg0xx67zxa"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aiven-v6.2.0-linux-amd64.tar.gz"; - sha256 = "1ab212xgxpqn54l6lgpq6rpr53q9p78fxhlpkd056crklbmxl6rl"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aiven-v6.3.1-linux-amd64.tar.gz"; + sha256 = "147i9cz1j0bj4bzkp3rj00w9mhghvh56arszslww4f89ys75isc6"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-akamai-v4.5.0-linux-amd64.tar.gz"; @@ -21,12 +21,12 @@ sha256 = "1affkl1khsynhh8q775xz2jkz0alj2x976jk1fzh03fdq21893nv"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-artifactory-v3.5.0-linux-amd64.tar.gz"; - sha256 = "0w5y9j76cffyf74bdjlq6fqpi3071xijn6yyfljrfnl1vsnb4b3z"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-artifactory-v3.5.3-linux-amd64.tar.gz"; + sha256 = "0fhyvbky5482swz4ghd35qiwmr94dlvcm070q04a98j8pb1nv87l"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-auth0-v2.20.0-linux-amd64.tar.gz"; - sha256 = "1y5k3pr1bi2nf3xgviyk6x9wav6a1l0vyvap111ha1c2y0q526rx"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-auth0-v2.21.0-linux-amd64.tar.gz"; + sha256 = "06dzs92a58p9jllwwv3bvzxi56yzrv37imwxw0hxabqp7fm8pfhm"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aws-v5.41.0-linux-amd64.tar.gz"; @@ -45,44 +45,44 @@ sha256 = "0a1z89005769fc5j58jv67cz2gjggzw8nxyxm8aby0nfl5qsip3d"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-cloudflare-v5.2.0-linux-amd64.tar.gz"; - sha256 = "0prazbx4fjaz53mnbrdpxypd00xjqfprqnzrd24pmx79mgsxcswv"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-cloudflare-v5.2.1-linux-amd64.tar.gz"; + sha256 = "0ldwz8sw53m9gmds9y189bx3iy0na1hq02fjm5b4cdmw022gn9z7"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-consul-v3.8.0-linux-amd64.tar.gz"; sha256 = "1ld9zss8qfj3a3v75a09b3py266ba5ghdrj1d7vj9rdgid8xlxlq"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-datadog-v4.17.1-linux-amd64.tar.gz"; - sha256 = "140r6vkmfxxcvnjdcq60d90mvfhdw569qvid48yvyh5531b6iz4i"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-datadog-v4.18.1-linux-amd64.tar.gz"; + sha256 = "1v68wsnsgmfivap7lv8llcz1ydqqspzschp304w3k6f99jfs784j"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-digitalocean-v4.19.1-linux-amd64.tar.gz"; - sha256 = "0zknpam1li0slymr381825rssnpcd0m2wvakqnaihzxlh4m6arvi"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-digitalocean-v4.19.3-linux-amd64.tar.gz"; + sha256 = "1b6r137g34pdfkqiag5pg4n540pk11yz9y85v072zapvcn3j9fzm"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-docker-v4.2.1-linux-amd64.tar.gz"; - sha256 = "0gdwgzksmd29lhfd9zawkdz7hs7979xmp6bj53yx4lvdrlmqi8b1"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-docker-v4.2.4-linux-amd64.tar.gz"; + sha256 = "0yfksasj440509k0jkw4v8h917bdyp6jsvv0bi6r14g94izdm6yx"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-equinix-metal-v3.2.1-linux-amd64.tar.gz"; sha256 = "0hnardid0kbzy65dmn7vz8ddy5hq78nf2871zz6srf2hfyiv7qa4"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-fastly-v7.3.2-linux-amd64.tar.gz"; - sha256 = "0ykqamjkr2n29ncd6y4ckn000lj0ymkfsjap7qfacc31albisq7q"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-fastly-v8.0.0-linux-amd64.tar.gz"; + sha256 = "0657j3kwc5bmrz0qrl2xykhklrawscwzrczm1g3d0zz7ahmmaqmf"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gcp-v6.56.0-linux-amd64.tar.gz"; - sha256 = "0v20yb190kj2d6kmlhjjx3qva041iff12krlwspx2ccr421a3bcq"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gcp-v6.57.0-linux-amd64.tar.gz"; + sha256 = "17yxjbgpyvns3mf7s7y3rfp0kkvk1bjfv6d88p3p9xam8xj6czwg"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-github-v5.9.0-linux-amd64.tar.gz"; - sha256 = "1xqkmbsmc4v8z4hglnynb5yafv01q6sicnrjwafa44b3lph9q94l"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-github-v5.10.0-linux-amd64.tar.gz"; + sha256 = "0vfkv0cz8akssxaddfqvjk3xrb2didsiwisfc3wn7cg8ilgy7x7k"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gitlab-v5.0.1-linux-amd64.tar.gz"; - sha256 = "0qzhfx5qg3w2wkxf99v5vz23bywdj5vrlwl6r65islpivwm47s2r"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gitlab-v6.0.0-linux-amd64.tar.gz"; + sha256 = "0nrixy5jv91jdq0qq2v244nahrlz5lprihzsry1gacdkzgarw86l"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-google-native-v0.31.0-linux-amd64.tar.gz"; @@ -93,12 +93,12 @@ sha256 = "11lhwjzp6kyx05hxwfnz45g0qwkydsl2rb54rydfgy308jrwnzv4"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-kubernetes-v3.28.0-linux-amd64.tar.gz"; - sha256 = "06jqxv7s51w70grz27h5cb7zaq3mqxky2fqq5c681c3k3aar18jg"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-kubernetes-v3.28.1-linux-amd64.tar.gz"; + sha256 = "0bdjmdh818c1n8nc8qhfgasqz6bxy9qy3bxbjimkv3zv1r1kz7a5"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-linode-v4.1.0-linux-amd64.tar.gz"; - sha256 = "0p936j9vvy7x9dccqihb0npvxwcc95vlzx6j1yjjvbv6fdnnaz81"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-linode-v4.2.0-linux-amd64.tar.gz"; + sha256 = "003sin31fjnz4m2cc780digdgc59rmkgm82n91v7y3pv9mj7d2np"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mailgun-v3.4.1-linux-amd64.tar.gz"; @@ -117,20 +117,20 @@ sha256 = "0yrzdbcvg16a2v7hc6rq4cmavimkj4hjxd3kfkw8gd2cbi4kcmwf"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-random-v4.13.1-linux-amd64.tar.gz"; - sha256 = "0q479q0sdixakb54492hbla7bgnnwjmj3ichw3ah4lvf7nrha5sj"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-random-v4.13.2-linux-amd64.tar.gz"; + sha256 = "1a1l07v0hbay0gxvr05mrknllq6vqkyjbv9486klsdswqr9l4p6n"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-snowflake-v0.25.0-linux-amd64.tar.gz"; - sha256 = "16hk13wjrbj4r6nhvy6a63rpabbcv3y3vp90hngyx5wcbg2p4xqc"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-snowflake-v0.26.0-linux-amd64.tar.gz"; + sha256 = "0bs2m62a73s9k3v7acs31lhml2hgigrbw9is4i0hvhlrnk1r897x"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-spotinst-v3.32.0-linux-amd64.tar.gz"; - sha256 = "033gf0di9b2322pbl77z0b9rgrvlr660frpy1c27ykvazlrndawc"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-spotinst-v3.35.0-linux-amd64.tar.gz"; + sha256 = "1qwxzaq3wbgf0jwr95v10hkrsmr4c879bcsq4373syppz1849lw5"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-sumologic-v0.13.1-linux-amd64.tar.gz"; - sha256 = "17yfhy3vd8d95p1dh1q5lkxvcv2f7dry1nxm1inn6frlwc2y7qqx"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-sumologic-v0.14.0-linux-amd64.tar.gz"; + sha256 = "05zmzhqnpmpwhjw4467sryxl20kswdn770lm83h5zn5c1i0kgpw0"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-tailscale-v0.12.0-linux-amd64.tar.gz"; @@ -149,8 +149,8 @@ sha256 = "01jsl59rwns87ybx1hmfr634ma381i7xmx40ahrrfpg851mzsgig"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vsphere-v4.4.0-linux-amd64.tar.gz"; - sha256 = "0svlqccq9rb00hz8g5fbpb7r6wf5wbjacab8rvjcb13wvrc8rx54"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vsphere-v4.5.0-linux-amd64.tar.gz"; + sha256 = "020mya26d9jzwivgjnz6diyk8dq6zslw62qjr45a8ygk9hwfbmmk"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-wavefront-v1.4.0-linux-amd64.tar.gz"; @@ -163,12 +163,12 @@ ]; x86_64-darwin = [ { - url = "https://get.pulumi.com/releases/sdk/pulumi-v3.68.0-darwin-x64.tar.gz"; - sha256 = "1953kj1c14rqr0354hvgb7df18klhr86b80ld8pvg4xfp49z0ns9"; + url = "https://get.pulumi.com/releases/sdk/pulumi-v3.69.0-darwin-x64.tar.gz"; + sha256 = "0qaiq84z389xi10ggghrr2bdvia5mxqpl59yj2pk6sxya95gxfa9"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aiven-v6.2.0-darwin-amd64.tar.gz"; - sha256 = "0ahhgxgi5rj52n6mqyn7pvqvrg6sw7bjxbs4y9765dpas31zlgz8"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aiven-v6.3.1-darwin-amd64.tar.gz"; + sha256 = "1kfs09r7v8b93xrrz2wlp7x723pfmpzjcb0avkjj2zr0nq4wa96f"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-akamai-v4.5.0-darwin-amd64.tar.gz"; @@ -179,12 +179,12 @@ sha256 = "0r2484nrlbmayrrrxhpz2br0s4wp8wgfv2rwrahb732pxxbkg14z"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-artifactory-v3.5.0-darwin-amd64.tar.gz"; - sha256 = "1yh4dw9cj32q9q6kvrfr23mfsskkhwl6q08sc41z73ycd9xsdv4k"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-artifactory-v3.5.3-darwin-amd64.tar.gz"; + sha256 = "0mgm4gdkph5zkls5g9bf202pjdkqwhp3lndjx04n5d8ryzhaa154"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-auth0-v2.20.0-darwin-amd64.tar.gz"; - sha256 = "0s68zxdf93hyi51x6hgh9w1c1ianakbdczfsi4cyg5acrzbyd97f"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-auth0-v2.21.0-darwin-amd64.tar.gz"; + sha256 = "0dyd5p8acycvyn1g449kiqh5m30sc4h964hv65ac1j1fi3al3978"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aws-v5.41.0-darwin-amd64.tar.gz"; @@ -203,44 +203,44 @@ sha256 = "0cwar1wf9xsrwvk5pk4lj8lnhd1i55nkvrp59jmk04a6lgr18b0g"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-cloudflare-v5.2.0-darwin-amd64.tar.gz"; - sha256 = "1dy9z34qqvr31rf34l8yjrc1lpnfsyp6cfh2zx21ycbpycgxzvmw"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-cloudflare-v5.2.1-darwin-amd64.tar.gz"; + sha256 = "0sn1l9dxxz7133v6ax1p32w4bm37zsgs4wxqplnc653156ay3k29"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-consul-v3.8.0-darwin-amd64.tar.gz"; sha256 = "0v5h4jd1yyinchq332svcvcr1rw22xz6qv8c2660p0i50hhakv1p"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-datadog-v4.17.1-darwin-amd64.tar.gz"; - sha256 = "1z0g3cdwg38frpbrk6pqwik33cy6sy70n4kz8d0lfa339kb5hgxw"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-datadog-v4.18.1-darwin-amd64.tar.gz"; + sha256 = "1kbgvs7ym35x962g8plxnmcscvlih58f3idajpn9g0d66c85wcr6"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-digitalocean-v4.19.1-darwin-amd64.tar.gz"; - sha256 = "0vpa47dbqv4bw2i2ayxzh9xlph6y0l1sjrb203f55l312z5y2g22"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-digitalocean-v4.19.3-darwin-amd64.tar.gz"; + sha256 = "048vrdp4193syqyvn0q15kasjnn4bg2bfrgyh3zln19rchhjp708"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-docker-v4.2.1-darwin-amd64.tar.gz"; - sha256 = "1fafvm676cb9vkdgfz5nh0vqr3vc448n3i6fp9qlcbqf17k8frh6"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-docker-v4.2.4-darwin-amd64.tar.gz"; + sha256 = "0slwbpwh73jrj4xp5lpih8gv8jms6krq0r0dmppvq2ihzr7l2kxz"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-equinix-metal-v3.2.1-darwin-amd64.tar.gz"; sha256 = "1m5lh59h7nck1flzxs9m4n0ag0klk3jmnpf7hc509vffxs89xnjq"; 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} { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gitlab-v5.0.1-darwin-amd64.tar.gz"; - sha256 = "04v4ymafaygvglnhqi9nl14kdifdb8n5zjwwy19j00brhyvzd314"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gitlab-v6.0.0-darwin-amd64.tar.gz"; + sha256 = "0zpk35rlz8a2ar3rszr4yysam5z1bgw28h3zhylprzjapfvjbh21"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-google-native-v0.31.0-darwin-amd64.tar.gz"; @@ -251,12 +251,12 @@ sha256 = "1w7a56v6w3vm915x4q5sfrh7aav4jzz9h2733kim00154jzpw7y9"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-kubernetes-v3.28.0-darwin-amd64.tar.gz"; - sha256 = "00mlf1l46lcnmyp2as0qxrn9ix9dd79qmm3qscybp282ydv9pf4a"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-kubernetes-v3.28.1-darwin-amd64.tar.gz"; + sha256 = "0d9sr9kprw4rk9qcs59fh5abs3yqng7jz9rm7y50jxymxvkr97k3"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-linode-v4.1.0-darwin-amd64.tar.gz"; - sha256 = "0zzj62rzakx66zvgfj8dkizfbs87l92vnvxhnmwhayxp920bxsck"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-linode-v4.2.0-darwin-amd64.tar.gz"; + sha256 = "1li9wcsra16driikq52a1xi360awjk2kb2jbgg3glg36ng6c9rn4"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mailgun-v3.4.1-darwin-amd64.tar.gz"; @@ -275,20 +275,20 @@ sha256 = "0q9hjfyn4r14fplxx597kjy8g3jpcps4bp7gsyy4ri8fipldjnf3"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-random-v4.13.1-darwin-amd64.tar.gz"; - sha256 = "13hrz8r3q777lnky81rmf1vgj0lkh15gyvwmi8z57dxzxhyx9bx9"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-random-v4.13.2-darwin-amd64.tar.gz"; + sha256 = "0xdz6l3d646mmzn9llfw2zpgr8dk2drqkhf8fff9xljy736qc2zn"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-snowflake-v0.25.0-darwin-amd64.tar.gz"; - sha256 = "1mrd092c0all37s1bznka011skpvbdjcmq6scyd3yfap145pah5h"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-snowflake-v0.26.0-darwin-amd64.tar.gz"; + sha256 = "0m0898d64w1bhazq7kxxi7hgnhwf39qzsirfifwizrcjdma0s2cj"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-spotinst-v3.32.0-darwin-amd64.tar.gz"; - sha256 = "1x8wffkzgmj0wvs3059x2dszn0p1q083x5i9g3xhm9kcz980qcdl"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-spotinst-v3.35.0-darwin-amd64.tar.gz"; + sha256 = "11vsxqxzzl1n1256g7y3yi2m649lhzzypv30qylbii48pv1mb351"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-sumologic-v0.13.1-darwin-amd64.tar.gz"; - sha256 = "0p4s38nbmm2kpd50a7n8mpbddly7ip831jd9jhpq5r2i4f4i5q35"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-sumologic-v0.14.0-darwin-amd64.tar.gz"; + sha256 = "10xc481va5yvla73kx4d9n1mbscf5sxmrgfapb13nh4f8ic6rkzb"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-tailscale-v0.12.0-darwin-amd64.tar.gz"; @@ -307,8 +307,8 @@ sha256 = "1jn1j72s3dqjw0xdyk7mncw61fzqmwg4sqbbh7f3708wv1rznv5a"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vsphere-v4.4.0-darwin-amd64.tar.gz"; - sha256 = "1g7jcwrff8nd1m6fmvfri3nfgby8agcwmq60ascd45mkianwf2i8"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vsphere-v4.5.0-darwin-amd64.tar.gz"; + sha256 = "04l94yi47hpk6ih67iqlx6fv8i9qzb3bcwph17xwzf5sqx09n0cw"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-wavefront-v1.4.0-darwin-amd64.tar.gz"; @@ -321,12 +321,12 @@ ]; aarch64-linux = [ { - url = "https://get.pulumi.com/releases/sdk/pulumi-v3.68.0-linux-arm64.tar.gz"; - sha256 = "07z3zywp2v004s0my18vvp4zidqfg47mwbxzq4i961rfda9gsxfz"; + url = "https://get.pulumi.com/releases/sdk/pulumi-v3.69.0-linux-arm64.tar.gz"; + sha256 = "0icfnxqp6jx13rr8k5zkf5sjl373lq5px35v6v7hpj891hwc77rq"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aiven-v6.2.0-linux-arm64.tar.gz"; - sha256 = "14g12pqz6622xxhdkw6x1zsw8rlwfwgp724rrm8szza7gbmak5va"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aiven-v6.3.1-linux-arm64.tar.gz"; + sha256 = "1i8dn1byk0ykx5k1543najwlz09mpw6jlk4sl48jwjgh64595kb0"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-akamai-v4.5.0-linux-arm64.tar.gz"; @@ -337,12 +337,12 @@ sha256 = "0rg73c3m0rj69mirjqiw3sg5qwj058pnjzy9pxp6qfnxqzhzzjqc"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-artifactory-v3.5.0-linux-arm64.tar.gz"; - sha256 = "00p7iz1nlly29rviayaz84x73jipnr8d4hzcpjlv01y2wacq6s89"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-artifactory-v3.5.3-linux-arm64.tar.gz"; + sha256 = "0p6n38la1chyq9g2d7p9gncf74pipxzq6gifsa36bki16m1wwy7d"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-auth0-v2.20.0-linux-arm64.tar.gz"; - sha256 = "1gsn1rcyjdl4lj60xigy694vvn5rmcmpgzsf6jb2i3cm5rbnby5b"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-auth0-v2.21.0-linux-arm64.tar.gz"; + sha256 = "1zc1d9ngv35hc7523p7prij5mriid11d259y3yd3jrdapiq8b9l1"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aws-v5.41.0-linux-arm64.tar.gz"; @@ -361,44 +361,44 @@ sha256 = "1n0xyyrsg4x6qbnwg8m0cs1wfhs749v1g32wm81pa13kg1k57ya3"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-cloudflare-v5.2.0-linux-arm64.tar.gz"; - sha256 = "0hmfyfzmgb3ly83yf5wg022gwyaksrmk5plini0vd8q0y1bjjss7"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-cloudflare-v5.2.1-linux-arm64.tar.gz"; + sha256 = "0xc52wvrk09xf3rp3anca7awnwnzisqa6dc5lzryxy3qv5vi5y63"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-consul-v3.8.0-linux-arm64.tar.gz"; sha256 = "09m1444wy8y6qjbp9pzki3gvi9mrs88cpc7001m8xnb0iyhjj0sx"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-datadog-v4.17.1-linux-arm64.tar.gz"; - sha256 = "10nd5bwppyi7rz25lzyin0ihf6s4bhj92s7ki5brs49196zjp361"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-datadog-v4.18.1-linux-arm64.tar.gz"; + sha256 = "1fpwd1s4mc9820c88lh48xrpb9allhimy0jrwncj0b29118s5qms"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-digitalocean-v4.19.1-linux-arm64.tar.gz"; - sha256 = "1dq6nbvh1py951s2ips23fh4dg50r67d9g91r94ahagzb75pj5ml"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-digitalocean-v4.19.3-linux-arm64.tar.gz"; + sha256 = "1k4xgazc0zaivxx29nw5yain69y718yinz10hjws1ppd7zdwppcq"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-docker-v4.2.1-linux-arm64.tar.gz"; - sha256 = "176g61vkqyaj1fgbjsawyg3mx5cqn7wrp4sbvgnwrrg0vv4ba8kr"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-docker-v4.2.4-linux-arm64.tar.gz"; + sha256 = "17dby8kfawi4jycfkhnl2w30i649dfl25j5sk2adm0nnwibygpdy"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-equinix-metal-v3.2.1-linux-arm64.tar.gz"; sha256 = "111pia2f5xwkwaqs6p90ri29l5b3ivmahsa1bji4fwyyjyp22h4r"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-fastly-v7.3.2-linux-arm64.tar.gz"; - sha256 = "0km08jlfmxi04falbmd25hdmdbfrnvy1ga19lnl5rsaq0nwyfhaz"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-fastly-v8.0.0-linux-arm64.tar.gz"; + sha256 = "1gd00hi13ciivvnvqvm3gc6wp82scw14ksqv2pvqihagdlr8bzw6"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gcp-v6.56.0-linux-arm64.tar.gz"; - sha256 = "1zzdwrgwqk35xfxxvkb42f6ljmphi76nx4qc317zza28b5x1r7k4"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gcp-v6.57.0-linux-arm64.tar.gz"; + sha256 = "1yp6j323f2bv8045n21x8myxxw6ybmads6ilh8hjnkazjmmhxirj"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-github-v5.9.0-linux-arm64.tar.gz"; - sha256 = "02iacskh6j3mg17adbldblbyy72wy6857bk32wv3jhjfjx22r9ck"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-github-v5.10.0-linux-arm64.tar.gz"; + sha256 = "0fmq2ll8ksb8b1v976inrcmrxfmp1k8710j6bi3ac3fjqlakm6y1"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gitlab-v5.0.1-linux-arm64.tar.gz"; - sha256 = "01z7zs5mj91wgkdrzn5hx9l2jwn6i40c39hvynr1xwj5j4css1ic"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gitlab-v6.0.0-linux-arm64.tar.gz"; + sha256 = "1f0ma10m2337yph79jf370w586w4iadqx6qiwcc57k5n2fz6qbfg"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-google-native-v0.31.0-linux-arm64.tar.gz"; @@ -409,12 +409,12 @@ sha256 = "08acs2y7n2xmdsrcizy94yhbjwm5v044a5mlhgvk8y5zqdpyr0a7"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-kubernetes-v3.28.0-linux-arm64.tar.gz"; - sha256 = "19ic3d4fxk3fxwp89b29hsqg4afg44zvgmya09carprvmkk5x8vk"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-kubernetes-v3.28.1-linux-arm64.tar.gz"; + sha256 = "1aby12sjciirn2p19nsb4zp7h2kcwxgifn87gh98mjr11cxb1rkw"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-linode-v4.1.0-linux-arm64.tar.gz"; - sha256 = "0mcjwkip3yjsj0mx8dixl26hsa5d3aqcx9j4790q9a2afh56mla5"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-linode-v4.2.0-linux-arm64.tar.gz"; + sha256 = "1in86cnz777fpjhg6j2z5s890580a3j23sqvwv4bbr1bcbs1wbks"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mailgun-v3.4.1-linux-arm64.tar.gz"; @@ -433,20 +433,20 @@ sha256 = "0hj4a0llq088xcfp85k6nn8ssffj51lvhqp05sg8x3kbg6n0dapy"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-random-v4.13.1-linux-arm64.tar.gz"; - sha256 = "09np62m985ak4cmmbzfs2v4pk5sknfdbivxjfn38lrfcvgs5dg3r"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-random-v4.13.2-linux-arm64.tar.gz"; + sha256 = "0x8mgh057ln80rvwxzdis2qd4knasvm2f3f5cniywnb4zz1xygv2"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-snowflake-v0.25.0-linux-arm64.tar.gz"; - sha256 = "1bhma60bmylfaqx6lygp6vf9xjwzih6k3qcxcldyxfrrjwks6p2w"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-snowflake-v0.26.0-linux-arm64.tar.gz"; + sha256 = "1rrdxrhmym62cbnd4n7adg1j2b45v7cszjb3q8pwvwvr7d4rn71c"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-spotinst-v3.32.0-linux-arm64.tar.gz"; - sha256 = "05gaap0z9pa0iicrig7p3w9pprn9gi9ya5g3bdky2jpcn9xmai7x"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-spotinst-v3.35.0-linux-arm64.tar.gz"; + sha256 = "1swaxw5aqal5ils332zb3kg39lbs3kjfbk2rb591pbgyxx3agqry"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-sumologic-v0.13.1-linux-arm64.tar.gz"; - sha256 = "1dinl4wzawhnf0m140pw3x5jcwp1m6j1123dmqi55wz2m7wx1jm7"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-sumologic-v0.14.0-linux-arm64.tar.gz"; + sha256 = "0cshgck8fz5qq60bc04jd83756rnk1skwm1fvjc78vb38fyrgy84"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-tailscale-v0.12.0-linux-arm64.tar.gz"; @@ -465,8 +465,8 @@ sha256 = "1psibvdvnqmcjyd4knwxqq97k72da7qgrm2g08n41bvjdv10j6hh"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vsphere-v4.4.0-linux-arm64.tar.gz"; - sha256 = "158iqlvxdc38yn2cdifp94v4jmqbybczm98g3fc8n1ny2wr7akny"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vsphere-v4.5.0-linux-arm64.tar.gz"; + sha256 = "129fzjlp26pqb5xb4gqqyy62qk2hxrfhdmn5z5wib4vqhpjvl4nk"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-wavefront-v1.4.0-linux-arm64.tar.gz"; @@ -479,12 +479,12 @@ ]; aarch64-darwin = [ { - url = "https://get.pulumi.com/releases/sdk/pulumi-v3.68.0-darwin-arm64.tar.gz"; - sha256 = "0bv7y5si4kvnqs9ri251xplzmvmsqabha5qyfnlhnqv058s04kk9"; + url = "https://get.pulumi.com/releases/sdk/pulumi-v3.69.0-darwin-arm64.tar.gz"; + sha256 = "1gicyx2npr7s51v0ypg5f34wy6lscqp5wzn6fklfjf3br7wv53za"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aiven-v6.2.0-darwin-arm64.tar.gz"; - sha256 = "16pcpfbsd738sph7nikwm524qaqqjsaakf2xkc1rfq5n9fhzqjn8"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aiven-v6.3.1-darwin-arm64.tar.gz"; + sha256 = "0jcina7ziy381d815s25v18k53nwf1bb5rkiq36d39pqjy8h7cn1"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-akamai-v4.5.0-darwin-arm64.tar.gz"; @@ -495,12 +495,12 @@ sha256 = "0wmh8pxfhzhkshirjhj3fm0gdi0dfwvnb89x6fp0ycscc5ss3c5f"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-artifactory-v3.5.0-darwin-arm64.tar.gz"; - sha256 = "1c0c1zc6yn1c1b33899dvjpg39y2czmymg57wdzy659a1kncvy92"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-artifactory-v3.5.3-darwin-arm64.tar.gz"; + sha256 = "1p56v8028gcsaxwry9ig31dfr9dxmnbd8jsggjjbz0d74jcqdcqh"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-auth0-v2.20.0-darwin-arm64.tar.gz"; - sha256 = "0027lz00x959z0ni88dnkywnxgki98jhx34g37cj9mv77j530wxz"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-auth0-v2.21.0-darwin-arm64.tar.gz"; + sha256 = "1qfv67sb4pambxfsk58wxnbx1fl1xxksw2k05vyyss9a3xzf9mi7"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-aws-v5.41.0-darwin-arm64.tar.gz"; @@ -519,44 +519,44 @@ sha256 = "0bwnirhdhdsa2q68295ab1ny8jvqmykgf1sdwfnlc0gnz34nxyd2"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-cloudflare-v5.2.0-darwin-arm64.tar.gz"; - sha256 = "017sqqpl98bgk4f9j0qclivzl481dg6vsx23zpmbmddapb2hbhmm"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-cloudflare-v5.2.1-darwin-arm64.tar.gz"; + sha256 = "1cd222bq5igz4r7lnvasr4jaslz2i033y8yqyh502ssq4axbkhiv"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-consul-v3.8.0-darwin-arm64.tar.gz"; sha256 = "0301sm5d28yjw15k214rskq1w19a5b5l218y2qfzvv89z5qgh84r"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-datadog-v4.17.1-darwin-arm64.tar.gz"; - sha256 = "1fcma1rp8apaqfd32pkiha86m0bfaq9769z4axjn8vlqr2abfnzn"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-datadog-v4.18.1-darwin-arm64.tar.gz"; + sha256 = "0kdnhwmx9fl01306922jwmlia6izgkhcd84fl8km92hqx8xwcwwb"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-digitalocean-v4.19.1-darwin-arm64.tar.gz"; - sha256 = "1h5pahqhgj8kvagv8wgv1sf4cxk8vs8sinw5q0mlnwa5z0z5hgwj"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-digitalocean-v4.19.3-darwin-arm64.tar.gz"; + sha256 = "1i3ra9xlvz7g7rcbpi2085qsis4gmkhqb9if4dy0vzqhajsx7fwp"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-docker-v4.2.1-darwin-arm64.tar.gz"; - sha256 = "16w8d4s7j5ia6db6nn0qjw7iwz5rn54rhrjy4rydy5bi2sbw0fip"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-docker-v4.2.4-darwin-arm64.tar.gz"; + sha256 = "0x24l3y6jq7j240hsj2n9pqpnyjq0141n6c7i662nxx4dxzf040w"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-equinix-metal-v3.2.1-darwin-arm64.tar.gz"; sha256 = "12bzicm43l7yvh02v5fx3z8v46l9i7a9f677735xi5rjbmd2an4c"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-fastly-v7.3.2-darwin-arm64.tar.gz"; - sha256 = "0j1w8h5axvqlpzhhm1m4hq2ka44wzd1pl01vvmn8p7lz20kz0rq2"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-fastly-v8.0.0-darwin-arm64.tar.gz"; + sha256 = "0qayjyj6d8smmzb6x38h24a8aqrzr2kgz79gvi4k6kja02sxlqd9"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gcp-v6.56.0-darwin-arm64.tar.gz"; - sha256 = "17ag6am5qn3j94wbcihqql8hi9i28s3f6v6ivpbygzm9azl1w95i"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gcp-v6.57.0-darwin-arm64.tar.gz"; + sha256 = "0grricscwj59jqkx4jzix9gw0kbsqf393p0g70jiwl9f93b56pas"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-github-v5.9.0-darwin-arm64.tar.gz"; - sha256 = "07bqk2lvd5xwnfqjwh529djlqlnnq8yr7d04qxn9x1zhf5x970gw"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-github-v5.10.0-darwin-arm64.tar.gz"; + sha256 = "11198hv8lm05xz4yvlz495palp1h4zn3x0zvml4clhn2ip03mmp2"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gitlab-v5.0.1-darwin-arm64.tar.gz"; - sha256 = "1ca78izm19qimrrjx9j1p92skymmm97qyz5sgf0n3pqj8p109pp6"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-gitlab-v6.0.0-darwin-arm64.tar.gz"; + sha256 = "10ilfmllagp8008d5sdkdyd0ajr018n03lxi63x0bzc8xxfkp1an"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-google-native-v0.31.0-darwin-arm64.tar.gz"; @@ -567,12 +567,12 @@ sha256 = "0nh4i61wp6nhh2im37q58n943pl78b6b0kf27qinc9h26h96khz7"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-kubernetes-v3.28.0-darwin-arm64.tar.gz"; - sha256 = "10nmz9yvs09jb8p8ibx0mc5041g4d90mzq90z510vx7xj28b4fbp"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-kubernetes-v3.28.1-darwin-arm64.tar.gz"; + sha256 = "02pd9439i5vidcgif6c98g1l8wv3qz9qmghqgr5ya62m72fal879"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-linode-v4.1.0-darwin-arm64.tar.gz"; - sha256 = "16fq79l25226ca6gvx154n9d9xyh8m09j4vkvdyi0xip4ldqq3rh"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-linode-v4.2.0-darwin-arm64.tar.gz"; + sha256 = "1v920f9cnz8f1s0md48db6qq8xgqif2w4vxcq1czfr5i1c1hhv0w"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-mailgun-v3.4.1-darwin-arm64.tar.gz"; @@ -591,20 +591,20 @@ sha256 = "1fhll8bgamlv4kljngydmnhbc90bz3figg10qy3qa9kgqkrxm041"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-random-v4.13.1-darwin-arm64.tar.gz"; - sha256 = "0ll8ll02vdpjqxwc7ij5yhsp9k2d16jz437l3hhyi9cyh8grrfs3"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-random-v4.13.2-darwin-arm64.tar.gz"; + sha256 = "1w7g9gc01fpsa41csp5sv6q2w9g4i7gn5b1lnm0dal16169dkpy6"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-snowflake-v0.25.0-darwin-arm64.tar.gz"; - sha256 = "1d2q08njhg6xxjnsl0jpw2sgag53w1a9db1jnys4n0spvq2i13yd"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-snowflake-v0.26.0-darwin-arm64.tar.gz"; + sha256 = "1kir5wav9409bpsfjzd09g1ys72cgsk5bsagkh6r7zvdnqklw4hz"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-spotinst-v3.32.0-darwin-arm64.tar.gz"; - sha256 = "0nj0nlyck3j7lb0j5d7f34n1sgm2l3334gzjj1q87krjbp3zv0v2"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-spotinst-v3.35.0-darwin-arm64.tar.gz"; + sha256 = "1jy32ch692h2w2p25lcm6qpcw7s8c0albhyzfr76pqk9l7r9dmzn"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-sumologic-v0.13.1-darwin-arm64.tar.gz"; - sha256 = "1gg3w3lrnnnwvl1kzhkp7mgwgqkrs63m067qq3n13v46jpbr1jxy"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-sumologic-v0.14.0-darwin-arm64.tar.gz"; + sha256 = "17pv2i810z16l2mw6n5g0nd2c7ahx9pi5zrvjkw0zlj5zqn0gg6r"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-tailscale-v0.12.0-darwin-arm64.tar.gz"; @@ -623,8 +623,8 @@ sha256 = "1lnbsfcv1vrgc2hzmqwydxp9j6w9cmgpkpm83hmzz2ryy2vn6g07"; } { - url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vsphere-v4.4.0-darwin-arm64.tar.gz"; - sha256 = "1hy2w6x8mr7bi1pkaz4s8881w1nvl1nhrlqmc371xkpfkaahhj25"; + url = "https://api.pulumi.com/releases/plugins/pulumi-resource-vsphere-v4.5.0-darwin-arm64.tar.gz"; + sha256 = "12r3dbhqidlibzcl14al8rkwlrdxvaikh9cla8wd7hjpjmd4d5yj"; } { url = "https://api.pulumi.com/releases/plugins/pulumi-resource-wavefront-v1.4.0-darwin-arm64.tar.gz"; diff --git a/pkgs/tools/admin/pulumi/default.nix b/pkgs/tools/admin/pulumi/default.nix index 29b6450130430..0fea9e35bd298 100644 --- a/pkgs/tools/admin/pulumi/default.nix +++ b/pkgs/tools/admin/pulumi/default.nix @@ -14,7 +14,7 @@ buildGoModule rec { pname = "pulumi"; - version = "3.60.1"; + version = "3.69.0"; # Used in pulumi-language packages, which inherit this prop sdkVendorHash = "sha256-oXsU4h4CwukJHttYLT7JiW2He8Yq5qAwnxL8+G5FIpc="; @@ -23,12 +23,12 @@ buildGoModule rec { owner = pname; repo = pname; rev = "v${version}"; - hash = "sha256-bSuntT5b8UVrYw4ds4AfZB3Plvav5zGaEQpe34FefXk="; + hash = "sha256-tjYACGfUqWFAgOvcdPfGyZNxi0qhV6RaNgUgKivteZU="; # Some tests rely on checkout directory name name = "pulumi"; }; - vendorHash = "sha256-QDF2z8AjULQYvlxah/JgmbzoPuKQrgQng/33S+7K1Bw="; + vendorHash = "sha256-VVgawsRSjMIYu/+f9MmVQNgL90o8vrj9kzZpKbg8/98="; sourceRoot = "${src.name}/pkg"; diff --git a/pkgs/tools/admin/qovery-cli/default.nix b/pkgs/tools/admin/qovery-cli/default.nix index 43059055263b7..c9239c0b6e9cc 100644 --- a/pkgs/tools/admin/qovery-cli/default.nix +++ b/pkgs/tools/admin/qovery-cli/default.nix @@ -8,16 +8,16 @@ buildGoModule rec { pname = "qovery-cli"; - version = "0.58.15"; + version = "0.59.0"; src = fetchFromGitHub { owner = "Qovery"; repo = pname; rev = "v${version}"; - hash = "sha256-sADeiFzVSk4Y0ZHvSoBVbtGp/YWO8ioYzZ+FXO9A7Tg="; + hash = "sha256-EPnuCmkJrjj9STO/FlDNYZmyqTAgTHvqxTxmQcgJLmQ="; }; - vendorHash = "sha256-Jwg+c+61kCytOkrwzJJCOjIGrv832G7n/kUDLGIJ5xA="; + vendorHash = "sha256-nW1PZ/cg7rU3e729H9I4Mqi/Q9wbSFMvtl0Urv9Fl8E="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/tools/admin/realvnc-vnc-viewer/default.nix b/pkgs/tools/admin/realvnc-vnc-viewer/default.nix index e6f60459bfbdc..8c6b31919e9bf 100644 --- a/pkgs/tools/admin/realvnc-vnc-viewer/default.nix +++ b/pkgs/tools/admin/realvnc-vnc-viewer/default.nix @@ -9,12 +9,12 @@ stdenv.mkDerivation rec { pname = "realvnc-vnc-viewer"; - version = "7.1.0"; + version = "7.5.0"; src = { "x86_64-linux" = fetchurl { url = "https://downloads.realvnc.com/download/file/viewer.files/VNC-Viewer-${version}-Linux-x64.rpm"; - sha256 = "sha256-Mn4K2HICK7owHcXH85IJUncnpPZ56zNybkHZNiqYkHY="; + sha256 = "sha256-XemifIWeoi3Qdjv8HfEjtTYJvfi0eCXeQUXVld6aR9A="; }; }.${stdenv.system} or (throw "Unsupported system: ${stdenv.hostPlatform.system}"); diff --git a/pkgs/tools/admin/scaleway-cli/default.nix b/pkgs/tools/admin/scaleway-cli/default.nix index 84848db60abd7..785fe3c975df7 100644 --- a/pkgs/tools/admin/scaleway-cli/default.nix +++ b/pkgs/tools/admin/scaleway-cli/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "scaleway-cli"; - version = "2.14.0"; + version = "2.15.0"; src = fetchFromGitHub { owner = "scaleway"; repo = "scaleway-cli"; rev = "v${version}"; - sha256 = "sha256-NAo+nI4oaWTFqBfIHmkWGVYlFz5WjImvF3pfOFmw+cM="; + sha256 = "sha256-iKyUtUm+vDwHZmjoeNTEE3rabw0krSganaHiEIN9BWE="; }; - vendorHash = "sha256-iJLOkwXjfapZHGJ47raxmSW11HYsuB3ahEGDx2hFY10="; + vendorHash = "sha256-m03VMzLCBASn0O66Zh/E7UlC6GmgghgY0rdcKadL3mk="; ldflags = [ "-w" diff --git a/pkgs/tools/admin/trivy/default.nix b/pkgs/tools/admin/trivy/default.nix index 03650768cab4a..e87927481a37a 100644 --- a/pkgs/tools/admin/trivy/default.nix +++ b/pkgs/tools/admin/trivy/default.nix @@ -5,17 +5,17 @@ buildGoModule rec { pname = "trivy"; - version = "0.41.0"; + version = "0.42.0"; src = fetchFromGitHub { owner = "aquasecurity"; repo = pname; rev = "v${version}"; - sha256 = "sha256-GDApctrRWRJ9svPBWGt86slnCtmZyciQ03rhYW1958s="; + sha256 = "sha256-TmtQ7rs77W6YFjh3y9kvIZabcGT6U/SCr5Hg6pa7K+s="; }; # hash missmatch on across linux and darwin proxyVendor = true; - vendorHash = "sha256-JlLQpBiviVXcX1xK0pi2igErCzvOXBc28m4fzDuIQ1U="; + vendorHash = "sha256-4YUJ4HfbAvYt/QtI9wmh8326T4avIXCtPkICo4lEpqQ="; excludedPackages = [ "magefiles" "misc" ]; diff --git a/pkgs/tools/archivers/quickbms/0002-disable-openssl.patch b/pkgs/tools/archivers/quickbms/0002-disable-openssl.patch new file mode 100644 index 0000000000000..3d77f45e3f867 --- /dev/null +++ b/pkgs/tools/archivers/quickbms/0002-disable-openssl.patch @@ -0,0 +1,10 @@ +--- src/Makefile 2023-05-25 18:16:56.000296653 +0900 ++++ src/Makefile 2023-05-25 18:17:00.772272861 +0900 +@@ -23,7 +23,6 @@ + EXTRA_TARGETS = libs/amiga/amiga.s libs/powzix/*.cpp + CFLAGS += -msse2 + endif +-USE_OPENSSL = 1 + endif + + # -liconv and -fPIC are necessary on Android diff --git a/pkgs/tools/archivers/quickbms/default.nix b/pkgs/tools/archivers/quickbms/default.nix index d2f39ac2cf18c..b8e1e9fc6f1c7 100644 --- a/pkgs/tools/archivers/quickbms/default.nix +++ b/pkgs/tools/archivers/quickbms/default.nix @@ -1,4 +1,13 @@ -{ stdenv, lib, fetchzip, bzip2, lzo, openssl, zlib }: +{ stdenv +, lib +, fetchzip +, fetchpatch +, bzip2 +, lzo +, openssl_1_1 +, opensslSupport ? false +, zlib +}: stdenv.mkDerivation rec { version = "0.11.0"; @@ -9,7 +18,18 @@ stdenv.mkDerivation rec { hash = "sha256-uQKTE36pLO8uhrX794utqaDGUeyqRz6zLCQFA7DYkNc="; }; - buildInputs = [ bzip2 lzo openssl zlib ]; + patches = [ + # Fix errors on x86_64 and _rotl definition + (fetchpatch { + name = "0001-fix-compile.patch"; + url = "https://aur.archlinux.org/cgit/aur.git/plain/fix-compile.patch?h=quickbms&id=a2e3e4638295d7cfe39513bfef9447fb23154a6b"; + hash = "sha256-49fT/L4BNzMYnq1SXhFMgSDLybLkz6KSbgKmUpZZu08="; + stripLen = 1; + }) + ] ++ lib.optional (!opensslSupport) ./0002-disable-openssl.patch; + + buildInputs = [ bzip2 lzo zlib ] + ++ lib.optional (opensslSupport) openssl_1_1; makeFlags = [ "PREFIX=$(out)" ]; diff --git a/pkgs/tools/archivers/xarchiver/default.nix b/pkgs/tools/archivers/xarchiver/default.nix index 3a3223728a7ae..84052c475e92f 100644 --- a/pkgs/tools/archivers/xarchiver/default.nix +++ b/pkgs/tools/archivers/xarchiver/default.nix @@ -2,14 +2,14 @@ coreutils, zip, unzip, p7zip, unar, gnutar, bzip2, gzip, lhasa, wrapGAppsHook }: stdenv.mkDerivation rec { - version = "0.5.4.20"; + version = "0.5.4.21"; pname = "xarchiver"; src = fetchFromGitHub { owner = "ib"; repo = "xarchiver"; rev = version; - sha256 = "sha256-OzcfIFYaWez2B1lmAYvhm+knuYbyMu2ohs+kGEVG7K0="; + sha256 = "sha256-pYrF9fyEbay+iboL9EuoTETTI3RTcgv3yeVtAWvAe1Q="; }; nativeBuildInputs = [ intltool pkg-config makeWrapper wrapGAppsHook ]; diff --git a/pkgs/tools/audio/audiowaveform/default.nix b/pkgs/tools/audio/audiowaveform/default.nix index 9038589a9f6f7..f1c845a722319 100644 --- a/pkgs/tools/audio/audiowaveform/default.nix +++ b/pkgs/tools/audio/audiowaveform/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "audiowaveform"; - version = "1.7.1"; + version = "1.8.0"; src = fetchFromGitHub { owner = "bbc"; repo = "audiowaveform"; rev = version; - sha256 = "sha256-DxVEAe9j4BAMrfMiaxDfkGvL6CCT/v5oKTrxmgkHuyM="; + sha256 = "sha256-3Fpc0HvtuAYIkyuFrZ+sHkHRHaP4vo0Q4IoGqTksyqE="; }; nativeBuildInputs = [ cmake gtest ]; diff --git a/pkgs/tools/audio/botamusique/catch-invalid-versions.patch b/pkgs/tools/audio/botamusique/catch-invalid-versions.patch new file mode 100644 index 0000000000000..39b9aae8514ce --- /dev/null +++ b/pkgs/tools/audio/botamusique/catch-invalid-versions.patch @@ -0,0 +1,24 @@ +diff --git a/mumbleBot.py b/mumbleBot.py +index 11bc480..7395f41 100644 +--- a/mumbleBot.py ++++ b/mumbleBot.py +@@ -188,11 +188,14 @@ class MumbleBot: + th.start() + + last_startup_version = var.db.get("bot", "version", fallback=None) +- if not last_startup_version or version.parse(last_startup_version) < version.parse(self.version): +- var.db.set("bot", "version", self.version) +- if var.config.getboolean("bot", "auto_check_update"): +- changelog = util.fetch_changelog() +- self.send_channel_msg(tr("update_successful", version=self.version, changelog=changelog)) ++ try: ++ if not last_startup_version or version.parse(last_startup_version) < version.parse(self.version): ++ var.db.set("bot", "version", self.version) ++ if var.config.getboolean("bot", "auto_check_update"): ++ changelog = util.fetch_changelog() ++ self.send_channel_msg(tr("update_successful", version=self.version, changelog=changelog)) ++ except version.InvalidVersion: ++ pass + + # Set the CTRL+C shortcut + def ctrl_caught(self, signal, frame): diff --git a/pkgs/tools/audio/botamusique/default.nix b/pkgs/tools/audio/botamusique/default.nix index 2288066b82296..5eaaa9c873e37 100644 --- a/pkgs/tools/audio/botamusique/default.nix +++ b/pkgs/tools/audio/botamusique/default.nix @@ -1,6 +1,7 @@ { lib , stdenv , fetchFromGitHub +, fetchpatch , python3Packages , ffmpeg , makeWrapper @@ -53,6 +54,11 @@ stdenv.mkDerivation rec { # We can't update the package at runtime with NixOS, so this patch makes # the !update command mention that ./no-runtime-update.patch + + # Fix passing of invalid "git" version into version.parse, which results + # in an InvalidVersion exception. The upstream fix is insufficient, so + # we carry the correct patch downstream for now. + ./catch-invalid-versions.patch ]; postPatch = '' diff --git a/pkgs/tools/audio/catnip/default.nix b/pkgs/tools/audio/catnip/default.nix new file mode 100644 index 0000000000000..de299738242e3 --- /dev/null +++ b/pkgs/tools/audio/catnip/default.nix @@ -0,0 +1,50 @@ +{ lib +, buildGoModule +, fetchFromGitHub +, pkg-config +, portaudio +, testers +, catnip +}: + +buildGoModule rec { + pname = "catnip"; + version = "1.8.0"; + + src = fetchFromGitHub { + owner = "noriah"; + repo = "catnip"; + rev = "v${version}"; + hash = "sha256-eVEoQrI8NycEV/dPUNFqkzgjOYaGmH1+lLRRkOybXDU="; + }; + + vendorHash = "sha256-Hj453+5fhbUL6YMeupT5D6ydaEMe+ZQNgEYHtCUtTx4="; + + nativeBuildInputs = [ + pkg-config + ]; + + buildInputs = [ + portaudio + ]; + + ldflags = [ + "-s" + "-w" + "-X=main.version=${version}" + ]; + + passthru.tests = { + version = testers.testVersion { + package = catnip; + }; + }; + + meta = with lib; { + description = "Terminal audio visualizer for linux/unix/macOS/windows"; + homepage = "https://github.com/noriah/catnip"; + changelog = "https://github.com/noriah/catnip/releases/tag/${src.rev}"; + license = licenses.mit; + maintainers = with maintainers; [ figsoda ]; + }; +} diff --git a/pkgs/tools/audio/tidal-dl/default.nix b/pkgs/tools/audio/tidal-dl/default.nix new file mode 100644 index 0000000000000..2e8ba35e8ce43 --- /dev/null +++ b/pkgs/tools/audio/tidal-dl/default.nix @@ -0,0 +1,25 @@ +{ lib +, buildPythonApplication +, fetchPypi +, aigpy +}: + +buildPythonApplication rec { + pname = "tidal-dl"; + version = "2022.10.31.1"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-b2AAsiI3n2/v6HC37fMI/d8UcxZxsWM+fnWvdajHrOg="; + }; + + propagatedBuildInputs = [ aigpy ]; + + meta = { + homepage = "https://github.com/yaronzz/Tidal-Media-Downloader"; + description = "An application that lets you download videos and tracks from Tidal"; + license = lib.licenses.asl20; + maintainers = [ lib.maintainers.misterio77 ]; + platforms = lib.platforms.all; + }; +} diff --git a/pkgs/tools/backup/easysnap/default.nix b/pkgs/tools/backup/easysnap/default.nix index c9b70ee3735da..46952ce5327a3 100644 --- a/pkgs/tools/backup/easysnap/default.nix +++ b/pkgs/tools/backup/easysnap/default.nix @@ -13,7 +13,7 @@ stdenv.mkDerivation { installPhase = '' mkdir -p $out/bin - cp -n easysnap* $out/bin/ + cp easysnap* $out/bin/ for i in $out/bin/*; do substituteInPlace $i \ diff --git a/pkgs/tools/backup/fabs/default.nix b/pkgs/tools/backup/fabs/default.nix index 47e36b2139fa5..f6e9ec2915855 100644 --- a/pkgs/tools/backup/fabs/default.nix +++ b/pkgs/tools/backup/fabs/default.nix @@ -58,6 +58,7 @@ python3.pkgs.buildPythonApplication rec { homepage = "https://github.com/openafs-contrib/fabs"; license = with licenses; [ isc ]; maintainers = with maintainers; [ spacefrogg ]; + broken = lib.versionAtLeast python3.pkgs.sqlalchemy.version "2.0"; badPlatforms = [ "x86_64-darwin" "aarch64-darwin" diff --git a/pkgs/tools/backup/rustic-rs/default.nix b/pkgs/tools/backup/rustic-rs/default.nix index 337e08ad3c449..27b7c3541933f 100644 --- a/pkgs/tools/backup/rustic-rs/default.nix +++ b/pkgs/tools/backup/rustic-rs/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "rustic-rs"; - version = "0.5.3"; + version = "0.5.4"; src = fetchFromGitHub { owner = "rustic-rs"; repo = "rustic"; rev = "refs/tags/v${version}"; - hash = "sha256-OZ80foq6DQZoJuJsQT4hxAHvzYn+uJbqG29wiZ7mPi8="; + hash = "sha256-LAOU2cnKb+TEWNiXJkpgqNxuU16g/Kc3swGIUc8t9x0="; }; - cargoHash = "sha256-xdSAdw6YY6mYZDBKkH20wfB1oNiKecC7XhRKLUaHsTQ="; + cargoHash = "sha256-OTIdl2x5m90rEwNBu3LL3rFQ0FVS3GDYU7gf8P7CTaQ="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/tools/bluetooth/blueberry/default.nix b/pkgs/tools/bluetooth/blueberry/default.nix index a9c45f27abcd1..ac64242fe6465 100644 --- a/pkgs/tools/bluetooth/blueberry/default.nix +++ b/pkgs/tools/bluetooth/blueberry/default.nix @@ -6,6 +6,7 @@ , gnome , gobject-introspection , intltool +, libnotify , pavucontrol , python3Packages , util-linux @@ -33,6 +34,7 @@ stdenv.mkDerivation rec { bluez-tools cinnamon.xapp gnome.gnome-bluetooth_1_0 + libnotify python3Packages.python util-linux ]; diff --git a/pkgs/tools/bluetooth/bluez-alsa/default.nix b/pkgs/tools/bluetooth/bluez-alsa/default.nix index da87a7b89e5d0..1d663b81c2998 100644 --- a/pkgs/tools/bluetooth/bluez-alsa/default.nix +++ b/pkgs/tools/bluetooth/bluez-alsa/default.nix @@ -11,13 +11,13 @@ stdenv.mkDerivation rec { pname = "bluez-alsa"; - version = "4.0.0"; + version = "4.1.0"; src = fetchFromGitHub { owner = "Arkq"; repo = "bluez-alsa"; rev = "v${version}"; - sha256 = "sha256-Dp3O41nzo7j5rqxDEkR4bFPv0CNGOO4kWXAf8iy+jDg="; + sha256 = "sha256-qoG1hTVuSFbccfct9DqSI0BBPJwSFlhPPtv87ThtSBk="; }; nativeBuildInputs = [ pkg-config autoreconfHook ]; diff --git a/pkgs/tools/compression/lhasa/default.nix b/pkgs/tools/compression/lhasa/default.nix index a58f186129ede..9ced4a9b7bfba 100644 --- a/pkgs/tools/compression/lhasa/default.nix +++ b/pkgs/tools/compression/lhasa/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "lhasa"; - version = "0.3.1"; + version = "0.4.0"; src = fetchurl { url = "https://soulsphere.org/projects/lhasa/lhasa-${version}.tar.gz"; - sha256 = "092zi9av18ma20c6h9448k0bapvx2plnp292741dvfd9hmgqxc1z"; + sha256 = "sha256-p/yIPDBMUIVi+5P6MHpMNCsMiG/MJl8ouS3Aw5IgxbM="; }; meta = with lib; { diff --git a/pkgs/tools/compression/lz4/default.nix b/pkgs/tools/compression/lz4/default.nix index 584b000a3e293..f745f4f091aba 100644 --- a/pkgs/tools/compression/lz4/default.nix +++ b/pkgs/tools/compression/lz4/default.nix @@ -38,6 +38,7 @@ stdenv.mkDerivation rec { ] # TODO make full dictionary ++ lib.optional stdenv.hostPlatform.isMinGW "TARGET_OS=MINGW" + ++ lib.optional stdenv.hostPlatform.isLinux "TARGET_OS=Linux" ; doCheck = false; # tests take a very long time diff --git a/pkgs/tools/compression/pigz/default.nix b/pkgs/tools/compression/pigz/default.nix index e7a1df5fd6cda..3faab62a1e8ed 100644 --- a/pkgs/tools/compression/pigz/default.nix +++ b/pkgs/tools/compression/pigz/default.nix @@ -1,16 +1,24 @@ -{ lib, stdenv, fetchFromGitHub, zlib, util-linux }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, zlib, util-linux }: stdenv.mkDerivation rec { pname = "pigz"; - version = "2.6"; + version = "2.7"; src = fetchFromGitHub { owner = "madler"; - repo = "${pname}"; + repo = pname; rev = "refs/tags/v${version}"; - sha256 = "146qkmzi199xwmmf6bllanqfyl702fm1rnad8cd5r5yyrp5ks115"; + sha256 = "sha256-RYp3vRwlI6S/lcib+3t7qLYFWv11GUnj1Cmxm9eaVro="; }; + patches = [ + # needed to build the pigzn test binary + (fetchpatch { + url = "https://github.com/madler/pigz/commit/67fd6e436f4f479aead529a719e24d6864cf1dfa.patch"; + sha256 = "sha256-FkzLYob/WIVIB7eh03cdzpLy6SzoHLqEMsWyHdMTjbU="; + }) + ]; + enableParallelBuilding = true; buildInputs = [ zlib ] ++ lib.optional stdenv.isLinux util-linux; diff --git a/pkgs/tools/filesystems/apfsprogs/default.nix b/pkgs/tools/filesystems/apfsprogs/default.nix index 4e1593ea98bda..015bb0b88d1b4 100644 --- a/pkgs/tools/filesystems/apfsprogs/default.nix +++ b/pkgs/tools/filesystems/apfsprogs/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation { pname = "apfsprogs"; - version = "unstable-2023-05-16"; + version = "unstable-2023-06-06"; src = fetchFromGitHub { owner = "linux-apfs"; repo = "apfsprogs"; - rev = "7be75bcf1a533272bc69684b4b7d33c2adba315c"; - hash = "sha256-WHAUrDiXy5HCwN876bZGc/OUHJITf6Fnpx4kAwAhcAs="; + rev = "91827679dfb1d6f5719fbe22fa67e89c17adb133"; + hash = "sha256-gF7bOozAGGpuVP23mnPW81qH2gnVUdT9cxukzGJ+ydI="; }; buildPhase = '' diff --git a/pkgs/tools/filesystems/btrfs-progs/default.nix b/pkgs/tools/filesystems/btrfs-progs/default.nix index 08408d677f45a..8993a4005fa66 100644 --- a/pkgs/tools/filesystems/btrfs-progs/default.nix +++ b/pkgs/tools/filesystems/btrfs-progs/default.nix @@ -9,11 +9,11 @@ stdenv.mkDerivation rec { pname = "btrfs-progs"; - version = "6.3"; + version = "6.3.1"; src = fetchurl { url = "mirror://kernel/linux/kernel/people/kdave/btrfs-progs/btrfs-progs-v${version}.tar.xz"; - sha256 = "sha256-QKC9/3h+y0kOVTPbzv1IUhdtrxKq5aEVggPbQ9itan0="; + sha256 = "sha256-mtmDlMeTbDZQRFoTQQOg22rTv28WORff/0n/d2FLPxQ="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/filesystems/e2fsprogs/default.nix b/pkgs/tools/filesystems/e2fsprogs/default.nix index a1a2b812a8669..71ce5b080b0bb 100644 --- a/pkgs/tools/filesystems/e2fsprogs/default.nix +++ b/pkgs/tools/filesystems/e2fsprogs/default.nix @@ -6,11 +6,11 @@ stdenv.mkDerivation rec { pname = "e2fsprogs"; - version = "1.46.6"; + version = "1.47.0"; src = fetchurl { url = "mirror://sourceforge/${pname}/${pname}-${version}.tar.gz"; - hash = "sha256-vy/MfuUXj+c6MFf34qo/5S6Yt7tGFQnGewIboA+Uxvc="; + hash = "sha256-Zmev3lbu8MavJmhJdEAOTSKI6knpRBv15iKRldUaNXg="; }; # fuse2fs adds 14mb of dependencies diff --git a/pkgs/tools/filesystems/envfs/default.nix b/pkgs/tools/filesystems/envfs/default.nix index de85a4ab0ca21..ceb6c0412e30c 100644 --- a/pkgs/tools/filesystems/envfs/default.nix +++ b/pkgs/tools/filesystems/envfs/default.nix @@ -1,14 +1,14 @@ { rustPlatform, lib, fetchFromGitHub, nixosTests }: rustPlatform.buildRustPackage rec { pname = "envfs"; - version = "1.0.0"; + version = "1.0.1"; src = fetchFromGitHub { owner = "Mic92"; repo = "envfs"; rev = version; - hash = "sha256-aF8V1LwPGifFWoVxM0ydOnTX1pDVJ6HXevTxADJ/rsw="; + hash = "sha256-ttW1NUCtwnjAoiu7QgLGrlAB2PyY4oXm91LpWhbz8qk="; }; - cargoHash = "sha256-kw56tbe5zvWY5bI//dUqR1Rlumz8kOG4HeXiyEyL0I0="; + cargoHash = "sha256-BgXKwKD6w/GraBQEq61D7S7m2Q9TnkXNFJEIgDYo9L4="; passthru.tests = { envfs = nixosTests.envfs; diff --git a/pkgs/tools/graphics/graphviz/default.nix b/pkgs/tools/graphics/graphviz/default.nix index ee7350fbc9dbc..5ecb8642c5b04 100644 --- a/pkgs/tools/graphics/graphviz/default.nix +++ b/pkgs/tools/graphics/graphviz/default.nix @@ -10,7 +10,6 @@ , fontconfig , gd , gts -, libdevil , libjpeg , libpng , libtool @@ -54,7 +53,6 @@ stdenv.mkDerivation rec { fontconfig gd gts - libdevil pango bash ] ++ optionals withXorg (with xorg; [ libXrender libXaw libXpm ]) diff --git a/pkgs/tools/graphics/mesa-demos/default.nix b/pkgs/tools/graphics/mesa-demos/default.nix index 7fdface04b66c..0bc30c8773fd3 100644 --- a/pkgs/tools/graphics/mesa-demos/default.nix +++ b/pkgs/tools/graphics/mesa-demos/default.nix @@ -1,7 +1,23 @@ -{ lib, stdenv, fetchurl -, freeglut, glew, libGL, libGLU, libX11, libXext, mesa -, meson, ninja, pkg-config, wayland, wayland-protocols -, vulkan-loader, libxkbcommon, libdecor, glslang }: +{ lib +, stdenv +, fetchurl +, freeglut +, libGL +, libGLU +, libX11 +, libXext +, mesa +, meson +, ninja +, pkg-config +, wayland +, wayland-scanner +, wayland-protocols +, vulkan-loader +, libxkbcommon +, libdecor +, glslang +}: stdenv.mkDerivation rec { pname = "mesa-demos"; @@ -12,11 +28,33 @@ stdenv.mkDerivation rec { sha256 = "sha256-MEaj0mp7BRr3690lel8jv+sWDK1u2VIynN/x6fHtSWs="; }; + strictDeps = true; + + depsBuildBuild = [ + pkg-config + ]; + + nativeBuildInputs = [ + meson + ninja + pkg-config + wayland-scanner + glslang + ]; + buildInputs = [ - freeglut glew libX11 libXext libGL libGLU mesa wayland - wayland-protocols vulkan-loader libxkbcommon libdecor glslang - ] ++ lib.optional (mesa ? osmesa) mesa.osmesa ; - nativeBuildInputs = [ meson ninja pkg-config wayland ]; + freeglut + libX11 + libXext + libGL + libGLU + mesa + wayland + wayland-protocols + vulkan-loader + libxkbcommon + libdecor + ] ++ lib.optional (mesa ? osmesa) mesa.osmesa; mesonFlags = [ "-Degl=${if stdenv.isDarwin then "disabled" else "auto"}" diff --git a/pkgs/tools/graphics/resvg/default.nix b/pkgs/tools/graphics/resvg/default.nix index 6624d16243a1f..d1cdcc3df49d7 100644 --- a/pkgs/tools/graphics/resvg/default.nix +++ b/pkgs/tools/graphics/resvg/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "resvg"; - version = "0.34.0"; + version = "0.34.1"; src = fetchFromGitHub { owner = "RazrFalcon"; repo = pname; rev = "v${version}"; - hash = "sha256-S0HhaZ8zHcuMmo9mSJwmUXnDExMBsv176lrM9YmSEg8="; + hash = "sha256-4sjjd2IKca4NBTCTxhdqdxuzjEMKc85ckRNrNSjhUnE="; }; - cargoHash = "sha256-SFQ2w/Um1hgpy+cz+OZoaLjvJPcOa5Wc29v66pt+k3g="; + cargoHash = "sha256-PEJjtrsQF4h9rCP1DFFP5EFjW/6ZMgdMCawIc9cW76s="; cargoBuildFlags = [ "--package=resvg" diff --git a/pkgs/tools/graphics/ueberzugpp/default.nix b/pkgs/tools/graphics/ueberzugpp/default.nix index 70d51a142f48c..15faa303f8d87 100644 --- a/pkgs/tools/graphics/ueberzugpp/default.nix +++ b/pkgs/tools/graphics/ueberzugpp/default.nix @@ -16,8 +16,6 @@ , libsixel , microsoft-gsl , chafa -, libuuid -, libossp_uuid , enableOpencv ? stdenv.isLinux , opencv , enableSway ? stdenv.isLinux @@ -32,13 +30,13 @@ stdenv.mkDerivation rec { pname = "ueberzugpp"; - version = "2.8.5"; + version = "2.8.6"; src = fetchFromGitHub { owner = "jstkdng"; repo = "ueberzugpp"; rev = "v${version}"; - hash = "sha256-WnrKwbh7m84xlKMuixkB8LLw8Pzb8+mZV9cHWiI6cBY="; + hash = "sha256-FNDFNPNiTLAB90dRpVX3XmbzB5pkkJmnhENmsPRldVE="; }; # error: no member named 'ranges' in namespace 'std' @@ -72,7 +70,6 @@ stdenv.mkDerivation rec { microsoft-gsl chafa cli11 - (if stdenv.isLinux then libuuid else libossp_uuid) ] ++ lib.optionals enableOpencv [ opencv ] ++ lib.optionals enableSway [ diff --git a/pkgs/tools/inputmethods/m17n-db/default.nix b/pkgs/tools/inputmethods/m17n-db/default.nix index 92a783f46a4b7..a8bffd9989a96 100644 --- a/pkgs/tools/inputmethods/m17n-db/default.nix +++ b/pkgs/tools/inputmethods/m17n-db/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "m17n-db"; - version = "1.8.0"; + version = "1.8.2"; src = fetchurl { url = "https://download.savannah.gnu.org/releases/m17n/m17n-db-${version}.tar.gz"; - sha256 = "0vfw7z9i2s9np6nmx1d4dlsywm044rkaqarn7akffmb6bf1j6zv5"; + sha256 = "sha256-vHR+J9ct9YoH9DG3JdeuQJIyLbxGEUykBTgoIbK6XGk="; }; nativeBuildInputs = [ gettext ]; @@ -20,6 +20,7 @@ stdenv.mkDerivation rec { meta = { homepage = "https://www.nongnu.org/m17n/"; description = "Multilingual text processing library (database)"; + changelog = "https://git.savannah.nongnu.org/cgit/m17n/m17n-db.git/plain/NEWS?h=REL-${lib.replaceStrings [ "." ] [ "-" ] version}"; license = lib.licenses.lgpl21Plus; platforms = lib.platforms.linux; maintainers = with lib.maintainers; [ astsmtl ]; diff --git a/pkgs/tools/inputmethods/m17n-lib/default.nix b/pkgs/tools/inputmethods/m17n-lib/default.nix index ff3b0afad25da..73d7353894fef 100644 --- a/pkgs/tools/inputmethods/m17n-lib/default.nix +++ b/pkgs/tools/inputmethods/m17n-lib/default.nix @@ -1,24 +1,20 @@ -{ lib, stdenv, fetchurl, fetchpatch, m17n_db, autoreconfHook, pkg-config }: +{ lib +, stdenv +, fetchurl +, fetchpatch +, m17n_db +, autoreconfHook +, pkg-config +}: stdenv.mkDerivation rec { pname = "m17n-lib"; - version = "1.8.0"; + version = "1.8.2"; src = fetchurl { url = "https://download.savannah.gnu.org/releases/m17n/m17n-lib-${version}.tar.gz"; - sha256 = "0jp61y09xqj10mclpip48qlfhniw8gwy8b28cbzxy8hq8pkwmfkq"; + hash = "sha256-5bA0SvnxFdlJV6P5ud68T45nG2n4wf1eC2iKeU16J/I="; }; - patches = [ - (fetchpatch { - # Patch pending upstream inclusion: - # https://savannah.nongnu.org/bugs/index.php?61377 - name = "parallel-build.patch"; - url = "https://savannah.nongnu.org/bugs/download.php?file_id=53704"; - hash = "sha256-1smKSIFVRJZSwCv0NiUsnndxKcPnJ/wqzH8+ka6nfNM="; - excludes = [ "src/ChangeLog" ]; - }) - ]; - strictDeps = true; # reconf needed to sucesfully cross-compile diff --git a/pkgs/tools/misc/atuin/default.nix b/pkgs/tools/misc/atuin/default.nix index 046cbdaf2f0c9..b0c8f63a8c48b 100644 --- a/pkgs/tools/misc/atuin/default.nix +++ b/pkgs/tools/misc/atuin/default.nix @@ -6,23 +6,25 @@ , libiconv , Security , SystemConfiguration -, xvfb-run , nixosTests }: rustPlatform.buildRustPackage rec { pname = "atuin"; - version = "14.0.1"; + version = "15.0.0"; src = fetchFromGitHub { owner = "ellie"; repo = pname; rev = "v${version}"; - hash = "sha256-mfeHgUCnt/DkdKxFlYx/t2LLjiqDX5mBMHto9A4mj78="; + hash = "sha256-BX1WpvJMcfpepsRX0U6FJBL5/+mpUyTZxm65BbbZLJA="; }; # TODO: unify this to one hash because updater do not support this - cargoHash = if stdenv.isLinux then "sha256-oaBTj+ZSJ36AFwIrB6d0cZppoAzV4QDr3+EylYqY7cw=" else "sha256-UNuoW/EOGtuNROm1qZJ4afDfMlecziVsem1m3Z1ZsOU="; + cargoHash = + if stdenv.isLinux + then "sha256-EnIR+BXw8oYlv3dpYy4gAkN/zckRI8KEAbbR9wPmMq4=" + else "sha256-hHcahzrIuXIgOv+sx0HbC9f5guTcTr6L4eeLoiQsAzA="; nativeBuildInputs = [ installShellFiles ]; @@ -35,16 +37,6 @@ rustPlatform.buildRustPackage rec { --zsh <($out/bin/atuin gen-completions -s zsh) ''; - nativeCheckInputs = lib.optionals xvfb-run.meta.available [ - xvfb-run - ]; - - checkPhase = lib.optionalString xvfb-run.meta.available '' - runHook preCheck - xvfb-run cargo test - runHook postCheck - ''; - passthru.tests = { inherit (nixosTests) atuin; }; diff --git a/pkgs/tools/misc/basez/default.nix b/pkgs/tools/misc/basez/default.nix new file mode 100644 index 0000000000000..e7fe906836e37 --- /dev/null +++ b/pkgs/tools/misc/basez/default.nix @@ -0,0 +1,26 @@ +{ lib, stdenv, fetchurl } : + +stdenv.mkDerivation rec { + pname = "basez"; + version = "1.6.2"; + + src = fetchurl { + url = "http://www.quarkline.net/basez/download/basez-${version}.tar.gz"; + sha256 = "sha256-Kp+CFIh5HCdj7wEgx1xD3IPdFlZ7fEFvMDMYif1ZiTc="; + }; + + doCheck = true; + + meta = with lib; { + description = "Base 16/32/64 encode/decode data to standard output"; + longDescription = '' + Encode data into/decode data from base16, base32, base32hex, base64 or + base64url stream per RFC 4648; MIME base64 Content-Transfer-Encoding + per RFC 2045; or PEM Printable Encoding per RFC 1421. + ''; + homepage = "http://www.quarkline.net/basez/"; + license = licenses.gpl3Plus; + maintainers = [ maintainers.oaksoaj ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/tools/misc/boxxy/default.nix b/pkgs/tools/misc/boxxy/default.nix index 80d71ed3035d9..fa6d5e9db0647 100644 --- a/pkgs/tools/misc/boxxy/default.nix +++ b/pkgs/tools/misc/boxxy/default.nix @@ -8,16 +8,16 @@ rustPlatform.buildRustPackage rec { pname = "boxxy"; - version = "0.7.1"; + version = "0.7.2"; src = fetchFromGitHub { owner = "queer"; repo = "boxxy"; rev = "v${version}"; - hash = "sha256-cXEoY9+no+WSp/VbbKl6q/mV5+B5d54kuIRfTtQUFc4="; + hash = "sha256-hA+xgvixq9h8HdUVM/8WvYhl+aADiqkMLp0JPLD0YUE="; }; - cargoHash = "sha256-PiX10Q3tYkVcbj3SX5MkaN1xQ/H7SCNpqTIgG+nJ6uo="; + cargoHash = "sha256-LLDlnCO2POMcchXwbUuEYfM8tFlOLGzv6ErgXsobfsU="; nativeBuildInputs = [ pkg-config diff --git a/pkgs/tools/misc/charasay/default.nix b/pkgs/tools/misc/charasay/default.nix new file mode 100644 index 0000000000000..3ce3073ecd74e --- /dev/null +++ b/pkgs/tools/misc/charasay/default.nix @@ -0,0 +1,39 @@ +{ lib +, rustPlatform +, fetchFromGitHub +, installShellFiles +}: + +rustPlatform.buildRustPackage rec { + pname = "charasay"; + version = "2.0.0"; + + src = fetchFromGitHub { + owner = "latipun7"; + repo = pname; + rev = "v${version}"; + hash = "sha256-99lMXgSHgxKc0GHnRRciMoZ+rQJyMAx+27fj6NkXxds="; + }; + + cargoHash = "sha256-0la16XinseOXPH2mvdYD7ZquvF2dju4UPBwl5VrTEZA="; + + nativeBuildInputs = [ installShellFiles ]; + + postPatch = '' + rm .cargo/config.toml + ''; + + postInstall = '' + installShellCompletion --cmd himalaya \ + --bash <($out/bin/chara completion --shell bash) \ + --fish <($out/bin/chara completion --shell fish) \ + --zsh <($out/bin/chara completion --shell zsh) + ''; + + meta = with lib; { + description = "The future of cowsay - Colorful characters saying something"; + homepage = "https://github.com/latipun7/charasay"; + license = licenses.mit; + maintainers = with maintainers; [ hmajid2301 ]; + }; +} diff --git a/pkgs/tools/misc/chezmoi/default.nix b/pkgs/tools/misc/chezmoi/default.nix index 50e25b4212589..044ffeaf51ddd 100644 --- a/pkgs/tools/misc/chezmoi/default.nix +++ b/pkgs/tools/misc/chezmoi/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "chezmoi"; - version = "2.33.6"; + version = "2.34.0"; src = fetchFromGitHub { owner = "twpayne"; repo = "chezmoi"; rev = "v${version}"; - hash = "sha256-tBEhhYfwbipOmGl9lkzhOdXRf3CPNhaIYi4wppAW4Ps="; + hash = "sha256-0T/oSt4EJ0doARuoAuFP8TEsgJxxDdh6A4aEEbYkyP4="; }; - vendorHash = "sha256-NDqwA6JHpq8ItT7ctv3KKkUwDZNgAjfgigqX9mGEYVY="; + vendorHash = "sha256-hIR2vI+wvT5pN87sDMCHinTqj3lBvJUPddgQ3+j3Ja0="; doCheck = false; diff --git a/pkgs/tools/misc/codemov/Cargo.lock b/pkgs/tools/misc/codemov/Cargo.lock index 6682a6d7fe88c..a78c7abb7bdfb 100644 --- a/pkgs/tools/misc/codemov/Cargo.lock +++ b/pkgs/tools/misc/codemov/Cargo.lock @@ -18,6 +18,15 @@ dependencies = [ ] [[package]] +name = "aho-corasick" +version = "1.0.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "67fc08ce920c31afb70f013dcce1bfc3a3195de6a228474e45e1f145b36f8d04" +dependencies = [ + "memchr", +] + +[[package]] name = "ansi_term" version = "0.12.1" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -28,9 +37,9 @@ dependencies = [ [[package]] name = "anstream" -version = "0.3.0" +version = "0.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9e579a7752471abc2a8268df8b20005e3eadd975f585398f17efcfd8d4927371" +checksum = "0ca84f3628370c59db74ee214b3263d58f9aadd9b4fe7e711fd87dc452b7f163" dependencies = [ "anstyle", "anstyle-parse", @@ -67,9 +76,9 @@ dependencies = [ [[package]] name = "anstyle-wincon" -version = "1.0.0" +version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4bcd8291a340dd8ac70e18878bc4501dd7b4ff970cfa21c207d36ece51ea88fd" +checksum = "180abfa45703aebe0093f79badacc01b8fd4ea2e35118747e5811127f926e188" dependencies = [ "anstyle", "windows-sys 0.48.0", @@ -77,9 +86,9 @@ dependencies = [ [[package]] name = "anyhow" -version = "1.0.70" +version = "1.0.71" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7de8ce5e0f9f8d88245311066a578d72b7af3e7088f32783804676302df237e4" +checksum = "9c7d0618f0e0b7e8ff11427422b64564d5fb0be1940354bfe2e0529b18a9d9b8" [[package]] name = "atty" @@ -100,9 +109,9 @@ checksum = "d468802bab17cbc0cc575e9b053f41e72aa36bfa6b7f55e3529ffa43161b97fa" [[package]] name = "base64" -version = "0.21.0" +version = "0.21.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a4a4ddaa51a5bc52a6948f74c06d20aaaddb71924eab79b8c97a8c556e942d6a" +checksum = "604178f6c5c21f02dc555784810edfb88d34ac2c73b2eae109655649ee73ce3d" [[package]] name = "bincode" @@ -127,9 +136,9 @@ checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a" [[package]] name = "bstr" -version = "1.4.0" +version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c3d4260bcc2e8fc9df1eac4919a720effeb63a3f0952f5bf4944adfa18897f09" +checksum = "a246e68bb43f6cd9db24bea052a53e40405417c5fb372e3d1a8a7f770a564ef5" dependencies = [ "memchr", "once_cell", @@ -139,9 +148,9 @@ dependencies = [ [[package]] name = "bumpalo" -version = "3.12.0" +version = "3.13.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0d261e256854913907f67ed06efbc3338dfe6179796deefc1ff763fc1aee5535" +checksum = "a3e2c3daef883ecc1b5d58c15adae93470a91d425f3532ba1695849656af3fc1" [[package]] name = "bytemuck" @@ -175,117 +184,79 @@ checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" [[package]] name = "clap" -version = "3.2.23" +version = "4.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "71655c45cb9845d3270c9d6df84ebe72b4dad3c2ba3f7023ad47c144e4e473a5" -dependencies = [ - "atty", - "bitflags", - "clap_derive 3.2.18", - "clap_lex 0.2.4", - "indexmap", - "once_cell", - "strsim", - "termcolor", - "textwrap", -] - -[[package]] -name = "clap" -version = "4.2.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "956ac1f6381d8d82ab4684768f89c0ea3afe66925ceadb4eeb3fc452ffc55d62" +checksum = "93aae7a4192245f70fe75dd9157fc7b4a5bf53e88d30bd4396f7d8f9284d5acc" dependencies = [ "clap_builder", - "clap_derive 4.2.0", + "clap_derive", "once_cell", ] [[package]] name = "clap_builder" -version = "4.2.4" +version = "4.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "84080e799e54cff944f4b4a4b0e71630b0e0443b25b985175c7dddc1a859b749" +checksum = "4f423e341edefb78c9caba2d9c7f7687d0e72e89df3ce3394554754393ac3990" dependencies = [ "anstream", "anstyle", "bitflags", - "clap_lex 0.4.1", + "clap_lex", "strsim", ] [[package]] name = "clap_derive" -version = "3.2.18" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ea0c8bce528c4be4da13ea6fead8965e95b6073585a2f05204bd8f4119f82a65" -dependencies = [ - "heck", - "proc-macro-error", - "proc-macro2", - "quote", - "syn 1.0.109", -] - -[[package]] -name = "clap_derive" -version = "4.2.0" +version = "4.3.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3f9644cd56d6b87dbe899ef8b053e331c0637664e9e21a33dfcdc36093f5c5c4" +checksum = "191d9573962933b4027f932c600cd252ce27a8ad5979418fe78e43c07996f27b" dependencies = [ "heck", "proc-macro2", "quote", - "syn 2.0.15", + "syn", ] [[package]] name = "clap_lex" -version = "0.2.4" +version = "0.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2850f2f5a82cbf437dd5af4d49848fbdfc27c157c3d010345776f952765261c5" -dependencies = [ - "os_str_bytes", -] - -[[package]] -name = "clap_lex" -version = "0.4.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8a2dd5a6fe8c6e3502f568a6353e5273bbb15193ad9a89e457b9970798efbea1" +checksum = "2da6da31387c7e4ef160ffab6d5e7f00c42626fe39aea70a7b0f1773f7dd6c1b" [[package]] name = "codemov" version = "0.1.0" dependencies = [ - "clap 3.2.23", + "clap", "codevis", "glob", "image", - "open", + "open 4.1.0", "prodash", "syntect", ] [[package]] name = "codevis" -version = "0.4.1" +version = "0.8.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "430a32b8cfd95de3d11b724050874a030946d1d52face7fdc5530a959b6dc714" +checksum = "daaaadded55f3c0171c36b0bbfec52dc012afc18018d9515ad836ef5f8b14d99" dependencies = [ "anyhow", "bstr", "bytesize", - "clap 4.2.4", + "clap", "flume", "ignore", "image", "memmap2", "num_cpus", - "open", + "open 3.2.0", "prodash", "signal-hook", "syntect", + "unifont-bitmap", ] [[package]] @@ -460,12 +431,12 @@ dependencies = [ [[package]] name = "flate2" -version = "1.0.25" +version = "1.0.26" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a8a2db397cb1c8772f31494cb8917e48cd1e64f0fa7efac59fbd741a0a8ce841" +checksum = "3b9429470923de8e8cbd4d2dc513535400b4b3fef0319fb5c4e1f520a7bef743" dependencies = [ "crc32fast", - "miniz_oxide 0.6.2", + "miniz_oxide 0.7.1", ] [[package]] @@ -534,7 +505,7 @@ version = "0.4.10" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "029d74589adefde59de1a0c4f4732695c32805624aec7b68d91503d4dba79afc" dependencies = [ - "aho-corasick", + "aho-corasick 0.7.20", "bstr", "fnv", "log", @@ -649,9 +620,9 @@ dependencies = [ [[package]] name = "io-lifetimes" -version = "1.0.10" +version = "1.0.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9c66c74d2ae7e79a5a8f7ac924adbe38ee42a859c6539ad869eb51f0b52dc220" +checksum = "eae7b9aee968036d54dce06cebaefd919e4472e753296daccd6d344e3e2df0c2" dependencies = [ "hermit-abi 0.3.1", "libc", @@ -659,6 +630,15 @@ dependencies = [ ] [[package]] +name = "is-docker" +version = "0.2.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "928bae27f42bc99b60d9ac7334e3a21d10ad8f1835a4e12ec3ec0464765ed1b3" +dependencies = [ + "once_cell", +] + +[[package]] name = "is-terminal" version = "0.4.7" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -671,6 +651,16 @@ dependencies = [ ] [[package]] +name = "is-wsl" +version = "0.4.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "173609498df190136aa7dea1a91db051746d339e18476eed5ca40521f02d7aa5" +dependencies = [ + "is-docker", + "once_cell", +] + +[[package]] name = "itoa" version = "1.0.6" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -687,9 +677,9 @@ dependencies = [ [[package]] name = "js-sys" -version = "0.3.61" +version = "0.3.63" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "445dde2150c55e483f3d8416706b97ec8e8237c307e5b7b4b8dd15e6af2a0730" +checksum = "2f37a4a5928311ac501dee68b3c7613a1037d0edb30c8e5427bd832d55d1b790" dependencies = [ "wasm-bindgen", ] @@ -708,9 +698,9 @@ checksum = "03087c2bad5e1034e8cace5926dec053fb3790248370865f5117a7d0213354c8" [[package]] name = "libc" -version = "0.2.141" +version = "0.2.144" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3304a64d199bb964be99741b7a14d26972741915b3649639149b2479bb46f4b5" +checksum = "2b00cc1c228a6782d0f076e7b232802e0c5689d41bb5df366f2a6b6621cfdfe1" [[package]] name = "line-wrap" @@ -729,9 +719,9 @@ checksum = "0717cef1bc8b636c6e1c1bbdefc09e6322da8a9321966e8928ef80d20f7f770f" [[package]] name = "linux-raw-sys" -version = "0.3.2" +version = "0.3.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3f508063cc7bb32987c71511216bd5a32be15bccb6a80b52df8b9d7f01fc3aa2" +checksum = "ef53942eb7bf7ff43a617b3e2c1c4a5ecf5944a7c1bc12d7ee39bbb15e5c1519" [[package]] name = "lock_api" @@ -745,12 +735,9 @@ dependencies = [ [[package]] name = "log" -version = "0.4.17" +version = "0.4.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "abb12e687cfb44aa40f41fc3978ef76448f9b6038cad6aef4259d3c095a2382e" -dependencies = [ - "cfg-if", -] +checksum = "518ef76f2f87365916b142844c16d8fefd85039bc5699050210a7778ee1cd1de" [[package]] name = "memchr" @@ -797,14 +784,14 @@ dependencies = [ [[package]] name = "mio" -version = "0.8.6" +version = "0.8.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5b9d9a46eff5b4ff64b45a9e316a6d1e0bc719ef429cbec4dc630684212bfdf9" +checksum = "927a765cd3fc26206e66b296465fa9d3e5ab003e651c1b3c060e7956d96b19d2" dependencies = [ "libc", "log", "wasi", - "windows-sys 0.45.0", + "windows-sys 0.48.0", ] [[package]] @@ -858,9 +845,9 @@ dependencies = [ [[package]] name = "once_cell" -version = "1.17.1" +version = "1.17.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b7e5500299e16ebb147ae15a00a942af264cf3688f47923b8fc2cd5858f23ad3" +checksum = "9670a07f94779e00908f3e686eab508878ebb390ba6e604d3a284c00e8d0487b" [[package]] name = "onig" @@ -895,10 +882,14 @@ dependencies = [ ] [[package]] -name = "os_str_bytes" -version = "6.5.0" +name = "open" +version = "4.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ceedf44fb00f2d1984b0bc98102627ce622e083e49a5bacdb3e514fa4238e267" +checksum = "d16814a067484415fda653868c9be0ac5f2abd2ef5d951082a5f2fe1b3662944" +dependencies = [ + "is-wsl", + "pathdiff", +] [[package]] name = "parking_lot" @@ -956,29 +947,29 @@ checksum = "8835116a5c179084a830efb3adc117ab007512b535bc1a21c991d3b32a6b44dd" [[package]] name = "pin-project" -version = "1.0.12" +version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ad29a609b6bcd67fee905812e544992d216af9d755757c05ed2d0e15a74c6ecc" +checksum = "c95a7476719eab1e366eaf73d0260af3021184f18177925b07f54b30089ceead" dependencies = [ "pin-project-internal", ] [[package]] name = "pin-project-internal" -version = "1.0.12" +version = "1.1.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "069bdb1e05adc7a8990dce9cc75370895fbe4e3d58b9b73bf1aee56359344a55" +checksum = "39407670928234ebc5e6e580247dd567ad73a3578460c5990f9503df207e8f07" dependencies = [ "proc-macro2", "quote", - "syn 1.0.109", + "syn", ] [[package]] name = "pkg-config" -version = "0.3.26" +version = "0.3.27" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6ac9a59f73473f1b8d852421e59e64809f025994837ef743615c6d0c5b305160" +checksum = "26072860ba924cbfa98ea39c8c19b4dd6a4a25423dbdf219c1eca91aa0cf6964" [[package]] name = "plist" @@ -1008,34 +999,10 @@ dependencies = [ ] [[package]] -name = "proc-macro-error" -version = "1.0.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "da25490ff9892aab3fcf7c36f08cfb902dd3e71ca0f9f9517bea02a73a5ce38c" -dependencies = [ - "proc-macro-error-attr", - "proc-macro2", - "quote", - "syn 1.0.109", - "version_check", -] - -[[package]] -name = "proc-macro-error-attr" -version = "1.0.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a1be40180e52ecc98ad80b184934baf3d0d29f979574e439af5a55274b35f869" -dependencies = [ - "proc-macro2", - "quote", - "version_check", -] - -[[package]] name = "proc-macro2" -version = "1.0.56" +version = "1.0.59" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2b63bdb0cd06f1f4dedf69b254734f9b45af66e4a031e42a7480257d9898b435" +checksum = "6aeca18b86b413c660b781aa319e4e2648a3e6f9eadc9b47e9038e6fe9f3451b" dependencies = [ "unicode-ident", ] @@ -1077,9 +1044,9 @@ dependencies = [ [[package]] name = "quote" -version = "1.0.26" +version = "1.0.28" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4424af4bf778aae2051a77b60283332f386554255d722233d09fbfc7e30da2fc" +checksum = "1b9ab9c7eadfd8df19006f1cf1a4aed13540ed5cbc047010ece5826e10825488" dependencies = [ "proc-macro2", ] @@ -1117,13 +1084,13 @@ dependencies = [ [[package]] name = "regex" -version = "1.7.3" +version = "1.8.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8b1f693b24f6ac912f4893ef08244d70b6067480d2f1a46e950c9691e6749d1d" +checksum = "81ca098a9821bd52d6b24fd8b10bd081f47d39c22778cafaa75a2857a62c6390" dependencies = [ - "aho-corasick", + "aho-corasick 1.0.1", "memchr", - "regex-syntax", + "regex-syntax 0.7.2", ] [[package]] @@ -1139,10 +1106,16 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f162c6dd7b008981e4d40210aca20b4bd0f9b60ca9271061b07f78537722f2e1" [[package]] +name = "regex-syntax" +version = "0.7.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "436b050e76ed2903236f032a59761c1eb99e1b0aead2c257922771dab1fc8c78" + +[[package]] name = "rustix" -version = "0.37.12" +version = "0.37.19" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "722529a737f5a942fdbac3a46cee213053196737c5eaa3386d52e85b786f2659" +checksum = "acf8729d8542766f1b2cf77eb034d52f40d375bb8b615d0b147089946e16613d" dependencies = [ "bitflags", "errno", @@ -1181,19 +1154,19 @@ checksum = "d29ab0c6d3fc0ee92fe66e2d99f700eab17a8d57d1c1d3b748380fb20baa78cd" [[package]] name = "serde" -version = "1.0.160" +version = "1.0.163" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bb2f3770c8bce3bcda7e149193a069a0f4365bda1fa5cd88e03bca26afc1216c" +checksum = "2113ab51b87a539ae008b5c6c02dc020ffa39afd2d83cffcb3f4eb2722cebec2" [[package]] name = "serde_derive" -version = "1.0.160" +version = "1.0.163" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "291a097c63d8497e00160b166a967a4a79c64f3facdd01cbd7502231688d77df" +checksum = "8c805777e3930c8883389c602315a24224bcc738b63905ef87cd1420353ea93e" dependencies = [ "proc-macro2", "quote", - "syn 2.0.15", + "syn", ] [[package]] @@ -1266,20 +1239,9 @@ checksum = "73473c0e59e6d5812c5dfe2a064a6444949f089e20eec9a2e5506596494e4623" [[package]] name = "syn" -version = "1.0.109" +version = "2.0.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "72b64191b275b66ffe2469e8af2c1cfe3bafa67b529ead792a6d0160888b4237" -dependencies = [ - "proc-macro2", - "quote", - "unicode-ident", -] - -[[package]] -name = "syn" -version = "2.0.15" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a34fcf3e8b60f57e6a14301a2e916d323af98b0ea63c599441eec8558660c822" +checksum = "32d41677bcbe24c20c52e7c70b0d8db04134c5d1066bf98662e2871ad200ea3e" dependencies = [ "proc-macro2", "quote", @@ -1300,7 +1262,7 @@ dependencies = [ "once_cell", "onig", "plist", - "regex-syntax", + "regex-syntax 0.6.29", "serde", "serde_derive", "serde_json", @@ -1310,21 +1272,6 @@ dependencies = [ ] [[package]] -name = "termcolor" -version = "1.2.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "be55cf8942feac5c765c2c993422806843c9a9a45d4d5c407ad6dd2ea95eb9b6" -dependencies = [ - "winapi-util", -] - -[[package]] -name = "textwrap" -version = "0.16.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "222a222a5bfe1bba4a77b45ec488a741b3cb8872e5e499451fd7d0129c9c7c3d" - -[[package]] name = "thiserror" version = "1.0.40" source = "registry+https://github.com/rust-lang/crates.io-index" @@ -1341,7 +1288,7 @@ checksum = "f9456a42c5b0d803c8cd86e73dd7cc9edd429499f37a3550d286d5e86720569f" dependencies = [ "proc-macro2", "quote", - "syn 2.0.15", + "syn", ] [[package]] @@ -1367,9 +1314,9 @@ dependencies = [ [[package]] name = "time" -version = "0.3.20" +version = "0.3.21" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cd0cbfecb4d19b5ea75bb31ad904eb5b9fa13f21079c3b92017ebdf4999a5890" +checksum = "8f3403384eaacbca9923fa06940178ac13e4edb725486d70e8e15881d0c836cc" dependencies = [ "itoa", "serde", @@ -1379,24 +1326,24 @@ dependencies = [ [[package]] name = "time-core" -version = "0.1.0" +version = "0.1.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2e153e1f1acaef8acc537e68b44906d2db6436e2b35ac2c6b42640fff91f00fd" +checksum = "7300fbefb4dadc1af235a9cef3737cea692a9d97e1b9cbcd4ebdae6f8868e6fb" [[package]] name = "time-macros" -version = "0.2.8" +version = "0.2.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "fd80a657e71da814b8e5d60d3374fc6d35045062245d80224748ae522dd76f36" +checksum = "372950940a5f07bf38dbe211d7283c9e6d7327df53794992d293e534c733d09b" dependencies = [ "time-core", ] [[package]] name = "unicode-ident" -version = "1.0.8" +version = "1.0.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e5464a87b239f13a63a501f2701565754bae92d243d4bb7eb12f6d57d2269bf4" +checksum = "b15811caf2415fb889178633e7724bad2509101cde276048e013b9def5e51fa0" [[package]] name = "unicode-width" @@ -1405,16 +1352,21 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "c0edd1e5b14653f783770bce4a4dabb4a5108a5370a5f5d8cfe8710c361f6c8b" [[package]] -name = "utf8parse" -version = "0.2.1" +name = "unifont-bitmap" +version = "1.0.0+unifont-14.0.01" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "711b9620af191e0cdc7468a8d14e709c3dcdb115b36f838e601583af800a370a" +checksum = "836143529d8e332f71df6f8f42e311af5453d368828336c4711f798d4cd9469d" +dependencies = [ + "byteorder", + "flate2", + "once_cell", +] [[package]] -name = "version_check" -version = "0.9.4" +name = "utf8parse" +version = "0.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "49874b5167b65d7193b8aba1567f5c7d93d001cafc34600cee003eda787e483f" +checksum = "711b9620af191e0cdc7468a8d14e709c3dcdb115b36f838e601583af800a370a" [[package]] name = "walkdir" @@ -1434,9 +1386,9 @@ checksum = "9c8d87e72b64a3b4db28d11ce29237c246188f4f51057d65a7eab63b7987e423" [[package]] name = "wasm-bindgen" -version = "0.2.84" +version = "0.2.86" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "31f8dcbc21f30d9b8f2ea926ecb58f6b91192c17e9d33594b3df58b2007ca53b" +checksum = "5bba0e8cb82ba49ff4e229459ff22a191bbe9a1cb3a341610c9c33efc27ddf73" dependencies = [ "cfg-if", "wasm-bindgen-macro", @@ -1444,24 +1396,24 @@ dependencies = [ [[package]] name = "wasm-bindgen-backend" -version = "0.2.84" +version = "0.2.86" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "95ce90fd5bcc06af55a641a86428ee4229e44e07033963a2290a8e241607ccb9" +checksum = "19b04bc93f9d6bdee709f6bd2118f57dd6679cf1176a1af464fca3ab0d66d8fb" dependencies = [ "bumpalo", "log", "once_cell", "proc-macro2", "quote", - "syn 1.0.109", + "syn", "wasm-bindgen-shared", ] [[package]] name = "wasm-bindgen-macro" -version = "0.2.84" +version = "0.2.86" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4c21f77c0bedc37fd5dc21f897894a5ca01e7bb159884559461862ae90c0b4c5" +checksum = "14d6b024f1a526bb0234f52840389927257beb670610081360e5a03c5df9c258" dependencies = [ "quote", "wasm-bindgen-macro-support", @@ -1469,22 +1421,22 @@ dependencies = [ [[package]] name = "wasm-bindgen-macro-support" -version = "0.2.84" +version = "0.2.86" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2aff81306fcac3c7515ad4e177f521b5c9a15f2b08f4e32d823066102f35a5f6" +checksum = "e128beba882dd1eb6200e1dc92ae6c5dbaa4311aa7bb211ca035779e5efc39f8" dependencies = [ "proc-macro2", "quote", - "syn 1.0.109", + "syn", "wasm-bindgen-backend", "wasm-bindgen-shared", ] [[package]] name = "wasm-bindgen-shared" -version = "0.2.84" +version = "0.2.86" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0046fef7e28c3804e5e38bfa31ea2a0f73905319b677e57ebe37e49358989b5d" +checksum = "ed9d5b4305409d1fc9482fee2d7f9bcbf24b3972bf59817ef757e23982242a93" [[package]] name = "weezl" @@ -1681,9 +1633,9 @@ dependencies = [ [[package]] name = "zune-inflate" -version = "0.2.53" +version = "0.2.54" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "440a08fd59c6442e4b846ea9b10386c38307eae728b216e1ab2c305d1c9daaf8" +checksum = "73ab332fe2f6680068f3582b16a24f90ad7096d5d39b974d1c0aff0125116f02" dependencies = [ "simd-adler32", ] diff --git a/pkgs/tools/misc/codemov/default.nix b/pkgs/tools/misc/codemov/default.nix index f4a88a74bf946..dc3d708e30db4 100644 --- a/pkgs/tools/misc/codemov/default.nix +++ b/pkgs/tools/misc/codemov/default.nix @@ -10,13 +10,13 @@ rustPlatform.buildRustPackage { pname = "codemov"; - version = "unstable-2022-10-24"; + version = "unstable-2023-05-28"; src = fetchFromGitHub { owner = "sloganking"; repo = "codemov"; - rev = "d51e83246eafef32c3a3f54407fe49eb9801f5ea"; - hash = "sha256-4Z3XASFlALCnX1guDqhBfvGNZ0V1XSruJvvSm0xr/t4="; + rev = "ab4b287c5cdb64f8a1f378c54070fde5a1f3be5b"; + hash = "sha256-miW/s3Ox2Z5qyFZqAp/FqHhc5jC6s+4DzxlHQhzCc2w="; }; cargoLock = { diff --git a/pkgs/tools/misc/codevis/default.nix b/pkgs/tools/misc/codevis/default.nix index f1a1f74b746e4..464702432aa6f 100644 --- a/pkgs/tools/misc/codevis/default.nix +++ b/pkgs/tools/misc/codevis/default.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "codevis"; - version = "0.8.3"; + version = "0.8.4"; src = fetchFromGitHub { owner = "sloganking"; repo = "codevis"; rev = "v${version}"; - hash = "sha256-J2cF0ELH9E05ZXRIZQU5qhU1taIorORtqIzq61hTHxQ="; + hash = "sha256-LZ6NsoyEPUvgcVdbG7U2Vzuz/TLLraScvW97PocUNpU="; }; - cargoHash = "sha256-9QRd/UWlaRTtTOjtBa2TzrxCNf/sBbKT3GUnr1Spw+g="; + cargoHash = "sha256-sQKZJVnRs4IcBKmmaQDoJYBQtnuZW4aEICr6Xa8Flnk="; nativeBuildInputs = [ pkg-config @@ -26,11 +26,14 @@ rustPlatform.buildRustPackage rec { oniguruma ]; - RUSTONIG_SYSTEM_LIBONIG = true; + env = { + RUSTONIG_SYSTEM_LIBONIG = true; + }; meta = with lib; { description = "A tool to take all source code in a folder and render them to one image"; homepage = "https://github.com/sloganking/codevis"; + changelog = "https://github.com/sloganking/codevis/releases/tag/${src.rev}"; license = licenses.mit; maintainers = with maintainers; [ figsoda ]; }; diff --git a/pkgs/tools/misc/coreutils/default.nix b/pkgs/tools/misc/coreutils/default.nix index 8ecbe342034a7..beee4241c5418 100644 --- a/pkgs/tools/misc/coreutils/default.nix +++ b/pkgs/tools/misc/coreutils/default.nix @@ -32,18 +32,13 @@ let in stdenv.mkDerivation rec { pname = "coreutils" + (optionalString (!minimal) "-full"); - version = "9.1"; + version = "9.3"; src = fetchurl { url = "mirror://gnu/coreutils/coreutils-${version}.tar.xz"; - sha256 = "sha256-YaH0ENeLp+fzelpPUObRMgrKMzdUhKMlXt3xejhYBCM="; + hash = "sha256-rbz8/omSNbceh2jc8HzVMlILf1T5qAZIQ/jRmakEu6o="; }; - patches = lib.optionals (stdenv.isDarwin && stdenv.isx86_64) [ - # Workaround for https://debbugs.gnu.org/cgi/bugreport.cgi?bug=51433 - ./disable-seek-hole.patch - ]; - postPatch = '' # The test tends to fail on btrfs, f2fs and maybe other unusual filesystems. sed '2i echo Skipping dd sparse test && exit 77' -i ./tests/dd/sparse.sh diff --git a/pkgs/tools/misc/coreutils/disable-seek-hole.patch b/pkgs/tools/misc/coreutils/disable-seek-hole.patch deleted file mode 100644 index 89503287980d4..0000000000000 --- a/pkgs/tools/misc/coreutils/disable-seek-hole.patch +++ /dev/null @@ -1,43 +0,0 @@ -diff --git a/src/copy.c b/src/copy.c -index cb9018f93..2a4ccc061 100644 ---- a/src/copy.c -+++ b/src/copy.c -@@ -502,7 +502,7 @@ write_zeros (int fd, off_t n_bytes) - return true; - } - --#ifdef SEEK_HOLE -+#if 0 - /* Perform an efficient extent copy, if possible. This avoids - the overhead of detecting holes in hole-introducing/preserving - copy, and thus makes copying sparse files much more efficient. -@@ -1095,7 +1095,7 @@ infer_scantype (int fd, struct stat const *sb, - && ST_NBLOCKS (*sb) < sb->st_size / ST_NBLOCKSIZE)) - return PLAIN_SCANTYPE; - --#ifdef SEEK_HOLE -+#if 0 - scan_inference->ext_start = lseek (fd, 0, SEEK_DATA); - if (0 <= scan_inference->ext_start) - return LSEEK_SCANTYPE; -@@ -1377,7 +1377,7 @@ copy_reg (char const *src_name, char const *dst_name, - off_t n_read; - bool wrote_hole_at_eof = false; - if (! ( --#ifdef SEEK_HOLE -+#if 0 - scantype == LSEEK_SCANTYPE - ? lseek_copy (source_desc, dest_desc, buf, buf_size, hole_size, - scan_inference.ext_start, src_open_sb.st_size, -diff --git a/tests/seek-data-capable b/tests/seek-data-capable -index cc6372214..6e7a9ec1e 100644 ---- a/tests/seek-data-capable -+++ b/tests/seek-data-capable -@@ -1,5 +1,7 @@ - import sys, os, errno, platform - -+sys.exit(1) -+ - # Pass an _empty_ file - if len(sys.argv) != 2: - sys.exit(1) diff --git a/pkgs/tools/misc/dotacat/default.nix b/pkgs/tools/misc/dotacat/default.nix new file mode 100644 index 0000000000000..07dc66b116740 --- /dev/null +++ b/pkgs/tools/misc/dotacat/default.nix @@ -0,0 +1,26 @@ +{ lib +, rustPlatform +, fetchFromGitLab +}: + +rustPlatform.buildRustPackage { + pname = "dotacat"; + version = "v0.3.0"; + + src = fetchFromGitLab { + domain = "gitlab.scd31.com"; + owner = "stephen"; + repo = "dotacat"; + rev = "f3b7e7816bed6b84123e066c57cf4003d77a85f1"; + hash = "sha256-y+u9PO01W+IzBatGHZpgOD7cRKjdeuy4/VX7/V9cu3Q="; + }; + + cargoHash = "sha256-ilvsqwvfQejo453veSZ5VMP8XhL7NryrDh+rYJkXk30="; + + meta = with lib; { + description = "Like lolcat, but fast"; + homepage = "https://gitlab.scd31.com/stephen/dotacat"; + license = licenses.mit; + maintainers = with maintainers; [ traxys ]; + }; +} diff --git a/pkgs/tools/misc/eludris/default.nix b/pkgs/tools/misc/eludris/default.nix new file mode 100644 index 0000000000000..ac3ecc2e5a6cb --- /dev/null +++ b/pkgs/tools/misc/eludris/default.nix @@ -0,0 +1,34 @@ +{ lib +, fetchFromGitHub +, rustPlatform +, openssl +, pkg-config +, stdenv +, Security +}: + +rustPlatform.buildRustPackage rec { + pname = "eludris"; + version = "0.3.3"; + + src = fetchFromGitHub { + owner = "eludris"; + repo = pname; + rev = "v${version}"; + hash = "sha256-TVYgimkGUSITB3IaMlMd10PWomqyJRvONvJwiW85U4M="; + }; + + cargoHash = "sha256-5B9D19jFh5+eNTjiho22CFsn51nmwLry08zSDWvs1OU="; + + cargoBuildFlags = [ "-p eludris" ]; + cargoTestFlags = [ "-p eludris" ]; + buildInputs = [ openssl ] ++ lib.optionals stdenv.isDarwin [ Security ]; + nativeBuildInputs = [ pkg-config ]; + + meta = with lib; { + description = "A simple CLI to help you with setting up and managing your Eludris instance"; + homepage = "https://github.com/eludris/eludris/tree/main/cli"; + license = licenses.mit; + maintainers = with maintainers; [ ooliver1 ]; + }; +} diff --git a/pkgs/tools/misc/fclones/default.nix b/pkgs/tools/misc/fclones/default.nix index 4a22def16c2cb..6db99f6a5810c 100644 --- a/pkgs/tools/misc/fclones/default.nix +++ b/pkgs/tools/misc/fclones/default.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "fclones"; - version = "0.30.0"; + version = "0.31.0"; src = fetchFromGitHub { owner = "pkolaczk"; repo = pname; rev = "v${version}"; - sha256 = "sha256-eFWFXUARXy3VA53VPSZkJdw6ZvI+FtFnCCGHmCAdTto="; + hash = "sha256-VJU6qfcsV1VO/b8LQmIARGhkB8LrGcGsnfu1rUbK3rA="; }; - cargoHash = "sha256-C7DKwEMYdypfItflMOL7rjbAdXDRsXDNoPlc9j6aBRA="; + cargoHash = "sha256-KkJyB6Bdy+gjLHFgLML0rX8OF3/2yXO6XAwUOyvbQIE="; buildInputs = lib.optionals stdenv.isDarwin [ darwin.apple_sdk_11_0.frameworks.AppKit @@ -33,7 +33,8 @@ rustPlatform.buildRustPackage rec { meta = with lib; { description = "Efficient Duplicate File Finder and Remover"; homepage = "https://github.com/pkolaczk/fclones"; + changelog = "https://github.com/pkolaczk/fclones/releases/tag/${src.rev}"; license = licenses.mit; - maintainers = with maintainers; [ cyounkins msfjarvis ]; + maintainers = with maintainers; [ cyounkins figsoda msfjarvis ]; }; } diff --git a/pkgs/tools/misc/flashrom/default.nix b/pkgs/tools/misc/flashrom/default.nix index 3bd0405126318..6463595c28c8e 100644 --- a/pkgs/tools/misc/flashrom/default.nix +++ b/pkgs/tools/misc/flashrom/default.nix @@ -1,5 +1,4 @@ { fetchurl -, fetchpatch , stdenv , installShellFiles , lib @@ -22,7 +21,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ pkg-config installShellFiles ]; buildInputs = [ libftdi1 libusb1 ] - ++ lib.optional (!stdenv.isDarwin) [ pciutils ] + ++ lib.optionals (!stdenv.isDarwin) [ pciutils ] ++ lib.optional jlinkSupport libjaylink; postPatch = '' diff --git a/pkgs/tools/misc/fluent-bit/default.nix b/pkgs/tools/misc/fluent-bit/default.nix index cc91faa8ba206..14b9d21ad3e11 100644 --- a/pkgs/tools/misc/fluent-bit/default.nix +++ b/pkgs/tools/misc/fluent-bit/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "fluent-bit"; - version = "2.1.3"; + version = "2.1.4"; src = fetchFromGitHub { owner = "fluent"; repo = "fluent-bit"; rev = "v${version}"; - sha256 = "sha256-zNNqJbMVFNq82SKmlvU1rhjg549eH6rzrm2/mb1jM7E="; + sha256 = "sha256-WaIGTQiBVbLpSw17rBd1KbllkGEnSSXAPdO0CcbSNSI="; }; nativeBuildInputs = [ cmake flex bison ]; diff --git a/pkgs/tools/misc/gh-markdown-preview/default.nix b/pkgs/tools/misc/gh-markdown-preview/default.nix index 036e91b371ff9..6d148b31b86b1 100644 --- a/pkgs/tools/misc/gh-markdown-preview/default.nix +++ b/pkgs/tools/misc/gh-markdown-preview/default.nix @@ -7,13 +7,13 @@ buildGoModule rec { pname = "gh-markdown-preview"; - version = "1.4.0"; + version = "1.4.1"; src = fetchFromGitHub { owner = "yusukebe"; repo = "gh-markdown-preview"; rev = "v${version}"; - hash = "sha256-WAKGtwz0CNqx86YOeLKWwfJiFcRAm1+X5kJOfsPgtjY="; + hash = "sha256-Q+e3j+X/ZsLdkTBkuu028Rl4iw+oES2w6CDQiwN+CtU="; }; vendorHash = "sha256-O6Q9h5zcYAoKLjuzGu7f7UZY0Y5rL2INqFyJT2QZJ/E="; diff --git a/pkgs/tools/misc/grub/default.nix b/pkgs/tools/misc/grub/default.nix index 298fe7fd036fb..5d14551a860ab 100644 --- a/pkgs/tools/misc/grub/default.nix +++ b/pkgs/tools/misc/grub/default.nix @@ -341,6 +341,12 @@ stdenv.mkDerivation rec { url = "https://git.savannah.gnu.org/cgit/grub.git/patch/?id=1514678888595ef41a968a0c69b7ff769edd1e9c"; sha256 = "sha256-tgAEoAtaNKJjscjMFkXXiVn59Pa4c+NiQ3iVW6CMrpo="; }) + + # fix incompatibility with e2fsprogs 1.47+ + (fetchpatch { + url = "https://git.savannah.gnu.org/cgit/grub.git/patch/?id=7fd5feff97c4b1f446f8fcf6d37aca0c64e7c763"; + sha256 = "sha256-pejn1bJkC7XnT2ODaxeERHUrMOONoBV6w0wF2Z2ZKWI="; + }) ]; postPatch = if kbdcompSupport then '' diff --git a/pkgs/tools/misc/hunt/default.nix b/pkgs/tools/misc/hunt/default.nix index 6ccb197137dd2..da466e7b98a76 100644 --- a/pkgs/tools/misc/hunt/default.nix +++ b/pkgs/tools/misc/hunt/default.nix @@ -5,16 +5,16 @@ rustPlatform.buildRustPackage rec { pname = "hunt"; - version = "1.7.6"; + version = "2.0.0"; src = fetchFromGitHub { owner = "LyonSyonII"; repo = "hunt-rs"; rev = "v${version}"; - sha256 = "sha256-mNQY2vp4wNDhVqrFNVS/RBXVi9EMbTZ6pE0Z79dLUeM="; + sha256 = "sha256-TwxNVT2x9Y0jnLXiIquf/bQ31B+2VwFfh9EFbJQHpt4="; }; - cargoSha256 = "sha256-hjvJ9E5U6zGSWUXNDdu0GwUcd7uZeconfjiCSaEzZXU="; + cargoHash = "sha256-GU3AXZJ8yGFnj0SXRezS/YI6aS/lJowwo+GBBv5wNik="; meta = with lib; { description = "Simplified Find command made with Rust"; diff --git a/pkgs/tools/misc/hyfetch/default.nix b/pkgs/tools/misc/hyfetch/default.nix index 73df1d3a9796a..037a6e1231962 100644 --- a/pkgs/tools/misc/hyfetch/default.nix +++ b/pkgs/tools/misc/hyfetch/default.nix @@ -5,14 +5,14 @@ python3.pkgs.buildPythonApplication rec { pname = "hyfetch"; - version = "1.4.7"; + version = "1.4.9"; format = "setuptools"; src = fetchFromGitHub { owner = "hykilpikonna"; repo = "hyfetch"; rev = "refs/tags/${version}"; - hash = "sha256-DfPU42X9WCvOXf/BvFkfIM4yWQnunBgjjSfncaL6HPA="; + hash = "sha256-n+Aa6HrGB7aKrHLQijKNcUVGMYxuqYVrAAnHFPDYH40="; }; propagatedBuildInputs = with python3.pkgs; [ diff --git a/pkgs/tools/misc/hyperfine/default.nix b/pkgs/tools/misc/hyperfine/default.nix index 3cca1891147a6..e37033839c835 100644 --- a/pkgs/tools/misc/hyperfine/default.nix +++ b/pkgs/tools/misc/hyperfine/default.nix @@ -1,6 +1,6 @@ { lib , rustPlatform -, fetchCrate +, fetchFromGitHub , installShellFiles , stdenv , Security @@ -8,14 +8,16 @@ rustPlatform.buildRustPackage rec { pname = "hyperfine"; - version = "1.16.1"; + version = "1.17.0"; - src = fetchCrate { - inherit pname version; - sha256 = "sha256-OdOlFdhIYxBi3e94QAief0xZqVdr+wnbaPFSKJ20DNM="; + src = fetchFromGitHub { + owner = "sharkdp"; + repo = "hyperfine"; + rev = "v${version}"; + hash = "sha256-IUjOklkEiy/U2HjjMt1X1uSpIkTAYOPiPQ+70xvvxKA="; }; - cargoSha256 = "sha256-RgoMq52GkRbfhsBipMKhCSu3YQoOtDB/Fdg+9OPzGtk="; + cargoHash = "sha256-VjkcQueBODEADHdWOts2f3Zjar43hi0UXzVhvkK4o8I="; nativeBuildInputs = [ installShellFiles ]; buildInputs = lib.optional stdenv.isDarwin Security; diff --git a/pkgs/tools/misc/hyperledger-fabric/default.nix b/pkgs/tools/misc/hyperledger-fabric/default.nix index 9d13e3f1c3938..b00df9c90273e 100644 --- a/pkgs/tools/misc/hyperledger-fabric/default.nix +++ b/pkgs/tools/misc/hyperledger-fabric/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "hyperledger-fabric"; - version = "2.4.9"; + version = "2.5.1"; src = fetchFromGitHub { owner = "hyperledger"; repo = "fabric"; rev = "v${version}"; - hash = "sha256-tHchOki5xlu87onUCqdK/OQxJ6lcvhlUlLcQM6Fap+A="; + hash = "sha256-hZAGLSf/hez2pvfmaZJRD5b7GW3+exUXgLXUd2Awvpg="; }; vendorHash = null; diff --git a/pkgs/tools/misc/jfrog-cli/default.nix b/pkgs/tools/misc/jfrog-cli/default.nix index afedb179d56b2..edc2490702e48 100644 --- a/pkgs/tools/misc/jfrog-cli/default.nix +++ b/pkgs/tools/misc/jfrog-cli/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "jfrog-cli"; - version = "2.38.2"; + version = "2.38.5"; src = fetchFromGitHub { owner = "jfrog"; repo = "jfrog-cli"; rev = "refs/tags/v${version}"; - hash = "sha256-oCcpW4JP61w7TIWR11g/NaHri93cgGorEmRndZXZyE0="; + hash = "sha256-fd5YJCaqT78TjhC3CkX7+iPTxW278U7GTiXLH46L2m4="; }; - vendorHash = "sha256-voMKA7NpQHF4DIZP+vO/ZwlOcBNFwp3vThCM7s8RSpY="; + vendorHash = "sha256-6sUifqqryPrlwOFYPKp1VrgGE+xF/ELz8s7eLrMJnr4="; postInstall = '' # Name the output the same way as the original build script does diff --git a/pkgs/tools/misc/lavat/default.nix b/pkgs/tools/misc/lavat/default.nix new file mode 100644 index 0000000000000..f63bfdffa3357 --- /dev/null +++ b/pkgs/tools/misc/lavat/default.nix @@ -0,0 +1,41 @@ +{ lib +, stdenv +, fetchFromGitHub +, +}: +let + version = "2.0.0"; +in +stdenv.mkDerivation { + pname = "lavat"; + inherit version; + + src = fetchFromGitHub { + owner = "AngelJumbo"; + repo = "lavat"; + rev = "v${version}"; + hash = "sha256-xDjqKhwoaqCqo7tkpcEe2MBEpVTJUOpKtu7Fi9aPOPo="; + }; + + installPhase = '' + runHook preInstall + mkdir -p $out/bin + cp lavat $out/bin + runHook postInstall + ''; + + meta = with lib; { + description = "Lava lamp simulation in the terminal"; + longDescription = '' + Lavat puts ascii metaballs in your terminal to make it look a bit like a + lava lamp. + + Lavat contains various options, including those to change the color and + speed of the metaballs. For a full list, run `lavat -h` + ''; + maintainers = [ maintainers.minion3665 ]; + license = licenses.mit; + homepage = "https://github.com/AngelJumbo/lavat"; + platforms = platforms.all; + }; +} diff --git a/pkgs/tools/misc/limitcpu/default.nix b/pkgs/tools/misc/limitcpu/default.nix index b33f01dca90ac..e9649b4be6594 100644 --- a/pkgs/tools/misc/limitcpu/default.nix +++ b/pkgs/tools/misc/limitcpu/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "limitcpu"; - version = "2.9"; + version = "3.0"; src = fetchurl { url = "mirror://sourceforge/limitcpu/cpulimit-${version}.tar.gz"; - sha256 = "sha256-W7fbTscqArOy0SfViQaGTgE1iw81pvGQuAlwN4ovjPY="; + sha256 = "sha256-rS9BXrK72j6DqKLZGO9ekPUuvMb+5h6Uv5F7PoTrtJw="; }; buildFlags = with stdenv; [ ( diff --git a/pkgs/tools/misc/mcfly/default.nix b/pkgs/tools/misc/mcfly/default.nix index b51b83be7f42e..179dbe1dec3c6 100644 --- a/pkgs/tools/misc/mcfly/default.nix +++ b/pkgs/tools/misc/mcfly/default.nix @@ -2,13 +2,13 @@ rustPlatform.buildRustPackage rec { pname = "mcfly"; - version = "0.8.0"; + version = "0.8.1"; src = fetchFromGitHub { owner = "cantino"; repo = "mcfly"; rev = "v${version}"; - hash = "sha256-qzi21vouUhvpmqxQpYoCnHJDLRU8ZgCvewxblD2BGJc="; + hash = "sha256-9muBKJXsXiSxSmLRygGATEbwpiz6B8oTFQIkVMJMWAk="; }; postPatch = '' @@ -17,7 +17,7 @@ rustPlatform.buildRustPackage rec { substituteInPlace mcfly.fish --replace '(command which mcfly)' '${placeholder "out"}/bin/mcfly' ''; - cargoHash = "sha256-RHR+qmtnSrJOPkObRrE39EshmDVu53vEvw647ATk+os="; + cargoHash = "sha256-LhIAJ3JI7cp+vzEH5vthefgExPORF6Xnjj3cQkIkhSA="; meta = with lib; { homepage = "https://github.com/cantino/mcfly"; diff --git a/pkgs/tools/misc/mdslides/default.nix b/pkgs/tools/misc/mdslides/default.nix new file mode 100644 index 0000000000000..d9265cd7863bf --- /dev/null +++ b/pkgs/tools/misc/mdslides/default.nix @@ -0,0 +1,22 @@ +{ lib, fetchFromGitHub, python3Packages }: + +python3Packages.buildPythonApplication rec { + pname = "mdslides"; + version = "unstable-2022-12-15"; + + src = fetchFromGitHub { + owner = "dadoomer"; + repo = "markdown-slides"; + rev = "fd27dd09cf90f00093a393338e08953c8d65d68e"; + sha256 = "sha256-31ALsy1P/vfI+H6Onmg4TXLeKbVAQ1FlnFs4k6ZOgHQ="; + }; + + doCheck = false; + + meta = with lib; { + longDescription = "Using markdown, write simple but beautiful presentations with math, animations and media, which can be visualized in a web browser or exported to PDF."; + homepage = "https://github.com/dadoomer/markdown-slides"; + license = licenses.mit; + maintainers = [ maintainers.qjoly ]; + }; +} diff --git a/pkgs/tools/misc/mongodb-compass/default.nix b/pkgs/tools/misc/mongodb-compass/default.nix index 01c446dbbe453..a1b42d4e29346 100644 --- a/pkgs/tools/misc/mongodb-compass/default.nix +++ b/pkgs/tools/misc/mongodb-compass/default.nix @@ -33,7 +33,7 @@ xorg, }: let - version = "1.36.4"; + version = "1.37.0"; rpath = lib.makeLibraryPath [ alsa-lib @@ -82,7 +82,7 @@ let if stdenv.hostPlatform.system == "x86_64-linux" then fetchurl { url = "https://downloads.mongodb.com/compass/mongodb-compass_${version}_amd64.deb"; - sha256 = "sha256-GAg5zj2ETXdXVfVwNvf4VjRVEHePNWf28xMDsTyjiEs="; + sha256 = "sha256-SeglhwIKsxhmhA3rNcg6paSBwlB4a4Aiq9L2DFR9/d4="; } else throw "MongoDB compass is not supported on ${stdenv.hostPlatform.system}"; diff --git a/pkgs/tools/misc/notify/default.nix b/pkgs/tools/misc/notify/default.nix index 81e928a8dc7ae..8c8158174c762 100644 --- a/pkgs/tools/misc/notify/default.nix +++ b/pkgs/tools/misc/notify/default.nix @@ -6,16 +6,16 @@ buildGoModule rec { pname = "notify"; - version = "1.0.4"; + version = "1.0.5"; src = fetchFromGitHub { owner = "projectdiscovery"; repo = pname; rev = "v${version}"; - sha256 = "sha256-PZSt4mhon0JbFxeq5tOXb+xWKOoxT6rjRS1E3Jf2V3c="; + sha256 = "sha256-CXzxrY8G7Zh5xafuiIY9SsPkrYoSkMt15v2KLZBs0Jo="; }; - vendorSha256 = "sha256-MoGaIs2WmJk+E8pTljrahuaJ1VwYBhGBf1XGYVYOVt4="; + vendorSha256 = "sha256-tjaVEmOd/MJnDcS/mhvw95ZZ8giaUDTdDTyAMbjTckM="; modRoot = "."; subPackages = [ diff --git a/pkgs/tools/misc/octosql/default.nix b/pkgs/tools/misc/octosql/default.nix index ce7f536f43ca9..6f928fd61f34a 100644 --- a/pkgs/tools/misc/octosql/default.nix +++ b/pkgs/tools/misc/octosql/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "octosql"; - version = "0.12.1"; + version = "0.12.2"; src = fetchFromGitHub { owner = "cube2222"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ysp9DLpAvaZVZBWZAzwUuULtnO++M1/DAiYHR+4/7vA="; + sha256 = "sha256-jf40w5QkSTAgGu0JA4NeqsasN2TUf9vnKVw5zlZr8Mw="; }; - vendorHash = "sha256-JeVQz6NpekB4boRIxq2JJ3qYHTGj3K3+d5mxSblfvKs="; + vendorHash = "sha256-p/2UsvxxywQKtk/9wDa5fjS0z6xLLzDONuQ5AtnUonk="; ldflags = [ "-s" "-w" "-X github.com/cube2222/octosql/cmd.VERSION=${version}" ]; diff --git a/pkgs/tools/misc/panoply/default.nix b/pkgs/tools/misc/panoply/default.nix index f6334699351fb..379ec97cefa0d 100644 --- a/pkgs/tools/misc/panoply/default.nix +++ b/pkgs/tools/misc/panoply/default.nix @@ -2,11 +2,11 @@ stdenvNoCC.mkDerivation rec { pname = "panoply"; - version = "5.2.6"; + version = "5.2.7"; src = fetchurl { url = "https://www.giss.nasa.gov/tools/panoply/download/PanoplyJ-${version}.tgz"; - sha256 = "sha256-C/FMR276qx7yo7UaZ3a794B3mDy1/mrrZiua2eaIoxg="; + sha256 = "sha256-9mqamvUOMaCPnQQ9dhOawjp+GVFZfc59gb/Mx2XifW4="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/misc/powerline-go/default.nix b/pkgs/tools/misc/powerline-go/default.nix index 23cde8ba64e8e..970d7a0c39520 100644 --- a/pkgs/tools/misc/powerline-go/default.nix +++ b/pkgs/tools/misc/powerline-go/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "powerline-go"; - version = "1.23"; + version = "1.24"; src = fetchFromGitHub { owner = "justjanne"; repo = pname; rev = "v${version}"; - hash = "sha256-qEVsJsDvqcMVxLz81kNybEO/TwCvhi8E/laci8ry/dw="; + hash = "sha256-3IeyxAc+FRcVsL9AiVr6Jku5f5y3MTT9SXwVQW9MkNo="; }; vendorHash = "sha256-W7Lf9s689oJy4U5sQlkLt3INJwtvzU2pot3EFimp7Jw="; diff --git a/pkgs/tools/misc/pre-commit/default.nix b/pkgs/tools/misc/pre-commit/default.nix index f971037fc4733..43f75277086dc 100644 --- a/pkgs/tools/misc/pre-commit/default.nix +++ b/pkgs/tools/misc/pre-commit/default.nix @@ -101,6 +101,12 @@ buildPythonApplication rec { deactivate ''; + # Propagating dependencies leaks them through $PYTHONPATH which causes issues + # when used in nix-shell. + postFixup = '' + rm $out/nix-support/propagated-build-inputs + ''; + disabledTests = [ # ERROR: The install method you used for conda--probably either `pip install conda` # or `easy_install conda`--is not compatible with using conda as an application. diff --git a/pkgs/tools/misc/qt6ct/default.nix b/pkgs/tools/misc/qt6ct/default.nix new file mode 100644 index 0000000000000..cd7aa9de841f0 --- /dev/null +++ b/pkgs/tools/misc/qt6ct/default.nix @@ -0,0 +1,42 @@ +{ lib +, stdenv +, fetchFromGitHub +, qtbase +, qtsvg +, qtwayland +, qmake +, qttools +, wrapQtAppsHook +}: +let + inherit (lib) getDev; +in +stdenv.mkDerivation rec { + pname = "qt6ct"; + version = "0.8"; + + src = fetchFromGitHub { + owner = "trialuser02"; + repo = "qt6ct"; + rev = version; + sha256 = "BFE5aUgn3uFJWTgd4sUwP2L9RZwwwr5jVtAapA9vYbA="; + }; + + nativeBuildInputs = [ qmake qttools wrapQtAppsHook ]; + + buildInputs = [ qtbase qtsvg qtwayland ]; + + qmakeFlags = [ + "LRELEASE_EXECUTABLE=${getDev qttools}/bin/lrelease" + "PLUGINDIR=${placeholder "out"}/${qtbase.qtPluginPrefix}" + "LIBDIR=${placeholder "out"}/lib" + ]; + + meta = with lib; { + description = "Qt6 Configuration Tool"; + homepage = "https://github.com/trialuser02/qt6ct"; + platforms = platforms.linux; + license = licenses.bsd2; + maintainers = with maintainers; [ Flakebi Scrumplex ]; + }; +} diff --git a/pkgs/tools/misc/rauc/default.nix b/pkgs/tools/misc/rauc/default.nix index 3548ba6975ffb..c6bb154ab2295 100644 --- a/pkgs/tools/misc/rauc/default.nix +++ b/pkgs/tools/misc/rauc/default.nix @@ -40,7 +40,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; - nativeBuildInputs = [ pkg-config meson ninja ]; + nativeBuildInputs = [ pkg-config meson ninja glib ]; buildInputs = [ curl dbus glib json-glib openssl util-linux libnl systemd ]; diff --git a/pkgs/tools/misc/rshim-user-space/default.nix b/pkgs/tools/misc/rshim-user-space/default.nix index 605e6ff325f15..8007e0d904fef 100644 --- a/pkgs/tools/misc/rshim-user-space/default.nix +++ b/pkgs/tools/misc/rshim-user-space/default.nix @@ -11,13 +11,13 @@ stdenv.mkDerivation rec { pname = "rshim-user-space"; - version = "2.0.7"; + version = "2.0.8"; src = fetchFromGitHub { owner = "Mellanox"; repo = pname; rev = "rshim-${version}"; - hash = "sha256-Dyc16UrRxbC9jRNVZ/sCgidY2hSIX0PrWmHf68x07nE="; + hash = "sha256-2r8zsmce1w7f4/NhqJqgb8bZlLLSxXuQVAGKL1PtvcM="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/misc/rtx/default.nix b/pkgs/tools/misc/rtx/default.nix new file mode 100644 index 0000000000000..040c76a1f9918 --- /dev/null +++ b/pkgs/tools/misc/rtx/default.nix @@ -0,0 +1,63 @@ +{ lib +, rustPlatform +, fetchFromGitHub +, installShellFiles +, stdenv +, coreutils +, bash +, direnv +, Security +}: + +rustPlatform.buildRustPackage rec { + pname = "rtx"; + version = "1.32.0"; + + src = fetchFromGitHub { + owner = "jdxcode"; + repo = "rtx"; + rev = "v${version}"; + sha256 = "sha256-1TaBxVu/aNZ3iZWlo1Gn9pFK5j/vKsx6yT+eAPkmYSw="; + }; + + cargoSha256 = "sha256-wgTckF1IqnTa6gYVYHDNLdyx2w2urYG5Qqkq1iyuA3M="; + + nativeBuildInputs = [ installShellFiles ]; + buildInputs = lib.optionals stdenv.isDarwin [ Security ]; + + postPatch = '' + patchShebangs --build ./test/data/plugins/**/bin/* ./src/fake_asdf.rs ./src/cli/reshim.rs + + substituteInPlace ./src/env_diff.rs \ + --replace '"bash"' '"${bash}/bin/bash"' + + substituteInPlace ./src/cli/direnv/exec.rs \ + --replace '"env"' '"${coreutils}/bin/env"' \ + --replace 'cmd!("direnv"' 'cmd!("${direnv}/bin/direnv"' + ''; + + checkFlags = [ + # Requires .git directory to be present + "--skip=cli::plugins::ls::tests::test_plugin_list_urls" + ]; + cargoTestFlags = [ "--all-features" ]; + # some tests access the same folders, don't test in parallel to avoid race conditions + dontUseCargoParallelTests = true; + + postInstall = '' + installManPage ./man/man1/rtx.1 + + installShellCompletion \ + --bash ./completions/rtx.bash \ + --fish ./completions/rtx.fish \ + --zsh ./completions/_rtx + ''; + + meta = { + homepage = "https://github.com/jdxcode/rtx"; + description = "Polyglot runtime manager (asdf rust clone)"; + changelog = "https://github.com/jdxcode/rtx/releases/tag/v${version}"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ konradmalik ]; + }; +} diff --git a/pkgs/tools/misc/rustypaste-cli/default.nix b/pkgs/tools/misc/rustypaste-cli/default.nix new file mode 100644 index 0000000000000..e82465afcd477 --- /dev/null +++ b/pkgs/tools/misc/rustypaste-cli/default.nix @@ -0,0 +1,33 @@ +{ lib +, rustPlatform +, fetchFromGitHub +, stdenv +, darwin +}: + +rustPlatform.buildRustPackage rec { + pname = "rustypaste-cli"; + version = "0.4.0"; + + src = fetchFromGitHub { + owner = "orhun"; + repo = "rustypaste-cli"; + rev = "v${version}"; + hash = "sha256-Jl7fytDIW6MLY6VX7rDuX9PcZaIqENQbUTMUJKCa8Mg="; + }; + + cargoHash = "sha256-hICwrgzNpyYmNW1gEKgTsSjWyqCaOHc4X37O0R2oSzY="; + + buildInputs = lib.optionals stdenv.isDarwin [ + darwin.apple_sdk.frameworks.Security + ]; + + meta = with lib; { + description = "A CLI tool for rustypaste"; + homepage = "https://github.com/orhun/rustypaste-cli"; + changelog = "https://github.com/orhun/rustypaste-cli/blob/${src.rev}/CHANGELOG.md"; + license = licenses.mit; + maintainers = with maintainers; [ figsoda ]; + mainProgram = "rpaste"; + }; +} diff --git a/pkgs/tools/misc/sagoin/default.nix b/pkgs/tools/misc/sagoin/default.nix index 704267da2793f..682b2cbb56f57 100644 --- a/pkgs/tools/misc/sagoin/default.nix +++ b/pkgs/tools/misc/sagoin/default.nix @@ -8,16 +8,16 @@ rustPlatform.buildRustPackage rec { pname = "sagoin"; - version = "0.2.1"; + version = "0.2.2"; src = fetchFromGitHub { owner = "figsoda"; repo = pname; rev = "v${version}"; - sha256 = "sha256-CSkij/3WCeEq26Uhlrgdf503hGf0OwSUQNmx5mspD08="; + hash = "sha256-bhBC7Cblw8vmP4BalYv2DMRQWPK2AELb8Ia9PSeWcXE="; }; - cargoSha256 = "sha256-Zos3ox6VQv9t1KoblAJhVblTOQOn9rJyvaXK48Y/K1c="; + cargoHash = "sha256-1XcI2LUo6xOs6bJDXKVDqMangH2dq2E6fNokuSDzpK0="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/tools/misc/shell_gpt/default.nix b/pkgs/tools/misc/shell_gpt/default.nix index b43a6fd9d1658..03fdefb7a526d 100644 --- a/pkgs/tools/misc/shell_gpt/default.nix +++ b/pkgs/tools/misc/shell_gpt/default.nix @@ -6,12 +6,12 @@ python3.pkgs.buildPythonApplication rec { pname = "shell_gpt"; - version = "0.9.0"; + version = "0.9.1"; format = "pyproject"; src = fetchPypi { inherit pname version; - sha256 = "sha256-KzW9yI1TGG2hFKeXHFqqYCLw/PB9+lJoTgyWrXxCHpo="; + sha256 = "sha256-k57oPqUpBuqoJFJ2JU3O4d4ESqb1DqJam/L+lJgBWIQ="; }; nativeBuildInputs = with python3.pkgs; [ diff --git a/pkgs/tools/misc/shopware-cli/default.nix b/pkgs/tools/misc/shopware-cli/default.nix index 59f8af85e9dd6..e30ea8e5526ec 100644 --- a/pkgs/tools/misc/shopware-cli/default.nix +++ b/pkgs/tools/misc/shopware-cli/default.nix @@ -8,17 +8,17 @@ buildGoModule rec { pname = "shopware-cli"; - version = "0.1.73"; + version = "0.1.78"; src = fetchFromGitHub { repo = "shopware-cli"; owner = "FriendsOfShopware"; rev = version; - hash = "sha256-yjWLWTM6ybrNUMTMHQ3oHXTEp8MGI/qH7Y+gft5RXY8="; + hash = "sha256-IJOT4hnh/ufF8x9EXAJ6TaXVD3qoyv+NqDXqH9XB9C4="; }; nativeBuildInputs = [ installShellFiles makeWrapper ]; - vendorHash = "sha256-eaD2vdiAmP2/cMtc1wN0qaMBRvrEckGBf0p5MI1T4gI="; + vendorHash = "sha256-MoqLxEPxApxMyGKGiPfdehdmKacpwL0BqRP7rEC0TdY="; postInstall = '' export HOME="$(mktemp -d)" diff --git a/pkgs/tools/misc/sqlite3-to-mysql/default.nix b/pkgs/tools/misc/sqlite3-to-mysql/default.nix index 176f97275f428..0a3806415bf79 100644 --- a/pkgs/tools/misc/sqlite3-to-mysql/default.nix +++ b/pkgs/tools/misc/sqlite3-to-mysql/default.nix @@ -1,22 +1,47 @@ { lib , fetchFromGitHub -, python3Packages +, python3 , nixosTests +, testers +, sqlite3-to-mysql +, fetchPypi }: -python3Packages.buildPythonApplication rec { +let + py = python3.override { + packageOverrides = self: super: { + # sqlite3-to-mysql is incompatible with versions > 1.4.44 of sqlalchemy + sqlalchemy = super.sqlalchemy.overridePythonAttrs (oldAttrs: rec { + version = "1.4.44"; + format = "setuptools"; + src = fetchPypi { + pname = "SQLAlchemy"; + inherit version; + hash = "sha256-LdpflnGa6Js+wPG3lpjYbrmuyx1U6ZCrs/3ZLAS0apA="; + }; + }); + }; + self = py; + }; + +in +with py.pkgs; buildPythonApplication rec { pname = "sqlite3-to-mysql"; - version = "1.4.16"; - format = "setuptools"; + version = "1.4.19"; + format = "pyproject"; src = fetchFromGitHub { owner = "techouse"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-Fxt1zOyEnBuMkCLCABfijo0514NbFocdsjrQU43qVhY="; + hash = "sha256-gtXwDLHl5f1sXLm+b8l08bY/XJkN+zVtd7m45K0CAYY="; }; - propagatedBuildInputs = with python3Packages; [ + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ click mysql-connector pytimeparse @@ -38,9 +63,12 @@ python3Packages.buildPythonApplication rec { # run package tests as a separate nixos test passthru.tests = { nixosTest = nixosTests.sqlite3-to-mysql; + version = testers.testVersion { + package = sqlite3-to-mysql; + command = "sqlite3mysql --version"; + }; }; - meta = with lib; { description = "A simple Python tool to transfer data from SQLite 3 to MySQL"; homepage = "https://github.com/techouse/sqlite3-to-mysql"; diff --git a/pkgs/tools/misc/starship/default.nix b/pkgs/tools/misc/starship/default.nix index d343ad9917c9f..1100a62b09474 100644 --- a/pkgs/tools/misc/starship/default.nix +++ b/pkgs/tools/misc/starship/default.nix @@ -4,7 +4,6 @@ , rustPlatform , installShellFiles , cmake -, fetchpatch , git , nixosTests , Security @@ -14,13 +13,13 @@ rustPlatform.buildRustPackage rec { pname = "starship"; - version = "1.14.2"; + version = "1.15.0"; src = fetchFromGitHub { owner = "starship"; repo = pname; rev = "v${version}"; - hash = "sha256-t+Ur6QmemMz6WAZnii7f2O+9R7hPp+5oej4PuaifznE="; + hash = "sha256-aINiWzkt4sAWgcGdkHTb2KRMh2z+LiOhDdTJbzbXwR4="; }; nativeBuildInputs = [ installShellFiles cmake ]; @@ -36,7 +35,7 @@ rustPlatform.buildRustPackage rec { --zsh <($out/bin/starship completions zsh) ''; - cargoHash = "sha256-NSUId0CXTRF1Qqo9XPDgxY2vMyMBuJtJYGGuQ0HHk90="; + cargoHash = "sha256-XT2kgiITtG1FNyztNvos/r01pvdF1xPhHA4+YhFGFEU="; nativeCheckInputs = [ git ]; diff --git a/pkgs/tools/misc/steampipe/default.nix b/pkgs/tools/misc/steampipe/default.nix index 3331e11987eae..0b4bfb48091c0 100644 --- a/pkgs/tools/misc/steampipe/default.nix +++ b/pkgs/tools/misc/steampipe/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "steampipe"; - version = "0.20.2"; + version = "0.20.5"; src = fetchFromGitHub { owner = "turbot"; repo = "steampipe"; rev = "v${version}"; - sha256 = "sha256-enjInsu1gaztdUr8z7GgBnL1pKnHoAtST4qGzQeBAhs="; + sha256 = "sha256-hpI667LNXwLhA/MgnlfLc/jk88ec94faV8hLnlAJ6ew="; }; vendorHash = "sha256-FWLEuSdhXSQJMd4PiiPTFC8aXkIlQ9LhL6/Dq7LkPPc="; diff --git a/pkgs/tools/misc/trackma/default.nix b/pkgs/tools/misc/trackma/default.nix index 855585dde3f81..17bd117b22e96 100644 --- a/pkgs/tools/misc/trackma/default.nix +++ b/pkgs/tools/misc/trackma/default.nix @@ -76,6 +76,6 @@ python3.pkgs.buildPythonApplication rec { description = "Open multi-site list manager for Unix-like systems (ex-wMAL)"; license = licenses.gpl3Plus; platforms = platforms.linux; - maintainers = with maintainers; [ WeebSorceress ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/tools/misc/unparam/default.nix b/pkgs/tools/misc/unparam/default.nix index 5840a0d82be8a..30bb408ffae1d 100644 --- a/pkgs/tools/misc/unparam/default.nix +++ b/pkgs/tools/misc/unparam/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "unparam"; - version = "unstable-2021-12-14"; + version = "unstable-2023-03-12"; src = fetchFromGitHub { owner = "mvdan"; repo = "unparam"; - rev = "d0ef000c54e5fbf955d67422b0495b9f29b354da"; - sha256 = "sha256-fH/LcshpOk+UFfQ5dE2eHi6Oi5cm8umeXoyHJvhpAbE="; + rev = "e84e2d14e3b88193890ff95d72ecb81312f36589"; + sha256 = "sha256-kbEdOqX/p/FrNfWQ2WjXX+lERprSV2EI9l+kapHuFi4="; }; - vendorSha256 = "sha256-pfIxWvJYAus4DShTcBI1bwn/Q2c5qWvCwPCwfUsv8c0="; + vendorSha256 = "sha256-gEZFAMcr1okqG2IXcS3hDzZKMINohd2JzxezGbzyeBE="; subPackages = [ "." ]; diff --git a/pkgs/tools/misc/vtm/default.nix b/pkgs/tools/misc/vtm/default.nix index 35e4e5b674187..9dd4f07faa238 100644 --- a/pkgs/tools/misc/vtm/default.nix +++ b/pkgs/tools/misc/vtm/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "vtm"; - version = "0.9.9k"; + version = "0.9.9m"; src = fetchFromGitHub { owner = "netxs-group"; repo = "vtm"; rev = "v${version}"; - sha256 = "sha256-vmgjonMjhVEfsujWUuX+50NPAzgIfJADp8qjnDmfV1E="; + sha256 = "sha256-l9EMoUUM4pH+YwzdrTXhBawiW1l2OzX9ou18U5kM36c="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/tools/misc/whatsapp-chat-exporter/default.nix b/pkgs/tools/misc/whatsapp-chat-exporter/default.nix new file mode 100644 index 0000000000000..e6d2f7af0b7ba --- /dev/null +++ b/pkgs/tools/misc/whatsapp-chat-exporter/default.nix @@ -0,0 +1,38 @@ +{ lib +, python3Packages +, fetchFromGitHub +}: + +python3Packages.buildPythonApplication rec { + pname = "whatsapp-chat-exporter"; + version = "0.9.1"; + format = "setuptools"; + + src = fetchFromGitHub { + owner = "KnugiHK"; + repo = "Whatsapp-Chat-Exporter"; + rev = "refs/tags/${version}"; + hash = "sha256-DvCYMfR9GgdP9rVpcoIR5nG9b4ToOBMG1a9OTvjfIiU="; + }; + + propagatedBuildInputs = with python3Packages; [ + bleach + jinja2 + pycryptodome + javaobj-py3 + ]; + + meta = with lib; { + homepage = "https://github.com/KnugiHK/Whatsapp-Chat-Exporter"; + description = "WhatsApp database parser"; + changelog = "https://github.com/KnugiHK/Whatsapp-Chat-Exporter/releases/tag/${version}"; + longDescription = '' + A customizable Android and iPhone WhatsApp database parser that will give + you the history of your WhatsApp conversations inHTML and JSON. Android + Backup Crypt12, Crypt14 and Crypt15 supported. + ''; + license = licenses.mit; + mainProgram = "wtsexporter"; + maintainers = with maintainers; [ bbenno ]; + }; +} diff --git a/pkgs/tools/misc/xcp/default.nix b/pkgs/tools/misc/xcp/default.nix index 7bf9860e7eda6..b8e93c3f7b67a 100644 --- a/pkgs/tools/misc/xcp/default.nix +++ b/pkgs/tools/misc/xcp/default.nix @@ -2,19 +2,19 @@ rustPlatform.buildRustPackage rec { pname = "xcp"; - version = "0.9.4"; + version = "0.10.0"; src = fetchFromGitHub { owner = "tarka"; repo = pname; rev = "v${version}"; - sha256 = "sha256-MvtMgdlMVMp2qWN+EbAKZwBwW0TA8aivlJY8KZm+7jM="; + sha256 = "sha256-DrB7eVo7nFsp2jGVygbBvj7zOztJ8jDkLODRFfxXhjY="; }; # no such file or directory errors doCheck = false; - cargoHash = "sha256-vxfoJnyG0wWgkcZpQYiKkQaHl01VDuQ0kA26MXVCgY8="; + cargoHash = "sha256-O16aY+s27LBMcbefz4ug5+EuGAAiNsD7D0nv5KPg+Us="; meta = with lib; { description = "An extended cp(1)"; diff --git a/pkgs/tools/misc/yad/default.nix b/pkgs/tools/misc/yad/default.nix index 4b6d184839292..9bbb955f1a1bc 100644 --- a/pkgs/tools/misc/yad/default.nix +++ b/pkgs/tools/misc/yad/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { pname = "yad"; - version = "12.3"; + version = "13.0"; src = fetchFromGitHub { owner = "v1cont"; repo = "yad"; rev = "v${version}"; - sha256 = "sha256-VaeA83Wk5N3uLf8Eb606w3KPwV/3be5D39wW2JuSdp0="; + sha256 = "sha256-iYAhiaGfC9/OQ5HrSjX2fhpbwdZun6sxyw8o+8svcvY="; }; configureFlags = [ diff --git a/pkgs/tools/networking/brook/default.nix b/pkgs/tools/networking/brook/default.nix index 1cc32a2b81946..b507aecb28675 100644 --- a/pkgs/tools/networking/brook/default.nix +++ b/pkgs/tools/networking/brook/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "brook"; - version = "20230601"; + version = "20230606"; src = fetchFromGitHub { owner = "txthinking"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Y7uaLKxDu7C8ySfTplKWdXBJdUhUXVeVPQJqSzvvywY="; + sha256 = "sha256-F4muuU696YbKcPkpD1LAeyD8ghQAe65UdqV5wS1fATI="; }; vendorHash = "sha256-uKlO1x5sGM8B1htmvRt9kND7tuH36iLN/Mev77vwZ6M="; diff --git a/pkgs/tools/networking/burpsuite/default.nix b/pkgs/tools/networking/burpsuite/default.nix index 53ed53c0089b8..922133daa814d 100644 --- a/pkgs/tools/networking/burpsuite/default.nix +++ b/pkgs/tools/networking/burpsuite/default.nix @@ -1,6 +1,6 @@ { lib, fetchurl, jdk, buildFHSEnv, unzip, makeDesktopItem }: let - version = "2023.4.4"; + version = "2023.5.2"; src = fetchurl { name = "burpsuite.jar"; @@ -8,7 +8,7 @@ let "https://portswigger.net/burp/releases/download?productId=100&version=${version}&type=Jar" "https://web.archive.org/web/https://portswigger.net/burp/releases/download?productId=100&version=${version}&type=Jar" ]; - sha256 = "fac29bfd58be87b3c77091befede82b417aca3145e66c5d9ff02ca4939f420a3"; + sha256 = "0afcea8603a57e531792764a37e16e7c90634cca06eb51e6e8b031f0283d84ce"; }; name = "burpsuite-${version}"; diff --git a/pkgs/tools/networking/clash-meta/default.nix b/pkgs/tools/networking/clash-meta/default.nix index 35a07133b44e6..804e2f44b442c 100644 --- a/pkgs/tools/networking/clash-meta/default.nix +++ b/pkgs/tools/networking/clash-meta/default.nix @@ -4,7 +4,7 @@ }: buildGoModule rec { pname = "clash-meta"; - version = "1.14.4"; + version = "1.14.5"; src = fetchFromGitHub { owner = "MetaCubeX"; @@ -14,10 +14,10 @@ buildGoModule rec { postFetch = '' rm -f $out/.github/workflows/{Delete,delete}.yml ''; - hash = "sha256-HEJQaNFKcmR7KtXsYs2h1KpRZJfQljYjMUBMdqg7gRU="; + hash = "sha256-4jhe+zhcRACcwwPWFd5oW8eIKTpPWfz0z5cnA9E8Wkc="; }; - vendorHash = "sha256-jvl4dAP0EOl9p/3LPNLUqzg8H/mP7AKaI+lJ6ROo/1k="; + vendorHash = "sha256-VcT9dda5E9IMrDB/3QWBGWiNxGAEM2yKDbJwhGpN8og="; # Do not build testing suit excludedPackages = [ "./test" ]; diff --git a/pkgs/tools/networking/curl/default.nix b/pkgs/tools/networking/curl/default.nix index 9bdf18c44fc68..5ff2aef0b8339 100644 --- a/pkgs/tools/networking/curl/default.nix +++ b/pkgs/tools/networking/curl/default.nix @@ -47,14 +47,14 @@ assert !((lib.count (x: x) [ gnutlsSupport opensslSupport wolfsslSupport rustlsS stdenv.mkDerivation (finalAttrs: { pname = "curl"; - version = "8.0.1"; + version = "8.1.1"; src = fetchurl { urls = [ "https://curl.haxx.se/download/curl-${finalAttrs.version}.tar.bz2" "https://github.com/curl/curl/releases/download/curl-${finalAttrs.version}/curl-${finalAttrs.version}.tar.bz2" ]; - hash = "sha256-m2selrdI0EuWh4a2vfQHqlx1q1Oj03wcjIHNtzZVXM8="; + hash = "sha256-UdKvcieZE7XUyrH+Hzi5RM9wkEyIvuJGtb1XWETnA1o="; }; patches = [ diff --git a/pkgs/tools/networking/curlie/bump-golang-x-sys.patch b/pkgs/tools/networking/curlie/bump-golang-x-sys.patch index 100506413508f..0de9769d22168 100644 --- a/pkgs/tools/networking/curlie/bump-golang-x-sys.patch +++ b/pkgs/tools/networking/curlie/bump-golang-x-sys.patch @@ -1,13 +1,37 @@ diff --git a/go.mod b/go.mod -index 660463a..5249458 100644 +index bebd23f..2ad575f 100644 --- a/go.mod +++ b/go.mod -@@ -2,7 +2,7 @@ module github.com/rs/curlie - +@@ -1,8 +1,8 @@ + module github.com/rs/curlie + require ( - golang.org/x/crypto v0.0.0-20180524125353-159ae71589f3 -- golang.org/x/sys v0.0.0-20191026070338-33540a1f6037 +- golang.org/x/crypto v0.1.0 +- golang.org/x/sys v0.1.0 ++ golang.org/x/crypto v0.0.0-20180524125353-159ae71589f3 + golang.org/x/sys v0.0.0-20211110154304-99a53858aa08 ) - + go 1.13 +diff --git a/go.sum b/go.sum +index 6b2e5c3..452bcf9 100644 +--- a/go.sum ++++ b/go.sum +@@ -1,4 +1,6 @@ + github.com/yuin/goldmark v1.4.13/go.mod h1:6yULJ656Px+3vBD8DxQVa3kxgyrAnzto9xy5taEt/CY= ++golang.org/x/crypto v0.0.0-20180524125353-159ae71589f3 h1:mPCVkWhSH1DSDQg4ZwAFYMo/+evpqK1WzBt33b9TXRE= ++golang.org/x/crypto v0.0.0-20180524125353-159ae71589f3/go.mod h1:6SG95UA2DQfeDnfUPMdvaQW0Q7yPrPDi9nlGo2tz2b4= + golang.org/x/crypto v0.0.0-20190308221718-c2843e01d9a2/go.mod h1:djNgcEr1/C05ACkg1iLfiJU5Ep61QUkGW8qpdssI0+w= + golang.org/x/crypto v0.0.0-20210921155107-089bfa567519/go.mod h1:GvvjBRRGRdwPK5ydBHafDWAxML/pGHZbMvKqRZ5+Abc= + golang.org/x/crypto v0.1.0 h1:MDRAIl0xIo9Io2xV565hzXHw3zVseKrJKodhohM5CjU= +@@ -10,6 +12,8 @@ golang.org/x/net v0.0.0-20220722155237-a158d28d115b/go.mod h1:XRhObCWvk6IyKnWLug + golang.org/x/net v0.1.0/go.mod h1:Cx3nUiGt4eDBEyega/BKRp+/AlGL8hYe7U9odMt2Cco= + golang.org/x/sync v0.0.0-20190423024810-112230192c58/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= + golang.org/x/sync v0.0.0-20220722155255-886fb9371eb4/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= ++golang.org/x/sys v0.0.0-20211110154304-99a53858aa08 h1:WecRHqgE09JBkh/584XIE6PMz5KKE/vER4izNUi30AQ= ++golang.org/x/sys v0.0.0-20211110154304-99a53858aa08/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= + golang.org/x/sys v0.0.0-20190215142949-d0b11bdaac8a/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY= + golang.org/x/sys v0.0.0-20201119102817-f84b799fce68/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= + golang.org/x/sys v0.0.0-20210615035016-665e8c7367d1/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= +-- +2.40.1 diff --git a/pkgs/tools/networking/curlie/default.nix b/pkgs/tools/networking/curlie/default.nix index e8e0980523b7e..7a5e8da3c9fb2 100644 --- a/pkgs/tools/networking/curlie/default.nix +++ b/pkgs/tools/networking/curlie/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "curlie"; - version = "1.6.9"; + version = "1.7.1"; src = fetchFromGitHub { owner = "rs"; repo = pname; rev = "v${version}"; - hash = "sha256-3EKxuEpFm+lp2myMfymYYY9boSXGOF2iAdjtGKnjJK0="; + hash = "sha256-EHSFr05VXJuOjUnweEJngdnfSUZUF1HsO28ZBSLGlvE="; }; patches = [ diff --git a/pkgs/tools/networking/dae/default.nix b/pkgs/tools/networking/dae/default.nix index 577ec553ca420..fdb1583530fa7 100644 --- a/pkgs/tools/networking/dae/default.nix +++ b/pkgs/tools/networking/dae/default.nix @@ -5,17 +5,17 @@ }: buildGoModule rec { pname = "dae"; - version = "0.1.9patch1"; + version = "0.1.10.p1"; src = fetchFromGitHub { owner = "daeuniverse"; repo = pname; rev = "v${version}"; - sha256 = "sha256-wCcwHXKjSve4SjgRm8DaLrPOumFAiS2Nw1mbOZwEUnk="; + sha256 = "sha256-pURL2K05cp7/CUkC/rAJAhrQQWfalid53LDDGuQShQ4="; fetchSubmodules = true; }; - vendorHash = "sha256-4LfnU3UCNhMBloSCUUXrseiUT6esqWFngrGIFjpAjUc="; + vendorHash = "sha256-i0z0O0qpirlCsxZNMX2ICLPZ/k6ykyKC21+cg+butEA="; proxyVendor = true; diff --git a/pkgs/tools/networking/dd-agent/datadog-agent.nix b/pkgs/tools/networking/dd-agent/datadog-agent.nix index b3552a28e531d..f8678bc9ef9cc 100644 --- a/pkgs/tools/networking/dd-agent/datadog-agent.nix +++ b/pkgs/tools/networking/dd-agent/datadog-agent.nix @@ -1,7 +1,7 @@ { lib , stdenv , cmake -, buildGo118Module +, buildGoModule , makeWrapper , fetchFromGitHub , pythonPackages @@ -35,7 +35,7 @@ let cmakeFlags = ["-DBUILD_DEMO=OFF" "-DDISABLE_PYTHON2=ON"]; }; -in buildGo118Module rec { +in buildGoModule rec { pname = "datadog-agent"; inherit src version; diff --git a/pkgs/tools/networking/frp/default.nix b/pkgs/tools/networking/frp/default.nix index 6b09adea63b62..658d9fb9846d8 100644 --- a/pkgs/tools/networking/frp/default.nix +++ b/pkgs/tools/networking/frp/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "frp"; - version = "0.48.0"; + version = "0.49.0"; src = fetchFromGitHub { owner = "fatedier"; repo = pname; rev = "v${version}"; - sha256 = "sha256-e9Qof+HxSJHzAUbLb+w5oWPTOslTPxnC8BVAmtMQGlE="; + sha256 = "sha256-6bBLgMh9Hf+UWYcF6oypK62VmeZwXsP7wz5PizeiRcc="; }; - vendorHash = "sha256-DhzirX+AGe8dE62M0hiE5SlWK8HqhNN0MMk9i2Ntrs8="; + vendorHash = "sha256-zQMm3qOBDJuL4w/BDGKH3DbfAFn0pwuvjltYnuxxvzk="; doCheck = false; diff --git a/pkgs/tools/networking/gobgp/default.nix b/pkgs/tools/networking/gobgp/default.nix index cf56c48be8a88..14a5fb4044f22 100644 --- a/pkgs/tools/networking/gobgp/default.nix +++ b/pkgs/tools/networking/gobgp/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "gobgp"; - version = "3.14.0"; + version = "3.15.0"; src = fetchFromGitHub { owner = "osrg"; repo = "gobgp"; rev = "v${version}"; - sha256 = "sha256-R64Mm8fWZ8VZgsKcnc+ZqAk0V3L+TkpxTmSkx6+KVs0="; + sha256 = "sha256-s4kZepphr3QMUFpxdJW5exZKfUPVTisFTRN81tZnQUY="; }; vendorHash = "sha256-Z7vYpDQIKc4elVBLiGtxF3D9pec4QNvWFLpux/29t1Y="; diff --git a/pkgs/tools/networking/goflow2/default.nix b/pkgs/tools/networking/goflow2/default.nix index f77ca9e7981e2..2ba027e72236d 100644 --- a/pkgs/tools/networking/goflow2/default.nix +++ b/pkgs/tools/networking/goflow2/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "goflow2"; - version = "1.3.3"; + version = "1.3.4"; src = fetchFromGitHub { owner = "netsampler"; repo = pname; rev = "v${version}"; - hash = "sha256-YZuF3O1/Ycn2gFK9i1D/W8F16B6NEift5PYbv8yqUHk="; + hash = "sha256-0E3iSO+ObaPhIUerF4y5UygJMSMJNTJwI6RqHunqrZ0="; }; ldflags = [ @@ -20,7 +20,7 @@ buildGoModule rec { "-X=main.version=${version}" ]; - vendorHash = "sha256-c40N6SAym9dpCuGb5I7t9sJBde2r552obot3drYCjB4="; + vendorHash = "sha256-tNrCsCKBoUsrCOlbI1FUoksWoI4jUiYLF+A8Fjfe9Qk="; meta = with lib; { description = "High performance sFlow/IPFIX/NetFlow Collector"; diff --git a/pkgs/tools/networking/grpc_cli/default.nix b/pkgs/tools/networking/grpc_cli/default.nix index 76db0f21282a6..7083c28955619 100644 --- a/pkgs/tools/networking/grpc_cli/default.nix +++ b/pkgs/tools/networking/grpc_cli/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { pname = "grpc_cli"; - version = "1.55.0"; + version = "1.55.1"; src = fetchFromGitHub { owner = "grpc"; repo = "grpc"; rev = "v${version}"; - hash = "sha256-xEfYNqtMKeJpztUm39PaUrE8OKa8TQhtLBny2/D99VM="; + hash = "sha256-3FaNGrvd+EuknOsShLSZKAHmZoa8eLBw+BHbNK59PGU="; fetchSubmodules = true; }; nativeBuildInputs = [ automake cmake autoconf ]; diff --git a/pkgs/tools/networking/haproxy/default.nix b/pkgs/tools/networking/haproxy/default.nix index 7055a1c861bcb..37b64143f9ac6 100644 --- a/pkgs/tools/networking/haproxy/default.nix +++ b/pkgs/tools/networking/haproxy/default.nix @@ -11,11 +11,11 @@ assert usePcre -> pcre != null; stdenv.mkDerivation rec { pname = "haproxy"; - version = "2.7.8"; + version = "2.8.0"; src = fetchurl { url = "https://www.haproxy.org/download/${lib.versions.majorMinor version}/src/${pname}-${version}.tar.gz"; - sha256 = "sha256-FfInaXG7uoxH2GzILr/G7DPjrvLkVlBYsuSVDAe451w="; + sha256 = "sha256-Yc2vtdt+kXTQdXuOS83pODUjBvt8yP8rX1XCbdSKbPc="; }; buildInputs = [ openssl zlib libxcrypt ] diff --git a/pkgs/tools/networking/hurl/default.nix b/pkgs/tools/networking/hurl/default.nix index ed1b38d8f85f4..28f4d3787c27c 100644 --- a/pkgs/tools/networking/hurl/default.nix +++ b/pkgs/tools/networking/hurl/default.nix @@ -11,16 +11,16 @@ rustPlatform.buildRustPackage rec { pname = "hurl"; - version = "3.0.0"; + version = "3.0.1"; src = fetchFromGitHub { owner = "Orange-OpenSource"; repo = pname; rev = version; - hash = "sha256-m9hAGm5vmo+J+ntQOK5R4vFEVRhW097D1gvjcE/1CnM="; + hash = "sha256-Rh8HBUR3IXYs/0NZJAKk4mHOjliRIAgEsgR402i7FX4="; }; - cargoHash = "sha256-KYlax3Q7w27Q6TNwuDmzJhoiFMWnfMhagAuw0+FIW1c="; + cargoHash = "sha256-9AXusLvkZQ3g4u7z03dy8eXzQ59aRSHFR+uyt3MwKhg="; nativeBuildInputs = [ pkg-config diff --git a/pkgs/tools/networking/isync/default.nix b/pkgs/tools/networking/isync/default.nix index d5af78afb66d0..89b200e8e563b 100644 --- a/pkgs/tools/networking/isync/default.nix +++ b/pkgs/tools/networking/isync/default.nix @@ -1,6 +1,9 @@ { lib, stdenv, fetchurl, pkg-config, perl , openssl, db, cyrus_sasl, zlib , Security +# Disabled by default as XOAUTH2 is an "OBSOLETE" SASL mechanism and this relies +# on a package that isn't really maintained anymore: +, withCyrusSaslXoauth2 ? false, cyrus-sasl-xoauth2, makeWrapper }: stdenv.mkDerivation rec { @@ -20,10 +23,16 @@ stdenv.mkDerivation rec { ./work-around-unexpected-EOF-error-messages-at-end-of-SSL-connections.patch ]; - nativeBuildInputs = [ pkg-config perl ]; + nativeBuildInputs = [ pkg-config perl ] + ++ lib.optionals withCyrusSaslXoauth2 [ makeWrapper ]; buildInputs = [ openssl db cyrus_sasl zlib ] ++ lib.optionals stdenv.isDarwin [ Security ]; + postInstall = lib.optionalString withCyrusSaslXoauth2 '' + wrapProgram "$out/bin/mbsync" \ + --prefix SASL_PATH : "${lib.makeSearchPath "lib/sasl2" [ cyrus-sasl-xoauth2 ]}" + ''; + meta = with lib; { homepage = "http://isync.sourceforge.net/"; # https://sourceforge.net/projects/isync/ diff --git a/pkgs/tools/networking/keama/default.nix b/pkgs/tools/networking/keama/default.nix new file mode 100644 index 0000000000000..0b1e8c91aa151 --- /dev/null +++ b/pkgs/tools/networking/keama/default.nix @@ -0,0 +1,31 @@ +{ stdenv, lib, fetchurl }: + +stdenv.mkDerivation rec { + pname = "keama"; + version = "4.4.3-P1"; + + src = fetchurl { + url = "https://ftp.isc.org/isc/dhcp/${version}/dhcp-${version}.tar.gz"; + sha256 = "sha256-CsQWu1WZfKhjIXT9EHN/1hzbjbonUhYKM1d1vCHcc8c="; + }; + + enableParallelBuilding = true; + + # The Kea Migration Assistant lives as a subdirectory of the + # original ISC DHCP server source code. + makeFlags = [ "-C" "keama" ]; + + meta = with lib; { + description = "Kea Migration Assistent"; + + longDescription = '' + Kea migration assistant is an experimental tool that reads a ISC DHCP server + configuration and produces a JSON configuration in Kea format. + ''; + + homepage = "https://gitlab.isc.org/isc-projects/dhcp/-/wikis/kea-migration-assistant"; + license = licenses.mpl20; + platforms = platforms.unix; + maintainers = with maintainers; [ blitz ]; + }; +} diff --git a/pkgs/tools/networking/minidlna/default.nix b/pkgs/tools/networking/minidlna/default.nix index 84dc5db9c1a5b..2a1eeb0fa4b57 100644 --- a/pkgs/tools/networking/minidlna/default.nix +++ b/pkgs/tools/networking/minidlna/default.nix @@ -2,7 +2,7 @@ let pname = "minidlna"; - version = "1.3.2"; + version = "1.3.3"; in stdenv.mkDerivation { inherit pname version; @@ -10,7 +10,7 @@ stdenv.mkDerivation { src = fetchgit { url = "https://git.code.sf.net/p/${pname}/git"; rev = "v${builtins.replaceStrings [ "." ] [ "_" ] version}"; - hash = "sha256-v+puglrbuLqHIAbrO7bhOA0npc/GYp0Bdi3DnD9qyII="; + hash = "sha256-InsSguoGi1Gp8R/bd4/c16xqRuk0bRsgw7wvcbokgKo="; }; preConfigure = '' diff --git a/pkgs/tools/networking/minio-client/default.nix b/pkgs/tools/networking/minio-client/default.nix index bd36f0a29b58b..39ef3ae81cb63 100644 --- a/pkgs/tools/networking/minio-client/default.nix +++ b/pkgs/tools/networking/minio-client/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "minio-client"; - version = "2023-05-18T16-59-00Z"; + version = "2023-05-30T22-41-38Z"; src = fetchFromGitHub { owner = "minio"; repo = "mc"; rev = "RELEASE.${version}"; - sha256 = "sha256-43aL7UXKwOKHeLvjO/zK4CLf/uLESR23bO0Ro4WGAHQ="; + sha256 = "sha256-PTkT4i7NNLeSGUyrG/bIkPTnIBIA1hTSBUUpJWkdNS0="; }; - vendorHash = "sha256-hfe/Y0eVPDpBNhaQknghQFkCIWuGg64CbrfKnVVB97I="; + vendorHash = "sha256-kjFAUBgMsydP4K32Yiu6BSA8heFhWEBf21iZs+1llCA="; subPackages = [ "." ]; diff --git a/pkgs/tools/networking/mockoon/default.nix b/pkgs/tools/networking/mockoon/default.nix new file mode 100644 index 0000000000000..df151764501b3 --- /dev/null +++ b/pkgs/tools/networking/mockoon/default.nix @@ -0,0 +1,40 @@ +{ lib +, appimageTools +, fetchurl +}: + +let + pname = "mockoon"; + version = "3.0.0"; + + src = fetchurl { + url = "https://github.com/mockoon/mockoon/releases/download/v${version}/mockoon-${version}.AppImage"; + hash = "sha256-YGcD/8h21fUoBEAcBVI5jo0UMCKdVRdC1zxDIrHjU+8="; + }; + + appimageContents = appimageTools.extractType2 { + inherit pname version src; + }; +in + +appimageTools.wrapType2 { + inherit pname version src; + + extraInstallCommands = '' + mv $out/bin/${pname}-${version} $out/bin/${pname} + + install -Dm 444 ${appimageContents}/${pname}.desktop -t $out/share/applications + cp -r ${appimageContents}/usr/share/icons $out/share + + substituteInPlace $out/share/applications/${pname}.desktop \ + --replace 'Exec=AppRun' 'Exec=${pname}' + ''; + + meta = with lib; { + description = "The easiest and quickest way to run mock APIs locally"; + sourceProvenance = with sourceTypes; [ binaryNativeCode ]; + homepage = "https://mockoon.com"; + license = licenses.mit; + maintainers = with maintainers; [ dit7ya ]; + }; +} diff --git a/pkgs/tools/networking/mozillavpn/default.nix b/pkgs/tools/networking/mozillavpn/default.nix index dd8ce048af07d..92cb1e553f843 100644 --- a/pkgs/tools/networking/mozillavpn/default.nix +++ b/pkgs/tools/networking/mozillavpn/default.nix @@ -2,6 +2,7 @@ , cargo , cmake , fetchFromGitHub +, fetchpatch , go , lib , libsecret @@ -23,43 +24,56 @@ let pname = "mozillavpn"; - version = "2.14.1"; + version = "2.15.0"; src = fetchFromGitHub { owner = "mozilla-mobile"; repo = "mozilla-vpn-client"; rev = "v${version}"; fetchSubmodules = true; - hash = "sha256-xWm21guI+h0bKd/rEyxVMyxypCitLWEbVy7TaVBKh4o="; + hash = "sha256-eyYrA8ysfmXxlHNUBkGU9ioYrnbx3L1wP9byNz9L/MA="; }; + patches = [ + # Force version downgrade for openssl and openssl-sys crates + (fetchpatch { + url = "https://github.com/mozilla-mobile/mozilla-vpn-client/commit/5911071ea37d12401af32dcdf2a542ca5049bf2f.patch"; + hash = "sha256-b3yOgn3Et0sYpqzUUdmlGIbzZSz13Q9HW56hyQqRnHc="; + revert = true; + }) + # [2.15] Restore qtglean/Cargo.lock + (fetchpatch { + url = "https://github.com/mozilla-mobile/mozilla-vpn-client/pull/7026/commits/13c1b77ee4249883a33b6ac240b3ca143b485ba1.patch"; + hash = "sha256-L4D71zreDMLAIbP4x1as9QdNmMC1snUZSwlkKehg5yM="; + }) + ]; netfilter-go-modules = (buildGoModule { - inherit pname version src; + inherit pname version src patches; modRoot = "linux/netfilter"; vendorHash = "sha256-Cmo0wnl0z5r1paaEf1MhCPbInWeoMhGjnxCxGh0cyO8="; }).go-modules; extensionBridgeDeps = rustPlatform.fetchCargoTarball { - inherit src; + inherit src patches; name = "${pname}-${version}-extension-bridge"; preBuild = "cd extension/bridge"; - hash = "sha256-XW47EnNHm5JUWCqDU/iHB6ZRGny4v5x7Fs/1dv5TfzM="; + hash = "sha256-R/9ePEhc4qVgg3WC5ng+cD88K/N3PTnx4QWyaZZfRds="; }; signatureDeps = rustPlatform.fetchCargoTarball { - inherit src; + inherit src patches; name = "${pname}-${version}-signature"; preBuild = "cd signature"; - hash = "sha256-CNPL1Orn+ZbX0HL+CHMaoXPI9G8MoC+hY8pJTJlWH1U="; + hash = "sha256-27g2qnnUrxbThM1cHZquQgWQLWDtZaBnlf8PjvQtBJU="; }; - vpngleanDeps = rustPlatform.fetchCargoTarball { - inherit src; - name = "${pname}-${version}-vpnglean"; - preBuild = "cd vpnglean"; - hash = "sha256-5vazbCqzJG6iA0MFaTNha42jb1pgLhr0P9I8rQxSKtw="; + qtgleanDeps = rustPlatform.fetchCargoTarball { + inherit src patches; + name = "${pname}-${version}-qtglean"; + preBuild = "cd qtglean"; + hash = "sha256-cW+nf+Dho+eSzOBo3xhxki7NXpg0wd5ZM9OMA6iOUl4="; }; in stdenv.mkDerivation { - inherit pname version src; + inherit pname version src patches; buildInputs = [ libsecret @@ -95,9 +109,9 @@ stdenv.mkDerivation { signatureDepsCopy="$cargoDepsCopy" popd - pushd source/vpnglean - cargoDeps='${vpngleanDeps}' cargoSetupPostUnpackHook - vpngleanDepsCopy="$cargoDepsCopy" + pushd source/qtglean + cargoDeps='${qtgleanDeps}' cargoSetupPostUnpackHook + qtgleanDepsCopy="$cargoDepsCopy" popd ''; dontCargoSetupPostUnpack = true; @@ -128,8 +142,8 @@ stdenv.mkDerivation { cargoDepsCopy="$signatureDepsCopy" cargoSetupPostPatchHook popd - pushd vpnglean - cargoDepsCopy="$vpngleanDepsCopy" cargoSetupPostPatchHook + pushd qtglean + cargoDepsCopy="$qtgleanDepsCopy" cargoSetupPostPatchHook popd cargoSetupPostPatchHook() { true; } diff --git a/pkgs/tools/networking/nebula/default.nix b/pkgs/tools/networking/nebula/default.nix index c20a6dd38e1d4..4147adf50749b 100644 --- a/pkgs/tools/networking/nebula/default.nix +++ b/pkgs/tools/networking/nebula/default.nix @@ -6,13 +6,13 @@ buildGoModule rec { pname = "nebula"; - version = "1.7.1"; + version = "1.7.2"; src = fetchFromGitHub { owner = "slackhq"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-2FQ/mX1Y2UBl9SiIBVkll0W7P9RWAWJpQwEGKTtplrU="; + hash = "sha256-/kEXrcMFnrnnD+6754EDoOvn4czh0rJGEjlXkmCzb1w="; }; vendorHash = "sha256-VZzSdl8R1y7rCF2vz7e+5nAkb3wlJymNWCXwZZUvg4A="; diff --git a/pkgs/tools/networking/netbird/default.nix b/pkgs/tools/networking/netbird/default.nix index b75b7e98918f8..f8ebea0e4c589 100644 --- a/pkgs/tools/networking/netbird/default.nix +++ b/pkgs/tools/networking/netbird/default.nix @@ -30,16 +30,16 @@ let in buildGoModule rec { pname = "netbird"; - version = "0.20.3"; + version = "0.21.0"; src = fetchFromGitHub { owner = "netbirdio"; repo = pname; rev = "v${version}"; - sha256 = "sha256-aKgqkmNM+NQ2BujOG7tVyYees0Gxwf8LzrFft4FCLZk="; + sha256 = "sha256-ZQvWK8PbstYGABT5f456JsplCTE/XlAwGdvFM/BdSiU="; }; - vendorHash = "sha256-mO0I0+nT1eL4DbUpgS8wCKjXH80ca6q6RLoagz9W5uI="; + vendorHash = "sha256-C8FFybfLVDb5vc60nEyc3KynxbmU/7I/RM3RZgmYd1A="; nativeBuildInputs = [ installShellFiles ] ++ lib.optional ui pkg-config; diff --git a/pkgs/tools/networking/nexttrace/default.nix b/pkgs/tools/networking/nexttrace/default.nix index 0a221772e199f..cb630b567d683 100644 --- a/pkgs/tools/networking/nexttrace/default.nix +++ b/pkgs/tools/networking/nexttrace/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "nexttrace"; - version = "1.1.5"; + version = "1.1.6"; src = fetchFromGitHub { owner = "sjlleo"; repo = pname; rev = "v${version}"; - sha256 = "sha256-9JLJ6v8eDVgqB4mdbHtBCZ1Wm5gjk7ywjGGgYOFZFAQ="; + sha256 = "sha256-nANxqASwvYYoTTZeQpHyJfldS58rmKga+I5QYMRgvQA="; }; vendorHash = "sha256-1geVqj4W9HoMCM1OkGqpYqHj2jGoGEU9Zv6fkaHBzpk="; diff --git a/pkgs/tools/networking/ockam/default.nix b/pkgs/tools/networking/ockam/default.nix index 70ceee7e5ee9f..edd14b0c6a9c8 100644 --- a/pkgs/tools/networking/ockam/default.nix +++ b/pkgs/tools/networking/ockam/default.nix @@ -12,7 +12,7 @@ let pname = "ockam"; - version = "0.87.0"; + version = "0.88.0"; in rustPlatform.buildRustPackage { inherit pname version; @@ -21,10 +21,10 @@ rustPlatform.buildRustPackage { owner = "build-trust"; repo = pname; rev = "ockam_v${version}"; - sha256 = "sha256-cg1DsQADhNK5xKKly7F7I4pIc5Ku91niCb6rUwOpAO4="; + sha256 = "sha256-M7lDXgQ1ofzg6LwI9ZcvtzjWyKuon+hdtxKmLqyOQpc="; }; - cargoHash = "sha256-eUvWh7o3zhbs8hF2aiLpdkKWVAu7CvyqVvr+bhd5PLI="; + cargoHash = "sha256-ZTTfxndoTOgtg6rWVEPv5vmdNxdn7wPXXwTDVJoTc+c="; nativeBuildInputs = [ git pkg-config ]; buildInputs = [ openssl dbus ] ++ lib.optionals stdenv.isDarwin [ Security ]; diff --git a/pkgs/tools/networking/ocserv/default.nix b/pkgs/tools/networking/ocserv/default.nix index 29801eebbd78d..ad58252d6ae9e 100644 --- a/pkgs/tools/networking/ocserv/default.nix +++ b/pkgs/tools/networking/ocserv/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { pname = "ocserv"; - version = "1.1.6"; + version = "1.1.7"; src = fetchFromGitLab { owner = "openconnect"; repo = "ocserv"; rev = version; - sha256 = "sha256-1grRt0F/myVzK+DMSeK5K0Ui8bJANEtE6/6IY+ZbPAw="; + sha256 = "sha256-30S2puoL+5cBZ5nCKW2zvGPcnFvaKjRZVGKDC3E5XRk="; }; nativeBuildInputs = [ autoreconfHook gperf pkg-config ronn ]; diff --git a/pkgs/tools/networking/ooniprobe-cli/default.nix b/pkgs/tools/networking/ooniprobe-cli/default.nix index 0e76413a261ae..d665d58136007 100644 --- a/pkgs/tools/networking/ooniprobe-cli/default.nix +++ b/pkgs/tools/networking/ooniprobe-cli/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "ooniprobe-cli"; - version = "3.17.2"; + version = "3.17.3"; src = fetchFromGitHub { owner = "ooni"; repo = "probe-cli"; rev = "v${version}"; - hash = "sha256-wPvWIeanozLQwgDlU3WR11NYhIpjw04vj7DlnFlacNw="; + hash = "sha256-kqjTYowAEfJ+um9DQQXIMLVWlEGJ9intbdTSJukSvVc="; }; - vendorHash = "sha256-r8kyL9gpdDesY8Mbm4lONAhWC4We26Z9uG7QMt1JT9c="; + vendorHash = "sha256-kS5HWiATn2WT6E5gb0Gve83hHJ++xHmPSsgJu/5GqO4="; subPackages = [ "cmd/ooniprobe" ]; diff --git a/pkgs/tools/networking/openconnect/default.nix b/pkgs/tools/networking/openconnect/default.nix index 1ea893948dc5e..0da1cb1866a29 100644 --- a/pkgs/tools/networking/openconnect/default.nix +++ b/pkgs/tools/networking/openconnect/default.nix @@ -5,20 +5,10 @@ let }; in rec { openconnect = common rec { - version = "9.01"; + version = "9.12"; src = fetchurl { url = "ftp://ftp.infradead.org/pub/openconnect/openconnect-${version}.tar.gz"; - sha256 = "sha256-s9f6+DDpeTKZ1qQegdhM1KPieJwUjJ5ZjkWFAQCQ5Mc="; - }; - }; - - openconnect_unstable = common { - version = "unstable-2022-03-14"; - src = fetchFromGitLab { - owner = "openconnect"; - repo = "openconnect"; - rev = "a27a46f1362978db9723c8730f2533516b4b31b1"; - sha256 = "sha256-Kz98GHCyEcx7vUF+AXMLR7886+iKGKNwx1iRaYcH8ps="; + sha256 = "sha256-or7c46pN/nXjbkB+SOjovJHUbe9TNayVZPv5G9SyQT4="; }; }; diff --git a/pkgs/tools/networking/pacparser/default.nix b/pkgs/tools/networking/pacparser/default.nix index 8caf4568c99bc..89fca0a220ba6 100644 --- a/pkgs/tools/networking/pacparser/default.nix +++ b/pkgs/tools/networking/pacparser/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "pacparser"; - version = "1.4.1"; + version = "1.4.2"; src = fetchFromGitHub { owner = "manugarg"; repo = pname; rev = "v${version}"; - sha256 = "sha256-tEbkMRHCdiKXpz9Ksg2LEzfOVhF8xbUHWMeExPMlGVM="; + sha256 = "sha256-p83aAcZ3fGOrokq4HDgF5/VxMl3Q11voSjdaBUUO4S0="; }; makeFlags = [ "NO_INTERNET=1" ]; diff --git a/pkgs/tools/networking/piknik/default.nix b/pkgs/tools/networking/piknik/default.nix new file mode 100644 index 0000000000000..7b5b1a5e04c37 --- /dev/null +++ b/pkgs/tools/networking/piknik/default.nix @@ -0,0 +1,37 @@ +{ lib +, buildGoModule +, fetchFromGitHub +, testers +, piknik +}: + +buildGoModule rec { + pname = "piknik"; + version = "0.10.1"; + + src = fetchFromGitHub { + owner = "jedisct1"; + repo = "piknik"; + rev = version; + hash = "sha256-3yvr2H1a9YtgOEEBwn1HlGXIWFzRwQPBw9+KQxW3/jo="; + }; + + vendorHash = null; + + ldflags = [ "-s" "-w" ]; + + passthru.tests = { + version = testers.testVersion { + package = piknik; + version = "v${version}"; + }; + }; + + meta = with lib; { + description = "Copy/paste anything over the network"; + homepage = "https://github.com/jedisct1/piknik"; + changelog = "https://github.com/jedisct1/piknik/blob/${src.rev}/ChangeLog"; + license = licenses.bsd2; + maintainers = with maintainers; [ figsoda ]; + }; +} diff --git a/pkgs/tools/networking/rathole/default.nix b/pkgs/tools/networking/rathole/default.nix index 65cd33eb24435..db1f2921917c9 100644 --- a/pkgs/tools/networking/rathole/default.nix +++ b/pkgs/tools/networking/rathole/default.nix @@ -9,16 +9,16 @@ rustPlatform.buildRustPackage rec { pname = "rathole"; - version = "0.4.7"; + version = "0.4.8"; src = fetchFromGitHub { owner = "rapiz1"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-YauQg+P4Y8oO8Kn6FB3NxBI7PHoo/bjS38bM1lFeCH0="; + hash = "sha256-yqZPs0rp3LD7n4+JGa55gZ4xMcumy+oazrxCqpDzIfQ="; }; - cargoHash = "sha256-OcPmHqjW79SKMET6J5HIwmR5vESh+PJcQjSMsqmnIb8="; + cargoHash = "sha256-BZ6AgH/wnxrDLkyncR0pbayae9v5P7X7UnlJ48JR8sM="; nativeBuildInputs = [ pkg-config diff --git a/pkgs/tools/networking/rshijack/default.nix b/pkgs/tools/networking/rshijack/default.nix index 39f4004eaee09..150502572e642 100644 --- a/pkgs/tools/networking/rshijack/default.nix +++ b/pkgs/tools/networking/rshijack/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "rshijack"; - version = "0.4.0"; + version = "0.5.0"; src = fetchFromGitHub { owner = "kpcyrd"; repo = pname; rev = "v${version}"; - sha256 = "sha256-jpiwbjsYsb5scFbjtv2eTv6oo0HWWTYLpnpTZ8DEqb0="; + sha256 = "sha256-ys1uiUQbge/eKAog2f0wL9xM+RxuxNlsc8ZceoDJk9s="; }; - cargoSha256 = "sha256-biHDnLu7OiYpnwtmayk2m6QYvX51YUVJH2FGP4qo14Q="; + cargoHash = "sha256-GkoRgl0jzej8HoD2wojLg71NQcGvQZTtdD4zuvsJa4Y="; meta = with lib; { description = "TCP connection hijacker"; diff --git a/pkgs/tools/networking/sitespeed-io/default.nix b/pkgs/tools/networking/sitespeed-io/default.nix new file mode 100644 index 0000000000000..880bf64e0640b --- /dev/null +++ b/pkgs/tools/networking/sitespeed-io/default.nix @@ -0,0 +1,91 @@ +{ lib +, stdenv +, fetchFromGitHub +, buildNpmPackage +, makeWrapper +, coreutils +, ffmpeg-headless +, imagemagick_light +, procps +, python3 +, xorg + +# chromedriver is more efficient than geckodriver, but is available on less platforms. + +, withChromium ? (lib.elem stdenv.hostPlatform.system chromedriver.meta.platforms) +, chromedriver +, chromium + +, withFirefox ? (lib.elem stdenv.hostPlatform.system geckodriver.meta.platforms) +, geckodriver +, firefox +}: +assert (!withFirefox && !withChromium) -> throw "Either `withFirefox` or `withChromium` must be enabled."; +buildNpmPackage rec { + pname = "sitespeed-io"; + version = "27.3.1"; + + src = fetchFromGitHub { + owner = "sitespeedio"; + repo = "sitespeed.io"; + rev = "v${version}"; + hash = "sha256-Z4U4ZIw5Du/VSHIsGKdgu7wRv/6XVh/nMFDs8aYwkOQ="; + }; + + postPatch = '' + ln -s npm-shrinkwrap.json package-lock.json + ''; + + # Don't try to download the browser drivers + CHROMEDRIVER_SKIP_DOWNLOAD = true; + GECKODRIVER_SKIP_DOWNLOAD = true; + EDGEDRIVER_SKIP_DOWNLOAD = true; + + nativeBuildInputs = [ python3 makeWrapper ]; + + dontNpmBuild = true; + npmInstallFlags = [ "--omit=dev" ]; + npmDepsHash = "sha256-Z9SSIPF/QPDsv4DexiqJAAXhY/QvnWqnauih6DT7I8o="; + + postInstall = '' + mv $out/bin/sitespeed{.,-}io + mv $out/bin/sitespeed{.,-}io-wpr + ''; + + postFixup = + let + chromiumArgs = lib.concatStringsSep " " [ + "--browsertime.chrome.chromedriverPath=${lib.getExe chromedriver}" + "--browsertime.chrome.binaryPath=${lib.getExe chromium}" + ]; + firefoxArgs = lib.concatStringsSep " " [ + "--browsertime.firefox.geckodriverPath=${lib.getExe geckodriver}" + "--browsertime.firefox.binaryPath=${lib.getExe firefox}" + # Firefox crashes if the profile template dir is not writable + "--browsertime.firefox.profileTemplate=$(mktemp -d)" + ]; + in + '' + wrapProgram $out/bin/sitespeed-io \ + --set PATH ${lib.makeBinPath ([ + (python3.withPackages (p: [p.numpy p.opencv4 p.pyssim])) + ffmpeg-headless + imagemagick_light + xorg.xorgserver + procps + coreutils + ])} \ + ${lib.optionalString withChromium "--add-flags '${chromiumArgs}'"} \ + ${lib.optionalString withFirefox "--add-flags '${firefoxArgs}'"} \ + ${lib.optionalString (!withFirefox && withChromium) "--add-flags '-b chrome'"} \ + ${lib.optionalString (withFirefox && !withChromium) "--add-flags '-b firefox'"} + ''; + + meta = with lib; { + description = "An open source tool that helps you monitor, analyze and optimize your website speed and performance"; + homepage = "https://sitespeed.io"; + license = licenses.mit; + maintainers = with maintainers; [ misterio77 ]; + platforms = lib.unique (geckodriver.meta.platforms ++ chromedriver.meta.platforms); + }; +} diff --git a/pkgs/tools/networking/speedtest-go/default.nix b/pkgs/tools/networking/speedtest-go/default.nix index 8337e62a0dc76..680f81dadacca 100644 --- a/pkgs/tools/networking/speedtest-go/default.nix +++ b/pkgs/tools/networking/speedtest-go/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "speedtest-go"; - version = "1.6.0"; + version = "1.6.3"; src = fetchFromGitHub { owner = "showwin"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-LpsesUC0Cj9pkc/6c0wDEl6X9Y6GqwACwVv7J31TTg0="; + hash = "sha256-xZq7wiD0H6W7BeOQoTkWVmFM1dV24clJUibNaW0lLwk="; }; vendorHash = "sha256-wQqAX7YuxxTiMWmV9LRoXunGMMzs12UyHbf4VvbQF1E="; diff --git a/pkgs/tools/networking/spoofer/default.nix b/pkgs/tools/networking/spoofer/default.nix index 3bc75d8318055..905a28b1b3d02 100644 --- a/pkgs/tools/networking/spoofer/default.nix +++ b/pkgs/tools/networking/spoofer/default.nix @@ -6,11 +6,11 @@ in stdenv.mkDerivation rec { pname = "spoofer"; - version = "1.4.11"; + version = "1.4.12"; src = fetchurl { url = "https://www.caida.org/projects/spoofer/downloads/${pname}-${version}.tar.gz"; - sha256 = "sha256-FCGFOweeL4o31H/JgqeGiLm3uBjYHz6zzor2ockpA/w="; + sha256 = "sha256-3ljCPmazKz0fHer2yN6baFLu425Dsr9ppdjr2Iv5YJ8="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/tools/networking/subfinder/default.nix b/pkgs/tools/networking/subfinder/default.nix index 7db37f232783d..aebf6d63fa584 100644 --- a/pkgs/tools/networking/subfinder/default.nix +++ b/pkgs/tools/networking/subfinder/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "subfinder"; - version = "2.5.8"; + version = "2.5.9"; src = fetchFromGitHub { owner = "projectdiscovery"; repo = pname; rev = "v${version}"; - sha256 = "sha256-/q6ES1fW9/vxe03w73VyAHfOZNK6g5hxwi3qhxCiN6M="; + sha256 = "sha256-d2xVK7KdmSUeOVBtTysKX5cB7E59tXt9d/uORA31Wd4="; }; - vendorHash = "sha256-sUkSxpWDqBe15BFVGNHTF1lV2mXZ0kjevMvdHtuNjXs="; + vendorHash = "sha256-WZrwvKEznv2LFuOVW4kRzS9bmKuGbanMiV7TpvnxTIo="; modRoot = "./v2"; diff --git a/pkgs/tools/networking/swagger-cli/default.nix b/pkgs/tools/networking/swagger-cli/default.nix new file mode 100644 index 0000000000000..9c9145f327fdc --- /dev/null +++ b/pkgs/tools/networking/swagger-cli/default.nix @@ -0,0 +1,30 @@ +{ lib +, stdenv +, fetchFromGitHub +, buildNpmPackage +}: + +buildNpmPackage rec { + pname = "swagger-cli"; + version = "4.0.4"; + + src = fetchFromGitHub { + owner = "APIDevTools"; + repo = "swagger-cli"; + rev = "v${version}"; + sha256 = "sha256-WgzfSd57vRwa1HrSgNxD0F5ckczBkOaVmrEZ9tMAcRA="; + }; + + npmDepsHash = "sha256-go9eYGCZmbwRArHVTVa6mxL+kjvBcrLxKw2iVv0a5hY="; + + buildPhase = '' + npm run bump + ''; + + meta = with lib; { + description = "Swagger 2.0 and OpenAPI 3.0 command-line tool"; + homepage = "https://apitools.dev/swagger-cli/"; + license = licenses.mit; + maintainers = with maintainers; [ dit7ya ]; + }; +} diff --git a/pkgs/tools/networking/trurl/default.nix b/pkgs/tools/networking/trurl/default.nix index 9d1b24a71cd36..5253e06b2a416 100644 --- a/pkgs/tools/networking/trurl/default.nix +++ b/pkgs/tools/networking/trurl/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "trurl"; - version = "0.6"; + version = "0.7"; src = fetchFromGitHub { owner = "curl"; repo = pname; rev = "${pname}-${version}"; - hash = "sha256-/Gf7T67LPzVPhjAqTvbLiJOqfKeWvwH/WHelJZTH4ZI="; + hash = "sha256-2F/01FUsOa8ZqU1YHrxTD4KcJul2OEoW/RJCXoLfywg="; }; outputs = [ "out" "dev" "man" ]; diff --git a/pkgs/tools/networking/v2ray/default.nix b/pkgs/tools/networking/v2ray/default.nix index ffccea276ea63..7ec5a396f91f6 100644 --- a/pkgs/tools/networking/v2ray/default.nix +++ b/pkgs/tools/networking/v2ray/default.nix @@ -6,18 +6,18 @@ buildGoModule rec { pname = "v2ray-core"; - version = "5.4.1"; + version = "5.7.0"; src = fetchFromGitHub { owner = "v2fly"; repo = "v2ray-core"; rev = "v${version}"; - hash = "sha256-LrsLkuLoiZb3Y5BUkg9lB+qd0HHbgRNrixm5BdQMKck="; + hash = "sha256-gdDV5Cd/DjEqSiOF7j5a8QLtdJiFeNCnHoA4XD+yiGA="; }; # `nix-update` doesn't support `vendorHash` yet. # https://github.com/Mic92/nix-update/pull/95 - vendorSha256 = "sha256-0uc+oncdOdIhIygr2ktT7f1qHIeyoVEnjyhzsUMjMBY="; + vendorSha256 = "sha256-uq0v14cRGmstJabrERsa+vFRX6Bg8+5CU6iV8swrL/I="; ldflags = [ "-s" "-w" "-buildid=" ]; diff --git a/pkgs/tools/nix/gridlock/default.nix b/pkgs/tools/nix/gridlock/default.nix new file mode 100644 index 0000000000000..7e3bee28ebb71 --- /dev/null +++ b/pkgs/tools/nix/gridlock/default.nix @@ -0,0 +1,45 @@ +{ lib +, rustPlatform +, fetchFromGitHub +, pkg-config +, openssl +, stdenv +, darwin +}: + +rustPlatform.buildRustPackage { + pname = "gridlock"; + version = "unstable-2023-03-03"; + + outputs = [ "out" "nyarr" ]; + + src = fetchFromGitHub { + owner = "lf-"; + repo = "gridlock"; + rev = "15261abdb179e1d7e752772bf9db132b3ee343ea"; + hash = "sha256-rnPAEJH3TebBH6lqgVo7B+nNiArDIkGDnIZWcteFNEw="; + }; + + cargoHash = "sha256-EPs5vJ2RkVXKxrTRtbT/1FbvCT0KJtNuW2WKIUq7G0U="; + + nativeBuildInputs = [ + pkg-config + ]; + + buildInputs = [ + openssl + ] ++ lib.optionals stdenv.isDarwin [ + darwin.apple_sdk.frameworks.Security + ]; + + postInstall = '' + moveToOutput bin/nyarr $nyarr + ''; + + meta = with lib; { + description = "Nix compatible lockfile manager, without Nix"; + homepage = "https://github.com/lf-/gridlock"; + license = licenses.mit; + maintainers = with maintainers; [ figsoda ]; + }; +} diff --git a/pkgs/tools/package-management/apx/default.nix b/pkgs/tools/package-management/apx/default.nix index c7e9581d99b2a..e1f134a2f5f9a 100644 --- a/pkgs/tools/package-management/apx/default.nix +++ b/pkgs/tools/package-management/apx/default.nix @@ -9,13 +9,13 @@ buildGoModule rec { pname = "apx"; - version = "1.7.0-1"; + version = "1.8.2"; src = fetchFromGitHub { owner = "Vanilla-OS"; repo = pname; - rev = "v${version}"; - hash = "sha256-tonI3S0a08MbR369qaKS2BoWc3QzXWzTuGx/zSgUz7s="; + rev = "refs/tags/${version}"; + hash = "sha256-nBhSl4r7LlgCA5/HCLpOleihE5n/JCJgf43KdCklQbg="; }; vendorSha256 = null; @@ -41,13 +41,14 @@ buildGoModule rec { wrapProgram $out/bin/apx --prefix PATH : ${lib.makeBinPath [ docker distrobox ]} - installManPage man/apx.1 man/es/apx.1 + installManPage man/de/man1/apx.1 man/es/man1/apx.1 man/fr/man1/apx.1 man/it/man1/apx.1 man/man1/apx.1 man/nl/man1/apx.1 man/pl/man1/apx.1 man/pt/man1/apx.1 man/pt_BR/man1/apx.1 man/ro/man1/apx.1 man/ru/man1/apx.1 man/sv/man1/apx.1 man/tr/man1/apx.1 ''; meta = with lib; { description = "The Vanilla OS package manager"; homepage = "https://github.com/Vanilla-OS/apx"; - license = licenses.gpl3; + changelog = "https://github.com/Vanilla-OS/apx/releases/tag/${version}"; + license = licenses.gpl3Only; maintainers = with maintainers; [ dit7ya ]; }; } diff --git a/pkgs/tools/package-management/home-manager/default.nix b/pkgs/tools/package-management/home-manager/default.nix index b9857d8a070c9..89a626fef6727 100644 --- a/pkgs/tools/package-management/home-manager/default.nix +++ b/pkgs/tools/package-management/home-manager/default.nix @@ -1,58 +1,92 @@ -#Adapted from -#https://github.com/rycee/home-manager/blob/2c07829be2bcae55e04997b19719ff902a44016d/home-manager/default.nix - -{ bash, coreutils, findutils, gnused, less, ncurses, gettext, nixos-option, lib, stdenv, makeWrapper, fetchFromGitHub }: - -stdenv.mkDerivation rec { +{ lib +, stdenvNoCC +, fetchFromGitHub +, bash +, coreutils +, findutils +, gettext +, gnused +, less +, ncurses +, nixos-option +, unixtools +, installShellFiles +, unstableGitUpdater +}: +stdenvNoCC.mkDerivation (finalAttrs: { pname = "home-manager"; - version = "2023-04-02"; + version = "2023-05-30"; src = fetchFromGitHub { + name = "home-manager-source"; owner = "nix-community"; repo = "home-manager"; - rev = "ddd8866c0306c48f465e7f48432e6f1ecd1da7f8"; - sha256 = "sha256-+8FUmS4GbDMynQErZGXKg+wU76rq6mI5fprxFXFWKSM="; + rev = "54a9d6456eaa6195998a0f37bdbafee9953ca0fb"; + hash = "sha256-pkk3J9gX745LEkkeTGhSRJqPJkmCPQzwI/q7a720XaY="; }; - nativeBuildInputs = [ makeWrapper ]; + nativeBuildInputs = [ + gettext + installShellFiles + ]; + + dontConfigure = true; dontBuild = true; installPhase = '' - install -v -D -m755 ${src}/home-manager/home-manager $out/bin/home-manager + runHook preInstall + + install -D -m755 home-manager/home-manager $out/bin/home-manager + install -D -m755 lib/bash/home-manager.sh $out/share/bash/home-manager.sh substituteInPlace $out/bin/home-manager \ --subst-var-by bash "${bash}" \ --subst-var-by DEP_PATH "${ - lib.makeBinPath [ coreutils findutils gettext gnused less ncurses nixos-option ] + lib.makeBinPath [ + coreutils + findutils + gettext + gnused + less + ncurses + nixos-option + unixtools.hostname + ] }" \ - --subst-var-by HOME_MANAGER_LIB '${src}/lib/bash/home-manager.sh' \ - --subst-var-by HOME_MANAGER_PATH '${src}' \ - --subst-var-by OUT "$out" - - install -D -m755 ${src}/home-manager/completion.bash \ - $out/share/bash-completion/completions/home-manager - install -D -m755 ${src}/home-manager/completion.zsh \ - $out/share/zsh/site-functions/_home-manager - install -D -m755 ${src}/home-manager/completion.fish \ - $out/share/fish/vendor_completions.d/home-manager.fish - - install -D -m755 ${src}/lib/bash/home-manager.sh \ - "$out/share/bash/home-manager.sh" - - for path in ${src}/home-manager/po/*.po; do - lang="''${path##*/}" + --subst-var-by HOME_MANAGER_LIB '${placeholder "out"}/share/bash/home-manager.sh' \ + --subst-var-by HOME_MANAGER_PATH "" \ + --subst-var-by OUT '${placeholder "out"}' + + installShellCompletion --bash --name home-manager.bash home-manager/completion.bash + installShellCompletion --fish --name home-manager.fish home-manager/completion.fish + installShellCompletion --zsh --name _home-manager home-manager/completion.zsh + + for pofile in home-manager/po/*.po; do + lang="''${pofile##*/}" lang="''${lang%%.*}" mkdir -p "$out/share/locale/$lang/LC_MESSAGES" - ${gettext}/bin/msgfmt -o "$out/share/locale/$lang/LC_MESSAGES/home-manager.mo" "$path" + msgfmt -o "$out/share/locale/$lang/LC_MESSAGES/home-manager.mo" "$pofile" done + + runHook postInstall ''; - meta = with lib; { - description = "A user environment configurator"; - homepage = "https://rycee.gitlab.io/home-manager/"; - platforms = platforms.unix; - license = licenses.mit; + passthru.updateScript = unstableGitUpdater { + url = "https://github.com/nix-community/home-manager/"; }; -} + meta = { + homepage = "https://nix-community.github.io/home-manager/"; + description = "A Nix-based user environment configurator"; + longDescription = '' + The Home-Manager project provides a basic system for managing a user + environment using the Nix package manager together with the Nix libraries + found in Nixpkgs. It allows declarative configuration of user specific + (non global) packages and dotfiles. + ''; + platforms = lib.platforms.unix; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ AndersonTorres ]; + }; +}) diff --git a/pkgs/tools/package-management/nix-update/default.nix b/pkgs/tools/package-management/nix-update/default.nix index 81bdca2ed4f3a..e6e1ba55ff535 100644 --- a/pkgs/tools/package-management/nix-update/default.nix +++ b/pkgs/tools/package-management/nix-update/default.nix @@ -9,14 +9,14 @@ python3.pkgs.buildPythonApplication rec { pname = "nix-update"; - version = "0.17.2"; + version = "0.18.0"; format = "setuptools"; src = fetchFromGitHub { owner = "Mic92"; repo = pname; rev = version; - hash = "sha256-W2vBKgdPOLGdAIxbHD4Qi4ivAabFSuu7ikvu5kItwN8="; + hash = "sha256-6VROgVx1bQRgoCZJYXQPAgkqArqAnMwTNg7iHLhbKro="; }; makeWrapperArgs = [ diff --git a/pkgs/tools/package-management/nix/common.nix b/pkgs/tools/package-management/nix/common.nix index 6425ae8721cac..19b8d77bb4a7f 100644 --- a/pkgs/tools/package-management/nix/common.nix +++ b/pkgs/tools/package-management/nix/common.nix @@ -1,11 +1,11 @@ { lib, fetchFromGitHub , version , suffix ? "" -, sha256 ? null -, src ? fetchFromGitHub { owner = "NixOS"; repo = "nix"; rev = version; inherit sha256; } +, hash ? null +, src ? fetchFromGitHub { owner = "NixOS"; repo = "nix"; rev = version; inherit hash; } , patches ? [ ] }: -assert (sha256 == null) -> (src != null); +assert (hash == null) -> (src != null); let atLeast24 = lib.versionAtLeast version "2.4pre"; atLeast25 = lib.versionAtLeast version "2.5pre"; diff --git a/pkgs/tools/package-management/nix/default.nix b/pkgs/tools/package-management/nix/default.nix index 5929868ab72c0..e70f195d2679c 100644 --- a/pkgs/tools/package-management/nix/default.nix +++ b/pkgs/tools/package-management/nix/default.nix @@ -32,7 +32,7 @@ let owner = "aws"; repo = "aws-sdk-cpp"; rev = version; - sha256 = "sha256-Z1eRKW+8nVD53GkNyYlZjCcT74MqFqqRMeMc33eIQ9g="; + hash = "sha256-Z1eRKW+8nVD53GkNyYlZjCcT74MqFqqRMeMc33eIQ9g="; }; postPatch = '' # Avoid blanket -Werror to evade build failures on less @@ -94,21 +94,21 @@ let patch-monitorfdhup = fetchpatch2 { name = "nix-7585-monitor-fd-hup.patch"; url = "https://github.com/NixOS/nix/commit/1df3d62c769dc68c279e89f68fdd3723ed3bcb5a.patch"; - sha256 = "sha256-f+F0fUO+bqyPXjt+IXJtISVr589hdc3y+Cdrxznb+Nk="; + hash = "sha256-f+F0fUO+bqyPXjt+IXJtISVr589hdc3y+Cdrxznb+Nk="; }; # https://github.com/NixOS/nix/pull/7473 patch-sqlite-exception = fetchpatch2 { name = "nix-7473-sqlite-exception-add-message.patch"; url = "https://github.com/hercules-ci/nix/commit/c965f35de71cc9d88f912f6b90fd7213601e6eb8.patch"; - sha256 = "sha256-tI5nKU7SZgsJrxiskJ5nHZyfrWf5aZyKYExM0792N80="; + hash = "sha256-tI5nKU7SZgsJrxiskJ5nHZyfrWf5aZyKYExM0792N80="; }; patch-non-existing-output = fetchpatch { # https://github.com/NixOS/nix/pull/7283 name = "fix-requires-non-existing-output.patch"; url = "https://github.com/NixOS/nix/commit/3ade5f5d6026b825a80bdcc221058c4f14e10a27.patch"; - sha256 = "sha256-s1ybRFCjQaSGj7LKu0Z5g7UiHqdJGeD+iPoQL0vaiS0="; + hash = "sha256-s1ybRFCjQaSGj7LKu0Z5g7UiHqdJGeD+iPoQL0vaiS0="; }; in lib.makeExtensible (self: { @@ -116,7 +116,7 @@ in lib.makeExtensible (self: { version = "2.3.16"; src = fetchurl { url = "https://nixos.org/releases/nix/nix-${version}/nix-${version}.tar.xz"; - sha256 = "sha256-fuaBtp8FtSVJLSAsO+3Nne4ZYLuBj2JpD2xEk7fCqrw="; + hash = "sha256-fuaBtp8FtSVJLSAsO+3Nne4ZYLuBj2JpD2xEk7fCqrw="; }; patches = [ patch-monitorfdhup @@ -137,7 +137,7 @@ in lib.makeExtensible (self: { nix_2_10 = common { version = "2.10.3"; - sha256 = "sha256-B9EyDUz/9tlcWwf24lwxCFmkxuPTVW7HFYvp0C4xGbc="; + hash = "sha256-B9EyDUz/9tlcWwf24lwxCFmkxuPTVW7HFYvp0C4xGbc="; patches = [ ./patches/flaky-tests.patch patch-non-existing-output @@ -148,7 +148,7 @@ in lib.makeExtensible (self: { nix_2_11 = common { version = "2.11.1"; - sha256 = "sha256-qCV65kw09AG+EkdchDPq7RoeBznX0Q6Qa4yzPqobdOk="; + hash = "sha256-qCV65kw09AG+EkdchDPq7RoeBznX0Q6Qa4yzPqobdOk="; patches = [ ./patches/flaky-tests.patch patch-non-existing-output @@ -159,7 +159,7 @@ in lib.makeExtensible (self: { nix_2_12 = common { version = "2.12.1"; - sha256 = "sha256-GmHKhq0uFtdOiJnuBwj2YwlZjvh6YTkfQZgeu4e0dLU="; + hash = "sha256-GmHKhq0uFtdOiJnuBwj2YwlZjvh6YTkfQZgeu4e0dLU="; patches = [ ./patches/flaky-tests.patch patch-monitorfdhup @@ -169,20 +169,42 @@ in lib.makeExtensible (self: { nix_2_13 = common { version = "2.13.3"; - sha256 = "sha256-jUc2ccTR8f6MGY2pUKgujm+lxSPNGm/ZAP+toX+nMNc="; + hash = "sha256-jUc2ccTR8f6MGY2pUKgujm+lxSPNGm/ZAP+toX+nMNc="; }; nix_2_14 = common { version = "2.14.1"; - sha256 = "sha256-5aCmGZbsFcLIckCDfvnPD4clGPQI7qYAqHYlttN/Wkg="; + hash = "sha256-5aCmGZbsFcLIckCDfvnPD4clGPQI7qYAqHYlttN/Wkg="; }; nix_2_15 = common { - version = "2.15.0"; - sha256 = "sha256-hNHfvmb1bIWwqFT5nesQgwh4V0OlyZHxj5ZVSQbZ+p4="; + version = "2.15.1"; + hash = "sha256-o7bxsNeq2LF6/dTl+lT2k50bSItkID80/uoZYVtlxro="; }; - stable = self.nix_2_13; + nix_2_16 = common { + version = "2.16.1"; + hash = "sha256-/XCWa2osNFIpPC5MkxlX6qTZf/DaTLwS3LWN0SRFiuU="; + }; - unstable = self.nix_2_15; + # The minimum Nix version supported by Nixpkgs + # Note that some functionality *might* have been backported into this Nix version, + # making this package an inaccurate representation of what features are available + # in the actual lowest minver.nix *patch* version. + minimum = + let + minver = import ../../../../lib/minver.nix; + major = lib.versions.major minver; + minor = lib.versions.minor minver; + attribute = "nix_${major}_${minor}"; + nix = self.${attribute}; + in + if ! self ? ${attribute} then + throw "The minimum supported Nix version is ${minver} (declared in lib/minver.nix), but pkgs.nixVersions.${attribute} does not exist." + else + nix; + + stable = self.nix_2_15; + + unstable = self.nix_2_16; }) diff --git a/pkgs/tools/security/arti/default.nix b/pkgs/tools/security/arti/default.nix index bdd7bf39548d7..f7945cdedd3dd 100644 --- a/pkgs/tools/security/arti/default.nix +++ b/pkgs/tools/security/arti/default.nix @@ -10,7 +10,7 @@ rustPlatform.buildRustPackage rec { pname = "arti"; - version = "1.1.4"; + version = "1.1.5"; src = fetchFromGitLab { domain = "gitlab.torproject.org"; @@ -18,10 +18,10 @@ rustPlatform.buildRustPackage rec { owner = "core"; repo = "arti"; rev = "arti-v${version}"; - sha256 = "sha256-+gd/3CKdZkH/zDqGGTna7S7LkadfpzfHlX2XfemZpoE="; + sha256 = "sha256-FrawcoE+cUhRq9NPpSspUuk0ZPjnJcmDHD25syV/18E="; }; - cargoHash = "sha256-YD7KAiZM3iG9FXXHo5c1WanF7tsJBAnGvb36gxEcV5k="; + cargoHash = "sha256-34qNdizJ89fo/6AQXuB8FqvYSv/Zy5N+gXX9Yl5sywM="; nativeBuildInputs = lib.optionals stdenv.isLinux [ pkg-config ]; diff --git a/pkgs/tools/security/asnmap/default.nix b/pkgs/tools/security/asnmap/default.nix index e327aa6c07578..2295d183ea84e 100644 --- a/pkgs/tools/security/asnmap/default.nix +++ b/pkgs/tools/security/asnmap/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "asnmap"; - version = "1.0.3"; + version = "1.0.4"; src = fetchFromGitHub { owner = "projectdiscovery"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-nkDa54+4bAMtQ/s/vn7x9hAt7p+ErKMOZ70MoH45CoM="; + hash = "sha256-J5Dn5eDzwj+ApwQ3ibTsMbwCobRAb1Cli+hbf74I9VQ="; }; - vendorHash = "sha256-owpu0oANYipso33HOwwSqL8G0VDT53B9HeLQA/GvmxU="; + vendorHash = "sha256-0vU7YWZKiqi3WsjSTNvtUiskIczADgfRRC7rwCx8ho4="; # Tests require network access doCheck = false; diff --git a/pkgs/tools/security/browserpass/default.nix b/pkgs/tools/security/browserpass/default.nix index 83f34e2f066f5..ee774172f9122 100644 --- a/pkgs/tools/security/browserpass/default.nix +++ b/pkgs/tools/security/browserpass/default.nix @@ -4,6 +4,7 @@ , fetchFromGitHub , gnupg , makeWrapper +, autoPatchelfHook }: buildGoModule rec { @@ -17,7 +18,7 @@ buildGoModule rec { sha256 = "sha256-UZzOPRRiCUIG7uSSp9AEPMDN/+4cgyK47RhrI8oUx8U="; }; - nativeBuildInputs = [ makeWrapper ]; + nativeBuildInputs = [ makeWrapper autoPatchelfHook ]; vendorHash = "sha256-CjuH4ANP2bJDeA+o+1j+obbtk5/NVLet/OFS3Rms4r0="; diff --git a/pkgs/tools/security/cameradar/default.nix b/pkgs/tools/security/cameradar/default.nix index 950132ea0b8ba..4a351a696f0f0 100644 --- a/pkgs/tools/security/cameradar/default.nix +++ b/pkgs/tools/security/cameradar/default.nix @@ -37,5 +37,9 @@ buildGoModule rec { homepage = "https://github.com/Ullaakut/cameradar"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; + # Upstream issue, doesn't build with latest curl, see + # https://github.com/Ullaakut/cameradar/issues/320 + # https://github.com/andelf/go-curl/issues/84 + broken = true; }; } diff --git a/pkgs/tools/security/certsync/default.nix b/pkgs/tools/security/certsync/default.nix new file mode 100644 index 0000000000000..15878c7826fbe --- /dev/null +++ b/pkgs/tools/security/certsync/default.nix @@ -0,0 +1,37 @@ +{ lib +, python3 +, fetchFromGitHub +}: + +python3.pkgs.buildPythonApplication rec { + pname = "certsync"; + version = "unstable-2023-04-14"; + format = "pyproject"; + + src = fetchFromGitHub { + owner = "zblurx"; + repo = "certsync"; + rev = "f3c8b61f0967a6403d4c592dcbfa8921682452a6"; + hash = "sha256-7Pzss83jf3zKmgQZki18R47OWn5VniZZ/d4N8JgZs+0="; + }; + + nativeBuildInputs = with python3.pkgs; [ + poetry-core + ]; + + propagatedBuildInputs = with python3.pkgs; [ + certipy-ad + tqdm + ]; + + pythonImportsCheck = [ + "certsync" + ]; + + meta = with lib; { + description = "Dump NTDS with golden certificates and UnPAC the hash"; + homepage = "https://github.com/zblurx/certsync"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/tools/security/clamav/default.nix b/pkgs/tools/security/clamav/default.nix index aa8c68382a394..d893c83680c53 100644 --- a/pkgs/tools/security/clamav/default.nix +++ b/pkgs/tools/security/clamav/default.nix @@ -6,11 +6,11 @@ stdenv.mkDerivation rec { pname = "clamav"; - version = "1.0.1"; + version = "1.1.0"; src = fetchurl { url = "https://www.clamav.net/downloads/production/${pname}-${version}.tar.gz"; - hash = "sha256-CHLcG4L/TNfo5DI/r17kGh9mroCGXQVCkIW5RjVdhu4="; + hash = "sha256-owAg2ZzUZ/peoO+9b08YLv6/Yqn8YvxKOnssw/Vea3Q="; }; patches = [ diff --git a/pkgs/tools/security/cnspec/default.nix b/pkgs/tools/security/cnspec/default.nix index d77e501559bf6..d5c00a281879e 100644 --- a/pkgs/tools/security/cnspec/default.nix +++ b/pkgs/tools/security/cnspec/default.nix @@ -5,17 +5,17 @@ buildGoModule rec { pname = "cnspec"; - version = "8.11.0"; + version = "8.12.1"; src = fetchFromGitHub { owner = "mondoohq"; repo = "cnspec"; rev = "refs/tags/v${version}"; - hash = "sha256-ypDosK+vA7EEQsfZh9PUZrXY0uO+mPI1GC6RS80gP1o="; + hash = "sha256-ixKBfsb3e1FvvXj0iN2odD2T5x2wtYbdonQ08fbtnY8="; }; proxyVendor = true; - vendorHash = "sha256-Iyi1OoJEHHeCS+W922e+3o+pru/UhTUWwkkY2nurRGY="; + vendorHash = "sha256-COwAmcd6lcHF2YixOJG/X5PT7kDDdrpN9NdI66kRZQo="; subPackages = [ "apps/cnspec" diff --git a/pkgs/tools/security/crowdsec/default.nix b/pkgs/tools/security/crowdsec/default.nix index 08e418395a551..5ef11a7b60ebd 100644 --- a/pkgs/tools/security/crowdsec/default.nix +++ b/pkgs/tools/security/crowdsec/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "crowdsec"; - version = "1.5.1"; + version = "1.5.2"; src = fetchFromGitHub { owner = "crowdsecurity"; repo = pname; rev = "v${version}"; - hash = "sha256-Z2msr8I5VqY4c5DBFlh9oMg68SSexiN9pgZuJdYnXVQ="; + hash = "sha256-260+XsRn3Mm/zCSvfEcBQ6j715KV4t1Z0CvXdriDzCs="; }; - vendorHash = "sha256-T0gJIJDZzzOuYGNL+b6TriQsKQnAQ6JczkiAvJo1tfc="; + vendorHash = "sha256-Mto0X/LMwWU10cmC2bjzX4lzp9t+nEgsWRP3JGkl++A="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/tools/security/dnsx/default.nix b/pkgs/tools/security/dnsx/default.nix index f6ae5a5f1585d..b68edc7c6ed2f 100644 --- a/pkgs/tools/security/dnsx/default.nix +++ b/pkgs/tools/security/dnsx/default.nix @@ -1,20 +1,23 @@ -{ buildGoModule +{ lib +, buildGoModule , fetchFromGitHub -, lib }: buildGoModule rec { pname = "dnsx"; - version = "1.1.1"; + version = "1.1.4"; src = fetchFromGitHub { owner = "projectdiscovery"; repo = "dnsx"; - rev = "v${version}"; - sha256 = "sha256-5ZWBUgW3esdH+9APU5Z9Hn9VtA6VQqvUfJp5C42791k="; + rev = "refs/tags/v${version}"; + hash = "sha256-FNPAsslKmsLrUtiw+GlXLppsEk/VB02jkZLmrB8zZOI="; }; - vendorSha256 = "sha256-71JqgJZyx+9NTw08D7V5PPc84ExjGYdieCvFPTDSrs8="; + vendorSha256 = "sha256-QXmy+Ph0lKguAoIWfc41z7XH7jXGc601DD6v292Hzj0="; + + # Tests require network access + doCheck = false; meta = with lib; { description = "Fast and multi-purpose DNS toolkit"; @@ -25,6 +28,7 @@ buildGoModule rec { resolvers. ''; homepage = "https://github.com/projectdiscovery/dnsx"; + changelog = "https://github.com/projectdiscovery/dnsx/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/tools/security/doas/default.nix b/pkgs/tools/security/doas/default.nix index ce360d8234559..ad08cd8056bed 100644 --- a/pkgs/tools/security/doas/default.nix +++ b/pkgs/tools/security/doas/default.nix @@ -32,13 +32,11 @@ stdenv.mkDerivation rec { # Allow doas to discover binaries in /run/current-system/sw/{s,}bin and # /run/wrappers/bin ./0001-add-NixOS-specific-dirs-to-safe-PATH.patch - - # Standard environment supports "dontDisableStatic" knob, but has no - # equivalent for "--disable-shared", so I have to patch "configure" - # script instead. - ./disable-shared.patch ]; + # ./configure script does not understand `--disable-shared` + dontAddStaticConfigureFlags = true; + postPatch = '' sed -i '/\(chown\|chmod\)/d' GNUmakefile '' + lib.optionalString (withPAM && stdenv.hostPlatform.isStatic) '' diff --git a/pkgs/tools/security/doas/disable-shared.patch b/pkgs/tools/security/doas/disable-shared.patch deleted file mode 100644 index 2f8869ee69884..0000000000000 --- a/pkgs/tools/security/doas/disable-shared.patch +++ /dev/null @@ -1,13 +0,0 @@ -Accept and ignore "--disable-shared" option passed by pkgsStatic.stdenv. -Without this patch, configure phase fails with "unknown option". - ---- a/configure 1970-01-01 00:00:00.000000000 -0500 -+++ b/configure 1970-01-01 00:00:00.000000000 -0500 -@@ -46,6 +46,7 @@ - opt=${x%%=*} - var=${x#*=} - case "$opt" in -+ --disable-shared) : ;; - --prefix) PREFIX=$var ;; - --exec-prefix) EPREFIX=$var ;; - --bindir) BINDIR=$var ;; diff --git a/pkgs/tools/security/donkey/default.nix b/pkgs/tools/security/donkey/default.nix new file mode 100644 index 0000000000000..8244d7f0c2980 --- /dev/null +++ b/pkgs/tools/security/donkey/default.nix @@ -0,0 +1,54 @@ +{ stdenv +, fetchFromGitLab +, libmd +, coreutils +, lib +, testers +, donkey +}: + +stdenv.mkDerivation rec { + pname = "donkey"; + version = "1.2.0"; + + src = fetchFromGitLab { + owner = "donkey"; + repo = "donkey"; + rev = "tags/release/${version}"; + hash = "sha256-2xgb9l0Eko39HJVROAWEIP3qLg5t/5h/rm2MoXoKnJI="; + }; + sourceRoot = "source/src"; + + buildInputs = [ libmd ]; + + preInstall = '' + # don't change the owner, use global permissions: + export INSTALL_PROGRAM="${coreutils}/bin/install -m 555" + export INSTALL_DATA="${coreutils}/bin/install -m 444" + ''; + + passthru.tests.version = testers.testVersion { package = donkey; }; + + meta = with lib; { + description = "an alternative for S/KEY's 'key' command."; + longDescription = '' +Donkey is an alternative for S/KEY's "key" command. The new feature that +the original key doesn't have is print an entry for skeykeys as +follows; + + kazu 0099 al02004 115d83956f1089b6 Apr 26,1995 22:13:27 + +This means that donkey is also an alternative for "keyinit". Since the +entry is printed to stdout (not to /etc/skeykeys), you can easily send +it to a remote operator by e-mail (with a PGP signature or something). +So, it is possible to initiate S/KEY without logging in from the console of +the host. + +The name "Donkey" is an acronym of "Don't Key". + ''; + homepage = "https://devel.ringlet.net/security/donkey"; + license = licenses.gpl2; + maintainers = with maintainers; [ raboof ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/tools/security/dontgo403/default.nix b/pkgs/tools/security/dontgo403/default.nix index 4588d6a2d94a1..2fdd35e68fe83 100644 --- a/pkgs/tools/security/dontgo403/default.nix +++ b/pkgs/tools/security/dontgo403/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "dontgo403"; - version = "0.9.1"; + version = "0.9.3"; src = fetchFromGitHub { owner = "devploit"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-FmC+VEVZVpKEDV8IH8D+lt0oHulu2AOD8uUrHxno/Bk="; + hash = "sha256-WGI98IUyvcPGD9IbIF1ZWa72Dnork6xE+XoVYUx1zAc="; }; - vendorHash = "sha256-WzTen78m/CZypdswwncuVzU3iChBDS26URWGSWQCdfk="; + vendorHash = "sha256-IGnTbuaQH8A6aKyahHMd2RyFRh4WxZ3Vx/A9V3uelRg="; meta = with lib; { description = "Tool to bypass 40X response codes"; diff --git a/pkgs/tools/security/exploitdb/default.nix b/pkgs/tools/security/exploitdb/default.nix index edb8fec31440e..c3a13904b119f 100644 --- a/pkgs/tools/security/exploitdb/default.nix +++ b/pkgs/tools/security/exploitdb/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "exploitdb"; - version = "2023-05-27"; + version = "2023-06-05"; src = fetchFromGitLab { owner = "exploit-database"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-7C4lihyGt8jiCtHXzE1iik0vsVRlsoKgvFgiV9iqtoQ="; + hash = "sha256-OhcYBct+ADyEk3VszQr/A+igB4mI/1BBedNzAfuHQ+k="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/security/gitleaks/default.nix b/pkgs/tools/security/gitleaks/default.nix index bffe163dbf2e9..19a186a445013 100644 --- a/pkgs/tools/security/gitleaks/default.nix +++ b/pkgs/tools/security/gitleaks/default.nix @@ -8,13 +8,13 @@ buildGoModule rec { pname = "gitleaks"; - version = "8.16.3"; + version = "8.16.4"; src = fetchFromGitHub { owner = "zricethezav"; repo = pname; rev = "v${version}"; - hash = "sha256-WukTYi7iqagOLpx8KATEittlM6OvIfxDYiNTdsotjTY="; + hash = "sha256-j07Uw9MVNUSHw8wwKPal1ENywS4vk/blU11DElhgdFU="; }; vendorHash = "sha256-Ev0/CSpwJDmc+Dvu/bFDzsgsq80rWImJWXNAUqYHgoE="; diff --git a/pkgs/tools/security/gotrue/supabase.nix b/pkgs/tools/security/gotrue/supabase.nix index 1ef4ec45af260..43a28e26d415f 100644 --- a/pkgs/tools/security/gotrue/supabase.nix +++ b/pkgs/tools/security/gotrue/supabase.nix @@ -7,13 +7,13 @@ buildGoModule rec { pname = "gotrue"; - version = "2.69.1"; + version = "2.69.2"; src = fetchFromGitHub { owner = "supabase"; repo = pname; rev = "v${version}"; - hash = "sha256-OMAicqkwx/9OjM3Q42LOrv2gIkUNV7I9+UGuxNfL39U="; + hash = "sha256-Jx9TDTJkf5Bp4VWhJ2j04bqp6zXlrOBriSHLhW414h8="; }; vendorHash = "sha256-gv6ZzteQmx8AwYv6+EbZMSVKttf2T0okQyvfrvKpozM="; diff --git a/pkgs/tools/security/gpg-tui/default.nix b/pkgs/tools/security/gpg-tui/default.nix index da591cd1fefb6..99a99e74c4a51 100644 --- a/pkgs/tools/security/gpg-tui/default.nix +++ b/pkgs/tools/security/gpg-tui/default.nix @@ -17,16 +17,16 @@ rustPlatform.buildRustPackage rec { pname = "gpg-tui"; - version = "0.9.5"; + version = "0.9.6"; src = fetchFromGitHub { owner = "orhun"; repo = "gpg-tui"; rev = "v${version}"; - hash = "sha256-WBOjdcqBHvXYAFEsv0249W7HrABDsZe9pfc3jM9LUSA="; + hash = "sha256-vzdQqiAguwXZ3QNlctnfsuFxNYwBLICVqonFKXdMvSQ="; }; - cargoHash = "sha256-0xNCQQG9S2sqxfc3MIZnftCSrVsrk4DO/cIM0iW33oI="; + cargoHash = "sha256-clxpTayrWSu0esu8L4/Kf8oKk8zAK3XJwT8IJqHoZpw="; nativeBuildInputs = [ gpgme # for gpgme-config diff --git a/pkgs/tools/security/grype/default.nix b/pkgs/tools/security/grype/default.nix index 283a6ab908966..551a845ba19c5 100644 --- a/pkgs/tools/security/grype/default.nix +++ b/pkgs/tools/security/grype/default.nix @@ -7,13 +7,13 @@ buildGoModule rec { pname = "grype"; - version = "0.62.1"; + version = "0.62.3"; src = fetchFromGitHub { owner = "anchore"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-DuM4hgM8jXFSoNQv8wI5Mkpzy37txNey1CSeMJH888s="; + hash = "sha256-GZj0grVqpIE+BwCUpcDnoa7Lnm+FXu4wNbfINA9uuzQ="; # populate values that require us to use git. By doing this in postFetch we # can delete .git afterwards and maintain better reproducibility of the src. leaveDotGit = true; @@ -28,7 +28,7 @@ buildGoModule rec { proxyVendor = true; - vendorHash = "sha256-GSVKeaAf4/6SWHdh+zRhFnzyJ4tv4yGGh0YfKTa0aLQ="; + vendorHash = "sha256-pK8Gse/Qb+Z3QHEq35gB72Lvsm7ot4HmH62sxhVopv8="; nativeBuildInputs = [ installShellFiles diff --git a/pkgs/tools/security/hash-slinger/default.nix b/pkgs/tools/security/hash-slinger/default.nix index d639c1aa211ce..0f0eeeb6b2af9 100644 --- a/pkgs/tools/security/hash-slinger/default.nix +++ b/pkgs/tools/security/hash-slinger/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "hash-slinger"; - version = "3.2"; + version = "3.3"; src = fetchFromGitHub { owner = "letoams"; repo = pname; rev = version; - sha256 = "sha256-PfOEGqPMGLixoqHENZnxOv9nK+dYMqe6P0k+ZiJMik0="; + sha256 = "sha256-c6IZHUFuhcccUWZYSOUGFbKpTtwMclIvEvDX8gE5d8o="; }; pythonPath = with python3.pkgs; [ diff --git a/pkgs/tools/security/httpdump/default.nix b/pkgs/tools/security/httpdump/default.nix index 0bab990f17415..d745adc50d5d8 100644 --- a/pkgs/tools/security/httpdump/default.nix +++ b/pkgs/tools/security/httpdump/default.nix @@ -6,25 +6,25 @@ buildGoModule rec { pname = "httpdump"; - version = "20210126-${lib.strings.substring 0 7 rev}"; - rev = "d2e0deadca5f9ec2544cb252da3c450966d1860e"; + version = "unstable-2023-05-07"; src = fetchFromGitHub { owner = "hsiafan"; repo = pname; - inherit rev; - sha256 = "0yh8kxy1k23lln09b614limwk9y59r7cn5qhbnzc06ga4mxfczv2"; + rev = "e971e00e0136d5c770c4fdddb1c2095327d419d8"; + hash = "sha256-3BzvIaZKBr/HHplJe5hM7u8kigmMHxCvkiVXFZopUCQ="; }; - vendorSha256 = null; #vendorSha256 = ""; + vendorHash = "sha256-NKCAzx1+BkqZGeAORl7gCA7f9PSsyKxP2eggZyBB2l8="; propagatedBuildInputs = [ libpcap ]; + ldflags = [ "-s" "-w" ]; + meta = with lib; { description = "Parse and display HTTP traffic from network device or pcap file"; homepage = "https://github.com/hsiafan/httpdump"; license = with licenses; [ bsd2 ]; maintainers = with maintainers; [ fab ]; - broken = true; # vendor isn't reproducible with go > 1.17: nix-build -A $name.go-modules --check }; } diff --git a/pkgs/tools/security/kubernetes-polaris/default.nix b/pkgs/tools/security/kubernetes-polaris/default.nix index b086b6be5b491..e4c21f5d54fa3 100644 --- a/pkgs/tools/security/kubernetes-polaris/default.nix +++ b/pkgs/tools/security/kubernetes-polaris/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "kubernetes-polaris"; - version = "7.4.2"; + version = "8.0.0"; src = fetchFromGitHub { owner = "FairwindsOps"; repo = "polaris"; rev = version; - sha256 = "sha256-bapZ3snFq0YWZOT5IBwQaC0kwTs3sOVvbYFlL95LeNM="; + sha256 = "sha256-JNbRXDpEO0luttI1WDApMWwPhtKLUABX+R8W/g+NAJk="; }; vendorHash = "sha256-SwHJRw75pP1zwi9ZMfUfcXt788pURM1KSbTNQF6XVqk="; diff --git a/pkgs/tools/security/kubescape/default.nix b/pkgs/tools/security/kubescape/default.nix index 04aa261a01c4f..df6cc2eea9641 100644 --- a/pkgs/tools/security/kubescape/default.nix +++ b/pkgs/tools/security/kubescape/default.nix @@ -6,17 +6,17 @@ buildGoModule rec { pname = "kubescape"; - version = "2.3.4"; + version = "2.3.5"; src = fetchFromGitHub { owner = "kubescape"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-REUB7EsRZtgOImMaGyX2UGwWjTYZGfrIlwPNHV0NjbU="; + hash = "sha256-jCtEy2W3srfu65HABTgzAhFKlECtpDtR8mary5r/jW4="; fetchSubmodules = true; }; - vendorHash = "sha256-VLEyfnLyXujzMQd/HBfjQ6MQcM/hav0SCEl3G2lxKbo="; + vendorHash = "sha256-mcaA0PLQFoL/Vc+Te2rtzyJHueJpYfn1VjPF9qxi4NI="; nativeBuildInputs = [ installShellFiles diff --git a/pkgs/tools/security/metasploit/Gemfile b/pkgs/tools/security/metasploit/Gemfile index aa82c6d0fe8cb..a670db702291d 100644 --- a/pkgs/tools/security/metasploit/Gemfile +++ b/pkgs/tools/security/metasploit/Gemfile @@ -1,4 +1,4 @@ # frozen_string_literal: true source "https://rubygems.org" -gem "metasploit-framework", git: "https://github.com/rapid7/metasploit-framework", ref: "refs/tags/6.3.17" +gem "metasploit-framework", git: "https://github.com/rapid7/metasploit-framework", ref: "refs/tags/6.3.19" diff --git a/pkgs/tools/security/metasploit/Gemfile.lock b/pkgs/tools/security/metasploit/Gemfile.lock index 67ae1e4e8c9a0..c951dfe7a982f 100644 --- a/pkgs/tools/security/metasploit/Gemfile.lock +++ b/pkgs/tools/security/metasploit/Gemfile.lock @@ -1,15 +1,16 @@ GIT remote: https://github.com/rapid7/metasploit-framework - revision: 3c284b7c96b88e71001fbff4c94a24ee553a8e78 - ref: refs/tags/6.3.17 + revision: 5465dc93856c5e82f37c297a627339278cc1ecec + ref: refs/tags/6.3.19 specs: - metasploit-framework (6.3.17) + metasploit-framework (6.3.19) actionpack (~> 7.0) activerecord (~> 7.0) activesupport (~> 7.0) aws-sdk-ec2 aws-sdk-iam aws-sdk-s3 + aws-sdk-ssm bcrypt bcrypt_pbkdf bootsnap @@ -101,25 +102,25 @@ GEM remote: https://rubygems.org/ specs: Ascii85 (1.1.0) - actionpack (7.0.4.3) - actionview (= 7.0.4.3) - activesupport (= 7.0.4.3) - rack (~> 2.0, >= 2.2.0) + actionpack (7.0.5) + actionview (= 7.0.5) + activesupport (= 7.0.5) + rack (~> 2.0, >= 2.2.4) rack-test (>= 0.6.3) rails-dom-testing (~> 2.0) rails-html-sanitizer (~> 1.0, >= 1.2.0) - actionview (7.0.4.3) - activesupport (= 7.0.4.3) + actionview (7.0.5) + activesupport (= 7.0.5) builder (~> 3.1) erubi (~> 1.4) rails-dom-testing (~> 2.0) rails-html-sanitizer (~> 1.1, >= 1.2.0) - activemodel (7.0.4.3) - activesupport (= 7.0.4.3) - activerecord (7.0.4.3) - activemodel (= 7.0.4.3) - activesupport (= 7.0.4.3) - activesupport (7.0.4.3) + activemodel (7.0.5) + activesupport (= 7.0.5) + activerecord (7.0.5) + activemodel (= 7.0.5) + activesupport (= 7.0.5) + activesupport (7.0.5) concurrent-ruby (~> 1.0, >= 1.0.2) i18n (>= 1.6, < 2) minitest (>= 5.1) @@ -130,25 +131,28 @@ GEM arel-helpers (2.14.0) activerecord (>= 3.1.0, < 8) aws-eventstream (1.2.0) - aws-partitions (1.767.0) - aws-sdk-core (3.173.0) + aws-partitions (1.774.0) + aws-sdk-core (3.174.0) aws-eventstream (~> 1, >= 1.0.2) aws-partitions (~> 1, >= 1.651.0) aws-sigv4 (~> 1.5) jmespath (~> 1, >= 1.6.1) - aws-sdk-ec2 (1.380.0) - aws-sdk-core (~> 3, >= 3.165.0) + aws-sdk-ec2 (1.381.0) + aws-sdk-core (~> 3, >= 3.174.0) aws-sigv4 (~> 1.1) - aws-sdk-iam (1.77.0) - aws-sdk-core (~> 3, >= 3.165.0) + aws-sdk-iam (1.78.0) + aws-sdk-core (~> 3, >= 3.174.0) aws-sigv4 (~> 1.1) - aws-sdk-kms (1.64.0) - aws-sdk-core (~> 3, >= 3.165.0) + aws-sdk-kms (1.65.0) + aws-sdk-core (~> 3, >= 3.174.0) aws-sigv4 (~> 1.1) - aws-sdk-s3 (1.122.0) - aws-sdk-core (~> 3, >= 3.165.0) + aws-sdk-s3 (1.123.1) + aws-sdk-core (~> 3, >= 3.174.0) aws-sdk-kms (~> 1) aws-sigv4 (~> 1.4) + aws-sdk-ssm (1.151.0) + aws-sdk-core (~> 3, >= 3.174.0) + aws-sigv4 (~> 1.1) aws-sigv4 (1.5.2) aws-eventstream (~> 1, >= 1.0.2) bcrypt (3.1.18) @@ -180,11 +184,11 @@ GEM eventmachine (1.2.7) faker (3.2.0) i18n (>= 1.8.11, < 2) - faraday (2.7.4) + faraday (2.7.5) faraday-net_http (>= 2.0, < 3.1) ruby2_keywords (>= 0.0.4) faraday-net_http (3.0.2) - faraday-retry (2.1.0) + faraday-retry (2.2.0) faraday (~> 2.0) faye-websocket (0.11.2) eventmachine (>= 0.12.0) @@ -205,10 +209,10 @@ GEM domain_name (~> 0.5) http_parser.rb (0.8.0) httpclient (2.8.3) - i18n (1.13.0) + i18n (1.14.1) concurrent-ruby (~> 1.0) io-console (0.6.0) - irb (1.6.4) + irb (1.7.0) reline (>= 0.3.0) jmespath (1.6.2) jsobfu (0.4.2) @@ -271,7 +275,7 @@ GEM network_interface (0.0.2) nexpose (7.3.0) nio4r (2.5.9) - nokogiri (1.15.1) + nokogiri (1.15.2) mini_portile2 (~> 2.8.2) racc (~> 1.4) nori (2.6.0) @@ -293,7 +297,7 @@ GEM ttfunk pg (1.5.3) public_suffix (5.0.1) - puma (6.2.2) + puma (6.3.0) nio4r (~> 2.0) racc (1.6.2) rack (2.2.7) @@ -304,11 +308,12 @@ GEM rails-dom-testing (2.0.3) activesupport (>= 4.2.0) nokogiri (>= 1.6) - rails-html-sanitizer (1.5.0) - loofah (~> 2.19, >= 2.19.1) - railties (7.0.4.3) - actionpack (= 7.0.4.3) - activesupport (= 7.0.4.3) + rails-html-sanitizer (1.6.0) + loofah (~> 2.21) + nokogiri (~> 1.14) + railties (7.0.5) + actionpack (= 7.0.5) + activesupport (= 7.0.5) method_source rake (>= 12.2) thor (~> 1.0) @@ -320,7 +325,7 @@ GEM recog (3.1.1) nokogiri redcarpet (3.6.0) - reline (0.3.4) + reline (0.3.5) io-console (~> 0.5) rex-arch (0.1.14) rex-text diff --git a/pkgs/tools/security/metasploit/default.nix b/pkgs/tools/security/metasploit/default.nix index 8c96570d891c0..22bbcca64c974 100644 --- a/pkgs/tools/security/metasploit/default.nix +++ b/pkgs/tools/security/metasploit/default.nix @@ -15,13 +15,13 @@ let }; in stdenv.mkDerivation rec { pname = "metasploit-framework"; - version = "6.3.17"; + version = "6.3.19"; src = fetchFromGitHub { owner = "rapid7"; repo = "metasploit-framework"; rev = version; - sha256 = "sha256-IXEsmLgvd0FQ5Bgs68LHWM0Vk/yIYlkR1m/olSC5CNA="; + sha256 = "sha256-eo3heJb6JVFl/Ik3aSsqdu+NLuS5ot3pDoseJOUjz0w="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/security/metasploit/gemset.nix b/pkgs/tools/security/metasploit/gemset.nix index 396c7ac2b1dbd..17a5a6cd3e446 100644 --- a/pkgs/tools/security/metasploit/gemset.nix +++ b/pkgs/tools/security/metasploit/gemset.nix @@ -4,50 +4,50 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1cb0hqkfkc0b9s7swvi4nf64c24i3ma1gv09anr8a81k56s0rwxd"; + sha256 = "0w717izq6k7wl2j6zn4516kg2iwg3zgdzja6b6gpk6y5nccr04hw"; type = "gem"; }; - version = "7.0.4.3"; + version = "7.0.5"; }; actionview = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1h9027sqzfcbc84dnzw8nxjyg15zrk1y2fc0468wg1xi9nmyw96z"; + sha256 = "1z0xvdal339w7jvk7a5py0c1q5xh588vqrilgxizkvzm3hwf48a2"; type = "gem"; }; - version = "7.0.4.3"; + version = "7.0.5"; }; activemodel = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0ymhsxgdb68zgf4zp07g2bymmpgn0b9r38avn9pagz1p5zy1ql9v"; + sha256 = "0cjbk1xl6jl2d6sczpxnr8da7zbmshmrghqhqdcwqqzl6chcy2si"; type = "gem"; }; - version = "7.0.4.3"; + version = "7.0.5"; }; activerecord = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "01wb98i2zsbb4jcb4i6z72vb05wiks4hv9chc66h1rsxrv0zi4dv"; + sha256 = "04x0bz3051linhmi52cfg31nsm4sgg27m7wp9p0cxrxdwc7q0bjl"; type = "gem"; }; - version = "7.0.4.3"; + version = "7.0.5"; }; activesupport = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "15m0b1im6i401ab51vzr7f8nk8kys1qa0snnl741y3sir3xd07jp"; + sha256 = "1c7k5i6531z5il4q1jnbrv7x7zcl3bgnxp5fzl71rzigk6zn53ym"; type = "gem"; }; - version = "7.0.4.3"; + version = "7.0.5"; }; addressable = { groups = ["default"]; @@ -104,60 +104,70 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "01pqjxjqc4p2bws67sbvff4kfggzfq0vwgyf9pf6pfmw4z2518m9"; + sha256 = "1xn5b62gmp1l2xia49spny1yx3zf517a9dn1djk1wbaxpw36v4rj"; type = "gem"; }; - version = "1.767.0"; + version = "1.774.0"; }; aws-sdk-core = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "10djgbz4k9w3axka8xrhf97h9yh9svi5g5xvncfwnkg6h22w2177"; + sha256 = "1r29w7p08qp24z3qqvh5g7gchijlxw2x0bx9abcq7rnnzyqcd55n"; type = "gem"; }; - version = "3.173.0"; + version = "3.174.0"; }; aws-sdk-ec2 = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0r4b0rcbbzrl8acmzy276y9amcv9yqpr9s3k0xqxkp8l5zdrwz9w"; + sha256 = "0zliqz8b08lzp1i75cr4gyq3a9vcz89qya3ax8r3zj8z2qhsrmab"; type = "gem"; }; - version = "1.380.0"; + version = "1.381.0"; }; aws-sdk-iam = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0crb3m1apj6kszp9aqmc2lqw99i1xkxbp5fl1s5748718kld4s8v"; + sha256 = "1njij81840f8nfd5rspyjr2n47mlzracb8vx1z77xc0n65v5p0fz"; type = "gem"; }; - version = "1.77.0"; + version = "1.78.0"; }; aws-sdk-kms = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1bcm0c9f7xy5qj5f0z3gddqslhb2vzrj9smc39pgqyq4jmn5kpj0"; + sha256 = "17rva6b434g9is4x2d2k434y74b21ffqhmyx4akpxssa67kqsx05"; type = "gem"; }; - version = "1.64.0"; + version = "1.65.0"; }; aws-sdk-s3 = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "01cryf8kfkmlsxb327szcwcagsp7lss5gmk6zxlgap65lv8bc7rx"; + sha256 = "0bafrg895ps1v2fixlm9vsl65qs6ll0dd0n06vk1l0z0qs6xj1ra"; type = "gem"; }; - version = "1.122.0"; + version = "1.123.1"; + }; + aws-sdk-ssm = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0qz1x5dizp32n1g3fshabfkm89yx83l1ak1dhjldad15ix4lga0i"; + type = "gem"; + }; + version = "1.151.0"; }; aws-sigv4 = { groups = ["default"]; @@ -364,10 +374,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1f20vjx0ywx0zdb4dfx4cpa7kd51z6vg7dw5hs35laa45dy9g9pj"; + sha256 = "1fa3y42bhz2ahp33labk8sfw1al9wrr1pkar6i8w9mdpsccygzg4"; type = "gem"; }; - version = "2.7.4"; + version = "2.7.5"; }; faraday-net_http = { groups = ["default"]; @@ -384,10 +394,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1zz0w4jpfa6h1wlirfcs9hzvlpijnd1nnmjq94w5yv50585p279n"; + sha256 = "1ia19zgni6cw96rvsr0s004vjs9m2r6la4s00zcff36xaia4m0l0"; type = "gem"; }; - version = "2.1.0"; + version = "2.2.0"; }; faye-websocket = { groups = ["default"]; @@ -504,10 +514,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1yk33slipi3i1kydzrrchbi7cgisaxym6pgwlzx7ir8vjk6wl90x"; + sha256 = "0qaamqsh5f3szhcakkak8ikxlzxqnv49n2p7504hcz2l0f4nj0wx"; type = "gem"; }; - version = "1.13.0"; + version = "1.14.1"; }; io-console = { groups = ["default"]; @@ -524,10 +534,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "04j4qaj3siaddjz5y310dh54zxsp50x68cshl51fiwayi7khw556"; + sha256 = "0z7ksjik7phf6ygshg9bp6ldd38dfgxmgr73yipkpqq7b426hclq"; type = "gem"; }; - version = "1.6.4"; + version = "1.7.0"; }; jmespath = { groups = ["default"]; @@ -624,12 +634,12 @@ platforms = []; source = { fetchSubmodules = false; - rev = "3c284b7c96b88e71001fbff4c94a24ee553a8e78"; - sha256 = "1l08p4h9bs3gsq8mjql8zj9ibkaqqz1fnb0qwi842xrgp2c2qw91"; + rev = "5465dc93856c5e82f37c297a627339278cc1ecec"; + sha256 = "0k6g4gjj87lb1vlxv8mrwhp8vvvn58mnjdw9zijm29gsjrwf33bs"; type = "git"; url = "https://github.com/rapid7/metasploit-framework"; }; - version = "6.3.17"; + version = "6.3.19"; }; metasploit-model = { groups = ["default"]; @@ -827,10 +837,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "10zmnzk0b6v48s9nyrgnidcinn06m52ph3mzzcjh5q7xrzii3mb8"; + sha256 = "1mr2ibfk874ncv0qbdkynay738w2mfinlkhnbd5lyk5yiw5q1p10"; type = "gem"; }; - version = "1.15.1"; + version = "1.15.2"; }; nori = { groups = ["default"]; @@ -947,10 +957,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0yf4jmkyy8das7pj1xzwllfvzkhq2p6p534j61d9h4wz3nfyf0s5"; + sha256 = "1v7fmv0n4bhdcwh60dgza44iqai5pg34f5pzm4vh4i5fwx7mpqxh"; type = "gem"; }; - version = "6.2.2"; + version = "6.3.0"; }; racc = { groups = ["default"]; @@ -1007,20 +1017,20 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0ygav4xyq943qqyhjmi3mzirn180j565mc9h5j4css59x1sn0cmz"; + sha256 = "1pm4z853nyz1bhhqr7fzl44alnx4bjachcr6rh6qjj375sfz3sc6"; type = "gem"; }; - version = "1.5.0"; + version = "1.6.0"; }; railties = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0w6pib1s0kmfnhjvxwh48flz7w4gy8y961n821w8by7d1g83vjwq"; + sha256 = "0kn3cx00jnb7bjnh1k2q0dxk0r7nl1a0krgyk5ykxw1wcac81wyw"; type = "gem"; }; - version = "7.0.4.3"; + version = "7.0.5"; }; rake = { groups = ["default"]; @@ -1077,10 +1087,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1c0vm2qd6yqya75zymh3szlq7k7wb1a53cidk3h5yr4g3wvhfija"; + sha256 = "0k5rqi4b7qnwxslc54k0nnfg97842i6hmjnyy79pqyydwwcjhj0i"; type = "gem"; }; - version = "0.3.4"; + version = "0.3.5"; }; rex-arch = { groups = ["default"]; diff --git a/pkgs/tools/security/nuclei/default.nix b/pkgs/tools/security/nuclei/default.nix index e28a529020f6c..778f5e6ca008d 100644 --- a/pkgs/tools/security/nuclei/default.nix +++ b/pkgs/tools/security/nuclei/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "nuclei"; - version = "2.9.4"; + version = "2.9.6"; src = fetchFromGitHub { owner = "projectdiscovery"; repo = pname; rev = "v${version}"; - hash = "sha256-WqbJlpKwkbYWvSwVqhcPyIeKdlaNOvxmJh3XKi7b/Do="; + hash = "sha256-hltXm+NXExmO9IuwdfuET9+PaRby9pLAE/4ac7xQqvE="; }; - vendorHash = "sha256-yIGK7Fyr616XrZ5tQCdzontlCFegn9utrV8ZXhUQzp4="; + vendorHash = "sha256-geQBa0caKjDQD3AlVNhU8cmM9mFSR+Ix0HjxKKadSqE="; modRoot = "./v2"; subPackages = [ diff --git a/pkgs/tools/security/onlykey/generate.sh b/pkgs/tools/security/onlykey/generate.sh index ec37304923238..b6afb497463e6 100755 --- a/pkgs/tools/security/onlykey/generate.sh +++ b/pkgs/tools/security/onlykey/generate.sh @@ -2,4 +2,4 @@ #! nix-shell -i bash -p nodePackages.node2nix # XXX: --development is given here because we need access to gulp in order to build OnlyKey. -exec node2nix --nodejs-14 --development -i package.json -c onlykey.nix -e ../../../development/node-packages/node-env.nix --no-copy-node-env +exec node2nix --nodejs-18 --development -i package.json -c onlykey.nix -e ../../../development/node-packages/node-env.nix --no-copy-node-env diff --git a/pkgs/tools/security/onlykey/node-packages.nix b/pkgs/tools/security/onlykey/node-packages.nix index e5febc9d659aa..001ff6916708b 100644 --- a/pkgs/tools/security/onlykey/node-packages.nix +++ b/pkgs/tools/security/onlykey/node-packages.nix @@ -4,40 +4,49 @@ let sources = { - "@babel/code-frame-7.16.7" = { - name = "_at_babel_slash_code-frame"; - packageName = "@babel/code-frame"; - version = "7.16.7"; + "@eslint-community/eslint-utils-4.4.0" = { + name = "_at_eslint-community_slash_eslint-utils"; + packageName = "@eslint-community/eslint-utils"; + version = "4.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.16.7.tgz"; - sha512 = "iAXqUn8IIeBTNd72xsFlgaXHkMBMt6y4HJp1tIaK465CWLT/fG1aqB7ykr95gHHmlBdGbFeWWfyB4NJJ0nmeIg=="; + url = "https://registry.npmjs.org/@eslint-community/eslint-utils/-/eslint-utils-4.4.0.tgz"; + sha512 = "1/sA4dwrzBAyeUoQ6oxahHKmrZvsnLCg4RfxW3ZFGGmQkSNQPFNLV9CUEFQP1x9EYXHTo5p6xdhZM1Ne9p/AfA=="; }; }; - "@babel/helper-validator-identifier-7.16.7" = { - name = "_at_babel_slash_helper-validator-identifier"; - packageName = "@babel/helper-validator-identifier"; - version = "7.16.7"; + "@eslint-community/regexpp-4.5.1" = { + name = "_at_eslint-community_slash_regexpp"; + packageName = "@eslint-community/regexpp"; + version = "4.5.1"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-validator-identifier/-/helper-validator-identifier-7.16.7.tgz"; - sha512 = "hsEnFemeiW4D08A5gUAZxLBTXpZ39P+a+DGDsHw1yxqyQ/jzFEnxf5uTEGp+3bzAbNOxU1paTgYS4ECU/IgfDw=="; + url = "https://registry.npmjs.org/@eslint-community/regexpp/-/regexpp-4.5.1.tgz"; + sha512 = "Z5ba73P98O1KUYCCJTUeVpja9RcGoMdncZ6T49FCUl2lN38JtCJ+3WgIDBv0AuY4WChU5PmtJmOCTlN6FZTFKQ=="; }; }; - "@babel/highlight-7.17.12" = { - name = "_at_babel_slash_highlight"; - packageName = "@babel/highlight"; - version = "7.17.12"; + "@eslint/eslintrc-2.0.3" = { + name = "_at_eslint_slash_eslintrc"; + packageName = "@eslint/eslintrc"; + version = "2.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/@eslint/eslintrc/-/eslintrc-2.0.3.tgz"; + sha512 = "+5gy6OQfk+xx3q0d6jGZZC3f3KzAkXc/IanVxd1is/VIIziRqqt3ongQz0FiTUXqTk0c7aDB3OaFuKnuSoJicQ=="; + }; + }; + "@eslint/js-8.42.0" = { + name = "_at_eslint_slash_js"; + packageName = "@eslint/js"; + version = "8.42.0"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/highlight/-/highlight-7.17.12.tgz"; - sha512 = "7yykMVF3hfZY2jsHZEEgLc+3x4o1O+fYyULu11GynEUQNwB6lua+IIQn1FiJxNucd5UlyJryrwsOh8PL9Sn8Qg=="; + url = "https://registry.npmjs.org/@eslint/js/-/js-8.42.0.tgz"; + sha512 = "6SWlXpWU5AvId8Ac7zjzmIOqMOba/JWY8XZ4A7q7Gn1Vlfg/SFFIlrtHXt9nPn4op9ZPAkl91Jao+QQv3r/ukw=="; }; }; - "@gulp-sourcemaps/identity-map-1.0.2" = { + "@gulp-sourcemaps/identity-map-2.0.1" = { name = "_at_gulp-sourcemaps_slash_identity-map"; packageName = "@gulp-sourcemaps/identity-map"; - version = "1.0.2"; + version = "2.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/@gulp-sourcemaps/identity-map/-/identity-map-1.0.2.tgz"; - sha512 = "ciiioYMLdo16ShmfHBXJBOFm3xPC4AuwO4xeRpFeHz7WK9PYsWCmigagG2XyzZpubK4a3qNKoUBDhbzHfa50LQ=="; + url = "https://registry.npmjs.org/@gulp-sourcemaps/identity-map/-/identity-map-2.0.1.tgz"; + sha512 = "Tb+nSISZku+eQ4X1lAkevcQa+jknn/OVUgZ3XCxEKIsLsqYuPoJwJOPQeaOk75X3WPftb29GWY1eqE7GLsXb1Q=="; }; }; "@gulp-sourcemaps/map-sources-1.0.0" = { @@ -49,13 +58,58 @@ let sha512 = "o/EatdaGt8+x2qpb0vFLC/2Gug/xYPRXb6a+ET1wGYKozKN3krDWC/zZFZAtrzxJHuDL12mwdfEFKcKMNvc55A=="; }; }; - "@ungap/promise-all-settled-1.1.2" = { - name = "_at_ungap_slash_promise-all-settled"; - packageName = "@ungap/promise-all-settled"; - version = "1.1.2"; + "@humanwhocodes/config-array-0.11.10" = { + name = "_at_humanwhocodes_slash_config-array"; + packageName = "@humanwhocodes/config-array"; + version = "0.11.10"; + src = fetchurl { + url = "https://registry.npmjs.org/@humanwhocodes/config-array/-/config-array-0.11.10.tgz"; + sha512 = "KVVjQmNUepDVGXNuoRRdmmEjruj0KfiGSbS8LVc12LMsWDQzRXJ0qdhN8L8uUigKpfEHRhlaQFY0ib1tnUbNeQ=="; + }; + }; + "@humanwhocodes/module-importer-1.0.1" = { + name = "_at_humanwhocodes_slash_module-importer"; + packageName = "@humanwhocodes/module-importer"; + version = "1.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/@humanwhocodes/module-importer/-/module-importer-1.0.1.tgz"; + sha512 = "bxveV4V8v5Yb4ncFTT3rPSgZBOpCkjfK0y4oVVVJwIuDVBRMDXrPyXRL988i5ap9m9bnyEEjWfm5WkBmtffLfA=="; + }; + }; + "@humanwhocodes/object-schema-1.2.1" = { + name = "_at_humanwhocodes_slash_object-schema"; + packageName = "@humanwhocodes/object-schema"; + version = "1.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/@ungap/promise-all-settled/-/promise-all-settled-1.1.2.tgz"; - sha512 = "sL/cEvJWAnClXw0wHk85/2L0G6Sj8UB0Ctc1TEMbKSsmpRosqhwj9gWgFRZSrBr2f9tiXISwNhCPmlfqUqyb9Q=="; + url = "https://registry.npmjs.org/@humanwhocodes/object-schema/-/object-schema-1.2.1.tgz"; + sha512 = "ZnQMnLV4e7hDlUvw8H+U8ASL02SS2Gn6+9Ac3wGGLIe7+je2AeAOxPY+izIPJDfFDb7eDjev0Us8MO1iFRN8hA=="; + }; + }; + "@nodelib/fs.scandir-2.1.5" = { + name = "_at_nodelib_slash_fs.scandir"; + packageName = "@nodelib/fs.scandir"; + version = "2.1.5"; + src = fetchurl { + url = "https://registry.npmjs.org/@nodelib/fs.scandir/-/fs.scandir-2.1.5.tgz"; + sha512 = "vq24Bq3ym5HEQm2NKCr3yXDwjc7vTsEThRDnkp2DK9p1uqLR+DHurm/NOTo0KG7HYHU7eppKZj3MyqYuMBf62g=="; + }; + }; + "@nodelib/fs.stat-2.0.5" = { + name = "_at_nodelib_slash_fs.stat"; + packageName = "@nodelib/fs.stat"; + version = "2.0.5"; + src = fetchurl { + url = "https://registry.npmjs.org/@nodelib/fs.stat/-/fs.stat-2.0.5.tgz"; + sha512 = "RkhPPp2zrqDAQA/2jNhnztcPAlv64XdhIp7a7454A5ovI7Bukxgt7MX7udwAu3zg1DcpPU0rz3VV1SeaqvY4+A=="; + }; + }; + "@nodelib/fs.walk-1.2.8" = { + name = "_at_nodelib_slash_fs.walk"; + packageName = "@nodelib/fs.walk"; + version = "1.2.8"; + src = fetchurl { + url = "https://registry.npmjs.org/@nodelib/fs.walk/-/fs.walk-1.2.8.tgz"; + sha512 = "oGB+UxlgWcgQkgwo8GcEGwemoTFt3FIO9ababBmaGwXIoBKZ+GTy0pP185beGg7Llih/NSHSV2XAs1lnznocSg=="; }; }; "abbrev-1.1.1" = { @@ -67,22 +121,22 @@ let sha512 = "nne9/IiQ/hzIhY6pdDnbBtz7DjPTKrY00P/zvPSm5pOFkl6xuGrGnXn/VtTNNfNtAfZ9/1RtehkszU9qcTii0Q=="; }; }; - "acorn-5.7.4" = { + "acorn-6.4.2" = { name = "acorn"; packageName = "acorn"; - version = "5.7.4"; + version = "6.4.2"; src = fetchurl { - url = "https://registry.npmjs.org/acorn/-/acorn-5.7.4.tgz"; - sha512 = "1D++VG7BhrtvQpNbBzovKNc1FLGGEE/oGe7b9xJm/RFHMBeUaUGpluV9RLjZa47YFdPcDAenEYuq9pQPcMdLJg=="; + url = "https://registry.npmjs.org/acorn/-/acorn-6.4.2.tgz"; + sha512 = "XtGIhXwF8YM8bJhGxG5kXgjkEuNGLTkoYqVE+KMR+aspr4KGYmKYg7yUe3KghyQ9yheNwLnjmzh/7+gfDBmHCQ=="; }; }; - "acorn-7.4.1" = { + "acorn-8.8.2" = { name = "acorn"; packageName = "acorn"; - version = "7.4.1"; + version = "8.8.2"; src = fetchurl { - url = "https://registry.npmjs.org/acorn/-/acorn-7.4.1.tgz"; - sha512 = "nQyp0o1/mNdbTO1PO6kHkwSrmgZ0MT/jCCpNiwbUjGoRN4dlBhqJtoQuCnEOKzgTVwg0ZWiCoQy6SxMebQVh8A=="; + url = "https://registry.npmjs.org/acorn/-/acorn-8.8.2.tgz"; + sha512 = "xjIYgE8HBrkpd/sJqOGNspf8uHG+NOHGOw6a/Urj8taM2EXfdNAH2oFcPeIFfsv3+kz/mJrS5VuMqbNLjCa2vw=="; }; }; "acorn-jsx-5.3.2" = { @@ -121,15 +175,6 @@ let sha512 = "JoX0apGbHaUJBNl6yF+p6JAFYZ666/hhCGKN5t9QFjbJQKUU/g8MNbFDbvfrgKXvI1QpZplPOnwIo99lX/AAmA=="; }; }; - "ansi-escapes-4.3.2" = { - name = "ansi-escapes"; - packageName = "ansi-escapes"; - version = "4.3.2"; - src = fetchurl { - url = "https://registry.npmjs.org/ansi-escapes/-/ansi-escapes-4.3.2.tgz"; - sha512 = "gKXj5ALrKWQLsYG9jlTRmR/xKluxHV+Z9QEwNIgCfM1/uwPMCuzVVnh5mwTd+OuBZcwSIMbqssNWRm1lE51QaQ=="; - }; - }; "ansi-gray-0.1.1" = { name = "ansi-gray"; packageName = "ansi-gray"; @@ -148,15 +193,6 @@ let sha512 = "TIGnTpdo+E3+pCyAluZvtED5p5wCqLdezCyhPZzKPcxvFplEt4i+W7OONCKgeZFT3+y5NZZfOOS/Bdcanm1MYA=="; }; }; - "ansi-regex-4.1.1" = { - name = "ansi-regex"; - packageName = "ansi-regex"; - version = "4.1.1"; - src = fetchurl { - url = "https://registry.npmjs.org/ansi-regex/-/ansi-regex-4.1.1.tgz"; - sha512 = "ILlv4k/3f6vfQ4OoP2AGvirOktlQ98ZEL1k9FaQjxa3L1abBgbuTDAdPOpvbGncC0BTVQrl+OM8xZGK6tWXt7g=="; - }; - }; "ansi-regex-5.0.1" = { name = "ansi-regex"; packageName = "ansi-regex"; @@ -175,15 +211,6 @@ let sha512 = "kmCevFghRiWM7HB5zTPULl4r9bVFSWjz62MhqizDGUrq2NWuNMQyuv4tHHoKJHs69M/MF64lEcHdYIocrdWQYA=="; }; }; - "ansi-styles-3.2.1" = { - name = "ansi-styles"; - packageName = "ansi-styles"; - version = "3.2.1"; - src = fetchurl { - url = "https://registry.npmjs.org/ansi-styles/-/ansi-styles-3.2.1.tgz"; - sha512 = "VT0ZI6kZRdTh8YyJw3SMbYm/u+NqfsAxEpWO0Pf9sq8/e94WxxOpPKx9FR1FlyCtOVDNOQ+8ntlqFxiRc+r5qA=="; - }; - }; "ansi-styles-4.3.0" = { name = "ansi-styles"; packageName = "ansi-styles"; @@ -220,13 +247,13 @@ let sha512 = "5teOsQWABXHHBFP9y3skS5P3d/WfWXpv3FUpy+LorMrNYaT9pI4oLMQX7jzQ2KklNpGpWHzdCXTDT2Y3XGlZBw=="; }; }; - "anymatch-3.1.2" = { + "anymatch-3.1.3" = { name = "anymatch"; packageName = "anymatch"; - version = "3.1.2"; + version = "3.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/anymatch/-/anymatch-3.1.2.tgz"; - sha512 = "P43ePfOAIupkguHUycrc4qJ9kz8ZiuOUijaETwX7THt0Y/GNK7v0aa8rY816xWjZ7rJdA5XdMcpVFTKMq+RvWg=="; + url = "https://registry.npmjs.org/anymatch/-/anymatch-3.1.3.tgz"; + sha512 = "KMReFUr0B4t+D+OBkjR3KYqvocp2XaSzO55UcB6mgQMd3KbcE+mWTyvVV7D/zsdEbNnV6acZUutkiHQXvTr1Rw=="; }; }; "append-buffer-1.0.2" = { @@ -256,15 +283,6 @@ let sha512 = "Xg+9RwCg/0p32teKdGMPTPnVXKD0w3DfHnFTficozsAgsvq2XenPJq/MYpzzQ/v8zrOyJn6Ds39VA4JIDwFfqw=="; }; }; - "argparse-1.0.10" = { - name = "argparse"; - packageName = "argparse"; - version = "1.0.10"; - src = fetchurl { - url = "https://registry.npmjs.org/argparse/-/argparse-1.0.10.tgz"; - sha512 = "o5Roy6tNG4SL/FOkCAN6RzjiakZS25RLYFrcMttJqbdd8BWrnA+fGz57iN5Pb06pvBGvl5gQ0B48dJlslXvoTg=="; - }; - }; "argparse-2.0.1" = { name = "argparse"; packageName = "argparse"; @@ -427,15 +445,6 @@ let sha512 = "Q+JC7Whu8HhmTdBph/Tq59IoRtoy6KAm5zzPv00WdujX82lbAL8K7WVjne7vdCsAmbF4AYaDOPyO3k0kl8qIrw=="; }; }; - "astral-regex-1.0.0" = { - name = "astral-regex"; - packageName = "astral-regex"; - version = "1.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/astral-regex/-/astral-regex-1.0.0.tgz"; - sha512 = "+Ryf6g3BKoRc7jfp7ad8tM4TtMiaWvbF/1/sQcZPkkS7ag3D5nMBCe2UfOTONtAkaG0tO0ij3C5Lwmf1EiyjHg=="; - }; - }; "async-done-1.3.2" = { name = "async-done"; packageName = "async-done"; @@ -445,13 +454,13 @@ let sha512 = "uYkTP8dw2og1tu1nmza1n1CMW0qb8gWWlwqMmLb7MhBVs4BXrFziT6HXUd+/RlRA/i4H9AkofYloUbs1fwMqlw=="; }; }; - "async-each-1.0.3" = { + "async-each-1.0.6" = { name = "async-each"; packageName = "async-each"; - version = "1.0.3"; + version = "1.0.6"; src = fetchurl { - url = "https://registry.npmjs.org/async-each/-/async-each-1.0.3.tgz"; - sha512 = "z/WhQ5FPySLdvREByI2vZiTWwCnF0moMJ1hK9YQwDTHKh6I7/uSckMetoRGb5UBZPC1z0jlw+n/XCgjeH7y1AQ=="; + url = "https://registry.npmjs.org/async-each/-/async-each-1.0.6.tgz"; + sha512 = "c646jH1avxr+aVpndVMeAfYw7wAa6idufrlN3LPA4PmKS0QEGp6PIC9nwz0WQkkvBGAMEki3pFdtxaF39J9vvg=="; }; }; "async-settle-1.0.0" = { @@ -481,13 +490,13 @@ let sha512 = "Wm6ukoaOGJi/73p/cl2GvLjTI5JM1k/O14isD73YML8StrH/7/lRFgmg8nICZgD3bZZvjwCGxtMOD3wWNAu8cg=="; }; }; - "auto-launch-5.0.5" = { + "auto-launch-5.0.6" = { name = "auto-launch"; packageName = "auto-launch"; - version = "5.0.5"; + version = "5.0.6"; src = fetchurl { - url = "https://registry.npmjs.org/auto-launch/-/auto-launch-5.0.5.tgz"; - sha512 = "ppdF4mihhYzMYLuCcx9H/c5TUOCev8uM7en53zWVQhyYAJrurd2bFZx3qQVeJKF2jrc7rsPRNN5cD+i23l6PdA=="; + url = "https://registry.npmjs.org/auto-launch/-/auto-launch-5.0.6.tgz"; + sha512 = "OgxiAm4q9EBf9EeXdPBiVNENaWE3jUZofwrhAkWjHDYGezu1k3FRZHU8V2FBxGuSJOHzKmTJEd0G7L7/0xDGFA=="; }; }; "aws-sign2-0.7.0" = { @@ -499,13 +508,13 @@ let sha512 = "08kcGqnYf/YmjoRhfxyu+CLxBjUtHLXLXX/vUfx9l2LYzG3c1m61nrpyFUZI6zeS+Li/wWMMidD9KgrqtGq3mA=="; }; }; - "aws4-1.11.0" = { + "aws4-1.12.0" = { name = "aws4"; packageName = "aws4"; - version = "1.11.0"; + version = "1.12.0"; src = fetchurl { - url = "https://registry.npmjs.org/aws4/-/aws4-1.11.0.tgz"; - sha512 = "xh1Rl34h6Fi1DC2WWKfxUTVqRsNnr6LsKz2+hfwDxQJWmrx8+c7ylaqBMcHfl1U1r2dsifOvKX3LQuLNZ+XSvA=="; + url = "https://registry.npmjs.org/aws4/-/aws4-1.12.0.tgz"; + sha512 = "NmWvPnx0F1SfrQbYwOi7OeaNGokp9XhzNioJ/CSBs8Qa4vxug81mhJEAVZwxXuBmYB5KDRfMq/F3RR0BIU7sWg=="; }; }; "bach-1.2.0" = { @@ -607,6 +616,15 @@ let sha512 = "iCuPHDFgrHX7H2vEI/5xpz07zSHB00TpugqhmYtVmMO6518mCuRMoOYFldEBl0g187ufozdaHgWKcYFb61qGiA=="; }; }; + "brace-expansion-2.0.1" = { + name = "brace-expansion"; + packageName = "brace-expansion"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/brace-expansion/-/brace-expansion-2.0.1.tgz"; + sha512 = "XnAIvQ8eM+kC6aULx6wuQiwVsnzsi9d3WxzV3FpWTGA19F621kwdbsAcFKXgKUHZWsy+mY6iL1sHTxWEFCytDA=="; + }; + }; "braces-1.8.5" = { name = "braces"; packageName = "braces"; @@ -679,13 +697,13 @@ let sha512 = "VO9Ht/+p3SN7SKWqcrgEzjGbRSJYTx+Q1pTQC0wrWqHx0vpJraQ6GtHx8tvcg1rlK1byhU5gccxgOgj7B0TDkQ=="; }; }; - "buffer-equal-1.0.0" = { + "buffer-equal-1.0.1" = { name = "buffer-equal"; packageName = "buffer-equal"; - version = "1.0.0"; + version = "1.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/buffer-equal/-/buffer-equal-1.0.0.tgz"; - sha512 = "tcBWO2Dl4e7Asr9hTGcpVrCe+F7DubpmqWCTbj4FHLmjqO2hIaC383acQubWtRJhdceqs5uBHs6Es+Sk//RKiQ=="; + url = "https://registry.npmjs.org/buffer-equal/-/buffer-equal-1.0.1.tgz"; + sha512 = "QoV3ptgEaQpvVwbXdSO39iqPQTCxSF7A5U99AxbHYqUdCizL/lH2Z0A2y6nbZucxMEOtNyZfG2s6gsVugGpKkg=="; }; }; "buffer-fill-1.0.0" = { @@ -715,6 +733,15 @@ let sha512 = "9q/rDEGSb/Qsvv2qvzIzdluL5k7AaJOTrw23z9reQthrbF7is4CtlT0DXyO1oei2DCp4uojjzQ7igaSHp1kAEQ=="; }; }; + "bufferutil-4.0.7" = { + name = "bufferutil"; + packageName = "bufferutil"; + version = "4.0.7"; + src = fetchurl { + url = "https://registry.npmjs.org/bufferutil/-/bufferutil-4.0.7.tgz"; + sha512 = "kukuqc39WOHtdxtw4UScxF/WVnMFVSQVKhtx3AjZJzhd0RGZZldcrfSEbVsWWe6KNH253574cq5F+wpv0G9pJw=="; + }; + }; "cache-base-1.0.1" = { name = "cache-base"; packageName = "cache-base"; @@ -769,13 +796,13 @@ let sha512 = "Gmy6FhYlCY7uOElZUSbxo2UCDH8owEk996gkbrpsgGtrJLM3J7jGxl9Ic7Qwwj4ivOE5AWZWRMecDdF7hqGjFA=="; }; }; - "capture-stack-trace-1.0.1" = { + "capture-stack-trace-1.0.2" = { name = "capture-stack-trace"; packageName = "capture-stack-trace"; - version = "1.0.1"; + version = "1.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/capture-stack-trace/-/capture-stack-trace-1.0.1.tgz"; - sha512 = "mYQLZnx5Qt1JgB1WEiMCf2647plpGeQ2NMR/5L0HNZzGQo4fuSPnK+wjfPnKZV0aiJDgzmWqqkV/g7JD+DW0qw=="; + url = "https://registry.npmjs.org/capture-stack-trace/-/capture-stack-trace-1.0.2.tgz"; + sha512 = "X/WM2UQs6VMHUtjUDnZTRI+i1crWteJySFzr9UpGoQa4WQffXVTTXuekjl7TjZRlcF2XfjgITT0HxZ9RnxeT0w=="; }; }; "caseless-0.12.0" = { @@ -796,13 +823,13 @@ let sha512 = "Cg8/ZSBEa8ZVY9HspcGUYaK63d/bN7rqS3CYCzEGUxuYv6UlmcjzDUz2fCFFHyTvUW5Pk0I+3hkA3iXlIj6guA=="; }; }; - "chai-4.3.6" = { + "chai-4.3.7" = { name = "chai"; packageName = "chai"; - version = "4.3.6"; + version = "4.3.7"; src = fetchurl { - url = "https://registry.npmjs.org/chai/-/chai-4.3.6.tgz"; - sha512 = "bbcp3YfHCUzMOvKqsztczerVgBKSsEijCySNlHHbX3VG1nskvqjz5Rfso1gGwD6w6oOV3eI60pKuMOV5MV7p3Q=="; + url = "https://registry.npmjs.org/chai/-/chai-4.3.7.tgz"; + sha512 = "HLnAzZ2iupm25PlN0xFreAlBA5zaBSv3og0DdeGA4Ar6h6rJ3A0rolRUKJhSF2V10GZKDgWF/VmAEsNWjCRB+A=="; }; }; "chai-as-promised-7.1.1" = { @@ -832,15 +859,6 @@ let sha512 = "U3lRVLMSlsCfjqYPbLyVv11M9CPW4I728d6TCKMAOJueEeB9/8o+eSsMnxPJD+Q+K909sdESg7C+tIkoH6on1A=="; }; }; - "chalk-2.4.2" = { - name = "chalk"; - packageName = "chalk"; - version = "2.4.2"; - src = fetchurl { - url = "https://registry.npmjs.org/chalk/-/chalk-2.4.2.tgz"; - sha512 = "Mti+f9lpJNcwF4tWV8/OrTTtF1gZi+f8FqlyAdouralcFWFQWF2+NgCHShjkCb+IFBLq9buZwE1xckQU4peSuQ=="; - }; - }; "chalk-4.1.2" = { name = "chalk"; packageName = "chalk"; @@ -850,15 +868,6 @@ let sha512 = "oKnbhFyRIXpUuez8iBMmyEa4nbj4IOQyuhc/wy9kY7/WVPcwIO9VA668Pu8RkO7+0G76SLROeyw9CpQ061i4mA=="; }; }; - "chardet-0.7.0" = { - name = "chardet"; - packageName = "chardet"; - version = "0.7.0"; - src = fetchurl { - url = "https://registry.npmjs.org/chardet/-/chardet-0.7.0.tgz"; - sha512 = "mT8iDcrh03qDGRRmoA2hmBJnxpllMR+0/0qlzjqZES6NdiWDcZkCNAk4rPFZ9Q85r27unkiNNg8ZOiwZXBHwcA=="; - }; - }; "check-error-1.0.2" = { name = "check-error"; packageName = "check-error"; @@ -886,13 +895,13 @@ let sha512 = "ZmZUazfOzf0Nve7duiCKD23PFSCs4JPoYyccjUFF3aQkQadqBhfzhjkwBH2mNOG9cTBwhamM37EIsIkZw3nRgg=="; }; }; - "chokidar-3.5.1" = { + "chokidar-3.5.3" = { name = "chokidar"; packageName = "chokidar"; - version = "3.5.1"; + version = "3.5.3"; src = fetchurl { - url = "https://registry.npmjs.org/chokidar/-/chokidar-3.5.1.tgz"; - sha512 = "9+s+Od+W0VJJzawDma/gvBNQqkTiqYTWLuZoyAsivsI4AaWTCzHG06/TMjsf1cYe9Cb97UCEhjz7HvnPk2p/tw=="; + url = "https://registry.npmjs.org/chokidar/-/chokidar-3.5.3.tgz"; + sha512 = "Dr3sfKRP6oTcjf2JmUmFJfeVMvXBdegxB0iVQ5eb2V10uFJUCAS8OByZdVAyVb8xXNz3GjjTgj9kLWsZTqE6kw=="; }; }; "class-utils-0.3.6" = { @@ -904,31 +913,13 @@ let sha512 = "qOhPa/Fj7s6TY8H8esGu5QNpMMQxz79h+urzrNYN6mn+9BnxlDGf5QZ+XeCDsxSjPqsSR56XOZOJmpeurnLMeg=="; }; }; - "cli-cursor-3.1.0" = { - name = "cli-cursor"; - packageName = "cli-cursor"; - version = "3.1.0"; - src = fetchurl { - url = "https://registry.npmjs.org/cli-cursor/-/cli-cursor-3.1.0.tgz"; - sha512 = "I/zHAwsKf9FqGoXM4WWRACob9+SNukZTd94DWF57E4toouRulbCxcUh6RKUEOQlYTHJnzkPMySvPNaaSLNfLZw=="; - }; - }; - "cli-width-3.0.0" = { - name = "cli-width"; - packageName = "cli-width"; - version = "3.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/cli-width/-/cli-width-3.0.0.tgz"; - sha512 = "FxqpkPPwu1HjuN93Omfm4h8uIanXofW0RxVEW3k5RKx+mJJYSthzNhp32Kzxxy3YAEZ/Dc/EWN1vZRY0+kOhbw=="; - }; - }; "cliui-3.2.0" = { name = "cliui"; packageName = "cliui"; version = "3.2.0"; src = fetchurl { url = "https://registry.npmjs.org/cliui/-/cliui-3.2.0.tgz"; - sha1 = "120601537a916d29940f934da3b48d585a39213d"; + sha512 = "0yayqDxWQbqk3ojkYqUKqaAQ6AfNKeKWRNA8kR0WXzAsdHpP4BIaOmMAG87JGuO6qcobyW4GjxHd9PmhEd+T9w=="; }; }; "cliui-7.0.4" = { @@ -940,13 +931,22 @@ let sha512 = "OcRE68cOsVMXp1Yvonl/fzkQOyjLSu/8bhPDfQt0e0/Eb283TKP20Fs2MqoPsr9SwA595rRCA+QMzYc9nBP+JQ=="; }; }; + "cliui-8.0.1" = { + name = "cliui"; + packageName = "cliui"; + version = "8.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/cliui/-/cliui-8.0.1.tgz"; + sha512 = "BSeNnyus75C4//NQ9gQt1/csTXyo/8Sb+afLAkzAptFuMsod9HFokGNudZpi/oQV73hnVK+sR+5PVRMd+Dr7YQ=="; + }; + }; "clone-2.1.2" = { name = "clone"; packageName = "clone"; version = "2.1.2"; src = fetchurl { url = "https://registry.npmjs.org/clone/-/clone-2.1.2.tgz"; - sha1 = "1b7f4b9f591f1e8f83670401600345a02887435f"; + sha512 = "3Pe/CF1Nn94hyhIYpjtiLhdCoEoz0DqQ+988E9gmeEdQZlojxnOb74wctFyuwWQHzqyf9X7C7MG8juUpqBJT8w=="; }; }; "clone-buffer-1.0.0" = { @@ -955,7 +955,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/clone-buffer/-/clone-buffer-1.0.0.tgz"; - sha1 = "e3e25b207ac4e701af721e2cb5a16792cac3dc58"; + sha512 = "KLLTJWrvwIP+OPfMn0x2PheDEP20RPUcGXj/ERegTgdmPEZylALQldygiqrPPu8P45uNuPs7ckmReLY6v/iA5g=="; }; }; "clone-stats-1.0.0" = { @@ -964,7 +964,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/clone-stats/-/clone-stats-1.0.0.tgz"; - sha1 = "b3782dff8bb5474e18b9b6bf0fdfe782f8777680"; + sha512 = "au6ydSpg6nsrigcZ4m8Bc9hxjeW+GJ8xh5G3BJCMt4WXe1H10UNaVOamqQTmrx1kjVuxAHIQSNU6hY4Nsn9/ag=="; }; }; "cloneable-readable-1.1.3" = { @@ -982,7 +982,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/code-point-at/-/code-point-at-1.1.0.tgz"; - sha1 = "0d070b4d043a5bea33a2f1a40e2edb3d9a4ccf77"; + sha512 = "RpAVKQA5T63xEj6/giIbUEtZwJ4UFIc3ZtvEkiaUERylqe8xb5IvqcgOurZLahv93CLKfxcw5YI+DZcUBRyLXA=="; }; }; "collection-map-1.0.0" = { @@ -991,7 +991,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/collection-map/-/collection-map-1.0.0.tgz"; - sha1 = "aea0f06f8d26c780c2b75494385544b2255af18c"; + sha512 = "5D2XXSpkOnleOI21TG7p3T0bGAsZ/XknZpKBmGYyluO8pw4zA3K8ZlrBIbC4FXg3m6z/RNFiUFfT2sQK01+UHA=="; }; }; "collection-visit-1.0.0" = { @@ -1000,16 +1000,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/collection-visit/-/collection-visit-1.0.0.tgz"; - sha1 = "4bc0373c164bc3291b4d368c829cf1a80a59dca0"; - }; - }; - "color-convert-1.9.3" = { - name = "color-convert"; - packageName = "color-convert"; - version = "1.9.3"; - src = fetchurl { - url = "https://registry.npmjs.org/color-convert/-/color-convert-1.9.3.tgz"; - sha512 = "QfAUtd+vFdAtFQcC8CCyYt1fYWxSqAiK2cSD6zDB8N3cpsEBAvRxp9zOGg6G/SHHJYAT88/az/IuDGALsNVbGg=="; + sha512 = "lNkKvzEeMBBjUGHZ+q6z9pSJla0KWAQPvtzhEV9+iGyQYG+pBpl7xKDhxoNSOZH2hhv0v5k0y2yAM4o4SjoSkw=="; }; }; "color-convert-2.0.1" = { @@ -1021,15 +1012,6 @@ let sha512 = "RRECPsj7iu/xb5oKYcsFHSppFNnsj/52OVTRKb4zP5onXwVF3zVmmToNcOfGC+CRDpfK/U584fMg38ZHCaElKQ=="; }; }; - "color-name-1.1.3" = { - name = "color-name"; - packageName = "color-name"; - version = "1.1.3"; - src = fetchurl { - url = "https://registry.npmjs.org/color-name/-/color-name-1.1.3.tgz"; - sha1 = "a7d0558bd89c42f795dd42328f740831ca53bc25"; - }; - }; "color-name-1.1.4" = { name = "color-name"; packageName = "color-name"; @@ -1081,7 +1063,7 @@ let version = "0.0.1"; src = fetchurl { url = "https://registry.npmjs.org/concat-map/-/concat-map-0.0.1.tgz"; - sha1 = "d8a96bd77fd68df7793a73036a3ba0d5405d477b"; + sha512 = "/Srv4dswyQNBfohGpz9o6Yb3Gz3SrUDqBH5rTuhGR7ahtlbYKnVxw2bCFMRljaA7EXHaXZ8wsHdodFvbkhKmqg=="; }; }; "concat-stream-1.6.2" = { @@ -1102,13 +1084,13 @@ let sha512 = "qj+f8APARXHrM0hraqXYb2/bOVSV4PvJQlNZ/DVj0QrmNM2q2euizkeuVckQ57J+W0mRH6Hvi+k50M4Jul2VRQ=="; }; }; - "convert-source-map-1.8.0" = { + "convert-source-map-1.9.0" = { name = "convert-source-map"; packageName = "convert-source-map"; - version = "1.8.0"; + version = "1.9.0"; src = fetchurl { - url = "https://registry.npmjs.org/convert-source-map/-/convert-source-map-1.8.0.tgz"; - sha512 = "+OQdjP49zViI/6i7nIJpA8rAl4sV/JdPfU9nZs3VqOwGIgizICvuN2ru6fMd+4llL0tar18UYJXfZ/TWtmhUjA=="; + url = "https://registry.npmjs.org/convert-source-map/-/convert-source-map-1.9.0.tgz"; + sha512 = "ASFBup0Mz1uyiIjANan1jzLQami9z1PoYSZCiiYW2FczPbenXc45FZdBZLzOT+r6+iciuEModtmCti+hjaAk0A=="; }; }; "copy-descriptor-0.1.1" = { @@ -1117,7 +1099,7 @@ let version = "0.1.1"; src = fetchurl { url = "https://registry.npmjs.org/copy-descriptor/-/copy-descriptor-0.1.1.tgz"; - sha1 = "676f6eb3c39997c2ee1ac3a924fd6124748f578d"; + sha512 = "XgZ0pFcakEUlbwQEVNg3+QAis1FyTL3Qel9FYy8pSkQqoG3PNoT0bOCQtOXcOkur21r2Eq2kI+IE+gsmAEVlYw=="; }; }; "copy-props-2.0.5" = { @@ -1135,7 +1117,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/core-util-is/-/core-util-is-1.0.2.tgz"; - sha1 = "b5fd54220aa2bc5ab57aab7140c940754503c1a7"; + sha512 = "3lqz5YjWTYnW6dlDa5TLaTCcShfar1e40rmcJVwCBJC6mWlFuj0eCHIElmG1g5kyuJ/GD+8Wn4FFCcz4gJPfaQ=="; }; }; "core-util-is-1.0.3" = { @@ -1153,25 +1135,25 @@ let version = "3.0.2"; src = fetchurl { url = "https://registry.npmjs.org/create-error-class/-/create-error-class-3.0.2.tgz"; - sha1 = "06be7abef947a3f14a30fd610671d401bca8b7b6"; + sha512 = "gYTKKexFO3kh200H1Nit76sRwRtOY32vQd3jpAQKpLtZqyNsSQNfI4N7o3eP2wUjV35pTWKRYqFUDBvUha/Pkw=="; }; }; - "cross-spawn-6.0.5" = { + "cross-spawn-7.0.3" = { name = "cross-spawn"; packageName = "cross-spawn"; - version = "6.0.5"; + version = "7.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/cross-spawn/-/cross-spawn-6.0.5.tgz"; - sha512 = "eTVLrBSt7fjbDygz805pMnstIs2VTBNkRm0qxZd+M7A5XDdxVRWO5MxGBXZhjY4cqLYLdtrGqRf8mBPmzwSpWQ=="; + url = "https://registry.npmjs.org/cross-spawn/-/cross-spawn-7.0.3.tgz"; + sha512 = "iRDPJKUPVEND7dHPO8rkbOnPpyDygcDFtWjpeWNCgy8WP2rXcxXL8TskReQl6OrB2G7+UJrags1q15Fudc7G6w=="; }; }; - "css-2.2.4" = { + "css-3.0.0" = { name = "css"; packageName = "css"; - version = "2.2.4"; + version = "3.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/css/-/css-2.2.4.tgz"; - sha512 = "oUnjmWpy0niI3x/mPL8dVEI1l7MnG3+HHyRPHf+YFSbK+svOhXpmSOcDURUh2aOCgl2grzrOPt1nHLuCVFULLw=="; + url = "https://registry.npmjs.org/css/-/css-3.0.0.tgz"; + sha512 = "DG9pFfwOrzc+hawpmqX/dHYHJG+Bsdb0klhyi1sDneOgGOXy9wQIC8hzyVp1e4NRYDBdxcylvywPkkXCHAzTyQ=="; }; }; "d-1.0.1" = { @@ -1189,7 +1171,7 @@ let version = "1.14.1"; src = fetchurl { url = "https://registry.npmjs.org/dashdash/-/dashdash-1.14.1.tgz"; - sha1 = "853cfa0f7cbe2fed5de20326b8dd581035f6e2f0"; + sha512 = "jRFi8UDGo6j+odZiEpjazZaWqEal3w/basFjQHQEwVtZJGDpxbH1MeYluwCS8Xq5wmLJooDlMgvVarmWfGM44g=="; }; }; "debounce-1.2.1" = { @@ -1219,15 +1201,6 @@ let sha512 = "CFjzYYAi4ThfiQvizrFQevTTXHtnCqWfe7x1AhgEscTz6ZbLbfoLRLPugTQyBth6f8ZERVUSyWHFD/7Wu4t1XQ=="; }; }; - "debug-4.3.1" = { - name = "debug"; - packageName = "debug"; - version = "4.3.1"; - src = fetchurl { - url = "https://registry.npmjs.org/debug/-/debug-4.3.1.tgz"; - sha512 = "doEwdvm4PCeK4K3RQN2ZC2BYUBaxwLARCqZmMjtF8a51J2Rb0xpVloFRnCODwqjpwnAoao4pelN8l3RJdv3gRQ=="; - }; - }; "debug-4.3.4" = { name = "debug"; packageName = "debug"; @@ -1252,7 +1225,7 @@ let version = "1.2.0"; src = fetchurl { url = "https://registry.npmjs.org/decamelize/-/decamelize-1.2.0.tgz"; - sha1 = "f6534d15148269b20352e7bee26f501f9a191290"; + sha512 = "z2S+W9X73hAUUki+N+9Za2lBlun89zigOyGrsax+KUQ6wKW4ZoWpEYBkGhQjwAjjDCkWxhY0VKEhk8wzY7F5cA=="; }; }; "decamelize-4.0.0" = { @@ -1264,13 +1237,13 @@ let sha512 = "9iE1PgSik9HeIIw2JO94IidnE3eBoQrFJ3w7sFuzSX4DpmZ3v5sZpUiV5Swcf6mQEF+Y0ru8Neo+p+nyh2J+hQ=="; }; }; - "decode-uri-component-0.2.0" = { + "decode-uri-component-0.2.2" = { name = "decode-uri-component"; packageName = "decode-uri-component"; - version = "0.2.0"; + version = "0.2.2"; src = fetchurl { - url = "https://registry.npmjs.org/decode-uri-component/-/decode-uri-component-0.2.0.tgz"; - sha1 = "eb3913333458775cb84cd1a1fae062106bb87545"; + url = "https://registry.npmjs.org/decode-uri-component/-/decode-uri-component-0.2.2.tgz"; + sha512 = "FqUYQ+8o158GyGTrMFJms9qh3CqTKvAqgqsTnkLI8sKu0028orqBhxNMFkFen0zGyg6epACD32pjVk58ngIErQ=="; }; }; "decompress-4.2.1" = { @@ -1315,7 +1288,7 @@ let version = "4.0.1"; src = fetchurl { url = "https://registry.npmjs.org/decompress-unzip/-/decompress-unzip-4.0.1.tgz"; - sha1 = "deaaccdfd14aeaf85578f733ae8210f9b4848f69"; + sha512 = "1fqeluvxgnn86MOh66u8FjbtJpAFv5wgCT9Iw8rcBqQcCo5tO8eiJw7NNTrvt9n4CRBVq7CstiS922oPgyGLrw=="; }; }; "decompress-zip-0.3.3" = { @@ -1327,13 +1300,13 @@ let sha512 = "/fy1L4s+4jujqj3kNptWjilFw3E6De8U6XUFvqmh4npN3Vsypm3oT2V0bXcmbBWS+5j5tr4okYaFrOmyZkszEg=="; }; }; - "deep-eql-3.0.1" = { + "deep-eql-4.1.3" = { name = "deep-eql"; packageName = "deep-eql"; - version = "3.0.1"; + version = "4.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/deep-eql/-/deep-eql-3.0.1.tgz"; - sha512 = "+QeIQyN5ZuO+3Uk5DYh6/1eKO0m0YmJFGNmFHGACpf1ClL1nmlV/p4gNgbl2pJGxgXb4faqo6UE+M5ACEMyVcw=="; + url = "https://registry.npmjs.org/deep-eql/-/deep-eql-4.1.3.tgz"; + sha512 = "WaEtAOpRA1MQ0eohqZjpGD8zdI0Ovsm8mmFhaDN8dvDZzyoUMcYDnf5Y6iu7HTXxf8JDS23qWa4a+hKCDyOPzw=="; }; }; "deep-is-0.1.4" = { @@ -1360,16 +1333,16 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/default-resolution/-/default-resolution-2.0.0.tgz"; - sha1 = "bcb82baa72ad79b426a76732f1a81ad6df26d684"; + sha512 = "2xaP6GiwVwOEbXCGoJ4ufgC76m8cj805jrghScewJC2ZDsb9U0b4BIrba+xt/Uytyd0HvQ6+WymSRTfnYj59GQ=="; }; }; - "define-properties-1.1.4" = { + "define-properties-1.2.0" = { name = "define-properties"; packageName = "define-properties"; - version = "1.1.4"; + version = "1.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/define-properties/-/define-properties-1.1.4.tgz"; - sha512 = "uckOqKcfaVvtBdsVkdPv3XjveQJsNQqmhXgRi8uhvWWuPYZCNlzT8qAyblUgNoXdHdjMTzAqeGjAoli8f+bzPA=="; + url = "https://registry.npmjs.org/define-properties/-/define-properties-1.2.0.tgz"; + sha512 = "xvqAVKGfT1+UAvPwKTVw/njhdQ8ZhXK4lI0bCIuCMrp2up9nPnaDftrLtmpTazqd1o+UY4zgzU+avtMbDP+ldA=="; }; }; "define-property-0.2.5" = { @@ -1378,7 +1351,7 @@ let version = "0.2.5"; src = fetchurl { url = "https://registry.npmjs.org/define-property/-/define-property-0.2.5.tgz"; - sha1 = "c35b1ef918ec3c990f9a5bc57be04aacec5c8116"; + sha512 = "Rr7ADjQZenceVOAKop6ALkkRAmH1A4Gx9hV/7ZujPUN2rkATqFO0JZLZInbAjpZYoJ1gUx8MRMQVkYemcbMSTA=="; }; }; "define-property-1.0.0" = { @@ -1387,7 +1360,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/define-property/-/define-property-1.0.0.tgz"; - sha1 = "769ebaaf3f4a63aad3af9e8d304c9bbe79bfb0e6"; + sha512 = "cZTYKFWspt9jZsMscWo8sc/5lbPC9Q0N5nBLgb+Yd915iL3udB1uFgS3B8YCx66UVHq018DAVFoee7x+gxggeA=="; }; }; "define-property-2.0.2" = { @@ -1405,7 +1378,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/delayed-stream/-/delayed-stream-1.0.0.tgz"; - sha1 = "df3ae199acadfb7d440aaae0b29e2272b24ec619"; + sha512 = "ZySD7Nf91aLB0RxL4KGrKHBXl7Eds1DAmEdcoVawXnLD7SDhpNgtuII2aAkg7a7QS41jxPSZ17p4VdGnMHk3MQ=="; }; }; "detect-file-1.0.0" = { @@ -1414,7 +1387,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/detect-file/-/detect-file-1.0.0.tgz"; - sha1 = "f0d66d03672a825cb1b73bdb3fe62310c8e552b7"; + sha512 = "DtCOLG98P007x7wiiOmfI0fi3eIKyWiLTGJ2MDnVi/E04lWGbf+JzrRHMm0rgIIZJGtHpKpbVgLWHrv8xXpc3Q=="; }; }; "detect-newline-2.1.0" = { @@ -1423,7 +1396,7 @@ let version = "2.1.0"; src = fetchurl { url = "https://registry.npmjs.org/detect-newline/-/detect-newline-2.1.0.tgz"; - sha1 = "f41f1c10be4b00e87b5f13da680759f2c5bfd3e2"; + sha512 = "CwffZFvlJffUg9zZA0uqrjQayUTC8ob94pnr5sFwaVv3IOmkfUHcWH+jXaQK3askE51Cqe8/9Ql/0uXNwqZ8Zg=="; }; }; "diff-5.0.0" = { @@ -1450,16 +1423,16 @@ let version = "5.0.3"; src = fetchurl { url = "https://registry.npmjs.org/download/-/download-5.0.3.tgz"; - sha1 = "63537f977f99266a30eb8a2a2fbd1f20b8000f7a"; + sha512 = "rE0V29BV5FyylK3Uw5hmP90TBuwGHAqPYfaRHW/VHsKe9Xqi7RACVg0k0FokeE+MTWr9mtUy75GyszRACiD3Ow=="; }; }; - "duplexer3-0.1.4" = { + "duplexer3-0.1.5" = { name = "duplexer3"; packageName = "duplexer3"; - version = "0.1.4"; + version = "0.1.5"; src = fetchurl { - url = "https://registry.npmjs.org/duplexer3/-/duplexer3-0.1.4.tgz"; - sha1 = "ee01dd1cac0ed3cbc7fdbea37dc0a8f1ce002ce2"; + url = "https://registry.npmjs.org/duplexer3/-/duplexer3-0.1.5.tgz"; + sha512 = "1A8za6ws41LQgv9HrE/66jyC5yuSjQ3L/KOpFtoBilsAK2iA2wuS5rTt1OCzIvtS2V7nVmedsUU+DGRcjBmOYA=="; }; }; "duplexify-3.7.1" = { @@ -1486,16 +1459,7 @@ let version = "0.1.2"; src = fetchurl { url = "https://registry.npmjs.org/ecc-jsbn/-/ecc-jsbn-0.1.2.tgz"; - sha1 = "3a83a904e54353287874c564b7549386849a98c9"; - }; - }; - "emoji-regex-7.0.3" = { - name = "emoji-regex"; - packageName = "emoji-regex"; - version = "7.0.3"; - src = fetchurl { - url = "https://registry.npmjs.org/emoji-regex/-/emoji-regex-7.0.3.tgz"; - sha512 = "CwBLREIQ7LvYFB0WyRvwhq5N5qPhc6PMjD6bYggFlI5YyDgl+0vxq5VHbMOFqLg7hfWzmu8T5Z1QofhmTIhItA=="; + sha512 = "eh9O+hwRHNbG4BLTjEl3nw044CkGm5X6LoaCf7LPp7UU8Qrt47JYNi6nPX8xjW97TKGKm1ouctg0QSpZe9qrnw=="; }; }; "emoji-regex-8.0.0" = { @@ -1525,13 +1489,13 @@ let sha512 = "7dFHNmqeFSEt2ZBsCriorKnn3Z2pj+fd9kmI6QoWw4//DL+icEBfc0U7qJCisqrTsKTjw4fNFy2pW9OqStD84g=="; }; }; - "es5-ext-0.10.61" = { + "es5-ext-0.10.62" = { name = "es5-ext"; packageName = "es5-ext"; - version = "0.10.61"; + version = "0.10.62"; src = fetchurl { - url = "https://registry.npmjs.org/es5-ext/-/es5-ext-0.10.61.tgz"; - sha512 = "yFhIqQAzu2Ca2I4SE2Au3rxVfmohU9Y7wqGR+s7+H7krk26NXhIRAZDgqd6xqjCEFUomDEA3/Bo/7fKmIkW1kA=="; + url = "https://registry.npmjs.org/es5-ext/-/es5-ext-0.10.62.tgz"; + sha512 = "BHLqn0klhEpnOKSrzn/Xsz2UIW8j+cGmo9JLzr8BiUapV8hPL9+FliFqjwr9ngW7jWdnxv6eO+/LqyhJVqgrjA=="; }; }; "es6-iterator-2.0.3" = { @@ -1540,7 +1504,7 @@ let version = "2.0.3"; src = fetchurl { url = "https://registry.npmjs.org/es6-iterator/-/es6-iterator-2.0.3.tgz"; - sha1 = "a7de889141a05a94b0854403b2d0a0fbfa98f3b7"; + sha512 = "zw4SRzoUkd+cl+ZoE15A9o1oQd920Bb0iOJMQkQhl3jNc03YqVjAhG7scf9C5KWRU/R13Orf588uCC6525o02g=="; }; }; "es6-symbol-3.1.3" = { @@ -1576,7 +1540,7 @@ let version = "1.0.5"; src = fetchurl { url = "https://registry.npmjs.org/escape-string-regexp/-/escape-string-regexp-1.0.5.tgz"; - sha1 = "1b61c0562190a8dff6ae3bb2cf0200ca130b86d4"; + sha512 = "vbRorB5FUQWvla16U8R/qgaFIya2qGzwDrNmCZuYKrbdSUMG6I1ZCGQRefkRVhuOkIGVne7BQ35DSfo1qvJqFg=="; }; }; "escape-string-regexp-4.0.0" = { @@ -1588,67 +1552,49 @@ let sha512 = "TtpcNJ3XAzx3Gq8sWRzJaVajRs0uVxA2YAkdb1jm2YkPz4G6egUFAyA3n5vtEIZefPk5Wa4UXbKuS5fKkJWdgA=="; }; }; - "eslint-6.8.0" = { + "eslint-8.42.0" = { name = "eslint"; packageName = "eslint"; - version = "6.8.0"; + version = "8.42.0"; src = fetchurl { - url = "https://registry.npmjs.org/eslint/-/eslint-6.8.0.tgz"; - sha512 = "K+Iayyo2LtyYhDSYwz5D5QdWw0hCacNzyq1Y821Xna2xSJj7cijoLLYmLxTQgcgZ9mC61nryMy9S7GRbYpI5Ig=="; + url = "https://registry.npmjs.org/eslint/-/eslint-8.42.0.tgz"; + sha512 = "ulg9Ms6E1WPf67PHaEY4/6E2tEn5/f7FXGzr3t9cBMugOmf1INYvuUwwh1aXQN4MfJ6a5K2iNwP3w4AColvI9A=="; }; }; - "eslint-scope-5.1.1" = { + "eslint-scope-7.2.0" = { name = "eslint-scope"; packageName = "eslint-scope"; - version = "5.1.1"; - src = fetchurl { - url = "https://registry.npmjs.org/eslint-scope/-/eslint-scope-5.1.1.tgz"; - sha512 = "2NxwbF/hZ0KpepYN0cNbo+FN6XoK7GaHlQhgx/hIZl6Va0bF45RQOOwhLIy8lQDbuCiadSLCBnH2CFYquit5bw=="; - }; - }; - "eslint-utils-1.4.3" = { - name = "eslint-utils"; - packageName = "eslint-utils"; - version = "1.4.3"; + version = "7.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/eslint-utils/-/eslint-utils-1.4.3.tgz"; - sha512 = "fbBN5W2xdY45KulGXmLHZ3c3FHfVYmKg0IrAKGOkT/464PQsx2UeIzfz1RmEci+KLm1bBaAzZAh8+/E+XAeZ8Q=="; + url = "https://registry.npmjs.org/eslint-scope/-/eslint-scope-7.2.0.tgz"; + sha512 = "DYj5deGlHBfMt15J7rdtyKNq/Nqlv5KfU4iodrQ019XESsRnwXH9KAE0y3cwtUHDo2ob7CypAnCqefh6vioWRw=="; }; }; - "eslint-visitor-keys-1.3.0" = { + "eslint-visitor-keys-3.4.1" = { name = "eslint-visitor-keys"; packageName = "eslint-visitor-keys"; - version = "1.3.0"; + version = "3.4.1"; src = fetchurl { - url = "https://registry.npmjs.org/eslint-visitor-keys/-/eslint-visitor-keys-1.3.0.tgz"; - sha512 = "6J72N8UNa462wa/KFODt/PJ3IU60SDpC3QXC1Hjc1BXXpfL2C9R5+AU7jhe0F6GREqVMh4Juu+NY7xn+6dipUQ=="; + url = "https://registry.npmjs.org/eslint-visitor-keys/-/eslint-visitor-keys-3.4.1.tgz"; + sha512 = "pZnmmLwYzf+kWaM/Qgrvpen51upAktaaiI01nsJD/Yr3lMOdNtq0cxkrrg16w64VtisN6okbs7Q8AfGqj4c9fA=="; }; }; - "espree-6.2.1" = { + "espree-9.5.2" = { name = "espree"; packageName = "espree"; - version = "6.2.1"; + version = "9.5.2"; src = fetchurl { - url = "https://registry.npmjs.org/espree/-/espree-6.2.1.tgz"; - sha512 = "ysCxRQY3WaXJz9tdbWOwuWr5Y/XrPTGX9Kiz3yoUXwW0VZ4w30HTkQLaGx/+ttFjF8i+ACbArnB4ce68a9m5hw=="; + url = "https://registry.npmjs.org/espree/-/espree-9.5.2.tgz"; + sha512 = "7OASN1Wma5fum5SrNhFMAMJxOUAbhyfQ8dQ//PJaJbNw0URTPWqIghHWt1MmAANKhHZIYOHruW4Kw4ruUWOdGw=="; }; }; - "esprima-4.0.1" = { - name = "esprima"; - packageName = "esprima"; - version = "4.0.1"; - src = fetchurl { - url = "https://registry.npmjs.org/esprima/-/esprima-4.0.1.tgz"; - sha512 = "eGuFFw7Upda+g4p+QHvnW0RyTX/SVeJBDM/gCtMARO0cLuT2HcEKnTPvhjV6aGeqrCB/sbNop0Kszm0jsaWU4A=="; - }; - }; - "esquery-1.4.0" = { + "esquery-1.5.0" = { name = "esquery"; packageName = "esquery"; - version = "1.4.0"; + version = "1.5.0"; src = fetchurl { - url = "https://registry.npmjs.org/esquery/-/esquery-1.4.0.tgz"; - sha512 = "cCDispWt5vHHtwMY2YrAQ4ibFkAL8RbH5YGBnZBc90MolvvfkkQcJro/aZiAQUlQ3qgrYS6D6v8Gc5G5CQsc9w=="; + url = "https://registry.npmjs.org/esquery/-/esquery-1.5.0.tgz"; + sha512 = "YQLXUplAwJgCydQ78IMJywZCceoqk1oH01OERdSAJc/7U2AylwjhSCLDEtqwg811idIS/9fIU5GjG73IgjKMVg=="; }; }; "esrecurse-4.3.0" = { @@ -1660,15 +1606,6 @@ let sha512 = "KmfKL3b6G+RXvP8N1vr3Tq1kL/oCFgn2NYXEtqP8/L3pKapUA4G8cFVaoF3SU323CD4XypR/ffioHmkti6/Tag=="; }; }; - "estraverse-4.3.0" = { - name = "estraverse"; - packageName = "estraverse"; - version = "4.3.0"; - src = fetchurl { - url = "https://registry.npmjs.org/estraverse/-/estraverse-4.3.0.tgz"; - sha512 = "39nnKffWz8xN1BU/2c79n9nB9HDzo0niYUqx6xyqUnyoAnQyyWpOTdZEeiCch8BBu515t4wp9ZmgVfVhn9EBpw=="; - }; - }; "estraverse-5.3.0" = { name = "estraverse"; packageName = "estraverse"; @@ -1693,7 +1630,7 @@ let version = "0.3.5"; src = fetchurl { url = "https://registry.npmjs.org/event-emitter/-/event-emitter-0.3.5.tgz"; - sha1 = "df8c69eef1647923c7157b9ce83840610b02cc39"; + sha512 = "D9rRn9y7kLPnJ+hMq7S/nhvoKwwvVJahBi2BPmx3bvbsEdK3W9ii8cBSGjP+72/LnM4n6fo3+dkCX5FeTQruXA=="; }; }; "expand-brackets-0.1.5" = { @@ -1702,7 +1639,7 @@ let version = "0.1.5"; src = fetchurl { url = "https://registry.npmjs.org/expand-brackets/-/expand-brackets-0.1.5.tgz"; - sha1 = "df07284e342a807cd733ac5af72411e581d1177b"; + sha512 = "hxx03P2dJxss6ceIeri9cmYOT4SRs3Zk3afZwWpOsRqLqprhTR8u++SlC+sFGsQr7WGFPdMF7Gjc1njDLDK6UA=="; }; }; "expand-brackets-2.1.4" = { @@ -1711,7 +1648,7 @@ let version = "2.1.4"; src = fetchurl { url = "https://registry.npmjs.org/expand-brackets/-/expand-brackets-2.1.4.tgz"; - sha1 = "b77735e315ce30f6b6eff0f83b04151a22449622"; + sha512 = "w/ozOKR9Obk3qoWeY/WDi6MFta9AoMR+zud60mdnbniMcBxRuFJyDt2LdX/14A1UABeqk+Uk+LDfUpvoGKppZA=="; }; }; "expand-range-1.8.2" = { @@ -1720,7 +1657,7 @@ let version = "1.8.2"; src = fetchurl { url = "https://registry.npmjs.org/expand-range/-/expand-range-1.8.2.tgz"; - sha1 = "a299effd335fe2721ebae8e257ec79644fc85337"; + sha512 = "AFASGfIlnIbkKPQwX1yHaDjFvh/1gyKJODme52V6IORh69uEYgZp0o9C+qsIGNVEiuuhQU0CSSl++Rlegg1qvA=="; }; }; "expand-tilde-2.0.2" = { @@ -1729,16 +1666,16 @@ let version = "2.0.2"; src = fetchurl { url = "https://registry.npmjs.org/expand-tilde/-/expand-tilde-2.0.2.tgz"; - sha1 = "97e801aa052df02454de46b02bf621642cdc8502"; + sha512 = "A5EmesHW6rfnZ9ysHQjPdJRni0SRar0tjtG5MNtm9n5TUvsYU8oozprtRD4AqHxcZWWlVuAmQo2nWKfN9oyjTw=="; }; }; - "ext-1.6.0" = { + "ext-1.7.0" = { name = "ext"; packageName = "ext"; - version = "1.6.0"; + version = "1.7.0"; src = fetchurl { - url = "https://registry.npmjs.org/ext/-/ext-1.6.0.tgz"; - sha512 = "sdBImtzkq2HpkdRLtlLWDa6w4DX22ijZLKx8BMPUuKe1c5lbN6xwQDQCxSfxBQnHZ13ls/FH0MQZx/q/gr6FQg=="; + url = "https://registry.npmjs.org/ext/-/ext-1.7.0.tgz"; + sha512 = "6hxeJYaL110a9b5TEJSj0gojyHQAmA2ch5Os+ySCiA1QGdS697XWY1pzsrSjqA9LDEEgdB/KypIlR59RcLuHYw=="; }; }; "extend-3.0.2" = { @@ -1756,7 +1693,7 @@ let version = "2.0.1"; src = fetchurl { url = "https://registry.npmjs.org/extend-shallow/-/extend-shallow-2.0.1.tgz"; - sha1 = "51af7d614ad9a9f610ea1bafbb989d6b1c56890f"; + sha512 = "zCnTtlxNoAiDc3gqY2aYAWFx7XWWiasuF2K8Me5WbN8otHKTUKBwjPtNpRs/rbUZm7KxWAaNj7P1a/p52GbVug=="; }; }; "extend-shallow-3.0.2" = { @@ -1765,16 +1702,7 @@ let version = "3.0.2"; src = fetchurl { url = "https://registry.npmjs.org/extend-shallow/-/extend-shallow-3.0.2.tgz"; - sha1 = "26a71aaf073b39fb2127172746131c2704028db8"; - }; - }; - "external-editor-3.1.0" = { - name = "external-editor"; - packageName = "external-editor"; - version = "3.1.0"; - src = fetchurl { - url = "https://registry.npmjs.org/external-editor/-/external-editor-3.1.0.tgz"; - sha512 = "hMQ4CX1p1izmuLYyZqLMO/qGNw10wSv9QDCPfzXfyFrOaCSSoRfqE1Kf1s5an66J5JZC62NewG+mK49jOCtQew=="; + sha512 = "BwY5b5Ql4+qZoefgMj2NUmx+tehVTH/Kf4k1ZEtOHNFcm2wSxMRo992l6X3TIgni2eZVTZ85xMOjF31fwZAj6Q=="; }; }; "extglob-0.3.2" = { @@ -1783,7 +1711,7 @@ let version = "0.3.2"; src = fetchurl { url = "https://registry.npmjs.org/extglob/-/extglob-0.3.2.tgz"; - sha1 = "2e18ff3d2f49ab2765cec9023f011daa8d8349a1"; + sha512 = "1FOj1LOwn42TMrruOHGt18HemVnbwAmAak7krWk+wa93KXxGbK+2jpezm+ytJYDaBX0/SPLZFHKM7m+tKobWGg=="; }; }; "extglob-2.0.4" = { @@ -1801,7 +1729,7 @@ let version = "1.3.0"; src = fetchurl { url = "https://registry.npmjs.org/extsprintf/-/extsprintf-1.3.0.tgz"; - sha1 = "96918440e3041a7a414f8c52e3c574eb3c3e1e05"; + sha512 = "11Ndz7Nv+mvAC1j0ktTa7fAb0vLyGGX+rMHNBYQviQDGU0Hw7lhctJANqbPhu9nV9/izT/IntTgZ7Im/9LJs9g=="; }; }; "fancy-log-1.3.3" = { @@ -1837,7 +1765,7 @@ let version = "1.1.4"; src = fetchurl { url = "https://registry.npmjs.org/fast-levenshtein/-/fast-levenshtein-1.1.4.tgz"; - sha1 = "e6a754cc8f15e58987aa9cbd27af66fd6f4e5af9"; + sha512 = "Ia0sQNrMPXXkqVFt6w6M1n1oKo3NfKs+mvaV811Jwir7vAk9a6PVV9VPYf6X3BU97QiLEmuW3uXH9u87zDFfdw=="; }; }; "fast-levenshtein-2.0.6" = { @@ -1846,7 +1774,16 @@ let version = "2.0.6"; src = fetchurl { url = "https://registry.npmjs.org/fast-levenshtein/-/fast-levenshtein-2.0.6.tgz"; - sha1 = "3d8a5c66883a16a30ca8643e851f19baa7797917"; + sha512 = "DCXu6Ifhqcks7TZKY3Hxp3y6qphY5SJZmrWMDrKcERSOXWQdMhU9Ig/PYrzyw/ul9jOIyh0N4M0tbC5hodg8dw=="; + }; + }; + "fastq-1.15.0" = { + name = "fastq"; + packageName = "fastq"; + version = "1.15.0"; + src = fetchurl { + url = "https://registry.npmjs.org/fastq/-/fastq-1.15.0.tgz"; + sha512 = "wBrocU2LCXXa+lWBt8RoIRD89Fi8OdABODa/kEnyeyjS5aZO5/GNvI5sEINADqP/h8M29UHTHUb53sUu5Ihqdw=="; }; }; "fd-slicer-1.1.0" = { @@ -1855,25 +1792,16 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/fd-slicer/-/fd-slicer-1.1.0.tgz"; - sha1 = "25c7c89cb1f9077f8891bbe61d8f390eae256f1e"; - }; - }; - "figures-3.2.0" = { - name = "figures"; - packageName = "figures"; - version = "3.2.0"; - src = fetchurl { - url = "https://registry.npmjs.org/figures/-/figures-3.2.0.tgz"; - sha512 = "yaduQFRKLXYOGgEn6AZau90j3ggSOyiqXU0F9JZfeXYhNa+Jk4X+s45A2zg5jns87GAFa34BBm2kXw4XpNcbdg=="; + sha512 = "cE1qsB/VwyQozZ+q1dGxR8LBYNZeofhEdUNGSMbQD3Gw2lAzX9Zb3uIU6Ebc/Fmyjo9AWWfnn0AUCHqtevs/8g=="; }; }; - "file-entry-cache-5.0.1" = { + "file-entry-cache-6.0.1" = { name = "file-entry-cache"; packageName = "file-entry-cache"; - version = "5.0.1"; + version = "6.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/file-entry-cache/-/file-entry-cache-5.0.1.tgz"; - sha512 = "bCg29ictuBaKUwwArK4ouCaqDgLZcysCFLmM/Yn/FDoqndh/9vNuQfXRDvTuXKLxfD/JtZQGKFT8MGcJBK644g=="; + url = "https://registry.npmjs.org/file-entry-cache/-/file-entry-cache-6.0.1.tgz"; + sha512 = "7Gps/XWymbLk2QLYK4NzpMOrYjMhdIxXuIvy2QBsLE6ljuodKvdkWs/cpyJJ3CVIVpH0Oi1Hvg1ovbMzLdFBBg=="; }; }; "file-exists-2.0.0" = { @@ -1882,7 +1810,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/file-exists/-/file-exists-2.0.0.tgz"; - sha1 = "a24150665150e62d55bc5449281d88d2b0810dca"; + sha512 = "xiDzGS+oe7RleGLItoPTKVj3DjKHiVANV6dEyWTt3yB08H/AHuyvjh0aZ8jISQ53yhyTWVLsDzhJ5IbvPciBjg=="; }; }; "file-type-3.9.0" = { @@ -1891,7 +1819,7 @@ let version = "3.9.0"; src = fetchurl { url = "https://registry.npmjs.org/file-type/-/file-type-3.9.0.tgz"; - sha1 = "257a078384d1db8087bc449d107d52a52672b9e9"; + sha512 = "RLoqTXE8/vPmMuTI88DAzhMYC99I8BWv7zYP4A1puo5HIjEJ5EX48ighy4ZyKMG9EDXxBgW6e++cn7d1xuFghA=="; }; }; "file-type-5.2.0" = { @@ -1900,7 +1828,7 @@ let version = "5.2.0"; src = fetchurl { url = "https://registry.npmjs.org/file-type/-/file-type-5.2.0.tgz"; - sha1 = "2ddbea7c73ffe36368dfae49dc338c058c2b8ad6"; + sha512 = "Iq1nJ6D2+yIO4c8HHg4fyVb8mAJieo1Oloy1mLLaB2PvezNedhBVm+QU7g0qM42aiMbRXTxKKwGD17rjKNJYVQ=="; }; }; "file-type-6.2.0" = { @@ -1927,7 +1855,7 @@ let version = "2.0.1"; src = fetchurl { url = "https://registry.npmjs.org/filename-regex/-/filename-regex-2.0.1.tgz"; - sha1 = "c1c4b9bee3e09725ddb106b75c1e301fe2f18b26"; + sha512 = "BTCqyBaWBTsauvnHiE8i562+EdJj+oUpkqWp2R1iCoR8f6oo8STRu3of7WJJ0TqWtxN50a5YFpzYK4Jj9esYfQ=="; }; }; "filename-reserved-regex-2.0.0" = { @@ -1936,7 +1864,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/filename-reserved-regex/-/filename-reserved-regex-2.0.0.tgz"; - sha1 = "abf73dfab735d045440abfea2d91f389ebbfa229"; + sha512 = "lc1bnsSr4L4Bdif8Xb/qrtokGbq5zlsms/CYH8PP+WtCkGNF65DPiQY8vG3SakEdRn8Dlnm+gW/qWKKjS5sZzQ=="; }; }; "filenamify-2.1.0" = { @@ -1963,7 +1891,7 @@ let version = "4.0.0"; src = fetchurl { url = "https://registry.npmjs.org/fill-range/-/fill-range-4.0.0.tgz"; - sha1 = "d544811d428f98eb06a63dc402d2403c328c38f7"; + sha512 = "VcpLTWqWDiTerugjj8e3+esbg+skS3M9e54UuR3iCeIDMXCLTsAH8hTSzDQU/X6/6t3eYkOKoZSef2PlU6U1XQ=="; }; }; "fill-range-7.0.1" = { @@ -1981,7 +1909,7 @@ let version = "1.1.2"; src = fetchurl { url = "https://registry.npmjs.org/find-up/-/find-up-1.1.2.tgz"; - sha1 = "6b2e9822b1a2ce0a60ab64d610eccad53cb24d0f"; + sha512 = "jvElSjyuo4EMQGoTwo1uJU5pQMwTW5lS1x05zzfJuTIyLR3zwO27LYrxNg+dlvKpGOuGy/MzBdXh80g0ve5+HA=="; }; }; "find-up-5.0.0" = { @@ -1999,7 +1927,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/findup-sync/-/findup-sync-2.0.0.tgz"; - sha1 = "9326b1488c22d1a6088650a86901b2d9a90a2cbc"; + sha512 = "vs+3unmJT45eczmcAZ6zMJtxN3l/QXeccaXQx5cu/MeJMhewVfoWZqibRkOxPnmoR59+Zy5hjabfQc6JLSah4g=="; }; }; "findup-sync-3.0.0" = { @@ -2038,22 +1966,22 @@ let sha512 = "b6suED+5/3rTpUBdG1gupIl8MPFCAMA0QXwmljLhvCUKcUvdE4gWky9zpuGCcXHOsz4J9wPGNWq6OKpmIzz3hQ=="; }; }; - "flat-cache-2.0.1" = { + "flat-cache-3.0.4" = { name = "flat-cache"; packageName = "flat-cache"; - version = "2.0.1"; + version = "3.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/flat-cache/-/flat-cache-2.0.1.tgz"; - sha512 = "LoQe6yDuUMDzQAEH8sgmh4Md6oZnc/7PjtwjNFSzveXqSHt6ka9fPBuso7IGf9Rz4uqnSnWiFH2B/zj24a5ReA=="; + url = "https://registry.npmjs.org/flat-cache/-/flat-cache-3.0.4.tgz"; + sha512 = "dm9s5Pw7Jc0GvMYbshN6zchCA9RgQlzzEZX3vylR9IqFfS8XciblUXOKfW6SiuJ0e13eDYZoZV5wdrev7P3Nwg=="; }; }; - "flatted-2.0.2" = { + "flatted-3.2.7" = { name = "flatted"; packageName = "flatted"; - version = "2.0.2"; + version = "3.2.7"; src = fetchurl { - url = "https://registry.npmjs.org/flatted/-/flatted-2.0.2.tgz"; - sha512 = "r5wGx7YeOwNWNlCA0wQ86zKyDLMQr+/RB8xy74M4hTphfmjlijTSSXGuH8rnvKZnfT9i+75zmd8jcKdMR4O6jA=="; + url = "https://registry.npmjs.org/flatted/-/flatted-3.2.7.tgz"; + sha512 = "5nqDSxl8nn5BSNxyR3n4I6eDmbolI6WT+QqR547RwxQapgjQBmtktdP+HTBb/a/zLsbzERTONyUB5pefh5TtjQ=="; }; }; "flush-write-stream-1.1.1" = { @@ -2071,7 +1999,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/for-in/-/for-in-1.0.2.tgz"; - sha1 = "81068d295a8142ec0ac726c6e2200c30fb6d5e80"; + sha512 = "7EwmXrOjyL+ChxMhmG5lnW9MPt1aIeZEwKhQzoBUdTV0N3zuwWDZYVJatDvZ2OyzPUvdIAZDsCetk3coyMfcnQ=="; }; }; "for-own-0.1.5" = { @@ -2080,7 +2008,7 @@ let version = "0.1.5"; src = fetchurl { url = "https://registry.npmjs.org/for-own/-/for-own-0.1.5.tgz"; - sha1 = "5265c681a4f294dabbf17c9509b6763aa84510ce"; + sha512 = "SKmowqGTJoPzLO1T0BBJpkfp3EMacCMOuH40hOUbrbzElVktk4DioXVM99QkLCyKoiuOmyjgcWMpVz2xjE7LZw=="; }; }; "for-own-1.0.0" = { @@ -2089,7 +2017,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/for-own/-/for-own-1.0.0.tgz"; - sha1 = "c63332f415cedc4b04dbfe70cf836494c53cb44b"; + sha512 = "0OABksIGrxKK8K4kynWkQ7y1zounQxP+CWnyclVwj81KW3vlLlGUx57DKGcP/LH216GzqnstnPocF16Nxs0Ycg=="; }; }; "forever-agent-0.6.1" = { @@ -2098,7 +2026,7 @@ let version = "0.6.1"; src = fetchurl { url = "https://registry.npmjs.org/forever-agent/-/forever-agent-0.6.1.tgz"; - sha1 = "fbc71f0c41adeb37f96c577ad1ed42d8fdacca91"; + sha512 = "j0KLYPhm6zeac4lz3oJ3o65qvgQCcPubiyotZrXqEaG4hNagNYO8qdlUrX5vwqv9ohqeT/Z3j6+yW067yWWdUw=="; }; }; "form-data-2.3.3" = { @@ -2116,7 +2044,7 @@ let version = "0.2.1"; src = fetchurl { url = "https://registry.npmjs.org/fragment-cache/-/fragment-cache-0.2.1.tgz"; - sha1 = "4290fad27f13e89be7f33799c6bc5a0abfff0d19"; + sha512 = "GMBAbW9antB8iZRHLoGw0b3HANt57diZYFO/HL1JGIC1MjKrdmhxvrJbupnVvpys0zsz7yBApXdQyfepKly2kA=="; }; }; "fs-constants-1.0.0" = { @@ -2137,13 +2065,13 @@ let sha512 = "YJDaCJZEnBmcbw13fvdAM9AwNOJwOzrE4pqMqBq5nFiEqXUqHwlK4B+3pUw6JNvfSPtX05xFHtYy/1ni01eGCw=="; }; }; - "fs-jetpack-4.3.1" = { + "fs-jetpack-5.1.0" = { name = "fs-jetpack"; packageName = "fs-jetpack"; - version = "4.3.1"; + version = "5.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/fs-jetpack/-/fs-jetpack-4.3.1.tgz"; - sha512 = "dbeOK84F6BiQzk2yqqCVwCPWTxAvVGJ3fMQc6E2wuEohS28mR6yHngbrKuVCK1KHRx/ccByDylqu4H5PCP2urQ=="; + url = "https://registry.npmjs.org/fs-jetpack/-/fs-jetpack-5.1.0.tgz"; + sha512 = "Xn4fDhLydXkuzepZVsr02jakLlmoARPy+YWIclo4kh0GyNGUHnTqeH/w/qIsVn50dFxtp8otPL2t/HcPJBbxUA=="; }; }; "fs-mkdirp-stream-1.0.0" = { @@ -2152,7 +2080,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/fs-mkdirp-stream/-/fs-mkdirp-stream-1.0.0.tgz"; - sha1 = "0b7815fc3201c6a69e14db98ce098c16935259eb"; + sha512 = "+vSd9frUnapVC2RZYfL3FCB2p3g4TBhaUmrsWlSudsGdnxIuUvBB2QM1VZeBtc49QFwrp+wQLrDs3+xxDgI5gQ=="; }; }; "fs.realpath-1.0.0" = { @@ -2161,7 +2089,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/fs.realpath/-/fs.realpath-1.0.0.tgz"; - sha1 = "1504ad2523158caa40db4a2787cb01411994ea4f"; + sha512 = "OO0pH2lK6a0hZnAdau5ItzHPI6pUlvI7jMVnxUQRtw4owF2wk8lOSabtGDCTP4Ggrg2MbGnWO9X8K1t4+fGMDw=="; }; }; "fsevents-1.2.13" = { @@ -2191,15 +2119,6 @@ let sha512 = "yIovAzMX49sF8Yl58fSCWJ5svSLuaibPxXQJFLmBObTuCr0Mf1KiPopGM9NiFjiYBCbfaa2Fh6breQ6ANVTI0A=="; }; }; - "functional-red-black-tree-1.0.1" = { - name = "functional-red-black-tree"; - packageName = "functional-red-black-tree"; - version = "1.0.1"; - src = fetchurl { - url = "https://registry.npmjs.org/functional-red-black-tree/-/functional-red-black-tree-1.0.1.tgz"; - sha1 = "1b0ab3bd553b2a0d6399d29c0e3ea0b252078327"; - }; - }; "get-caller-file-1.0.3" = { name = "get-caller-file"; packageName = "get-caller-file"; @@ -2224,16 +2143,16 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/get-func-name/-/get-func-name-2.0.0.tgz"; - sha1 = "ead774abee72e20409433a066366023dd6887a41"; + sha512 = "Hm0ixYtaSZ/V7C8FJrtZIuBBI+iSgL+1Aq82zSu8VQNB4S3Gk8e7Qs3VwBDJAhmRZcFqkl3tQu36g/Foh5I5ig=="; }; }; - "get-intrinsic-1.1.1" = { + "get-intrinsic-1.2.1" = { name = "get-intrinsic"; packageName = "get-intrinsic"; - version = "1.1.1"; + version = "1.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/get-intrinsic/-/get-intrinsic-1.1.1.tgz"; - sha512 = "kWZrnVM42QCiEA2Ig1bG8zjoIMOgxWwYCEeNdwY6Tv/cOSeGpcoX4pXHfKUxNKVoArnrEr2e9srnAxxGIraS9Q=="; + url = "https://registry.npmjs.org/get-intrinsic/-/get-intrinsic-1.2.1.tgz"; + sha512 = "2DcsyfABl+gVHEfCOaTrWgyt+tb6MSEGmKq+kI5HwLbIYgjgmMcV8KQ41uaKz1xxUcn9tJtgFbQUEVcEbd0FYw=="; }; }; "get-proxy-2.1.0" = { @@ -2251,7 +2170,7 @@ let version = "2.3.1"; src = fetchurl { url = "https://registry.npmjs.org/get-stream/-/get-stream-2.3.1.tgz"; - sha1 = "5f38f93f346009666ee0150a054167f91bdd95de"; + sha512 = "AUGhbbemXxrZJRD5cDvKtQxLuYaIbNtDTK8YqupCI393Q2KSTreEsLUN3ZxAWFGiKTzL6nKuzfcIvieflUX9qA=="; }; }; "get-stream-3.0.0" = { @@ -2260,7 +2179,7 @@ let version = "3.0.0"; src = fetchurl { url = "https://registry.npmjs.org/get-stream/-/get-stream-3.0.0.tgz"; - sha1 = "8e943d1358dc37555054ecbe2edb05aa174ede14"; + sha512 = "GlhdIUuVakc8SJ6kK0zAFbiGzRFzNnY4jUuEbV9UROo4Y+0Ny4fjvcZFVTeDA4odpFyOQzaw6hXukJSq/f28sQ=="; }; }; "get-value-2.0.6" = { @@ -2269,7 +2188,7 @@ let version = "2.0.6"; src = fetchurl { url = "https://registry.npmjs.org/get-value/-/get-value-2.0.6.tgz"; - sha1 = "dc15ca1c672387ca76bd37ac0a395ba2042a2c28"; + sha512 = "Ln0UQDlxH1BapMu3GPtf7CuYNwRZf2gwCuPqbyG6pB8WfmFpzqcy4xtAaAMUhnNqjMKTiCPZG2oMT3YSx8U2NA=="; }; }; "getpass-0.1.7" = { @@ -2278,16 +2197,16 @@ let version = "0.1.7"; src = fetchurl { url = "https://registry.npmjs.org/getpass/-/getpass-0.1.7.tgz"; - sha1 = "5eff8e3e684d569ae4cb2b1282604e8ba62149fa"; + sha512 = "0fzj9JxOLfJ+XGLhR8ze3unN0KZCgZwiSSDz168VERjK8Wl8kVSdcu2kspd4s4wtAa1y/qrVRiAA0WclVsu0ng=="; }; }; - "glob-7.1.6" = { + "glob-7.2.0" = { name = "glob"; packageName = "glob"; - version = "7.1.6"; + version = "7.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/glob/-/glob-7.1.6.tgz"; - sha512 = "LwaxwyZ72Lk7vZINtNNrywX0ZuLyStrdDtabefZKAY5ZGJhVtgdznluResxNmPitE0SAO+O26sWTHeKSI2wMBA=="; + url = "https://registry.npmjs.org/glob/-/glob-7.2.0.tgz"; + sha512 = "lmLf6gtyrPq8tTjSmrO94wBeQbFR3HbLHbuyD69wuyQkImp2hWqMGB47OX65FBkPffO641IP9jWa1z4ivqG26Q=="; }; }; "glob-7.2.3" = { @@ -2305,7 +2224,7 @@ let version = "0.3.0"; src = fetchurl { url = "https://registry.npmjs.org/glob-base/-/glob-base-0.3.0.tgz"; - sha1 = "dbb164f6221b1c0b1ccf82aea328b497df0ea3c4"; + sha512 = "ab1S1g1EbO7YzauaJLkgLp7DZVAqj9M/dvKlTt8DkXA2tiOIcSMrlVI2J1RZyB5iJVccEscjGn+kpOG9788MHA=="; }; }; "glob-parent-2.0.0" = { @@ -2314,7 +2233,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/glob-parent/-/glob-parent-2.0.0.tgz"; - sha1 = "81383d72db054fcccf5336daa902f182f6edbb28"; + sha512 = "JDYOvfxio/t42HKdxkAYaCiBN7oYiuxykOxKxdaUW5Qn0zaYN3gRQWolrwdnf0shM9/EP0ebuuTmyoXNr1cC5w=="; }; }; "glob-parent-3.1.0" = { @@ -2323,7 +2242,7 @@ let version = "3.1.0"; src = fetchurl { url = "https://registry.npmjs.org/glob-parent/-/glob-parent-3.1.0.tgz"; - sha1 = "9e6af6299d8d3bd2bd40430832bd113df906c5ae"; + sha512 = "E8Ak/2+dZY6fnzlR7+ueWvhsH1SjHr4jjss4YS/h4py44jY9MhK/VFdaZJAWDz6BbL21KeteKxFSFpq8OS5gVA=="; }; }; "glob-parent-5.1.2" = { @@ -2335,13 +2254,22 @@ let sha512 = "AOIgSQCepiJYwP3ARnGx+5VnTu2HBYdzbGP45eLw1vr3zB3vZLeyed1sC9hnbcOc9/SrMyM5RPQrkGz4aS9Zow=="; }; }; + "glob-parent-6.0.2" = { + name = "glob-parent"; + packageName = "glob-parent"; + version = "6.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/glob-parent/-/glob-parent-6.0.2.tgz"; + sha512 = "XxwI8EOhVQgWp6iDL+3b0r86f4d6AX6zSU55HfB4ydCEuXLXc5FcYeOu+nnGftS4TEju/11rt4KJPTMgbfmv4A=="; + }; + }; "glob-stream-6.1.0" = { name = "glob-stream"; packageName = "glob-stream"; version = "6.1.0"; src = fetchurl { url = "https://registry.npmjs.org/glob-stream/-/glob-stream-6.1.0.tgz"; - sha1 = "7045c99413b3eb94888d83ab46d0b404cc7bdde4"; + sha512 = "uMbLGAP3S2aDOHUDfdoYcdIePUCfysbAd0IAoWVZbeGU/oNQ8asHVSshLDJUPWxfzj8zsCG7/XeHPHTtow0nsw=="; }; }; "glob-watcher-5.0.5" = { @@ -2368,16 +2296,16 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/global-prefix/-/global-prefix-1.0.2.tgz"; - sha1 = "dbf743c6c14992593c655568cb66ed32c0122ebe"; + sha512 = "5lsx1NUDHtSjfg0eHlmYvZKv8/nVqX4ckFbM+FrGcQ+04KWcWFo9P5MxPZYSzUvyzmdTbI7Eix8Q4IbELDqzKg=="; }; }; - "globals-12.4.0" = { + "globals-13.20.0" = { name = "globals"; packageName = "globals"; - version = "12.4.0"; + version = "13.20.0"; src = fetchurl { - url = "https://registry.npmjs.org/globals/-/globals-12.4.0.tgz"; - sha512 = "BWICuzzDvDoH54NHKCseDanAhE3CeDorgDL5MT6LMXXj2WCnd9UC2szdk4AWLfjdgNBCXLUanXYcpBBKOSWGwg=="; + url = "https://registry.npmjs.org/globals/-/globals-13.20.0.tgz"; + sha512 = "Qg5QtVkCy/kv3FUSlu4ukeZDVf9ee0iXLAUYX13gbR17bnejFTzr4iS9bY7kwCf1NztRNm1t91fjOiyx4CSwPQ=="; }; }; "glogg-1.0.2" = { @@ -2395,25 +2323,25 @@ let version = "6.7.1"; src = fetchurl { url = "https://registry.npmjs.org/got/-/got-6.7.1.tgz"; - sha1 = "240cd05785a9a18e561dc1b44b41c763ef1e8db0"; + sha512 = "Y/K3EDuiQN9rTZhBvPRWMLXIKdeD1Rj0nzunfoi0Yyn5WBEbzxXKU9Ub2X41oZBagVWOBU3MuDonFMgPWQFnwg=="; }; }; - "graceful-fs-4.2.10" = { + "graceful-fs-4.2.11" = { name = "graceful-fs"; packageName = "graceful-fs"; - version = "4.2.10"; + version = "4.2.11"; src = fetchurl { - url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.2.10.tgz"; - sha512 = "9ByhssR2fPVsNZj478qUUbKfmL0+t5BDVyjShtyZZLiK7ZDAArFFfopyOTj0M05wE2tJPisA4iTnnXl2YoPvOA=="; + url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.2.11.tgz"; + sha512 = "RbJ5/jmFcNNCcDV5o9eTnBLJ/HszWV0P73bc+Ff4nS/rJj+YaS6IGyiOL0VoBYX+l1Wrl3k63h/KrH+nhJ0XvQ=="; }; }; - "growl-1.10.5" = { - name = "growl"; - packageName = "growl"; - version = "1.10.5"; + "graphemer-1.4.0" = { + name = "graphemer"; + packageName = "graphemer"; + version = "1.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/growl/-/growl-1.10.5.tgz"; - sha512 = "qBr4OuELkhPenW6goKVXiv47US3clb3/IbuWF9KNKEijAy9oeHxU9IgzjvJhHkUzhaj7rOUD7+YGWqUjLp5oSA=="; + url = "https://registry.npmjs.org/graphemer/-/graphemer-1.4.0.tgz"; + sha512 = "EtKwoO6kxCL9WO5xipiHTZlSzBm7WLT627TqC/uVRd0HKmq8NXyebnNYxDoBi7wt8eTWrUrKXCOVaFq9x1kgag=="; }; }; "gulp-4.0.2" = { @@ -2434,13 +2362,13 @@ let sha512 = "zzGBl5fHo0EKSXsHzjspp3y5CONegCm8ErO5Qh0UzFzk2y4tMvzLWhoDokADbarfZRL2pGpRp7yt6gfJX4ph7A=="; }; }; - "gulp-sourcemaps-2.6.5" = { + "gulp-sourcemaps-3.0.0" = { name = "gulp-sourcemaps"; packageName = "gulp-sourcemaps"; - version = "2.6.5"; + version = "3.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/gulp-sourcemaps/-/gulp-sourcemaps-2.6.5.tgz"; - sha512 = "SYLBRzPTew8T5Suh2U8jCSDKY+4NARua4aqjj8HOysBh2tSgT9u4jc1FYirAdPx1akUxxDeK++fqw6Jg0LkQRg=="; + url = "https://registry.npmjs.org/gulp-sourcemaps/-/gulp-sourcemaps-3.0.0.tgz"; + sha512 = "RqvUckJkuYqy4VaIH60RMal4ZtG0IbQ6PXMNkNsshEGJ9cldUPRb/YCgboYae+CLAs1HQNb4ADTKCx65HInquQ=="; }; }; "gulplog-1.0.0" = { @@ -2449,7 +2377,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/gulplog/-/gulplog-1.0.0.tgz"; - sha1 = "e28c4d45d05ecbbed818363ce8f9c5926229ffe5"; + sha512 = "hm6N8nrm3Y08jXie48jsC55eCZz9mnb4OirAStEk2deqeyhXU3C1otDVh+ccttMuc1sBi6RX6ZJ720hs9RCvgw=="; }; }; "har-schema-2.0.0" = { @@ -2458,7 +2386,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/har-schema/-/har-schema-2.0.0.tgz"; - sha1 = "a94c2224ebcac04782a0d9035521f24735b7ec92"; + sha512 = "Oqluz6zhGX8cyRaTQlFMPw80bSJVG2x/cFb8ZPhUILGgHka9SsokCCOQgpveePerqidZOrT14ipqfJb7ILcW5Q=="; }; }; "har-validator-5.1.5" = { @@ -2485,16 +2413,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/has-ansi/-/has-ansi-2.0.0.tgz"; - sha1 = "34f5049ce1ecdf2b0649af3ef24e45ed35416d91"; - }; - }; - "has-flag-3.0.0" = { - name = "has-flag"; - packageName = "has-flag"; - version = "3.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/has-flag/-/has-flag-3.0.0.tgz"; - sha1 = "b5d454dc2199ae225699f3467e5a07f3b955bafd"; + sha512 = "C8vBJ8DwUCx19vhm7urhTuUsr4/IyP6l4VzNQDv+ryHQObW3TTTp9yB68WpYgRe2bbaGuZ/se74IqFeVnMnLZg=="; }; }; "has-flag-4.0.0" = { @@ -2515,6 +2434,15 @@ let sha512 = "62DVLZGoiEBDHQyqG4w9xCuZ7eJEwNmJRWw2VY84Oedb7WFcA27fiEVe8oUQx9hAUJ4ekurquucTGwsyO1XGdQ=="; }; }; + "has-proto-1.0.1" = { + name = "has-proto"; + packageName = "has-proto"; + version = "1.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/has-proto/-/has-proto-1.0.1.tgz"; + sha512 = "7qE+iP+O+bgF9clE5+UoBFzE65mlBiVj3tKCrlNQ0Ogwm0BjpT/gK4SlLYDMybDh5I3TCTKnPPa0oMG7JDYrhg=="; + }; + }; "has-symbol-support-x-1.4.2" = { name = "has-symbol-support-x"; packageName = "has-symbol-support-x"; @@ -2548,7 +2476,7 @@ let version = "0.3.1"; src = fetchurl { url = "https://registry.npmjs.org/has-value/-/has-value-0.3.1.tgz"; - sha1 = "7b1f58bada62ca827ec0a2078025654845995e1f"; + sha512 = "gpG936j8/MzaeID5Yif+577c17TxaDmhuyVgSwtnL/q8UUTySg8Mecb+8Cf1otgLoD7DDH75axp86ER7LFsf3Q=="; }; }; "has-value-1.0.0" = { @@ -2557,7 +2485,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/has-value/-/has-value-1.0.0.tgz"; - sha1 = "18b281da585b1c5c51def24c930ed29a0be6b177"; + sha512 = "IBXk4GTsLYdQ7Rvt+GRBrFSVEkmuOUy4re0Xjd9kJSUQpnTrWR4/y9RpfexN9vkAPMFuQoeWKwqzPozRTlasGw=="; }; }; "has-values-0.1.4" = { @@ -2566,7 +2494,7 @@ let version = "0.1.4"; src = fetchurl { url = "https://registry.npmjs.org/has-values/-/has-values-0.1.4.tgz"; - sha1 = "6d61de95d91dfca9b9a02089ad384bff8f62b771"; + sha512 = "J8S0cEdWuQbqD9//tlZxiMuMNmxB8PlEwvYwuxsTmR1G5RXUePEX/SJn7aD0GMLieuZYSwNH0cQuJGwnYunXRQ=="; }; }; "has-values-1.0.0" = { @@ -2575,7 +2503,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/has-values/-/has-values-1.0.0.tgz"; - sha1 = "95b0b63fec2146619a6fe57fe75628d5a39efe4f"; + sha512 = "ODYZC64uqzmtfGMEAX/FvZiRyWLpAC3vYnNunURUnkGVTS+mI0smVsWaPydRBsE3g+ok7h960jChO8mFcWlHaQ=="; }; }; "he-1.2.0" = { @@ -2611,16 +2539,7 @@ let version = "1.2.0"; src = fetchurl { url = "https://registry.npmjs.org/http-signature/-/http-signature-1.2.0.tgz"; - sha1 = "9aecd925114772f3d95b65a60abb8f7c18fbace1"; - }; - }; - "iconv-lite-0.4.24" = { - name = "iconv-lite"; - packageName = "iconv-lite"; - version = "0.4.24"; - src = fetchurl { - url = "https://registry.npmjs.org/iconv-lite/-/iconv-lite-0.4.24.tgz"; - sha512 = "v3MXnZAcvnywkTUEZomIActle7RXXeedOR31wwl7VlyoXO4Qi9arvSenNQWne1TcRwhCL1HwLI21bEqdpj8/rA=="; + sha512 = "CAbnr6Rz4CYQkLYUtSNXxQPUH2gK8f3iWexVlsnMeD+GjlsQ0Xsy1cOX+mN3dtxYomRy21CiOzU8Uhw6OwncEQ=="; }; }; "ieee754-1.2.1" = { @@ -2632,13 +2551,13 @@ let sha512 = "dcyqhDvX1C46lXZcVqCpK+FtMRQVdIMN6/Df5js2zouUsqG7I6sFxitIC+7KYK29KdXOLHdu9zL4sFnoVQnqaA=="; }; }; - "ignore-4.0.6" = { + "ignore-5.2.4" = { name = "ignore"; packageName = "ignore"; - version = "4.0.6"; + version = "5.2.4"; src = fetchurl { - url = "https://registry.npmjs.org/ignore/-/ignore-4.0.6.tgz"; - sha512 = "cyFDKrqc/YdcWFniJhzI42+AzS+gNwmUzOSFcRCQYwySuBBBy/KjuxWLZ/FHEH6Moq1NizMOBWyTcv8O4OZIMg=="; + url = "https://registry.npmjs.org/ignore/-/ignore-5.2.4.tgz"; + sha512 = "MAb38BcSbH0eHNBxn7ql2NH/kX33OkB3lZ1BNdh7ENeRChHTYsTvWrMubiIAMNS2llXEEgZ1MUOBtXChP3kaFQ=="; }; }; "immediate-3.0.6" = { @@ -2647,7 +2566,7 @@ let version = "3.0.6"; src = fetchurl { url = "https://registry.npmjs.org/immediate/-/immediate-3.0.6.tgz"; - sha1 = "9db1dbd0faf8de6fbe0f5dd5e56bb606280de69b"; + sha512 = "XXOFtyqDjNDAQxVfYxuF7g9Il/IbWmmlQg2MYKOH8ExIT1qg6xc4zyS3HaEEATgs1btfzxq15ciUiY7gjSXRGQ=="; }; }; "import-fresh-3.3.0" = { @@ -2665,7 +2584,7 @@ let version = "0.1.4"; src = fetchurl { url = "https://registry.npmjs.org/imurmurhash/-/imurmurhash-0.1.4.tgz"; - sha1 = "9218b9b2b928a238b13dc4fb6b6d576f231453ea"; + sha512 = "JmXMZ6wuvDmLiHEml9ykzqO6lwFbof0GG4IkcGaENdCRDDmMVnny7s5HsIgHCbaq0w2MyPhDqkhTUgS2LU2PHA=="; }; }; "inflight-1.0.6" = { @@ -2674,7 +2593,7 @@ let version = "1.0.6"; src = fetchurl { url = "https://registry.npmjs.org/inflight/-/inflight-1.0.6.tgz"; - sha1 = "49bd6331d7d02d0c09bc910a1075ba8165b56df9"; + sha512 = "k92I/b08q4wvFscXCLvqfsHCrjrF7yiXsQuIVvVE7N82W3+aqpzuUdBbfhWcy/FZR3/4IgflMgKLOsvPDrGCJA=="; }; }; "inherits-2.0.4" = { @@ -2695,15 +2614,6 @@ let sha512 = "JV/yugV2uzW5iMRSiZAyDtQd+nxtUnjeLt0acNdw98kKLrvuRVyB80tsREOE7yvGVgalhZ6RNXCmEHkUKBKxew=="; }; }; - "inquirer-7.3.3" = { - name = "inquirer"; - packageName = "inquirer"; - version = "7.3.3"; - src = fetchurl { - url = "https://registry.npmjs.org/inquirer/-/inquirer-7.3.3.tgz"; - sha512 = "JG3eIAj5V9CwcGvuOmoo6LB9kbAYT8HXffUl6memuszlwDC/qvFAJw49XJ5NROSFNPxp3iQg1GqkFhaY/CR0IA=="; - }; - }; "interpret-1.4.0" = { name = "interpret"; packageName = "interpret"; @@ -2719,7 +2629,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/invert-kv/-/invert-kv-1.0.0.tgz"; - sha1 = "104a8e4aaca6d3d8cd157a8ef8bfab2d7a3ffdb6"; + sha512 = "xgs2NH9AE66ucSq4cNG1nhSFghr5l6tdL15Pk+jl46bmmBapgoaY/AacXyaDznAqmGL99TiLSQgO/XazFSKYeQ=="; }; }; "is-absolute-1.0.0" = { @@ -2737,7 +2647,7 @@ let version = "0.1.6"; src = fetchurl { url = "https://registry.npmjs.org/is-accessor-descriptor/-/is-accessor-descriptor-0.1.6.tgz"; - sha1 = "a9e12cb3ae8d876727eeef3843f8a0897b5c98d6"; + sha512 = "e1BM1qnDbMRG3ll2U9dSK0UMHuWOs3pY3AtcFsmvwPtKL3MML/Q86i+GilLfvqEs4GW+ExB91tQ3Ig9noDIZ+A=="; }; }; "is-accessor-descriptor-1.0.0" = { @@ -2755,7 +2665,7 @@ let version = "0.2.1"; src = fetchurl { url = "https://registry.npmjs.org/is-arrayish/-/is-arrayish-0.2.1.tgz"; - sha1 = "77c99840527aa8ecb1a8ba697b80645a7a926a9d"; + sha512 = "zz06S8t0ozoDXMG+ube26zeCTNXcKIPJZJi8hBrF4idCLms4CG9QtK7qBl1boi5ODzFpjswb5JPmHCbMpjaYzg=="; }; }; "is-binary-path-1.0.1" = { @@ -2764,7 +2674,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/is-binary-path/-/is-binary-path-1.0.1.tgz"; - sha1 = "75f16642b480f187a711c814161fd3a4a7655898"; + sha512 = "9fRVlXc0uCxEDj1nQzaWONSpbTfx0FmJfzHF7pwlI8DkWGoHBBea4Pg5Ky0ojwwxQmnSifgbKkI06Qv0Ljgj+Q=="; }; }; "is-binary-path-2.1.0" = { @@ -2785,13 +2695,13 @@ let sha512 = "NcdALwpXkTm5Zvvbk7owOUSvVvBKDgKP5/ewfXEznmQFfs4ZRmanOeKBTjRVjka3QFoN6XJ+9F3USqfHqTaU5w=="; }; }; - "is-core-module-2.9.0" = { + "is-core-module-2.12.1" = { name = "is-core-module"; packageName = "is-core-module"; - version = "2.9.0"; + version = "2.12.1"; src = fetchurl { - url = "https://registry.npmjs.org/is-core-module/-/is-core-module-2.9.0.tgz"; - sha512 = "+5FPy5PnwmO3lvfMb0AsoPaBG+5KHUI0wYFXOtYPnVVVspTFUuMZNfNaNVRt3FZadstu2c8x23vykRW/NBoU6A=="; + url = "https://registry.npmjs.org/is-core-module/-/is-core-module-2.12.1.tgz"; + sha512 = "Q4ZuBAe2FUsKtyQJoQHlvP8OvBERxO3jEmy1I7hcRXcJBGGHFh/aJBswbXuS9sgrDH2QUO8ilkwNPHvHMd8clg=="; }; }; "is-data-descriptor-0.1.4" = { @@ -2800,7 +2710,7 @@ let version = "0.1.4"; src = fetchurl { url = "https://registry.npmjs.org/is-data-descriptor/-/is-data-descriptor-0.1.4.tgz"; - sha1 = "0b5ee648388e2c860282e793f1856fec3f301b56"; + sha512 = "+w9D5ulSoBNlmw9OHn3U2v51SyoCd0he+bB3xMl62oijhrspxowjU+AIcDY0N3iEJbUEkB15IlMASQsxYigvXg=="; }; }; "is-data-descriptor-1.0.0" = { @@ -2836,7 +2746,7 @@ let version = "1.0.3"; src = fetchurl { url = "https://registry.npmjs.org/is-dotfile/-/is-dotfile-1.0.3.tgz"; - sha1 = "a6a2f32ffd2dfb04f5ca25ecd0f6b83cf798a1e1"; + sha512 = "9YclgOGtN/f8zx0Pr4FQYMdibBiTaH3sn52vjYip4ZSf6C4/6RfTEZ+MR4GvKhCxdPh21Bg42/WL55f6KSnKpg=="; }; }; "is-equal-shallow-0.1.3" = { @@ -2845,7 +2755,7 @@ let version = "0.1.3"; src = fetchurl { url = "https://registry.npmjs.org/is-equal-shallow/-/is-equal-shallow-0.1.3.tgz"; - sha1 = "2238098fc221de0bcfa5d9eac4c45d638aa1c534"; + sha512 = "0EygVC5qPvIyb+gSz7zdD5/AAoS6Qrx1e//6N4yv4oNm30kqvdmG66oZFWVlQHUWe5OjP08FuTw2IdT0EOTcYA=="; }; }; "is-extendable-0.1.1" = { @@ -2854,7 +2764,7 @@ let version = "0.1.1"; src = fetchurl { url = "https://registry.npmjs.org/is-extendable/-/is-extendable-0.1.1.tgz"; - sha1 = "62b110e289a471418e3ec36a617d472e301dfc89"; + sha512 = "5BMULNob1vgFX6EjQw5izWDxrecWK9AM72rugNr0TFldMOi0fj6Jk+zeKIt0xGj4cEfQIJth4w3OKWOJ4f+AFw=="; }; }; "is-extendable-1.0.1" = { @@ -2872,7 +2782,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/is-extglob/-/is-extglob-1.0.0.tgz"; - sha1 = "ac468177c4943405a092fc8f29760c6ffc6206c0"; + sha512 = "7Q+VbVafe6x2T+Tu6NcOf6sRklazEPmBoB3IWk3WdGZM2iGUwU/Oe3Wtq5lSEkDTTlpp8yx+5t4pzO/i9Ty1ww=="; }; }; "is-extglob-2.1.1" = { @@ -2881,7 +2791,7 @@ let version = "2.1.1"; src = fetchurl { url = "https://registry.npmjs.org/is-extglob/-/is-extglob-2.1.1.tgz"; - sha1 = "a88c02535791f02ed37c76a1b9ea9773c833f8c2"; + sha512 = "SbKbANkN603Vi4jEZv49LeVJMn4yGwsbzZworEoyEiutsN3nJYdbO36zfhGJ6QEDpOZIFkDtnq5JRxmvl3jsoQ=="; }; }; "is-fullwidth-code-point-1.0.0" = { @@ -2890,16 +2800,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/is-fullwidth-code-point/-/is-fullwidth-code-point-1.0.0.tgz"; - sha1 = "ef9e31386f031a7f0d643af82fde50c457ef00cb"; - }; - }; - "is-fullwidth-code-point-2.0.0" = { - name = "is-fullwidth-code-point"; - packageName = "is-fullwidth-code-point"; - version = "2.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/is-fullwidth-code-point/-/is-fullwidth-code-point-2.0.0.tgz"; - sha1 = "a3b30a5c4f199183167aaab93beefae3ddfb654f"; + sha512 = "1pqUqRjkhPJ9miNq9SwMfdvi6lBJcd6eFxvfaivQhaH3SgisfiuudvFntdKOmxuee/77l+FPjKrQjWvmPjWrRw=="; }; }; "is-fullwidth-code-point-3.0.0" = { @@ -2917,7 +2818,7 @@ let version = "2.0.1"; src = fetchurl { url = "https://registry.npmjs.org/is-glob/-/is-glob-2.0.1.tgz"; - sha1 = "d096f926a3ded5600f3fdfd91198cb0888c2d863"; + sha512 = "a1dBeB19NXsf/E0+FHqkagizel/LQw2DjSQpvQrj3zT+jYPpaUCryPnrQajXKFLCMuf4I6FhRpaGtw4lPrG6Eg=="; }; }; "is-glob-3.1.0" = { @@ -2926,7 +2827,7 @@ let version = "3.1.0"; src = fetchurl { url = "https://registry.npmjs.org/is-glob/-/is-glob-3.1.0.tgz"; - sha1 = "7ba5ae24217804ac70707b96922567486cc3e84a"; + sha512 = "UFpDDrPgM6qpnFNI+rh/p3bUaq9hKLZN8bMUWzxmcnZVS3omf4IPK+BrewlnWjO1WmUsMYuSjKh4UJuV4+Lqmw=="; }; }; "is-glob-4.0.3" = { @@ -2944,7 +2845,7 @@ let version = "4.0.1"; src = fetchurl { url = "https://registry.npmjs.org/is-natural-number/-/is-natural-number-4.0.1.tgz"; - sha1 = "ab9d76e1db4ced51e35de0c72ebecf09f734cde8"; + sha512 = "Y4LTamMe0DDQIIAlaer9eKebAlDSV6huy+TWhJVPlzZh2o4tRP5SQWFlLn5N0To4mDD22/qdOq+veo1cSISLgQ=="; }; }; "is-negated-glob-1.0.0" = { @@ -2953,7 +2854,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/is-negated-glob/-/is-negated-glob-1.0.0.tgz"; - sha1 = "6910bca5da8c95e784b5751b976cf5a10fee36d2"; + sha512 = "czXVVn/QEmgvej1f50BZ648vUI+em0xqMq2Sn+QncCLN4zj1UAxlT+kw/6ggQTOaZPd1HqKQGEqbpQVtJucWug=="; }; }; "is-number-2.1.0" = { @@ -2962,7 +2863,7 @@ let version = "2.1.0"; src = fetchurl { url = "https://registry.npmjs.org/is-number/-/is-number-2.1.0.tgz"; - sha1 = "01fcbbb393463a548f2f466cce16dece49db908f"; + sha512 = "QUzH43Gfb9+5yckcrSA0VBDwEtDUchrk4F6tfJZQuNzDJbEDB9cZNzSfXGQ1jqmdDY/kl41lUOWM9syA8z8jlg=="; }; }; "is-number-3.0.0" = { @@ -2971,7 +2872,7 @@ let version = "3.0.0"; src = fetchurl { url = "https://registry.npmjs.org/is-number/-/is-number-3.0.0.tgz"; - sha1 = "24fd6201a4782cf50561c810276afc7d12d71195"; + sha512 = "4cboCqIpliH+mAvFNegjZQ4kgKc3ZUhQVr3HvWbSh5q3WH2v82ct+T2Y1hdU5Gdtorx/cLifQjqCbL7bpznLTg=="; }; }; "is-number-4.0.0" = { @@ -3001,6 +2902,15 @@ let sha512 = "2rRIahhZr2UWb45fIOuvZGpFtz0TyOZLf32KxBbSoUCeZR495zCKlWUKKUByk3geS2eAs7ZAABt0Y/Rx0GiQGA=="; }; }; + "is-path-inside-3.0.3" = { + name = "is-path-inside"; + packageName = "is-path-inside"; + version = "3.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/is-path-inside/-/is-path-inside-3.0.3.tgz"; + sha512 = "Fd4gABb+ycGAmKou8eMftCupSir5lRxqf4aD/vd0cD2qc4HL07OjCeuHMr8Ro4CoMaeCKDB0/ECBOVWjTwUvPQ=="; + }; + }; "is-plain-obj-2.1.0" = { name = "is-plain-obj"; packageName = "is-plain-obj"; @@ -3034,7 +2944,7 @@ let version = "0.1.1"; src = fetchurl { url = "https://registry.npmjs.org/is-posix-bracket/-/is-posix-bracket-0.1.1.tgz"; - sha1 = "3334dc79774368e92f016e6fbc0a88f5cd6e6bc4"; + sha512 = "Yu68oeXJ7LeWNmZ3Zov/xg/oDBnBK2RNxwYY1ilNJX+tKKZqgPK+qOn/Gs9jEu66KDY9Netf5XLKNGzas/vPfQ=="; }; }; "is-primitive-2.0.0" = { @@ -3043,7 +2953,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/is-primitive/-/is-primitive-2.0.0.tgz"; - sha1 = "207bab91638499c07b2adf240a41a87210034575"; + sha512 = "N3w1tFaRfk3UrPfqeRyD+GYDASU3W5VinKhlORy8EWVf/sIdDL9GAcew85XmktCfH+ngG7SRXEVDoO18WMdB/Q=="; }; }; "is-promise-2.2.2" = { @@ -3061,7 +2971,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/is-redirect/-/is-redirect-1.0.0.tgz"; - sha1 = "1d03dded53bd8db0f30c26e4f95d36fc7c87dc24"; + sha512 = "cr/SlUEe5zOGmzvj9bUyC4LVvkNVAXu4GytXLNMr1pny+a65MpQ9IJzFHD5vi7FyJgb4qt27+eS3TuQnqB+RQw=="; }; }; "is-relative-1.0.0" = { @@ -3088,7 +2998,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/is-stream/-/is-stream-1.1.0.tgz"; - sha1 = "12d4a3dd4e68e0b79ceb8dbc84173ae80d91ca44"; + sha512 = "uQPm8kcs47jx38atAcWTVxyltQYoPT68y9aWYdV6yWXSyW8mzSat0TL6CiWdZeCdF3KrAvpVtnHbTv4RN+rqdQ=="; }; }; "is-typedarray-1.0.0" = { @@ -3097,7 +3007,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/is-typedarray/-/is-typedarray-1.0.0.tgz"; - sha1 = "e479c80858df0c1b11ddda6940f96011fcda4a9a"; + sha512 = "cyA56iCMHAh5CdzjJIa4aohJyeO1YbwLi3Jc35MmRU6poroFjIGZzUzupGiRPOjgHg9TLu43xbpwXk523fMxKA=="; }; }; "is-unc-path-1.0.0" = { @@ -3109,13 +3019,22 @@ let sha512 = "mrGpVd0fs7WWLfVsStvgF6iEJnbjDFZh9/emhRDcGWTduTfNHd9CHeUwH3gYIjdbwo4On6hunkztwOaAw0yllQ=="; }; }; + "is-unicode-supported-0.1.0" = { + name = "is-unicode-supported"; + packageName = "is-unicode-supported"; + version = "0.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/is-unicode-supported/-/is-unicode-supported-0.1.0.tgz"; + sha512 = "knxG2q4UC3u8stRGyAVJCOdxFmv5DZiRcdlIaAQXAbSfJya+OhopNotLQrstBhququ4ZpuKbDc/8S6mgXgPFPw=="; + }; + }; "is-utf8-0.2.1" = { name = "is-utf8"; packageName = "is-utf8"; version = "0.2.1"; src = fetchurl { url = "https://registry.npmjs.org/is-utf8/-/is-utf8-0.2.1.tgz"; - sha1 = "4b0da1442104d1b336340e80797e865cf39f7d72"; + sha512 = "rMYPYvCzsXywIsldgLaSoPlw5PfoB/ssr7hY4pLfcodrA5M/eArza1a9VmTiNIBNMjOGr1Ow9mTyU2o69U6U9Q=="; }; }; "is-valid-glob-1.0.0" = { @@ -3124,7 +3043,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/is-valid-glob/-/is-valid-glob-1.0.0.tgz"; - sha1 = "29bf3eff701be2d4d315dbacc39bc39fe8f601aa"; + sha512 = "AhiROmoEFDSsjx8hW+5sGwgKVIORcXnrlAx/R0ZSeaPw70Vw0CqkGBBhHGL58Uox2eXnU1AnvXJl1XlyedO5bA=="; }; }; "is-windows-1.0.2" = { @@ -3142,7 +3061,7 @@ let version = "0.0.1"; src = fetchurl { url = "https://registry.npmjs.org/isarray/-/isarray-0.0.1.tgz"; - sha1 = "8a18acfca9a8f4177e09abfc6038939b05d1eedf"; + sha512 = "D2S+3GLxWH+uhrNEcoh/fnmYeP8E8/zHl644d/jdA0g2uyXvy3sb0qxotE+ne0LtccHknQzWwZEzhak7oJ0COQ=="; }; }; "isarray-1.0.0" = { @@ -3151,7 +3070,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/isarray/-/isarray-1.0.0.tgz"; - sha1 = "bb935d48582cba168c06834957a54a3e07124f11"; + sha512 = "VLghIWNM6ELQzo7zwmcg0NmTVyWKYjvIeM83yjp0wRDTmUnrM678fQbcKBo6n2CJEF0szoG//ytg+TKla89ALQ=="; }; }; "isexe-2.0.0" = { @@ -3160,7 +3079,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/isexe/-/isexe-2.0.0.tgz"; - sha1 = "e8fbf374dc556ff8947a10dcb0572d633f2cfa10"; + sha512 = "RHxMLp9lnKHGHRng9QFhRCMbYAcVpn69smSGcq3f36xjgVVWThj4qqLbTLlq7Ssj8B+fIQ1EuCEGI2lKsyQeIw=="; }; }; "isobject-2.1.0" = { @@ -3169,7 +3088,7 @@ let version = "2.1.0"; src = fetchurl { url = "https://registry.npmjs.org/isobject/-/isobject-2.1.0.tgz"; - sha1 = "f065561096a3f1da2ef46272f815c840d87e0c89"; + sha512 = "+OUdGJlgjOBZDfxnDjYYG6zp487z0JGNQq3cYQYg5f5hKR+syHMsaztzGeml/4kGG55CSpKSpWTY+jYGgsHLgA=="; }; }; "isobject-3.0.1" = { @@ -3178,7 +3097,7 @@ let version = "3.0.1"; src = fetchurl { url = "https://registry.npmjs.org/isobject/-/isobject-3.0.1.tgz"; - sha1 = "4e431e92b11a9731636aa1f9c8d1ccbcfdab78df"; + sha512 = "WhB9zCku7EGTj/HQQRz5aUQEUeoQZH2bWcltRErOpymJ4boYE6wL9Tbr23krRPSZ+C5zqNSrSw+Cc7sZZ4b7vg=="; }; }; "isstream-0.1.2" = { @@ -3187,7 +3106,7 @@ let version = "0.1.2"; src = fetchurl { url = "https://registry.npmjs.org/isstream/-/isstream-0.1.2.tgz"; - sha1 = "47e63f7af55afa6f92e1500e690eb8b8529c099a"; + sha512 = "Yljz7ffyPbrLpLngrMtZ7NduUgVvi6wG9RJ9IUcyCd59YQ911PBJphODUcbOVbqYfxe1wuYf/LJ8PauMRwsM/g=="; }; }; "isurl-1.0.0" = { @@ -3208,31 +3127,13 @@ let sha512 = "sga3MHh9sgQN2+pJ9VYZ+1LPwXOxuBJBA5nrR5/ofPfuiJBE2hnjsaN8se8JznOmGLN2p49Pe5U/ttafcs/apA=="; }; }; - "js-tokens-4.0.0" = { - name = "js-tokens"; - packageName = "js-tokens"; - version = "4.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/js-tokens/-/js-tokens-4.0.0.tgz"; - sha512 = "RdJUflcE3cUzKiMqQgsCu06FPu9UdIJO0beYbPhHN4k6apgJtifcoCtT9bcxOpYBtpD2kCM6Sbzg4CausW/PKQ=="; - }; - }; - "js-yaml-3.14.1" = { + "js-yaml-4.1.0" = { name = "js-yaml"; packageName = "js-yaml"; - version = "3.14.1"; + version = "4.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/js-yaml/-/js-yaml-3.14.1.tgz"; - sha512 = "okMH7OXXJ7YrN9Ok3/SXrnu4iX9yOk+25nqX4imS2npuvTYDmo/QEZoqwZkYaIDk3jVvBOTOIEgEhaLOynBS9g=="; - }; - }; - "js-yaml-4.0.0" = { - name = "js-yaml"; - packageName = "js-yaml"; - version = "4.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/js-yaml/-/js-yaml-4.0.0.tgz"; - sha512 = "pqon0s+4ScYUvX30wxQi3PogGFAlUyH0awepWvwkj4jD4v+ova3RiYw8bmA6x2rDrEaj8i/oWKoRxpVNW+Re8Q=="; + url = "https://registry.npmjs.org/js-yaml/-/js-yaml-4.1.0.tgz"; + sha512 = "wpxZs9NoxZaJESJGIZTyDEaYpl0FKSA+FB9aJiyemKhMwkxQg63h4T1KJgUGHpTqPDNRcmmYLugrRjJlBtWvRA=="; }; }; "jsbn-0.1.1" = { @@ -3241,16 +3142,16 @@ let version = "0.1.1"; src = fetchurl { url = "https://registry.npmjs.org/jsbn/-/jsbn-0.1.1.tgz"; - sha1 = "a5e654c2e5a2deb5f201d96cefbca80c0ef2f513"; + sha512 = "UVU9dibq2JcFWxQPA6KCqj5O42VOmAY3zQUfEKxU0KpTGXwNoCjkX1e13eHNvw/xPynt6pU0rZ1htjWTNTSXsg=="; }; }; - "json-10.0.0" = { + "json-11.0.0" = { name = "json"; packageName = "json"; - version = "10.0.0"; + version = "11.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/json/-/json-10.0.0.tgz"; - sha512 = "iK7tAZtpoghibjdB1ncCWykeBMmke3JThUe+rnkD4qkZaglOIQ70Pw7r5UJ4lyUT+7gnw7ehmmLUHDuhqzQD+g=="; + url = "https://registry.npmjs.org/json/-/json-11.0.0.tgz"; + sha512 = "N/ITv3Yw9Za8cGxuQqSqrq6RHnlaHWZkAFavcfpH/R52522c26EbihMxnY7A1chxfXJ4d+cEFIsyTgfi9GihrA=="; }; }; "json-schema-0.4.0" = { @@ -3277,7 +3178,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/json-stable-stringify-without-jsonify/-/json-stable-stringify-without-jsonify-1.0.1.tgz"; - sha1 = "9db7b59496ad3f3cfef30a75142d2d930ad72651"; + sha512 = "Bdboy+l7tA3OGW6FjyFHWkP5LuByj1Tk33Ljyq0axyzdk9//JSi2u3fP1QSmd1KNwq6VOKYGlAu87CisVir6Pw=="; }; }; "json-stringify-safe-5.0.1" = { @@ -3286,7 +3187,7 @@ let version = "5.0.1"; src = fetchurl { url = "https://registry.npmjs.org/json-stringify-safe/-/json-stringify-safe-5.0.1.tgz"; - sha1 = "1296a2d58fd45f19a0f6ce01d65701e2c735b6eb"; + sha512 = "ZClg6AaYvamvYEE82d3Iyd3vSSIjQ+odgjaTzRuO3s7toCdFKczob2i0zCh7JE8kWn17yvAWhUVxvqGwUalsRA=="; }; }; "jsonfile-4.0.0" = { @@ -3295,7 +3196,7 @@ let version = "4.0.0"; src = fetchurl { url = "https://registry.npmjs.org/jsonfile/-/jsonfile-4.0.0.tgz"; - sha1 = "8771aae0799b64076b76640fca058f9c10e33ecb"; + sha512 = "m6F1R3z8jjlf2imQHS2Qez5sjKWQzbuuhuJ/FKYFRZvPE3PuHcSMVZzfsLhGVOkfd20obL5SWEBew5ShlquNxg=="; }; }; "jsprim-1.4.2" = { @@ -3307,13 +3208,13 @@ let sha512 = "P2bSOMAc/ciLz6DzgjVlGJP9+BrJWu5UDGK70C2iweC5QBIeFf0ZXRvGjEj2uYgrY2MkAAhsSWHDWlFtEroZWw=="; }; }; - "jszip-3.10.0" = { + "jszip-3.10.1" = { name = "jszip"; packageName = "jszip"; - version = "3.10.0"; + version = "3.10.1"; src = fetchurl { - url = "https://registry.npmjs.org/jszip/-/jszip-3.10.0.tgz"; - sha512 = "LDfVtOLtOxb9RXkYOwPyNBTQDL4eUbqahtoY6x07GiDJHwSYvn8sHHIw8wINImV3MqbMNve2gSuM1DDqEKk09Q=="; + url = "https://registry.npmjs.org/jszip/-/jszip-3.10.1.tgz"; + sha512 = "xXDvecyTpGLrqFrvkrUSoxxfJI5AH7U8zxxtVclpsUtMCq4JQ290LY8AW5c7Ggnr/Y/oK+bQMbqK2qmtk3pN4g=="; }; }; "just-debounce-1.1.0" = { @@ -3331,7 +3232,7 @@ let version = "3.2.2"; src = fetchurl { url = "https://registry.npmjs.org/kind-of/-/kind-of-3.2.2.tgz"; - sha1 = "31ea21a734bab9bbb0f32466d893aea51e4a3c64"; + sha512 = "NOW9QQXMoZGg/oqnVNoNTTIFEIid1627WCffUBJEdMxYApq7mNE7CpzucIPc+ZQg25Phej7IJSmX3hO+oblOtQ=="; }; }; "kind-of-4.0.0" = { @@ -3340,7 +3241,7 @@ let version = "4.0.0"; src = fetchurl { url = "https://registry.npmjs.org/kind-of/-/kind-of-4.0.0.tgz"; - sha1 = "20813df3d712928b207378691a45066fae72dd57"; + sha512 = "24XsCxmEbRwEDbz/qz3stgin8TTzZ1ESR56OMCN0ujYg+vRutNSiOj9bHH9u85DKgXguraugV5sFuvbD4FW/hw=="; }; }; "kind-of-5.1.0" = { @@ -3367,7 +3268,7 @@ let version = "1.1.1"; src = fetchurl { url = "https://registry.npmjs.org/last-run/-/last-run-1.1.1.tgz"; - sha1 = "45b96942c17b1c79c772198259ba943bebf8ca5b"; + sha512 = "U/VxvpX4N/rFvPzr3qG5EtLKEnNI0emvIQB3/ecEwv+8GHaUKbIB8vxv1Oai5FAF0d0r7LXHhLLe5K/yChm5GQ=="; }; }; "lazystream-1.0.1" = { @@ -3385,7 +3286,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/lcid/-/lcid-1.0.0.tgz"; - sha1 = "308accafa0bc483a3867b4b6f2b9506251d1b835"; + sha512 = "YiGkH6EnGrDGqLMITnGjXtGmNtjoXw9SVUzcaos8RBi7Ps0VBylkq+vOcY9QE5poLasPCR849ucFUkl0UzUyOw=="; }; }; "lead-1.0.0" = { @@ -3394,16 +3295,16 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/lead/-/lead-1.0.0.tgz"; - sha1 = "6f14f99a37be3a9dd784f5495690e5903466ee42"; + sha512 = "IpSVCk9AYvLHo5ctcIXxOBpMWUe+4TKN3VPWAKUbJikkmsGp0VrSM8IttVc32D6J4WUsiPE6aEFRNmIoF/gdow=="; }; }; - "levn-0.3.0" = { + "levn-0.4.1" = { name = "levn"; packageName = "levn"; - version = "0.3.0"; + version = "0.4.1"; src = fetchurl { - url = "https://registry.npmjs.org/levn/-/levn-0.3.0.tgz"; - sha1 = "3b09924edf9f083c0490fdd4c0bc4421e04764ee"; + url = "https://registry.npmjs.org/levn/-/levn-0.4.1.tgz"; + sha512 = "+bT2uH4E5LGE7h/n3evcS/sQlJXCpIp6ym8OWJ5eV6+67Dsql/LaaT7qJBAt2rzfoa/5QBGBhxDix1dMt2kQKQ=="; }; }; "lie-3.3.0" = { @@ -3430,7 +3331,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/load-json-file/-/load-json-file-1.1.0.tgz"; - sha1 = "956905708d58b4bab4c2261b04f59f31c99374c0"; + sha512 = "cy7ZdNRXdablkXYNI049pthVeXFurRyb9+hA/dZzerZ0pGTx42z+y+ssxBaVV2l70t1muq5IdKhn4UtcoGUY9A=="; }; }; "locate-path-6.0.0" = { @@ -3442,31 +3343,31 @@ let sha512 = "iPZK6eYjbxRu3uB4/WZ3EsEIMJFMqAoopl3R+zuq0UjcAm/MO6KCweDgPfP3elTztoKP3KtnVHxTn2NHBSDVUw=="; }; }; - "lodash-4.17.21" = { - name = "lodash"; - packageName = "lodash"; - version = "4.17.21"; + "lodash.merge-4.6.2" = { + name = "lodash.merge"; + packageName = "lodash.merge"; + version = "4.6.2"; src = fetchurl { - url = "https://registry.npmjs.org/lodash/-/lodash-4.17.21.tgz"; - sha512 = "v2kDEe57lecTulaDIuNTPy3Ry4gLGJ6Z1O3vE1krgXZNrsQ+LFTGHVxVjcXPs17LhbZVGedAJv8XZ1tvj5FvSg=="; + url = "https://registry.npmjs.org/lodash.merge/-/lodash.merge-4.6.2.tgz"; + sha512 = "0KpjqXRVvrYyCsX1swR/XTK0va6VQkQM6MNo7PqW77ByjAhoARA8EfrP1N4+KlKj8YS0ZUCtRT/YUuhyYDujIQ=="; }; }; - "log-symbols-4.0.0" = { + "log-symbols-4.1.0" = { name = "log-symbols"; packageName = "log-symbols"; - version = "4.0.0"; + version = "4.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/log-symbols/-/log-symbols-4.0.0.tgz"; - sha512 = "FN8JBzLx6CzeMrB0tg6pqlGU1wCrXW+ZXGH481kfsBqer0hToTIiHdjH4Mq8xJUbvATujKCvaREGWpGUionraA=="; + url = "https://registry.npmjs.org/log-symbols/-/log-symbols-4.1.0.tgz"; + sha512 = "8XPvpAA8uyhfteu8pIvQxpJZ7SYYdpUivZpGy6sFsBuKRY/7rQGavedeB8aK+Zkyq6upMFVL/9AW6vOYzfRyLg=="; }; }; - "loupe-2.3.4" = { + "loupe-2.3.6" = { name = "loupe"; packageName = "loupe"; - version = "2.3.4"; + version = "2.3.6"; src = fetchurl { - url = "https://registry.npmjs.org/loupe/-/loupe-2.3.4.tgz"; - sha512 = "OvKfgCC2Ndby6aSTREl5aCCPTNIzlDfQZvZxNUrBrihDhL3xcrYegTblhmEiCrg2kKQz4XsFIaemE5BF4ybSaQ=="; + url = "https://registry.npmjs.org/loupe/-/loupe-2.3.6.tgz"; + sha512 = "RaPMZKiMy8/JruncMU5Bt6na1eftNoo++R4Y+N2FrxkDVTrGvcyzFTsaGif4QTeKESheMGegbhw6iUAq+5A8zA=="; }; }; "lowercase-keys-1.0.1" = { @@ -3484,7 +3385,7 @@ let version = "0.1.0"; src = fetchurl { url = "https://registry.npmjs.org/lru-queue/-/lru-queue-0.1.0.tgz"; - sha1 = "2738bd9f0d3cf4f84490c5736c48699ac632cda3"; + sha512 = "BpdYkt9EvGl8OfWHDQPISVpcl5xZthb+XPsbELj5AQXxIC8IriDZIQYjBJPEm5rS420sjZ0TLEzRcq5KdBhYrQ=="; }; }; "make-dir-1.3.0" = { @@ -3511,7 +3412,7 @@ let version = "0.2.2"; src = fetchurl { url = "https://registry.npmjs.org/map-cache/-/map-cache-0.2.2.tgz"; - sha1 = "c32abd0bd6525d9b051645bb4f26ac5dc98a0dbf"; + sha512 = "8y/eV9QQZCiyn1SprXSrCmqJN0yNRATe+PO8ztwqrvrbdRLA3eYJF0yaR0YayLWkMbsQSKWS9N2gPcGEc4UsZg=="; }; }; "map-visit-1.0.0" = { @@ -3520,7 +3421,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/map-visit/-/map-visit-1.0.0.tgz"; - sha1 = "ecdca8f13144e660f1b5bd41f12f3479d98dfb8f"; + sha512 = "4y7uGv8bd2WdM9vpQsiQNo41Ln1NvhvDRuVt0k2JZQ+ezN2uaQes7lZeZ+QQUHOLQAtDaBJ+7wCbi+ab/KFs+w=="; }; }; "matchdep-2.0.0" = { @@ -3529,7 +3430,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/matchdep/-/matchdep-2.0.0.tgz"; - sha1 = "c6f34834a0d8dbc3b37c27ee8bbcb27c7775582e"; + sha512 = "LFgVbaHIHMqCRuCZyfCtUOq9/Lnzhi7Z0KFUE2fhD54+JN2jLh3hC02RLkqauJ3U4soU6H1J3tfj/Byk7GoEjA=="; }; }; "math-random-1.0.4" = { @@ -3565,7 +3466,7 @@ let version = "2.3.11"; src = fetchurl { url = "https://registry.npmjs.org/micromatch/-/micromatch-2.3.11.tgz"; - sha1 = "86677c97d1720b363431d04d0d15293bd38c1565"; + sha512 = "LnU2XFEk9xxSJ6rfgAry/ty5qwUTyHYOBU0g4R6tIw5ljwgGIBmiKhRWLw5NpMOnrgUNcDJ4WMp8rl3sYVHLNA=="; }; }; "micromatch-3.1.10" = { @@ -3595,40 +3496,40 @@ let sha512 = "ZDY+bPm5zTTF+YpCrAU9nK0UgICYPT0QtT1NZWFv4s++TNkcgVaT0g6+4R2uI4MjQjzysHB1zxuWL50hzaeXiw=="; }; }; - "mimic-fn-2.1.0" = { - name = "mimic-fn"; - packageName = "mimic-fn"; - version = "2.1.0"; + "minimatch-3.1.2" = { + name = "minimatch"; + packageName = "minimatch"; + version = "3.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/mimic-fn/-/mimic-fn-2.1.0.tgz"; - sha512 = "OqbOk5oEQeAZ8WXWydlu9HJjz9WVdEIvamMCcXmuqUYjTknH/sqsWvhQ3vgwKFRR1HpjvNBKQ37nbJgYzGqGcg=="; + url = "https://registry.npmjs.org/minimatch/-/minimatch-3.1.2.tgz"; + sha512 = "J7p63hRiAjw1NDEww1W7i37+ByIrOWO5XQQAzZ3VOcL0PNybwpfmV/N05zFAzwQ9USyEcX6t3UO+K5aqBQOIHw=="; }; }; - "minimatch-3.0.4" = { + "minimatch-5.0.1" = { name = "minimatch"; packageName = "minimatch"; - version = "3.0.4"; + version = "5.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/minimatch/-/minimatch-3.0.4.tgz"; - sha512 = "yJHVQEhyqPLUTgt9B83PXu6W3rx4MvvHvSUvToogpwoGDOUQ+yDrR0HRot+yOCdCO7u4hX3pWft6kWBBcqh0UA=="; + url = "https://registry.npmjs.org/minimatch/-/minimatch-5.0.1.tgz"; + sha512 = "nLDxIFRyhDblz3qMuq+SoRZED4+miJ/G+tdDrjkkkRnjAsBexeGpgjLEQ0blJy7rHhR2b93rhQY4SvyWu9v03g=="; }; }; - "minimatch-3.1.2" = { + "minimatch-5.1.6" = { name = "minimatch"; packageName = "minimatch"; - version = "3.1.2"; + version = "5.1.6"; src = fetchurl { - url = "https://registry.npmjs.org/minimatch/-/minimatch-3.1.2.tgz"; - sha512 = "J7p63hRiAjw1NDEww1W7i37+ByIrOWO5XQQAzZ3VOcL0PNybwpfmV/N05zFAzwQ9USyEcX6t3UO+K5aqBQOIHw=="; + url = "https://registry.npmjs.org/minimatch/-/minimatch-5.1.6.tgz"; + sha512 = "lKwV/1brpG6mBUFHtb7NUmtABCb2WZZmm2wNiOA5hAb8VdCS4B3dtMWyvcoViccwAW/COERjXLt0zP1zXUN26g=="; }; }; - "minimist-1.2.6" = { + "minimist-1.2.8" = { name = "minimist"; packageName = "minimist"; - version = "1.2.6"; + version = "1.2.8"; src = fetchurl { - url = "https://registry.npmjs.org/minimist/-/minimist-1.2.6.tgz"; - sha512 = "Jsjnk4bw3YJqYzbdyBiNsPWHPfO++UGG749Cxs6peCu5Xg4nrena6OVxOYxrQTqww0Jmwt+Ref8rggumkTLz9Q=="; + url = "https://registry.npmjs.org/minimist/-/minimist-1.2.8.tgz"; + sha512 = "2yyAR8qBkN3YuheJanUpWC5U3bb5osDywNB8RzDVlDwDHbocAJveqqj1u8+SVD7jkWT4yvsHCpWqqWqAxb0zCA=="; }; }; "mixin-deep-1.3.2" = { @@ -3655,16 +3556,16 @@ let version = "0.1.0"; src = fetchurl { url = "https://registry.npmjs.org/mkpath/-/mkpath-0.1.0.tgz"; - sha1 = "7554a6f8d871834cc97b5462b122c4c124d6de91"; + sha512 = "bauHShmaxVQiEvlrAPWxSPn8spSL8gDVRl11r8vLT4r/KdnknLqtqwQbToZ2Oa8sJkExYY1z6/d+X7pNiqo4yg=="; }; }; - "mocha-8.4.0" = { + "mocha-10.2.0" = { name = "mocha"; packageName = "mocha"; - version = "8.4.0"; + version = "10.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/mocha/-/mocha-8.4.0.tgz"; - sha512 = "hJaO0mwDXmZS4ghXsvPVriOhsxQ7ofcpQdm8dE+jISUOKopitvnXFQmpRR7jd2K6VBG6E26gU3IAbXXGIbu4sQ=="; + url = "https://registry.npmjs.org/mocha/-/mocha-10.2.0.tgz"; + sha512 = "IDY7fl/BecMwFHzoqF2sg/SHHANeBoMMXFlS9r0OXKDssYE1M5O43wUY/9BVPeIvfH2zmEbBfseqN9gBQZzXkg=="; }; }; "ms-2.0.0" = { @@ -3673,7 +3574,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/ms/-/ms-2.0.0.tgz"; - sha1 = "5608aeadfc00be6c2901df5f9861788de0d597c8"; + sha512 = "Tpp60P6IUJDTuOq/5Z8cdskzJujfwqfOTkrwIwj7IRISpnkJnT6SyJ4PCPnGMoFjC9ddhal5KVIYtAt97ix05A=="; }; }; "ms-2.1.2" = { @@ -3703,31 +3604,22 @@ let sha512 = "kDcwXR4PS7caBpuRYYBUz9iVixUk3anO3f5OYFiIPwK/20vCzKCHyKoulbiDY1S53zD2bxUpxN/IJ+TnXjfvxg=="; }; }; - "mute-stream-0.0.8" = { - name = "mute-stream"; - packageName = "mute-stream"; - version = "0.0.8"; - src = fetchurl { - url = "https://registry.npmjs.org/mute-stream/-/mute-stream-0.0.8.tgz"; - sha512 = "nnbWWOkoWyUsTjKrhgD0dcz22mdkSnpYqbEjIm2nhwhuxlSkpywJmBo8h0ZqJdkp73mb90SssHkN4rsRaBAfAA=="; - }; - }; - "nan-2.15.0" = { + "nan-2.17.0" = { name = "nan"; packageName = "nan"; - version = "2.15.0"; + version = "2.17.0"; src = fetchurl { - url = "https://registry.npmjs.org/nan/-/nan-2.15.0.tgz"; - sha512 = "8ZtvEnA2c5aYCZYd1cvgdnU6cqwixRoYg70xPLWUws5ORTa/lnw+u4amixRS/Ac5U5mQVgp9pnlSUnbNWFaWZQ=="; + url = "https://registry.npmjs.org/nan/-/nan-2.17.0.tgz"; + sha512 = "2ZTgtl0nJsO0KQCjEpxcIr5D+Yv90plTitZt9JBfQvVJDS5seMl3FOvsh3+9CoYWXf/1l5OaZzzF6nDm4cagaQ=="; }; }; - "nanoid-3.1.20" = { + "nanoid-3.3.3" = { name = "nanoid"; packageName = "nanoid"; - version = "3.1.20"; + version = "3.3.3"; src = fetchurl { - url = "https://registry.npmjs.org/nanoid/-/nanoid-3.1.20.tgz"; - sha512 = "a1cQNyczgKbLX9jwbS/+d7W8fX/RfgYR7lVWwWOGIPNgK2m0MWvrGF6/m4kk6U3QcFMnZf3RIhL0v2Jgh/0Uxw=="; + url = "https://registry.npmjs.org/nanoid/-/nanoid-3.3.3.tgz"; + sha512 = "p1sjXuopFs0xg+fPASzQ28agW1oHD7xDsd9Xkf3T15H3c/cifrFHVwrh74PdoklAPi+i7MdRsE47vm2r6JoB+w=="; }; }; "nanomatch-1.2.13" = { @@ -3745,7 +3637,7 @@ let version = "1.4.0"; src = fetchurl { url = "https://registry.npmjs.org/natural-compare/-/natural-compare-1.4.0.tgz"; - sha1 = "4abebfeed7541f2c27acfb29bdbbd15c8d5ba4f7"; + sha512 = "OWND8ei3VtNC9h7V60qff3SVobHr996CTwgxubgyQYEpg290h9J0buyECNNJexkFm5sOajh5G116RYA1c8ZMSw=="; }; }; "next-tick-1.1.0" = { @@ -3757,13 +3649,13 @@ let sha512 = "CXdUiJembsNjuToQvxayPZF9Vqht7hewsvy2sOWafLvi2awflj9mOC6bHIg50orX8IJvWKY9wYQ/zB2kogPslQ=="; }; }; - "nice-try-1.0.5" = { - name = "nice-try"; - packageName = "nice-try"; - version = "1.0.5"; + "node-gyp-build-4.6.0" = { + name = "node-gyp-build"; + packageName = "node-gyp-build"; + version = "4.6.0"; src = fetchurl { - url = "https://registry.npmjs.org/nice-try/-/nice-try-1.0.5.tgz"; - sha512 = "1nh45deeb5olNY7eX82BkPO7SSxR5SSYJiPTrTdFUVYwAl8CKMA5N9PjTYkHiRjisVcxcQ1HXdLhx2qxxJzLNQ=="; + url = "https://registry.npmjs.org/node-gyp-build/-/node-gyp-build-4.6.0.tgz"; + sha512 = "NTZVKn9IylLwUzaKjkas1e4u2DLNcV4rdYagA4PWdPwW87Bi7z+BznyKSRwS/761tV/lzCGXplWsiaMjLqP2zQ=="; }; }; "nopt-1.0.10" = { @@ -3772,7 +3664,7 @@ let version = "1.0.10"; src = fetchurl { url = "https://registry.npmjs.org/nopt/-/nopt-1.0.10.tgz"; - sha1 = "6ddd21bd2a31417b92727dd585f8a6f37608ebee"; + sha512 = "NWmpvLSqUrgrAC9HCuxEvb+PSloHpqVu+FqcO4eeF2h5qYRhA7ev6KvelyQAKtegUbC6RypJnlEOhd8vloNKYg=="; }; }; "nopt-3.0.6" = { @@ -3781,7 +3673,7 @@ let version = "3.0.6"; src = fetchurl { url = "https://registry.npmjs.org/nopt/-/nopt-3.0.6.tgz"; - sha1 = "c6465dbf08abcd4db359317f79ac68a646b28ff9"; + sha512 = "4GUt3kSEYmk4ITxzB/b9vaIDfUVWN/Ml1Fwl11IlnIG2iaJ9O6WXZ9SrYM9NLI8OCBieN2Y8SWC2oJV0RQ7qYg=="; }; }; "normalize-package-data-2.5.0" = { @@ -3799,7 +3691,7 @@ let version = "2.1.1"; src = fetchurl { url = "https://registry.npmjs.org/normalize-path/-/normalize-path-2.1.1.tgz"; - sha1 = "1ab28b556e198363a8c1a6f7e6fa20137fe6aed9"; + sha512 = "3pKJwH184Xo/lnH6oyP1q2pMd7HcypqqmRs91/6/i2CGtWwIKGCkOOMTm/zXbgTEWHw1uNpNi/igc3ePOYHb6w=="; }; }; "normalize-path-3.0.0" = { @@ -3835,16 +3727,16 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/number-is-nan/-/number-is-nan-1.0.1.tgz"; - sha1 = "097b602b53422a522c1afb8790318336941a011d"; + sha512 = "4jbtZXNAsfZbAHiiqjLPBiCl16dES1zI4Hpzzxw61Tk+loF+sBDBKx1ICKKKwIqQ7M0mFn1TmkN7euSncWgHiQ=="; }; }; - "nw-0.55.0" = { + "nw-0.71.1" = { name = "nw"; packageName = "nw"; - version = "0.55.0"; + version = "0.71.1"; src = fetchurl { - url = "https://registry.npmjs.org/nw/-/nw-0.55.0.tgz"; - sha512 = "/EYsT55LJraJCZeSCpJoXnftsLtR+8lbhEXABlhye/n+0//F+v9kYsGLbnC+SS3JN7NQksnv/WcnoLVjL1WXcg=="; + url = "https://registry.npmjs.org/nw/-/nw-0.71.1.tgz"; + sha512 = "EQVv20UEY8JHC36iKyJPb9q19mmeKcezT5MnaIUjRhsgMcnZztXz9+Uaj2nOTLB3ZGq4EF/7rYSiZ0wU+Prspg=="; }; }; "nw-autoupdater-1.1.11" = { @@ -3862,7 +3754,7 @@ let version = "3.0.1"; src = fetchurl { url = "https://registry.npmjs.org/nw-dev/-/nw-dev-3.0.1.tgz"; - sha1 = "fcae540cd00cb1f225808c2ebd96842df0b780d2"; + sha512 = "wlabaoKfO+2ZngERU5L6e7eXf0Hi41eAD01IBvjYh7wrIUdQKe1/wfVaeSMuZ0UYeu9zmOFu2uA2wOLTdY6+pg=="; }; }; "oauth-sign-0.9.0" = { @@ -3880,7 +3772,7 @@ let version = "4.1.1"; src = fetchurl { url = "https://registry.npmjs.org/object-assign/-/object-assign-4.1.1.tgz"; - sha1 = "2109adc7965887cfc05cbbd442cac8bfbb360863"; + sha512 = "rJgTQnkUnH1sFw8yT6VSU3zD3sWmu6sZhIseY8VX+GRu3P6F7Fu+JNDoXfklElbLJSnc3FUQHVe4cU5hj+BcUg=="; }; }; "object-copy-0.1.0" = { @@ -3889,7 +3781,7 @@ let version = "0.1.0"; src = fetchurl { url = "https://registry.npmjs.org/object-copy/-/object-copy-0.1.0.tgz"; - sha1 = "7e7d858b781bd7c991a41ba975ed3812754e998c"; + sha512 = "79LYn6VAb63zgtmAteVOWo9Vdj71ZVBy3Pbse+VqxDpEP83XuujMrGqHIwAXJ5I/aM0zU7dIyIAhifVTPrNItQ=="; }; }; "object-keys-1.1.1" = { @@ -3907,16 +3799,16 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/object-visit/-/object-visit-1.0.1.tgz"; - sha1 = "f79c4493af0c5377b59fe39d395e41042dd045bb"; + sha512 = "GBaMwwAVK9qbQN3Scdo0OyvgPW7l3lnaVMj84uTOZlswkX0KpF6fyDBJhtTthf7pymztoN36/KEr1DyhF96zEA=="; }; }; - "object.assign-4.1.2" = { + "object.assign-4.1.4" = { name = "object.assign"; packageName = "object.assign"; - version = "4.1.2"; + version = "4.1.4"; src = fetchurl { - url = "https://registry.npmjs.org/object.assign/-/object.assign-4.1.2.tgz"; - sha512 = "ixT2L5THXsApyiUPYKmW+2EHpXXe5Ii3M+f4e+aJFAHao5amFRW6J0OO6c/LU8Be47utCx2GL89hxGB6XSmKuQ=="; + url = "https://registry.npmjs.org/object.assign/-/object.assign-4.1.4.tgz"; + sha512 = "1mxKf0e58bvyjSCtKYY4sRe9itRk3PJpquJOjeIkz885CczcI4IvJJDLPS72oowuSh+pBxUFROpX+TU++hxhZQ=="; }; }; "object.defaults-1.1.0" = { @@ -3925,7 +3817,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/object.defaults/-/object.defaults-1.1.0.tgz"; - sha1 = "3a7f868334b407dea06da16d88d5cd29e435fecf"; + sha512 = "c/K0mw/F11k4dEUBMW8naXUuBuhxRCfG7W+yFy8EcijU/rSmazOUd1XAEEe6bC0OuXY4HUKjTJv7xbxIMqdxrA=="; }; }; "object.map-1.0.1" = { @@ -3934,7 +3826,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/object.map/-/object.map-1.0.1.tgz"; - sha1 = "cf83e59dc8fcc0ad5f4250e1f78b3b81bd801d37"; + sha512 = "3+mAJu2PLfnSVGHwIWubpOFLscJANBKuB/6A4CxBstc4aqwQY0FWcsppuy4jU5GSB95yES5JHSI+33AWuS4k6w=="; }; }; "object.omit-2.0.1" = { @@ -3943,7 +3835,7 @@ let version = "2.0.1"; src = fetchurl { url = "https://registry.npmjs.org/object.omit/-/object.omit-2.0.1.tgz"; - sha1 = "1a9c744829f39dbb858c76ca3579ae2a54ebd1fa"; + sha512 = "UiAM5mhmIuKLsOvrL+B0U2d1hXHF3bFYWIuH1LMpuV2EJEHG1Ntz06PgLEHjm6VFd87NpH8rastvPoyv6UW2fA=="; }; }; "object.pick-1.3.0" = { @@ -3952,7 +3844,7 @@ let version = "1.3.0"; src = fetchurl { url = "https://registry.npmjs.org/object.pick/-/object.pick-1.3.0.tgz"; - sha1 = "87a10ac4c1694bd2e1cbf53591a66141fb5dd747"; + sha512 = "tqa/UMy/CCoYmj+H5qc07qvSL9dqcs/WZENZ1JbtWBlATP+iVOe778gE6MSijnyCnORzDuX6hU+LA4SZ09YjFQ=="; }; }; "object.reduce-1.0.1" = { @@ -3961,7 +3853,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/object.reduce/-/object.reduce-1.0.1.tgz"; - sha1 = "6fe348f2ac7fa0f95ca621226599096825bb03ad"; + sha512 = "naLhxxpUESbNkRqc35oQ2scZSJueHGQNUfMW/0U37IgN6tE2dgDWg3whf+NEliy3F/QysrO48XKUz/nGPe+AQw=="; }; }; "once-1.4.0" = { @@ -3970,25 +3862,16 @@ let version = "1.4.0"; src = fetchurl { url = "https://registry.npmjs.org/once/-/once-1.4.0.tgz"; - sha1 = "583b1aa775961d4b113ac17d9c50baef9dd76bd1"; + sha512 = "lNaJgI+2Q5URQBkccEKHTQOPaXdUxnZZElQTZY0MFUAuaEqe1E+Nyvgdz/aIyNi6Z9MzO5dv1H8n58/GELp3+w=="; }; }; - "onetime-5.1.2" = { - name = "onetime"; - packageName = "onetime"; - version = "5.1.2"; - src = fetchurl { - url = "https://registry.npmjs.org/onetime/-/onetime-5.1.2.tgz"; - sha512 = "kbpaSSGJTWdAY5KPVeMOKXSrPtr8C8C7wodJbcsd51jRnmD+GZu8Y0VoU6Dm5Z4vWr0Ig/1NKuWRKf7j5aaYSg=="; - }; - }; - "optionator-0.8.3" = { + "optionator-0.9.1" = { name = "optionator"; packageName = "optionator"; - version = "0.8.3"; + version = "0.9.1"; src = fetchurl { - url = "https://registry.npmjs.org/optionator/-/optionator-0.8.3.tgz"; - sha512 = "+IW9pACdk3XWmmTXG8m3upGUJst5XRGzxMRjXzAuJ1XnIFNvfhjjIuYkDvysnPQ7qzqVzLt78BCruntqRhWQbA=="; + url = "https://registry.npmjs.org/optionator/-/optionator-0.9.1.tgz"; + sha512 = "74RlY5FCnhq4jRxVUPKDaRwrVNXMqsGsiW6AJw4XK8hmtm10wC0ypZBLw5IIp85NZMr91+qd1RvvENwg7jjRFw=="; }; }; "ordered-read-streams-1.0.1" = { @@ -3997,7 +3880,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/ordered-read-streams/-/ordered-read-streams-1.0.1.tgz"; - sha1 = "77c0cb37c41525d64166d990ffad7ec6a0e1363e"; + sha512 = "Z87aSjx3r5c0ZB7bcJqIgIRX5bxR7A4aSzvIbaxd0oTkWBCOoKfuGHiKj60CHVUgg1Phm5yMZzBdt8XqRs73Mw=="; }; }; "os-locale-1.4.0" = { @@ -4006,16 +3889,7 @@ let version = "1.4.0"; src = fetchurl { url = "https://registry.npmjs.org/os-locale/-/os-locale-1.4.0.tgz"; - sha1 = "20f9f17ae29ed345e8bde583b13d2009803c14d9"; - }; - }; - "os-tmpdir-1.0.2" = { - name = "os-tmpdir"; - packageName = "os-tmpdir"; - version = "1.0.2"; - src = fetchurl { - url = "https://registry.npmjs.org/os-tmpdir/-/os-tmpdir-1.0.2.tgz"; - sha1 = "bbe67406c79aa85c5cfec766fe5734555dfa1274"; + sha512 = "PRT7ZORmwu2MEFt4/fv3Q+mEfN4zetKxufQrkShY2oGvUms9r8otu5HfdyIFHkYXjO7laNsoVGmM2MANfuTA8g=="; }; }; "p-limit-3.1.0" = { @@ -4060,7 +3934,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/parse-filepath/-/parse-filepath-1.0.2.tgz"; - sha1 = "a632127f53aaf3d15876f5872f3ffac763d6c891"; + sha512 = "FwdRXKCohSVeXqwtYonZTXtbGJKrn+HNyWDYVcp5yuJlesTwNH4rsmRZ+GrKAPJ5bLpRxESMeS+Rl0VCHRvB2Q=="; }; }; "parse-glob-3.0.4" = { @@ -4069,7 +3943,7 @@ let version = "3.0.4"; src = fetchurl { url = "https://registry.npmjs.org/parse-glob/-/parse-glob-3.0.4.tgz"; - sha1 = "b2c376cfb11f35513badd173ef0bb6e3a388391c"; + sha512 = "FC5TeK0AwXzq3tUBFtH74naWkPQCEWs4K+xMxWZBlKDWu0bVHXGZa+KKqxKidd7xwhdZ19ZNuF2uO1M/r196HA=="; }; }; "parse-json-2.2.0" = { @@ -4078,7 +3952,7 @@ let version = "2.2.0"; src = fetchurl { url = "https://registry.npmjs.org/parse-json/-/parse-json-2.2.0.tgz"; - sha1 = "f480f40434ef80741f8469099f8dea18f55a4dc9"; + sha512 = "QR/GGaKCkhwk1ePQNYDRKYZ3mwU9ypsKhB0XyFnLQdomyEqk3e8wpW3V5Jp88zbxK4n5ST1nqo+g9juTpownhQ=="; }; }; "parse-node-version-1.0.1" = { @@ -4096,7 +3970,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/parse-passwd/-/parse-passwd-1.0.0.tgz"; - sha1 = "6d5b934a456993b23d37f40a382d6f1666a8e5c6"; + sha512 = "1Y1A//QUXEZK7YKz+rD9WydcE1+EuPr6ZBgKecAB8tmoW6UFv0NREVJe1p+jRxtThkcbbKkfwIbWJe/IeE6m2Q=="; }; }; "pascalcase-0.1.1" = { @@ -4105,7 +3979,7 @@ let version = "0.1.1"; src = fetchurl { url = "https://registry.npmjs.org/pascalcase/-/pascalcase-0.1.1.tgz"; - sha1 = "b363e55e8006ca6fe21784d2db22bd15d7917f14"; + sha512 = "XHXfu/yOQRy9vYOtUDVMN60OEJjW013GoObG1o+xwQTpB9eYJX/BjXMsdW13ZDPruFhYYn0AG22w0xgQMwl3Nw=="; }; }; "path-dirname-1.0.2" = { @@ -4114,7 +3988,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/path-dirname/-/path-dirname-1.0.2.tgz"; - sha1 = "cc33d24d525e099a5388c0336c6e32b9160609e0"; + sha512 = "ALzNPpyNq9AqXMBjeymIjFDAkAFH06mHJH/cSBHAgU0s4vfpBn6b2nf8tiRLvagKD8RbTpq2FKTBg7cl9l3c7Q=="; }; }; "path-exists-2.1.0" = { @@ -4123,7 +3997,7 @@ let version = "2.1.0"; src = fetchurl { url = "https://registry.npmjs.org/path-exists/-/path-exists-2.1.0.tgz"; - sha1 = "0feb6c64f0fc518d9a754dd5efb62c7022761f4b"; + sha512 = "yTltuKuhtNeFJKa1PiRzfLAU5182q1y4Eb4XCJ3PBqyzEDkAZRzBrKKBct682ls9reBVHf9udYLN5Nd+K1B9BQ=="; }; }; "path-exists-4.0.0" = { @@ -4141,16 +4015,16 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/path-is-absolute/-/path-is-absolute-1.0.1.tgz"; - sha1 = "174b9268735534ffbc7ace6bf53a5a9e1b5c5f5f"; + sha512 = "AVbw3UJ2e9bq64vSaS9Am0fje1Pa8pbGqTTsmXfaIiMpnr5DlDhfJOuLj9Sf95ZPVDAUerDfEk88MPmPe7UCQg=="; }; }; - "path-key-2.0.1" = { + "path-key-3.1.1" = { name = "path-key"; packageName = "path-key"; - version = "2.0.1"; + version = "3.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/path-key/-/path-key-2.0.1.tgz"; - sha1 = "411cadb574c5a140d3a4b1910d40d80cc9f40b40"; + url = "https://registry.npmjs.org/path-key/-/path-key-3.1.1.tgz"; + sha512 = "ojmeN0qd+y0jszEtoY48r0Peq5dwMEkIlCOu6Q5f41lfkswXuKtYrhgoTpLnyIcHm24Uhqx+5Tqm2InSwLhE6Q=="; }; }; "path-parse-1.0.7" = { @@ -4168,7 +4042,7 @@ let version = "0.1.1"; src = fetchurl { url = "https://registry.npmjs.org/path-root/-/path-root-0.1.1.tgz"; - sha1 = "9a4a6814cac1c0cd73360a95f32083c8ea4745b7"; + sha512 = "QLcPegTHF11axjfojBIoDygmS2E3Lf+8+jI6wOVmNVenrKSo3mFdSGiIgdSHenczw3wPtlVMQaFVwGmM7BJdtg=="; }; }; "path-root-regex-0.1.2" = { @@ -4177,7 +4051,7 @@ let version = "0.1.2"; src = fetchurl { url = "https://registry.npmjs.org/path-root-regex/-/path-root-regex-0.1.2.tgz"; - sha1 = "bfccdc8df5b12dc52c8b43ec38d18d72c04ba96d"; + sha512 = "4GlJ6rZDhQZFE0DPVKh0e9jmZ5egZfxTkp7bcRDuPlJXbAwhxcl2dINPUAsjLdejqaLsCeg8axcLjIbvBjN4pQ=="; }; }; "path-type-1.1.0" = { @@ -4186,7 +4060,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/path-type/-/path-type-1.1.0.tgz"; - sha1 = "59c44f7ee491da704da415da5a4070ba4f8fe441"; + sha512 = "S4eENJz1pkiQn9Znv33Q+deTOKmbl+jj1Fl+qiP/vYezj+S8x+J3Uo0ISrx/QoEvIlOaDWJhPaRd1flJ9HXZqg=="; }; }; "pathval-1.1.1" = { @@ -4204,7 +4078,7 @@ let version = "1.2.0"; src = fetchurl { url = "https://registry.npmjs.org/pend/-/pend-1.2.0.tgz"; - sha1 = "7a57eb550a6783f9115331fcf4663d5c8e007a50"; + sha512 = "F3asv42UuXchdzt+xXqfW1OGlVBe+mxa2mqI0pg5yAHZPvFmY3Y6drSf/GQ1A86WgWEN9Kzh/WrgKa6iGcHXLg=="; }; }; "performance-now-2.1.0" = { @@ -4213,7 +4087,16 @@ let version = "2.1.0"; src = fetchurl { url = "https://registry.npmjs.org/performance-now/-/performance-now-2.1.0.tgz"; - sha1 = "6309f4e0e5fa913ec1c69307ae364b4b377c9e7b"; + sha512 = "7EAHlyLHI56VEIdK57uwHdHKIaAGbnXPiw0yWbarQZOKaKpvUIgW0jWRVLiatnM+XXlSwsanIBH/hzGMJulMow=="; + }; + }; + "picocolors-0.2.1" = { + name = "picocolors"; + packageName = "picocolors"; + version = "0.2.1"; + src = fetchurl { + url = "https://registry.npmjs.org/picocolors/-/picocolors-0.2.1.tgz"; + sha512 = "cMlDqaLEqfSaW8Z7N5Jw+lyIW869EzT73/F5lhtY9cLGoVxSXznfgfXMO0Z5K0o0Q2TkTXq+0KFsdnSe3jDViA=="; }; }; "picomatch-2.3.1" = { @@ -4231,7 +4114,7 @@ let version = "2.3.0"; src = fetchurl { url = "https://registry.npmjs.org/pify/-/pify-2.3.0.tgz"; - sha1 = "ed141a6ac043a849ea588498e7dca8b15330e90c"; + sha512 = "udgsAY+fTnvv7kI7aaxbqwWNb0AHiB0qBO89PZKPkoTmGOgdbrHDKD+0B2X4uTfJ/FT1R09r9gTsjUjNJotuog=="; }; }; "pify-3.0.0" = { @@ -4240,7 +4123,7 @@ let version = "3.0.0"; src = fetchurl { url = "https://registry.npmjs.org/pify/-/pify-3.0.0.tgz"; - sha1 = "e5a4acd2c101fdf3d9a4d07f0dbc4db49dd28176"; + sha512 = "C3FsVNH1udSEX48gGX1xfvwTWfsYWj5U+8/uK15BGzIGrKoUpghX8hWZwa/OFnakBiiVNmBvemTJR5mcy7iPcg=="; }; }; "pinkie-2.0.4" = { @@ -4249,7 +4132,7 @@ let version = "2.0.4"; src = fetchurl { url = "https://registry.npmjs.org/pinkie/-/pinkie-2.0.4.tgz"; - sha1 = "72556b80cfa0d48a974e80e77248e80ed4f7f870"; + sha512 = "MnUuEycAemtSaeFSjXKW/aroV7akBbY+Sv+RkyqFjgAe73F+MR0TBWKBRDkmfWq/HiFmdavfZ1G7h4SPZXaCSg=="; }; }; "pinkie-promise-2.0.1" = { @@ -4258,7 +4141,7 @@ let version = "2.0.1"; src = fetchurl { url = "https://registry.npmjs.org/pinkie-promise/-/pinkie-promise-2.0.1.tgz"; - sha1 = "2135d6dfa7a358c069ac9b178776288228450ffa"; + sha512 = "0Gni6D4UcLTbv9c57DfxDGdr41XfgUjqWZu492f0cIGr16zDU06BWP/RAEvOuo7CQ0CNjHaLlM59YJJFm3NWlw=="; }; }; "posix-character-classes-0.1.1" = { @@ -4267,16 +4150,25 @@ let version = "0.1.1"; src = fetchurl { url = "https://registry.npmjs.org/posix-character-classes/-/posix-character-classes-0.1.1.tgz"; - sha1 = "01eac0fe3b5af71a2a6c02feabb8c1fef7e00eab"; + sha512 = "xTgYBc3fuo7Yt7JbiuFxSYGToMoz8fLoE6TC9Wx1P/u+LfeThMOAqmuyECnlBaaJb+u1m9hHiXUEtwW4OzfUJg=="; + }; + }; + "postcss-7.0.39" = { + name = "postcss"; + packageName = "postcss"; + version = "7.0.39"; + src = fetchurl { + url = "https://registry.npmjs.org/postcss/-/postcss-7.0.39.tgz"; + sha512 = "yioayjNbHn6z1/Bywyb2Y4s3yvDAeXGOyxqD+LnVOinq6Mdmd++SW2wUNVzavyyHxd6+DxzWGIuosg6P1Rj8uA=="; }; }; - "prelude-ls-1.1.2" = { + "prelude-ls-1.2.1" = { name = "prelude-ls"; packageName = "prelude-ls"; - version = "1.1.2"; + version = "1.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/prelude-ls/-/prelude-ls-1.1.2.tgz"; - sha1 = "21932a549f5e52ffd9a827f570e04be62a97da54"; + url = "https://registry.npmjs.org/prelude-ls/-/prelude-ls-1.2.1.tgz"; + sha512 = "vkcDPrRZo1QZLbn5RLGPpg/WmIQ65qoWWhcGKf/b5eplkkarX0m9z8ppCat4mlOqUsWpyNuYgO3VRyrYHSzX5g=="; }; }; "prepend-http-1.0.4" = { @@ -4285,7 +4177,7 @@ let version = "1.0.4"; src = fetchurl { url = "https://registry.npmjs.org/prepend-http/-/prepend-http-1.0.4.tgz"; - sha1 = "d4f4562b0ce3696e41ac52d0e002e57a635dc6dc"; + sha512 = "PhmXi5XmoyKw1Un4E+opM2KcsJInDvKyuOumcjjw3waw86ZNjHwVUOOWLc4bCzLdcKNaWBH9e99sbWzDQsVaYg=="; }; }; "preserve-0.2.0" = { @@ -4294,7 +4186,7 @@ let version = "0.2.0"; src = fetchurl { url = "https://registry.npmjs.org/preserve/-/preserve-0.2.0.tgz"; - sha1 = "815ed1f6ebc65926f865b310c0713bcb3315ce4b"; + sha512 = "s/46sYeylUfHNjI+sA/78FAHlmIuKqI9wNnzEOGehAlUUYeObv5C2mOinXBjyUyWmJ2SfcS2/ydApH4hTF4WXQ=="; }; }; "pretty-hrtime-1.0.3" = { @@ -4303,7 +4195,7 @@ let version = "1.0.3"; src = fetchurl { url = "https://registry.npmjs.org/pretty-hrtime/-/pretty-hrtime-1.0.3.tgz"; - sha1 = "b7e3ea42435a4c9b2759d99e0f201eb195802ee1"; + sha512 = "66hKPCr+72mlfiSjlEB1+45IjXSqvVAIy6mocupoww4tBFE9R9IhwwUGoI4G++Tc9Aq+2rxOt0RFU6gPcrte0A=="; }; }; "process-nextick-args-2.0.1" = { @@ -4330,16 +4222,16 @@ let version = "1.2.4"; src = fetchurl { url = "https://registry.npmjs.org/proto-list/-/proto-list-1.2.4.tgz"; - sha1 = "212d5bfe1318306a420f6402b8e26ff39647a849"; + sha512 = "vtK/94akxsTMhe0/cbfpR+syPuszcuwhqVjJq26CuNDgFGj682oRBXOP5MJpv2r7JtE8MsiepGIqvvOTBwn2vA=="; }; }; - "psl-1.8.0" = { + "psl-1.9.0" = { name = "psl"; packageName = "psl"; - version = "1.8.0"; + version = "1.9.0"; src = fetchurl { - url = "https://registry.npmjs.org/psl/-/psl-1.8.0.tgz"; - sha512 = "RIdOzyoavK+hA18OGGWDqUTsCLhtA7IcZ/6NCs4fFJaHBDab+pDDmDIByWFRQJq2Cd7r1OoQxBGKOaztq+hjIQ=="; + url = "https://registry.npmjs.org/psl/-/psl-1.9.0.tgz"; + sha512 = "E/ZsdU4HLs/68gYzgGTkMicWTLPdAftJLfJFlLUAAKZGkStNU72sZjT66SnMDVOfOWY/YAoiD7Jxa9iHvngcag=="; }; }; "pump-2.0.1" = { @@ -4360,13 +4252,13 @@ let sha512 = "oClZI37HvuUJJxSKKrC17bZ9Cu0ZYhEAGPsPUy9KlMUmv9dKX2o77RUmq7f3XjIxbwyGwYzbzQ1L2Ks8sIradQ=="; }; }; - "punycode-2.1.1" = { + "punycode-2.3.0" = { name = "punycode"; packageName = "punycode"; - version = "2.1.1"; + version = "2.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/punycode/-/punycode-2.1.1.tgz"; - sha512 = "XRsRjdf+j5ml+y/6GKHPZbrF/8p2Yga0JPtdqTIY2Xe5ohJPD9saDJJLPvp9+NSBprVvevdXZybnj2cv8OEd0A=="; + url = "https://registry.npmjs.org/punycode/-/punycode-2.3.0.tgz"; + sha512 = "rRV+zQD8tVFys26lAGR9WUuS4iUAngJScM+ZRSKtvl5tKeZ2t5bvdNFdNHBW9FWR4guGHlgmsZ1G7BSm2wTbuA=="; }; }; "q-1.5.1" = { @@ -4375,7 +4267,7 @@ let version = "1.5.1"; src = fetchurl { url = "https://registry.npmjs.org/q/-/q-1.5.1.tgz"; - sha1 = "7e32f75b41381291d04611f1bf14109ac00651d7"; + sha512 = "kV/CThkXo6xyFEZUugw/+pIOywXcDbFYgSct5cT3gqlbkBE1SJdwy6UQoZvodiWF/ckQLZyDE/Bu1M6gVu5lVw=="; }; }; "qs-6.5.3" = { @@ -4387,6 +4279,15 @@ let sha512 = "qxXIEh4pCGfHICj1mAJQ2/2XVZkjCDTcEgfoSQxc/fYivUZxTkk7L3bDBJSoNrEzXI17oUO5Dp07ktqE5KzczA=="; }; }; + "queue-microtask-1.2.3" = { + name = "queue-microtask"; + packageName = "queue-microtask"; + version = "1.2.3"; + src = fetchurl { + url = "https://registry.npmjs.org/queue-microtask/-/queue-microtask-1.2.3.tgz"; + sha512 = "NuaNSa6flKT5JaSYQzJok04JzTL1CA6aGhv5rfLW3PgqA+M2ChpZQnAC8h8i4ZFkBS8X5RqkDBHA7r4hej3K9A=="; + }; + }; "randomatic-3.1.1" = { name = "randomatic"; packageName = "randomatic"; @@ -4411,7 +4312,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/read-pkg/-/read-pkg-1.1.0.tgz"; - sha1 = "f5ffaa5ecd29cb31c0474bca7d756b6bb29e3f28"; + sha512 = "7BGwRHqt4s/uVbuyoeejRn4YmFnYZiFl4AuaeXHlgZf3sONF0SOGlxs2Pw8g6hCKupo08RafIO5YXFNOKTfwsQ=="; }; }; "read-pkg-up-1.0.1" = { @@ -4420,7 +4321,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/read-pkg-up/-/read-pkg-up-1.0.1.tgz"; - sha1 = "9d63c13276c065918d57f002a57f40a1b643fb02"; + sha512 = "WD9MTlNtI55IwYUS27iHh9tK3YoIVhxis8yKhLpTqWtml739uXc9NWTpxoHkfZf3+DkCCsXox94/VWZniuZm6A=="; }; }; "readable-stream-1.1.14" = { @@ -4429,16 +4330,16 @@ let version = "1.1.14"; src = fetchurl { url = "https://registry.npmjs.org/readable-stream/-/readable-stream-1.1.14.tgz"; - sha1 = "7cf4c54ef648e3813084c636dd2079e166c081d9"; + sha512 = "+MeVjFf4L44XUkhM1eYbD8fyEsxcV81pqMSR5gblfcLCHfZvbrqy4/qYHE+/R5HoBUT11WV5O08Cr1n3YXkWVQ=="; }; }; - "readable-stream-2.3.7" = { + "readable-stream-2.3.8" = { name = "readable-stream"; packageName = "readable-stream"; - version = "2.3.7"; + version = "2.3.8"; src = fetchurl { - url = "https://registry.npmjs.org/readable-stream/-/readable-stream-2.3.7.tgz"; - sha512 = "Ebho8K4jIbHAxnuxi7o42OrZgF/ZTNcsZj6nRKyUmkhLFq8CHItp/fy6hQZuZmP/n3yZ9VBUbp4zz/mX8hmYPw=="; + url = "https://registry.npmjs.org/readable-stream/-/readable-stream-2.3.8.tgz"; + sha512 = "8p0AUk4XODgIewSi0l8Epjs+EVnWiK7NoDIEGU0HhE7+ZyY8D1IMY7odu5lRrFXGg71L15KG8QrPmum45RTtdA=="; }; }; "readdirp-2.2.1" = { @@ -4450,13 +4351,13 @@ let sha512 = "1JU/8q+VgFZyxwrJ+SVIOsh+KywWGpds3NTqikiKpDMZWScmAYyKIgqkO+ARvNWJfXeXR1zxz7aHF4u4CyH6vQ=="; }; }; - "readdirp-3.5.0" = { + "readdirp-3.6.0" = { name = "readdirp"; packageName = "readdirp"; - version = "3.5.0"; + version = "3.6.0"; src = fetchurl { - url = "https://registry.npmjs.org/readdirp/-/readdirp-3.5.0.tgz"; - sha512 = "cMhu7c/8rdhkHXWsY+osBhfSy0JikwpHK/5+imo+LpeasTF8ouErHrlYkwT0++njiyuDvc7OFY5T3ukvZ8qmFQ=="; + url = "https://registry.npmjs.org/readdirp/-/readdirp-3.6.0.tgz"; + sha512 = "hOS089on8RduqdbhvQ5Z37A0ESjsqz6qnRcffsMU3495FuTdqSm+7bhJ29JvIOsBDEEnan5DPu9t3To9VRlMzA=="; }; }; "rechoir-0.6.2" = { @@ -4465,7 +4366,7 @@ let version = "0.6.2"; src = fetchurl { url = "https://registry.npmjs.org/rechoir/-/rechoir-0.6.2.tgz"; - sha1 = "85204b54dba82d5742e28c96756ef43af50e3384"; + sha512 = "HFM8rkZ+i3zrV+4LQjwQ0W+ez98pApMGM3HUrN04j3CqzPOzl9nmP15Y8YXNm8QHGv/eacOVEjqhmWpkRV0NAw=="; }; }; "regex-cache-0.4.4" = { @@ -4486,15 +4387,6 @@ let sha512 = "J6SDjUgDxQj5NusnOtdFxDwN/+HWykR8GELwctJ7mdqhcyy1xEc4SRFHUXvxTp661YaVKAjfRLZ9cCqS6tn32A=="; }; }; - "regexpp-2.0.1" = { - name = "regexpp"; - packageName = "regexpp"; - version = "2.0.1"; - src = fetchurl { - url = "https://registry.npmjs.org/regexpp/-/regexpp-2.0.1.tgz"; - sha512 = "lv0M6+TkDVniA3aD1Eg0DVpfU/booSu7Eev3TDO/mZKHBfVjgCGTV4t4buppESEYDtkArYFOxTJWv6S5C+iaNw=="; - }; - }; "remove-bom-buffer-3.0.0" = { name = "remove-bom-buffer"; packageName = "remove-bom-buffer"; @@ -4510,7 +4402,7 @@ let version = "1.2.0"; src = fetchurl { url = "https://registry.npmjs.org/remove-bom-stream/-/remove-bom-stream-1.2.0.tgz"; - sha1 = "05f1a593f16e42e1fb90ebf59de8e569525f9523"; + sha512 = "wigO8/O08XHb8YPzpDDT+QmRANfW6vLqxfaXm1YXhnFf3AkSLyjfG3GEFg4McZkmgL7KvCj5u2KczkvSP6NfHA=="; }; }; "remove-trailing-separator-1.1.0" = { @@ -4519,7 +4411,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/remove-trailing-separator/-/remove-trailing-separator-1.1.0.tgz"; - sha1 = "c24bce2a283adad5bc3f58e0d48249b92379d8ef"; + sha512 = "/hS+Y0u3aOfIETiaiirUFwDBDzmXPvO+jAfKTitUngIPzdKc6Z0LoFjM/CK5PL4C+eKwHohlHAb6H0VFfmmUsw=="; }; }; "repeat-element-1.1.4" = { @@ -4537,7 +4429,7 @@ let version = "1.6.1"; src = fetchurl { url = "https://registry.npmjs.org/repeat-string/-/repeat-string-1.6.1.tgz"; - sha1 = "8dcae470e1c88abc2d600fff4a776286da75e637"; + sha512 = "PV0dzCYDNfRi1jCDbJzpW7jNNDRuCOG/jI5ctQcGKt/clZD+YcPS3yIlWuTJMmESC8aevCFmWJy5wjAFgNqN6w=="; }; }; "replace-ext-1.0.1" = { @@ -4555,7 +4447,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/replace-homedir/-/replace-homedir-1.0.0.tgz"; - sha1 = "e87f6d513b928dde808260c12be7fec6ff6e798c"; + sha512 = "CHPV/GAglbIB1tnQgaiysb8H2yCy8WQ7lcEwQ/eT+kLj0QHV8LnJW0zpqpE7RSkrMSRoa+EBoag86clf7WAgSg=="; }; }; "request-2.88.2" = { @@ -4573,7 +4465,7 @@ let version = "2.1.1"; src = fetchurl { url = "https://registry.npmjs.org/require-directory/-/require-directory-2.1.1.tgz"; - sha1 = "8c64ad5fd30dab1c976e2344ffe7f792a6a6df42"; + sha512 = "fGxEI7+wsG9xrvdjsrlmL22OMTTiHRwAMroiEeMgq8gzoLC/PQr7RsRDSTLUg/bZAZtF+TVIkHc6/4RIKrui+Q=="; }; }; "require-main-filename-1.0.1" = { @@ -4582,16 +4474,16 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/require-main-filename/-/require-main-filename-1.0.1.tgz"; - sha1 = "97f717b69d48784f5f526a6c5aa8ffdda055a4d1"; + sha512 = "IqSUtOVP4ksd1C/ej5zeEh/BIP2ajqpn8c5x+q99gvcIG/Qf0cud5raVnE/Dwd0ua9TXYDoDc0RE5hBSdz22Ug=="; }; }; - "resolve-1.22.0" = { + "resolve-1.22.3" = { name = "resolve"; packageName = "resolve"; - version = "1.22.0"; + version = "1.22.3"; src = fetchurl { - url = "https://registry.npmjs.org/resolve/-/resolve-1.22.0.tgz"; - sha512 = "Hhtrw0nLeSrFQ7phPp4OOcVjLPIeMnRlr5mcnVuMe7M/7eBn98A3hmFRLoFo3DLZkivSYwhRUJTyPyWAk56WLw=="; + url = "https://registry.npmjs.org/resolve/-/resolve-1.22.3.tgz"; + sha512 = "P8ur/gp/AmbEzjr729bZnLjXK5Z+4P0zhIJgBgzqRih7hL7BOukHGtSTA3ACMY467GRFz3duQsi0bDZdR7DKdw=="; }; }; "resolve-dir-1.0.1" = { @@ -4600,7 +4492,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/resolve-dir/-/resolve-dir-1.0.1.tgz"; - sha1 = "79a40644c362be82f26effe739c9bb5382046f43"; + sha512 = "R7uiTjECzvOsWSfdM0QKFNBVFcK27aHOUwdvK53BcW8zqnGdYp0Fbj82cy54+2A4P2tFM22J5kRfe1R+lM/1yg=="; }; }; "resolve-from-4.0.0" = { @@ -4618,7 +4510,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/resolve-options/-/resolve-options-1.1.0.tgz"; - sha1 = "32bb9e39c06d67338dc9378c0d6d6074566ad131"; + sha512 = "NYDgziiroVeDC29xq7bp/CacZERYsA9bXYd1ZmcJlF3BcrZv5pTb4NG7SjdyKDnXZ84aC4vo2u6sNKIA1LCu/A=="; }; }; "resolve-url-0.2.1" = { @@ -4627,16 +4519,7 @@ let version = "0.2.1"; src = fetchurl { url = "https://registry.npmjs.org/resolve-url/-/resolve-url-0.2.1.tgz"; - sha1 = "2c637fe77c893afd2a663fe21aa9080068e2052a"; - }; - }; - "restore-cursor-3.1.0" = { - name = "restore-cursor"; - packageName = "restore-cursor"; - version = "3.1.0"; - src = fetchurl { - url = "https://registry.npmjs.org/restore-cursor/-/restore-cursor-3.1.0.tgz"; - sha512 = "l+sSefzHpj5qimhFSE5a8nufZYAM3sBSVMAPtYkmC+4EH2anSGaEMXSD0izRQbu9nfyQ9y5JrVmp7E8oZrUjvA=="; + sha512 = "ZuF55hVUQaaczgOIwqWzkEcEidmlD/xl44x1UZnhOXcYuFN2S6+rcxpG+C1N3So0wvNI3DmJICUFfu2SxhBmvg=="; }; }; "ret-0.1.15" = { @@ -4648,13 +4531,13 @@ let sha512 = "TTlYpa+OL+vMMNG24xSlQGEJ3B/RzEfUlLct7b5G/ytav+wPrplCpVMFuwzXbkecJrb6IYo1iFb0S9v37754mg=="; }; }; - "rimraf-2.6.3" = { - name = "rimraf"; - packageName = "rimraf"; - version = "2.6.3"; + "reusify-1.0.4" = { + name = "reusify"; + packageName = "reusify"; + version = "1.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/rimraf/-/rimraf-2.6.3.tgz"; - sha512 = "mwqeW5XsA2qAejG46gYdENaxXjx9onRNCfn7L0duuP4hCuTIi/QO7PDK07KJfp1d+izWPrzEJDcSqBa0OZQriA=="; + url = "https://registry.npmjs.org/reusify/-/reusify-1.0.4.tgz"; + sha512 = "U9nH88a3fc/ekCF1l0/UP1IosiuIjyTh7hBvXVMHYgVcfGvt897Xguj2UOLDeI5BG2m7/uwyaLVT6fbtCwTyzw=="; }; }; "rimraf-2.7.1" = { @@ -4666,22 +4549,22 @@ let sha512 = "uWjbaKIK3T1OSVptzX7Nl6PvQ3qAGtKEtVRjRuazjfL3Bx5eI409VZSqgND+4UNnmzLVdPj9FqFJNPqBZFve4w=="; }; }; - "run-async-2.4.1" = { - name = "run-async"; - packageName = "run-async"; - version = "2.4.1"; + "rimraf-3.0.2" = { + name = "rimraf"; + packageName = "rimraf"; + version = "3.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/run-async/-/run-async-2.4.1.tgz"; - sha512 = "tvVnVv01b8c1RrA6Ep7JkStj85Guv/YrMcwqYQnwjsAS2cTmmPGBBjAjpCW7RrSodNSoE2/qg9O4bceNvUuDgQ=="; + url = "https://registry.npmjs.org/rimraf/-/rimraf-3.0.2.tgz"; + sha512 = "JZkJMZkAGFFPP2YqXZXPbMlMBgsxzE8ILs4lMIX/2o0L9UBw9O/Y3o6wFw/i9YLapcUJWwqbi3kdxIPdC62TIA=="; }; }; - "rxjs-6.6.7" = { - name = "rxjs"; - packageName = "rxjs"; - version = "6.6.7"; + "run-parallel-1.2.0" = { + name = "run-parallel"; + packageName = "run-parallel"; + version = "1.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/rxjs/-/rxjs-6.6.7.tgz"; - sha512 = "hTdwr+7yYNIT5n4AMYp85KA6yw2Va0FLa3Rguvbpa4W3I5xynaBZo41cM3XM+4Q6fRMj3sBYIR1VAmZMXYJvRQ=="; + url = "https://registry.npmjs.org/run-parallel/-/run-parallel-1.2.0.tgz"; + sha512 = "5l4VyZR86LZ/lDxZTR6jqL8AFE2S0IFLMP26AbjsLVADxHdhB/c0GUsH+y39UfCi3dzz8OlQuPmnaJOMoDHQBA=="; }; }; "safe-buffer-5.1.2" = { @@ -4708,7 +4591,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/safe-regex/-/safe-regex-1.1.0.tgz"; - sha1 = "40a3669f3b077d1e943d44629e157dd48023bf2e"; + sha512 = "aJXcif4xnaNUzvUuC5gcb46oTS7zvg4jpMTnuqtrEPlR3vFr4pxtdTwaF1Qs3Enjn9HK+ZlwQui+a7z0SywIzg=="; }; }; "safer-buffer-2.1.2" = { @@ -4720,15 +4603,6 @@ let sha512 = "YZo3K82SD7Riyi0E1EQPojLz7kpepnSQI9IyPbHHg1XXXevb5dJI7tpyN2ADxGcQbHG7vcyRHk0cbwqcQriUtg=="; }; }; - "sax-1.2.4" = { - name = "sax"; - packageName = "sax"; - version = "1.2.4"; - src = fetchurl { - url = "https://registry.npmjs.org/sax/-/sax-1.2.4.tgz"; - sha512 = "NqVDv9TpANUjFm0N8uM5GxL36UgKi9/atZw+x7YFnQ8ckwFGKrl4xX4yWtrey3UJm5nP1kUbnYgLopqWNSRhWw=="; - }; - }; "seek-bzip-1.0.6" = { name = "seek-bzip"; packageName = "seek-bzip"; @@ -4738,13 +4612,13 @@ let sha512 = "e1QtP3YL5tWww8uKaOCQ18UxIT2laNBXHjV/S2WYCiK4udiv8lkG89KRIoCjUagnAmCBurjF4zEVX2ByBbnCjQ=="; }; }; - "selenium-webdriver-3.6.0" = { + "selenium-webdriver-4.9.2" = { name = "selenium-webdriver"; packageName = "selenium-webdriver"; - version = "3.6.0"; + version = "4.9.2"; src = fetchurl { - url = "https://registry.npmjs.org/selenium-webdriver/-/selenium-webdriver-3.6.0.tgz"; - sha512 = "WH7Aldse+2P5bbFBO4Gle/nuQOdVwpHMTL6raL3uuBj/vPG07k6uzt3aiahu352ONBr5xXh0hDlM3LhtXPOC4Q=="; + url = "https://registry.npmjs.org/selenium-webdriver/-/selenium-webdriver-4.9.2.tgz"; + sha512 = "0gDswAgVn6qbCYckZetQQvQK9tWW1r7LaumhiqY1/Wl/7JEWG0JANsTbZKnmGc3+cUU76zAi5/p0P8LUweXlig=="; }; }; "semver-5.7.1" = { @@ -4756,31 +4630,22 @@ let sha512 = "sauaDf/PZdVgrLTNYHRtpXa1iRiKcaebiKQ1BJdpQlWH2lCvexQdX55snPFyK7QzpudqbCI0qXFfOasHdyNDGQ=="; }; }; - "semver-6.3.0" = { - name = "semver"; - packageName = "semver"; - version = "6.3.0"; - src = fetchurl { - url = "https://registry.npmjs.org/semver/-/semver-6.3.0.tgz"; - sha512 = "b39TBaTSfV6yBrapU89p5fKekE2m/NwnDocOVruQFS1/veMgdzuPcnOM34M6CwxW8jH/lxEa5rBoDeUwu5HHTw=="; - }; - }; "semver-greatest-satisfied-range-1.1.0" = { name = "semver-greatest-satisfied-range"; packageName = "semver-greatest-satisfied-range"; version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/semver-greatest-satisfied-range/-/semver-greatest-satisfied-range-1.1.0.tgz"; - sha1 = "13e8c2658ab9691cb0cd71093240280d36f77a5b"; + sha512 = "Ny/iyOzSSa8M5ML46IAx3iXc6tfOsYU2R4AXi2UpHk60Zrgyq6eqPj/xiOfS0rRl/iiQ/rdJkVjw/5cdUyCntQ=="; }; }; - "serialize-javascript-5.0.1" = { + "serialize-javascript-6.0.0" = { name = "serialize-javascript"; packageName = "serialize-javascript"; - version = "5.0.1"; + version = "6.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/serialize-javascript/-/serialize-javascript-5.0.1.tgz"; - sha512 = "SaaNal9imEO737H2c05Og0/8LUXG7EnsZyMa8MzkmuHoELfT6txuj0cMqRj6zfPKnmQ1yasR4PCJc8x+M4JSPA=="; + url = "https://registry.npmjs.org/serialize-javascript/-/serialize-javascript-6.0.0.tgz"; + sha512 = "Qr3TosvguFt8ePWqsvRfrKyQXIiW+nGbYpy8XK24NQHE83caxWt+mIymTT19DGFbNWNLfEwsrkSmN64lVWB9ag=="; }; }; "set-blocking-2.0.0" = { @@ -4789,7 +4654,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/set-blocking/-/set-blocking-2.0.0.tgz"; - sha1 = "045f9782d011ae9a6803ddd382b24392b3d890f7"; + sha512 = "KiKBS8AnWGEyLzofFfmvKwpdPzqiy16LvQfK3yv/fVH7Bj13/wl3JSR1J+rfgRE9q7xUJK4qvgS8raSOeLUehw=="; }; }; "set-value-2.0.1" = { @@ -4807,43 +4672,25 @@ let version = "1.0.5"; src = fetchurl { url = "https://registry.npmjs.org/setimmediate/-/setimmediate-1.0.5.tgz"; - sha1 = "290cbb232e306942d7d7ea9b83732ab7856f8285"; + sha512 = "MATJdZp8sLqDl/68LfQmbP8zKPLQNV6BIZoIgrscFDQ+RsvK/BxeDQOgyxKKoh0y/8h3BqVFnCqQ/gd+reiIXA=="; }; }; - "shebang-command-1.2.0" = { + "shebang-command-2.0.0" = { name = "shebang-command"; packageName = "shebang-command"; - version = "1.2.0"; + version = "2.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/shebang-command/-/shebang-command-1.2.0.tgz"; - sha1 = "44aac65b695b03398968c39f363fee5deafdf1ea"; + url = "https://registry.npmjs.org/shebang-command/-/shebang-command-2.0.0.tgz"; + sha512 = "kHxr2zZpYtdmrN1qDjrrX/Z1rR1kG8Dx+gkpK1G4eXmvXswmcE1hTWBWYUzlraYw1/yZp6YuDY77YtvbN0dmDA=="; }; }; - "shebang-regex-1.0.0" = { + "shebang-regex-3.0.0" = { name = "shebang-regex"; packageName = "shebang-regex"; - version = "1.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/shebang-regex/-/shebang-regex-1.0.0.tgz"; - sha1 = "da42f49740c0b42db2ca9728571cb190c98efea3"; - }; - }; - "signal-exit-3.0.7" = { - name = "signal-exit"; - packageName = "signal-exit"; - version = "3.0.7"; - src = fetchurl { - url = "https://registry.npmjs.org/signal-exit/-/signal-exit-3.0.7.tgz"; - sha512 = "wnD2ZE+l+SPC/uoS0vXeE9L1+0wuaMqKlfz9AMUo38JsyLSBWSFcHR1Rri62LZc12vLr1gb3jl7iwQhgwpAbGQ=="; - }; - }; - "slice-ansi-2.1.0" = { - name = "slice-ansi"; - packageName = "slice-ansi"; - version = "2.1.0"; + version = "3.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/slice-ansi/-/slice-ansi-2.1.0.tgz"; - sha512 = "Qu+VC3EwYLldKa1fCxuuvULvSJOKEgk9pi8dZeCVK7TqBfUNTH4sFkk4joj8afVSfAYgJoSOetjx9QWOJ5mYoQ=="; + url = "https://registry.npmjs.org/shebang-regex/-/shebang-regex-3.0.0.tgz"; + sha512 = "7++dFhtcx3353uBaq8DDR4NuxBetBzC7ZQOhmTQInHEd6bSrXdiEyzCvG07Z44UYdLShWUyXt5M/yhz8ekcb1A=="; }; }; "snapdragon-0.8.2" = { @@ -4879,7 +4726,7 @@ let version = "0.5.7"; src = fetchurl { url = "https://registry.npmjs.org/source-map/-/source-map-0.5.7.tgz"; - sha1 = "8a039d2d1021d22d1ea14c80d8ea468ba2ef3fcc"; + sha512 = "LbrmJOMUSdEVxIKvdcJzQC+nQhe8FUZQTXQy6+I75skNgn3OoQ0DZA8YnFa7gp8tqtL3KPf1kmo0R5DoApeSGQ=="; }; }; "source-map-0.6.1" = { @@ -4900,6 +4747,15 @@ let sha512 = "Htz+RnsXWk5+P2slx5Jh3Q66vhQj1Cllm0zvnaY98+NFx+Dv2CF/f5O/t8x+KaNdrdIAsruNzoh/KpialbqAnw=="; }; }; + "source-map-resolve-0.6.0" = { + name = "source-map-resolve"; + packageName = "source-map-resolve"; + version = "0.6.0"; + src = fetchurl { + url = "https://registry.npmjs.org/source-map-resolve/-/source-map-resolve-0.6.0.tgz"; + sha512 = "KXBr9d/fO/bWo97NXsPIAW1bFSBOuCnjbNTBMO7N59hsv5i9yzRDfcYwwt0l04+VqnKC+EwzvJZIP/qkuMgR/w=="; + }; + }; "source-map-url-0.4.1" = { name = "source-map-url"; packageName = "source-map-url"; @@ -4918,13 +4774,13 @@ let sha512 = "dSO0DDYUahUt/0/pD/Is3VIm5TGJjludZ0HVymmhYF6eNA53PVLhnUk0znSYbH8IYBuJdCE+1luR22jNLMaQdw=="; }; }; - "spdx-correct-3.1.1" = { + "spdx-correct-3.2.0" = { name = "spdx-correct"; packageName = "spdx-correct"; - version = "3.1.1"; + version = "3.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/spdx-correct/-/spdx-correct-3.1.1.tgz"; - sha512 = "cOYcUWwhCuHCXi49RhFRCyJEK3iPj1Ziz9DpViV3tbZOwXD49QzIN3MpOLJNxh2qwq2lJJZaKMVw9qNi4jTC0w=="; + url = "https://registry.npmjs.org/spdx-correct/-/spdx-correct-3.2.0.tgz"; + sha512 = "kN9dJbvnySHULIluDHy32WHRUu3Og7B9sbY7tsFLctQkIqnMh3hErYgdMjTYuqmcXX+lK5T1lnUt3G7zNswmZA=="; }; }; "spdx-exceptions-2.3.0" = { @@ -4945,13 +4801,13 @@ let sha512 = "cbqHunsQWnJNE6KhVSMsMeH5H/L9EpymbzqTQ3uLwNCLZ1Q481oWaofqH7nO6V07xlXwY6PhQdQ2IedWx/ZK4Q=="; }; }; - "spdx-license-ids-3.0.11" = { + "spdx-license-ids-3.0.13" = { name = "spdx-license-ids"; packageName = "spdx-license-ids"; - version = "3.0.11"; + version = "3.0.13"; src = fetchurl { - url = "https://registry.npmjs.org/spdx-license-ids/-/spdx-license-ids-3.0.11.tgz"; - sha512 = "Ctl2BrFiM0X3MANYgj3CkygxhRmr9mi6xhejbdO960nF6EDJApTYpn0BQnDKlnNBULKiCN1n3w9EBkHK8ZWg+g=="; + url = "https://registry.npmjs.org/spdx-license-ids/-/spdx-license-ids-3.0.13.tgz"; + sha512 = "XkD+zwiqXHikFZm4AX/7JSCXA98U5Db4AFd5XUg/+9UNtnH75+Z9KxtpYiJZx36mUDVOwH83pl7yvCer6ewM3w=="; }; }; "split-string-3.1.0" = { @@ -4963,15 +4819,6 @@ let sha512 = "NzNVhJDYpwceVVii8/Hu6DKfD2G+NrQHlS/V/qgv763EYudVwEcMQNxd2lh+0VrUByXN/oJkl5grOhYWvQUYiw=="; }; }; - "sprintf-js-1.0.3" = { - name = "sprintf-js"; - packageName = "sprintf-js"; - version = "1.0.3"; - src = fetchurl { - url = "https://registry.npmjs.org/sprintf-js/-/sprintf-js-1.0.3.tgz"; - sha1 = "04e6926f662895354f3dd015203633b857297e2c"; - }; - }; "sshpk-1.17.0" = { name = "sshpk"; packageName = "sshpk"; @@ -4987,7 +4834,7 @@ let version = "0.0.10"; src = fetchurl { url = "https://registry.npmjs.org/stack-trace/-/stack-trace-0.0.10.tgz"; - sha1 = "547c70b347e8d32b4e108ea1a2a159e5fdde19c0"; + sha512 = "KGzahc7puUKkzyMt+IqAep+TVNbKP+k2Lmwhub39m1AsTSkaDutx56aDCo+HLDzf/D26BIHTJWNiTG1KAJiQCg=="; }; }; "static-extend-0.1.2" = { @@ -4996,7 +4843,7 @@ let version = "0.1.2"; src = fetchurl { url = "https://registry.npmjs.org/static-extend/-/static-extend-0.1.2.tgz"; - sha1 = "60809c39cbff55337226fd5e0b520f341f1fb5c6"; + sha512 = "72E9+uLc27Mt718pMHt9VMNiAL4LMsmDbBva8mxWUCkT07fSzEGMYUCk0XWY6lp0j6RBAG4cJ3mWuZv2OE3s0g=="; }; }; "stream-exhaust-1.0.2" = { @@ -5023,16 +4870,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/string-width/-/string-width-1.0.2.tgz"; - sha1 = "118bdf5b8cdc51a2a7e70d211e07e2b0b9b107d3"; - }; - }; - "string-width-3.1.0" = { - name = "string-width"; - packageName = "string-width"; - version = "3.1.0"; - src = fetchurl { - url = "https://registry.npmjs.org/string-width/-/string-width-3.1.0.tgz"; - sha512 = "vafcv6KjVZKSgz06oM/H6GDBrAtz8vdhQakGjFIvNrHA6y3HCF1CInLy+QLq8dTJPQ1b+KDUqDFctkdRW44e1w=="; + sha512 = "0XsVpQLnVCXHJfyEs8tC0zpTVIr5PKKsQtkT29IwupnPTjtPmQ3xT/4yCREF9hYkV/3M3kzcUTSAZT6a6h81tw=="; }; }; "string-width-4.2.3" = { @@ -5050,7 +4888,7 @@ let version = "0.10.31"; src = fetchurl { url = "https://registry.npmjs.org/string_decoder/-/string_decoder-0.10.31.tgz"; - sha1 = "62e203bc41766c6c28c9fc84301dab1c5310fa94"; + sha512 = "ev2QzSzWPYmy9GuqfIVildA4OdcGLeFZQrq5ys6RtiuF+RQQiZWr8TZNyAcuVXyQRYfEO+MsoB/1BuQVhOJuoQ=="; }; }; "string_decoder-1.1.1" = { @@ -5068,16 +4906,7 @@ let version = "3.0.1"; src = fetchurl { url = "https://registry.npmjs.org/strip-ansi/-/strip-ansi-3.0.1.tgz"; - sha1 = "6a385fb8853d952d5ff05d0e8aaf94278dc63dcf"; - }; - }; - "strip-ansi-5.2.0" = { - name = "strip-ansi"; - packageName = "strip-ansi"; - version = "5.2.0"; - src = fetchurl { - url = "https://registry.npmjs.org/strip-ansi/-/strip-ansi-5.2.0.tgz"; - sha512 = "DuRs1gKbBqsMKIZlrffwlug8MHkcnpjs5VPmL1PAh+mA30U0DTotfDZ0d2UUsXpPmPmMMJ6W773MaA3J+lbiWA=="; + sha512 = "VhumSSbBqDTP8p2ZLKj40UjBCV4+v8bUSEpUb4KjRgWk9pbqGF4REFj6KEagidb2f/M6AzC0EmFyDNGaw9OCzg=="; }; }; "strip-ansi-6.0.1" = { @@ -5095,7 +4924,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/strip-bom/-/strip-bom-2.0.0.tgz"; - sha1 = "6219a85616520491f35788bdbf1447a99c7e6b0e"; + sha512 = "kwrX1y7czp1E69n2ajbG65mIo9dqvJ+8aBQXOGVxqwvNbsXdFM6Lq37dLAY3mknUwru8CfcCbfOLL/gMo+fi3g=="; }; }; "strip-bom-string-1.0.0" = { @@ -5104,7 +4933,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/strip-bom-string/-/strip-bom-string-1.0.0.tgz"; - sha1 = "e5211e9224369fbb81d633a2f00044dc8cedad92"; + sha512 = "uCC2VHvQRYu+lMh4My/sFNmF2klFymLX1wHJeXnbEJERpV/ZsVuonzerjfrGpIGF7LBVa1O7i9kjiWvJiFck8g=="; }; }; "strip-dirs-2.1.0" = { @@ -5140,16 +4969,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/supports-color/-/supports-color-2.0.0.tgz"; - sha1 = "535d045ce6b6363fa40117084629995e9df324c7"; - }; - }; - "supports-color-5.5.0" = { - name = "supports-color"; - packageName = "supports-color"; - version = "5.5.0"; - src = fetchurl { - url = "https://registry.npmjs.org/supports-color/-/supports-color-5.5.0.tgz"; - sha512 = "QjVjwdXIt408MIiAqCX4oUKsgU2EqAGzs2Ppkm4aQYbjm+ZEWEcW4SfFNTr4uMNZma0ey4f5lgLrkB0aX0QMow=="; + sha512 = "KKNVtd6pCYgPIKU4cp2733HWYCpplQhddZLBUryaAHou723x+FRzQ5Df824Fj+IyyuiQTRoub4SnIFfIcrp70g=="; }; }; "supports-color-7.2.0" = { @@ -5185,16 +5005,7 @@ let version = "1.5.0"; src = fetchurl { url = "https://registry.npmjs.org/sver-compat/-/sver-compat-1.5.0.tgz"; - sha1 = "3cf87dfeb4d07b4a3f14827bc186b3fd0c645cd8"; - }; - }; - "table-5.4.6" = { - name = "table"; - packageName = "table"; - version = "5.4.6"; - src = fetchurl { - url = "https://registry.npmjs.org/table/-/table-5.4.6.tgz"; - sha512 = "wmEc8m4fjnob4gt5riFRtTu/6+4rSe12TpAELNSqHMfF3IqnA+CH37USM6/YR3qRZv7e56kAEAtd6nKZaxe0Ug=="; + sha512 = "aFTHfmjwizMNlNE6dsGmoAM4lHjL0CyiobWaFiXWSlD7cIxshW422Nb8KbXCmR6z+0ZEPY+daXJrDyh/vuwTyg=="; }; }; "tar-stream-1.6.2" = { @@ -5212,7 +5023,7 @@ let version = "0.2.0"; src = fetchurl { url = "https://registry.npmjs.org/text-table/-/text-table-0.2.0.tgz"; - sha1 = "7f5ee823ae805207c00af2df4a84ec3fcfa570b4"; + sha512 = "N+8UisAXDGk8PFXP4HAzVR9nbfmVJ3zYLAWiTIoqC5v5isinhr+r5uaO8+7r3BMfuNIufIsA7RdpVgacC2cSpw=="; }; }; "through-2.3.8" = { @@ -5221,7 +5032,7 @@ let version = "2.3.8"; src = fetchurl { url = "https://registry.npmjs.org/through/-/through-2.3.8.tgz"; - sha1 = "0dd4c9ffaabc357960b1b724115d7e0e86a2e1f5"; + sha512 = "w89qg7PI8wAdvX60bMDP+bFoD5Dvhm9oLheFp5O4a2QF0cSBGsBX4qZmadPMvVqlLJBBci+WqGGOAPvcDeNSVg=="; }; }; "through2-2.0.5" = { @@ -5233,6 +5044,15 @@ let sha512 = "/mrRod8xqpA+IHSLyGCQ2s8SPHiCDEeQJSep1jqLYeEUClOFG2Qsh+4FU6G9VeqpZnGW/Su8LQGc4YKni5rYSQ=="; }; }; + "through2-3.0.2" = { + name = "through2"; + packageName = "through2"; + version = "3.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/through2/-/through2-3.0.2.tgz"; + sha512 = "enaDQ4MUyP2W6ZyT6EsMzqBPZaM/avg8iuo+l2d3QCs0J+6RaqkHV/2/lOwDTueBHeJ/2LG9lrLW3d5rWPucuQ=="; + }; + }; "through2-filter-3.0.0" = { name = "through2-filter"; packageName = "through2-filter"; @@ -5248,7 +5068,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/time-stamp/-/time-stamp-1.1.0.tgz"; - sha1 = "764a5a11af50561921b133f3b44e618687e0f5c3"; + sha512 = "gLCeArryy2yNTRzTGKbZbloctj64jkZ57hj5zdraXue6aFgd6PmvVtEyiUU+hvU0v7q08oVv8r8ev0tRo6bvgw=="; }; }; "timed-out-4.0.1" = { @@ -5257,7 +5077,7 @@ let version = "4.0.1"; src = fetchurl { url = "https://registry.npmjs.org/timed-out/-/timed-out-4.0.1.tgz"; - sha1 = "f32eacac5a175bea25d7fab565ab3ed8741ef56f"; + sha512 = "G7r3AhovYtr5YKOWQkta8RKAPb+J9IsO4uVmzjl8AZwfhs8UcUwTiD6gcJYSgOtzyjvQKrKYn41syHbUWMkafA=="; }; }; "timers-ext-0.1.7" = { @@ -5269,22 +5089,13 @@ let sha512 = "b85NUNzTSdodShTIbky6ZF02e8STtVVfD+fu4aXXShEELpozH+bCpJLYMPZbsABN2wDH7fJpqIoXxJpzbf0NqQ=="; }; }; - "tmp-0.0.30" = { + "tmp-0.2.1" = { name = "tmp"; packageName = "tmp"; - version = "0.0.30"; - src = fetchurl { - url = "https://registry.npmjs.org/tmp/-/tmp-0.0.30.tgz"; - sha1 = "72419d4a8be7d6ce75148fd8b324e593a711c2ed"; - }; - }; - "tmp-0.0.33" = { - name = "tmp"; - packageName = "tmp"; - version = "0.0.33"; + version = "0.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/tmp/-/tmp-0.0.33.tgz"; - sha512 = "jRCJlojKnZ3addtTOjdIqoRuPEKBvNXcGYqzO6zWZX8KfKEpnGY5jfggJQ3EjKuu8D4bJRr0y+cYJFmYbImXGw=="; + url = "https://registry.npmjs.org/tmp/-/tmp-0.2.1.tgz"; + sha512 = "76SUhtfqR2Ijn+xllcI5P1oyannHNHByD80W1q447gU3mp9G9PSpGdWmjUOHRDPiHYacIk66W7ubDTuPF3BEtQ=="; }; }; "to-absolute-glob-2.0.2" = { @@ -5293,7 +5104,7 @@ let version = "2.0.2"; src = fetchurl { url = "https://registry.npmjs.org/to-absolute-glob/-/to-absolute-glob-2.0.2.tgz"; - sha1 = "1865f43d9e74b0822db9f145b78cff7d0f7c849b"; + sha512 = "rtwLUQEwT8ZeKQbyFJyomBRYXyE16U5VKuy0ftxLMK/PZb2fkOsg5r9kHdauuVDbsNdIBoC/HCthpidamQFXYA=="; }; }; "to-buffer-1.1.1" = { @@ -5311,7 +5122,7 @@ let version = "0.3.0"; src = fetchurl { url = "https://registry.npmjs.org/to-object-path/-/to-object-path-0.3.0.tgz"; - sha1 = "297588b7b0e7e0ac08e04e672f85c1f4999e17af"; + sha512 = "9mWHdnGRuh3onocaHzukyvCZhzvr6tiflAy/JRFXcJX0TjgfWA9pk9t8CMbzmBE4Jfw58pXbkngtBtqYxzNEyg=="; }; }; "to-regex-3.0.2" = { @@ -5329,7 +5140,7 @@ let version = "2.1.1"; src = fetchurl { url = "https://registry.npmjs.org/to-regex-range/-/to-regex-range-2.1.1.tgz"; - sha1 = "7c80c17b9dfebe599e27367e0d4dd5590141db38"; + sha512 = "ZZWNfCjUokXXDGXFpZehJIkZqq91BcULFq/Pi7M5i4JnxXdhMKAK682z8bCW3o8Hj1wuuzoKcW3DfVzaP6VuNg=="; }; }; "to-regex-range-5.0.1" = { @@ -5347,7 +5158,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/to-through/-/to-through-2.0.0.tgz"; - sha1 = "fc92adaba072647bc0b67d6b03664aa195093af6"; + sha512 = "+QIz37Ly7acM4EMdw2PRN389OneM5+d844tirkGp4dPKzI5OE72V9OsbFp+CIYJDahZ41ZV05hNtcPAQUAm9/Q=="; }; }; "touch-0.0.3" = { @@ -5356,7 +5167,7 @@ let version = "0.0.3"; src = fetchurl { url = "https://registry.npmjs.org/touch/-/touch-0.0.3.tgz"; - sha1 = "51aef3d449571d4f287a5d87c9c8b49181a0db1d"; + sha512 = "/LQ54KM9rPf3rGXGo2UPQWx3ol242Zg6Whq27H5DEmZhCJo+pm9N5BzRGepO9vTVhYxpXJdcc1+3uaYt9NyeKg=="; }; }; "tough-cookie-2.5.0" = { @@ -5374,7 +5185,7 @@ let version = "0.3.9"; src = fetchurl { url = "https://registry.npmjs.org/traverse/-/traverse-0.3.9.tgz"; - sha1 = "717b8f220cc0bb7b44e40514c22b2e8bbc70d8b9"; + sha512 = "iawgk0hLP3SxGKDfnDJf8wTz4p2qImnyihM5Hh/sGvQ3K37dPi/w8sRhdNIxYA1TwFwc5mDhIJq+O0RsvXBKdQ=="; }; }; "tree-kill-1.2.2" = { @@ -5392,16 +5203,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/trim-repeated/-/trim-repeated-1.0.0.tgz"; - sha1 = "e3646a2ea4e891312bf7eace6cfb05380bc01c21"; - }; - }; - "tslib-1.14.1" = { - name = "tslib"; - packageName = "tslib"; - version = "1.14.1"; - src = fetchurl { - url = "https://registry.npmjs.org/tslib/-/tslib-1.14.1.tgz"; - sha512 = "Xni35NKzjgMrwevysHTCArtLDpPvye8zV/0E4EyYn43P7/7qvQwPh9BGkHewbMulVntbigmcT7rdX3BNo9wRJg=="; + sha512 = "pkonvlKk8/ZuR0D5tLW8ljt5I8kmxp2XKymhepUeOdCEfKpZaktSArkLHZt76OB1ZvO9bssUsDty4SWhLvZpLg=="; }; }; "tunnel-agent-0.6.0" = { @@ -5410,7 +5212,7 @@ let version = "0.6.0"; src = fetchurl { url = "https://registry.npmjs.org/tunnel-agent/-/tunnel-agent-0.6.0.tgz"; - sha1 = "27a5dea06b36b04a0a9966774b290868f0fc40fd"; + sha512 = "McnNiV1l8RYeY8tBgEpuodCC1mLUdbSN+CYBL7kJsJNInOP8UjDDEwdk6Mw60vdLLrr5NHKZhMAOSrR2NZuQ+w=="; }; }; "tweetnacl-0.14.5" = { @@ -5419,7 +5221,7 @@ let version = "0.14.5"; src = fetchurl { url = "https://registry.npmjs.org/tweetnacl/-/tweetnacl-0.14.5.tgz"; - sha1 = "5ae68177f192d4456269d108afa93ff8743f4f64"; + sha512 = "KXXFFdAbFXY4geFIwoyNK+f5Z1b7swfXABfL7HXCmoIWMKU3dmS26672A4EeQtDzLKy7SXmfBu51JolvEKwtGA=="; }; }; "type-1.2.0" = { @@ -5431,22 +5233,22 @@ let sha512 = "+5nt5AAniqsCnu2cEQQdpzCAh33kVx8n0VoFidKpB1dVVLAN/F+bgVOqOJqOnEnrhp222clB5p3vUlD+1QAnfg=="; }; }; - "type-2.6.0" = { + "type-2.7.2" = { name = "type"; packageName = "type"; - version = "2.6.0"; + version = "2.7.2"; src = fetchurl { - url = "https://registry.npmjs.org/type/-/type-2.6.0.tgz"; - sha512 = "eiDBDOmkih5pMbo9OqsqPRGMljLodLcwd5XD5JbtNB0o89xZAwynY9EdCDsJU7LtcVCClu9DvM7/0Ep1hYX3EQ=="; + url = "https://registry.npmjs.org/type/-/type-2.7.2.tgz"; + sha512 = "dzlvlNlt6AXU7EBSfpAscydQ7gXB+pPGsPnfJnZpiNJBDj7IaJzQlBZYGdEi4R9HmPdBv2XmWJ6YUtoTa7lmCw=="; }; }; - "type-check-0.3.2" = { + "type-check-0.4.0" = { name = "type-check"; packageName = "type-check"; - version = "0.3.2"; + version = "0.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/type-check/-/type-check-0.3.2.tgz"; - sha1 = "5884cab512cf1d355e3fb784f30804b2b520db72"; + url = "https://registry.npmjs.org/type-check/-/type-check-0.4.0.tgz"; + sha512 = "XleUoc9uwGXqjWwXaUTZAmzMcFZ5858QA2vvx1Ur5xIcixXIP+8LnFDgRplU30us6teqdlskFfu+ae4K79Ooew=="; }; }; "type-detect-4.0.8" = { @@ -5458,22 +5260,13 @@ let sha512 = "0fr/mIH1dlO+x7TlcMy+bIDqKPsw/70tVyeHW787goQjhmqaZe10uwLujubK9q9Lg6Fiho1KUKDYz0Z7k7g5/g=="; }; }; - "type-fest-0.21.3" = { + "type-fest-0.20.2" = { name = "type-fest"; packageName = "type-fest"; - version = "0.21.3"; + version = "0.20.2"; src = fetchurl { - url = "https://registry.npmjs.org/type-fest/-/type-fest-0.21.3.tgz"; - sha512 = "t0rzBq87m3fVcduHDUFhKmyyX+9eo6WQjZvf51Ea/M0Q7+T374Jp1aUiyUl0GKxp8M/OETVHSDvmkyPgvX+X2w=="; - }; - }; - "type-fest-0.8.1" = { - name = "type-fest"; - packageName = "type-fest"; - version = "0.8.1"; - src = fetchurl { - url = "https://registry.npmjs.org/type-fest/-/type-fest-0.8.1.tgz"; - sha512 = "4dbzIzqvjtgiM5rw1k5rEHtBANKmdudhGyBEajN01fEyhaAIhsoKNy6y7+IN93IfpFtwY9iqi7kD+xwKhQsNJA=="; + url = "https://registry.npmjs.org/type-fest/-/type-fest-0.20.2.tgz"; + sha512 = "Ne+eE4r0/iWnpAxD852z3A+N0Bt5RN//NjJwRd2VFHEmrywxf5vsZlh4R6lixl6B+wz/8d+maTSAkN1FIkI3LQ=="; }; }; "typedarray-0.0.6" = { @@ -5482,7 +5275,7 @@ let version = "0.0.6"; src = fetchurl { url = "https://registry.npmjs.org/typedarray/-/typedarray-0.0.6.tgz"; - sha1 = "867ac74e3864187b1d3d47d996a78ec5c8830777"; + sha512 = "/aCDEGatGvZ2BIk+HmLf4ifCJFwvKFNb9/JeZPMulfgFracn9QFcAf5GO8B/mweUjSoblS5In0cWhqpfs/5PQA=="; }; }; "unbzip2-stream-1.4.3" = { @@ -5500,7 +5293,7 @@ let version = "0.1.2"; src = fetchurl { url = "https://registry.npmjs.org/unc-path-regex/-/unc-path-regex-0.1.2.tgz"; - sha1 = "e73dd3d7b0d7c5ed86fbac6b0ae7d8c6a69d50fa"; + sha512 = "eXL4nmJT7oCpkZsHZUOJo8hcX3GbsiDOa0Qu9F646fi8dT3XuSVopVqAcEiVzSKKH7UoDti23wNX3qGFxcW5Qg=="; }; }; "undertaker-1.3.0" = { @@ -5518,7 +5311,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/undertaker-registry/-/undertaker-registry-1.0.1.tgz"; - sha1 = "5e4bda308e4a8a2ae584f9b9a4359a499825cc50"; + sha512 = "UR1khWeAjugW3548EfQmL9Z7pGMlBgXteQpr1IZeZBtnkCJQJIJ1Scj0mb9wQaPvUZ9Q17XqW6TIaPchJkyfqw=="; }; }; "union-value-1.0.1" = { @@ -5554,7 +5347,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/unset-value/-/unset-value-1.0.0.tgz"; - sha1 = "8376873f7d2335179ffb1e6fc3a8ed0dfc8ab559"; + sha512 = "PcA2tsuGSF9cnySLHTLSh2qrQiJ70mn+r+Glzxv2TWZblxsxCC52BDlZoPCsz7STd9pN7EZetkWZBAvk4cgZdQ=="; }; }; "untildify-3.0.3" = { @@ -5572,7 +5365,7 @@ let version = "2.0.1"; src = fetchurl { url = "https://registry.npmjs.org/unzip-response/-/unzip-response-2.0.1.tgz"; - sha1 = "d2f0f737d16b0615e72a6935ed04214572d56f97"; + sha512 = "N0XH6lqDtFH84JxptQoZYmloF4nzrQqqrAymNj+/gW60AO2AZgOcf4O/nUXJcYfyQkqvMo9lSupBZmmgvuVXlw=="; }; }; "upath-1.2.0" = { @@ -5599,7 +5392,7 @@ let version = "0.1.0"; src = fetchurl { url = "https://registry.npmjs.org/urix/-/urix-0.1.0.tgz"; - sha1 = "da937f7a62e21fec1fd18d49b35c2935067a6c72"; + sha512 = "Am1ousAhSLBeB9cG/7k7r2R0zj50uDRlZHPGbazid5s9rlF1F/QKYObEKSIunSjIOkJZqwRRLpvewjEkM7pSqg=="; }; }; "url-parse-lax-1.0.0" = { @@ -5608,7 +5401,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/url-parse-lax/-/url-parse-lax-1.0.0.tgz"; - sha1 = "7af8f303645e9bd79a272e7a14ac68bc0609da73"; + sha512 = "BVA4lR5PIviy2PMseNd2jbFQ+jwSwQGdJejf5ctd1rEXt0Ypd7yanUK9+lYechVlN5VaTJGsu2U/3MDDu6KgBA=="; }; }; "url-to-options-1.0.1" = { @@ -5617,7 +5410,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/url-to-options/-/url-to-options-1.0.1.tgz"; - sha1 = "1505a03a289a48cbd7a434efbaeec5055f5633a9"; + sha512 = "0kQLIzG4fdk/G5NONku64rSH/x32NOA39LVQqlK8Le6lvTF6GGRJpqaQFGgU+CLwySIqBSMdwYM0sYcW9f6P4A=="; }; }; "use-3.1.1" = { @@ -5629,13 +5422,22 @@ let sha512 = "cwESVXlO3url9YWlFW/TA9cshCEhtu7IKJ/p5soJ/gGpj7vbvFrAY/eIioQ6Dw23KjZhYgiIo8HOs1nQ2vr/oQ=="; }; }; + "utf-8-validate-6.0.3" = { + name = "utf-8-validate"; + packageName = "utf-8-validate"; + version = "6.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/utf-8-validate/-/utf-8-validate-6.0.3.tgz"; + sha512 = "uIuGf9TWQ/y+0Lp+KGZCMuJWc3N9BHA+l/UmHd/oUHwJJDeysyTRxNQVkbzsIWfGFbRe3OcgML/i0mvVRPOyDA=="; + }; + }; "util-deprecate-1.0.2" = { name = "util-deprecate"; packageName = "util-deprecate"; version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/util-deprecate/-/util-deprecate-1.0.2.tgz"; - sha1 = "450d4dc9fa70de732762fbd2d4a28981419a0ccf"; + sha512 = "EPD5q1uXyFxJpCrLnCc1nHnq3gOa6DZBocAIiI2TaSCA7VCJ1UJDMagCzIkXNsUYfD1daK//LTEQ8xiIbrHtcw=="; }; }; "uuid-3.4.0" = { @@ -5647,15 +5449,6 @@ let sha512 = "HjSDRw6gZE5JMggctHBcjVak08+KEVhSIiDzFnT9S9aegmp85S/bReBVTb4QTFaRNptJ9kuYaNhnbNEOkbKb/A=="; }; }; - "v8-compile-cache-2.3.0" = { - name = "v8-compile-cache"; - packageName = "v8-compile-cache"; - version = "2.3.0"; - src = fetchurl { - url = "https://registry.npmjs.org/v8-compile-cache/-/v8-compile-cache-2.3.0.tgz"; - sha512 = "l8lCEmLcLYZh4nbunNZvQCJc5pv7+RCwa8q/LdUx8u7lsWvPDKmpodJAJNwkAhJC//dFY48KuIEmjtd4RViDrA=="; - }; - }; "v8flags-3.2.0" = { name = "v8flags"; packageName = "v8flags"; @@ -5680,7 +5473,7 @@ let version = "3.0.0"; src = fetchurl { url = "https://registry.npmjs.org/value-or-function/-/value-or-function-3.0.0.tgz"; - sha1 = "1c243a50b595c1be54a754bfece8563b9ff8d813"; + sha512 = "jdBB2FrWvQC/pnPtIqcLsMaQgjhdb6B7tk1MMyTKapox+tQZbdRP4uLxu/JY0t7fbfDCUMnuelzEYv5GsxHhdg=="; }; }; "verror-1.10.0" = { @@ -5689,7 +5482,7 @@ let version = "1.10.0"; src = fetchurl { url = "https://registry.npmjs.org/verror/-/verror-1.10.0.tgz"; - sha1 = "3a105ca17053af55d6e270c1f8288682e18da400"; + sha512 = "ZZKSmDAEFOijERBLkmYfJ+vmk3w+7hOLYDNkRCuRuMJGEmqYNCNLyBBFwWKVMhfwaEF3WOd0Zlw86U/WC/+nYw=="; }; }; "vinyl-2.2.1" = { @@ -5716,7 +5509,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/vinyl-sourcemap/-/vinyl-sourcemap-1.1.0.tgz"; - sha1 = "92a800593a38703a8cdb11d8b300ad4be63b3e16"; + sha512 = "NiibMgt6VJGJmyw7vtzhctDcfKch4e4n9TBeoWlirb7FMg9/1Ov9k+A5ZRAtywBpRPiyECvQRQllYM8dECegVA=="; }; }; "which-1.3.1" = { @@ -5743,16 +5536,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/which-module/-/which-module-1.0.0.tgz"; - sha1 = "bba63ca861948994ff307736089e3b96026c2a4f"; - }; - }; - "wide-align-1.1.3" = { - name = "wide-align"; - packageName = "wide-align"; - version = "1.1.3"; - src = fetchurl { - url = "https://registry.npmjs.org/wide-align/-/wide-align-1.1.3.tgz"; - sha512 = "QGkOQc8XL6Bt5PwnsExKBPuMKBxnGxWWW3fU55Xt4feHozMUhdUMaBCk290qpm/wG5u/RSKzwdAC4i51YigihA=="; + sha512 = "F6+WgncZi/mJDrammbTuHe1q0R5hOXv/mBaiNA2TCNT/LTHusX0V+CJnj9XT8ki5ln2UZyyddDgHfCzyrOH7MQ=="; }; }; "window-size-0.1.4" = { @@ -5761,7 +5545,7 @@ let version = "0.1.4"; src = fetchurl { url = "https://registry.npmjs.org/window-size/-/window-size-0.1.4.tgz"; - sha1 = "f8e1aa1ee5a53ec5bf151ffa09742a6ad7697876"; + sha512 = "2thx4pB0cV3h+Bw7QmMXcEbdmOzv9t0HFplJH/Lz6yu60hXYy5RT8rUu+wlIreVxWsGN20mo+MHeCSfUpQBwPw=="; }; }; "winreg-1.2.4" = { @@ -5770,7 +5554,7 @@ let version = "1.2.4"; src = fetchurl { url = "https://registry.npmjs.org/winreg/-/winreg-1.2.4.tgz"; - sha1 = "ba065629b7a925130e15779108cf540990e98d1b"; + sha512 = "IHpzORub7kYlb8A43Iig3reOvlcBJGX9gZ0WycHhghHtA65X0LYnMRuJs+aH1abVnMJztQkvQNlltnbPi5aGIA=="; }; }; "word-wrap-1.2.3" = { @@ -5782,13 +5566,13 @@ let sha512 = "Hz/mrNwitNRh/HUAtM/VT/5VH+ygD6DV7mYKZAtHOrbs8U7lvPS6xf7EJKMF0uW1KJCl0H701g3ZGus+muE5vQ=="; }; }; - "workerpool-6.1.0" = { + "workerpool-6.2.1" = { name = "workerpool"; packageName = "workerpool"; - version = "6.1.0"; + version = "6.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/workerpool/-/workerpool-6.1.0.tgz"; - sha512 = "toV7q9rWNYha963Pl/qyeZ6wG+3nnsyvolaNUS8+R5Wtw6qJPTxIlOP1ZSvcGhEJw+l3HMMmtiNo9Gl61G4GVg=="; + url = "https://registry.npmjs.org/workerpool/-/workerpool-6.2.1.tgz"; + sha512 = "ILEIE97kDZvF9Wb9f6h5aXK4swSlKGUcOEGiIYb2OOu/IrDU9iwj0fD//SsA6E5ibwJxpEvhullJY4Sl4GcpAw=="; }; }; "wrap-ansi-2.1.0" = { @@ -5797,7 +5581,7 @@ let version = "2.1.0"; src = fetchurl { url = "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-2.1.0.tgz"; - sha1 = "d8fc3d284dd05794fe84973caecdd1cf824fdd85"; + sha512 = "vAaEaDM946gbNpH5pLVNR+vX2ht6n0Bt3GXwVB1AuAqZosOvHNF3P7wDnh8KLkSqgUh0uh77le7Owgoz+Z9XBw=="; }; }; "wrap-ansi-7.0.0" = { @@ -5815,34 +5599,16 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz"; - sha1 = "b5243d8f3ec1aa35f1364605bc0d1036e30ab69f"; + sha512 = "l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ=="; }; }; - "write-1.0.3" = { - name = "write"; - packageName = "write"; - version = "1.0.3"; + "ws-8.13.0" = { + name = "ws"; + packageName = "ws"; + version = "8.13.0"; src = fetchurl { - url = "https://registry.npmjs.org/write/-/write-1.0.3.tgz"; - sha512 = "/lg70HAjtkUgWPVZhZcm+T4hkL8Zbtp1nFNOn3lRrxnlv50SRBv7cR7RqR+GMsd3hUXy9hWBo4CHTbFTcOYwig=="; - }; - }; - "xml2js-0.4.23" = { - name = "xml2js"; - packageName = "xml2js"; - version = "0.4.23"; - src = fetchurl { - url = "https://registry.npmjs.org/xml2js/-/xml2js-0.4.23.tgz"; - sha512 = "ySPiMjM0+pLDftHgXY4By0uswI3SPKLDw/i3UXbnO8M/p28zqexCUoPmQFrYD+/1BzhGJSs2i1ERWKJAtiLrug=="; - }; - }; - "xmlbuilder-11.0.1" = { - name = "xmlbuilder"; - packageName = "xmlbuilder"; - version = "11.0.1"; - src = fetchurl { - url = "https://registry.npmjs.org/xmlbuilder/-/xmlbuilder-11.0.1.tgz"; - sha512 = "fDlsI/kFEx7gLvbecc0/ohLG50fugQp8ryHzMTuW9vSa1GJ0XYWKnhsUx7oie3G98+r56aTQIUB4kht42R3JvA=="; + url = "https://registry.npmjs.org/ws/-/ws-8.13.0.tgz"; + sha512 = "x9vcZYTrFPC7aSIbj7sRCYo7L/Xb8Iy+pW0ng0wt2vCJv7M9HOMy0UoN3rr+IFC7hb7vXoqS+P9ktyLLLhO+LA=="; }; }; "xtend-4.0.2" = { @@ -5881,13 +5647,22 @@ let sha512 = "D1mvvtDG0L5ft/jGWkLpG1+m0eQxOfaBvTNELraWj22wSVUMWxZUvYgJYcKh6jGGIkJFhH4IZPQhR4TKpc8mBw=="; }; }; + "yargs-17.7.2" = { + name = "yargs"; + packageName = "yargs"; + version = "17.7.2"; + src = fetchurl { + url = "https://registry.npmjs.org/yargs/-/yargs-17.7.2.tgz"; + sha512 = "7dSzzRQ++CKnNI/krKnYRV7JKKPUXMEh61soaHKg9mrWEhzFWhFnxPxGl+69cD1Ou63C13NUPCnmIcrvqCuM6w=="; + }; + }; "yargs-3.32.0" = { name = "yargs"; packageName = "yargs"; version = "3.32.0"; src = fetchurl { url = "https://registry.npmjs.org/yargs/-/yargs-3.32.0.tgz"; - sha1 = "03088e9ebf9e756b69751611d2a5ef591482c995"; + sha512 = "ONJZiimStfZzhKamYvR/xvmgW3uEkAUFSP91y2caTEPhzF6uP2JfPiVZcq66b/YR0C3uitxSV7+T1x8p5bkmMg=="; }; }; "yargs-7.1.2" = { @@ -5908,13 +5683,13 @@ let sha512 = "WOkpgNhPTlE73h4VFAFsOnomJVaovO8VqLDzy5saChRBFQFBoMYirowyW+Q9HB4HFF4Z7VZTiG3iSzJJA29yRA=="; }; }; - "yargs-parser-20.2.9" = { + "yargs-parser-21.1.1" = { name = "yargs-parser"; packageName = "yargs-parser"; - version = "20.2.9"; + version = "21.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/yargs-parser/-/yargs-parser-20.2.9.tgz"; - sha512 = "y11nGElTIV+CT3Zv9t7VKl+Q3hTQoT9a1Qzezhhl6Rp21gJ/IVTW7Z3y9EWXhuUBC2Shnf+DX0antecpAwSP8w=="; + url = "https://registry.npmjs.org/yargs-parser/-/yargs-parser-21.1.1.tgz"; + sha512 = "tVpsJW7DdjecAiFpbIB1e3qxIQsE6NoPc5/eTdrbbIC4h0LVsWhnoa3g+m2HclBIujHzsxZ4VJVA+GUuc2/LBw=="; }; }; "yargs-parser-5.0.1" = { @@ -5941,7 +5716,7 @@ let version = "2.10.0"; src = fetchurl { url = "https://registry.npmjs.org/yauzl/-/yauzl-2.10.0.tgz"; - sha1 = "c7eb17c93e112cb1086fa6d8e51fb0667b79a5f9"; + sha512 = "p4a9I6X6nu6IhoGmBqAcbJy1mlC4j27vEPZX9F4L4/vZT3Lyq1VkFHw/V/PUcB9Buo+DG3iHkT0x3Qya58zc3g=="; }; }; "yocto-queue-0.1.0" = { @@ -5956,30 +5731,25 @@ let }; in { - "onlykey-git+https://github.com/trustcrypto/OnlyKey-App.git#v5.3.4" = nodeEnv.buildNodePackage { + "onlykey-git+https://github.com/trustcrypto/OnlyKey-App.git#v5.5.0" = nodeEnv.buildNodePackage { name = "OnlyKey"; packageName = "OnlyKey"; - version = "5.3.4"; + version = "5.5.0"; src = fetchgit { url = "https://github.com/trustcrypto/OnlyKey-App.git"; - rev = "da67e5088514c919a3a0a885ed68ca19a904da13"; - sha256 = "9e3f434932483a8709227ce6b51a746f38a647b53ef6b1ee5b85b68855c412a7"; + rev = "5401c2966638d04c19035fff85e95bfd3bce5511"; + sha256 = "f0c49dafe8210813de1a9eb7622d53fa0c84c17384516defaa2f42ac29a8cebc"; }; dependencies = [ - sources."@babel/code-frame-7.16.7" - sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.12" // { + sources."@eslint-community/eslint-utils-4.4.0" + sources."@eslint-community/regexpp-4.5.1" + sources."@eslint/eslintrc-2.0.3" + sources."@eslint/js-8.42.0" + (sources."@gulp-sourcemaps/identity-map-2.0.1" // { dependencies = [ - sources."ansi-styles-3.2.1" - sources."chalk-2.4.2" - sources."supports-color-5.5.0" - ]; - }) - (sources."@gulp-sourcemaps/identity-map-1.0.2" // { - dependencies = [ - sources."acorn-5.7.4" - sources."normalize-path-2.1.1" + sources."acorn-6.4.2" sources."source-map-0.6.1" + sources."through2-3.0.2" ]; }) (sources."@gulp-sourcemaps/map-sources-1.0.0" // { @@ -5987,17 +5757,17 @@ in sources."normalize-path-2.1.1" ]; }) - sources."@ungap/promise-all-settled-1.1.2" + sources."@humanwhocodes/config-array-0.11.10" + sources."@humanwhocodes/module-importer-1.0.1" + sources."@humanwhocodes/object-schema-1.2.1" + sources."@nodelib/fs.scandir-2.1.5" + sources."@nodelib/fs.stat-2.0.5" + sources."@nodelib/fs.walk-1.2.8" sources."abbrev-1.1.1" - sources."acorn-7.4.1" + sources."acorn-8.8.2" sources."acorn-jsx-5.3.2" sources."ajv-6.12.6" sources."ansi-colors-1.1.0" - (sources."ansi-escapes-4.3.2" // { - dependencies = [ - sources."type-fest-0.21.3" - ]; - }) sources."ansi-gray-0.1.1" sources."ansi-regex-2.1.1" sources."ansi-styles-2.2.1" @@ -6010,7 +5780,7 @@ in sources."append-buffer-1.0.2" sources."applescript-1.0.0" sources."archy-1.0.0" - sources."argparse-1.0.10" + sources."argparse-2.0.1" sources."arr-diff-4.0.0" sources."arr-filter-1.1.2" sources."arr-flatten-1.1.0" @@ -6038,15 +5808,14 @@ in sources."assert-plus-1.0.0" sources."assertion-error-1.1.0" sources."assign-symbols-1.0.0" - sources."astral-regex-1.0.0" sources."async-done-1.3.2" - sources."async-each-1.0.3" + sources."async-each-1.0.6" sources."async-settle-1.0.0" sources."asynckit-0.4.0" sources."atob-2.1.2" - sources."auto-launch-5.0.5" + sources."auto-launch-5.0.6" sources."aws-sign2-0.7.0" - sources."aws4-1.11.0" + sources."aws4-1.12.0" sources."bach-1.2.0" sources."balanced-match-1.0.2" (sources."base-0.11.2" // { @@ -6071,22 +5840,22 @@ in sources."buffer-alloc-1.2.0" sources."buffer-alloc-unsafe-1.1.0" sources."buffer-crc32-0.2.13" - sources."buffer-equal-1.0.0" + sources."buffer-equal-1.0.1" sources."buffer-fill-1.0.0" sources."buffer-from-1.1.2" sources."buffers-0.1.1" + sources."bufferutil-4.0.7" sources."cache-base-1.0.1" sources."call-bind-1.0.2" sources."callsites-3.1.0" sources."camelcase-2.1.1" - sources."capture-stack-trace-1.0.1" + sources."capture-stack-trace-1.0.2" sources."caseless-0.12.0" sources."caw-2.0.1" - sources."chai-4.3.6" + sources."chai-4.3.7" sources."chai-as-promised-7.1.1" sources."chainsaw-0.1.0" sources."chalk-1.1.3" - sources."chardet-0.7.0" sources."check-error-1.0.2" (sources."chokidar-2.1.8" // { dependencies = [ @@ -6114,8 +5883,6 @@ in sources."kind-of-5.1.0" ]; }) - sources."cli-cursor-3.1.0" - sources."cli-width-3.0.0" sources."cliui-3.2.0" sources."clone-2.1.2" sources."clone-buffer-1.0.0" @@ -6124,8 +5891,8 @@ in sources."code-point-at-1.1.0" sources."collection-map-1.0.0" sources."collection-visit-1.0.0" - sources."color-convert-1.9.3" - sources."color-name-1.1.3" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" sources."color-support-1.1.3" sources."combined-stream-1.0.8" sources."commander-2.20.3" @@ -6133,11 +5900,7 @@ in sources."concat-map-0.0.1" sources."concat-stream-1.6.2" sources."config-chain-1.1.13" - (sources."convert-source-map-1.8.0" // { - dependencies = [ - sources."safe-buffer-5.1.2" - ]; - }) + sources."convert-source-map-1.9.0" sources."copy-descriptor-0.1.1" (sources."copy-props-2.0.5" // { dependencies = [ @@ -6146,10 +5909,11 @@ in }) sources."core-util-is-1.0.3" sources."create-error-class-3.0.2" - sources."cross-spawn-6.0.5" - (sources."css-2.2.4" // { + sources."cross-spawn-7.0.3" + (sources."css-3.0.0" // { dependencies = [ sources."source-map-0.6.1" + sources."source-map-resolve-0.6.0" ]; }) sources."d-1.0.1" @@ -6162,7 +5926,7 @@ in ]; }) sources."decamelize-1.2.0" - sources."decode-uri-component-0.2.0" + sources."decode-uri-component-0.2.2" sources."decompress-4.2.1" sources."decompress-tar-4.1.1" (sources."decompress-tarbz2-4.1.1" // { @@ -6183,7 +5947,7 @@ in sources."string_decoder-0.10.31" ]; }) - sources."deep-eql-3.0.1" + sources."deep-eql-4.1.3" sources."deep-is-0.1.4" (sources."default-compare-1.0.0" // { dependencies = [ @@ -6191,7 +5955,7 @@ in ]; }) sources."default-resolution-2.0.0" - sources."define-properties-1.1.4" + sources."define-properties-1.2.0" sources."define-property-2.0.2" sources."delayed-stream-1.0.0" sources."detect-file-1.0.0" @@ -6203,45 +5967,35 @@ in sources."get-stream-3.0.0" ]; }) - sources."duplexer3-0.1.4" + sources."duplexer3-0.1.5" sources."duplexify-3.7.1" sources."each-props-1.3.2" sources."ecc-jsbn-0.1.2" sources."emoji-regex-8.0.0" sources."end-of-stream-1.4.4" sources."error-ex-1.3.2" - sources."es5-ext-0.10.61" + sources."es5-ext-0.10.62" sources."es6-iterator-2.0.3" sources."es6-symbol-3.1.3" sources."es6-weak-map-2.0.3" sources."escalade-3.1.1" sources."escape-string-regexp-1.0.5" - (sources."eslint-6.8.0" // { + (sources."eslint-8.42.0" // { dependencies = [ - sources."ansi-regex-4.1.1" - sources."ansi-styles-3.2.1" - sources."chalk-2.4.2" - sources."semver-6.3.0" - sources."strip-ansi-5.2.0" - sources."supports-color-5.5.0" - ]; - }) - sources."eslint-scope-5.1.1" - sources."eslint-utils-1.4.3" - sources."eslint-visitor-keys-1.3.0" - sources."espree-6.2.1" - sources."esprima-4.0.1" - (sources."esquery-1.4.0" // { - dependencies = [ - sources."estraverse-5.3.0" - ]; - }) - (sources."esrecurse-4.3.0" // { - dependencies = [ - sources."estraverse-5.3.0" + sources."ansi-regex-5.0.1" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.2" + sources."escape-string-regexp-4.0.0" + sources."strip-ansi-6.0.1" + sources."supports-color-7.2.0" ]; }) - sources."estraverse-4.3.0" + sources."eslint-scope-7.2.0" + sources."eslint-visitor-keys-3.4.1" + sources."espree-9.5.2" + sources."esquery-1.5.0" + sources."esrecurse-4.3.0" + sources."estraverse-5.3.0" sources."esutils-2.0.3" sources."event-emitter-0.3.5" (sources."expand-brackets-2.1.4" // { @@ -6273,9 +6027,9 @@ in ]; }) sources."expand-tilde-2.0.2" - (sources."ext-1.6.0" // { + (sources."ext-1.7.0" // { dependencies = [ - sources."type-2.6.0" + sources."type-2.7.2" ]; }) sources."extend-3.0.2" @@ -6284,7 +6038,6 @@ in sources."is-extendable-1.0.1" ]; }) - sources."external-editor-3.1.0" (sources."extglob-2.0.4" // { dependencies = [ sources."define-property-1.0.0" @@ -6296,9 +6049,9 @@ in sources."fast-deep-equal-3.1.3" sources."fast-json-stable-stringify-2.1.0" sources."fast-levenshtein-2.0.6" + sources."fastq-1.15.0" sources."fd-slicer-1.1.0" - sources."figures-3.2.0" - sources."file-entry-cache-5.0.1" + sources."file-entry-cache-6.0.1" sources."file-exists-2.0.0" sources."file-type-5.2.0" sources."file-uri-to-path-1.0.0" @@ -6310,17 +6063,17 @@ in sources."extend-shallow-2.0.1" ]; }) - sources."find-up-1.1.2" + sources."find-up-5.0.0" sources."findup-sync-3.0.0" sources."fined-1.2.0" sources."flagged-respawn-1.0.1" sources."flat-5.0.2" - (sources."flat-cache-2.0.1" // { + (sources."flat-cache-3.0.4" // { dependencies = [ - sources."rimraf-2.6.3" + sources."rimraf-3.0.2" ]; }) - sources."flatted-2.0.2" + sources."flatted-3.2.7" sources."flush-write-stream-1.1.1" sources."for-in-1.0.2" sources."for-own-1.0.0" @@ -6329,15 +6082,19 @@ in sources."fragment-cache-0.2.1" sources."fs-constants-1.0.0" sources."fs-extra-7.0.1" - sources."fs-jetpack-4.3.1" + (sources."fs-jetpack-5.1.0" // { + dependencies = [ + sources."brace-expansion-2.0.1" + sources."minimatch-5.1.6" + ]; + }) sources."fs-mkdirp-stream-1.0.0" sources."fs.realpath-1.0.0" sources."fsevents-1.2.13" sources."function-bind-1.1.1" - sources."functional-red-black-tree-1.0.1" sources."get-caller-file-1.0.3" sources."get-func-name-2.0.0" - sources."get-intrinsic-1.1.1" + sources."get-intrinsic-1.2.1" sources."get-proxy-2.1.0" sources."get-stream-2.3.1" sources."get-value-2.0.6" @@ -6350,7 +6107,7 @@ in sources."is-glob-2.0.1" ]; }) - sources."glob-parent-5.1.2" + sources."glob-parent-6.0.2" (sources."glob-stream-6.1.0" // { dependencies = [ sources."glob-parent-3.1.0" @@ -6359,16 +6116,20 @@ in }) sources."glob-watcher-5.0.5" sources."global-modules-1.0.0" - sources."global-prefix-1.0.2" - sources."globals-12.4.0" + (sources."global-prefix-1.0.2" // { + dependencies = [ + sources."which-1.3.1" + ]; + }) + sources."globals-13.20.0" sources."glogg-1.0.2" (sources."got-6.7.1" // { dependencies = [ sources."get-stream-3.0.0" ]; }) - sources."graceful-fs-4.2.10" - sources."growl-1.10.5" + sources."graceful-fs-4.2.11" + sources."graphemer-1.4.0" sources."gulp-4.0.2" (sources."gulp-cli-2.3.0" // { dependencies = [ @@ -6376,9 +6137,9 @@ in sources."yargs-7.1.2" ]; }) - (sources."gulp-sourcemaps-2.6.5" // { + (sources."gulp-sourcemaps-3.0.0" // { dependencies = [ - sources."acorn-5.7.4" + sources."acorn-6.4.2" sources."source-map-0.6.1" ]; }) @@ -6387,8 +6148,9 @@ in sources."har-validator-5.1.5" sources."has-1.0.3" sources."has-ansi-2.0.0" - sources."has-flag-3.0.0" + sources."has-flag-4.0.0" sources."has-property-descriptors-1.0.0" + sources."has-proto-1.0.1" sources."has-symbol-support-x-1.4.2" sources."has-symbols-1.0.3" sources."has-to-string-tag-x-1.4.1" @@ -6402,29 +6164,14 @@ in sources."homedir-polyfill-1.0.3" sources."hosted-git-info-2.8.9" sources."http-signature-1.2.0" - sources."iconv-lite-0.4.24" sources."ieee754-1.2.1" - sources."ignore-4.0.6" + sources."ignore-5.2.4" sources."immediate-3.0.6" sources."import-fresh-3.3.0" sources."imurmurhash-0.1.4" sources."inflight-1.0.6" sources."inherits-2.0.4" sources."ini-1.3.8" - (sources."inquirer-7.3.3" // { - dependencies = [ - sources."ansi-regex-5.0.1" - sources."ansi-styles-4.3.0" - sources."chalk-4.1.2" - sources."color-convert-2.0.1" - sources."color-name-1.1.4" - sources."has-flag-4.0.0" - sources."is-fullwidth-code-point-3.0.0" - sources."string-width-4.2.3" - sources."strip-ansi-6.0.1" - sources."supports-color-7.2.0" - ]; - }) sources."interpret-1.4.0" sources."invert-kv-1.0.0" sources."is-absolute-1.0.0" @@ -6432,7 +6179,7 @@ in sources."is-arrayish-0.2.1" sources."is-binary-path-1.0.1" sources."is-buffer-1.1.6" - sources."is-core-module-2.9.0" + sources."is-core-module-2.12.1" sources."is-data-descriptor-1.0.0" sources."is-descriptor-1.0.2" sources."is-dotfile-1.0.3" @@ -6449,6 +6196,7 @@ in ]; }) sources."is-object-1.0.2" + sources."is-path-inside-3.0.3" sources."is-plain-obj-2.1.0" sources."is-plain-object-2.0.4" sources."is-posix-bracket-0.1.1" @@ -6460,6 +6208,7 @@ in sources."is-stream-1.1.0" sources."is-typedarray-1.0.0" sources."is-unc-path-1.0.0" + sources."is-unicode-supported-0.1.0" sources."is-utf8-0.2.1" sources."is-valid-glob-1.0.0" sources."is-windows-1.0.2" @@ -6469,40 +6218,36 @@ in sources."isstream-0.1.2" sources."isurl-1.0.0" sources."js-sha256-0.9.0" - sources."js-tokens-4.0.0" - sources."js-yaml-3.14.1" + sources."js-yaml-4.1.0" sources."jsbn-0.1.1" - sources."json-10.0.0" + sources."json-11.0.0" sources."json-schema-0.4.0" sources."json-schema-traverse-0.4.1" sources."json-stable-stringify-without-jsonify-1.0.1" sources."json-stringify-safe-5.0.1" sources."jsonfile-4.0.0" sources."jsprim-1.4.2" - sources."jszip-3.10.0" + sources."jszip-3.10.1" sources."just-debounce-1.1.0" sources."kind-of-6.0.3" sources."last-run-1.1.1" sources."lazystream-1.0.1" sources."lcid-1.0.0" sources."lead-1.0.0" - sources."levn-0.3.0" + sources."levn-0.4.1" sources."lie-3.3.0" sources."liftoff-3.1.0" sources."load-json-file-1.1.0" sources."locate-path-6.0.0" - sources."lodash-4.17.21" - (sources."log-symbols-4.0.0" // { + sources."lodash.merge-4.6.2" + (sources."log-symbols-4.1.0" // { dependencies = [ sources."ansi-styles-4.3.0" sources."chalk-4.1.2" - sources."color-convert-2.0.1" - sources."color-name-1.1.4" - sources."has-flag-4.0.0" sources."supports-color-7.2.0" ]; }) - sources."loupe-2.3.4" + sources."loupe-2.3.6" sources."lowercase-keys-1.0.1" sources."lru-queue-0.1.0" (sources."make-dir-1.3.0" // { @@ -6525,9 +6270,8 @@ in sources."micromatch-3.1.10" sources."mime-db-1.52.0" sources."mime-types-2.1.35" - sources."mimic-fn-2.1.0" sources."minimatch-3.1.2" - sources."minimist-1.2.6" + sources."minimist-1.2.8" (sources."mixin-deep-1.3.2" // { dependencies = [ sources."is-extendable-1.0.1" @@ -6535,47 +6279,51 @@ in }) sources."mkdirp-0.5.6" sources."mkpath-0.1.0" - (sources."mocha-8.4.0" // { + (sources."mocha-10.2.0" // { dependencies = [ sources."ansi-colors-4.1.1" - sources."anymatch-3.1.2" - sources."argparse-2.0.1" + sources."ansi-regex-5.0.1" + sources."ansi-styles-4.3.0" + sources."anymatch-3.1.3" sources."binary-extensions-2.2.0" + sources."brace-expansion-2.0.1" sources."braces-3.0.2" - sources."chokidar-3.5.1" - (sources."debug-4.3.1" // { - dependencies = [ - sources."ms-2.1.2" - ]; - }) + sources."chokidar-3.5.3" + sources."cliui-7.0.4" sources."escape-string-regexp-4.0.0" sources."fill-range-7.0.1" - sources."find-up-5.0.0" sources."fsevents-2.3.2" - sources."glob-7.1.6" - sources."has-flag-4.0.0" + sources."get-caller-file-2.0.5" + (sources."glob-7.2.0" // { + dependencies = [ + sources."minimatch-3.1.2" + ]; + }) + sources."glob-parent-5.1.2" sources."is-binary-path-2.1.0" + sources."is-fullwidth-code-point-3.0.0" sources."is-number-7.0.0" - sources."js-yaml-4.0.0" - sources."minimatch-3.0.4" + sources."minimatch-5.0.1" sources."ms-2.1.3" - sources."path-exists-4.0.0" - sources."readdirp-3.5.0" + sources."readdirp-3.6.0" + sources."string-width-4.2.3" + sources."strip-ansi-6.0.1" sources."supports-color-8.1.1" sources."to-regex-range-5.0.1" - sources."which-2.0.2" + sources."wrap-ansi-7.0.0" + sources."y18n-5.0.8" + sources."yargs-16.2.0" sources."yargs-parser-20.2.4" ]; }) sources."ms-2.1.2" sources."mute-stdout-1.0.1" - sources."mute-stream-0.0.8" - sources."nan-2.15.0" - sources."nanoid-3.1.20" + sources."nan-2.17.0" + sources."nanoid-3.3.3" sources."nanomatch-1.2.13" sources."natural-compare-1.4.0" sources."next-tick-1.1.0" - sources."nice-try-1.0.5" + sources."node-gyp-build-4.6.0" sources."nopt-3.0.6" sources."normalize-package-data-2.5.0" sources."normalize-path-3.0.0" @@ -6586,7 +6334,7 @@ in ]; }) sources."number-is-nan-1.0.1" - (sources."nw-0.55.0" // { + (sources."nw-0.71.1" // { dependencies = [ sources."yargs-3.32.0" ]; @@ -6626,7 +6374,7 @@ in }) sources."object-keys-1.1.1" sources."object-visit-1.0.1" - sources."object.assign-4.1.2" + sources."object.assign-4.1.4" sources."object.defaults-1.1.0" sources."object.map-1.0.1" (sources."object.omit-2.0.1" // { @@ -6637,11 +6385,9 @@ in sources."object.pick-1.3.0" sources."object.reduce-1.0.1" sources."once-1.4.0" - sources."onetime-5.1.2" - sources."optionator-0.8.3" + sources."optionator-0.9.1" sources."ordered-read-streams-1.0.1" sources."os-locale-1.4.0" - sources."os-tmpdir-1.0.2" sources."p-limit-3.1.0" sources."p-locate-5.0.0" sources."pako-1.0.11" @@ -6658,9 +6404,9 @@ in sources."parse-passwd-1.0.0" sources."pascalcase-0.1.1" sources."path-dirname-1.0.2" - sources."path-exists-2.1.0" + sources."path-exists-4.0.0" sources."path-is-absolute-1.0.1" - sources."path-key-2.0.1" + sources."path-key-3.1.1" sources."path-parse-1.0.7" sources."path-root-0.1.1" sources."path-root-regex-0.1.2" @@ -6668,24 +6414,31 @@ in sources."pathval-1.1.1" sources."pend-1.2.0" sources."performance-now-2.1.0" + sources."picocolors-0.2.1" sources."picomatch-2.3.1" sources."pify-2.3.0" sources."pinkie-2.0.4" sources."pinkie-promise-2.0.1" sources."posix-character-classes-0.1.1" - sources."prelude-ls-1.1.2" + (sources."postcss-7.0.39" // { + dependencies = [ + sources."source-map-0.6.1" + ]; + }) + sources."prelude-ls-1.2.1" sources."prepend-http-1.0.4" sources."preserve-0.2.0" sources."pretty-hrtime-1.0.3" sources."process-nextick-args-2.0.1" sources."progress-2.0.3" sources."proto-list-1.2.4" - sources."psl-1.8.0" + sources."psl-1.9.0" sources."pump-2.0.1" sources."pumpify-1.5.1" - sources."punycode-2.1.1" + sources."punycode-2.3.0" sources."q-1.5.1" sources."qs-6.5.3" + sources."queue-microtask-1.2.3" (sources."randomatic-3.1.1" // { dependencies = [ sources."is-number-4.0.0" @@ -6693,8 +6446,13 @@ in }) sources."randombytes-2.1.0" sources."read-pkg-1.1.0" - sources."read-pkg-up-1.0.1" - (sources."readable-stream-2.3.7" // { + (sources."read-pkg-up-1.0.1" // { + dependencies = [ + sources."find-up-1.1.2" + sources."path-exists-2.1.0" + ]; + }) + (sources."readable-stream-2.3.8" // { dependencies = [ sources."safe-buffer-5.1.2" ]; @@ -6703,7 +6461,6 @@ in sources."rechoir-0.6.2" sources."regex-cache-0.4.4" sources."regex-not-1.0.2" - sources."regexpp-2.0.1" sources."remove-bom-buffer-3.0.0" sources."remove-bom-stream-1.2.0" sources."remove-trailing-separator-1.1.0" @@ -6714,29 +6471,23 @@ in sources."request-2.88.2" sources."require-directory-2.1.1" sources."require-main-filename-1.0.1" - sources."resolve-1.22.0" + sources."resolve-1.22.3" sources."resolve-dir-1.0.1" sources."resolve-from-4.0.0" sources."resolve-options-1.1.0" sources."resolve-url-0.2.1" - sources."restore-cursor-3.1.0" sources."ret-0.1.15" + sources."reusify-1.0.4" sources."rimraf-2.7.1" - sources."run-async-2.4.1" - sources."rxjs-6.6.7" + sources."run-parallel-1.2.0" sources."safe-buffer-5.2.1" sources."safe-regex-1.1.0" sources."safer-buffer-2.1.2" - sources."sax-1.2.4" sources."seek-bzip-1.0.6" - (sources."selenium-webdriver-3.6.0" // { - dependencies = [ - sources."tmp-0.0.30" - ]; - }) + sources."selenium-webdriver-4.9.2" sources."semver-5.7.1" sources."semver-greatest-satisfied-range-1.1.0" - sources."serialize-javascript-5.0.1" + sources."serialize-javascript-6.0.0" sources."set-blocking-2.0.0" (sources."set-value-2.0.1" // { dependencies = [ @@ -6744,15 +6495,8 @@ in ]; }) sources."setimmediate-1.0.5" - sources."shebang-command-1.2.0" - sources."shebang-regex-1.0.0" - sources."signal-exit-3.0.7" - (sources."slice-ansi-2.1.0" // { - dependencies = [ - sources."ansi-styles-3.2.1" - sources."is-fullwidth-code-point-2.0.0" - ]; - }) + sources."shebang-command-2.0.0" + sources."shebang-regex-3.0.0" (sources."snapdragon-0.8.2" // { dependencies = [ sources."debug-2.6.9" @@ -6787,12 +6531,11 @@ in sources."source-map-resolve-0.5.3" sources."source-map-url-0.4.1" sources."sparkles-1.0.1" - sources."spdx-correct-3.1.1" + sources."spdx-correct-3.2.0" sources."spdx-exceptions-2.3.0" sources."spdx-expression-parse-3.0.1" - sources."spdx-license-ids-3.0.11" + sources."spdx-license-ids-3.0.13" sources."split-string-3.1.0" - sources."sprintf-js-1.0.3" sources."sshpk-1.17.0" sources."stack-trace-0.0.10" (sources."static-extend-0.1.2" // { @@ -6829,15 +6572,6 @@ in sources."supports-color-2.0.0" sources."supports-preserve-symlinks-flag-1.0.0" sources."sver-compat-1.5.0" - (sources."table-5.4.6" // { - dependencies = [ - sources."ansi-regex-4.1.1" - sources."emoji-regex-7.0.3" - sources."is-fullwidth-code-point-2.0.0" - sources."string-width-3.1.0" - sources."strip-ansi-5.2.0" - ]; - }) sources."tar-stream-1.6.2" sources."text-table-0.2.0" sources."through-2.3.8" @@ -6846,7 +6580,11 @@ in sources."time-stamp-1.1.0" sources."timed-out-4.0.1" sources."timers-ext-0.1.7" - sources."tmp-0.0.33" + (sources."tmp-0.2.1" // { + dependencies = [ + sources."rimraf-3.0.2" + ]; + }) sources."to-absolute-glob-2.0.2" sources."to-buffer-1.1.1" (sources."to-object-path-0.3.0" // { @@ -6866,13 +6604,12 @@ in sources."traverse-0.3.9" sources."tree-kill-1.2.2" sources."trim-repeated-1.0.0" - sources."tslib-1.14.1" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" sources."type-1.2.0" - sources."type-check-0.3.2" + sources."type-check-0.4.0" sources."type-detect-4.0.8" - sources."type-fest-0.8.1" + sources."type-fest-0.20.2" sources."typedarray-0.0.6" sources."unbzip2-stream-1.4.3" sources."unc-path-regex-0.1.2" @@ -6903,9 +6640,9 @@ in sources."url-parse-lax-1.0.0" sources."url-to-options-1.0.1" sources."use-3.1.1" + sources."utf-8-validate-6.0.3" sources."util-deprecate-1.0.2" sources."uuid-3.4.0" - sources."v8-compile-cache-2.3.0" sources."v8flags-3.2.0" sources."validate-npm-package-license-3.0.4" sources."value-or-function-3.0.0" @@ -6921,34 +6658,29 @@ in sources."normalize-path-2.1.1" ]; }) - sources."which-1.3.1" + sources."which-2.0.2" sources."which-module-1.0.0" - sources."wide-align-1.1.3" sources."window-size-0.1.4" sources."winreg-1.2.4" sources."word-wrap-1.2.3" - sources."workerpool-6.1.0" + sources."workerpool-6.2.1" sources."wrap-ansi-2.1.0" sources."wrappy-1.0.2" - sources."write-1.0.3" - sources."xml2js-0.4.23" - sources."xmlbuilder-11.0.1" + sources."ws-8.13.0" sources."xtend-4.0.2" sources."y18n-3.2.2" - (sources."yargs-16.2.0" // { + (sources."yargs-17.7.2" // { dependencies = [ sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" - sources."cliui-7.0.4" - sources."color-convert-2.0.1" - sources."color-name-1.1.4" + sources."cliui-8.0.1" sources."get-caller-file-2.0.5" sources."is-fullwidth-code-point-3.0.0" sources."string-width-4.2.3" sources."strip-ansi-6.0.1" sources."wrap-ansi-7.0.0" sources."y18n-5.0.8" - sources."yargs-parser-20.2.9" + sources."yargs-parser-21.1.1" ]; }) (sources."yargs-parser-5.0.1" // { diff --git a/pkgs/tools/security/onlykey/onlykey.nix b/pkgs/tools/security/onlykey/onlykey.nix index f8182c1e6e59e..22e8b62607378 100644 --- a/pkgs/tools/security/onlykey/onlykey.nix +++ b/pkgs/tools/security/onlykey/onlykey.nix @@ -2,7 +2,7 @@ {pkgs ? import <nixpkgs> { inherit system; - }, system ? builtins.currentSystem, nodejs ? pkgs."nodejs_14"}: + }, system ? builtins.currentSystem, nodejs ? pkgs.nodejs_18}: let nodeEnv = import ../../../development/node-packages/node-env.nix { diff --git a/pkgs/tools/security/onlykey/package.json b/pkgs/tools/security/onlykey/package.json index da48ed4218ade..a629a4d7d4954 100644 --- a/pkgs/tools/security/onlykey/package.json +++ b/pkgs/tools/security/onlykey/package.json @@ -1,3 +1,3 @@ [ - {"onlykey": "git+https://github.com/trustcrypto/OnlyKey-App.git#v5.3.4"} + {"onlykey": "git+https://github.com/trustcrypto/OnlyKey-App.git#v5.5.0"} ] diff --git a/pkgs/tools/security/rsign2/default.nix b/pkgs/tools/security/rsign2/default.nix index e83fdc7b2bbbe..86f2d6d843389 100644 --- a/pkgs/tools/security/rsign2/default.nix +++ b/pkgs/tools/security/rsign2/default.nix @@ -5,14 +5,14 @@ rustPlatform.buildRustPackage rec { pname = "rsign2"; - version = "0.6.2"; + version = "0.6.3"; src = fetchCrate { inherit pname version; - hash = "sha256-Ono7cKXccYMmkrlsJ+Z85w8z0fEduuEQhRlHQQk0vzU="; + hash = "sha256-bJeM1HTzmC8QZ488PpqQ0qqdFg1/rjPWuTtqo1GXyHM="; }; - cargoHash = "sha256-Yuf4iTWGQp/1ZUVqaR0tKfFxKJ9JEmMLq1LL7gwf6w0="; + cargoHash = "sha256-xqNFJFNV9mIVxzyQvhv5QwHVcXLuH76VYFAsgp5hW+w="; meta = with lib; { description = "A command-line tool to sign files and verify signatures"; diff --git a/pkgs/tools/security/trufflehog/default.nix b/pkgs/tools/security/trufflehog/default.nix index 54b03747adbb6..76b27bfebbf67 100644 --- a/pkgs/tools/security/trufflehog/default.nix +++ b/pkgs/tools/security/trufflehog/default.nix @@ -7,16 +7,16 @@ buildGoModule rec { pname = "trufflehog"; - version = "3.36.0"; + version = "3.39.0"; src = fetchFromGitHub { owner = "trufflesecurity"; repo = "trufflehog"; rev = "refs/tags/v${version}"; - hash = "sha256-Vp6WsbGy5h9Vd41D07KAuXnVE13cxPIQyeHJBqkAps4="; + hash = "sha256-CAYUp/GoGvz/HEVR21Xro50dOefqvNMwo8wo8/MNJko="; }; - vendorHash = "sha256-3096/8s50Xsbn5PryC7mW70Wn7uNFIn1THdOVBw9BHk="; + vendorHash = "sha256-eYUoWBNHoXiFvI1zaZ301KayESJWVqbD3D4NytqcDGk="; ldflags = [ "-s" diff --git a/pkgs/tools/security/uncover/default.nix b/pkgs/tools/security/uncover/default.nix index 475525908fa3e..456c629c774b3 100644 --- a/pkgs/tools/security/uncover/default.nix +++ b/pkgs/tools/security/uncover/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "uncover"; - version = "1.0.4"; + version = "1.0.5"; src = fetchFromGitHub { owner = "projectdiscovery"; repo = pname; rev = "v${version}"; - hash = "sha256-hugGRMxY0cmcfIjUOvmaTCC19VkxODZLwP2lYdrIfo8="; + hash = "sha256-TkNqy5436EH7P7F/kKaFrAuG6D+WwkIJzV5+a/H3aYM="; }; - vendorHash = "sha256-AzIncQtNhzOJDlEXr5tbxXpt6V7RAgoGxks/zZ3Uakw="; + vendorHash = "sha256-P2XlFvFkrmH8ATWP1QXtNsUwCT22j0LmzlMuob6LlmY="; meta = with lib; { description = "API wrapper to search for exposed hosts"; diff --git a/pkgs/tools/security/zgrab2/default.nix b/pkgs/tools/security/zgrab2/default.nix index b8863a6a94e4b..c91c1b876099c 100644 --- a/pkgs/tools/security/zgrab2/default.nix +++ b/pkgs/tools/security/zgrab2/default.nix @@ -5,24 +5,32 @@ buildGoModule rec { pname = "zgrab2"; - version = "20210327-${lib.strings.substring 0 7 rev}"; - rev = "17a5257565c758e2b817511d15476d330be0a17a"; + version = "unstable-2023-03-23"; src = fetchFromGitHub { owner = "zmap"; repo = pname; - inherit rev; - sha256 = "1hxk2jggj8lww97lwmks46i001p5ycnxnck8yya6d0fd3ayxvw2w"; + rev = "911c86f13080ceae98f8d63d1ae0e85c4a8f7f61"; + hash = "sha256-VOWkBM/SziY3jiIaYYWq+LRzG4vKitiscqdIDfRUkYY="; }; - vendorSha256 = "1s0azy5b5hi5h24vs6a9f1n70l980vkid28ihqh10zq6ajmds2z3"; + vendorHash = "sha256-Q3FCqvh4vn64QXqcePhVWTyIHJarI6I4YonH3X/7RhI="; - subPackages = [ "cmd/zgrab2" ]; + patches = [ + # Without this, we get error messages like: + # vendor/golang.org/x/sys/unix/syscall.go:83:16: unsafe.Slice requires go1.17 or later (-lang was set to go1.16; check go.mod) + # The patch was generated by changing "go 1.12" to "go 1.17" and executing `go mod tidy -compat=1.17`. + ./fix-go-version-error.patch + ]; + + subPackages = [ + "cmd/zgrab2" + ]; meta = with lib; { description = "Web application scanner"; homepage = "https://github.com/zmap/zgrab2"; license = with licenses; [ asl20 isc ]; - maintainers = with maintainers; [ fab ]; + maintainers = with maintainers; [ fab juliusrickert ]; }; } diff --git a/pkgs/tools/security/zgrab2/fix-go-version-error.patch b/pkgs/tools/security/zgrab2/fix-go-version-error.patch new file mode 100644 index 0000000000000..797bd542be800 --- /dev/null +++ b/pkgs/tools/security/zgrab2/fix-go-version-error.patch @@ -0,0 +1,46 @@ +diff --git a/go.mod b/go.mod +index 888f10e..5463ef5 100644 +--- a/go.mod ++++ b/go.mod +@@ -1,25 +1,33 @@ + module github.com/zmap/zgrab2 + +-go 1.12 ++go 1.17 + + require ( +- github.com/cespare/xxhash/v2 v2.2.0 // indirect +- github.com/go-kit/kit v0.10.0 // indirect +- github.com/golang/protobuf v1.5.3 // indirect + github.com/hdm/jarm-go v0.0.7 + github.com/prometheus/client_golang v1.14.0 +- github.com/prometheus/common v0.42.0 // indirect +- github.com/prometheus/procfs v0.9.0 // indirect + github.com/sirupsen/logrus v1.9.0 +- github.com/zmap/rc2 v0.0.0-20190804163417-abaa70531248 // indirect + github.com/zmap/zcrypto v0.0.0-20230310154051-c8b263fd8300 + github.com/zmap/zflags v1.4.0-beta.1.0.20200204220219-9d95409821b6 + golang.org/x/crypto v0.7.0 + golang.org/x/net v0.8.0 + golang.org/x/sys v0.6.0 + golang.org/x/text v0.8.0 +- google.golang.org/protobuf v1.30.0 // indirect + gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c + gopkg.in/mgo.v2 v2.0.0-20190816093944-a6b53ec6cb22 + gopkg.in/yaml.v2 v2.4.0 + ) ++ ++require ( ++ github.com/beorn7/perks v1.0.1 // indirect ++ github.com/cespare/xxhash/v2 v2.2.0 // indirect ++ github.com/golang/protobuf v1.5.3 // indirect ++ github.com/kr/pretty v0.2.1 // indirect ++ github.com/kr/text v0.1.0 // indirect ++ github.com/matttproud/golang_protobuf_extensions v1.0.4 // indirect ++ github.com/prometheus/client_model v0.3.0 // indirect ++ github.com/prometheus/common v0.42.0 // indirect ++ github.com/prometheus/procfs v0.9.0 // indirect ++ github.com/weppos/publicsuffix-go v0.30.0 // indirect ++ github.com/zmap/rc2 v0.0.0-20190804163417-abaa70531248 // indirect ++ google.golang.org/protobuf v1.30.0 // indirect ++) diff --git a/pkgs/tools/system/automatic-timezoned/default.nix b/pkgs/tools/system/automatic-timezoned/default.nix index 5c5649a0b8e1c..e907ee9721812 100644 --- a/pkgs/tools/system/automatic-timezoned/default.nix +++ b/pkgs/tools/system/automatic-timezoned/default.nix @@ -5,16 +5,16 @@ rustPlatform.buildRustPackage rec { pname = "automatic-timezoned"; - version = "1.0.92"; + version = "1.0.94"; src = fetchFromGitHub { owner = "maxbrunet"; repo = pname; rev = "v${version}"; - sha256 = "sha256-4axtrwCmtc33pInOsb1W3VIfXmUP59j0mFByCl//1z0="; + sha256 = "sha256-MeglBAWmEqRtWKzvNMixXUPOkGGTFCCyO9A+RE/joTw="; }; - cargoHash = "sha256-V/6SaSk10LLuyPuf3fnyqF2rQlZwG9FRGcQ+3Ao4xQs="; + cargoHash = "sha256-NkGWjvIN6Be12tuDEd7PhdFQgVUwzz2CEg6XASn9DKY="; meta = with lib; { description = "Automatically update system timezone based on location"; diff --git a/pkgs/tools/system/epilys-bb/default.nix b/pkgs/tools/system/epilys-bb/default.nix new file mode 100644 index 0000000000000..169e10bc30c42 --- /dev/null +++ b/pkgs/tools/system/epilys-bb/default.nix @@ -0,0 +1,23 @@ +{ lib, fetchFromGitHub, rustPlatform }: + +rustPlatform.buildRustPackage rec { + pname = "epilys-bb"; + version = "unstable-2020-12-04"; + + src = fetchFromGitHub { + owner = "epilys"; + repo = "bb"; + rev = "c903d4c2975509299fd3d2600a0c4c2102f445d0"; + hash = "sha256-KOXK+1arUWtu/QU7dwXhojIM0faMtwNN3AqVbofq1lY="; + }; + + cargoHash = "sha256-+aCMwKOg+3HDntG14gjJLec8XD51wuTyYyzLjuW6lbY="; + + meta = with lib; { + description = "A clean, simple, and fast process viewer"; + homepage = "https://nessuent.xyz/bb.html"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ cafkafk ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/tools/system/erdtree/default.nix b/pkgs/tools/system/erdtree/default.nix index ea52418ff7853..df573c6a307b7 100644 --- a/pkgs/tools/system/erdtree/default.nix +++ b/pkgs/tools/system/erdtree/default.nix @@ -5,16 +5,16 @@ rustPlatform.buildRustPackage rec { pname = "erdtree"; - version = "3.0.0"; + version = "3.0.1"; src = fetchFromGitHub { owner = "solidiquis"; repo = pname; rev = "v${version}"; - hash = "sha256-7PcDXqizLFNDYVPyUKSk4Eq3Zl+GUZfhrRSYnXVT4EQ="; + hash = "sha256-vaxfW5LuXN/Q8cjJY2V0xTahEtZKYJf+8y2z9Df4WFs="; }; - cargoHash = "sha256-Bcw5f2yLhcm+gh6i2RSVTvZt+xU/PdpaWC3RGVm5tEw="; + cargoHash = "sha256-BB25p9Zy3Z7oztt/AZRNc7mmrSYfVFyUr/t5t2azoYg="; meta = with lib; { description = "File-tree visualizer and disk usage analyzer"; diff --git a/pkgs/tools/system/gdu/default.nix b/pkgs/tools/system/gdu/default.nix index 01c2252713824..1b6f44fd700b7 100644 --- a/pkgs/tools/system/gdu/default.nix +++ b/pkgs/tools/system/gdu/default.nix @@ -9,16 +9,16 @@ buildGoModule rec { pname = "gdu"; - version = "5.23.0"; + version = "5.25.0"; src = fetchFromGitHub { owner = "dundee"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-Uv5wPEGmd2+LVZoSw/K24F3czyjGi6ysQsNtq87p4fg="; + hash = "sha256-TtfTIG0XlEDXVjIZ6Vpy/Z5StXcxyaEocwoe7M75YDw="; }; - vendorHash = "sha256-BQOlp2mjycOSB0qjLuVNo3+n0xqb77IMizUY6Sz94PM="; + vendorHash = "sha256-DkH1H2XvVlDMFuFSbCmhPMC709upPvXhpzlEgNq5zoA="; nativeBuildInputs = [ installShellFiles diff --git a/pkgs/tools/system/gopsuinfo/default.nix b/pkgs/tools/system/gopsuinfo/default.nix index 77cee156d0ea7..beaa9171ee176 100644 --- a/pkgs/tools/system/gopsuinfo/default.nix +++ b/pkgs/tools/system/gopsuinfo/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "gopsuinfo"; - version = "0.1.3"; + version = "0.1.4"; src = fetchFromGitHub { owner = "nwg-piotr"; repo = "gopsuinfo"; rev = "v${version}"; - sha256 = "sha256-e+obIFbhjxsdnyJe3+sUpe9pK9eNTspxNH+Cvf4RBMQ="; + sha256 = "sha256-kivxuy0fdSfF5zAKiflTkYsb6jdeQ75Or7WmbadxsrY="; }; vendorHash = "sha256-S2ZHfrbEjPDweazwWbMbEMcMl/i+8Nru0G0e7RjOJMk="; diff --git a/pkgs/tools/system/monit/default.nix b/pkgs/tools/system/monit/default.nix index a5e0a409ffc98..f1ebd6596c5bf 100644 --- a/pkgs/tools/system/monit/default.nix +++ b/pkgs/tools/system/monit/default.nix @@ -24,16 +24,13 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ bison flex ] ++ lib.optionals stdenv.hostPlatform.isDarwin [ darwin.apple_sdk.frameworks.DiskArbitration + darwin.apple_sdk.frameworks.System ]; buildInputs = [ zlib.dev libxcrypt ] ++ lib.optionals useSSL [ openssl ] ++ lib.optionals usePAM [ pam ]; - preConfigure = lib.optionalString stdenv.hostPlatform.isDarwin '' - substituteInPlace configure --replace "-framework System" "-lSystem" - ''; - configureFlags = [ (lib.withFeature usePAM "pam") ] ++ (if useSSL then [ diff --git a/pkgs/tools/system/pciutils/default.nix b/pkgs/tools/system/pciutils/default.nix index 9b0b09066438f..2dd628f99e945 100644 --- a/pkgs/tools/system/pciutils/default.nix +++ b/pkgs/tools/system/pciutils/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation rec { pname = "pciutils"; - version = "3.9.0"; # with release-date database + version = "3.10.0"; # with release-date database src = fetchurl { url = "mirror://kernel/software/utils/pciutils/pciutils-${version}.tar.xz"; - sha256 = "sha256-zep66XI53uIySaCcaKGaKHo/EJ++ssIy67YWyzhZkBI="; + sha256 = "sha256-I4ouJxZnMOU6F/4Hv60ingf6ObYYEX5ZRLbX7an7sOk="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/tools/system/rex/default.nix b/pkgs/tools/system/rex/default.nix index cf59a22cecee2..f27c2d1fd2afb 100644 --- a/pkgs/tools/system/rex/default.nix +++ b/pkgs/tools/system/rex/default.nix @@ -1,21 +1,50 @@ -{ pkgs, lib, fetchurl, perlPackages, rsync, installShellFiles, ... }: - +{ pkgs, lib, fetchurl, fetchpatch, perl, perlPackages, rsync, which, installShellFiles, ... }: perlPackages.buildPerlPackage rec { pname = "Rex"; - version = "1.13.4"; + version = "1.14.0"; src = fetchurl { url = "mirror://cpan/authors/id/F/FE/FERKI/Rex-${version}.tar.gz"; - sha256 = "a86e9270159b41c9a8fce96f9ddc97c5caa68167ca4ed33e97908bfce17098cf"; + hash = "sha256-RHxJbkaEjKF9lkl6JYFp2pvcKQurRGUU7FfM/m5lSz8="; }; + buildInputs = with perlPackages; [ FileShareDirInstall ParallelForkManager StringEscape TestDeep TestOutput + TestWarnings TestUseAllModules + TestException + SubOverride rsync + which + ]; + + # These are part of a greater effort to add better support upstream: + # https://github.com/RexOps/Rex/compare/master...nixos + patches = [ + # Fix rex's ability to execute things on NixOS managed hosts + (fetchpatch { + url = "https://github.com/RexOps/Rex/commit/c71f3b255dac8f929abea46913798f132566af55.patch"; + hash = "sha256-S2tF3IZ96QrxDN3HfBk7RWDZcEwukQYAkSId51dATiU="; + }) + # Fix explicit calls to /bin/mv and /bin/rm + (fetchpatch { + url = "https://github.com/RexOps/Rex/commit/2782e80bb9789d3afb42e08904c28a4366a58334.patch"; + hash = "sha256-htm39fF2tumG5b5E1ZBRX5n3vRaZZZzn2lfSN1omP8s="; + }) + # Fix for PATH assumptions + (fetchpatch { + url = "https://github.com/RexOps/Rex/commit/ec72c8d1fdddf9116afdb21091100fe7cc20f41a.patch"; + hash = "sha256-a/Sns2f596dbAWbuIveNldc/V3MwR08/ocXVgx0Tbcw="; + }) + # Fix explicit path in Sudo.pm + (fetchpatch { + url = "https://github.com/RexOps/Rex/commit/f0b312f42178e7e4271b5b010c00efb5cdba2970.patch"; + hash = "sha256-n/+huVCM8zpgx2LZgMB41PPIYgNhF6AK8+4FGPQH+FU="; + }) ]; nativeBuildInputs = with perlPackages; [ installShellFiles ParallelForkManager ]; @@ -42,8 +71,6 @@ perlPackages.buildPerlPackage rec { YAML ]; - doCheck = false; - outputs = [ "out" ]; fixupPhase = '' diff --git a/pkgs/tools/text/crowdin-cli/default.nix b/pkgs/tools/text/crowdin-cli/default.nix index a657ab6ecc116..70dfdc325c95c 100644 --- a/pkgs/tools/text/crowdin-cli/default.nix +++ b/pkgs/tools/text/crowdin-cli/default.nix @@ -14,11 +14,11 @@ stdenv.mkDerivation rec { pname = "crowdin-cli"; - version = "3.11.1"; + version = "3.12.0"; src = fetchurl { url = "https://github.com/crowdin/${pname}/releases/download/${version}/${pname}.zip"; - hash = "sha256-T2yQdy9HNy1Hp/iFLSlUqkssWONsg0ikHDMK1iPOIGY="; + hash = "sha256-Key8zmFpQibTTaxbZT6kd6re9EdJ3wgEj+WiLervJiE="; }; nativeBuildInputs = [ installShellFiles makeWrapper unzip ]; diff --git a/pkgs/tools/text/dos2unix/default.nix b/pkgs/tools/text/dos2unix/default.nix index c6c92b876ffad..a76432d76c05e 100644 --- a/pkgs/tools/text/dos2unix/default.nix +++ b/pkgs/tools/text/dos2unix/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "dos2unix"; - version = "7.4.4"; + version = "7.5.0"; src = fetchurl { url = "https://waterlan.home.xs4all.nl/dos2unix/${pname}-${version}.tar.gz"; - sha256 = "sha256-KKhB2wvVgn1kXKup2AFeOnGYPcbjmAcLUofuE3rkQ24="; + sha256 = "sha256-ejsB0B4hTWLCs+BMOpLg3ccoo4VWbkwDVu+mb9brla8="; }; nativeBuildInputs = [ perl gettext ]; diff --git a/pkgs/tools/text/gnugrep/default.nix b/pkgs/tools/text/gnugrep/default.nix index fc285bb4c4dea..75c6f69507370 100644 --- a/pkgs/tools/text/gnugrep/default.nix +++ b/pkgs/tools/text/gnugrep/default.nix @@ -1,11 +1,11 @@ -{ lib, stdenv, fetchurl, pcre, libiconv, perl, autoreconfHook }: +{ lib, stdenv, glibcLocales, fetchurl, pcre2, libiconv, perl, autoreconfHook }: # Note: this package is used for bootstrapping fetchurl, and thus # cannot use fetchpatch! All mutable patches (generated by GitHub or # cgit) that are needed here should be included directly in Nixpkgs as # files. -let version = "3.7"; in +let version = "3.11"; in stdenv.mkDerivation { pname = "gnugrep"; @@ -13,23 +13,22 @@ stdenv.mkDerivation { src = fetchurl { url = "mirror://gnu/grep/grep-${version}.tar.xz"; - sha256 = "0g42svbc1nq5bamxfj6x7320wli4dlj86padk0hwgbk04hqxl42w"; + hash = "sha256-HbKu3eidDepCsW2VKPiUyNFdrk4ZC1muzHj1qVEnbqs="; }; - # https://git.savannah.gnu.org/cgit/gnulib.git/commit/?id=b50c6442e43d79471a31a2a202d3e50c0557446f - patches = lib.optional stdenv.hostPlatform.isLoongArch64 ./sigsegv-loongarch.patch; + # Some gnulib tests fail on Musl: https://github.com/NixOS/nixpkgs/pull/228714 + postPatch = if stdenv.hostPlatform.isMusl then '' + sed -i 's:gnulib-tests::g' Makefile.in + '' else null; - # Perl is needed for testing - nativeBuildInputs = [ perl ] ++ lib.optional stdenv.hostPlatform.isLoongArch64 autoreconfHook; + nativeCheckInputs = [ perl glibcLocales ]; outputs = [ "out" "info" ]; # the man pages are rather small - buildInputs = [ pcre libiconv ]; + buildInputs = [ pcre2 libiconv ]; # cygwin: FAIL: multibyte-white-space # freebsd: FAIL mb-non-UTF8-performance - # all platforms: timing sensitivity in long-pattern-perf - #doCheck = !stdenv.isDarwin && !stdenv.isSunOS && !stdenv.isCygwin && !stdenv.isFreeBSD; - doCheck = false; + doCheck = !stdenv.isCygwin && !stdenv.isFreeBSD; # On macOS, force use of mkdir -p, since Grep's fallback # (./install-sh) is broken. @@ -62,12 +61,14 @@ stdenv.mkDerivation { license = licenses.gpl3Plus; maintainers = [ - maintainers.eelco + maintainers.das_j maintainers.m00wl ]; platforms = platforms.all; mainProgram = "grep"; }; - passthru = {inherit pcre;}; + passthru = { + inherit pcre2; + }; } diff --git a/pkgs/tools/text/gnugrep/sigsegv-loongarch.patch b/pkgs/tools/text/gnugrep/sigsegv-loongarch.patch deleted file mode 100644 index 19bb2c1d70ca5..0000000000000 --- a/pkgs/tools/text/gnugrep/sigsegv-loongarch.patch +++ /dev/null @@ -1,31 +0,0 @@ -From b50c6442e43d79471a31a2a202d3e50c0557446f Mon Sep 17 00:00:00 2001 -From: Sun Haiyong <youbest@sina.com> -Date: Sat, 4 Sep 2021 15:06:43 +0200 -Subject: sigsegv: Improve cross-compilation support for LoongArch CPU. - -* m4/stack-direction.m4 (SV_STACK_DIRECTION): Assume the stack grows -down on LoongArch. ---- - m4/stack-direction.m4 | 3 ++- - 1 file changed, 2 insertions(+), 1 deletion(-) - -diff --git a/m4/stack-direction.m4 b/m4/stack-direction.m4 -index 9328725..e682be9 100644 ---- a/m4/stack-direction.m4 -+++ b/m4/stack-direction.m4 -@@ -1,4 +1,4 @@ --# stack-direction.m4 serial 7 -+# stack-direction.m4 serial 8 - dnl Copyright (C) 2002-2021 Free Software Foundation, Inc. - dnl This file is free software, distributed under the terms of the GNU - dnl General Public License. As a special exception to the GNU General -@@ -32,6 +32,7 @@ AC_DEFUN([SV_STACK_DIRECTION], - i?86 | x86_64 | \ - i860 | \ - ia64 | \ -+ loongarch* | \ - m32r | \ - m68* | \ - m88k | \ --- -cgit v1.1 diff --git a/pkgs/tools/text/goawk/default.nix b/pkgs/tools/text/goawk/default.nix index 286caa58ec0eb..acbc2eb44dbd1 100644 --- a/pkgs/tools/text/goawk/default.nix +++ b/pkgs/tools/text/goawk/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "goawk"; - version = "1.23.1"; + version = "1.23.2"; src = fetchFromGitHub { owner = "benhoyt"; repo = "goawk"; rev = "v${version}"; - sha256 = "sha256-U7fJq9BiWHhyM/I8gVX+PjrGZKanhBgWQWIn9ynOvQI="; + sha256 = "sha256-mrByeZt/EkTbcqcp3eUquKkrz4tReEms1VEla511uQc="; }; vendorHash = null; diff --git a/pkgs/tools/text/kdiff3/default.nix b/pkgs/tools/text/kdiff3/default.nix index 7877d7d8d3d2c..22b341096426b 100644 --- a/pkgs/tools/text/kdiff3/default.nix +++ b/pkgs/tools/text/kdiff3/default.nix @@ -14,11 +14,11 @@ mkDerivation rec { pname = "kdiff3"; - version = "1.10.1"; + version = "1.10.4"; src = fetchurl { url = "https://download.kde.org/stable/${pname}/${pname}-${version}.tar.xz"; - sha256 = "sha256-IFQ0kw9nU2wgUZFir33fQ1hG4qGhJdegmG9M4n+bM8g="; + sha256 = "sha256-sq//S3pJib9KCjeGfyW3a6uI3zq2Wi99QJp7S+0HBZ0="; }; buildInputs = [ boost ]; diff --git a/pkgs/tools/text/languagetool-rust/default.nix b/pkgs/tools/text/languagetool-rust/default.nix index 159b696c657fc..23e3d3805ae58 100644 --- a/pkgs/tools/text/languagetool-rust/default.nix +++ b/pkgs/tools/text/languagetool-rust/default.nix @@ -10,16 +10,16 @@ rustPlatform.buildRustPackage rec { pname = "languagetool-rust"; - version = "2.1.1"; + version = "2.1.2"; src = fetchFromGitHub { owner = "jeertmans"; repo = pname; rev = "v${version}"; - hash = "sha256-tgx1LcVAlBcgYAdtn4n5TiLzinmOImLoatGowUFHpUM="; + hash = "sha256-2RIfavAPxi8986f1hz7cnuIuKsPQ13PYy66FTnozIp0="; }; - cargoHash = "sha256-8Q+Li4wLkS9/HlSdtfOFnojtUBojO3oUpNHkyOu5clA="; + cargoHash = "sha256-PE/q8laWos8K9b+sWg47iw/w0g4c3utkVd+KXXPJKhY="; buildFeatures = [ "full" ]; diff --git a/pkgs/tools/text/mdbook-katex/default.nix b/pkgs/tools/text/mdbook-katex/default.nix index a1314d2ccd138..e493d6228f2ed 100644 --- a/pkgs/tools/text/mdbook-katex/default.nix +++ b/pkgs/tools/text/mdbook-katex/default.nix @@ -2,14 +2,14 @@ rustPlatform.buildRustPackage rec { pname = "mdbook-katex"; - version = "0.5.1"; + version = "0.5.3"; src = fetchCrate { inherit pname version; - hash = "sha256-RDNZ6+d+UbiQ/Eb2+YbhPyGVcM8079UFsnNvch/1oAs="; + hash = "sha256-QfimccchYkOfGxYXZQ4iR3tGDfyj3ZhvWCuVteLncpE="; }; - cargoHash = "sha256-An2mQ4kWGF3qk2v9VeQh700n7n/+3ShPqMfCnZmiIuc="; + cargoHash = "sha256-bER9N9qkoxmIaM4nZNJe8UarMFb+WeHIjJqL/EH/C/U="; buildInputs = lib.optionals stdenv.isDarwin [ CoreServices ]; diff --git a/pkgs/tools/text/mdbook-toc/default.nix b/pkgs/tools/text/mdbook-toc/default.nix new file mode 100644 index 0000000000000..88f3bd599f0e3 --- /dev/null +++ b/pkgs/tools/text/mdbook-toc/default.nix @@ -0,0 +1,25 @@ +{ lib, stdenv, fetchFromGitHub, rustPlatform, CoreServices }: + +rustPlatform.buildRustPackage rec { + pname = "mdbook-toc"; + version = "0.9.0"; + + src = fetchFromGitHub { + owner = "badboy"; + repo = pname; + rev = version; + sha256 = "sha256-7JpMBQqglLn33HwMBuIR5Hc0ISmzLPjQXGJVRwwl4OU="; + }; + + cargoSha256 = "sha256-Vj9DSjJtkexKly8IWlGEQkVrjSHcK1/2i+2g2Ht0eUo="; + + buildInputs = lib.optionals stdenv.isDarwin [ CoreServices ]; + + meta = with lib; { + description = "A preprocessor for mdbook to add inline Table of Contents support"; + homepage = "https://github.com/badboy/mdbook-toc"; + license = [ licenses.mpl20 ]; + maintainers = with maintainers; [ matthiasbeyer ]; + }; +} + diff --git a/pkgs/tools/text/mdbook/default.nix b/pkgs/tools/text/mdbook/default.nix index 0ec4a9746258e..4c53b36640be3 100644 --- a/pkgs/tools/text/mdbook/default.nix +++ b/pkgs/tools/text/mdbook/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "mdbook"; - version = "0.4.29"; + version = "0.4.30"; src = fetchFromGitHub { owner = "rust-lang"; repo = "mdBook"; rev = "refs/tags/v${version}"; - sha256 = "sha256-81QU1FJ5f23OdS+bzMnHEMbwwzywU38Xoq3DEN0Kgpg="; + sha256 = "sha256-AKGvU8yEgUcLRaf+fPet1kv84m95qrO25P4izP1w9lg="; }; - cargoHash = "sha256-SyDLC2x1hEyjt+GG50CblTGahJAkEZWkXSPyPvUJNgw="; + cargoHash = "sha256-Jg/+LAxgyGlVcqUdiHnZpwmTrtApWLXFhy0bNcNs0hM="; buildInputs = lib.optionals stdenv.isDarwin [ CoreServices ]; diff --git a/pkgs/tools/text/ov/default.nix b/pkgs/tools/text/ov/default.nix index 4dcda3bb33665..20d7a40b7f587 100644 --- a/pkgs/tools/text/ov/default.nix +++ b/pkgs/tools/text/ov/default.nix @@ -4,24 +4,28 @@ , installShellFiles , pandoc , makeWrapper +, testers +, ov }: buildGoModule rec { pname = "ov"; - version = "0.23.0"; + version = "0.30.0"; src = fetchFromGitHub { owner = "noborus"; repo = "ov"; rev = "refs/tags/v${version}"; - hash = "sha256-zIPJvlzq9N5sjc7OkdQnxZZYK4RuM6jW4EWLrEzSabg="; + hash = "sha256-xTnUTtMm986MnQEKgExWfABU8E8C+ZiRZvOpg3FY5cY="; }; vendorHash = "sha256-bQREazHu0SQrMKyNPtUvzeKR/zb0FJOLpHBwHml43Hs="; ldflags = [ - "-X main.Version=v${version}" - "-X main.Revision=${src.rev}" + "-s" + "-w" + "-X=main.Version=v${version}" + "-X=main.Revision=${src.rev}" ]; subPackages = [ "." ]; @@ -50,11 +54,18 @@ buildGoModule rec { cp $src/ov.yaml $doc/share/$name/sample-config.yaml ''; + passthru.tests = { + version = testers.testVersion { + package = ov; + version = "v${version}"; + }; + }; + meta = with lib; { description = "Feature-rich terminal-based text viewer"; homepage = "https://noborus.github.io/ov"; + changelog = "https://github.com/noborus/ov/releases/tag/v${version}"; license = licenses.mit; - platforms = platforms.linux ++ platforms.darwin; - maintainers = with maintainers; [ farcaller ]; + maintainers = with maintainers; [ farcaller figsoda ]; }; } diff --git a/pkgs/tools/text/repgrep/default.nix b/pkgs/tools/text/repgrep/default.nix new file mode 100644 index 0000000000000..f876366e458e9 --- /dev/null +++ b/pkgs/tools/text/repgrep/default.nix @@ -0,0 +1,46 @@ +{ lib +, rustPlatform +, fetchFromGitHub +, asciidoctor +, installShellFiles +, makeWrapper +, ripgrep +}: + +rustPlatform.buildRustPackage rec { + pname = "repgrep"; + version = "0.12.4"; + + src = fetchFromGitHub { + owner = "acheronfail"; + repo = "repgrep"; + rev = version; + hash = "sha256-tMv0MdFlDEYx8lNINfnhX6WgcpVLm1fTlaUddej5KRc="; + }; + + cargoHash = "sha256-NjPFoVPHjwG74ZNStYaNMzwdX488xDjGJu92+UWC2z8="; + + nativeBuildInputs = [ + asciidoctor + installShellFiles + makeWrapper + ]; + + postInstall = '' + wrapProgram $out/bin/rgr \ + --prefix PATH : ${lib.makeBinPath [ ripgrep ]} + + pushd "$(dirname "$(find -path '**/repgrep-stamp' | head -n 1)")" + installManPage rgr.1 + installShellCompletion rgr.{bash,fish} _rgr + popd + ''; + + meta = with lib; { + description = "An interactive replacer for ripgrep that makes it easy to find and replace across files on the command line"; + homepage = "https://github.com/acheronfail/repgrep"; + changelog = "https://github.com/acheronfail/repgrep/blob/${src.rev}/CHANGELOG.md"; + license = with licenses; [ mit asl20 unlicense ]; + maintainers = with maintainers; [ figsoda ]; + }; +} diff --git a/pkgs/tools/text/topfew/default.nix b/pkgs/tools/text/topfew/default.nix new file mode 100644 index 0000000000000..967e4e1403a26 --- /dev/null +++ b/pkgs/tools/text/topfew/default.nix @@ -0,0 +1,37 @@ +{ lib +, buildGoModule +, fetchFromGitHub +, installShellFiles +}: + +buildGoModule rec { + pname = "topfew"; + version = "0.9.0"; + + src = fetchFromGitHub { + owner = "timbray"; + repo = "topfew"; + rev = version; + hash = "sha256-6ydi/4LyqTLKpR00f4zpcrTnCorlhnsBOxdhzBMNcRI="; + }; + + vendorHash = null; + + nativeBuildInputs = [ + installShellFiles + ]; + + ldflags = [ "-s" "-w" ]; + + postInstall = '' + installManPage doc/tf.1 + ''; + + meta = with lib; { + description = "Finds the fields (or combinations of fields) which appear most often in a stream of records"; + homepage = "https://github.com/timbray/topfew"; + license = licenses.gpl3Only; + maintainers = with maintainers; [ figsoda ]; + mainProgram = "tf"; + }; +} diff --git a/pkgs/tools/typesetting/asciidoctorj/default.nix b/pkgs/tools/typesetting/asciidoctorj/default.nix index 8a2be49648180..ac8683a36db31 100644 --- a/pkgs/tools/typesetting/asciidoctorj/default.nix +++ b/pkgs/tools/typesetting/asciidoctorj/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "asciidoctorj"; - version = "2.5.8"; + version = "2.5.10"; src = fetchzip { url = "mirror://maven/org/asciidoctor/${pname}/${version}/${pname}-${version}-bin.zip"; - sha256 = "sha256-Xn6uIHEsyIXA9ls0bZZHdW7aKcgdub9C6g7lQ853tiQ="; + sha256 = "sha256-uhGwZkr5DaoQGkH+romkD7bQTLr+O8Si+wQcZXyMWOI="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/typesetting/mmark/default.nix b/pkgs/tools/typesetting/mmark/default.nix index a5b677888420b..55de563c538be 100644 --- a/pkgs/tools/typesetting/mmark/default.nix +++ b/pkgs/tools/typesetting/mmark/default.nix @@ -2,13 +2,16 @@ buildGoModule rec { pname = "mmark"; - version = "2.2.31"; + version = "2.2.32"; src = fetchFromGitHub { owner = "mmarkdown"; repo = "mmark"; - rev = "v${version}"; - sha256 = "sha256-mCnlLsvkkB7ZvBCLYHvYanz9XgWo92v5M/kKulhUKTE="; + # The tag has an outdated version number and fails the versio ntest + # The pinned revision includes one extra commit that fixes the issue + # rev = "v${version}"; + rev = "158e9cca0280c58e205cb69b02bf33d7d826915e"; + hash = "sha256-OzmqtmAAsG3ncrTl2o9rhK75i1WIpDnph0YrY38SlU0="; }; vendorHash = "sha256-GjR9cOGLB6URHQi+qcyNbP7rm0+y4wypvgUxgJzIgGQ="; diff --git a/pkgs/tools/video/rav1e/default.nix b/pkgs/tools/video/rav1e/default.nix index 64667b90a066e..b5b66ec34751a 100644 --- a/pkgs/tools/video/rav1e/default.nix +++ b/pkgs/tools/video/rav1e/default.nix @@ -35,14 +35,14 @@ let in rustPlatform.buildRustPackage rec { pname = "rav1e"; - version = "0.6.4"; + version = "0.6.6"; src = fetchCrate { inherit pname version; - sha256 = "sha256-G7o82MAZmMOfs1wp3AVUgXxDW6Txuc0qTm5boRpXF6g="; + sha256 = "sha256-urYMT1sJUMBj1L/2Hi+hcYbWbi0ScSls0pm9gLj9H3o="; }; - cargoHash = "sha256-12bePpI8z35gzCHGKDpaGUVvosQqijP60NCgElHDsyw="; + cargoHash = "sha256-qQfEpynhlIEKU1Ptq/jM1Wdtn+BVCZT1lmou2S1GL4I="; depsBuildBuild = [ pkg-config ]; diff --git a/pkgs/tools/video/svt-av1/default.nix b/pkgs/tools/video/svt-av1/default.nix index 8cf9dc8498966..2d722d7037a82 100644 --- a/pkgs/tools/video/svt-av1/default.nix +++ b/pkgs/tools/video/svt-av1/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation (finalAttrs: { pname = "svt-av1"; - version = "1.4.1"; + version = "1.5.0"; src = fetchFromGitLab { owner = "AOMediaCodec"; repo = "SVT-AV1"; rev = "v${finalAttrs.version}"; - sha256 = "sha256-jmr5egbuqLnBW7OFuaQk3F4s5xqTpXhWcJAfZySGWeU="; + sha256 = "sha256-EBWtvHOcFa6co0NeYns7Wkhz3LhqWJIRjBWfCrWJyss="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/virtualization/shipyard/default.nix b/pkgs/tools/virtualization/jumppad/default.nix index 6c268373f13fd..1742e2d958356 100644 --- a/pkgs/tools/virtualization/shipyard/default.nix +++ b/pkgs/tools/virtualization/jumppad/default.nix @@ -1,16 +1,16 @@ { lib, buildGoModule, fetchFromGitHub }: buildGoModule rec { - pname = "shipyard"; - version = "0.5.2"; + pname = "jumppad"; + version = "0.5.27"; src = fetchFromGitHub { - rev = "v${version}"; - owner = "shipyard-run"; + owner = "jumppad-labs"; repo = pname; - sha256 = "sha256-Fd0R067YGdigG9SyWjXQYyQEnJM7Oug7Qkb0v+zK09g="; + rev = "v${version}"; + hash = "sha256-WTywuQ1sl5zKpwUYyHFb+eTRxlUUDWFIrmhsPDB+iyc="; }; - vendorHash = "sha256-aE58XYgEWdPtq+DZKtn8Jbw2YIiiJSPutmVEOsG7urk="; + vendorHash = "sha256-OtixGeQY1wPqs3WU6gKvrzEgxnMORxr4BWCpn/VYxRc="; ldflags = [ "-s" "-w" "-X main.version=${version}" @@ -21,8 +21,8 @@ buildGoModule rec { doCheck = false; meta = with lib; { - description = "Shipyard is a tool for building modern cloud native development environments"; - homepage = "https://shipyard.run"; + description = "A tool for building modern cloud native development environments"; + homepage = "https://jumppad.dev"; license = licenses.mpl20; maintainers = with maintainers; [ cpcloud ]; }; diff --git a/pkgs/tools/virtualization/kubevirt/default.nix b/pkgs/tools/virtualization/kubevirt/default.nix index ac98f7ada67bc..16de73a8f970f 100644 --- a/pkgs/tools/virtualization/kubevirt/default.nix +++ b/pkgs/tools/virtualization/kubevirt/default.nix @@ -8,13 +8,13 @@ buildGoModule rec { pname = "kubevirt"; - version = "0.59.0"; + version = "0.59.1"; src = fetchFromGitHub { owner = "kubevirt"; repo = "kubevirt"; rev = "v${version}"; - sha256 = "sha256-4mTq/V4X8eq7g+ltgFD2ZFC7k2yiszG2i2QErttPATE="; + sha256 = "sha256-5xdPzL0GwEw+WHRIf7aQnvTd7dsayKkFubP/RSY8N/8="; }; vendorHash = null; diff --git a/pkgs/tools/virtualization/rootlesskit/default.nix b/pkgs/tools/virtualization/rootlesskit/default.nix index efd89e87adb98..d19d4b8d5129a 100644 --- a/pkgs/tools/virtualization/rootlesskit/default.nix +++ b/pkgs/tools/virtualization/rootlesskit/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "rootlesskit"; - version = "1.1.0"; + version = "1.1.1"; src = fetchFromGitHub { owner = "rootless-containers"; repo = "rootlesskit"; rev = "v${version}"; - hash = "sha256-pIxjesfkHWc7kz4knHxLnzopxO26dBAd/3+wVQ19oiI="; + hash = "sha256-QjGjP7GiJiP2bJE707Oc4wZ9o/gRmSboK9xGbbyG5EM="; }; - vendorSha256 = "sha256-ILGUJsfG60qVu1RWoe8gwjVDfhPoAVZck0CVORgN2y0="; + vendorSha256 = "sha256-mNuj4/e1qH3P5MfbwPLddXWhc8aDcQuoSSHZ+S+zKWw="; passthru = { updateScript = nix-update-script { }; diff --git a/pkgs/tools/wayland/shotman/default.nix b/pkgs/tools/wayland/shotman/default.nix index edd7f107a1286..1835fc12c66f9 100644 --- a/pkgs/tools/wayland/shotman/default.nix +++ b/pkgs/tools/wayland/shotman/default.nix @@ -9,13 +9,13 @@ rustPlatform.buildRustPackage rec { pname = "shotman"; - version = "0.4.1"; + version = "0.4.3"; src = fetchFromSourcehut { owner = "~whynothugo"; repo = pname; rev = "v${version}"; - hash = "sha256-u8vnRNxi7wLn0M2VZu9YTZuSAM/0afHRP01vve9tD9c="; + hash = "sha256-c2fgP6XB/fqKfsjqRRQpOFzHZyF/a9tLAKIGdKFAcSQ="; }; cargoLock = { diff --git a/pkgs/tools/wayland/swaysome/default.nix b/pkgs/tools/wayland/swaysome/default.nix index a05dccd75adb4..8c4c2eef5d522 100644 --- a/pkgs/tools/wayland/swaysome/default.nix +++ b/pkgs/tools/wayland/swaysome/default.nix @@ -5,16 +5,16 @@ rustPlatform.buildRustPackage rec { pname = "swaysome"; - version = "1.1.5"; + version = "2.0.0"; src = fetchFromGitLab { owner = "hyask"; repo = pname; rev = version; - sha256 = "sha256-E2Oy8ubH4VIpuH4idYNiZJISuYYe+stcUY/atN2JcVw="; + sha256 = "sha256-KmGAp0EPnnM+hPRpUGsbt+NU2v5mcPaRUqo0pqUr1L8="; }; - cargoSha256 = "sha256-S+GcyEYQ4nnVoPMuglTmFdP5j015UyCXMyyhPHa5m8k="; + cargoHash = "sha256-9sOR99CaTyMQoGMKP2Cag6YNxmgEqNPE/kiJPziqB9U="; meta = with lib; { description = "Helper to make sway behave more like awesomewm"; diff --git a/pkgs/tools/wayland/wlsunset/default.nix b/pkgs/tools/wayland/wlsunset/default.nix index 5ddce9d363271..8dac99d93e45d 100644 --- a/pkgs/tools/wayland/wlsunset/default.nix +++ b/pkgs/tools/wayland/wlsunset/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { pname = "wlsunset"; - version = "0.2.0"; + version = "0.3.0"; src = fetchFromSourcehut { owner = "~kennylevinsen"; repo = pname; rev = version; - sha256 = "0hhsddh3rs066rbsjksr8kcwg8lvglbvs67dq0r5wx5c1xcwb51w"; + sha256 = "sha256-jGYPWaRUqDL4htdAOA9CAQfoHLBPvK7O9vAzcE81f/E="; }; strictDeps = true; diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix index 67538ab89e2e8..db03cd8bab3af 100644 --- a/pkgs/top-level/aliases.nix +++ b/pkgs/top-level/aliases.nix @@ -180,7 +180,6 @@ mapAliases ({ bitwarden_rs-vault = vaultwarden-vault; - blink = throw "blink has been removed from nixpkgs, it was unmaintained and required python2 at the time of removal"; # Added 2022-01-12 bs1770gain = throw "bs1770gain has been removed from nixpkgs, as it had no maintainer or reverse dependencies"; # Added 2021-01-02 bsod = throw "bsod has been removed: deleted by upstream"; # Added 2022-01-07 btc1 = throw "btc1 has been removed, it was abandoned by upstream"; # Added 2020-11-03 @@ -1186,6 +1185,7 @@ mapAliases ({ openconnect_head = openconnect_unstable; # Added 2022-03-29 openconnect_gnutls = openconnect; # Added 2022-03-29 openconnect_pa = throw "openconnect_pa fork has been discontinued, support for GlobalProtect is now available in openconnect"; # Added 2021-05-21 + openconnect_unstable = throw "openconnect_unstable was removed from nixpkgs as it was not being updated"; # Added 2023-06-01 openelec-dvb-firmware = libreelec-dvb-firmware; # Added 2021-05-10 openexr_ctl = throw "'openexr_ctl' has been renamed to/replaced by 'ctl'"; # Converted to throw 2022-02-22 openimageio2 = openimageio; # Added 2023-01-05 @@ -1389,6 +1389,7 @@ mapAliases ({ pyload = throw "pyload has been removed from nixpkgs, as it was unmaintained"; # Added 2021-03-21 pynagsystemd = throw "pynagsystemd was removed as it was unmaintained and incompatible with recent systemd versions. Instead use its fork check_systemd"; # Added 2020-10-24 pyo3-pack = maturin; + pypi2nix = throw "pypi2nix has been removed due to being unmaintained"; pypolicyd-spf = spf-engine; # Added 2022-10-09 pyrex = throw "pyrex has been removed from nixpkgs as the project is still stuck on python2"; # Added 2022-01-12 pyrex095 = throw "pyrex has been removed from nixpkgs as the project is still stuck on python2"; # Added 2022-01-12 @@ -1417,6 +1418,7 @@ mapAliases ({ qt514 = throw "Qt 5 versions prior to 5.15 are no longer supported upstream and have been removed"; # Added 2022-11-24 qt515 = qt5; # Added 2022-11-24 qt5ct = libsForQt5.qt5ct; # Added 2021-12-27 + qt6ct = qt6Packages.qt6ct; # Added 2023-03-07 qtcurve = libsForQt5.qtcurve; # Added 2020-11-07 qtile-unwrapped = python3.pkgs.qtile; # Added 2023-05-12 qtkeychain = throw "the qtkeychain attribute (qt4 version) has been removes, use the qt5 version: libsForQt5.qtkeychain"; # Added 2021-08-04 @@ -1511,6 +1513,7 @@ mapAliases ({ shared_mime_info = throw "'shared_mime_info' has been renamed to/replaced by 'shared-mime-info'"; # Converted to throw 2022-02-22 inherit (libsForQt5.mauiPackages) shelf; # added 2022-05-17 shellinabox = throw "shellinabox has been removed from nixpkgs, as it was unmaintained upstream"; # Added 2021-12-15 + shipyard = jumppad; # Added 2023-06-06 sickbeard = throw "sickbeard has been removed from nixpkgs, as it was unmaintained"; # Added 2022-01-01 sickrage = throw "sickbeard has been removed from nixpkgs, as it was unmaintained"; # Added 2022-01-01 sigurlx = throw "sigurlx has been removed (upstream is gone)"; # Added 2022-01-24 @@ -1832,6 +1835,7 @@ mapAliases ({ zdfmediathk = throw "'zdfmediathk' has been renamed to/replaced by 'mediathekview'"; # Converted to throw 2022-02-22 zimreader = throw "zimreader has been removed from nixpkgs as it has been replaced by kiwix-serve and stopped working with modern zimlib versions"; # Added 2021-03-28 zimwriterfs = throw "zimwriterfs is now part of zim-tools"; # Added 2022-06-10. + zinc = zincsearch; # Added 2023-05-28 zq = zed.overrideAttrs (old: { meta = old.meta // { mainProgram = "zq"; }; }); # Added 2023-02-06 # TODO(ekleog): add ‘wasm’ alias to ‘ocamlPackages.wasm’ after 19.03 diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index ac3acd1fd63b1..1269f2fc30374 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -417,6 +417,8 @@ with pkgs; certgraph = callPackage ../tools/security/certgraph { }; + certsync = callPackage ../tools/security/certsync { }; + cewl = callPackage ../tools/security/cewl { }; chatgpt-cli = callPackage ../tools/misc/chatgpt-cli { }; @@ -479,6 +481,8 @@ with pkgs; commix = callPackage ../tools/security/commix { }; + comodoro = callPackage ../applications/misc/comodoro { }; + compdb = callPackage ../tools/misc/compdb { }; conserver = callPackage ../tools/misc/conserver { }; @@ -517,6 +521,8 @@ with pkgs; databricks-sql-cli = python3Packages.callPackage ../applications/misc/databricks-sql-cli { }; + dbip-country-lite = callPackage ../data/misc/dbip-country-lite { }; + dhallDirectoryToNix = callPackage ../build-support/dhall/directory-to-nix.nix { }; dhallPackageToNix = callPackage ../build-support/dhall/package-to-nix.nix { }; @@ -553,10 +559,12 @@ with pkgs; efficient-compression-tool = callPackage ../tools/compression/efficient-compression-tool { }; - enumer = callPackage ../tools/misc/enumer { - buildGoModule = buildGo119Module; # go 1.20 build failure + eludris = callPackage ../tools/misc/eludris { + inherit (darwin.apple_sdk.frameworks) Security; }; + enumer = callPackage ../tools/misc/enumer { }; + evans = callPackage ../development/tools/evans { }; evhz = callPackage ../tools/misc/evhz { }; @@ -587,6 +595,9 @@ with pkgs; gpick = callPackage ../tools/misc/gpick { }; + gridlock = callPackage ../tools/nix/gridlock { }; + inherit (gridlock) nyarr; + hwatch = callPackage ../tools/misc/hwatch { }; hobbes = callPackage ../development/tools/hobbes { stdenv = gcc10StdenvCompat; }; @@ -677,6 +688,8 @@ with pkgs; erosmb = callPackage ../tools/security/erosmb { }; + eslint_d = callPackage ../development/tools/eslint_d { }; + oauth2c = callPackage ../tools/security/oauth2c { }; octosuite = callPackage ../tools/security/octosuite { }; @@ -911,7 +924,6 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) CoreServices; antlr = antlr4_10; boost = boost177; # Configure checks for specific version. - protobuf = protobuf3_19; icu = icu69; }; @@ -1303,6 +1315,8 @@ with pkgs; accuraterip-checksum = callPackage ../tools/audio/accuraterip-checksum { }; + acme-dns = callPackage ../servers/dns/acme-dns/default.nix { }; + acme-sh = callPackage ../tools/admin/acme-sh { }; acousticbrainz-client = callPackage ../tools/audio/acousticbrainz-client { }; @@ -1340,7 +1354,7 @@ with pkgs; }; arc_unpacker = callPackage ../tools/archivers/arc_unpacker { - boost = boost16x; # checkPhase fails with Boost 1.77 + boost = boost175; # checkPhase fails with Boost 1.77 }; adminer = callPackage ../servers/adminer { }; @@ -1442,7 +1456,7 @@ with pkgs; airgeddon = callPackage ../tools/networking/airgeddon { }; - apache-airflow = with python3.pkgs; toPythonApplication apache-airflow; + apache-airflow = callPackage ../servers/apache-airflow { }; apachetomcatscanner = callPackage ../tools/security/apachetomcatscanner { }; @@ -1501,6 +1515,8 @@ with pkgs; balena-cli = callPackage ../tools/admin/balena-cli { }; + basez = callPackage ../tools/misc/basez { }; + butler = callPackage ../games/itch/butler.nix { inherit (darwin.apple_sdk.frameworks) Cocoa; }; @@ -1527,6 +1543,8 @@ with pkgs; dolbybcsoftwaredecode = callPackage ../applications/audio/dolbybcsoftwaredecode { }; + donkey = callPackage ../tools/security/donkey { }; + dwarfs = callPackage ../tools/filesystems/dwarfs { }; etlegacy = callPackage ../games/etlegacy { lua = lua5_4; }; @@ -1653,9 +1671,7 @@ with pkgs; mnc = callPackage ../tools/misc/mnc { }; - mgmt = callPackage ../applications/system/mgmt { - buildGoModule = buildGo119Module; # go 1.20 build failure - }; + mgmt = callPackage ../applications/system/mgmt { }; monica = callPackage ../servers/web-apps/monica { }; @@ -1701,12 +1717,18 @@ with pkgs; sdlookup = callPackage ../tools/security/sdlookup { }; + sdkmanager = with python3Packages; toPythonApplication sdkmanager; + sgrep = callPackage ../tools/text/sgrep { }; shell-genie = callPackage ../applications/misc/shell-genie { }; + snagboot = python3.pkgs.callPackage ../applications/misc/snagboot { }; + simple-dlna-browser = callPackage ../tools/networking/simple-dlna-browser { }; + sitespeed-io = callPackage ../tools/networking/sitespeed-io { }; + sorted-grep = callPackage ../tools/text/sorted-grep { }; smbmap = callPackage ../tools/security/smbmap { }; @@ -1868,9 +1890,7 @@ with pkgs; darcs-to-git = callPackage ../applications/version-management/darcs-to-git { }; - delta = callPackage ../applications/version-management/delta { - inherit (darwin.apple_sdk.frameworks) DiskArbitration Foundation Security; - }; + delta = darwin.apple_sdk_11_0.callPackage ../applications/version-management/delta { }; diff-so-fancy = callPackage ../applications/version-management/diff-so-fancy { }; @@ -1973,6 +1993,8 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) DiskArbitration Foundation; }; + git-credential-oauth = callPackage ../applications/version-management/git-credential-oauth { }; + git-crypt = callPackage ../applications/version-management/git-crypt { }; git-delete-merged-branches = callPackage ../applications/version-management/git-delete-merged-branches { }; @@ -2550,6 +2572,8 @@ with pkgs; ### APPLICATIONS/FILE-MANAGERS + browsr = callPackage ../applications/file-managers/browsr { }; + cfm = callPackage ../applications/file-managers/cfm { }; clex = callPackage ../applications/file-managers/clex { }; @@ -2779,6 +2803,8 @@ with pkgs; twine = with python3Packages; toPythonApplication twine; + abracadabra = qt6Packages.callPackage ../applications/radio/abracadabra { }; + accelergy = callPackage ../applications/science/computer-architecture/accelergy { }; aldo = callPackage ../applications/radio/aldo { }; @@ -2881,8 +2907,7 @@ with pkgs; arangodb = callPackage ../servers/nosql/arangodb { }; - # arcanist currently crashes with some workflows on php8.1, use 8.0 - arcanist = callPackage ../development/tools/misc/arcanist { php = php80; }; + arcanist = callPackage ../development/tools/misc/arcanist { php = php81; }; arduino = arduino-core.override { withGui = true; }; @@ -3192,9 +3217,7 @@ with pkgs; botamusique = callPackage ../tools/audio/botamusique { }; - boulder = callPackage ../tools/admin/boulder { - buildGoModule = buildGo119Module; # go 1.20 build failure - }; + boulder = callPackage ../tools/admin/boulder { }; btrfs-heatmap = callPackage ../tools/filesystems/btrfs-heatmap { }; @@ -3221,7 +3244,7 @@ with pkgs; certigo = callPackage ../tools/admin/certigo { }; - certipy = callPackage ../tools/security/certipy { }; + certipy = with python3Packages; toPythonApplication certipy-ad; catcli = python3Packages.callPackage ../tools/filesystems/catcli { }; @@ -3408,7 +3431,9 @@ with pkgs; flavours = callPackage ../applications/misc/flavours { }; - flirc = libsForQt5.callPackage ../applications/video/flirc { }; + flirc = libsForQt5.callPackage ../applications/video/flirc { + readline = readline63; + }; flood = nodePackages.flood; @@ -3473,6 +3498,8 @@ with pkgs; glaxnimate = libsForQt5.callPackage ../applications/video/glaxnimate { }; + gluesql = callPackage ../servers/sql/gluesql { }; + gmid = callPackage ../servers/gemini/gmid { }; gmni = callPackage ../applications/networking/browsers/gmni { }; @@ -3596,6 +3623,8 @@ with pkgs; lesspass-cli = callPackage ../tools/security/lesspass-cli { }; + livebook = callPackage ../servers/web-apps/livebook { }; + lsix = callPackage ../tools/graphics/lsix { }; mdr = callPackage ../tools/misc/mdr { }; @@ -3606,6 +3635,8 @@ with pkgs; pacparser = callPackage ../tools/networking/pacparser { }; + pairdrop = callPackage ../applications/misc/pairdrop { }; + opencbm = callPackage ../tools/misc/opencbm { }; parquet-tools = callPackage ../tools/misc/parquet-tools { }; @@ -3658,9 +3689,7 @@ with pkgs; gospider = callPackage ../tools/security/gospider { }; - browserpass = callPackage ../tools/security/browserpass { - buildGoModule = buildGo119Module; # go 1.20 build failure - }; + browserpass = callPackage ../tools/security/browserpass { }; passff-host = callPackage ../tools/security/passff-host { }; @@ -3728,6 +3757,8 @@ with pkgs; xc = callPackage ../development/tools/xc { }; + ios-webkit-debug-proxy = callPackage ../development/mobile/ios-webkit-debug-proxy { }; + xcodeenv = callPackage ../development/mobile/xcodeenv { }; gomobile = callPackage ../development/mobile/gomobile { }; @@ -3994,6 +4025,8 @@ with pkgs; bless = callPackage ../applications/editors/bless { }; + blink = darwin.apple_sdk_11_0.callPackage ../applications/emulators/blink { }; + blink1-tool = callPackage ../tools/misc/blink1-tool { }; blis = callPackage ../development/libraries/science/math/blis { }; @@ -4272,9 +4305,7 @@ with pkgs; cloudbrute = callPackage ../tools/security/cloudbrute { }; - cloudflared = callPackage ../applications/networking/cloudflared { - buildGoModule = buildGo119Module; # go 1.20 build failure - }; + cloudflared = callPackage ../applications/networking/cloudflared { }; cloudflare-dyndns = callPackage ../applications/networking/cloudflare-dyndns { }; @@ -4749,6 +4780,8 @@ with pkgs; eggdrop = callPackage ../tools/networking/eggdrop { }; + egglog = callPackage ../applications/science/logic/egglog { }; + ekam = callPackage ../development/tools/build-managers/ekam { }; eksctl = callPackage ../tools/admin/eksctl { }; @@ -5156,6 +5189,8 @@ with pkgs; gti = callPackage ../tools/misc/gti { }; + has = callPackage ../applications/misc/has { }; + hdate = callPackage ../applications/misc/hdate { }; heatseeker = callPackage ../tools/misc/heatseeker { }; @@ -5276,6 +5311,8 @@ with pkgs; joystickwake = callPackage ../tools/games/joystickwake { }; + jumppad = callPackage ../tools/virtualization/jumppad { }; + jwt-cli = callPackage ../tools/security/jwt-cli { inherit (darwin.apple_sdk.frameworks) Security; }; @@ -5679,9 +5716,7 @@ with pkgs; pcb2gcode = callPackage ../tools/misc/pcb2gcode { }; - pcp = callPackage ../tools/misc/pcp { - buildGoModule = buildGo119Module; # go 1.20 build failure - }; + pcp = callPackage ../tools/misc/pcp { }; persepolis = python3Packages.callPackage ../tools/networking/persepolis { wrapQtAppsHook = qt5.wrapQtAppsHook; @@ -5695,6 +5730,8 @@ with pkgs; photon = callPackage ../tools/networking/photon { }; + photofield = callPackage ../servers/photofield { }; + photoprism = callPackage ../servers/photoprism { }; piglit = callPackage ../tools/graphics/piglit { }; @@ -5813,8 +5850,6 @@ with pkgs; simdjson = callPackage ../development/libraries/simdjson { }; - shipyard = callPackage ../tools/virtualization/shipyard { }; - shisho = callPackage ../tools/security/shisho { }; sigslot = callPackage ../development/libraries/sigslot { }; @@ -5999,6 +6034,8 @@ with pkgs; antibody = callPackage ../shells/zsh/antibody { }; + antidote = callPackage ../shells/zsh/antidote { }; + antigen = callPackage ../shells/zsh/antigen { }; apparix = callPackage ../tools/misc/apparix { }; @@ -6279,7 +6316,6 @@ with pkgs; clementine = libsForQt5.callPackage ../applications/audio/clementine { gst_plugins = with gst_all_1; [ gst-plugins-base gst-plugins-good gst-plugins-ugly gst-libav ]; - protobuf = protobuf3_19; }; mellowplayer = libsForQt5.callPackage ../applications/audio/mellowplayer { }; @@ -6361,9 +6397,7 @@ with pkgs; unionfs-fuse = callPackage ../tools/filesystems/unionfs-fuse { }; - unparam = callPackage ../tools/misc/unparam { - buildGoModule = buildGo119Module; # go 1.20 build failure - }; + unparam = callPackage ../tools/misc/unparam { }; inherit (nodePackages) uppy-companion; @@ -6852,9 +6886,7 @@ with pkgs; dnspeep = callPackage ../tools/security/dnspeep { }; - dnsproxy = callPackage ../tools/networking/dnsproxy { - buildGoModule = buildGo119Module; # go 1.20 build failure - }; + dnsproxy = callPackage ../tools/networking/dnsproxy { }; dnsperf = callPackage ../tools/networking/dnsperf { }; @@ -6874,6 +6906,8 @@ with pkgs; dhcping = callPackage ../tools/networking/dhcping { }; + dotacat = callPackage ../tools/misc/dotacat { }; + di = callPackage ../tools/system/di { }; diction = callPackage ../tools/text/diction { }; @@ -7345,9 +7379,7 @@ with pkgs; emv = callPackage ../tools/misc/emv { }; - enblend-enfuse = callPackage ../tools/graphics/enblend-enfuse { - boost = boost172; - }; + enblend-enfuse = callPackage ../tools/graphics/enblend-enfuse { }; enc = callPackage ../tools/security/enc { }; @@ -7355,9 +7387,7 @@ with pkgs; endlessh-go = callPackage ../servers/endlessh-go { }; - eris-go = callPackage ../servers/eris-go { - buildGoModule = buildGo119Module; # go 1.20 build failure - }; + eris-go = callPackage ../servers/eris-go { }; ericw-tools = callPackage ../applications/misc/ericw-tools { stdenv = gcc10StdenvCompat; }; @@ -8222,7 +8252,6 @@ with pkgs; graphviz-nox = callPackage ../tools/graphics/graphviz { inherit (darwin.apple_sdk.frameworks) ApplicationServices; withXorg = false; - libdevil = libdevil-nox; }; grass-sass = callPackage ../tools/misc/grass-sass { }; @@ -8235,6 +8264,8 @@ with pkgs; gyb = callPackage ../tools/backup/gyb { }; + halftone = callPackage ../applications/graphics/halftone { }; + harminv = callPackage ../development/libraries/science/chemistry/harminv { }; igrep = callPackage ../tools/text/igrep { @@ -8754,7 +8785,7 @@ with pkgs; infisical = callPackage ../development/tools/infisical { }; - inform6 = callPackage ../development/compilers/inform6 { }; + inform6 = darwin.apple_sdk_11_0.callPackage ../development/compilers/inform6 { }; inform7 = callPackage ../development/compilers/inform7 { }; @@ -8817,9 +8848,7 @@ with pkgs; ipfetch = callPackage ../tools/networking/ipfetch { }; - ipfs-cluster = callPackage ../applications/networking/ipfs-cluster { - buildGoModule = buildGo119Module; # go 1.20 build failure - }; + ipfs-cluster = callPackage ../applications/networking/ipfs-cluster { }; ipfs-upload-client = callPackage ../applications/networking/ipfs-upload-client { }; @@ -8862,9 +8891,7 @@ with pkgs; isl_0_20 = callPackage ../development/libraries/isl/0.20.0.nix { }; isl_0_24 = callPackage ../development/libraries/isl/0.24.0.nix { }; - ispike = callPackage ../development/libraries/science/robotics/ispike { - boost = boost16x; - }; + ispike = callPackage ../development/libraries/science/robotics/ispike { }; isrcsubmit = callPackage ../tools/audio/isrcsubmit { stdenv = gcc10StdenvCompat; }; @@ -9192,9 +9219,7 @@ with pkgs; kubergrunt = callPackage ../applications/networking/cluster/kubergrunt { }; - kubo = callPackage ../applications/networking/kubo { - buildGoModule = buildGo119Module; # go 1.20 build failure - }; + kubo = callPackage ../applications/networking/kubo { }; kubo-migrator-all-fs-repo-migrations = callPackage ../applications/networking/kubo-migrator/all-migrations.nix { }; kubo-migrator-unwrapped = callPackage ../applications/networking/kubo-migrator/unwrapped.nix { }; @@ -9301,6 +9326,8 @@ with pkgs; lockfileProgs = callPackage ../tools/misc/lockfile-progs { }; + loganalyzer = libsForQt5.callPackage ../development/tools/loganalyzer { }; + logstash7 = callPackage ../tools/misc/logstash/7.x.nix { # https://www.elastic.co/support/matrix#logstash-and-jvm jre = jdk11_headless; @@ -9450,6 +9477,10 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) CoreServices; }; + mdbook-toc = callPackage ../tools/text/mdbook-toc { + inherit (darwin.apple_sdk.frameworks) CoreServices; + }; + mdbook-admonish = callPackage ../tools/text/mdbook-admonish { inherit (darwin.apple_sdk.frameworks) CoreServices; }; @@ -9623,6 +9654,8 @@ with pkgs; kea = callPackage ../tools/networking/kea { }; + keama = callPackage ../tools/networking/keama { }; + iredis = callPackage ../tools/admin/iredis { }; ispell = callPackage ../tools/text/ispell { }; @@ -9645,6 +9678,8 @@ with pkgs; lazycli = callPackage ../tools/misc/lazycli { }; + lavat = callPackage ../tools/misc/lavat { }; + lcdf-typetools = callPackage ../tools/misc/lcdf-typetools { }; ldapdomaindump = with python3Packages; toPythonApplication ldapdomaindump; @@ -11276,6 +11311,8 @@ with pkgs; phosh-mobile-settings = callPackage ../applications/window-managers/phosh/phosh-mobile-settings.nix { }; + piknik = callPackage ../tools/networking/piknik { }; + pinentry = libsForQt5.callPackage ../tools/security/pinentry { }; pinentry-curses = (lib.getOutput "curses" pinentry); @@ -11913,6 +11950,8 @@ with pkgs; renderdoc = libsForQt5.callPackage ../development/tools/renderdoc { }; + repgrep = callPackage ../tools/text/repgrep { }; + replace = callPackage ../tools/text/replace { }; resvg = callPackage ../tools/graphics/resvg { }; @@ -12097,6 +12136,8 @@ with pkgs; rustypaste = callPackage ../servers/rustypaste { }; + rustypaste-cli = callPackage ../tools/misc/rustypaste-cli { }; + rw = callPackage ../tools/misc/rw { }; rwc = callPackage ../tools/system/rwc { }; @@ -12270,9 +12311,7 @@ with pkgs; sftpman = callPackage ../tools/filesystems/sftpman { }; - sftpgo = callPackage ../servers/sftpgo { - buildGoModule = buildGo119Module; - }; + sftpgo = callPackage ../servers/sftpgo { }; screenfetch = callPackage ../tools/misc/screenfetch { }; @@ -12778,6 +12817,8 @@ with pkgs; surfraw = callPackage ../tools/networking/surfraw { }; + swagger-cli = callPackage ../tools/networking/swagger-cli { }; + swagger-codegen = callPackage ../tools/networking/swagger-codegen { }; swagger-codegen3 = callPackage ../tools/networking/swagger-codegen3 { }; @@ -13112,6 +13153,8 @@ with pkgs; toml2nix = callPackage ../development/tools/toml2nix { }; + topfew = callPackage ../tools/text/topfew { }; + topfew-rs = callPackage ../tools/text/topfew-rs { }; topgrade = callPackage ../tools/misc/topgrade { @@ -13599,7 +13642,7 @@ with pkgs; openconnectPackages = callPackage ../tools/networking/openconnect { }; - inherit (openconnectPackages) openconnect openconnect_unstable openconnect_openssl; + inherit (openconnectPackages) openconnect openconnect_openssl; globalprotect-openconnect = libsForQt5.callPackage ../tools/networking/globalprotect-openconnect { }; @@ -13675,6 +13718,8 @@ with pkgs; whatip = callPackage ../tools/networking/whatip { }; + whatsapp-chat-exporter = callPackage ../tools/misc/whatsapp-chat-exporter { }; + whatweb = callPackage ../tools/security/whatweb { }; whipper = callPackage ../applications/audio/whipper { }; @@ -14326,7 +14371,7 @@ with pkgs; zip = callPackage ../tools/archivers/zip { }; - zinc = callPackage ../servers/search/zinc { }; + zincsearch = callPackage ../servers/search/zincsearch { }; zkfuse = callPackage ../tools/filesystems/zkfuse { }; @@ -14634,6 +14679,8 @@ with pkgs; beekeeper-studio = callPackage ../development/tools/database/beekeeper-studio { }; + bfc = callPackage ../development/compilers/bfc { }; + bigloo = callPackage ../development/compilers/bigloo { }; binaryen = callPackage ../development/compilers/binaryen { @@ -16320,11 +16367,11 @@ with pkgs; inherit (darwin) apple_sdk; }; - rust_1_69 = callPackage ../development/compilers/rust/1_69.nix { + rust_1_70 = callPackage ../development/compilers/rust/1_70.nix { inherit (darwin.apple_sdk.frameworks) CoreFoundation Security SystemConfiguration; llvm_15 = llvmPackages_15.libllvm; }; - rust = rust_1_69; + rust = rust_1_70; mrustc = callPackage ../development/compilers/mrustc { }; mrustc-minicargo = callPackage ../development/compilers/mrustc/minicargo.nix { }; @@ -16332,8 +16379,8 @@ with pkgs; openssl = openssl_1_1; }; - rustPackages_1_69 = rust_1_69.packages.stable; - rustPackages = rustPackages_1_69; + rustPackages_1_70 = rust_1_70.packages.stable; + rustPackages = rustPackages_1_70; inherit (rustPackages) cargo cargo-auditable cargo-auditable-cargo-wrapper clippy rustc rustPlatform; @@ -16415,6 +16462,9 @@ with pkgs; buildPgxExtension = callPackage ../development/tools/rust/cargo-pgx/buildPgxExtension.nix { inherit (darwin.apple_sdk.frameworks) Security; }; + cargo-pgrx = callPackage ../development/tools/rust/cargo-pgrx/default.nix { + inherit (darwin.apple_sdk.frameworks) Security; + }; cargo-release = callPackage ../development/tools/rust/cargo-release { }; cargo-rr = callPackage ../development/tools/rust/cargo-rr { }; cargo-tarpaulin = callPackage ../development/tools/analysis/cargo-tarpaulin { @@ -16625,6 +16675,8 @@ with pkgs; shmig = callPackage ../development/tools/database/shmig { }; + sleek = callPackage ../development/tools/database/sleek { }; + smlfmt = callPackage ../development/tools/smlfmt { }; # smlnjBootstrap should be redundant, now that smlnj works on Darwin natively @@ -16635,9 +16687,7 @@ with pkgs; smlpkg = callPackage ../tools/package-management/smlpkg { }; - solc = callPackage ../development/compilers/solc { - boost = boost172; - }; + solc = callPackage ../development/compilers/solc { }; souffle = callPackage ../development/compilers/souffle { }; @@ -16717,6 +16767,8 @@ with pkgs; tinyscheme = callPackage ../development/interpreters/tinyscheme { }; + tbox = callPackage ../development/libraries/tbox { }; + inherit (nodePackages) typescript; bupc = callPackage ../development/compilers/bupc { }; @@ -17257,8 +17309,6 @@ with pkgs; check-jsonschema = callPackage ../development/tools/check-jsonschema { }; - pypi2nix = callPackage ../development/tools/pypi2nix { }; - pypi-mirror = callPackage ../development/tools/pypi-mirror { }; setupcfg2nix = python3Packages.callPackage ../development/tools/setupcfg2nix { }; @@ -17582,6 +17632,10 @@ with pkgs; asdf-vm = callPackage ../tools/misc/asdf-vm { }; + rtx = callPackage ../tools/misc/rtx { + inherit (darwin.apple_sdk.frameworks) Security; + }; + ### DEVELOPMENT / TOOLS abi-compliance-checker = callPackage ../development/tools/misc/abi-compliance-checker { }; @@ -17764,7 +17818,8 @@ with pkgs; electron_21-bin electron_22-bin electron_23-bin - electron_24-bin; + electron_24-bin + electron_25-bin; electron = electron-bin; electron_9 = electron_9-bin; @@ -17783,6 +17838,7 @@ with pkgs; electron_22 = electron_22-bin; electron_23 = electron_23-bin; electron_24 = electron_24-bin; + electron_25 = electron_25-bin; autobuild = callPackage ../development/tools/misc/autobuild { }; @@ -18036,6 +18092,8 @@ with pkgs; cadre = callPackage ../development/tools/cadre { }; + catnip = callPackage ../tools/audio/catnip { }; + cbrowser = callPackage ../development/tools/misc/cbrowser { }; cc-tool = callPackage ../development/embedded/cc-tool { }; @@ -18126,6 +18184,8 @@ with pkgs; coder = callPackage ../development/tools/coder { }; + codespelunker = callPackage ../development/tools/codespelunker { }; + compile-daemon = callPackage ../development/tools/compile-daemon { }; complexity = callPackage ../development/tools/misc/complexity { }; @@ -18863,6 +18923,8 @@ with pkgs; mockgen = callPackage ../development/tools/mockgen { }; + mockoon = callPackage ../tools/networking/mockoon { }; + modd = callPackage ../development/tools/modd { }; mold = callPackage ../development/tools/mold { @@ -18872,6 +18934,8 @@ with pkgs; else llvmPackages.stdenv; }; + moon = callPackage ../development/tools/build-managers/moon/default.nix { }; + msgpack-tools = callPackage ../development/tools/msgpack-tools { }; msgpuck = callPackage ../development/libraries/msgpuck { }; @@ -18997,6 +19061,8 @@ with pkgs; picotool = callPackage ../development/tools/picotool { }; + planus = callPackage ../development/tools/misc/planus { }; + pmccabe = callPackage ../development/tools/misc/pmccabe { }; pkgconf-unwrapped = callPackage ../development/tools/misc/pkgconf { }; @@ -19470,6 +19536,8 @@ with pkgs; tweak = callPackage ../applications/editors/tweak { }; + typical = callPackage ../development/tools/misc/typical { }; + uddup = callPackage ../tools/security/uddup { }; udis86 = callPackage ../development/tools/udis86 { }; @@ -19520,6 +19588,8 @@ with pkgs; visualvm = callPackage ../development/tools/java/visualvm { }; + volta = callPackage ../development/tools/volta { }; + vultr = callPackage ../development/tools/vultr { }; vultr-cli = callPackage ../development/tools/vultr-cli { }; @@ -19540,6 +19610,10 @@ with pkgs; webdis = callPackage ../development/tools/database/webdis { }; + xmake = callPackage ../development/tools/build-managers/xmake { + lua = lua5_4; + }; + xc3sprog = callPackage ../development/embedded/xc3sprog { stdenv = gcc10StdenvCompat; }; xcb-imdkit = callPackage ../development/libraries/xcb-imdkit { }; @@ -19585,7 +19659,6 @@ with pkgs; ycmd = callPackage ../development/tools/misc/ycmd { inherit (darwin.apple_sdk.frameworks) Cocoa; python = python3; - boost = boost174; }; yodl = callPackage ../development/tools/misc/yodl { }; @@ -19893,6 +19966,8 @@ with pkgs; capnproto-java = callPackage ../development/tools/capnproto-java { }; + capnproto-rust = callPackage ../development/tools/capnproto-rust { }; + captive-browser = callPackage ../applications/networking/browsers/captive-browser { }; ndn-cxx = callPackage ../development/libraries/ndn-cxx { }; @@ -20047,9 +20122,7 @@ with pkgs; cpp-ipfs-http-client = callPackage ../development/libraries/cpp-ipfs-http-client { }; - cpp-netlib = callPackage ../development/libraries/cpp-netlib { - boost = boost169; # fatal error: 'boost/asio/stream_socket_service.hpp' file not found - }; + cpp-netlib = callPackage ../development/libraries/cpp-netlib { }; cpp-jwt = callPackage ../development/libraries/cpp-jwt { }; @@ -20289,7 +20362,7 @@ with pkgs; far2l = callPackage ../applications/misc/far2l { stdenv = if stdenv.cc.isClang then llvmPackages.stdenv else stdenv; - inherit (darwin.apple_sdk.frameworks) IOKit Carbon Cocoa AudioToolbox OpenGL; + inherit (darwin.apple_sdk.frameworks) IOKit Carbon Cocoa AudioToolbox OpenGL System; }; farbfeld = callPackage ../development/libraries/farbfeld { }; @@ -21123,6 +21196,8 @@ with pkgs; hound = callPackage ../development/tools/misc/hound { }; + hpp-fcl = callPackage ../development/libraries/hpp-fcl { }; + hpx = callPackage ../development/libraries/hpx { boost = boost17x; asio = asio.override { boost = boost17x; }; @@ -21620,6 +21695,8 @@ with pkgs; libcrossguid = callPackage ../development/libraries/libcrossguid { }; + libcs50 = callPackage ../development/libraries/libcs50 { }; + libuchardet = callPackage ../development/libraries/libuchardet { }; libchop = callPackage ../development/libraries/libchop { }; @@ -21628,9 +21705,7 @@ with pkgs; libcint = callPackage ../development/libraries/libcint { }; - libclc = callPackage ../development/libraries/libclc { - llvmPackages = llvmPackages_14; - }; + libclc = callPackage ../development/libraries/libclc { }; libcli = callPackage ../development/libraries/libcli { }; @@ -21898,9 +21973,7 @@ with pkgs; libgtop = callPackage ../development/libraries/libgtop { }; - libLAS = callPackage ../development/libraries/libLAS { - boost = boost172; - }; + libLAS = callPackage ../development/libraries/libLAS { }; liblaxjson = callPackage ../development/libraries/liblaxjson { }; @@ -22147,9 +22220,7 @@ with pkgs; librevenge = callPackage ../development/libraries/librevenge { }; - librime = callPackage ../development/libraries/librime { - boost = boost174; - }; + librime = callPackage ../development/libraries/librime { }; librsb = callPackage ../development/libraries/librsb { # Taken from https://build.opensuse.org/package/view_file/science/librsb/librsb.spec @@ -22346,9 +22417,7 @@ with pkgs; libndctl = callPackage ../development/libraries/libndctl { }; - libnest2d = callPackage ../development/libraries/libnest2d { - boost = boost174; - }; + libnest2d = callPackage ../development/libraries/libnest2d { }; libnet = callPackage ../development/libraries/libnet { }; @@ -23016,17 +23085,10 @@ with pkgs; # Default libGLU libGLU = mesa_glu; - # Keep Mesa 22.3 for now because 23.0 does not build on Darwin. - # FIXME: remove, also investigate why we even need Mesa on Darwin. - mesa_22_3 = darwin.apple_sdk_11_0.callPackage ../development/libraries/mesa/22.3.nix { + mesa = darwin.apple_sdk_11_0.callPackage ../development/libraries/mesa { inherit (darwin.apple_sdk_11_0.frameworks) OpenGL; inherit (darwin.apple_sdk_11_0.libs) Xplugin; }; - mesa_23_0 = darwin.apple_sdk_11_0.callPackage ../development/libraries/mesa/23.0.nix { - inherit (darwin.apple_sdk_11_0.frameworks) OpenGL; - inherit (darwin.apple_sdk_11_0.libs) Xplugin; - }; - mesa = if stdenv.isDarwin then mesa_22_3 else mesa_23_0; mesa_glu = callPackage ../development/libraries/mesa-glu { inherit (darwin.apple_sdk.frameworks) ApplicationServices; @@ -23048,6 +23110,8 @@ with pkgs; markdown-anki-decks = callPackage ../tools/misc/markdown-anki-decks { }; + mdslides = callPackage ../tools/misc/mdslides { }; + micropython = callPackage ../development/interpreters/micropython { }; MIDIVisualizer = darwin.apple_sdk_11_0.callPackage ../applications/audio/midi-visualizer { @@ -23554,6 +23618,8 @@ with pkgs; podofo = callPackage ../development/libraries/podofo { }; + podofo010 = callPackage ../development/libraries/podofo/0.10.x.nix { }; + polkit = callPackage ../development/libraries/polkit { }; poppler = callPackage ../development/libraries/poppler { lcms = lcms2; }; @@ -24008,6 +24074,8 @@ with pkgs; simpleitk = callPackage ../development/libraries/simpleitk { lua = lua5_3; }; + sioclient = callPackage ../development/libraries/sioclient { }; + sfml = callPackage ../development/libraries/sfml { inherit (darwin.apple_sdk.frameworks) IOKit Foundation AppKit OpenAL; }; @@ -24313,6 +24381,8 @@ with pkgs; tclx = callPackage ../development/libraries/tclx { }; + tcl-fcgi = callPackage ../development/libraries/tcl-fcgi { }; + tdb = callPackage ../development/libraries/tdb { }; tdlib = callPackage ../development/libraries/tdlib { }; @@ -24674,6 +24744,8 @@ with pkgs; xgeometry-select = callPackage ../tools/X11/xgeometry-select { }; + xmake-core-sv = callPackage ../development/libraries/xmake-core-sv { }; + xmlada = callPackage ../development/libraries/ada/xmlada { }; xmlrpc_c = callPackage ../development/libraries/xmlrpc-c { }; @@ -25389,6 +25461,10 @@ with pkgs; exabgp = callPackage ../servers/networking/exabgp { }; + rustus = callPackage ../servers/networking/rustus { + inherit (darwin.apple_sdk.frameworks) Security; + }; + exim = callPackage ../servers/mail/exim { }; fastnetmon-advanced = callPackage ../servers/fastnetmon-advanced { }; @@ -25438,9 +25514,7 @@ with pkgs; grafana = callPackage ../servers/monitoring/grafana { }; grafanaPlugins = callPackages ../servers/monitoring/grafana/plugins { }; - grafana-agent = callPackage ../servers/monitoring/grafana-agent { - buildGoModule = buildGo119Module; # nixosTests.grafana-agent go 1.20 failure - }; + grafana-agent = callPackage ../servers/monitoring/grafana-agent { }; grafana-loki = callPackage ../servers/monitoring/loki { }; promtail = callPackage ../servers/monitoring/loki/promtail.nix { }; @@ -25702,9 +25776,7 @@ with pkgs; networkaudiod = callPackage ../servers/networkaudiod { }; - unifiedpush-common-proxies = callPackage ../servers/unifiedpush-common-proxies { - buildGoModule = buildGo119Module; # go 1.20 build failure - }; + unifiedpush-common-proxies = callPackage ../servers/unifiedpush-common-proxies { }; unit = callPackage ../servers/http/unit { }; @@ -25874,9 +25946,7 @@ with pkgs; easyeffects = callPackage ../applications/audio/easyeffects { }; - pulseeffects-legacy = callPackage ../applications/audio/pulseeffects-legacy { - boost = boost172; - }; + pulseeffects-legacy = callPackage ../applications/audio/pulseeffects-legacy { }; soundux = callPackage ../applications/audio/soundux { yt-dlp = yt-dlp.override { withAlias = true; }; @@ -25966,7 +26036,6 @@ with pkgs; boost = boost177; # Configure checks for specific version. protobuf = protobuf3_19; icu = icu69; - openssl = openssl_1_1; }; mysql_jdbc = callPackage ../servers/sql/mysql/jdbc { }; @@ -26125,6 +26194,7 @@ with pkgs; prometheus-flow-exporter = callPackage ../servers/monitoring/prometheus/flow-exporter.nix { }; prometheus-fritzbox-exporter = callPackage ../servers/monitoring/prometheus/fritzbox-exporter.nix { }; prometheus-gitlab-ci-pipelines-exporter = callPackage ../servers/monitoring/prometheus/gitlab-ci-pipelines-exporter.nix { }; + prometheus-graphite-exporter = callPackage ../servers/monitoring/prometheus/graphite-exporter.nix { }; prometheus-haproxy-exporter = callPackage ../servers/monitoring/prometheus/haproxy-exporter.nix { }; prometheus-influxdb-exporter = callPackage ../servers/monitoring/prometheus/influxdb-exporter.nix { }; prometheus-ipmi-exporter = callPackage ../servers/monitoring/prometheus/ipmi-exporter.nix { }; @@ -26148,9 +26218,7 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) CoreFoundation IOKit; }; prometheus-nut-exporter = callPackage ../servers/monitoring/prometheus/nut-exporter.nix { }; - prometheus-openldap-exporter = callPackage ../servers/monitoring/prometheus/openldap-exporter.nix { - buildGoModule = buildGo118Module; # nixosTests.prometheus-exporter.ldap fails with 1.19 - }; + prometheus-openldap-exporter = callPackage ../servers/monitoring/prometheus/openldap-exporter.nix { } ; prometheus-openvpn-exporter = callPackage ../servers/monitoring/prometheus/openvpn-exporter.nix { }; prometheus-pihole-exporter = callPackage ../servers/monitoring/prometheus/pihole-exporter.nix { }; prometheus-postfix-exporter = callPackage ../servers/monitoring/prometheus/postfix-exporter.nix { }; @@ -26240,9 +26308,8 @@ with pkgs; libtool = darwin.cctools; }; - # Fails to compile with boost <= 1.72 rippled = callPackage ../servers/rippled { - boost = boost172; + boost = boost177; }; rippled-validator-keys-tool = callPackage ../servers/rippled/validator-keys-tool.nix { }; @@ -26353,18 +26420,13 @@ with pkgs; systemd-journal2gelf = callPackage ../tools/system/systemd-journal2gelf { }; - tailscale = callPackage ../servers/tailscale { - # Version 1.38.1 requires Go >= 1.20 - buildGoModule = buildGo120Module; - }; + tailscale = callPackage ../servers/tailscale { }; + + tailscale-systray = callPackage ../applications/misc/tailscale-systray { }; tailspin = callPackage ../tools/misc/tailspin { }; - thanos = callPackage ../servers/monitoring/thanos { - # Fails to run with go1.20 due to go4.org/unsafe/assume-no-moving-gc not being - # update to be compatible with Go 1.20 - buildGoModule = buildGo119Module; - }; + thanos = callPackage ../servers/monitoring/thanos { }; trafficserver = callPackage ../servers/http/trafficserver { }; @@ -26426,9 +26488,7 @@ with pkgs; vouch-proxy = callPackage ../servers/vouch-proxy { }; - victoriametrics = callPackage ../servers/nosql/victoriametrics { - buildGoModule = buildGo119Module; # go 1.20 build failure - }; + victoriametrics = callPackage ../servers/nosql/victoriametrics { }; virtiofsd = callPackage ../servers/misc/virtiofsd { }; @@ -26635,6 +26695,8 @@ with pkgs; b43FirmwareCutter = callPackage ../os-specific/linux/firmware/b43-firmware-cutter { }; + epilys-bb = callPackage ../tools/system/epilys-bb { }; + below = callPackage ../os-specific/linux/below { }; bt-fw-converter = callPackage ../os-specific/linux/firmware/bt-fw-converter { }; @@ -27891,15 +27953,14 @@ with pkgs; usermount = callPackage ../os-specific/linux/usermount { }; - util-linux = if stdenv.isLinux then callPackage ../os-specific/linux/util-linux { } - else unixtools.util-linux; + util-linux = callPackage ../os-specific/linux/util-linux { }; - util-linuxMinimal = if stdenv.isLinux then util-linux.override { + util-linuxMinimal = util-linux.override { nlsSupport = false; ncursesSupport = false; systemdSupport = false; translateManpages = false; - } else util-linux; + }; v4l-utils = qt5.callPackage ../os-specific/linux/v4l-utils { }; @@ -27911,7 +27972,9 @@ with pkgs; vdo = callPackage ../os-specific/linux/vdo { }; - windows = callPackages ../os-specific/windows { }; + windmill = callPackage ../servers/windmill {}; + + windows = callPackages ../os-specific/windows {}; wirelesstools = callPackage ../os-specific/linux/wireless-tools { }; @@ -28430,6 +28493,8 @@ with pkgs; kochi-substitute-naga10 = callPackage ../data/fonts/kochi-substitute-naga10 { }; + kode-mono = callPackage ../data/fonts/kode-mono { }; + kopia = callPackage ../tools/backup/kopia { }; kora-icon-theme = callPackage ../data/icons/kora-icon-theme { @@ -29258,6 +29323,8 @@ with pkgs; abaddon = callPackage ../applications/networking/instant-messengers/abaddon { }; + adguardian = callPackage ../applications/networking/adguardian { }; + aeolus = callPackage ../applications/audio/aeolus { }; aeolus-stops = callPackage ../applications/audio/aeolus/stops.nix { }; @@ -29694,7 +29761,9 @@ with pkgs; calculix = callPackage ../applications/science/math/calculix { }; - calibre = qt6Packages.callPackage ../applications/misc/calibre { }; + calibre = qt6Packages.callPackage ../applications/misc/calibre { + podofo = podofo010; + }; calibre-web = callPackage ../servers/calibre-web { }; @@ -30072,6 +30141,8 @@ with pkgs; amazon-ecr-credential-helper = callPackage ../tools/admin/amazon-ecr-credential-helper { }; + dk = callPackage ../applications/window-managers/dk { }; + docker-credential-gcr = callPackage ../tools/admin/docker-credential-gcr { }; docker-credential-helpers = callPackage ../tools/admin/docker-credential-helpers { }; @@ -30214,45 +30285,23 @@ with pkgs; em = callPackage ../applications/editors/em { }; + inherit (recurseIntoAttrs (callPackage ../applications/editors/emacs { })) + emacs28 + emacs28-gtk2 + emacs28-gtk3 + emacs28-nox + emacs29 + emacs29-gtk3 + emacs29-nox + emacs29-pgtk + emacs-macport + ; + + emacsMacport = emacs-macport; emacs = emacs28; - emacs-gtk = emacs28-gtk; + emacs-gtk = emacs28-gtk3; emacs-nox = emacs28-nox; - emacs28 = callPackage ../applications/editors/emacs/28.nix { - # use override to enable additional features - libXaw = xorg.libXaw; - gconf = null; - alsa-lib = null; - acl = null; - gpm = null; - inherit (darwin.apple_sdk.frameworks) - AppKit Carbon Cocoa IOKit OSAKit Quartz QuartzCore WebKit - ImageCaptureCore GSS ImageIO; - inherit (darwin) sigtool; - }; - - emacs28-gtk = emacs28.override { - withGTK3 = true; - }; - - emacs28-nox = lowPrio (emacs28.override { - withX = false; - withNS = false; - withGTK2 = false; - withGTK3 = false; - }); - - emacsMacport = callPackage ../applications/editors/emacs/macport.nix { - withMacport = true; - - gconf = null; - - inherit (darwin.apple_sdk.frameworks) - AppKit Carbon Cocoa IOKit OSAKit Quartz QuartzCore WebKit - ImageCaptureCore GSS ImageIO; - inherit (darwin) sigtool; - }; - emacsPackagesFor = emacs: import ./emacs-packages.nix { inherit (lib) makeScope makeOverridable dontRecurseIntoAttrs; emacs' = emacs; @@ -30448,6 +30497,8 @@ with pkgs; flacon = libsForQt5.callPackage ../applications/audio/flacon { }; + flamp = callPackage ../applications/radio/flamp { }; + flexget = callPackage ../applications/networking/flexget { }; fldigi = callPackage ../applications/radio/fldigi { @@ -31337,6 +31388,8 @@ with pkgs; hushboard = python3.pkgs.callPackage ../applications/audio/hushboard { }; + husky = callPackage ../development/tools/misc/husky { }; + hydrogen = qt5.callPackage ../applications/audio/hydrogen { }; hydrogen_0 = callPackage ../applications/audio/hydrogen/0.nix { }; # Old stable, has GMKit. @@ -31394,6 +31447,8 @@ with pkgs; mt32emu-smf2wav = callPackage ../applications/audio/munt/mt32emu-smf2wav.nix { }; + noson = libsForQt5.callPackage ../applications/audio/noson { }; + offpunk = callPackage ../applications/networking/browsers/offpunk { }; owl-compositor = callPackage ../applications/window-managers/owl { }; @@ -31422,6 +31477,8 @@ with pkgs; pixinsight = libsForQt5.callPackage ../applications/graphics/pixinsight { }; + please-cli = callPackage ../applications/misc/please-cli { }; + protonup-qt = python3Packages.callPackage ../applications/misc/protonup-qt { }; pmbootstrap = python3Packages.callPackage ../tools/misc/pmbootstrap { }; @@ -31768,6 +31825,8 @@ with pkgs; irssi = callPackage ../applications/networking/irc/irssi { }; + filebrowser = callPackage ../applications/networking/filebrowser { }; + fish-irssi = callPackage ../applications/networking/irc/irssi/fish { }; kirc = callPackage ../applications/networking/irc/kirc { }; @@ -32156,6 +32215,8 @@ with pkgs; lemonbar-xft = callPackage ../applications/window-managers/lemonbar/xft.nix { }; + lenovo-legion = libsForQt5.callPackage ../os-specific/linux/lenovo-legion/app.nix { }; + legitify = callPackage ../development/tools/legitify { }; lens = callPackage ../applications/networking/cluster/lens { }; @@ -32591,7 +32652,6 @@ with pkgs; monotone = callPackage ../applications/version-management/monotone { lua = lua5; - boost = boost170; }; monotoneViz = callPackage ../applications/version-management/monotone-viz { @@ -32912,9 +32972,7 @@ with pkgs; opcua-client-gui = callPackage ../misc/opcua-client-gui { }; - open-policy-agent = callPackage ../development/tools/open-policy-agent { - buildGoModule = buildGo119Module; # go 1.20 build failure - }; + open-policy-agent = callPackage ../development/tools/open-policy-agent { }; openmm = callPackage ../development/libraries/science/chemistry/openmm { stdenv = gcc11Stdenv; @@ -33213,9 +33271,7 @@ with pkgs; notmuch-addrlookup = callPackage ../applications/networking/mailreaders/notmuch-addrlookup { }; - nova-filters = callPackage ../applications/audio/nova-filters { - boost = boost172; - }; + nova-filters = callPackage ../applications/audio/nova-filters { }; nvi = callPackage ../applications/editors/nvi { }; @@ -33649,6 +33705,8 @@ with pkgs; popcorntime = callPackage ../applications/video/popcorntime { }; + pot = callPackage ../applications/misc/pot { }; + pothos = libsForQt5.callPackage ../applications/radio/pothos { }; potrace = callPackage ../applications/graphics/potrace { }; @@ -33680,9 +33738,7 @@ with pkgs; proteus = callPackage ../applications/audio/proteus { }; - protonmail-bridge = callPackage ../applications/networking/protonmail-bridge { - buildGoModule = buildGo119Module; # go 1.20 build failure - }; + protonmail-bridge = callPackage ../applications/networking/protonmail-bridge { }; protonvpn-cli = python3Packages.callPackage ../applications/networking/protonvpn-cli { }; protonvpn-cli_2 = python3Packages.callPackage ../applications/networking/protonvpn-cli/2.nix { }; @@ -34101,6 +34157,8 @@ with pkgs; shadowfox = callPackage ../tools/networking/shadowfox { }; + shavee = callPackage ../applications/misc/shavee { }; + shell_gpt = callPackage ../tools/misc/shell_gpt { }; shfmt = callPackage ../tools/text/shfmt { }; @@ -34268,9 +34326,7 @@ with pkgs; ly = callPackage ../applications/display-managers/ly { }; - slic3r = callPackage ../applications/misc/slic3r { - boost = boost172; # Building fails with Boost >1.72 due to boost/detail/endian.hpp missing - }; + slic3r = callPackage ../applications/misc/slic3r { }; curaengine_stable = callPackage ../applications/misc/curaengine/stable.nix { }; @@ -34419,6 +34475,8 @@ with pkgs; sublime-music = callPackage ../applications/audio/sublime-music { }; + subtitlr = callPackage ../applications/audio/subtitlr { }; + subunit = callPackage ../development/libraries/subunit { }; surf = callPackage ../applications/networking/browsers/surf { gtk = gtk2; }; @@ -34746,9 +34804,7 @@ with pkgs; toxic = callPackage ../applications/networking/instant-messengers/toxic { }; - toxiproxy = callPackage ../development/tools/toxiproxy { - buildGoModule = buildGo119Module; # go 1.20 build failure - }; + toxiproxy = callPackage ../development/tools/toxiproxy { }; tqsl = callPackage ../applications/radio/tqsl { openssl = openssl_1_1; @@ -34941,7 +34997,7 @@ with pkgs; macvim = callPackage ../applications/editors/vim/macvim-configurable.nix { stdenv = clangStdenv; }; - vim-full = vimUtils.makeCustomizable (callPackage ../applications/editors/vim/configurable.nix { + vim-full = vimUtils.makeCustomizable (callPackage ../applications/editors/vim/full.nix { inherit (darwin.apple_sdk.frameworks) CoreServices Cocoa Foundation CoreData; inherit (darwin) libobjc; }); @@ -35139,7 +35195,7 @@ with pkgs; vscodium-fhsWithPackages = vscodium.fhsWithPackages; openvscode-server = callPackage ../servers/openvscode-server { - nodejs = nodejs_18; + nodejs = nodejs_16; inherit (darwin.apple_sdk.frameworks) AppKit Cocoa Security; inherit (darwin) cctools; }; @@ -35260,6 +35316,8 @@ with pkgs; westonLite = weston.override { demoSupport = false; hdrSupport = false; + jpegSupport = false; + lcmsSupport = false; pangoSupport = false; pipewireSupport = false; rdpSupport = false; @@ -35892,9 +35950,7 @@ with pkgs; ergo = callPackage ../applications/blockchains/ergo { }; - erigon = callPackage ../applications/blockchains/erigon { - buildGoModule = buildGo119Module; # go 1.20 build failure - }; + erigon = callPackage ../applications/blockchains/erigon { }; exodus = callPackage ../applications/blockchains/exodus { }; @@ -35930,7 +35986,7 @@ with pkgs; litecoin = libsForQt5.callPackage ../applications/blockchains/litecoin { inherit (darwin.apple_sdk.frameworks) AppKit; - boost = pkgs.boost174; + boost = pkgs.boost177; }; litecoind = litecoin.override { withGui = false; }; @@ -35992,9 +36048,7 @@ with pkgs; solana-cli = callPackage ../applications/blockchains/solana { }; - solana-validator = callPackage ../applications/blockchains/solana-validator { - inherit (darwin.apple_sdk.frameworks) IOKit Security AppKit; - }; + solana-validator = callPackage ../applications/blockchains/solana-validator { }; snarkos = callPackage ../applications/blockchains/snarkos { inherit (darwin.apple_sdk.frameworks) Security; @@ -36133,6 +36187,8 @@ with pkgs; freenukum = callPackage ../games/freenukum { }; + gamepad-tool = callPackage ../games/gamepad-tool { }; + gnome-hexgl = callPackage ../games/gnome-hexgl { }; gotypist = callPackage ../games/gotypist { }; @@ -36177,8 +36233,6 @@ with pkgs; rbdoom-3-bfg = callPackage ../games/doom-ports/rbdoom-3-bfg { }; - shavee = callPackage ../games/doom-ports/shavee { }; - slade = callPackage ../games/doom-ports/slade { wxGTK = wxGTK32.override { withWebKit = true; @@ -36752,6 +36806,14 @@ with pkgs; gtk = gtk2; }; + maptool = callPackage ../games/maptool { + # MapTool is fussy about which JRE it uses; OpenJDK will leave it hanging + # at launch in a class initialization deadlock. MapTool ships Temurin with + # their pre-built releases so we might as well use it too. + jre = temurin-bin-17; + openjfx = openjfx17; + }; + mari0 = callPackage ../games/mari0 { }; manaplus = callPackage ../games/manaplus { stdenv = gcc11Stdenv; }; @@ -36880,7 +36942,11 @@ with pkgs; otto-matic = callPackage ../games/otto-matic { }; - openraPackages = import ../games/openra pkgs.__splicedPackages; + openraPackages_2019 = import ../games/openra_2019 pkgs.__splicedPackages; + + openra_2019 = openraPackages_2019.engines.release; + + openraPackages = recurseIntoAttrs (callPackage ../games/openra {}); openra = openraPackages.engines.release; @@ -36945,12 +37011,9 @@ with pkgs; pong3d = callPackage ../games/pong3d { }; - pokerth = libsForQt5.callPackage ../games/pokerth { - boost = boost16x; - }; + pokerth = libsForQt5.callPackage ../games/pokerth { }; pokerth-server = libsForQt5.callPackage ../games/pokerth { - boost = boost16x; target = "server"; }; @@ -37036,10 +37099,7 @@ with pkgs; sauerbraten = callPackage ../games/sauerbraten { }; - scid = callPackage ../games/scid { - tcl = tcl-8_5; - tk = tk-8_5; - }; + scid = callPackage ../games/scid { }; scid-vs-pc = callPackage ../games/scid-vs-pc { tcl = tcl-8_6; @@ -37648,9 +37708,7 @@ with pkgs; inherit (llvmPackages) openmp; }; - ciftilib = callPackage ../development/libraries/science/biology/ciftilib { - boost = boost16x; - }; + ciftilib = callPackage ../development/libraries/science/biology/ciftilib { }; cmtk = callPackage ../applications/science/biology/cmtk { }; @@ -37736,9 +37794,7 @@ with pkgs; minia = callPackage ../applications/science/biology/minia { }; - mirtk = callPackage ../development/libraries/science/biology/mirtk { - boost = boost16x; - }; + mirtk = callPackage ../development/libraries/science/biology/mirtk { }; muscle = callPackage ../applications/science/biology/muscle { }; @@ -37902,6 +37958,8 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) Accelerate CoreGraphics CoreVideo OpenCL; }; + clblast = callPackage ../development/libraries/science/math/clblast { }; + cliquer = callPackage ../development/libraries/science/math/cliquer { }; coin-utils = callPackage ../development/libraries/science/math/coin-utils { }; @@ -39995,7 +40053,9 @@ with pkgs; vivisect = with python3Packages; toPythonApplication (vivisect.override { withGui = true; }); - vokoscreen = libsForQt5.callPackage ../applications/video/vokoscreen { }; + vokoscreen = libsForQt5.callPackage ../applications/video/vokoscreen { + ffmpeg = ffmpeg-full; + }; vokoscreen-ng = libsForQt5.callPackage ../applications/video/vokoscreen-ng { inherit (gst_all_1) gstreamer gst-plugins-base gst-plugins-good gst-plugins-bad gst-plugins-ugly; @@ -40362,9 +40422,7 @@ with pkgs; NSPlist = callPackage ../development/libraries/NSPlist { }; - PlistCpp = callPackage ../development/libraries/PlistCpp { - boost = boost172; - }; + PlistCpp = callPackage ../development/libraries/PlistCpp { }; xib2nib = callPackage ../development/tools/xib2nib { }; @@ -40551,6 +40609,8 @@ with pkgs; werf = callPackage ../applications/networking/cluster/werf { }; + yor = callPackage ../applications/networking/cluster/yor { }; + wifi-password = callPackage ../os-specific/darwin/wifi-password { }; qubes-core-vchan-xen = callPackage ../applications/qubes/qubes-core-vchan-xen { }; @@ -40689,6 +40749,8 @@ with pkgs; tuner = callPackage ../applications/audio/tuner { }; + tidal-dl = python3Packages.callPackage ../tools/audio/tidal-dl { }; + locate-dominating-file = callPackage ../tools/misc/locate-dominating-file { }; jfrog-cli = callPackage ../tools/misc/jfrog-cli { }; @@ -40718,4 +40780,6 @@ with pkgs; isolate = callPackage ../tools/security/isolate { }; reindeer = callPackage ../development/tools/reindeer { }; + + charasay = callPackage ../tools/misc/charasay { }; } diff --git a/pkgs/top-level/emacs-packages.nix b/pkgs/top-level/emacs-packages.nix index ed7580046ef3c..f7e614c8b3d63 100644 --- a/pkgs/top-level/emacs-packages.nix +++ b/pkgs/top-level/emacs-packages.nix @@ -30,6 +30,11 @@ let + mkElpaDevelPackages = { pkgs, lib }: import ../applications/editors/emacs/elisp-packages/elpa-devel-packages.nix { + inherit (pkgs) stdenv texinfo writeText gcc pkgs buildPackages; + inherit lib; + }; + mkElpaPackages = { pkgs, lib }: import ../applications/editors/emacs/elisp-packages/elpa-packages.nix { inherit (pkgs) stdenv texinfo writeText gcc pkgs buildPackages; inherit lib; @@ -58,12 +63,14 @@ let in makeScope pkgs'.newScope (self: makeOverridable ({ pkgs ? pkgs' , lib ? pkgs.lib + , elpaDevelPackages ? mkElpaDevelPackages { inherit pkgs lib; } self , elpaPackages ? mkElpaPackages { inherit pkgs lib; } self , nongnuPackages ? mkNongnuPackages { inherit pkgs lib; } self , melpaStablePackages ? melpaGeneric { inherit pkgs lib; } "stable" self , melpaPackages ? melpaGeneric { inherit pkgs lib; } "unstable" self , manualPackages ? mkManualPackages { inherit pkgs lib; } self }: ({} + // elpaDevelPackages // { inherit elpaDevelPackages; } // elpaPackages // { inherit elpaPackages; } // nongnuPackages // { inherit nongnuPackages; } // melpaStablePackages // { inherit melpaStablePackages; } diff --git a/pkgs/top-level/emscripten-packages.nix b/pkgs/top-level/emscripten-packages.nix index 15baf5ba72910..f4d2fd06a90cd 100644 --- a/pkgs/top-level/emscripten-packages.nix +++ b/pkgs/top-level/emscripten-packages.nix @@ -66,7 +66,10 @@ rec { echo "Compiling a custom test" set -x emcc -O2 -s EMULATE_FUNCTION_POINTER_CASTS=1 xmllint.o \ - ./.libs/libxml2.a `pkg-config zlib --cflags` `pkg-config zlib --libs` -o ./xmllint.test.js \ + ./.libs/'' + + pkgs.lib.optionalString pkgs.stdenv.isDarwin "libxml2.dylib " + + pkgs.lib.optionalString (!pkgs.stdenv.isDarwin) "libxml2.a " + + '' `pkg-config zlib --cflags` `pkg-config zlib --libs` -o ./xmllint.test.js \ --embed-file ./test/xmlid/id_err1.xml echo "Using node to execute the test which basically outputs an error on stderr which we grep for" diff --git a/pkgs/top-level/haskell-packages.nix b/pkgs/top-level/haskell-packages.nix index 3ed35bf460597..6001039689c4c 100644 --- a/pkgs/top-level/haskell-packages.nix +++ b/pkgs/top-level/haskell-packages.nix @@ -20,6 +20,7 @@ let "ghc925" "ghc926" "ghc927" + "ghc928" "ghc92" "ghc942" "ghc943" @@ -28,6 +29,7 @@ let "ghc94" "ghc96" "ghc961" + "ghc962" "ghcHEAD" ]; @@ -39,6 +41,7 @@ let "ghc925" "ghc926" "ghc927" + "ghc928" "ghc94" "ghc942" "ghc943" @@ -46,6 +49,7 @@ let "ghc945" "ghc96" "ghc961" + "ghc962" "ghcHEAD" ]; @@ -231,7 +235,24 @@ in { buildTargetLlvmPackages = pkgsBuildTarget.llvmPackages_12; llvmPackages = pkgs.llvmPackages_12; }; - ghc92 = ghc927; + ghc928 = callPackage ../development/compilers/ghc/9.2.8.nix { + bootPkgs = + # aarch64 ghc8107Binary exceeds max output size on hydra + if stdenv.hostPlatform.isAarch then + packages.ghc8107BinaryMinimal + else if stdenv.hostPlatform.isPower64 && stdenv.hostPlatform.isLittleEndian then + packages.ghc810 + else + packages.ghc8107Binary; + inherit (buildPackages.python3Packages) sphinx; + # Need to use apple's patched xattr until + # https://github.com/xattr/xattr/issues/44 and + # https://github.com/xattr/xattr/issues/55 are solved. + inherit (buildPackages.darwin) xattr autoSignDarwinBinariesHook; + buildTargetLlvmPackages = pkgsBuildTarget.llvmPackages_12; + llvmPackages = pkgs.llvmPackages_12; + }; + ghc92 = ghc928; ghc942 = callPackage ../development/compilers/ghc/9.4.2.nix { bootPkgs = # Building with 9.2 is broken due to @@ -349,7 +370,27 @@ in { buildTargetLlvmPackages = pkgsBuildTarget.llvmPackages_14; llvmPackages = pkgs.llvmPackages_14; }; - ghc96 = ghc961; + ghc962 = callPackage ../development/compilers/ghc/9.6.2.nix { + bootPkgs = + # For GHC 9.2 no armv7l bindists are available. + if stdenv.hostPlatform.isAarch32 then + packages.ghc924 + else if stdenv.hostPlatform.isPower64 && stdenv.hostPlatform.isLittleEndian then + packages.ghc924 + else if stdenv.isAarch64 then + packages.ghc924BinaryMinimal + else + packages.ghc924Binary; + inherit (buildPackages.python3Packages) sphinx; + # Need to use apple's patched xattr until + # https://github.com/xattr/xattr/issues/44 and + # https://github.com/xattr/xattr/issues/55 are solved. + inherit (buildPackages.darwin) xattr autoSignDarwinBinariesHook; + # Support range >= 11 && < 16 + buildTargetLlvmPackages = pkgsBuildTarget.llvmPackages_15; + llvmPackages = pkgs.llvmPackages_15; + }; + ghc96 = ghc962; ghcHEAD = callPackage ../development/compilers/ghc/head.nix { bootPkgs = # For GHC 9.2 no armv7l bindists are available. @@ -485,7 +526,12 @@ in { ghc = bh.compiler.ghc927; compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-9.2.x.nix { }; }; - ghc92 = ghc927; + ghc928 = callPackage ../development/haskell-modules { + buildHaskellPackages = bh.packages.ghc928; + ghc = bh.compiler.ghc928; + compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-9.2.x.nix { }; + }; + ghc92 = ghc928; ghc942 = callPackage ../development/haskell-modules { buildHaskellPackages = bh.packages.ghc942; ghc = bh.compiler.ghc942; @@ -512,7 +558,12 @@ in { ghc = bh.compiler.ghc961; compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-9.6.x.nix { }; }; - ghc96 = ghc961; + ghc962 = callPackage ../development/haskell-modules { + buildHaskellPackages = bh.packages.ghc962; + ghc = bh.compiler.ghc962; + compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-9.6.x.nix { }; + }; + ghc96 = ghc962; ghcHEAD = callPackage ../development/haskell-modules { buildHaskellPackages = bh.packages.ghcHEAD; ghc = bh.compiler.ghcHEAD; diff --git a/pkgs/top-level/linux-kernels.nix b/pkgs/top-level/linux-kernels.nix index a602c2447fb37..4c0d727f5a17d 100644 --- a/pkgs/top-level/linux-kernels.nix +++ b/pkgs/top-level/linux-kernels.nix @@ -154,7 +154,6 @@ in { kernelPatches = [ kernelPatches.bridge_stp_helper kernelPatches.request_key_helper - kernelPatches.fix-em-ice-bonding ]; }; @@ -170,7 +169,6 @@ in { kernelPatches = [ kernelPatches.bridge_stp_helper kernelPatches.request_key_helper - kernelPatches.fix-em-ice-bonding ]; }; @@ -178,7 +176,6 @@ in { kernelPatches = [ kernelPatches.bridge_stp_helper kernelPatches.request_key_helper - kernelPatches.fix-em-ice-bonding kernelPatches.export-rt-sched-migrate ]; }; @@ -187,7 +184,6 @@ in { kernelPatches = [ kernelPatches.bridge_stp_helper kernelPatches.request_key_helper - kernelPatches.fix-em-ice-bonding ]; }; @@ -375,6 +371,8 @@ in { kvdo = callPackage ../os-specific/linux/kvdo {}; + lenovo-legion-module = callPackage ../os-specific/linux/lenovo-legion { }; + liquidtux = callPackage ../os-specific/linux/liquidtux {}; lkrg = callPackage ../os-specific/linux/lkrg {}; diff --git a/pkgs/top-level/make-tarball.nix b/pkgs/top-level/make-tarball.nix index abc121e29dc75..0f1c92be89bc3 100644 --- a/pkgs/top-level/make-tarball.nix +++ b/pkgs/top-level/make-tarball.nix @@ -19,7 +19,7 @@ pkgs.releaseTools.sourceTarball { versionSuffix = "pre${ if nixpkgs ? lastModified then builtins.substring 0 8 (nixpkgs.lastModifiedDate or nixpkgs.lastModified) - else toString nixpkgs.revCount}.${nixpkgs.shortRev or "dirty"}"; + else toString (nixpkgs.revCount or 0)}.${nixpkgs.shortRev or "dirty"}"; buildInputs = with pkgs; [ nix.out jq lib-tests brotli ]; diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix index ef5f5d1e7aaed..d9ff56ca05aaf 100644 --- a/pkgs/top-level/ocaml-packages.nix +++ b/pkgs/top-level/ocaml-packages.nix @@ -936,6 +936,8 @@ let mec = callPackage ../development/ocaml-modules/mec { }; + memtrace = callPackage ../development/ocaml-modules/memtrace { }; + menhir = callPackage ../development/ocaml-modules/menhir { }; menhirLib = callPackage ../development/ocaml-modules/menhir/lib.nix { }; diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix index 515c5b9b6aae7..dac7c49799924 100644 --- a/pkgs/top-level/perl-packages.nix +++ b/pkgs/top-level/perl-packages.nix @@ -10912,6 +10912,7 @@ with self; { url = "mirror://cpan/authors/id/Z/ZE/ZEFRAM/Hash-SharedMem-0.005.tar.gz"; hash = "sha256-Mkd2gIYC973EStqpN4lTZUVAKakm+mEfMhyb9rlAu14="; }; + env.NIX_CFLAGS_COMPILE = lib.optionalString stdenv.isAarch64 "-mno-outline-atomics"; buildInputs = [ ScalarString ]; meta = { description = "Efficient shared mutable hash"; @@ -25171,8 +25172,8 @@ with self; { url = "mirror://cpan/authors/id/A/AM/AMBS/Text-BibTeX-0.88.tar.gz"; hash = "sha256-sBRYbmi9vK+wos+gQB6woE6l3oxNW8Nt0Pf66ras9Cw="; }; - # libbtparse.so: cannot open shared object file (aarch64 only) - patches = [ ../development/perl-modules/TextBibTeX-use-lib-on-aarch64.patch ]; + # libbtparse.so: cannot open shared object file + patches = [ ../development/perl-modules/TextBibTeX-use-lib.patch ]; perlPreHook = "export LD=$CC"; perlPostHook = lib.optionalString stdenv.isDarwin '' oldPath="$(pwd)/btparse/src/libbtparse.dylib" @@ -25928,7 +25929,7 @@ with self; { buildInputs = lib.optionals (!stdenv.isDarwin) [ pkgs.glibcLocales ]; propagatedBuildInputs = [ TextCharWidth ]; preConfigure = '' - substituteInPlace WrapI18N.pm --replace '/usr/bin/locale' '${if stdenv.isDarwin then pkgs.darwin.adv_cmds else pkgs.glibc.bin}/bin/locale' + substituteInPlace WrapI18N.pm --replace '/usr/bin/locale' '${pkgs.unixtools.locale}/bin/locale' ''; meta = { description = "Line wrapping module with support for multibyte, fullwidth, and combining characters and languages without whitespaces between words"; diff --git a/pkgs/top-level/php-packages.nix b/pkgs/top-level/php-packages.nix index af4f288bb7e7b..c351b5a3f3d96 100644 --- a/pkgs/top-level/php-packages.nix +++ b/pkgs/top-level/php-packages.nix @@ -282,6 +282,8 @@ lib.makeScope pkgs.newScope (self: with self; { redis = callPackage ../development/php-packages/redis { }; + relay = callPackage ../development/php-packages/relay { inherit php; }; + smbclient = callPackage ../development/php-packages/smbclient { }; snuffleupagus = callPackage ../development/php-packages/snuffleupagus { }; diff --git a/pkgs/top-level/python-aliases.nix b/pkgs/top-level/python-aliases.nix index c9d0febd30c15..095f2815413bb 100644 --- a/pkgs/top-level/python-aliases.nix +++ b/pkgs/top-level/python-aliases.nix @@ -41,6 +41,7 @@ mapAliases ({ ansible-later = throw "ansible-later has been promoted to a top-level attribute"; # Added 2023-05-16 ansible-lint = throw "ansible-lint has been promoted to a top-level attribute"; # Added 2023-05-16 anyjson = throw "anyjson has been removed, it was using setuptools 2to3 translation feature, which has been removed in setuptools 58"; # added 2022-01-18 + apache-airflow = throw "apache-airflow has been moved out of pythonPackages and is available as a standalone package"; # added 2023-06-05 argon2_cffi = argon2-cffi; # added 2022-05-09 APScheduler = apscheduler; # added 2023-02-19 asyncio-nats-client = nats-py; # added 2022-02-08 @@ -104,6 +105,7 @@ mapAliases ({ face_recognition_models = face-recognition-models; # added 2022-10-15 fake_factory = throw "fake_factory has been removed because it is unused and deprecated by upstream since 2016."; # added 2022-05-30 faulthandler = throw "faulthandler is built into ${python.executable}"; # added 2021-07-12 + inherit (super.pkgs) fetchPypi; # added 2023-05-25 filemagic = throw "inactive since 2014, so use python-magic instead"; # added 2022-11-19 flaskbabel = flask-babel; # added 2023-01-19 flask_login = flask-login; # added 2022-10-17 @@ -214,6 +216,7 @@ mapAliases ({ pymssql = throw "pymssql has been abandoned upstream."; # added 2020-05-04 PyMVGLive = pymvglive; # added 2023-02-19 pyramid_hawkauth = throw "pyramid_hawkauth has been removed because it is no longer maintained"; # added 2023-02-2 + pyramid_jinja2 = pyramid-jinja2; # added 2023-06-06 pyreadability = readability-lxml; # added 2022-05-24 pyroute2-core = throw "pyroute2 migrated back to a single package scheme in version 0.7.1"; # added 2022-07-16 pyroute2-ethtool = throw "pyroute2 migrated back to a single package scheme in version 0.7.1"; # added 2022-07-16 diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 718d366e58a35..3a1693f83d0e9 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -106,6 +106,8 @@ self: super: with self; { aggdraw = callPackage ../development/python-modules/aggdraw { }; + aigpy = callPackage ../development/python-modules/aigpy { }; + aio-geojson-client = callPackage ../development/python-modules/aio-geojson-client { }; aio-geojson-generic-client = callPackage ../development/python-modules/aio-geojson-generic-client { }; @@ -126,6 +128,8 @@ self: super: with self; { aioairzone = callPackage ../development/python-modules/aioairzone { }; + aioairzone-cloud = callPackage ../development/python-modules/aioairzone-cloud { }; + aioairq = callPackage ../development/python-modules/aioairq { }; aioaladdinconnect = callPackage ../development/python-modules/aioaladdinconnect { }; @@ -532,8 +536,6 @@ self: super: with self; { aocd = callPackage ../development/python-modules/aocd { }; - apache-airflow = callPackage ../development/python-modules/apache-airflow { }; - apache-beam = callPackage ../development/python-modules/apache-beam { }; apcaccess = callPackage ../development/python-modules/apcaccess { }; @@ -608,6 +610,8 @@ self: super: with self; { argparse-addons = callPackage ../development/python-modules/argparse-addons { }; + argparse-dataclass = callPackage ../development/python-modules/argparse-dataclass { }; + args = callPackage ../development/python-modules/args { }; aria2p = callPackage ../development/python-modules/aria2p { }; @@ -626,6 +630,8 @@ self: super: with self; { arsenic = callPackage ../development/python-modules/arsenic { }; + art = callPackage ../development/python-modules/art { }; + arviz = callPackage ../development/python-modules/arviz { }; arxiv2bib = callPackage ../development/python-modules/arxiv2bib { }; @@ -1487,6 +1493,8 @@ self: super: with self; { brian2 = callPackage ../development/python-modules/brian2 { }; + broadbean = callPackage ../development/python-modules/broadbean { }; + broadlink = callPackage ../development/python-modules/broadlink { }; brother = callPackage ../development/python-modules/brother { }; @@ -1717,6 +1725,8 @@ self: super: with self; { certipy = callPackage ../development/python-modules/certipy { }; + certipy-ad = callPackage ../development/python-modules/certipy-ad { }; + certomancer = callPackage ../development/python-modules/certomancer { }; certvalidator = callPackage ../development/python-modules/certvalidator { }; @@ -1857,6 +1867,8 @@ self: super: with self; { cock = callPackage ../development/python-modules/cock { }; + class-doc = callPackage ../development/python-modules/class-doc { }; + click = callPackage ../development/python-modules/click { }; clickclick = callPackage ../development/python-modules/clickclick { }; @@ -2553,6 +2565,8 @@ self: super: with self; { dissect-clfs = callPackage ../development/python-modules/dissect-clfs { }; + dissect-cobaltstrike = callPackage ../development/python-modules/dissect-cobaltstrike { }; + dissect-cstruct = callPackage ../development/python-modules/dissect-cstruct { }; dissect-fat = callPackage ../development/python-modules/dissect-fat { }; @@ -3516,7 +3530,7 @@ self: super: with self; { fenics = callPackage ../development/python-modules/fenics { hdf5 = pkgs.hdf5_1_10; - boost = pkgs.boost169; + boost = pkgs.boost172; }; ffcv = callPackage ../development/python-modules/ffcv { }; @@ -4090,7 +4104,9 @@ self: super: with self; { glean-parser = callPackage ../development/python-modules/glean-parser { }; - glean-sdk = callPackage ../development/python-modules/glean-sdk { }; + glean-sdk = callPackage ../development/python-modules/glean-sdk { + inherit (pkgs) lmdb; + }; glfw = callPackage ../development/python-modules/glfw { }; @@ -4364,6 +4380,8 @@ self: super: with self; { grpc-google-iam-v1 = callPackage ../development/python-modules/grpc-google-iam-v1 { }; + grpc-interceptor = callPackage ../development/python-modules/grpc-interceptor { }; + grpcio = callPackage ../development/python-modules/grpcio { }; grpcio-gcp = callPackage ../development/python-modules/grpcio-gcp { }; @@ -4627,6 +4645,11 @@ self: super: with self; { hpccm = callPackage ../development/python-modules/hpccm { }; + hpp-fcl = toPythonModule (pkgs.hpp-fcl.override { + pythonSupport = true; + python3Packages = self; + }); + hs-dbus-signature = callPackage ../development/python-modules/hs-dbus-signature { }; hsaudiotag3k = callPackage ../development/python-modules/hsaudiotag3k { }; @@ -5470,6 +5493,8 @@ self: super: with self; { knack = callPackage ../development/python-modules/knack { }; + kneed = callPackage ../development/python-modules/kneed { }; + kombu = callPackage ../development/python-modules/kombu { }; konnected = callPackage ../development/python-modules/konnected { }; @@ -6209,6 +6234,8 @@ self: super: with self; { migen = callPackage ../development/python-modules/migen { }; + mike = callPackage ../development/python-modules/mike { }; + milc = callPackage ../development/python-modules/milc { }; milksnake = callPackage ../development/python-modules/milksnake { }; @@ -6937,6 +6964,8 @@ self: super: with self; { obspy = callPackage ../development/python-modules/obspy { }; + oca-port = callPackage ../development/python-modules/oca-port { }; + oci = callPackage ../development/python-modules/oci { }; ocifs = callPackage ../development/python-modules/ocifs { }; @@ -7038,6 +7067,8 @@ self: super: with self; { opencensus-context = callPackage ../development/python-modules/opencensus-context { }; + opencensus-ext-azure = callPackage ../development/python-modules/opencensus-ext-azure { }; + opencontainers = callPackage ../development/python-modules/opencontainers { }; opencv3 = toPythonModule (pkgs.opencv3.override { @@ -7087,6 +7118,36 @@ self: super: with self; { opentimestamps = callPackage ../development/python-modules/opentimestamps { }; + opentelemetry-api = callPackage ../development/python-modules/opentelemetry-api { }; + + opentelemetry-exporter-otlp = callPackage ../development/python-modules/opentelemetry-exporter-otlp { }; + + opentelemetry-exporter-otlp-proto-common = callPackage ../development/python-modules/opentelemetry-exporter-otlp-proto-common { }; + + opentelemetry-exporter-otlp-proto-grpc = callPackage ../development/python-modules/opentelemetry-exporter-otlp-proto-grpc { }; + + opentelemetry-exporter-otlp-proto-http = callPackage ../development/python-modules/opentelemetry-exporter-otlp-proto-http { }; + + opentelemetry-exporter-prometheus = callPackage ../development/python-modules/opentelemetry-exporter-prometheus { }; + + opentelemetry-instrumentation = callPackage ../development/python-modules/opentelemetry-instrumentation { }; + + opentelemetry-instrumentation-asgi = callPackage ../development/python-modules/opentelemetry-instrumentation-asgi { }; + + opentelemetry-instrumentation-django = callPackage ../development/python-modules/opentelemetry-instrumentation-django { }; + + opentelemetry-instrumentation-wsgi = callPackage ../development/python-modules/opentelemetry-instrumentation-wsgi { }; + + opentelemetry-proto = callPackage ../development/python-modules/opentelemetry-proto { }; + + opentelemetry-semantic-conventions = callPackage ../development/python-modules/opentelemetry-semantic-conventions { }; + + opentelemetry-sdk = callPackage ../development/python-modules/opentelemetry-sdk { }; + + opentelemetry-test-utils = callPackage ../development/python-modules/opentelemetry-test-utils { }; + + opentelemetry-util-http = callPackage ../development/python-modules/opentelemetry-util-http { }; + openturns = toPythonModule (pkgs.openturns.override { python3Packages = self; enablePython = true; @@ -7214,6 +7275,8 @@ self: super: with self; { pallets-sphinx-themes = callPackage ../development/python-modules/pallets-sphinx-themes { }; + python_docs_theme = callPackage ../development/python-modules/python_docs_theme { }; + pamela = callPackage ../development/python-modules/pamela { }; pamqp = callPackage ../development/python-modules/pamqp { }; @@ -7695,6 +7758,8 @@ self: super: with self; { pyschemes = callPackage ../development/python-modules/pyschemes { }; + pyschlage = callPackage ../development/python-modules/pyschlage { }; + pyshark = callPackage ../development/python-modules/pyshark { }; pysiaalarm = callPackage ../development/python-modules/pysiaalarm { }; @@ -7777,6 +7842,8 @@ self: super: with self; { pyzbar = callPackage ../development/python-modules/pyzbar { }; + pyzipper = callPackage ../development/python-modules/pyzipper { }; + pkutils = callPackage ../development/python-modules/pkutils { }; plac = callPackage ../development/python-modules/plac { }; @@ -9135,7 +9202,7 @@ self: super: with self; { pyramid_exclog = callPackage ../development/python-modules/pyramid_exclog { }; - pyramid_jinja2 = callPackage ../development/python-modules/pyramid_jinja2 { }; + pyramid-jinja2 = callPackage ../development/python-modules/pyramid-jinja2 { }; pyramid_mako = callPackage ../development/python-modules/pyramid_mako { }; @@ -9530,6 +9597,8 @@ self: super: with self; { pytest-golden = callPackage ../development/python-modules/pytest-golden { }; + pytest-grpc = callPackage ../development/python-modules/pytest-grpc { }; + pytest-helpers-namespace = callPackage ../development/python-modules/pytest-helpers-namespace { }; pytest-html = callPackage ../development/python-modules/pytest-html { }; @@ -10110,6 +10179,8 @@ self: super: with self; { pyvisa-py = callPackage ../development/python-modules/pyvisa-py { }; + pyvisa-sim = callPackage ../development/python-modules/pyvisa-sim { }; + pyvista = callPackage ../development/python-modules/pyvista { }; pyviz-comms = callPackage ../development/python-modules/pyviz-comms { }; @@ -10202,6 +10273,12 @@ self: super: with self; { qcengine = callPackage ../development/python-modules/qcengine { }; + qcodes = callPackage ../development/python-modules/qcodes { }; + + qcodes-contrib-drivers = callPackage ../development/python-modules/qcodes-contrib-drivers { }; + + qcodes-loop = callPackage ../development/python-modules/qcodes-loop { }; + qcs-api-client = callPackage ../development/python-modules/qcs-api-client { }; qdarkstyle = callPackage ../development/python-modules/qdarkstyle { }; @@ -10560,10 +10637,14 @@ self: super: with self; { rich = callPackage ../development/python-modules/rich { }; + rich-argparse = callPackage ../development/python-modules/rich-argparse { }; + rich-argparse-plus = callPackage ../development/python-modules/rich-argparse-plus { }; rich-click = callPackage ../development/python-modules/rich-click { }; + rich-pixels = callPackage ../development/python-modules/rich-pixels { }; + rich-rst = callPackage ../development/python-modules/rich-rst { }; ring-doorbell = callPackage ../development/python-modules/ring-doorbell { }; @@ -10902,6 +10983,8 @@ self: super: with self; { sdds = callPackage ../development/python-modules/sdds { }; + sdkmanager = callPackage ../development/python-modules/sdkmanager { }; + sdnotify = callPackage ../development/python-modules/sdnotify { }; seaborn = callPackage ../development/python-modules/seaborn { }; @@ -11681,6 +11764,8 @@ self: super: with self; { stringly = callPackage ../development/python-modules/stringly { }; + stringparser = callPackage ../development/python-modules/stringparser { }; + stripe = callPackage ../development/python-modules/stripe { }; striprtf = callPackage ../development/python-modules/striprtf { }; @@ -12429,6 +12514,8 @@ self: super: with self; { types-decorator = callPackage ../development/python-modules/types-decorator { }; + types-deprecated = callPackage ../development/python-modules/types-deprecated { }; + types-docutils = callPackage ../development/python-modules/types-docutils { }; types-enum34 = callPackage ../development/python-modules/types-enum34 { }; @@ -12591,6 +12678,8 @@ self: super: with self; { univers = callPackage ../development/python-modules/univers { }; + universal-pathlib = callPackage ../development/python-modules/universal-pathlib { }; + unpaddedbase64 = callPackage ../development/python-modules/unpaddedbase64 { }; unrardll = callPackage ../development/python-modules/unrardll { }; @@ -12737,6 +12826,8 @@ self: super: with self; { versiontools = callPackage ../development/python-modules/versiontools { }; + verspec = callPackage ../development/python-modules/verspec { }; + vertica-python = callPackage ../development/python-modules/vertica-python { }; veryprettytable = callPackage ../development/python-modules/veryprettytable { }; @@ -13049,6 +13140,8 @@ self: super: with self; { }; }; + wyoming = callPackage ../development/python-modules/wyoming { }; + x-wr-timezone = callPackage ../development/python-modules/x-wr-timezone { }; x11_hash = callPackage ../development/python-modules/x11_hash { }; @@ -13101,6 +13194,8 @@ self: super: with self; { xknx = callPackage ../development/python-modules/xknx { }; + xknxproject = callPackage ../development/python-modules/xknxproject { }; + xlib = callPackage ../development/python-modules/xlib { }; xlrd = callPackage ../development/python-modules/xlrd { }; diff --git a/pkgs/top-level/qt6-packages.nix b/pkgs/top-level/qt6-packages.nix index 4381f4ab89b4d..b3fd53eae2080 100644 --- a/pkgs/top-level/qt6-packages.nix +++ b/pkgs/top-level/qt6-packages.nix @@ -31,12 +31,16 @@ in inherit (kdeFrameworks) kcoreaddons; + qt6ct = callPackage ../tools/misc/qt6ct { }; + qtkeychain = callPackage ../development/libraries/qtkeychain { inherit (pkgs.darwin.apple_sdk.frameworks) CoreFoundation Security; }; qtpbfimageplugin = callPackage ../development/libraries/qtpbfimageplugin { }; + qtstyleplugin-kvantum = callPackage ../development/libraries/qtstyleplugin-kvantum { }; + quazip = callPackage ../development/libraries/quazip { }; qxlsx = callPackage ../development/libraries/qxlsx { }; diff --git a/pkgs/top-level/release-haskell.nix b/pkgs/top-level/release-haskell.nix index cc8c1b24640bd..09087a3c73e16 100644 --- a/pkgs/top-level/release-haskell.nix +++ b/pkgs/top-level/release-haskell.nix @@ -67,8 +67,10 @@ let ghc925 ghc926 ghc927 + ghc928 ghc945 ghc961 + ghc962 ]; # packagePlatforms applied to `haskell.packages.*` @@ -330,7 +332,6 @@ let nvfetcher ormolu pandoc - pakcs petrinizer place-cursor-at pinboard-notes-backup @@ -437,8 +438,8 @@ let ; }; - haskell.packages.native-bignum.ghc927 = { - inherit (packagePlatforms pkgs.pkgsStatic.haskell.packages.native-bignum.ghc927) + haskell.packages.native-bignum.ghc928 = { + inherit (packagePlatforms pkgs.pkgsStatic.haskell.packages.native-bignum.ghc928) hello lens random @@ -487,12 +488,15 @@ let Cabal-syntax_3_10_1_0 = released; cabal2nix = lib.subtractLists [ compilerNames.ghc961 + compilerNames.ghc962 ] released; cabal2nix-unstable = lib.subtractLists [ compilerNames.ghc961 + compilerNames.ghc962 ] released; funcmp = lib.subtractLists [ compilerNames.ghc961 + compilerNames.ghc962 ] released; haskell-language-server = lib.subtractLists [ # Support ceased as of 1.9.0.0 @@ -500,17 +504,21 @@ let ] released; hoogle = lib.subtractLists [ compilerNames.ghc961 + compilerNames.ghc962 ] released; hlint = lib.subtractLists [ compilerNames.ghc961 + compilerNames.ghc962 ] released; hpack = lib.subtractLists [ compilerNames.ghc961 + compilerNames.ghc962 ] released; hsdns = released; jailbreak-cabal = released; language-nix = lib.subtractLists [ compilerNames.ghc961 + compilerNames.ghc962 ] released; nix-paths = released; titlecase = released; @@ -533,6 +541,7 @@ let compilerNames.ghc925 compilerNames.ghc926 compilerNames.ghc927 + compilerNames.ghc928 compilerNames.ghc945 ]; weeder = [ @@ -542,6 +551,7 @@ let compilerNames.ghc925 compilerNames.ghc926 compilerNames.ghc927 + compilerNames.ghc928 compilerNames.ghc945 ]; }) @@ -623,6 +633,7 @@ let jobs.pkgsMusl.haskell.compiler.ghc925 jobs.pkgsMusl.haskell.compiler.ghc926 jobs.pkgsMusl.haskell.compiler.ghc927 + jobs.pkgsMusl.haskell.compiler.ghc928 jobs.pkgsMusl.haskell.compiler.ghcHEAD jobs.pkgsMusl.haskell.compiler.integer-simple.ghc8107 jobs.pkgsMusl.haskell.compiler.native-bignum.ghc902 @@ -630,6 +641,7 @@ let jobs.pkgsMusl.haskell.compiler.native-bignum.ghc925 jobs.pkgsMusl.haskell.compiler.native-bignum.ghc926 jobs.pkgsMusl.haskell.compiler.native-bignum.ghc927 + jobs.pkgsMusl.haskell.compiler.native-bignum.ghc928 jobs.pkgsMusl.haskell.compiler.native-bignum.ghcHEAD ]; }; @@ -645,7 +657,7 @@ let }; constituents = accumulateDerivations [ jobs.pkgsStatic.haskellPackages - jobs.pkgsStatic.haskell.packages.native-bignum.ghc927 + jobs.pkgsStatic.haskell.packages.native-bignum.ghc928 ]; }; } diff --git a/pkgs/top-level/release-small.nix b/pkgs/top-level/release-small.nix index 333e285cef0a0..f2cc7ae471a42 100644 --- a/pkgs/top-level/release-small.nix +++ b/pkgs/top-level/release-small.nix @@ -89,7 +89,7 @@ with import ./release-lib.nix { inherit supportedSystems nixpkgsArgs; }; man-pages = linux; mc = all; mdadm = linux; - mesa = mesaPlatforms; + mesa = linux; mingetty = linux; mktemp = all; monotone = linux; diff --git a/pkgs/top-level/ruby-packages.nix b/pkgs/top-level/ruby-packages.nix index f5aaec79deda1..a47b78c461b78 100644 --- a/pkgs/top-level/ruby-packages.nix +++ b/pkgs/top-level/ruby-packages.nix @@ -233,6 +233,17 @@ }; version = "3.2.4"; }; + bulma-clean-theme = { + dependencies = ["jekyll" "jekyll-seo-tag"]; + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1qvnl0xgzxbgyniv5m52mm5mr4rmgn3mqx0qa9xhl3lj75mfdfgh"; + type = "gem"; + }; + version = "0.13.1"; + }; byebug = { groups = ["default"]; platforms = []; diff --git a/pkgs/top-level/unixtools.nix b/pkgs/top-level/unixtools.nix index 0097852c535c8..aa282adf6a3af 100644 --- a/pkgs/top-level/unixtools.nix +++ b/pkgs/top-level/unixtools.nix @@ -61,7 +61,7 @@ let }; column = { linux = pkgs.util-linux; - darwin = pkgs.netbsd.column; + darwin = pkgs.darwin.text_cmds; }; eject = { linux = pkgs.util-linux; @@ -106,7 +106,7 @@ let }; locale = { linux = pkgs.glibc; - darwin = pkgs.netbsd.locale; + darwin = pkgs.darwin.adv_cmds; }; logger = { linux = pkgs.util-linux; |